Query 038362
Match_columns 110
No_of_seqs 121 out of 719
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 100.0 7.8E-28 1.7E-32 171.4 10.4 93 1-98 1-95 (125)
2 PLN00193 expansin-A; Provision 99.9 6.3E-26 1.4E-30 177.8 11.4 106 1-107 1-121 (256)
3 PLN00050 expansin A; Provision 99.9 2.4E-25 5.2E-30 173.8 9.8 84 19-105 23-111 (247)
4 PLN03023 Expansin-like B1; Pro 99.9 3.6E-24 7.9E-29 167.2 9.5 77 17-98 21-102 (247)
5 smart00837 DPBB_1 Rare lipopro 99.7 4.7E-18 1E-22 114.3 5.2 52 52-105 1-53 (87)
6 PF03330 DPBB_1: Rare lipoprot 99.2 2.2E-11 4.8E-16 79.0 5.1 47 52-99 1-51 (78)
7 PF00967 Barwin: Barwin family 97.4 0.00016 3.4E-09 51.4 3.1 37 56-99 50-86 (119)
8 TIGR00413 rlpA rare lipoprotei 96.0 0.022 4.8E-07 44.0 6.0 59 24-99 1-61 (208)
9 PF07249 Cerato-platanin: Cera 95.1 0.044 9.6E-07 39.0 4.5 44 45-98 38-82 (119)
10 PRK10672 rare lipoprotein A; P 92.5 0.42 9.1E-06 39.8 6.3 60 23-99 80-141 (361)
11 COG4305 Endoglucanase C-termin 89.8 1.4 2.9E-05 34.0 6.2 65 23-99 32-100 (232)
12 COG0797 RlpA Lipoproteins [Cel 89.5 1.1 2.4E-05 35.2 5.7 65 18-99 79-145 (233)
13 PF02015 Glyco_hydro_45: Glyco 72.0 4.5 9.7E-05 31.3 3.1 42 51-96 69-110 (201)
14 PF04202 Mfp-3: Foot protein 3 53.4 13 0.00029 24.1 2.2 30 5-34 4-33 (71)
15 PF07172 GRP: Glycine rich pro 49.8 12 0.00026 25.4 1.7 10 5-14 6-15 (95)
16 PF15240 Pro-rich: Proline-ric 49.1 9.3 0.0002 29.0 1.2 26 7-32 2-29 (179)
17 PLN03156 GDSL esterase/lipase; 39.8 38 0.00083 27.5 3.5 32 1-32 3-36 (351)
18 COG2165 PulG Type II secretory 30.6 43 0.00093 22.1 2.1 16 3-18 13-28 (149)
19 PRK15239 putative fimbrial pro 30.6 55 0.0012 24.5 2.8 19 20-39 21-39 (197)
20 COG4968 PilE Tfp pilus assembl 26.8 55 0.0012 23.9 2.2 17 3-19 11-27 (139)
21 PF08194 DIM: DIM protein; In 24.8 1.3E+02 0.0028 17.1 3.0 24 4-28 5-28 (36)
22 PRK10574 putative major pilin 23.9 64 0.0014 23.3 2.1 16 3-18 10-25 (146)
23 PRK09733 putative fimbrial pro 23.0 86 0.0019 22.7 2.6 38 1-39 1-40 (181)
24 PRK15289 lpfA fimbrial protein 22.3 1.1E+02 0.0025 22.2 3.2 38 1-39 1-40 (190)
25 TIGR01710 typeII_sec_gspG gene 21.9 76 0.0016 22.1 2.1 15 3-17 6-20 (134)
26 PRK09936 hypothetical protein; 21.9 68 0.0015 26.2 2.0 26 4-31 3-28 (296)
27 PRK15205 long polar fimbrial p 21.4 81 0.0018 22.8 2.2 38 1-39 3-44 (176)
28 PRK15209 long polar fimbrial p 21.1 1.2E+02 0.0026 21.7 3.0 38 1-39 1-40 (174)
29 PTZ00257 Glycoprotein GP63 (le 20.6 1E+02 0.0023 27.6 3.0 28 66-100 506-538 (622)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=7.8e-28 Score=171.43 Aligned_cols=93 Identities=28% Similarity=0.650 Sum_probs=81.6
Q ss_pred CchHHHHHHHHHHHHhhhcCcccccEEEeCCCCCCCCCCCCCCCCCCCCCeEEEechhhhCCcccccceEEEEecccC--
Q 038362 1 MHQSLVFLCLLAAIFFHHSRGDVGTAARYGPPFLPTACNGNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAA-- 78 (110)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~a~~~~g~AT~Yg~~~~~GACyg~~~~~~~~g~~vaAlS~~lf~nG~~CG~cy~V~C~~~~-- 78 (110)
|....+|++.++++|++++.+.+|+||||++ +.+||||++. ++|.++||+|++||+||+.||+||||||.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~G~AT~Y~~-~~~gAC~~~~----~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~ 75 (125)
T PLN03024 1 MSKRILIFSTVLVFLFSVSYATPGIATFYTS-YTPSACYRGT----SFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNA 75 (125)
T ss_pred CceeeHHHHHHHHHHhhhhcccceEEEEeCC-CCCccccCCC----CCCCEeEEeCHHHcCCCcccCceEEEEECCCCcc
Confidence 5567889999999999999999999999985 4578997764 47899999999999999999999999996632
Q ss_pred cCCcccCCcEEEEEecCCCC
Q 038362 79 VSGTCINNTIQIKIVDRAQS 98 (110)
Q Consensus 79 ~~~~C~~~sV~V~VtD~CP~ 98 (110)
.+++|++++|+|+|||+||+
T Consensus 76 ~~~~c~gksV~V~VtD~CP~ 95 (125)
T PLN03024 76 VPHPCTGKSVTVKIVDHCPS 95 (125)
T ss_pred ccccccCCeEEEEEEcCCCC
Confidence 24689999999999999984
No 2
>PLN00193 expansin-A; Provisional
Probab=99.93 E-value=6.3e-26 Score=177.80 Aligned_cols=106 Identities=28% Similarity=0.382 Sum_probs=82.2
Q ss_pred CchHHHHHHHHHHHHh---------hhcCcccccEEEeCCCCC----CCCC-CCCCCCCCCCCCeEEEechhhhCCcccc
Q 038362 1 MHQSLVFLCLLAAIFF---------HHSRGDVGTAARYGPPFL----PTAC-NGNDQSQFPSGNLFAAAGEGIWDNGASC 66 (110)
Q Consensus 1 ~~~~~~~~~~~~~~l~---------~~a~~~~g~AT~Yg~~~~----~GAC-yg~~~~~~~~g~~vaAlS~~lf~nG~~C 66 (110)
|..+|+-+.++|.++- +.+.|.+++||||+.++. +||| |++. ...++|.++||+|++||++|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l-~~~~~g~~~AAls~~lf~~G~~C 79 (256)
T PLN00193 1 MSKSLLGLAILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNL-YSTGYGTRTAALSTALFNDGASC 79 (256)
T ss_pred CchhhHHHHHHHHHHHHHHhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCc-cccCCCceeeecCHhHccCCccc
Confidence 5566666666655432 224689999999997653 5899 5544 45678999999999999999999
Q ss_pred cceEEEEecccCcCCcccC-CcEEEEEecCCCCCCCCCCCCC
Q 038362 67 GRQYKLRCISAAVSGTCIN-NTIQIKIVDRAQSLVSTPSLKG 107 (110)
Q Consensus 67 G~cy~V~C~~~~~~~~C~~-~sV~V~VtD~CP~~~~~~~~~~ 107 (110)
|+||||||.....+++|.+ ++|+|+|||+||++++.|++.+
T Consensus 80 GaCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~g 121 (256)
T PLN00193 80 GQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNG 121 (256)
T ss_pred cCeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCC
Confidence 9999999953223678965 4999999999999998886643
No 3
>PLN00050 expansin A; Provisional
Probab=99.92 E-value=2.4e-25 Score=173.80 Aligned_cols=84 Identities=25% Similarity=0.373 Sum_probs=72.3
Q ss_pred cCcccccEEEeCCCCC----CCCC-CCCCCCCCCCCCeEEEechhhhCCcccccceEEEEecccCcCCcccCCcEEEEEe
Q 038362 19 SRGDVGTAARYGPPFL----PTAC-NGNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIV 93 (110)
Q Consensus 19 a~~~~g~AT~Yg~~~~----~GAC-yg~~~~~~~~g~~vaAlS~~lf~nG~~CG~cy~V~C~~~~~~~~C~~~sV~V~Vt 93 (110)
..|.+++|||||.++. +||| |++. ...++|.++||+|++||++|++||+||||||.+. +.+|.+++|+|+||
T Consensus 23 ~~W~~a~AT~Yg~~dg~gt~gGACGYg~l-~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~--~~~C~~gsV~V~it 99 (247)
T PLN00050 23 SGWTGAHATFYGGGDASGTMGGACGYGNL-YSQGYGTNTAALSTALFNNGLSCGACFEIKCVND--NIWCLPGSIIITAT 99 (247)
T ss_pred CCccccEEEEcCCCCCCCCCCcccCCCCc-cccCCCceeeeccHhHccCCccccceEEEEcCCC--CcccCCCcEEEEEe
Confidence 4799999999997653 5899 5553 4457899999999999999999999999999763 56899899999999
Q ss_pred cCCCCCCCCCCC
Q 038362 94 DRAQSLVSTPSL 105 (110)
Q Consensus 94 D~CP~~~~~~~~ 105 (110)
|+||+++..|++
T Consensus 100 d~CP~~~~~~~~ 111 (247)
T PLN00050 100 NFCPPNLALPNN 111 (247)
T ss_pred cCCCCCcCcCcc
Confidence 999999888755
No 4
>PLN03023 Expansin-like B1; Provisional
Probab=99.91 E-value=3.6e-24 Score=167.17 Aligned_cols=77 Identities=23% Similarity=0.510 Sum_probs=66.3
Q ss_pred hhcCcccccEEEeCCCC----CCCCC-CCCCCCCCCCCCeEEEechhhhCCcccccceEEEEecccCcCCcccCCcEEEE
Q 038362 17 HHSRGDVGTAARYGPPF----LPTAC-NGNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIK 91 (110)
Q Consensus 17 ~~a~~~~g~AT~Yg~~~----~~GAC-yg~~~~~~~~g~~vaAlS~~lf~nG~~CG~cy~V~C~~~~~~~~C~~~sV~V~ 91 (110)
....|.+++|||||+++ .+||| |++ .....+|.++||+| +||+||++||+||||||.+ +++|++++|+|+
T Consensus 21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~-~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~---~~~C~~~~v~V~ 95 (247)
T PLN03023 21 KSQDFTYSRATYYGSPDCLGTPTGACGFGE-YGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA---PNLCSDDGVNVV 95 (247)
T ss_pred hcCCcccceEEEeCCCCCCCCCCccccCCc-cccCCCcceeeeeh-hhhcCCchhcccEEeecCC---CCccCCCCeEEE
Confidence 33678999999999887 36899 555 55556789999999 9999999999999999976 679999999999
Q ss_pred EecCCCC
Q 038362 92 IVDRAQS 98 (110)
Q Consensus 92 VtD~CP~ 98 (110)
|||+||.
T Consensus 96 iTd~~~~ 102 (247)
T PLN03023 96 VTDYGEG 102 (247)
T ss_pred EEeCCCC
Confidence 9999974
No 5
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.73 E-value=4.7e-18 Score=114.29 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=45.8
Q ss_pred EEEechhhhCCcccccceEEEEecccCcCCcccC-CcEEEEEecCCCCCCCCCCC
Q 038362 52 FAAAGEGIWDNGASCGRQYKLRCISAAVSGTCIN-NTIQIKIVDRAQSLVSTPSL 105 (110)
Q Consensus 52 vaAlS~~lf~nG~~CG~cy~V~C~~~~~~~~C~~-~sV~V~VtD~CP~~~~~~~~ 105 (110)
+||+|++||++|++||+||||||.+. +++|++ ++|+|+|||+||+++..|++
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~--~~~C~~~~~V~V~vtd~CP~~~~~~~~ 53 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDS--PKWCKPGGSITVTATNFCPPNYALSND 53 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCC--CCcccCCCeEEEEEeccCCcccccccc
Confidence 48999999999999999999999653 678986 59999999999999877754
No 6
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.21 E-value=2.2e-11 Score=79.00 Aligned_cols=47 Identities=36% Similarity=0.754 Sum_probs=35.4
Q ss_pred EEEechhhhCCcccccceEEEEecccCcCCc--ccC--CcEEEEEecCCCCC
Q 038362 52 FAAAGEGIWDNGASCGRQYKLRCISAAVSGT--CIN--NTIQIKIVDRAQSL 99 (110)
Q Consensus 52 vaAlS~~lf~nG~~CG~cy~V~C~~~~~~~~--C~~--~sV~V~VtD~CP~~ 99 (110)
+||++..+|++|.+||+||+++|.... +.. |+. ++|+|+|+|+||.+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a-~~~~~~~~~~ksV~v~V~D~Cp~~ 51 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAA-SATGTCKVGNKSVTVTVVDRCPGC 51 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---S-STT--BESEECEEEEEEEEE-TTS
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccC-CccceEEecCCeEEEEEEccCCCC
Confidence 589999999999999999999994322 222 776 99999999999875
No 7
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=97.39 E-value=0.00016 Score=51.39 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=22.7
Q ss_pred chhhhCCcccccceEEEEecccCcCCcccCCcEEEEEecCCCCC
Q 038362 56 GEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDRAQSL 99 (110)
Q Consensus 56 S~~lf~nG~~CG~cy~V~C~~~~~~~~C~~~sV~V~VtD~CP~~ 99 (110)
.+.=-.....||+|++|+-.. ++.+++|+|||+|+.+
T Consensus 50 gp~g~~gq~~CGkClrVTNt~-------tga~~~~RIVDqCsnG 86 (119)
T PF00967_consen 50 GPAGPMGQDSCGKCLRVTNTA-------TGAQVTVRIVDQCSNG 86 (119)
T ss_dssp STT---SGGGTT-EEEEE-TT-------T--EEEEEEEEE-SSS
T ss_pred cccCccCcccccceEEEEecC-------CCcEEEEEEEEcCCCC
Confidence 333334568999999999533 4689999999999655
No 8
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=96.00 E-value=0.022 Score=44.03 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=39.8
Q ss_pred ccEEEeCCCCCC--CCCCCCCCCCCCCCCeEEEechhhhCCcccccceEEEEecccCcCCcccCCcEEEEEecCCCCC
Q 038362 24 GTAARYGPPFLP--TACNGNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDRAQSL 99 (110)
Q Consensus 24 g~AT~Yg~~~~~--GACyg~~~~~~~~g~~vaAlS~~lf~nG~~CG~cy~V~C~~~~~~~~C~~~sV~V~VtD~CP~~ 99 (110)
|.|+|||+...+ .|.+... ....|.||=.+ | -.|...+|+-.. ++++|+|+|.|++|--
T Consensus 1 G~ASwYg~~f~G~~TAnGe~y----~~~~~tAAHkt-L-----PlgT~V~VtNl~-------ngrsviVrVnDRGPf~ 61 (208)
T TIGR00413 1 GLASWYGPKFHGRKTANGEVY----NMKALTAAHKT-L-----PFNTYVKVTNLH-------NNRSVIVRINDRGPFS 61 (208)
T ss_pred CEEeEeCCCCCCCcCCCCeec----CCCcccccccc-C-----CCCCEEEEEECC-------CCCEEEEEEeCCCCCC
Confidence 679999975432 3442221 23456655443 2 678999998644 5799999999999853
No 9
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=95.12 E-value=0.044 Score=38.98 Aligned_cols=44 Identities=25% Similarity=0.436 Sum_probs=29.9
Q ss_pred CCCCCCeEEEechh-hhCCcccccceEEEEecccCcCCcccCCcEEEEEecCCCC
Q 038362 45 QFPSGNLFAAAGEG-IWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDRAQS 98 (110)
Q Consensus 45 ~~~~g~~vaAlS~~-lf~nG~~CG~cy~V~C~~~~~~~~C~~~sV~V~VtD~CP~ 98 (110)
++|.=-+|.+.... -| |...||.|||++. ++++|.|..+|.-++
T Consensus 38 ~lp~Fp~IGg~~~V~gW-nS~~CGtC~~lty---------~g~si~vlaID~a~~ 82 (119)
T PF07249_consen 38 SLPNFPYIGGAPAVAGW-NSPNCGTCWKLTY---------NGRSIYVLAIDHAGG 82 (119)
T ss_dssp CSTTTTSEEEETT--ST-T-TTTT-EEEEEE---------TTEEEEEEEEEE-SS
T ss_pred hcCCCCeeccccccccC-CCCCCCCeEEEEE---------CCeEEEEEEEecCCC
Confidence 34433567777654 46 5689999999996 468999999998644
No 10
>PRK10672 rare lipoprotein A; Provisional
Probab=92.53 E-value=0.42 Score=39.78 Aligned_cols=60 Identities=25% Similarity=0.241 Sum_probs=38.4
Q ss_pred cccEEEeCCCCCC--CCCCCCCCCCCCCCCeEEEechhhhCCcccccceEEEEecccCcCCcccCCcEEEEEecCCCCC
Q 038362 23 VGTAARYGPPFLP--TACNGNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDRAQSL 99 (110)
Q Consensus 23 ~g~AT~Yg~~~~~--GACyg~~~~~~~~g~~vaAlS~~lf~nG~~CG~cy~V~C~~~~~~~~C~~~sV~V~VtD~CP~~ 99 (110)
.|.|+|||....+ .|- |.. +....|.||-.+ .--|...+|+-.. ++++|+|+|.|++|-.
T Consensus 80 ~G~ASwYg~~f~G~~TA~-Ge~---~~~~~~tAAH~t------LPlps~vrVtNl~-------ngrsvvVrVnDRGP~~ 141 (361)
T PRK10672 80 AGLAAIYDAEAGSNLTAS-GER---FDPNALTAAHPT------LPIPSYVRVTNLA-------NGRMIVVRINDRGPYG 141 (361)
T ss_pred EEEEEEeCCccCCCcCcC-cee---ecCCcCeeeccC------CCCCCEEEEEECC-------CCcEEEEEEeCCCCCC
Confidence 4888999865432 233 111 123456555443 2467888998644 5799999999999844
No 11
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=89.76 E-value=1.4 Score=34.00 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=49.8
Q ss_pred cccEEEeCCCCCCCCCCCCCCCCCCCCCeEEEechhhhCCc----ccccceEEEEecccCcCCcccCCcEEEEEecCCCC
Q 038362 23 VGTAARYGPPFLPTACNGNDQSQFPSGNLFAAAGEGIWDNG----ASCGRQYKLRCISAAVSGTCINNTIQIKIVDRAQS 98 (110)
Q Consensus 23 ~g~AT~Yg~~~~~GACyg~~~~~~~~g~~vaAlS~~lf~nG----~~CG~cy~V~C~~~~~~~~C~~~sV~V~VtD~CP~ 98 (110)
.|-|||-+..|.+||= ..++++.+..|.|++++.-|=| +.=|+-.||.- | ++..+|-|||+=|+
T Consensus 32 ~G~ATyTgsGYsGGAf---lLDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG-----P----KG~TTVYVTDlYPe 99 (232)
T COG4305 32 EGYATYTGSGYSGGAF---LLDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG-----P----KGKTTVYVTDLYPE 99 (232)
T ss_pred ceeEEEecccccCceE---EecCcCCcceeeecCHHHcccCCchhhhccceEEEEC-----C----CCceEEEEeccccc
Confidence 4788887776666554 2355677889999999988865 46899999984 3 35779999999987
Q ss_pred C
Q 038362 99 L 99 (110)
Q Consensus 99 ~ 99 (110)
.
T Consensus 100 g 100 (232)
T COG4305 100 G 100 (232)
T ss_pred c
Confidence 6
No 12
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=89.48 E-value=1.1 Score=35.24 Aligned_cols=65 Identities=25% Similarity=0.274 Sum_probs=38.9
Q ss_pred hcCcccccEEEeCCCCCC--CCCCCCCCCCCCCCCeEEEechhhhCCcccccceEEEEecccCcCCcccCCcEEEEEecC
Q 038362 18 HSRGDVGTAARYGPPFLP--TACNGNDQSQFPSGNLFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDR 95 (110)
Q Consensus 18 ~a~~~~g~AT~Yg~~~~~--GACyg~~~~~~~~g~~vaAlS~~lf~nG~~CG~cy~V~C~~~~~~~~C~~~sV~V~VtD~ 95 (110)
......|.|+|||+...+ .|= |.- +....++||=-+-= =|.-.+|+-.+ ++++|.|+|.|+
T Consensus 79 ~~~~~~G~ASwYg~~fhgr~TA~-Ge~---~n~~~~tAAH~TLP------~~t~v~VtNl~-------NgrsvvVRINDR 141 (233)
T COG0797 79 ASFEQVGYASWYGEKFHGRKTAN-GER---YDMNALTAAHKTLP------LPTYVRVTNLD-------NGRSVVVRINDR 141 (233)
T ss_pred ccccccceeeeeccccCCccccC-ccc---ccccccccccccCC------CCCEEEEEEcc-------CCcEEEEEEeCC
Confidence 345567999999954322 121 111 12245555544322 35667787544 579999999999
Q ss_pred CCCC
Q 038362 96 AQSL 99 (110)
Q Consensus 96 CP~~ 99 (110)
+|=-
T Consensus 142 GPf~ 145 (233)
T COG0797 142 GPFV 145 (233)
T ss_pred CCCC
Confidence 9843
No 13
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=71.98 E-value=4.5 Score=31.26 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=24.6
Q ss_pred eEEEechhhhCCcccccceEEEEecccCcCCcccCCcEEEEEecCC
Q 038362 51 LFAAAGEGIWDNGASCGRQYKLRCISAAVSGTCINNTIQIKIVDRA 96 (110)
Q Consensus 51 ~vaAlS~~lf~nG~~CG~cy~V~C~~~~~~~~C~~~sV~V~VtD~C 96 (110)
-+||.+-.=-.+...|++||+++-.+. .-++|...|++|+.-
T Consensus 69 GfaA~~~~G~~e~~~Cc~Cy~LtFt~g----~l~GKkmiVQ~tNtG 110 (201)
T PF02015_consen 69 GFAAASITGGSESSWCCACYELTFTSG----PLKGKKMIVQVTNTG 110 (201)
T ss_dssp EEEEEE-TT--HHHHTT-EEEEEE-SS----TTTT-EEEEEEEEE-
T ss_pred eeeeeeecCCCCCCcccceEEEEEcCC----CcCCCEeEEEecccC
Confidence 356666321223368999999998652 235789999998754
No 14
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=53.43 E-value=13 Score=24.12 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhcCcccccEEEeCCCCC
Q 038362 5 LVFLCLLAAIFFHHSRGDVGTAARYGPPFL 34 (110)
Q Consensus 5 ~~~~~~~~~~l~~~a~~~~g~AT~Yg~~~~ 34 (110)
|.|++++.+.|+.+-+-++.-.-+|+|.++
T Consensus 4 ~Si~VLlaLvLIg~fAVqSdag~~y~p~y~ 33 (71)
T PF04202_consen 4 LSIAVLLALVLIGSFAVQSDAGYYYYPGYN 33 (71)
T ss_pred hhHHHHHHHHHHhhheeeecCccccCCCCC
Confidence 444444444444333333333445676654
No 15
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.84 E-value=12 Score=25.42 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 038362 5 LVFLCLLAAI 14 (110)
Q Consensus 5 ~~~~~~~~~~ 14 (110)
||++.++|++
T Consensus 6 ~llL~l~LA~ 15 (95)
T PF07172_consen 6 FLLLGLLLAA 15 (95)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 16
>PF15240 Pro-rich: Proline-rich
Probab=49.14 E-value=9.3 Score=29.02 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhcCcc--cccEEEeCCC
Q 038362 7 FLCLLAAIFFHHSRGD--VGTAARYGPP 32 (110)
Q Consensus 7 ~~~~~~~~l~~~a~~~--~g~AT~Yg~~ 32 (110)
+||+|.++|..+++|+ .-...++..+
T Consensus 2 LlVLLSvALLALSSAQ~~dEdv~~e~~~ 29 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDEDVSQEESP 29 (179)
T ss_pred hhHHHHHHHHHhhhccccccccccccCc
Confidence 4444445555554444 3444555543
No 17
>PLN03156 GDSL esterase/lipase; Provisional
Probab=39.82 E-value=38 Score=27.50 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHHHhhhcCcccc-cEEE-eCCC
Q 038362 1 MHQSLVFLCLLAAIFFHHSRGDVG-TAAR-YGPP 32 (110)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~a~~~~g-~AT~-Yg~~ 32 (110)
||+.+.++++++++|..++..... .|-| +|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~aifvFGDS 36 (351)
T PLN03156 3 MHLFLIFFLLLAQLLVLVAETCAKVPAIIVFGDS 36 (351)
T ss_pred cchhhHHHHHHHHHHHHHhcccCCCCEEEEecCc
Confidence 899999999999999877655432 3433 5654
No 18
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.60 E-value=43 Score=22.14 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHhhh
Q 038362 3 QSLVFLCLLAAIFFHH 18 (110)
Q Consensus 3 ~~~~~~~~~~~~l~~~ 18 (110)
++++|+++|+++|..+
T Consensus 13 iElLVvl~Iigil~~~ 28 (149)
T COG2165 13 IELLVVLAIIGILAAL 28 (149)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666655533
No 19
>PRK15239 putative fimbrial protein StaA; Provisional
Probab=30.55 E-value=55 Score=24.45 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=12.8
Q ss_pred CcccccEEEeCCCCCCCCCC
Q 038362 20 RGDVGTAARYGPPFLPTACN 39 (110)
Q Consensus 20 ~~~~g~AT~Yg~~~~~GACy 39 (110)
++..|+.+|.|. .....|-
T Consensus 21 a~~~GtI~F~G~-I~d~tC~ 39 (197)
T PRK15239 21 AVEGGRINFEGL-VSAETCK 39 (197)
T ss_pred hccCCEEEEEEE-Eeeceee
Confidence 345799999994 2245774
No 20
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.76 E-value=55 Score=23.94 Aligned_cols=17 Identities=12% Similarity=0.190 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHhhhc
Q 038362 3 QSLVFLCLLAAIFFHHS 19 (110)
Q Consensus 3 ~~~~~~~~~~~~l~~~a 19 (110)
++|+|+++|+++|..++
T Consensus 11 IELmIvVaIv~ILa~IA 27 (139)
T COG4968 11 IELMIVVAIVGILALIA 27 (139)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888888888887553
No 21
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=24.83 E-value=1.3e+02 Score=17.13 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhcCcccccEEE
Q 038362 4 SLVFLCLLAAIFFHHSRGDVGTAAR 28 (110)
Q Consensus 4 ~~~~~~~~~~~l~~~a~~~~g~AT~ 28 (110)
++++++.+++ |.+...+.+|+.+-
T Consensus 5 ~~a~~l~lLa-l~~a~~~~pG~ViI 28 (36)
T PF08194_consen 5 SLAFALLLLA-LAAAVPATPGNVII 28 (36)
T ss_pred HHHHHHHHHH-HHhcccCCCCeEEE
Confidence 3433444444 55555566666553
No 22
>PRK10574 putative major pilin subunit; Provisional
Probab=23.91 E-value=64 Score=23.31 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHhhh
Q 038362 3 QSLVFLCLLAAIFFHH 18 (110)
Q Consensus 3 ~~~~~~~~~~~~l~~~ 18 (110)
++++|++.|+++|..+
T Consensus 10 IELmIViaIigILaai 25 (146)
T PRK10574 10 IELMVVIAIIAILSAI 25 (146)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888888777644
No 23
>PRK09733 putative fimbrial protein; Provisional
Probab=23.00 E-value=86 Score=22.70 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=21.2
Q ss_pred CchHHHHHHHHHHHHhhhcCc--ccccEEEeCCCCCCCCCC
Q 038362 1 MHQSLVFLCLLAAIFFHHSRG--DVGTAARYGPPFLPTACN 39 (110)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~a~~--~~g~AT~Yg~~~~~GACy 39 (110)
|+.++++..+++.++...+.+ ..|+.+|.|. .....|-
T Consensus 1 ~~k~~~~~~~~~~~~~~~~~a~~~~G~i~f~G~-I~~~tC~ 40 (181)
T PRK09733 1 AFKKSLLVAGVAMILSNNVFADEGHGIVKFKGE-VISAPCS 40 (181)
T ss_pred CchhHHHHHHHHHHHhHHhhhhcCCCEEEEEEE-EEeccee
Confidence 344555555544444444333 3688999984 2345783
No 24
>PRK15289 lpfA fimbrial protein; Provisional
Probab=22.33 E-value=1.1e+02 Score=22.21 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHHHh--hhcCcccccEEEeCCCCCCCCCC
Q 038362 1 MHQSLVFLCLLAAIFF--HHSRGDVGTAARYGPPFLPTACN 39 (110)
Q Consensus 1 ~~~~~~~~~~~~~~l~--~~a~~~~g~AT~Yg~~~~~GACy 39 (110)
|+..++..+++++++. ..+.+..|+.+|.|. .....|-
T Consensus 1 mk~~~~~~~~~~~~~~~~~~a~a~~G~I~f~G~-I~~~tC~ 40 (190)
T PRK15289 1 MKRNIIGGAFTLASLMLAGHALAEDGVVHFVGE-IVDTTCE 40 (190)
T ss_pred CcHHHHHHHHHHHHHHhhccccccCCEEEEEEE-EecceeE
Confidence 5555443333333322 224455799999984 2346783
No 25
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=21.91 E-value=76 Score=22.11 Aligned_cols=15 Identities=0% Similarity=0.202 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHhh
Q 038362 3 QSLVFLCLLAAIFFH 17 (110)
Q Consensus 3 ~~~~~~~~~~~~l~~ 17 (110)
.+++|+++|+++|+.
T Consensus 6 iEllivlaIigil~~ 20 (134)
T TIGR01710 6 LEIMVVLVILGLLAA 20 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356666666665543
No 26
>PRK09936 hypothetical protein; Provisional
Probab=21.91 E-value=68 Score=26.23 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhhcCcccccEEEeCC
Q 038362 4 SLVFLCLLAAIFFHHSRGDVGTAARYGP 31 (110)
Q Consensus 4 ~~~~~~~~~~~l~~~a~~~~g~AT~Yg~ 31 (110)
.|+++++.+.++.+.+.+.+|. ||-|
T Consensus 3 ~~~~~~l~~l~~~~~~~a~~g~--F~Qp 28 (296)
T PRK09936 3 KFIFVLLTLLLVSPFSQAMKGI--FYQP 28 (296)
T ss_pred hHHHHHHHHHHcCchhhccccc--eecc
Confidence 5667777777777778888776 8975
No 27
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=21.39 E-value=81 Score=22.79 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=19.4
Q ss_pred CchHHHHHHHHHHHHhhhcC----cccccEEEeCCCCCCCCCC
Q 038362 1 MHQSLVFLCLLAAIFFHHSR----GDVGTAARYGPPFLPTACN 39 (110)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~a~----~~~g~AT~Yg~~~~~GACy 39 (110)
|++.++.+..+++.+.++++ ...|+.+|.|.- ....|-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~f~G~I-~~~tC~ 44 (176)
T PRK15205 3 NKRALLPLALLLLTASGMAAPTDLGPAGDIHFTITI-KAKACE 44 (176)
T ss_pred hHHHHHHHHHHhcchhhhcCCCcccCCeEEEEEEEE-Eeccce
Confidence 45544444444332333322 235899999842 245783
No 28
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=21.08 E-value=1.2e+02 Score=21.72 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=19.3
Q ss_pred CchHHHHHHHHHHHHhhhc--CcccccEEEeCCCCCCCCCC
Q 038362 1 MHQSLVFLCLLAAIFFHHS--RGDVGTAARYGPPFLPTACN 39 (110)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~a--~~~~g~AT~Yg~~~~~GACy 39 (110)
|...++.++++.++..+.. ....|+.+|.|.- ....|-
T Consensus 1 Mkk~~~~~~~~~~~~~~a~aa~~~~g~I~f~G~I-~~~tC~ 40 (174)
T PRK15209 1 MKKVVFALSALALTSTSVFAAESGDGTVKFTGEI-VDAPCV 40 (174)
T ss_pred CchHHHHHHHHHHHhhhccccccCCcEEEEEEEE-EcCcce
Confidence 5554444433333222222 2346889999842 246883
No 29
>PTZ00257 Glycoprotein GP63 (leishmanolysin); Provisional
Probab=20.61 E-value=1e+02 Score=27.64 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=18.3
Q ss_pred ccceEEEEecccCcCCcccCCcEEEEEec-----CCCCCC
Q 038362 66 CGRQYKLRCISAAVSGTCINNTIQIKIVD-----RAQSLV 100 (110)
Q Consensus 66 CG~cy~V~C~~~~~~~~C~~~sV~V~VtD-----~CP~~~ 100 (110)
=+.|++|+|.+. .+++.|++.+ .||++-
T Consensus 506 ~~~C~~v~C~~~-------~~t~sV~v~G~~~w~~Cp~G~ 538 (622)
T PTZ00257 506 NALCANVMCDTA-------ARTYSVQVRGSSGYVACTPGE 538 (622)
T ss_pred CCEEEEEECCCC-------CCEEEEEEEeCCCEEECCCCC
Confidence 379999999441 2566666653 487763
Done!