BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038364
(1076 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I1H|A Chain A, Crystal Structure Of Human Bfl-1 In Complex With Bak Bh3
Peptide
Length = 161
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 556 GYILRNGLDYDLYV--------GTSLMDMYVKNDCLQNAQEVFDNMK----NRNIVAWNS 603
GYI R DY V G S ++N +EV N+K N N+V+ ++
Sbjct: 17 GYIYRLAQDYLQXVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDT 76
Query: 604 LISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSG 663
A+ + NQ+ E+E + +++W +V+ ++ G ++I +
Sbjct: 77 -------------ARTLFNQVMEKEFEDGIINWGRIVTIFAFEG------ILIKKLLRQQ 117
Query: 664 IYPNVVTWTSL 674
I P+V T+ +
Sbjct: 118 IAPDVDTYKEI 128
>pdb|3FBX|A Chain A, Crystal Structure Of The Lysosomal 66.3 Kda Protein From
Mouse Solved By S-Sad
Length = 559
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 796 LETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847
LE GF PDA+ + L A + E GW Y D +ST+ +++ Y+ V
Sbjct: 34 LEDGFHPDAVAWANLTNAIR-----ETGWAYLD-LSTNGRYNDSLQAYAAGV 79
>pdb|3FGR|A Chain A, Two Chain Form Of The 66.3 Kda Protein At 1.8 Angstroem
pdb|3FGT|A Chain A, Two Chain Form Of The 66.3 Kda Protein From Mouse Lacking
The Linker Peptide
Length = 202
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 796 LETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847
LE GF PDA+ + L A + E GW Y D +ST+ +++ Y+ V
Sbjct: 34 LEDGFHPDAVAWANLTNAIR-----ETGWAYLD-LSTNGRYNDSLQAYAAGV 79
>pdb|3FGW|A Chain A, One Chain Form Of The 66.3 Kda Protein
Length = 559
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 796 LETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847
LE GF PDA+ + L A + E GW Y D +ST+ +++ Y+ V
Sbjct: 34 LEDGFHPDAVAWANLTNAIR-----ETGWAYLD-LSTNGRYNDSLQAYAAGV 79
>pdb|3MQP|A Chain A, Crystal Structure Of Human Bfl-1 In Complex With Noxa Bh3
Peptide, Northeast Structural Genomics Consortium Target
Hr2930
Length = 161
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 556 GYILRNGLDYDLYV--------GTSLMDMYVKNDCLQNAQEVFDNMK----NRNIVAWNS 603
GYI R DY V G S ++N +EV N+K N N+V+ ++
Sbjct: 17 GYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDT 76
Query: 604 LISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSG 663
A+ + NQ+ E+E + +++W +V+ ++ G ++I +
Sbjct: 77 -------------ARTLFNQVMEKEFEDGIINWGRIVTIFAFEG------ILIKKLLRQQ 117
Query: 664 IYPNVVTWTSL 674
I P+V T+ +
Sbjct: 118 IAPDVDTYKEI 128
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 561 NGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNR 596
NG+D D + TSL D+Y DC +A + D R
Sbjct: 265 NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIR 300
>pdb|2VM6|A Chain A, Human Bcl2-A1 In Complex With Bim-Bh3 Peptide
Length = 150
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 31/131 (23%)
Query: 556 GYILRNGLDYDLYV--------GTSLMDMYVKNDCLQNAQEVFDNMK----NRNIVAWNS 603
GYI R DY V G S ++N +EV N+K N N+V+ ++
Sbjct: 8 GYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVNVVSVDT 67
Query: 604 LISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSG 663
A+ + NQ+ E+E + +++W +V+ ++ G ++I +
Sbjct: 68 -------------ARTLFNQVMEKEFEDGIINWGRIVTIFAFEG------ILIKKLLRQQ 108
Query: 664 IYPNVVTWTSL 674
I P+V T+ +
Sbjct: 109 IAPDVDTYKEI 119
>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
Length = 761
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
Length = 761
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
Length = 761
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|3UUS|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|A Chain A, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|B Chain B, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|C Chain C, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|D Chain D, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 761
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
Length = 761
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 385 REMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRN 444
R+M FS A VK L+ G + ++ G + +SA + V CL S Y R
Sbjct: 139 RDMTFSYAA------VKQLE-----GKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRE 187
Query: 445 NKLELATRVFDSMKDHNLSSWNSMIS 470
+L+ R +D++ +S ++S
Sbjct: 188 TRLQYVKRFYDAVSTFKISLPTPIMS 213
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALL 811
TL +N +++G+A G KE + + + + G PD +++ A L
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 141 KLHSIYHHFNTRTSINQNRHSHKPNS 166
KLH I+ H N +T + + +H+ +P++
Sbjct: 156 KLHFIFRHKNPKTGVYEEKHAKRPDA 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,414,257
Number of Sequences: 62578
Number of extensions: 1269212
Number of successful extensions: 2906
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2896
Number of HSP's gapped (non-prelim): 43
length of query: 1076
length of database: 14,973,337
effective HSP length: 109
effective length of query: 967
effective length of database: 8,152,335
effective search space: 7883307945
effective search space used: 7883307945
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)