Query 038364
Match_columns 1076
No_of_seqs 1027 out of 5666
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-145 4E-150 1390.3 87.4 807 254-1073 47-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-121 5E-126 1142.5 72.4 612 359-1075 85-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.3E-86 5E-91 846.6 69.6 621 196-866 91-717 (857)
4 PLN03081 pentatricopeptide (PP 100.0 6.8E-71 1.5E-75 688.2 50.8 510 254-805 83-611 (697)
5 PLN03218 maturation of RBCL 1; 100.0 6.9E-68 1.5E-72 663.9 59.8 528 326-873 367-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 3.6E-65 7.9E-70 639.4 57.5 522 225-767 368-909 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.6E-35 7.9E-40 379.6 83.4 715 203-936 137-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.3E-35 1.1E-39 378.0 84.2 716 199-933 167-898 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.9E-34 6.3E-39 267.8 8.4 106 942-1065 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.3E-21 2.9E-26 256.7 67.9 636 266-934 36-739 (1157)
11 PRK11447 cellulose synthase su 99.9 9.4E-21 2E-25 248.7 68.4 252 639-900 467-739 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1E-18 2.2E-23 219.5 63.6 642 239-933 56-738 (987)
13 PRK09782 bacteriophage N4 rece 99.9 2.6E-18 5.6E-23 216.0 63.5 590 308-936 58-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.8 2.2E-17 4.7E-22 183.8 34.8 448 436-932 53-516 (966)
15 PRK11788 tetratricopeptide rep 99.8 2.5E-17 5.4E-22 192.5 28.9 300 470-805 43-354 (389)
16 KOG4626 O-linked N-acetylgluco 99.8 2.6E-16 5.6E-21 175.3 31.2 381 542-936 92-486 (966)
17 PRK11788 tetratricopeptide rep 99.8 2.1E-16 4.5E-21 184.7 31.7 293 371-704 45-354 (389)
18 KOG2002 TPR-containing nuclear 99.8 7.2E-14 1.6E-18 164.6 50.4 548 377-936 146-746 (1018)
19 TIGR00990 3a0801s09 mitochondr 99.8 8E-15 1.7E-19 181.2 44.1 425 464-935 129-571 (615)
20 KOG2002 TPR-containing nuclear 99.7 1.9E-12 4.1E-17 152.8 58.3 551 373-937 176-800 (1018)
21 PRK10049 pgaA outer membrane p 99.7 9.4E-14 2E-18 175.0 45.1 388 539-936 22-457 (765)
22 TIGR00990 3a0801s09 mitochondr 99.7 4E-13 8.6E-18 166.2 47.9 444 433-934 129-596 (615)
23 PRK10049 pgaA outer membrane p 99.7 1.5E-13 3.2E-18 173.3 41.2 396 469-908 22-463 (765)
24 KOG4422 Uncharacterized conser 99.7 1.3E-12 2.9E-17 140.7 41.3 475 258-826 116-618 (625)
25 PRK15174 Vi polysaccharide exp 99.7 2.7E-13 5.9E-18 167.4 41.9 351 442-832 16-380 (656)
26 PRK14574 hmsH outer membrane p 99.7 8.2E-13 1.8E-17 163.5 44.0 433 471-936 43-514 (822)
27 KOG4318 Bicoid mRNA stability 99.7 1.4E-12 3.1E-17 151.7 41.8 638 280-938 11-811 (1088)
28 PRK15174 Vi polysaccharide exp 99.7 3E-13 6.4E-18 167.0 38.7 325 573-906 48-386 (656)
29 KOG0495 HAT repeat protein [RN 99.6 1.3E-09 2.7E-14 123.7 57.5 610 307-949 264-892 (913)
30 PRK14574 hmsH outer membrane p 99.6 2.2E-11 4.7E-16 151.0 46.9 445 338-833 43-513 (822)
31 KOG4422 Uncharacterized conser 99.6 2.6E-11 5.7E-16 130.8 36.1 358 255-661 204-589 (625)
32 KOG2076 RNA polymerase III tra 99.5 1.5E-09 3.3E-14 128.1 52.7 589 339-935 150-849 (895)
33 KOG2076 RNA polymerase III tra 99.5 5.5E-09 1.2E-13 123.5 52.9 626 272-931 153-891 (895)
34 KOG0495 HAT repeat protein [RN 99.5 6.4E-08 1.4E-12 110.2 55.8 611 240-914 264-893 (913)
35 KOG4318 Bicoid mRNA stability 99.5 2.2E-10 4.7E-15 133.9 37.1 512 382-945 11-603 (1088)
36 KOG2003 TPR repeat-containing 99.5 2.9E-10 6.4E-15 123.0 34.7 480 432-921 202-709 (840)
37 KOG2003 TPR repeat-containing 99.3 3.9E-10 8.5E-15 122.1 26.1 465 368-855 208-709 (840)
38 PF13429 TPR_15: Tetratricopep 99.3 2.8E-12 6.1E-17 142.6 9.1 253 675-932 15-274 (280)
39 KOG0985 Vesicle coat protein c 99.3 9.6E-07 2.1E-11 104.6 53.6 237 667-932 983-1246(1666)
40 KOG0547 Translocase of outer m 99.3 6.3E-09 1.4E-13 114.9 31.0 212 715-932 338-563 (606)
41 KOG1126 DNA-binding cell divis 99.3 2.8E-10 6E-15 130.6 20.5 223 705-935 355-586 (638)
42 PRK10747 putative protoheme IX 99.2 2.8E-09 6E-14 124.3 27.9 286 580-902 97-391 (398)
43 KOG1173 Anaphase-promoting com 99.2 2.9E-08 6.3E-13 111.9 33.8 482 431-933 16-516 (611)
44 TIGR00540 hemY_coli hemY prote 99.2 8.5E-09 1.8E-13 120.9 30.8 254 641-898 126-396 (409)
45 KOG4162 Predicted calmodulin-b 99.2 1.8E-06 4E-11 101.0 47.8 455 474-946 239-793 (799)
46 PF13429 TPR_15: Tetratricopep 99.2 8.8E-11 1.9E-15 130.6 11.3 255 638-900 13-276 (280)
47 KOG1915 Cell cycle control pro 99.2 2.4E-06 5.2E-11 94.4 44.8 421 342-810 86-546 (677)
48 PRK10747 putative protoheme IX 99.2 2E-08 4.4E-13 117.1 31.3 246 679-934 129-389 (398)
49 KOG1155 Anaphase-promoting com 99.1 5.6E-08 1.2E-12 107.0 30.1 357 563-932 160-533 (559)
50 KOG1126 DNA-binding cell divis 99.1 4.1E-09 8.8E-14 121.2 22.0 196 736-936 419-621 (638)
51 TIGR02521 type_IV_pilW type IV 99.1 9.5E-09 2.1E-13 109.8 23.8 197 737-934 30-231 (234)
52 TIGR00540 hemY_coli hemY prote 99.1 2.4E-08 5.1E-13 117.2 28.4 258 440-731 127-398 (409)
53 KOG3616 Selective LIM binding 99.1 9.1E-06 2E-10 93.4 47.2 461 239-826 456-930 (1636)
54 KOG2047 mRNA splicing factor [ 99.1 1.1E-05 2.5E-10 92.3 47.9 458 329-831 102-613 (835)
55 KOG0985 Vesicle coat protein c 99.1 5.8E-05 1.3E-09 90.1 54.3 126 332-457 609-750 (1666)
56 PF13041 PPR_2: PPR repeat fam 99.1 1.9E-10 4E-15 91.2 6.3 50 460-509 1-50 (50)
57 PF13041 PPR_2: PPR repeat fam 99.1 2.3E-10 5E-15 90.7 6.5 50 359-408 1-50 (50)
58 KOG1915 Cell cycle control pro 99.1 7.9E-06 1.7E-10 90.4 43.1 498 395-932 72-622 (677)
59 KOG1155 Anaphase-promoting com 99.0 1.3E-06 2.9E-11 96.4 35.9 323 596-934 162-494 (559)
60 KOG3616 Selective LIM binding 99.0 4.9E-05 1.1E-09 87.6 47.0 193 368-592 739-933 (1636)
61 KOG1173 Anaphase-promoting com 99.0 4.3E-06 9.3E-11 94.8 36.6 494 400-916 20-533 (611)
62 COG2956 Predicted N-acetylgluc 98.9 6.5E-07 1.4E-11 94.8 27.5 302 612-955 49-367 (389)
63 KOG3617 WD40 and TPR repeat-co 98.9 1.8E-05 4E-10 92.3 40.8 149 327-488 724-884 (1416)
64 KOG2047 mRNA splicing factor [ 98.9 0.00034 7.4E-09 80.6 52.8 457 255-736 57-582 (835)
65 KOG1840 Kinesin light chain [C 98.9 1E-07 2.2E-12 111.2 22.6 229 705-933 201-477 (508)
66 COG3071 HemY Uncharacterized e 98.9 1.5E-06 3.2E-11 95.1 29.8 280 510-796 97-388 (400)
67 COG2956 Predicted N-acetylgluc 98.9 6.5E-07 1.4E-11 94.8 26.0 284 373-697 47-347 (389)
68 KOG0547 Translocase of outer m 98.9 1.6E-06 3.5E-11 96.3 29.3 212 612-831 340-564 (606)
69 COG3071 HemY Uncharacterized e 98.9 2.2E-06 4.9E-11 93.6 29.8 60 873-933 329-388 (400)
70 KOG3785 Uncharacterized conser 98.8 1.7E-05 3.7E-10 84.7 33.3 130 772-904 362-493 (557)
71 PRK12370 invasion protein regu 98.8 3.6E-07 7.8E-12 111.4 24.3 211 717-936 318-536 (553)
72 PRK11189 lipoprotein NlpI; Pro 98.8 4.4E-07 9.6E-12 101.4 22.3 210 718-936 41-266 (296)
73 KOG1156 N-terminal acetyltrans 98.8 3.2E-05 6.9E-10 89.2 36.1 414 474-932 53-508 (700)
74 KOG3617 WD40 and TPR repeat-co 98.8 0.00058 1.3E-08 80.3 46.3 407 221-694 720-1171(1416)
75 KOG2376 Signal recognition par 98.8 0.00012 2.6E-09 83.8 39.3 184 741-932 312-517 (652)
76 TIGR02521 type_IV_pilW type IV 98.8 1.2E-06 2.6E-11 93.4 23.1 162 739-902 66-233 (234)
77 KOG4162 Predicted calmodulin-b 98.7 0.00012 2.7E-09 86.1 39.9 131 771-906 652-788 (799)
78 KOG2376 Signal recognition par 98.7 7.5E-05 1.6E-09 85.4 36.9 120 368-494 19-142 (652)
79 KOG1840 Kinesin light chain [C 98.7 1.6E-06 3.4E-11 101.3 24.4 235 635-900 201-478 (508)
80 KOG1127 TPR repeat-containing 98.7 0.00042 9E-09 83.6 43.9 177 209-388 474-657 (1238)
81 KOG1127 TPR repeat-containing 98.7 0.00035 7.5E-09 84.2 41.6 545 377-934 474-1103(1238)
82 KOG1174 Anaphase-promoting com 98.7 0.00017 3.7E-09 79.0 35.3 266 632-905 231-504 (564)
83 KOG1174 Anaphase-promoting com 98.7 9.5E-05 2.1E-09 80.9 33.4 353 571-934 101-499 (564)
84 PRK11189 lipoprotein NlpI; Pro 98.7 4E-06 8.6E-11 93.8 24.1 208 706-921 67-286 (296)
85 PF12569 NARP1: NMDA receptor- 98.7 5.5E-05 1.2E-09 89.7 34.6 291 439-765 12-332 (517)
86 PRK12370 invasion protein regu 98.7 5E-06 1.1E-10 101.4 26.6 177 445-626 318-501 (553)
87 KOG3785 Uncharacterized conser 98.6 0.00014 3.1E-09 77.9 32.7 94 744-843 399-497 (557)
88 KOG1129 TPR repeat-containing 98.6 1E-06 2.2E-11 93.1 16.0 154 778-935 299-458 (478)
89 COG3063 PilF Tfp pilus assembl 98.6 2.3E-06 4.9E-11 87.2 18.0 161 772-937 38-204 (250)
90 KOG1156 N-terminal acetyltrans 98.6 0.00086 1.9E-08 77.8 40.3 246 410-661 21-282 (700)
91 KOG1129 TPR repeat-containing 98.5 5.4E-06 1.2E-10 87.7 19.2 228 566-797 222-457 (478)
92 PRK04841 transcriptional regul 98.5 0.0015 3.2E-08 85.4 46.3 360 577-936 351-761 (903)
93 KOG1914 mRNA cleavage and poly 98.5 0.00067 1.4E-08 77.0 35.3 171 684-856 347-526 (656)
94 KOG0548 Molecular co-chaperone 98.4 8.8E-05 1.9E-09 84.2 26.8 217 706-936 227-456 (539)
95 PF04733 Coatomer_E: Coatomer 98.4 9.7E-06 2.1E-10 89.6 18.6 251 643-905 11-269 (290)
96 PF12569 NARP1: NMDA receptor- 98.4 0.00011 2.5E-09 87.0 28.1 298 606-932 12-331 (517)
97 KOG4340 Uncharacterized conser 98.4 0.00021 4.6E-09 75.0 26.2 411 500-934 13-442 (459)
98 KOG0624 dsRNA-activated protei 98.4 0.00029 6.2E-09 75.4 26.4 207 573-805 44-257 (504)
99 PF12854 PPR_1: PPR repeat 98.3 6.8E-07 1.5E-11 64.0 3.7 32 663-694 2-33 (34)
100 PRK04841 transcriptional regul 98.3 0.023 5.1E-07 74.3 48.8 368 438-832 348-759 (903)
101 cd05804 StaR_like StaR_like; a 98.3 0.00058 1.3E-08 78.6 30.2 194 743-936 119-337 (355)
102 PF04733 Coatomer_E: Coatomer 98.3 1.6E-05 3.6E-10 87.8 15.3 245 677-935 10-265 (290)
103 PF12854 PPR_1: PPR repeat 98.2 1.4E-06 3E-11 62.4 3.9 33 324-356 2-34 (34)
104 TIGR03302 OM_YfiO outer membra 98.2 7.4E-05 1.6E-09 80.7 18.7 180 736-935 31-232 (235)
105 cd05804 StaR_like StaR_like; a 98.2 0.0034 7.4E-08 72.3 33.1 116 580-696 93-214 (355)
106 KOG1125 TPR repeat-containing 98.2 2.9E-05 6.3E-10 88.7 14.6 220 678-933 295-525 (579)
107 COG3063 PilF Tfp pilus assembl 98.2 0.00034 7.5E-09 71.6 20.8 195 707-906 39-241 (250)
108 KOG4340 Uncharacterized conser 98.1 0.00041 8.8E-09 72.9 21.0 306 601-932 13-336 (459)
109 PRK15359 type III secretion sy 98.1 5.9E-05 1.3E-09 74.6 13.8 121 790-917 14-137 (144)
110 PRK10370 formate-dependent nit 98.1 0.0001 2.2E-09 77.0 16.2 147 776-936 23-174 (198)
111 KOG1070 rRNA processing protei 98.1 0.00028 6.1E-09 87.6 21.4 197 737-938 1457-1666(1710)
112 KOG0548 Molecular co-chaperone 98.0 0.01 2.2E-07 68.0 30.4 232 674-919 230-473 (539)
113 PF07079 DUF1347: Protein of u 98.0 0.045 9.7E-07 61.5 34.4 436 443-932 18-521 (549)
114 PRK15359 type III secretion sy 97.9 8.7E-05 1.9E-09 73.3 11.4 95 842-936 26-122 (144)
115 PRK15363 pathogenicity island 97.9 0.00018 3.8E-09 70.4 12.9 118 840-980 35-154 (157)
116 PLN02789 farnesyltranstransfer 97.9 0.0021 4.5E-08 72.2 22.9 187 742-932 75-299 (320)
117 KOG1070 rRNA processing protei 97.9 0.0014 3.1E-08 81.7 22.8 192 668-866 1458-1660(1710)
118 TIGR00756 PPR pentatricopeptid 97.9 2.2E-05 4.8E-10 56.4 4.5 35 362-396 1-35 (35)
119 KOG1128 Uncharacterized conser 97.8 0.00065 1.4E-08 79.8 18.1 221 562-833 393-616 (777)
120 COG5010 TadD Flp pilus assembl 97.8 0.00062 1.3E-08 71.3 16.1 135 800-936 62-198 (257)
121 TIGR03302 OM_YfiO outer membra 97.8 0.00063 1.4E-08 73.4 17.3 179 702-903 32-234 (235)
122 KOG1128 Uncharacterized conser 97.8 0.00039 8.4E-09 81.7 16.0 188 734-936 394-583 (777)
123 PRK15179 Vi polysaccharide bio 97.8 0.0011 2.3E-08 81.8 20.0 188 705-910 30-226 (694)
124 TIGR00756 PPR pentatricopeptid 97.8 4.1E-05 8.8E-10 55.0 4.4 35 599-633 1-35 (35)
125 COG4783 Putative Zn-dependent 97.7 0.0026 5.6E-08 72.1 20.0 144 771-936 308-455 (484)
126 COG4783 Putative Zn-dependent 97.7 0.0057 1.2E-07 69.4 22.7 176 752-933 251-435 (484)
127 KOG1125 TPR repeat-containing 97.7 0.0026 5.6E-08 73.3 19.6 215 441-660 295-525 (579)
128 PRK10370 formate-dependent nit 97.7 0.0026 5.7E-08 66.4 18.4 154 744-909 22-181 (198)
129 PRK15179 Vi polysaccharide bio 97.7 0.0038 8.2E-08 77.1 22.6 193 668-879 28-229 (694)
130 KOG0624 dsRNA-activated protei 97.7 0.053 1.1E-06 58.7 27.5 224 681-939 168-398 (504)
131 TIGR02552 LcrH_SycD type III s 97.7 0.0004 8.8E-09 67.6 11.3 97 840-936 17-115 (135)
132 KOG1914 mRNA cleavage and poly 97.6 0.22 4.8E-06 57.4 35.0 413 360-797 19-500 (656)
133 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0014 3.1E-08 74.9 16.4 123 741-868 172-296 (395)
134 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0009 1.9E-08 76.6 14.6 119 809-932 174-294 (395)
135 PRK14720 transcript cleavage f 97.6 0.0053 1.1E-07 76.5 21.7 231 635-917 33-268 (906)
136 PF13812 PPR_3: Pentatricopept 97.6 0.00011 2.3E-09 52.6 4.3 34 361-394 1-34 (34)
137 PF13812 PPR_3: Pentatricopept 97.5 0.00014 2.9E-09 52.1 4.4 33 463-495 2-34 (34)
138 COG5010 TadD Flp pilus assembl 97.5 0.0065 1.4E-07 63.8 18.3 153 775-930 72-226 (257)
139 PLN02789 farnesyltranstransfer 97.5 0.037 8E-07 62.2 25.5 209 364-579 40-267 (320)
140 cd00189 TPR Tetratricopeptide 97.4 0.0012 2.5E-08 58.4 10.4 92 843-934 3-96 (100)
141 PF01535 PPR: PPR repeat; Int 97.4 0.00016 3.4E-09 50.5 3.6 31 362-392 1-31 (31)
142 KOG2053 Mitochondrial inherita 97.4 0.64 1.4E-05 56.9 42.9 159 771-933 438-606 (932)
143 KOG3081 Vesicle coat complex C 97.3 0.074 1.6E-06 56.1 23.3 144 744-924 114-259 (299)
144 PF01535 PPR: PPR repeat; Int 97.3 0.00022 4.7E-09 49.7 3.4 30 463-492 1-30 (31)
145 TIGR02552 LcrH_SycD type III s 97.3 0.0035 7.6E-08 60.9 13.0 113 791-907 5-120 (135)
146 KOG1538 Uncharacterized conser 97.3 0.023 4.9E-07 65.9 20.5 216 615-899 617-844 (1081)
147 KOG3081 Vesicle coat complex C 97.2 0.045 9.9E-07 57.6 20.4 172 553-731 94-270 (299)
148 PF09976 TPR_21: Tetratricopep 97.2 0.0057 1.2E-07 60.5 13.5 114 817-931 24-143 (145)
149 PF12895 Apc3: Anaphase-promot 97.2 0.00039 8.5E-09 61.6 4.2 78 853-931 2-83 (84)
150 PF13414 TPR_11: TPR repeat; P 97.2 0.00082 1.8E-08 56.9 5.8 64 871-934 2-66 (69)
151 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.0043 9.3E-08 58.5 10.9 93 843-935 5-105 (119)
152 PF13432 TPR_16: Tetratricopep 97.1 0.0011 2.4E-08 55.4 5.8 59 878-936 3-61 (65)
153 PLN03088 SGT1, suppressor of 97.1 0.0057 1.2E-07 70.2 13.6 86 849-934 11-98 (356)
154 PRK14720 transcript cleavage f 97.1 0.082 1.8E-06 66.3 24.1 217 431-696 31-251 (906)
155 COG3898 Uncharacterized membra 97.0 0.64 1.4E-05 51.6 27.2 240 681-932 133-389 (531)
156 PRK10153 DNA-binding transcrip 97.0 0.016 3.4E-07 69.5 16.8 150 766-947 334-493 (517)
157 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.0065 1.4E-07 57.3 11.0 103 808-910 6-114 (119)
158 KOG2053 Mitochondrial inherita 97.0 1.6 3.4E-05 53.7 46.1 183 270-457 55-252 (932)
159 PF09976 TPR_21: Tetratricopep 97.0 0.022 4.8E-07 56.3 14.8 114 782-898 24-144 (145)
160 PRK02603 photosystem I assembl 96.9 0.0074 1.6E-07 61.6 10.9 94 841-934 36-148 (172)
161 KOG3060 Uncharacterized conser 96.9 0.063 1.4E-06 56.2 17.2 160 744-906 58-225 (289)
162 CHL00033 ycf3 photosystem I as 96.9 0.0067 1.4E-07 61.7 10.4 93 840-932 35-139 (168)
163 KOG2041 WD40 repeat protein [G 96.8 0.97 2.1E-05 53.5 27.6 124 744-878 929-1063(1189)
164 KOG0553 TPR repeat-containing 96.8 0.013 2.7E-07 62.9 11.7 90 815-907 92-184 (304)
165 PF10037 MRP-S27: Mitochondria 96.8 0.011 2.4E-07 68.1 12.2 118 599-716 67-186 (429)
166 PF10037 MRP-S27: Mitochondria 96.8 0.01 2.2E-07 68.4 11.7 82 464-545 105-186 (429)
167 PRK10153 DNA-binding transcrip 96.7 0.018 3.9E-07 69.1 14.0 49 888-936 400-450 (517)
168 KOG0550 Molecular chaperone (D 96.7 0.02 4.4E-07 63.4 12.6 90 847-936 256-351 (486)
169 PF08579 RPM2: Mitochondrial r 96.6 0.014 3.1E-07 53.3 9.4 81 464-544 27-116 (120)
170 PF14938 SNAP: Soluble NSF att 96.6 0.13 2.8E-06 57.1 19.4 63 843-905 158-229 (282)
171 PRK15331 chaperone protein Sic 96.6 0.024 5.3E-07 55.9 11.8 90 845-934 42-133 (165)
172 cd00189 TPR Tetratricopeptide 96.6 0.016 3.5E-07 50.8 10.0 59 845-903 39-99 (100)
173 KOG1538 Uncharacterized conser 96.6 0.18 3.9E-06 58.8 19.9 229 494-766 553-801 (1081)
174 PLN03088 SGT1, suppressor of 96.6 0.024 5.1E-07 65.1 13.2 103 814-919 12-117 (356)
175 PRK02603 photosystem I assembl 96.5 0.04 8.7E-07 56.2 13.5 129 769-921 35-166 (172)
176 KOG0553 TPR repeat-containing 96.5 0.0077 1.7E-07 64.5 8.2 90 847-936 88-179 (304)
177 PF13431 TPR_17: Tetratricopep 96.5 0.0016 3.4E-08 46.6 2.1 33 895-927 2-34 (34)
178 CHL00033 ycf3 photosystem I as 96.5 0.077 1.7E-06 53.8 15.4 108 770-905 36-153 (168)
179 KOG2041 WD40 repeat protein [G 96.5 2.3 5E-05 50.5 28.1 225 344-625 678-905 (1189)
180 PF06239 ECSIT: Evolutionarily 96.5 0.013 2.7E-07 60.3 9.1 97 450-546 33-152 (228)
181 PF14559 TPR_19: Tetratricopep 96.5 0.003 6.5E-08 53.2 4.0 53 883-935 2-54 (68)
182 PF13432 TPR_16: Tetratricopep 96.5 0.0071 1.5E-07 50.4 6.2 61 846-906 3-65 (65)
183 PF13371 TPR_9: Tetratricopept 96.5 0.0064 1.4E-07 52.0 6.0 58 879-936 2-59 (73)
184 KOG3060 Uncharacterized conser 96.4 0.17 3.6E-06 53.1 16.8 159 772-934 55-219 (289)
185 PF06239 ECSIT: Evolutionarily 96.4 0.014 3.1E-07 59.9 8.8 96 587-682 34-152 (228)
186 COG3898 Uncharacterized membra 96.4 0.67 1.4E-05 51.5 21.9 176 751-932 97-289 (531)
187 PF05843 Suf: Suppressor of fo 96.3 0.061 1.3E-06 59.6 14.2 132 771-905 3-140 (280)
188 PF14559 TPR_19: Tetratricopep 96.2 0.0064 1.4E-07 51.2 4.3 62 852-913 3-66 (68)
189 PRK10866 outer membrane biogen 96.1 0.6 1.3E-05 50.5 20.1 169 744-933 38-239 (243)
190 PF05843 Suf: Suppressor of fo 96.1 0.097 2.1E-06 57.9 14.2 140 499-642 3-149 (280)
191 PF12895 Apc3: Anaphase-promot 96.0 0.0098 2.1E-07 52.6 4.9 79 782-864 2-82 (84)
192 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.021 4.6E-07 65.2 8.6 65 871-935 74-141 (453)
193 PF07079 DUF1347: Protein of u 96.0 4 8.6E-05 46.6 32.4 204 598-810 298-531 (549)
194 PF14938 SNAP: Soluble NSF att 96.0 3.4 7.4E-05 45.8 27.4 93 774-866 160-263 (282)
195 PF08579 RPM2: Mitochondrial r 96.0 0.051 1.1E-06 49.8 9.1 45 602-646 29-74 (120)
196 COG4235 Cytochrome c biogenesi 96.0 0.07 1.5E-06 57.7 11.8 101 838-938 154-259 (287)
197 KOG2280 Vacuolar assembly/sort 95.8 6.7 0.00014 47.5 28.1 105 745-865 691-795 (829)
198 COG4700 Uncharacterized protei 95.7 0.72 1.6E-05 46.1 16.5 129 800-932 85-219 (251)
199 KOG1920 IkappaB kinase complex 95.6 5.1 0.00011 50.9 26.8 153 752-932 894-1052(1265)
200 PF04840 Vps16_C: Vps16, C-ter 95.5 5.5 0.00012 44.8 29.5 107 573-695 183-289 (319)
201 PF13414 TPR_11: TPR repeat; P 95.5 0.018 3.8E-07 48.6 4.4 64 840-903 3-69 (69)
202 PF12688 TPR_5: Tetratrico pep 95.5 0.14 3E-06 48.6 10.7 87 846-932 7-101 (120)
203 PRK10803 tol-pal system protei 95.5 0.072 1.6E-06 58.1 10.0 93 842-934 145-245 (263)
204 PRK10866 outer membrane biogen 95.4 1.3 2.8E-05 47.9 19.4 58 469-527 39-99 (243)
205 PF13281 DUF4071: Domain of un 95.4 1 2.3E-05 51.1 19.0 160 744-906 147-339 (374)
206 KOG4555 TPR repeat-containing 95.3 0.12 2.6E-06 48.4 9.0 90 848-937 51-146 (175)
207 COG0457 NrfG FOG: TPR repeat [ 95.2 4.2 9.1E-05 41.7 26.0 194 738-935 59-265 (291)
208 PF13428 TPR_14: Tetratricopep 95.1 0.031 6.7E-07 42.6 4.0 42 873-914 2-43 (44)
209 PF13371 TPR_9: Tetratricopept 95.0 0.064 1.4E-06 45.7 6.4 64 848-911 3-68 (73)
210 PF12688 TPR_5: Tetratrico pep 95.0 0.31 6.6E-06 46.2 11.3 91 775-865 7-100 (120)
211 PRK15363 pathogenicity island 94.9 0.44 9.6E-06 47.0 12.4 91 743-835 40-134 (157)
212 KOG1130 Predicted G-alpha GTPa 94.9 0.088 1.9E-06 58.3 8.2 129 806-934 197-343 (639)
213 COG4700 Uncharacterized protei 94.9 0.37 8E-06 48.1 11.7 104 832-935 81-189 (251)
214 PF03704 BTAD: Bacterial trans 94.8 0.36 7.8E-06 47.6 12.1 106 814-933 16-123 (146)
215 KOG2796 Uncharacterized conser 94.7 1.2 2.7E-05 46.9 15.3 164 741-905 139-319 (366)
216 KOG0543 FKBP-type peptidyl-pro 94.3 0.28 6.2E-06 55.0 10.6 83 873-981 258-340 (397)
217 KOG2280 Vacuolar assembly/sort 94.3 17 0.00037 44.2 30.6 308 365-693 441-795 (829)
218 PF04840 Vps16_C: Vps16, C-ter 94.2 12 0.00025 42.2 31.6 107 533-655 178-284 (319)
219 PF13424 TPR_12: Tetratricopep 94.2 0.061 1.3E-06 46.6 4.2 60 874-933 7-73 (78)
220 PRK10803 tol-pal system protei 94.1 0.7 1.5E-05 50.4 13.2 92 815-906 154-251 (263)
221 PF04184 ST7: ST7 protein; In 93.7 0.7 1.5E-05 53.3 12.4 153 781-945 180-334 (539)
222 PF12921 ATP13: Mitochondrial 93.6 0.52 1.1E-05 45.1 9.7 84 804-887 2-103 (126)
223 KOG2796 Uncharacterized conser 93.6 3.6 7.7E-05 43.6 16.2 139 398-539 179-326 (366)
224 PF09205 DUF1955: Domain of un 93.2 5.5 0.00012 37.8 15.1 140 780-938 13-152 (161)
225 PF13525 YfiO: Outer membrane 93.1 6.5 0.00014 41.2 18.1 151 368-527 12-171 (203)
226 KOG3941 Intermediate in Toll s 93.1 0.38 8.2E-06 51.0 8.4 63 585-647 52-121 (406)
227 KOG3941 Intermediate in Toll s 93.0 0.45 9.8E-06 50.5 8.7 97 450-546 53-172 (406)
228 PF13424 TPR_12: Tetratricopep 92.9 0.11 2.4E-06 45.0 3.6 59 843-901 8-75 (78)
229 KOG0550 Molecular chaperone (D 92.8 8 0.00017 43.8 18.2 54 777-830 257-313 (486)
230 PRK11906 transcriptional regul 92.7 3.9 8.5E-05 47.3 16.5 158 770-931 252-432 (458)
231 smart00299 CLH Clathrin heavy 92.6 6.3 0.00014 38.4 16.2 130 462-610 7-137 (140)
232 COG0457 NrfG FOG: TPR repeat [ 92.6 14 0.00029 37.8 27.5 219 682-904 37-268 (291)
233 PF12921 ATP13: Mitochondrial 92.2 0.33 7.2E-06 46.4 6.2 97 738-850 2-98 (126)
234 PF13525 YfiO: Outer membrane 92.2 6.3 0.00014 41.3 16.5 21 607-627 14-34 (203)
235 PRK11906 transcriptional regul 91.9 1.9 4.2E-05 49.8 12.8 117 819-935 273-401 (458)
236 COG5107 RNA14 Pre-mRNA 3'-end 91.8 28 0.00061 39.9 34.3 436 428-905 39-535 (660)
237 COG5107 RNA14 Pre-mRNA 3'-end 91.8 28 0.00062 39.9 36.1 80 327-409 40-122 (660)
238 PLN03098 LPA1 LOW PSII ACCUMUL 91.8 0.62 1.3E-05 53.6 8.7 95 840-937 75-176 (453)
239 KOG0543 FKBP-type peptidyl-pro 91.7 3.1 6.7E-05 47.0 13.8 93 842-934 259-354 (397)
240 PF03704 BTAD: Bacterial trans 91.7 0.55 1.2E-05 46.2 7.5 69 464-533 64-137 (146)
241 smart00299 CLH Clathrin heavy 91.5 5.4 0.00012 38.8 14.2 82 637-726 11-92 (140)
242 KOG2066 Vacuolar assembly/sort 91.3 44 0.00095 41.1 27.2 145 431-598 392-536 (846)
243 PF08631 SPO22: Meiosis protei 91.0 28 0.00061 38.4 23.3 19 880-898 254-272 (278)
244 COG1729 Uncharacterized protei 90.7 1.5 3.1E-05 47.2 9.6 90 843-935 145-244 (262)
245 PF13512 TPR_18: Tetratricopep 90.5 2.2 4.8E-05 41.4 9.8 59 850-908 20-83 (142)
246 PF00515 TPR_1: Tetratricopept 90.4 0.33 7.2E-06 34.3 3.2 32 873-904 2-33 (34)
247 PF04184 ST7: ST7 protein; In 90.1 15 0.00034 42.7 17.6 96 810-905 265-379 (539)
248 KOG2066 Vacuolar assembly/sort 90.1 56 0.0012 40.2 23.9 47 569-615 394-440 (846)
249 COG3118 Thioredoxin domain-con 90.0 6.9 0.00015 42.5 14.0 119 814-935 144-265 (304)
250 KOG1920 IkappaB kinase complex 89.9 54 0.0012 42.3 23.2 84 676-770 973-1058(1265)
251 PF07719 TPR_2: Tetratricopept 89.8 0.53 1.1E-05 33.1 3.9 33 873-905 2-34 (34)
252 PF04053 Coatomer_WDAD: Coatom 89.6 3.8 8.2E-05 48.3 12.9 106 807-936 298-403 (443)
253 KOG1130 Predicted G-alpha GTPa 89.5 14 0.00029 41.8 16.0 50 507-557 27-80 (639)
254 KOG1941 Acetylcholine receptor 89.1 9.1 0.0002 42.5 14.1 115 814-928 132-268 (518)
255 KOG1585 Protein required for f 88.8 20 0.00044 37.9 15.7 199 706-929 34-250 (308)
256 KOG2114 Vacuolar assembly/sort 88.8 71 0.0015 39.7 27.7 174 334-524 339-517 (933)
257 PF10300 DUF3808: Protein of u 88.7 14 0.00031 44.1 17.2 114 817-933 246-374 (468)
258 PF07035 Mic1: Colon cancer-as 88.6 19 0.00041 36.3 15.1 123 653-786 14-137 (167)
259 PF13281 DUF4071: Domain of un 88.1 46 0.001 38.1 19.6 26 841-866 306-331 (374)
260 PF07035 Mic1: Colon cancer-as 88.1 25 0.00055 35.3 15.6 124 482-616 14-138 (167)
261 PF04053 Coatomer_WDAD: Coatom 88.0 6.4 0.00014 46.4 13.4 131 600-763 297-427 (443)
262 COG4105 ComL DNA uptake lipopr 87.9 39 0.00084 36.3 17.6 167 749-934 45-232 (254)
263 KOG1258 mRNA processing protei 87.5 72 0.0016 38.3 30.0 180 737-921 296-490 (577)
264 KOG2114 Vacuolar assembly/sort 87.4 86 0.0019 39.0 34.0 202 441-661 378-589 (933)
265 KOG4234 TPR repeat-containing 86.9 2.1 4.5E-05 43.5 7.1 89 848-936 103-198 (271)
266 PF13512 TPR_18: Tetratricopep 86.3 11 0.00023 36.8 11.4 18 888-905 115-132 (142)
267 COG4235 Cytochrome c biogenesi 86.1 13 0.00028 40.6 13.2 109 429-540 154-268 (287)
268 PF00637 Clathrin: Region in C 86.1 0.14 3.1E-06 50.2 -1.4 128 538-683 13-140 (143)
269 COG4105 ComL DNA uptake lipopr 85.9 54 0.0012 35.2 18.8 56 775-832 173-232 (254)
270 PF02259 FAT: FAT domain; Int 85.9 38 0.00083 38.4 18.4 67 870-936 144-214 (352)
271 PF10300 DUF3808: Protein of u 85.8 34 0.00073 40.9 18.1 156 672-830 192-373 (468)
272 COG3118 Thioredoxin domain-con 85.5 44 0.00095 36.6 16.6 154 776-932 141-299 (304)
273 KOG2610 Uncharacterized conser 85.1 6.6 0.00014 43.1 10.2 159 781-942 115-283 (491)
274 KOG2610 Uncharacterized conser 85.0 18 0.00039 39.8 13.4 178 750-932 115-312 (491)
275 COG1729 Uncharacterized protei 83.9 8.9 0.00019 41.3 10.6 62 844-905 182-248 (262)
276 COG4785 NlpI Lipoprotein NlpI, 83.7 33 0.00072 35.6 13.9 179 748-934 75-265 (297)
277 PF02259 FAT: FAT domain; Int 83.1 63 0.0014 36.6 18.5 148 768-918 145-304 (352)
278 PF00637 Clathrin: Region in C 82.8 0.13 2.9E-06 50.5 -3.4 121 635-784 9-140 (143)
279 KOG4279 Serine/threonine prote 82.6 20 0.00044 43.3 13.6 204 654-906 184-400 (1226)
280 KOG4555 TPR repeat-containing 82.6 2.9 6.4E-05 39.5 5.6 56 880-935 51-106 (175)
281 PRK09687 putative lyase; Provi 82.4 85 0.0018 34.7 26.6 139 564-714 139-278 (280)
282 PF09205 DUF1955: Domain of un 82.1 39 0.00084 32.4 12.6 60 467-527 91-150 (161)
283 PF04097 Nic96: Nup93/Nic96; 82.0 90 0.002 38.8 20.1 21 678-701 515-535 (613)
284 PF13176 TPR_7: Tetratricopept 81.7 2.1 4.5E-05 30.8 3.5 26 908-933 1-26 (36)
285 PF13181 TPR_8: Tetratricopept 81.7 1.6 3.5E-05 30.6 2.9 31 874-904 3-33 (34)
286 PF13170 DUF4003: Protein of u 81.6 22 0.00047 39.7 13.1 19 552-570 82-100 (297)
287 PF13170 DUF4003: Protein of u 79.4 30 0.00065 38.5 13.3 49 378-426 79-133 (297)
288 PRK15331 chaperone protein Sic 79.2 16 0.00034 36.6 9.7 82 443-525 49-133 (165)
289 PF09613 HrpB1_HrpK: Bacterial 79.1 8.6 0.00019 38.2 7.9 55 882-936 20-74 (160)
290 PF13428 TPR_14: Tetratricopep 78.9 5.6 0.00012 30.0 5.3 37 464-501 3-39 (44)
291 KOG4648 Uncharacterized conser 77.3 3.9 8.4E-05 44.8 5.3 113 811-930 104-219 (536)
292 PF13176 TPR_7: Tetratricopept 77.1 2.6 5.7E-05 30.3 2.8 28 874-901 1-28 (36)
293 TIGR02561 HrpB1_HrpK type III 76.1 11 0.00023 36.9 7.4 53 884-936 22-74 (153)
294 PF09613 HrpB1_HrpK: Bacterial 76.0 61 0.0013 32.3 12.8 88 814-904 20-109 (160)
295 COG4649 Uncharacterized protei 75.9 26 0.00057 35.1 10.0 121 779-900 68-195 (221)
296 KOG0276 Vesicle coat complex C 75.1 33 0.00072 40.8 12.2 148 751-932 599-747 (794)
297 KOG0403 Neoplastic transformat 74.9 1.7E+02 0.0036 33.9 22.2 61 637-698 513-573 (645)
298 KOG2396 HAT (Half-A-TPR) repea 74.9 1.8E+02 0.0039 34.3 32.4 238 652-904 301-563 (568)
299 COG3629 DnrI DNA-binding trans 74.8 18 0.00039 39.6 9.6 71 431-501 153-231 (280)
300 COG2976 Uncharacterized protei 74.3 83 0.0018 32.4 13.4 111 787-905 70-192 (207)
301 PF04097 Nic96: Nup93/Nic96; 73.6 2.4E+02 0.0052 35.1 25.7 58 436-493 116-183 (613)
302 PF08631 SPO22: Meiosis protei 73.6 1.5E+02 0.0032 32.7 25.3 62 464-526 86-150 (278)
303 COG1747 Uncharacterized N-term 73.2 1.2E+02 0.0026 35.7 15.7 94 461-559 65-158 (711)
304 PF10602 RPN7: 26S proteasome 73.1 32 0.00068 35.2 10.6 93 739-831 37-140 (177)
305 KOG1586 Protein required for f 72.5 1.1E+02 0.0023 32.5 13.8 18 747-764 23-40 (288)
306 KOG4648 Uncharacterized conser 71.9 17 0.00037 40.0 8.4 79 776-865 104-183 (536)
307 KOG4570 Uncharacterized conser 71.5 27 0.00058 38.3 9.7 96 733-832 59-163 (418)
308 PF14853 Fis1_TPR_C: Fis1 C-te 71.2 7.8 0.00017 30.8 4.3 30 877-906 6-35 (53)
309 PF00515 TPR_1: Tetratricopept 70.7 8.8 0.00019 26.8 4.3 32 770-803 2-33 (34)
310 KOG1941 Acetylcholine receptor 70.5 29 0.00062 38.8 9.8 122 744-865 128-271 (518)
311 PF10602 RPN7: 26S proteasome 70.3 54 0.0012 33.5 11.5 96 770-867 37-140 (177)
312 COG4649 Uncharacterized protei 69.6 1.3E+02 0.0028 30.4 15.7 118 748-866 68-193 (221)
313 KOG4570 Uncharacterized conser 69.4 30 0.00065 37.9 9.5 94 430-527 63-165 (418)
314 KOG0276 Vesicle coat complex C 68.9 31 0.00068 41.0 10.2 148 580-763 599-746 (794)
315 KOG1585 Protein required for f 68.3 1.7E+02 0.0037 31.3 15.5 103 500-624 34-136 (308)
316 COG3629 DnrI DNA-binding trans 68.2 18 0.0004 39.5 7.9 61 874-934 155-215 (280)
317 PF07721 TPR_4: Tetratricopept 67.8 7 0.00015 25.8 3.0 24 907-930 2-25 (26)
318 PF06552 TOM20_plant: Plant sp 67.4 21 0.00046 36.1 7.4 45 888-932 51-99 (186)
319 PF13374 TPR_10: Tetratricopep 66.9 9.3 0.0002 27.9 3.9 28 907-934 3-30 (42)
320 PF14669 Asp_Glu_race_2: Putat 66.6 1.6E+02 0.0035 30.2 14.4 176 662-866 2-207 (233)
321 PRK12798 chemotaxis protein; R 66.6 2.5E+02 0.0055 32.5 21.4 179 751-932 125-321 (421)
322 PF07719 TPR_2: Tetratricopept 65.3 10 0.00022 26.3 3.6 29 907-935 2-30 (34)
323 KOG1464 COP9 signalosome, subu 63.5 2.2E+02 0.0048 30.7 18.1 233 648-885 42-317 (440)
324 PF10345 Cohesin_load: Cohesin 63.4 3.7E+02 0.0081 33.4 39.1 94 432-526 60-168 (608)
325 PF13929 mRNA_stabil: mRNA sta 62.8 2.4E+02 0.0052 31.1 14.9 58 428-485 199-261 (292)
326 PF10345 Cohesin_load: Cohesin 62.3 3.9E+02 0.0084 33.2 39.4 190 360-559 29-252 (608)
327 KOG1550 Extracellular protein 61.9 3.8E+02 0.0081 32.9 21.9 44 887-934 490-537 (552)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 61.9 29 0.00063 31.2 6.4 49 865-913 35-83 (103)
329 KOG1586 Protein required for f 61.6 1E+02 0.0022 32.7 11.1 14 580-593 27-40 (288)
330 PRK09687 putative lyase; Provi 61.3 2.6E+02 0.0056 30.9 28.9 192 327-525 35-233 (280)
331 PRK10941 hypothetical protein; 61.2 26 0.00056 38.4 7.5 62 874-935 183-244 (269)
332 smart00028 TPR Tetratricopepti 61.1 14 0.0003 24.1 3.7 31 874-904 3-33 (34)
333 PF02284 COX5A: Cytochrome c o 59.0 31 0.00067 31.4 6.2 48 866-913 39-86 (108)
334 COG2909 MalT ATP-dependent tra 58.2 5E+02 0.011 33.1 22.4 187 748-938 425-650 (894)
335 KOG1550 Extracellular protein 58.2 4.3E+02 0.0093 32.4 20.7 119 613-735 308-429 (552)
336 PF13181 TPR_8: Tetratricopept 58.2 19 0.00041 24.9 4.0 28 907-934 2-29 (34)
337 PHA02875 ankyrin repeat protei 58.1 2.9E+02 0.0063 32.2 16.5 20 438-457 72-91 (413)
338 TIGR02508 type_III_yscG type I 57.8 75 0.0016 28.9 8.2 78 412-492 21-98 (115)
339 PF13174 TPR_6: Tetratricopept 57.8 12 0.00025 25.7 2.8 28 908-935 2-29 (33)
340 PF06552 TOM20_plant: Plant sp 56.4 71 0.0015 32.5 8.9 44 888-938 96-139 (186)
341 PHA02875 ankyrin repeat protei 55.2 4E+02 0.0086 31.0 19.1 87 573-668 138-230 (413)
342 cd00923 Cyt_c_Oxidase_Va Cytoc 55.0 67 0.0015 29.0 7.4 60 377-438 23-83 (103)
343 PF04190 DUF410: Protein of un 54.9 3.2E+02 0.0068 29.8 16.5 81 736-833 88-170 (260)
344 TIGR02508 type_III_yscG type I 54.7 1.3E+02 0.0029 27.4 9.2 87 310-401 21-107 (115)
345 PF02284 COX5A: Cytochrome c o 54.1 1.1E+02 0.0023 28.1 8.6 59 686-745 28-86 (108)
346 PF13374 TPR_10: Tetratricopep 53.3 26 0.00056 25.4 4.3 27 771-797 4-30 (42)
347 PRK15180 Vi polysaccharide bio 52.9 75 0.0016 36.8 9.3 110 791-904 312-423 (831)
348 KOG2063 Vacuolar assembly/sort 52.0 6.4E+02 0.014 32.5 25.4 27 600-626 506-532 (877)
349 PF13174 TPR_6: Tetratricopept 52.0 17 0.00036 24.9 2.9 28 877-904 5-32 (33)
350 PF13431 TPR_17: Tetratricopep 51.5 15 0.00033 26.0 2.5 22 496-517 12-33 (34)
351 KOG4234 TPR repeat-containing 50.6 1.4E+02 0.003 30.9 9.8 29 881-909 177-205 (271)
352 TIGR02561 HrpB1_HrpK type III 50.4 1.9E+02 0.0042 28.5 10.5 20 507-526 54-73 (153)
353 KOG0890 Protein kinase of the 49.7 1E+03 0.022 34.1 32.8 147 572-727 1388-1542(2382)
354 COG3947 Response regulator con 49.4 4E+02 0.0087 29.4 16.1 43 614-658 149-191 (361)
355 KOG1308 Hsp70-interacting prot 49.3 13 0.00028 41.2 2.7 88 853-940 127-216 (377)
356 KOG2063 Vacuolar assembly/sort 48.8 7.1E+02 0.015 32.1 24.1 128 670-815 506-637 (877)
357 KOG1258 mRNA processing protei 48.3 5.8E+02 0.013 30.9 30.6 129 360-491 44-180 (577)
358 PF07575 Nucleopor_Nup85: Nup8 48.0 6.1E+02 0.013 31.2 18.3 90 569-660 374-465 (566)
359 COG1747 Uncharacterized N-term 47.9 5.5E+02 0.012 30.6 19.7 165 737-908 65-241 (711)
360 KOG2034 Vacuolar sorting prote 47.5 7.1E+02 0.015 31.7 22.7 178 602-798 508-696 (911)
361 PF14853 Fis1_TPR_C: Fis1 C-te 46.7 1E+02 0.0022 24.5 6.7 27 908-934 3-29 (53)
362 COG3947 Response regulator con 45.7 60 0.0013 35.4 6.8 60 875-934 282-341 (361)
363 PF11207 DUF2989: Protein of u 44.3 89 0.0019 32.4 7.7 70 857-926 123-198 (203)
364 PF13934 ELYS: Nuclear pore co 43.6 3.6E+02 0.0079 28.7 12.7 107 771-886 78-186 (226)
365 PRK13342 recombination factor 42.8 5.3E+02 0.012 30.2 15.2 47 772-818 230-279 (413)
366 PF04190 DUF410: Protein of un 42.3 4.9E+02 0.011 28.4 16.3 81 566-661 89-169 (260)
367 PF14561 TPR_20: Tetratricopep 42.2 45 0.00098 29.8 4.7 42 893-934 9-50 (90)
368 KOG0376 Serine-threonine phosp 41.9 18 0.0004 41.9 2.6 90 814-906 14-106 (476)
369 PF09986 DUF2225: Uncharacteri 41.3 93 0.002 32.9 7.6 62 874-935 120-194 (214)
370 KOG0545 Aryl-hydrocarbon recep 40.7 83 0.0018 33.5 6.8 88 847-934 185-292 (329)
371 PF04910 Tcf25: Transcriptiona 40.3 6.3E+02 0.014 29.1 17.8 88 812-903 111-224 (360)
372 PRK15180 Vi polysaccharide bio 40.3 1.4E+02 0.003 34.7 9.0 135 816-955 301-438 (831)
373 PF07721 TPR_4: Tetratricopept 40.0 43 0.00093 22.0 3.2 21 742-762 5-25 (26)
374 KOG4507 Uncharacterized conser 39.6 1.2E+02 0.0026 36.3 8.5 98 817-917 620-721 (886)
375 COG4455 ImpE Protein of avirul 38.2 80 0.0017 33.1 6.2 62 844-905 5-68 (273)
376 COG4455 ImpE Protein of avirul 38.1 1.2E+02 0.0027 31.7 7.5 62 464-526 3-64 (273)
377 smart00028 TPR Tetratricopepti 37.3 57 0.0012 20.8 3.8 28 907-934 2-29 (34)
378 PF11768 DUF3312: Protein of u 37.1 2.4E+02 0.0051 33.9 10.6 56 742-797 412-472 (545)
379 PF09477 Type_III_YscG: Bacter 36.5 3E+02 0.0065 25.6 8.7 80 410-492 20-99 (116)
380 PF11207 DUF2989: Protein of u 36.3 1.7E+02 0.0037 30.4 8.2 43 716-758 153-198 (203)
381 PF15469 Sec5: Exocyst complex 35.9 3.3E+02 0.0072 27.7 10.7 23 810-832 92-114 (182)
382 PF09477 Type_III_YscG: Bacter 35.5 3.4E+02 0.0074 25.2 8.9 78 547-627 21-98 (116)
383 PRK11619 lytic murein transgly 35.4 9.9E+02 0.021 29.9 35.9 378 324-740 94-513 (644)
384 KOG1464 COP9 signalosome, subu 35.2 6.2E+02 0.013 27.5 13.3 178 752-929 41-254 (440)
385 KOG4642 Chaperone-dependent E3 35.0 81 0.0017 33.5 5.7 80 854-933 24-105 (284)
386 TIGR02710 CRISPR-associated pr 34.3 4.3E+02 0.0093 30.5 11.9 30 778-807 139-168 (380)
387 KOG3364 Membrane protein invol 34.1 1.6E+02 0.0035 28.5 7.0 25 881-905 80-104 (149)
388 KOG0292 Vesicle coat complex C 33.8 49 0.0011 41.2 4.4 47 850-899 653-699 (1202)
389 KOG0890 Protein kinase of the 33.4 1.7E+03 0.037 32.1 33.3 153 440-604 1392-1552(2382)
390 PF13762 MNE1: Mitochondrial s 33.2 3.5E+02 0.0077 26.6 9.5 51 359-409 77-128 (145)
391 PF09670 Cas_Cas02710: CRISPR- 32.8 4E+02 0.0087 30.9 11.8 52 780-832 142-197 (379)
392 PHA03100 ankyrin repeat protei 32.7 8.8E+02 0.019 28.7 15.5 9 387-395 54-62 (480)
393 KOG0551 Hsp90 co-chaperone CNS 32.4 1.4E+02 0.0031 33.2 7.3 91 842-932 83-179 (390)
394 PF15161 Neuropep_like: Neurop 32.4 21 0.00046 28.1 0.8 18 1030-1048 11-28 (65)
395 PF14561 TPR_20: Tetratricopep 32.2 3.1E+02 0.0067 24.4 8.4 62 871-932 21-85 (90)
396 KOG2168 Cullins [Cell cycle co 31.4 1.2E+03 0.026 29.7 19.5 390 436-870 330-737 (835)
397 PF14669 Asp_Glu_race_2: Putat 31.1 6.1E+02 0.013 26.2 13.8 144 491-662 2-161 (233)
398 PF13762 MNE1: Mitochondrial s 30.9 1.6E+02 0.0036 28.8 6.8 80 228-307 40-128 (145)
399 PF07163 Pex26: Pex26 protein; 30.4 4.3E+02 0.0093 29.0 10.3 88 776-866 90-184 (309)
400 PF11838 ERAP1_C: ERAP1-like C 30.2 7.9E+02 0.017 27.2 19.2 214 597-829 17-262 (324)
401 PRK13800 putative oxidoreducta 29.8 1.4E+03 0.03 29.9 27.9 26 588-613 625-650 (897)
402 smart00386 HAT HAT (Half-A-TPR 29.7 68 0.0015 21.4 3.1 29 886-914 1-29 (33)
403 COG4976 Predicted methyltransf 29.5 78 0.0017 33.4 4.5 57 849-905 4-62 (287)
404 KOG0687 26S proteasome regulat 29.4 8.2E+02 0.018 27.5 12.3 92 739-832 105-209 (393)
405 PF14427 Pput2613-deam: Pput_2 29.4 1.3E+02 0.0029 27.6 5.4 59 1001-1059 44-102 (118)
406 KOG2062 26S proteasome regulat 29.2 1.2E+03 0.027 29.1 30.3 550 369-934 67-672 (929)
407 COG5159 RPN6 26S proteasome re 29.1 8.1E+02 0.017 27.0 12.4 95 602-696 129-234 (421)
408 PF14863 Alkyl_sulf_dimr: Alky 28.2 1.7E+02 0.0037 28.6 6.5 63 856-921 57-119 (141)
409 COG5108 RPO41 Mitochondrial DN 28.1 2.1E+02 0.0046 34.7 8.2 73 603-678 33-113 (1117)
410 PF07720 TPR_3: Tetratricopept 28.1 87 0.0019 22.7 3.3 30 875-904 4-35 (36)
411 KOG3824 Huntingtin interacting 27.4 88 0.0019 34.2 4.6 62 850-911 126-189 (472)
412 cd08819 CARD_MDA5_2 Caspase ac 26.1 3.5E+02 0.0076 24.1 7.2 40 750-790 48-87 (88)
413 COG2976 Uncharacterized protei 25.8 7.7E+02 0.017 25.6 13.6 87 713-799 99-189 (207)
414 KOG3364 Membrane protein invol 25.8 3.2E+02 0.007 26.5 7.5 66 801-866 29-97 (149)
415 TIGR01228 hutU urocanate hydra 25.8 6.3E+02 0.014 30.0 11.2 46 476-534 208-253 (545)
416 PF10366 Vps39_1: Vacuolar sor 25.7 2.6E+02 0.0056 26.0 6.9 27 600-626 41-67 (108)
417 PF12968 DUF3856: Domain of Un 25.6 5.9E+02 0.013 24.2 9.9 22 911-932 105-126 (144)
418 PF07163 Pex26: Pex26 protein; 25.4 3.9E+02 0.0084 29.3 8.9 85 675-761 90-181 (309)
419 PF04910 Tcf25: Transcriptiona 25.3 8.4E+02 0.018 28.0 12.6 64 871-934 99-167 (360)
420 PF10579 Rapsyn_N: Rapsyn N-te 24.7 1.2E+02 0.0026 26.4 4.1 45 817-861 19-64 (80)
421 PF12862 Apc5: Anaphase-promot 24.5 1.6E+02 0.0034 26.4 5.2 51 883-933 9-68 (94)
422 KOG0686 COP9 signalosome, subu 24.2 1.2E+03 0.025 27.2 14.0 159 433-595 152-332 (466)
423 KOG2396 HAT (Half-A-TPR) repea 24.0 1.3E+03 0.028 27.6 32.5 76 380-457 90-166 (568)
424 PRK13800 putative oxidoreducta 23.9 1.7E+03 0.037 29.1 25.9 239 350-610 625-864 (897)
425 TIGR03504 FimV_Cterm FimV C-te 23.8 1.5E+02 0.0033 22.6 4.1 23 368-390 6-28 (44)
426 PRK10564 maltose regulon perip 23.8 1.2E+02 0.0026 33.4 5.0 46 359-404 254-300 (303)
427 COG5159 RPN6 26S proteasome re 23.5 1E+03 0.022 26.2 13.5 44 779-822 13-63 (421)
428 PF10366 Vps39_1: Vacuolar sor 23.2 3.2E+02 0.0069 25.3 7.1 26 570-595 42-67 (108)
429 KOG3807 Predicted membrane pro 23.1 5.2E+02 0.011 28.8 9.4 122 768-908 272-398 (556)
430 PF11663 Toxin_YhaV: Toxin wit 23.1 71 0.0015 30.7 2.7 34 779-814 105-138 (140)
431 PF11768 DUF3312: Protein of u 22.9 7E+02 0.015 30.1 11.2 57 435-491 412-473 (545)
432 PF14689 SPOB_a: Sensor_kinase 22.9 1.5E+02 0.0032 24.4 4.2 27 806-832 25-51 (62)
433 PHA02878 ankyrin repeat protei 22.7 1.3E+03 0.029 27.3 17.1 18 440-457 76-93 (477)
434 KOG4077 Cytochrome c oxidase, 22.6 2.7E+02 0.0059 26.6 6.2 40 865-904 77-116 (149)
435 PF14689 SPOB_a: Sensor_kinase 22.3 1.7E+02 0.0036 24.1 4.5 46 649-696 6-51 (62)
436 PF06957 COPI_C: Coatomer (COP 21.9 1.1E+02 0.0024 35.7 4.5 43 863-905 289-333 (422)
437 PF11846 DUF3366: Domain of un 21.7 2E+02 0.0043 29.6 6.1 35 869-903 141-175 (193)
438 PF11848 DUF3368: Domain of un 21.2 2.7E+02 0.0058 21.6 5.1 33 372-404 13-45 (48)
439 PF11663 Toxin_YhaV: Toxin wit 20.9 99 0.0022 29.8 3.2 29 682-712 109-137 (140)
440 TIGR03504 FimV_Cterm FimV C-te 20.7 1.9E+02 0.0041 22.0 4.1 22 776-797 6-27 (44)
441 KOG2659 LisH motif-containing 20.7 5.3E+02 0.012 27.4 8.7 91 772-865 29-128 (228)
442 PF09670 Cas_Cas02710: CRISPR- 20.5 6.8E+02 0.015 29.0 10.7 52 814-867 141-196 (379)
443 PF07575 Nucleopor_Nup85: Nup8 20.3 1.6E+03 0.035 27.4 16.0 35 409-448 310-344 (566)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-145 Score=1390.30 Aligned_cols=807 Identities=31% Similarity=0.530 Sum_probs=792.5
Q ss_pred CCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHH
Q 038364 254 FSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKC 333 (1076)
Q Consensus 254 ~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~ 333 (1076)
+.++..++|++|.+|++.|.+ ++|+.+|.+|.+.|+.|+..||..++++|.+.+.++.|.++|+.+++.|..+++.++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~-~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQL-EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 456778899999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcH
Q 038364 334 ALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFH 413 (1076)
Q Consensus 334 ~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~ 413 (1076)
+|+++|+++|+++.|+++|++|++ ||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++.
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~-~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCC-CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 038364 414 EGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRI 493 (1076)
Q Consensus 414 ~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~ 493 (1076)
.|.++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 038364 494 QPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSL 573 (1076)
Q Consensus 494 ~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aL 573 (1076)
.||..||+.+|.++++.|+.+.|.+++..|.+.|+.||..+|++++.+|++.|+++.|.++++.|. .+|..+||++
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~l 360 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAM 360 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999985 5789999999
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCCh
Q 038364 574 MDMYVKNDCLQNAQEVFDNMKN----RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQS 649 (1076)
Q Consensus 574 i~~y~k~g~~~~A~~lf~~m~~----~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~ 649 (1076)
|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++++.|.+.|+.||..+||+||++|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 9999999999999999999964 899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHH
Q 038364 650 KEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLC 729 (1076)
Q Consensus 650 ~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~ 729 (1076)
++|.++|++|.+ +|.++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|+++.++++|..+
T Consensus 441 ~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 441 DKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 999999999974 6899999999999999999999999999986 69999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 038364 730 LKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTA 809 (1076)
Q Consensus 730 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ 809 (1076)
.+.|+.+|..++|+|+++|+|+|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCch
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e 889 (1076)
+|++|++.|++++|.++|++|.+++|+.|+..||++|+++|+|+|+++||++++++|+++||..+|++|+++|+.||+.+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999997889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEEEeCCCCCcCcHHHH
Q 038364 890 YAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIY 969 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~~~~~~i~ 969 (1076)
.|+.+++++++++|+++.+|+.|+++|++.|+|++|.++++.|+++|++|+||+|||++++++|.|.++|.+||+.++||
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~ 754 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEIN 754 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCcccCCCccccccchhhhhhhhhhccHHHHHHHHhccCCCCCcEEEEeccccCchhHHHHHHHHhhc
Q 038364 970 FELYHLVSEMKKLGYVPDTRCVYQDIDEEEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVR 1049 (1076)
Q Consensus 970 ~~l~~l~~~m~~~G~~pd~~~~~~~~~~~~k~~~~~~hse~la~a~gl~~~~~~~~i~v~knlr~c~dch~~~k~~s~~~ 1049 (1076)
..|++|..+|++.||+||+++++ |++|++|++.+++||||||||||||+||+|+||||+||||||+|||+++||||||+
T Consensus 755 ~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~ 833 (857)
T PLN03077 755 TVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIV 833 (857)
T ss_pred HHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHh
Confidence 99999999999999999999988 55889999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecCCccccccCCcccCCC
Q 038364 1050 GREIFLRDGARFHHFREGECSCND 1073 (1076)
Q Consensus 1050 ~r~i~vrd~~rfh~f~~g~csc~d 1073 (1076)
||||||||++|||||+||+|||||
T Consensus 834 ~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 834 RREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-121 Score=1142.53 Aligned_cols=612 Identities=33% Similarity=0.620 Sum_probs=576.1
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHH
Q 038364 359 EDDLLWNEIIMVKLRNEKWENAIKLFREMQFSS-AKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCL 437 (1076)
Q Consensus 359 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~L 437 (1076)
++.++|+++|.+|++.|++++|+++|+.|...+ +.||..||++++.+|++.++++.|.++|..+.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 688899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 038364 438 ISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVL 517 (1076)
Q Consensus 438 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al 517 (1076)
|++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~----------------------- 221 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD----------------------- 221 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-----------------------
Confidence 999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCC
Q 038364 518 TLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRN 597 (1076)
Q Consensus 518 ~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d 597 (1076)
||..||+.++.+|++.|..+.|+++|..+.+.|+.+|..++|+||++|+|+|++++|.++|++|.++|
T Consensus 222 ------------p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~ 289 (697)
T PLN03081 222 ------------AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289 (697)
T ss_pred ------------CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHH
Q 038364 598 IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISG 677 (1076)
Q Consensus 598 ~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~ 677 (1076)
+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p---------------------------------------------- 323 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI---------------------------------------------- 323 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC----------------------------------------------
Confidence 7777777777777777776666666666555444
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH
Q 038364 678 SLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSA 757 (1076)
Q Consensus 678 ~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A 757 (1076)
|..||++++.+|++.|++++|+++|..+.+.|+.+|..++++|+++|+++|++++|
T Consensus 324 ------------------------d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A 379 (697)
T PLN03081 324 ------------------------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379 (697)
T ss_pred ------------------------CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence 44444444445555555555555555566667788888999999999999999999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 038364 758 REVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNII 837 (1076)
Q Consensus 758 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~ 837 (1076)
.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|++|++.|++++|.++|+.|.+++|+.
T Consensus 380 ~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 380 RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 838 PTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 838 p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
|+..+|++||++|+++|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|+
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHHCCcccCCCccccccch
Q 038364 918 MSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDE 997 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~G~~pd~~~~~~~~~~ 997 (1076)
+.|+|++|.+++++|+++|++|.||+|||++++++|.|.++|.+||+..+||.++.++..+|++.||+||+.+++||+++
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~ 619 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE 619 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccHHHHHHHHhccCCCCCcEEEEeccccCchhHHHHHHHHhhcCceEEEecCCccccccCCcccCCCCC
Q 038364 998 EEKGKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECSCNDCW 1075 (1076)
Q Consensus 998 ~~k~~~~~~hse~la~a~gl~~~~~~~~i~v~knlr~c~dch~~~k~~s~~~~r~i~vrd~~rfh~f~~g~csc~d~w 1075 (1076)
++|++.+++||||||||||||++|+|+||||+||||||+|||+++|||||++||||||||++|||||+||+|||||||
T Consensus 620 ~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 620 DEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred HHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-86 Score=846.63 Aligned_cols=621 Identities=25% Similarity=0.361 Sum_probs=460.5
Q ss_pred hhHHhhhccCCchhHHHHHHHHHHhCCCCCCchhhhHHHHHHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCCh
Q 038364 196 CFLNETNKFRCLSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEV 275 (1076)
Q Consensus 196 ~~l~~~~~~~~~~~~~~~h~~~~~~g~~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~ 275 (1076)
.+++.|.+.+.+..|.++|+++++.|.. ++++++|.|+++|+++|++++|+++|++|++||+++||++|.+|++.|.+
T Consensus 91 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~- 168 (857)
T PLN03077 91 ALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYF- 168 (857)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCH-
Confidence 4667888999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhc
Q 038364 276 QELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEV 355 (1076)
Q Consensus 276 ~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m 355 (1076)
++|+++|.+|...|+.||.+||+.+|++|++.+++..|+++|+.+++.|+.+|++++|+||++|+++|++++|+++|++|
T Consensus 169 ~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHH
Q 038364 356 SDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCN 435 (1076)
Q Consensus 356 ~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n 435 (1076)
++ +|+++||+||.+|+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|+++|..+.+.|+.||..+||
T Consensus 249 ~~-~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 249 PR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CC-CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 038364 436 CLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQN 515 (1076)
Q Consensus 436 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~ 515 (1076)
+||++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll----------- 396 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL----------- 396 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999985555555544
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 038364 516 VLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN 595 (1076)
Q Consensus 516 Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~ 595 (1076)
.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+|+|++++|.++|++|.+
T Consensus 397 ------------------------~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 397 ------------------------SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred ------------------------HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 45555555555555555555555555555555555555555555555555555555
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHH
Q 038364 596 RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLI 675 (1076)
Q Consensus 596 ~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI 675 (1076)
+|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|+++.+.+++..|.+.|+.+|..++|+||
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi 531 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHH
Confidence 5555555555555555555555555555543 345555555555555555555555555555555555555555555555
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 038364 676 SGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 676 ~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~ 755 (1076)
++|++.|++++|.++|++| .||..+|++++.+|++.|+.++|.+++++|.+.|+.||..+|++++.+|++.|+++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 5555555555555555544 34555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHhcC-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038364 756 SAREVFRKSA-----NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSM 830 (1076)
Q Consensus 756 ~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m 830 (1076)
+|.++|+.|. .|+..+|+.|+.+|++.|+.++|.+++++|. ++||..+|.+|+.+|...|+++.|+...+.+
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5555555554 2444555555555555555555555555542 4555555555555555555555555444444
Q ss_pred hhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 831 STDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 831 ~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
.+ +.|+ ...|..|.++|++.|++++|.++.+.|
T Consensus 684 ~~---l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 684 FE---LDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred Hh---hCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 32 2333 334444455555555555555555554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.8e-71 Score=688.20 Aligned_cols=510 Identities=25% Similarity=0.396 Sum_probs=474.3
Q ss_pred CCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCC-CCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHH
Q 038364 254 FSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKG-VIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLK 332 (1076)
Q Consensus 254 ~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~ 332 (1076)
..++.++||++|.+|.+.|++ ++|+++|+.|...+ +.||.+||+.++++|++.++++.|.++|..+.+.|+.||++++
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~-~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRH-REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 356778999999999999999 99999999999865 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc
Q 038364 333 CALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAF 412 (1076)
Q Consensus 333 ~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~ 412 (1076)
|+|+++|+++|++++|+++|++|++ ||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~-~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPE-RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCC-CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 038364 413 HEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSR 492 (1076)
Q Consensus 413 ~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g 492 (1076)
+.|+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHH
Q 038364 493 IQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTS 572 (1076)
Q Consensus 493 ~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~a 572 (1076)
+. ||..||++++.+|++.|++++|+++|+.+.+.|+.+|..++|+
T Consensus 321 ~~-----------------------------------pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 321 VS-----------------------------------IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred CC-----------------------------------CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 88 7777777777888888888888888888888888899999999
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHH
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEA 652 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A 652 (1076)
||++|+|+|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|++|++.|++++|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHh-cCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 038364 653 LVIIHHMKN-SGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLK 731 (1076)
Q Consensus 653 ~~lf~~m~~-~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~ 731 (1076)
.++|+.|.+ .|+.|+..+|++||++|++.|++++|.+++++| ++.||..+|++++.+|...|+++.|+.+++.+.+
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 999999986 799999999999999999999999999999988 5899999999999999999999999999999875
Q ss_pred cCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh-----HHHH-------HHHHHHHHcCCHHH----HHHHHHH
Q 038364 732 NGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSANKTL-----ASWN-------CMIMGFAIYGNGKE----AILLFHE 794 (1076)
Q Consensus 732 ~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-----~s~n-------~li~~~~~~g~~~~----Al~l~~~ 794 (1076)
+.| +..+|+.|+++|++.|++++|.++++.|.++++ .+|. .++.+...|.+.++ ..++..+
T Consensus 523 --~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 600 (697)
T PLN03081 523 --MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKE 600 (697)
T ss_pred --CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHH
Confidence 555 467999999999999999999999999987654 3553 23444444554433 4567778
Q ss_pred HHHCCCCCCHH
Q 038364 795 LLETGFQPDAI 805 (1076)
Q Consensus 795 M~~~g~~Pd~~ 805 (1076)
|.+.|..||..
T Consensus 601 ~~~~gy~~~~~ 611 (697)
T PLN03081 601 ISEYGYVAEEN 611 (697)
T ss_pred HHHcCCCCCcc
Confidence 88888888864
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.9e-68 Score=663.89 Aligned_cols=528 Identities=17% Similarity=0.236 Sum_probs=488.3
Q ss_pred CCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhH-----HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 038364 326 DFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLW-----NEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIV 400 (1076)
Q Consensus 326 ~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~-----n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~ 400 (1076)
.++...+..+++.|+++|++++|.++|++|+. ++.+.| +.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 46778899999999999999999999999998 766554 5567779999999999999999973 9999999
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcC----CCChhHHHHHHHHHHhCC
Q 038364 401 KMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMK----DHNLSSWNSMISSYTGLG 476 (1076)
Q Consensus 401 ~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~lI~~~~~~g 476 (1076)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999996 589999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh--cCCCCCcccHHHHHHHHHhcCchHHHHHH
Q 038364 477 YVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQS--LGFRPNGSSVSVVLQAVTELRLLKYGRES 554 (1076)
Q Consensus 477 ~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~--~gi~pd~~t~~~ll~a~~~~g~~~~a~~i 554 (1076)
++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.+||+++|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 67899999999999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038364 555 HGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN----RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630 (1076)
Q Consensus 555 ~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~----~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 630 (1076)
++.|.+.|+.|+..+||++|++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999985 79999999999999999999999999999999999
Q ss_pred CCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHH
Q 038364 631 PDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLL 710 (1076)
Q Consensus 631 pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL 710 (1076)
||..+|++||.+|+++|++++|.++|++|.+.|+.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHH----hhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMY----SKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGK 786 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y----~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~ 786 (1076)
.+|++.|+++.|.++|..|.+.|+.||..+|++|++++ .++++..++...|+.+...+...|+ +
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------S 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------H
Confidence 99999999999999999999999999999999999874 4455555555555544444444554 4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 787 EAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 787 ~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
+|+.+|++|.+.|+.||.+||+.+|.+++..+..+.+..+++.|... +..|+..+|+++|+++++. .++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 69999999999999999999999998777888888888888887654 6778888999999998542 47899999998
Q ss_pred ---CCCCCHH
Q 038364 867 ---PFKPDAT 873 (1076)
Q Consensus 867 ---~~~pd~~ 873 (1076)
++.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 5667654
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-65 Score=639.37 Aligned_cols=522 Identities=15% Similarity=0.150 Sum_probs=437.8
Q ss_pred CCchhhhHHHHHHHccCChhhHHHHhhhcCCCCcccHHH-----HHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHH
Q 038364 225 NSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSS-----FLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTI 299 (1076)
Q Consensus 225 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~wn~-----li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ 299 (1076)
.+...+..+++.|+++|++++|+++|+.|+.++++.|+. ++.+|.+.|.. ++|+.+|+.|.. ||.+||+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~-~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV-KEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH-HHHHHHHHHcCC----CCHHHHHH
Confidence 566778889999999999999999999999888777654 55668888988 999999999975 99999999
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCC---CCChhhHHHHHHHHHhCCC
Q 038364 300 ILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD---LEDDLLWNEIIMVKLRNEK 376 (1076)
Q Consensus 300 ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~---~~d~~s~n~li~~~~~~g~ 376 (1076)
+|++|++.|+++.|.++|+.|.+.|+.||.++||+||++|+++|++++|.++|++|.+ .+|+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999999999999999999999999984 2799999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 038364 377 WENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLK--SALESNLSVCNCLISMYSRNNKLELATRVF 454 (1076)
Q Consensus 377 ~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~--~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf 454 (1076)
+++|+++|++|...|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.||..+|++||++|+++|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 578899999999999999999988888888
Q ss_pred HhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 038364 455 DSMKD----HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP 530 (1076)
Q Consensus 455 ~~m~~----~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p 530 (1076)
++|.+ ++.++||++|.+|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88854 45678888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCHhHHHHHHH
Q 038364 531 NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN----RNIVAWNSLIS 606 (1076)
Q Consensus 531 d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~----~d~~~~n~lI~ 606 (1076)
|..+|+++|.+|++.|++++|.++|..|.+.|+.||..+||+||++|++.|++++|.++|++|.. ||..+|+++|.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888887753 77788888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHh--cCCCCchHHHHHHHHHHhcCCCh
Q 038364 607 GYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKN--SGIYPNVVTWTSLISGSLQNENY 684 (1076)
Q Consensus 607 ~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~--~gi~pd~~ty~~LI~~~~~~g~~ 684 (1076)
+|++.|+.++|.++|.+|.+.|+.||..+|++|+.+|.+ ++++|.++.+.+.. .+...+. .+..
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~------------n~w~ 828 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIE------------NKWT 828 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccc------------cchH
Confidence 888888888888888888888888888888887765432 34444444333321 1111111 2234
Q ss_pred hHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhc
Q 038364 685 RESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKS 764 (1076)
Q Consensus 685 ~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 764 (1076)
++|+.+|++|.+.|+.||..||+.+|.+++..+..+.+..+++.+...+..++..+|++||+++++. .++|..+|++|
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 5689999999999999999999999977777788888888888777777888888999999987432 46799999888
Q ss_pred CCC
Q 038364 765 ANK 767 (1076)
Q Consensus 765 ~~~ 767 (1076)
...
T Consensus 907 ~~~ 909 (1060)
T PLN03218 907 ASL 909 (1060)
T ss_pred HHc
Confidence 764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.6e-35 Score=379.56 Aligned_cols=715 Identities=13% Similarity=0.031 Sum_probs=541.6
Q ss_pred ccCCchhHHHHHHHHHHhCCCCCCchhhhHHHHHHHccCChhhHHHHhhhc---CCCCcccHHHHHHHHHhCCCChHHHH
Q 038364 203 KFRCLSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLY---FSRSYADWSSFLEDYESFGGEVQELL 279 (1076)
Q Consensus 203 ~~~~~~~~~~~h~~~~~~g~~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~---~~~~~~~wn~li~~~~~~g~~~~~al 279 (1076)
..+.+..+......++...- .+......+...+...|++++|.++++.+ ..++...|..+...+...|++ ++|+
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~ 213 (899)
T TIGR02917 137 GLGQLELAQKSYEQALAIDP--RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNI-ELAL 213 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH-HHHH
Confidence 44566666666666654432 33445556666677777777777777665 233445666666667777777 7777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCC-
Q 038364 280 EVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDL- 358 (1076)
Q Consensus 280 ~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~- 358 (1076)
..|.+..+... .+..++..+...+...|+++.|.+.+..+.+.... +..........+...|++++|...|++....
T Consensus 214 ~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 214 AAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSA 291 (899)
T ss_pred HHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 77777665432 23445555666666777777777777776665432 2223333333455667777777777665430
Q ss_pred C-ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHH
Q 038364 359 E-DDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCL 437 (1076)
Q Consensus 359 ~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~L 437 (1076)
+ +...+..+...+.+.|++++|...|+++.... +.+...+..+...+...|+++.|.+.+..+++... .+..+++.+
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 369 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLL 369 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 1 22334444555667777778877777776543 23445556666677777888888888777776542 356677777
Q ss_pred HHHHHhCCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 038364 438 ISMYSRNNKLELATRVFDSMKD---HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQ 514 (1076)
Q Consensus 438 i~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~ 514 (1076)
...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|.+.|+++.+.... +...+..++..+.+.|+++
T Consensus 370 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 8888888888888888877643 34556777777788888888888888887766544 3455666777888888888
Q ss_pred hHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 038364 515 NVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594 (1076)
Q Consensus 515 ~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~ 594 (1076)
+|+++++++.... .++..++..+...+...|++++|.+.+..+.+... .+...+..+..+|.+.|++++|.+.|+++.
T Consensus 449 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888887653 23556777888888899999999999998887653 345667778889999999999999998876
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHH
Q 038364 595 N---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTW 671 (1076)
Q Consensus 595 ~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty 671 (1076)
. .+..++..+...+.+.|+.++|...|+++.+.+ ..+...+..+...|.+.|++++|..+++.+.+. ...+...|
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 604 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAW 604 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHH
Confidence 4 467788889999999999999999999987764 335567778889999999999999999998764 24567889
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKS 751 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~ 751 (1076)
..+...|.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|..++..+.+. .+.+...+..++..+.+.
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999997642 335567788888888999999999999998874 234577888999999999
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 752 GNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
|++++|.++++.+.+ .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998875 35567888899999999999999999999984 5666777888889999999999999999
Q ss_pred HhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 829 SMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 829 ~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+.+. .+.+...+..+...|.+.|+.++|.+.|+++ ..+++..+++.+...+...|+ ++|+..+++++++.|+++
T Consensus 761 ~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 761 AWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 98864 3445778889999999999999999999987 244567789999999999999 889999999999999999
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
..+..++.+|...|++++|.+.++++.+.+
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999997755
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.3e-35 Score=378.02 Aligned_cols=716 Identities=13% Similarity=0.028 Sum_probs=600.7
Q ss_pred HhhhccCCchhHHHHHHHHHHhCCCCCCchhhhHHHHHHHccCChhhHHHHhhhc---CCCCcccHHHHHHHHHhCCCCh
Q 038364 199 NETNKFRCLSSVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLY---FSRSYADWSSFLEDYESFGGEV 275 (1076)
Q Consensus 199 ~~~~~~~~~~~~~~~h~~~~~~g~~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~---~~~~~~~wn~li~~~~~~g~~~ 275 (1076)
......+++..+..+...+++... .+......+...|.+.|++++|...|+.. ...+...|..++..+...|++
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~- 243 (899)
T TIGR02917 167 QLALAENRFDEARALIDEVLTADP--GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEF- 243 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-
Confidence 334566788888888888776542 45566777788899999999999999976 345667888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhc
Q 038364 276 QELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEV 355 (1076)
Q Consensus 276 ~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m 355 (1076)
++|...+.++.+.... +..............|+++.|...+..+++.+.. +......+...|.+.|++++|...|+..
T Consensus 244 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 321 (899)
T TIGR02917 244 EEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQI 321 (899)
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999876432 2223323333445678999999999999887633 2233444556788899999999999876
Q ss_pred CC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHH
Q 038364 356 SD--LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSV 433 (1076)
Q Consensus 356 ~~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v 433 (1076)
.. ..+...+..+...+.+.|++++|+..++++.... +.+...+..+...+...|++++|.+.+..+.+... .+...
T Consensus 322 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 399 (899)
T TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAA 399 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHH
Confidence 43 1356778888999999999999999999998654 45677888889999999999999999999987653 35677
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038364 434 CNCLISMYSRNNKLELATRVFDSMKDH---NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH 510 (1076)
Q Consensus 434 ~n~Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~ 510 (1076)
+..+...|...|+.++|.+.|+.+... +...+..++..|.+.|++++|.++++++..... ++..+|+.+...+...
T Consensus 400 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhC
Confidence 888999999999999999999987532 345677788999999999999999999987644 3788999999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 038364 511 GSYQNVLTLLRGMQSLGFRPN-GSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589 (1076)
Q Consensus 511 g~~~~Al~l~~~m~~~gi~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~l 589 (1076)
|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.+..+.+.... +..++..+...|.+.|+.++|...
T Consensus 479 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998765 44 345666777888999999999999999987643 677889999999999999999999
Q ss_pred HhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCC
Q 038364 590 FDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYP 666 (1076)
Q Consensus 590 f~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~p 666 (1076)
|+++.. .+...+..++..|.+.|++++|.++++++.+.. ..+..+|..+...|.+.|++++|...|+.+.+.. +.
T Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 998854 456788899999999999999999999998754 4467789999999999999999999999998753 33
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLID 746 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~ 746 (1076)
+...|..+...|.+.|++++|.+.|+++.+. .+.+..++..+...+...|++++|..+++.+.+.. ..+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 6678999999999999999999999999864 23357788899999999999999999999998864 456778888999
Q ss_pred HHhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038364 747 MYSKSGNLKSAREVFRKSAN--KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGW 824 (1076)
Q Consensus 747 ~y~k~G~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~ 824 (1076)
.|.+.|++++|.+.|+.+.. ++..++..++..+.+.|+.++|.+.++++.+.. +.+...+..+...|...|+.++|.
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999998764 455778889999999999999999999999852 445667888888899999999999
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 825 KYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 825 ~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
++|+++.+. .++++..+..+..++.+.|+ ++|++++++. ... -+..+|..+...+...|++++|...++++++.+
T Consensus 791 ~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 791 KHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999864 24557789999999999999 8899999986 333 355678889999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 903 PCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 903 P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 868 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 868 PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999985
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=2.9e-34 Score=267.79 Aligned_cols=106 Identities=53% Similarity=0.956 Sum_probs=99.2
Q ss_pred ceEEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHHCCcccCCCccccccchhhh--------hhhhhhccHHHHH
Q 038364 942 VWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPDTRCVYQDIDEEEK--------GKVLLSHTEKLAI 1013 (1076)
Q Consensus 942 ~~swi~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~G~~pd~~~~~~~~~~~~k--------~~~~~~hse~la~ 1013 (1076)
||||+++ |.|++||.+||+. ++..+|...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899887 9999999999996 566788889999999999999888766 6799999999999
Q ss_pred HHHhccCCCCCcEEEEecc-ccCchhHHHHHHHHhhcCceEEEecCCcccccc
Q 038364 1014 VYGLMKTKSRAPIRVIKNT-RVCSDCHTAAKYMSLVRGREIFLRDGARFHHFR 1065 (1076)
Q Consensus 1014 a~gl~~~~~~~~i~v~knl-r~c~dch~~~k~~s~~~~r~i~vrd~~rfh~f~ 1065 (1076)
||||+++ ||+||+ |||+|||+|+|+||+++||||||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.3e-21 Score=256.66 Aligned_cols=636 Identities=11% Similarity=0.004 Sum_probs=381.3
Q ss_pred HHHHhCCCChHHHHHHHHHHHhCCCCC-CcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHH-------------
Q 038364 266 EDYESFGGEVQELLEVWGELHGKGVIF-RSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHL------------- 331 (1076)
Q Consensus 266 ~~~~~~g~~~~~al~lf~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~------------- 331 (1076)
+-....++. +.|.+.+.++... .| |...+......+...|+.++|.+..+.+.+.........
T Consensus 36 ~~~~~~~~~-d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 36 RLGEATHRE-DLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHhhCCh-HHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 344556677 7888888877654 33 344566666667777888888888887777663221110
Q ss_pred --HHHHHHHHhcCCChHHHHHHHhhcCCC-CChhhHHH--HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 332 --KCALMNFYGKCRDVESANKLFSEVSDL-EDDLLWNE--IIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQAC 406 (1076)
Q Consensus 332 --~~~Li~~y~k~g~~~~A~~vf~~m~~~-~d~~s~n~--li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~ 406 (1076)
.-.+...+.+.|++++|.+.|+..... ++...... ........|+.++|++.|+++.+.. +-+......+...+
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 111223455666666666666655430 11111100 0011112466666666666665542 22333444455555
Q ss_pred HccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 038364 407 AKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFN 486 (1076)
Q Consensus 407 ~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~ 486 (1076)
...|+.++|.+.++.+.+..... ..............+....+ +..+...+..+-.....++|...+.
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~-~~aa~~~~~~l~~~~~~~~~-----------~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGR-DAAAQLWYGQIKDMPVSDAS-----------VAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCch-HHHHHHHHHHHhccCCChhh-----------HHHHHHHHHHCCCchHHHHHHHHHH
Confidence 55666666666666554422100 00000000000000000000 0011111111111112233333333
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCC
Q 038364 487 KMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP-NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDY 565 (1076)
Q Consensus 487 ~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~ 565 (1076)
++......|+... ......+...|++++|+..|++..+.. | |...+..+-.++.+.|++++|...+..+++.....
T Consensus 260 ~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 260 EQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 3322222222111 122333444455555555555544433 3 22333344444445555555555555544433221
Q ss_pred ch-h------------HHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038364 566 DL-Y------------VGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEI 629 (1076)
Q Consensus 566 d~-~------------v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~ 629 (1076)
.. . ....+...+.+.|++++|...|++... .+...+..+...|.+.|++++|++.|++..+..
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~- 415 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD- 415 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 10 0 112234556778888888888887764 355667777788888888888888888887653
Q ss_pred CCC-ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCC--------CchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCC
Q 038364 630 KPD-LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIY--------PNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIK 700 (1076)
Q Consensus 630 ~pd-~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~--------pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~ 700 (1076)
|+ ...+..+...|. .++.++|..+++.+...... -....+..+...+...|++++|++.|++..+ ..
T Consensus 416 -p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~ 491 (1157)
T PRK11447 416 -PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LD 491 (1157)
T ss_pred -CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC
Confidence 33 334555555553 45678888777765432100 0122455677788889999999999999886 35
Q ss_pred CC-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC----hH-----
Q 038364 701 PN-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKT----LA----- 770 (1076)
Q Consensus 701 pd-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d----~~----- 770 (1076)
|+ ...+..+...+...|++++|...++.+++.. ..+...+..+...+.+.|+.++|...++.+.... ..
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 54 4566777788889999999999999988742 2244455556667788999999999998876421 11
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHH
Q 038364 771 ----SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSC 845 (1076)
Q Consensus 771 ----s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~ 845 (1076)
.+..+...+...|+.++|+.+++. ..++...+..+...+...|+.++|.+.|+...+. .|+ ...+..
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~ 642 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLG 642 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 122456778899999999999872 2344456667777899999999999999999864 454 678889
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch------hHHHHHHHHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMP-FKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA------NYNLMMNLLA 917 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~-~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~------~y~~L~~~y~ 917 (1076)
++.+|...|+.++|++.++... ..| +..++..+..++...|++++|...++++++..|+++. .+..++.++.
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999873 444 4557778888899999999999999999998776543 5667799999
Q ss_pred HcCChHHHHHHHHHHHh
Q 038364 918 MSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~ 934 (1076)
+.|++++|.+.+++...
T Consensus 723 ~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 723 QTGQPQQALETYKDAMV 739 (1157)
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999999988753
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=9.4e-21 Score=248.70 Aligned_cols=252 Identities=11% Similarity=0.012 Sum_probs=163.0
Q ss_pred hhhhhhhcCChhHHHHHHHHhHhcCCCC-chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhcC
Q 038364 639 LVSGYSIWGQSKEALVIIHHMKNSGIYP-NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-STTMSSLLQTCGGL 716 (1076)
Q Consensus 639 Li~~y~k~g~~~~A~~lf~~m~~~gi~p-d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-~~t~~~lL~a~~~~ 716 (1076)
+...+...|++++|.+.|++..+. .| +...+..+...|.+.|++++|...++++.+. .|+ ...+..+...+...
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhC
Confidence 334444455555555555554442 12 2233444444555555555555555554431 221 11222222223334
Q ss_pred CCchhHHHHHHHHHHcCCCCC---------hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKD---------AYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKE 787 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d---------~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~ 787 (1076)
++.++|...+..+.+....++ ......+.+.|...|+.++|.++++.- ..+...+..+...+.+.|+.++
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 444444444443322111111 112234677888999999999999843 3455677888999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHh
Q 038364 788 AILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRT 865 (1076)
Q Consensus 788 Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~ 865 (1076)
|++.|++..+. .|+ ...+..+...+...|+.++|.+.++...+ ..|+ ...+..+..++.+.|+.++|.+++++
T Consensus 622 A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 622 ARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999984 565 45788888899999999999999998764 3444 45667788899999999999999998
Q ss_pred CC-C----CC---CHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038364 866 MP-F----KP---DATIWGALLGSCRIHGHLEYAEIASRRLFK 900 (1076)
Q Consensus 866 m~-~----~p---d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~ 900 (1076)
+. . .| +..++..+...+...|+.++|+..+++++.
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 72 1 12 234666677889999999999999999974
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1e-18 Score=219.54 Aligned_cols=642 Identities=10% Similarity=-0.001 Sum_probs=427.3
Q ss_pred ccCChhhHHHHhhhcC---CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHH
Q 038364 239 EFGDFTSAAKAFFLYF---SRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVE 315 (1076)
Q Consensus 239 ~~g~~~~A~~~f~~~~---~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 315 (1076)
..|++++|...|...- +.+...+..+...|.+.|+. ++|+..+++..+. .|+...+...+... ++...+..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~-~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHD-DRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 3589999998888753 23456778888889999999 9999998888765 45555555544333 77788888
Q ss_pred HHHHHHHhCCCCChHHHHHHHHH--------HhcCCChHHHHHHHhhcCCCCChh-hHHHHHHHHHhCCChhHHHHHHHH
Q 038364 316 VHASLIKRGFDFDVHLKCALMNF--------YGKCRDVESANKLFSEVSDLEDDL-LWNEIIMVKLRNEKWENAIKLFRE 386 (1076)
Q Consensus 316 ~~~~~~~~g~~~d~~~~~~Li~~--------y~k~g~~~~A~~vf~~m~~~~d~~-s~n~li~~~~~~g~~~eAl~lf~~ 386 (1076)
+++.+++... .+..++..|... |.+.+....|.+ .......++.. ..-.+...|.+.|++++|++++.+
T Consensus 130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 8888887653 344555555554 777766666666 22222212333 334447888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHc-cCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC-----C
Q 038364 387 MQFSSAKAISRTIVKMLQACAK-VGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD-----H 460 (1076)
Q Consensus 387 M~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~-----~ 460 (1076)
+.+.+.. +..-...+-.++.. .++ +.+..++.. .+..|..+..++.+.|.+.|+.++|.+++.+++. +
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 8887633 33335555556666 355 556665332 3446778888888888899999999888888753 3
Q ss_pred ChhHHHHHHHHHHhCCChH-HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHH
Q 038364 461 NLSSWNSMISSYTGLGYVD-VAWSLFNKMNSSRIQPDI-ITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVV 538 (1076)
Q Consensus 461 d~~s~n~lI~~~~~~g~~~-~A~~lf~~M~~~g~~pd~-~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~l 538 (1076)
+..+|--. +.+.+... .|..-|.+ ...++. ...-.++..+.+.++++.+.++.. +.|-.... .
T Consensus 282 ~~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~ 346 (987)
T PRK09782 282 QEKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--E 346 (987)
T ss_pred ccHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--H
Confidence 33344333 33433321 12111111 001011 111223667778888886665532 22333322 2
Q ss_pred HHHH--HhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C----CHhHHHHHHHHHHh
Q 038364 539 LQAV--TELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN--R----NIVAWNSLISGYCF 610 (1076)
Q Consensus 539 l~a~--~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~--~----d~~~~n~lI~~~~~ 610 (1076)
+... ...+...++.+.+..+.+.... +....--+.-...+.|+.++|.++|+..-. + +...-+-++..|.+
T Consensus 347 ~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 347 ERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 2222 2335666666666666665322 222233333445677888888888877654 1 23344567777777
Q ss_pred cCC---hHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHh-cCC-CC--chHHHHHHHHHHhcCCC
Q 038364 611 KGL---FVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKN-SGI-YP--NVVTWTSLISGSLQNEN 683 (1076)
Q Consensus 611 ~g~---~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~-~gi-~p--d~~ty~~LI~~~~~~g~ 683 (1076)
.+. ..+++.+-..+- ..+- +.-.|+..++....+.... .+. .+ +...|..+..++.. ++
T Consensus 426 ~~~~~~~~~~~~l~~~~~-------~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 426 HPYLATPAKVAILSKPLP-------LAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred CCcccchHHHHHhccccc-------cchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 776 334433332222 1111 1223344333333333322 111 23 56677878877776 88
Q ss_pred hhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHh
Q 038364 684 YRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRK 763 (1076)
Q Consensus 684 ~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 763 (1076)
.++|+..+.+... ..|+......+..++...|++++|...+..+... .|+...+..+...+.+.|+.++|.+.+++
T Consensus 492 ~~eAi~a~~~Al~--~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQ--RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHH--hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8899998887765 3466555444455556899999999999887653 44445566778888999999999999988
Q ss_pred cCCCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-
Q 038364 764 SANKTLASWNCM---IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT- 839 (1076)
Q Consensus 764 m~~~d~~s~n~l---i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~- 839 (1076)
..+.++..++.. .......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...+++..+ ..|+
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~ 642 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNN 642 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC
Confidence 776544333333 3334455999999999999998 678877888888899999999999999999875 3565
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...++.+...+...|+.++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++.......+++..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 567888889999999999999999986 3445 56689999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHH
Q 038364 918 MSNRWEDVERLRHSMD 933 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~ 933 (1076)
+..+++.|.+-+++--
T Consensus 723 ~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 723 QRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998777653
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=2.6e-18 Score=215.97 Aligned_cols=590 Identities=11% Similarity=0.005 Sum_probs=352.1
Q ss_pred CChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCC-CC-ChhhHHHHHHHHHhCCChhHHHHHHH
Q 038364 308 MAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD-LE-DDLLWNEIIMVKLRNEKWENAIKLFR 385 (1076)
Q Consensus 308 ~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~-~~-d~~s~n~li~~~~~~g~~~eAl~lf~ 385 (1076)
|+.++|...+..+++..... ..++..|...|.+.|+.++|+..+++... .| |...+..+ ..+ +++++|.++++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHH
Confidence 56666666666666554333 55666666666666666666666665543 01 22223322 222 66666666666
Q ss_pred HHHHCCCCCC-HHHHHHHHHH--------HHccCCcHHHHHHHHHHHHhCCCCCHHHHHHH-HHHHHhCCChHHHHHHHH
Q 038364 386 EMQFSSAKAI-SRTIVKMLQA--------CAKVGAFHEGKQIHGYVLKSALESNLSVCNCL-ISMYSRNNKLELATRVFD 455 (1076)
Q Consensus 386 ~M~~~g~~p~-~~t~~~ll~a--------~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~L-i~~y~k~g~~~~A~~lf~ 455 (1076)
++.... |+ ..++..+... +.+. +++.+.+. .......|+..+.... ...|.+.|++++|.+++.
T Consensus 133 ~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 133 ELLAQQ--KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHhC--CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 666542 22 2222222222 2222 44444444 2223333344444444 666666666666666666
Q ss_pred hcCCCC---hhHHHHHHHHHHhC-CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-C
Q 038364 456 SMKDHN---LSSWNSMISSYTGL-GYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFR-P 530 (1076)
Q Consensus 456 ~m~~~d---~~s~n~lI~~~~~~-g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~-p 530 (1076)
++.+.+ ..-+..+-..|.+. ++ +++..+++. .++-|...+..+...|.+.|+.++|.++++++...-.. |
T Consensus 207 ~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 207 EARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 664322 22234444455552 44 555555442 22235666666666666666666666666666543322 4
Q ss_pred CcccHHHHHHHHHhcCchHH-HHHHHHHHHHcCCCCc-hhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHH-
Q 038364 531 NGSSVSVVLQAVTELRLLKY-GRESHGYILRNGLDYD-LYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISG- 607 (1076)
Q Consensus 531 d~~t~~~ll~a~~~~g~~~~-a~~i~~~~~~~g~~~d-~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~- 607 (1076)
+..++.-++ .+.+.... +..-+.. .+.++ ....-.+++.+.+.+..+.|.++.+ ....+.. ..+..
T Consensus 282 ~~~~~~~~l---~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~r~~ 350 (987)
T PRK09782 282 QEKSWLYLL---SKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM---LEERYA 350 (987)
T ss_pred ccHHHHHHH---HhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH---HHHHHh
Confidence 443333332 22222210 0000000 00001 1122334677777777776666633 2222221 12221
Q ss_pred -HHhcCChHHHHHHHHHHHHcCCCC-CccchhhhhhhhhhcCChhHHHHHHHHhHh-c-CCCCchHHHHHHHHHHhcCCC
Q 038364 608 -YCFKGLFVNAKKMLNQMEEEEIKP-DLVSWNSLVSGYSIWGQSKEALVIIHHMKN-S-GIYPNVVTWTSLISGSLQNEN 683 (1076)
Q Consensus 608 -~~~~g~~~~A~~lf~~M~~~g~~p-d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~-~-gi~pd~~ty~~LI~~~~~~g~ 683 (1076)
....+...++.+.++.|.+.. | +....--+--...+.|+.++|.++|+.... . ...++...-+-++..|.+.+.
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 122355556666666665441 2 222222222234466777777777777654 1 122233444456666666655
Q ss_pred ---hhHHHHH-------------------------HHHHhhcCCCC---ChhhHHHHHHHHhcCCCchhHHHHHHHHHHc
Q 038364 684 ---YRESLKF-------------------------FIQMQQEDIKP---NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN 732 (1076)
Q Consensus 684 ---~~eAl~l-------------------------~~~m~~~gi~p---d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~ 732 (1076)
..+|+.+ +.... +..| +...|..+..++.. +..++|...+......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 2233222 22222 2223 34455555555554 7888899988777763
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 038364 733 GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN--KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT-FTA 809 (1076)
Q Consensus 733 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ 809 (1076)
.|+......+...+...|++++|...|+++.. ++...|..+...+.+.|+.++|...|++..+. .|+... +..
T Consensus 506 --~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~ 581 (987)
T PRK09782 506 --QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWW 581 (987)
T ss_pred --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHH
Confidence 46654444455666799999999999997764 44556777888899999999999999999985 455543 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCC
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGH 887 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~ 887 (1076)
+.......|++++|...+++..+ +.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 34455567999999999999874 4678889999999999999999999999987 45555 5577888889999999
Q ss_pred chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 888 LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.++|+..++++++++|+++..+..++.+|...|++++|+..+++..+..
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999986543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-17 Score=183.78 Aligned_cols=448 Identities=16% Similarity=0.178 Sum_probs=285.2
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 038364 436 CLISMYSRNNKLELATRVFDSMKDHNLS---SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGS 512 (1076)
Q Consensus 436 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~---s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~ 512 (1076)
.|..-..+.|++++|.+--..+-..|.. ..-.+-.++.+..+.+....--....+...+ -..+|..+.+.+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHhch
Confidence 3444445566666666655444322211 1111223444444444443332222222222 45566666677777777
Q ss_pred hhhHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhCCCHHHHHHHH
Q 038364 513 YQNVLTLLRGMQSLGFRPN-GSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLY-VGTSLMDMYVKNDCLQNAQEVF 590 (1076)
Q Consensus 513 ~~~Al~l~~~m~~~gi~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~-v~~aLi~~y~k~g~~~~A~~lf 590 (1076)
+++|+.+++.|.+.. |+ ...|..+-.++...|+.+.|.+.+...++.. |+.. +.+-+-+..-..|++++|...+
T Consensus 132 ~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 777777777766644 43 2334444444555555555555555444432 2211 1222333333445555555554
Q ss_pred hhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCc-h
Q 038364 591 DNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKP-DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPN-V 668 (1076)
Q Consensus 591 ~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~p-d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd-~ 668 (1076)
.+.. +. .| =.+.|+.|...+-..|++..|+..|++..+. .|+ .
T Consensus 208 lkAi-------------------------------~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~ 252 (966)
T KOG4626|consen 208 LKAI-------------------------------ET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFL 252 (966)
T ss_pred HHHH-------------------------------hh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcch
Confidence 4433 22 12 2344555555555555555555555555432 232 2
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 038364 669 VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD-AYVATGLID 746 (1076)
Q Consensus 669 ~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~ 746 (1076)
..|-.|...|...+.+++|+..+.+... ..|+ .+.+..+...|-..|.++.|...+++.++ ..|+ ...|+.|.+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLAN 328 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHH
Confidence 3455555556666666666666666553 3454 34566666666677777777777777766 4444 456777888
Q ss_pred HHhhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 038364 747 MYSKSGNLKSAREVFRKSAN--K-TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEE 822 (1076)
Q Consensus 747 ~y~k~G~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~e 822 (1076)
++...|+..+|.+.+++... + -..+.|.|...|...|.+++|..+|....+ +.|+-. .++.|.+.|-+.|++++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHH
Confidence 88888888888888776553 2 235677788888888888888888888887 677764 67888888999999999
Q ss_pred HHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 823 GWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA-TIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 823 A~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
|...+++.. .+.|+ ...|+.|...|-..|+.++|.+.+.+. .+.|.- ...+.|...++..|++.+|+..++.++
T Consensus 407 Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 407 AIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 999988875 57888 568899999999999999999999886 566754 478899999999999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 900 KLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 900 ~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+++|+.+.+|..+...+.-...|.+-.+.++++
T Consensus 484 klkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 484 KLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred ccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999999888888887744444443
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=2.5e-17 Score=192.51 Aligned_cols=300 Identities=16% Similarity=0.138 Sum_probs=203.7
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchH
Q 038364 470 SSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLK 549 (1076)
Q Consensus 470 ~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~ 549 (1076)
..+...|++++|++.|.++.+.+.. +..+|..+...+.+.|++++|..+++.+...+ +....
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~-------------- 104 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRP---DLTRE-------------- 104 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---CCCHH--------------
Confidence 3455677888888888888776543 55677777777777788888887777776542 11000
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 550 YGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 550 ~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
....++..+...|.+.|++++|..+|+++.+ .+..+++.++..|.+.|++++|.+.++.+.+
T Consensus 105 ---------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 105 ---------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred ---------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 0123466778888999999999999988865 4667888899999999999999999999887
Q ss_pred cCCCCCc----cchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC
Q 038364 627 EEIKPDL----VSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN 702 (1076)
Q Consensus 627 ~g~~pd~----~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd 702 (1076)
.+..++. ..+..+...+.+.|++++|.+.|+++.+.. ..+...+..+...|.+.|++++|.++|+++.+.+....
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 6533221 134556677788889999999888887642 22455777788888888888888888888876432222
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHH
Q 038364 703 STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN--KTLASWNCMIMGFA 780 (1076)
Q Consensus 703 ~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~s~n~li~~~~ 780 (1076)
..++..+..++...|++++|...+..+.+. .|+...+..++..|.+.|++++|.++++++.+ |+..+++.++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 345566666666667777777766666653 34444556666666666666666666665442 45556665555544
Q ss_pred H---cCCHHHHHHHHHHHHHCCCCCCHH
Q 038364 781 I---YGNGKEAILLFHELLETGFQPDAI 805 (1076)
Q Consensus 781 ~---~g~~~~Al~l~~~M~~~g~~Pd~~ 805 (1076)
. +|+.++++.++++|.+.+++|+..
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 446666666666666655555544
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.77 E-value=2.6e-16 Score=175.29 Aligned_cols=381 Identities=14% Similarity=0.160 Sum_probs=315.5
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 038364 542 VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAK 618 (1076)
Q Consensus 542 ~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~ 618 (1076)
+.+..+++...+--...++.... -..+|..+.+.|-..|++++|...++.+.+ +.+..|-.+..++...|+.+.|.
T Consensus 92 ~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~ 170 (966)
T KOG4626|consen 92 FFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAV 170 (966)
T ss_pred hhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccH
Confidence 34444444444333333333222 345677889999999999999999998876 46789999999999999999999
Q ss_pred HHHHHHHHcCCCCCccchhh-hhhhhhhcCChhHHHHHHHHhHhcCCCCc-hHHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 038364 619 KMLNQMEEEEIKPDLVSWNS-LVSGYSIWGQSKEALVIIHHMKNSGIYPN-VVTWTSLISGSLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 619 ~lf~~M~~~g~~pd~~t~~~-Li~~y~k~g~~~~A~~lf~~m~~~gi~pd-~~ty~~LI~~~~~~g~~~eAl~l~~~m~~ 696 (1076)
+.|.+..+. .|+.+...+ +-......|++++|...+.+..+. .|. .+.|+.|...+-..|+..+|+..|++...
T Consensus 171 ~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk 246 (966)
T KOG4626|consen 171 QCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK 246 (966)
T ss_pred HHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc
Confidence 999998865 576665543 333444579999999998887763 343 47899999999999999999999999975
Q ss_pred cCCCCCh-hhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC---hHH
Q 038364 697 EDIKPNS-TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRKSANKT---LAS 771 (1076)
Q Consensus 697 ~gi~pd~-~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d---~~s 771 (1076)
+.|+- ..|..|-..+...+.++.|...+..+.. ..|+ ..++..|...|-..|.+|-|+..+++..+.+ ...
T Consensus 247 --ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A 322 (966)
T KOG4626|consen 247 --LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA 322 (966)
T ss_pred --CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH
Confidence 56663 5788888888888999999988888776 4554 5667778889999999999999999887533 469
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL 849 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~ 849 (1076)
||.|..++...|+..+|+..|.+.+. +.|+. ...+.|...+...|.+++|..+|.... .+.|. ....+.|...
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASI 397 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHH
Confidence 99999999999999999999999998 67776 478889999999999999999999885 45666 5678899999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 850 LGKAGYLDEAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
|-+.|++++|...+++. .++|... .++.+.+.|...|+++.|...+.+++.++|.-.+++..|+.+|-.+|+..+|..
T Consensus 398 ~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 99999999999999986 6888755 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 038364 928 LRHSMDEVG 936 (1076)
Q Consensus 928 ~~~~m~~~g 936 (1076)
-++......
T Consensus 478 sY~~aLklk 486 (966)
T KOG4626|consen 478 SYRTALKLK 486 (966)
T ss_pred HHHHHHccC
Confidence 999886544
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=2.1e-16 Score=184.75 Aligned_cols=293 Identities=16% Similarity=0.143 Sum_probs=203.6
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhCCCh
Q 038364 371 KLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESN---LSVCNCLISMYSRNNKL 447 (1076)
Q Consensus 371 ~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~n~Li~~y~k~g~~ 447 (1076)
+...|++++|++.|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..|...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445566666666666666542 22333555555555666666666666665555432111 24566777777788888
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHH
Q 038364 448 ELATRVFDSMKD---HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI----ITWNCLLSGHFTHGSYQNVLTLL 520 (1076)
Q Consensus 448 ~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~----~ty~~Li~~~~~~g~~~~Al~l~ 520 (1076)
++|..+|+++.+ .+..+++.++..+.+.|++++|.+.|+++.+.+..++. ..|..+...+.+.|++++|.+.|
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888888877754 35567777777888888888888888877766543321 23445555666667777777777
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC-
Q 038364 521 RGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN--RN- 597 (1076)
Q Consensus 521 ~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~--~d- 597 (1076)
+++.+.. |+ +...+..+...|.+.|++++|.+.|+++.. |+
T Consensus 204 ~~al~~~--p~----------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 204 KKALAAD--PQ----------------------------------CVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHhHC--cC----------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 7666543 32 223455566777788888888888887764 32
Q ss_pred -HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHH
Q 038364 598 -IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLIS 676 (1076)
Q Consensus 598 -~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~ 676 (1076)
..+++.++.+|.+.|+.++|.+.++++.+. .|+...+..+...+.+.|++++|.++|+++.+. .|+..+++.++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 345778888888889999999999888876 467667788888999999999999999988765 688888988888
Q ss_pred HHhc---CCChhHHHHHHHHHhhcCCCCChh
Q 038364 677 GSLQ---NENYRESLKFFIQMQQEDIKPNST 704 (1076)
Q Consensus 677 ~~~~---~g~~~eAl~l~~~m~~~gi~pd~~ 704 (1076)
.+.. .|+.++++.++++|.+.+++|++.
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7775 568889999999999887777766
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=7.2e-14 Score=164.57 Aligned_cols=548 Identities=13% Similarity=0.057 Sum_probs=382.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--ccCCcHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhCCChHHHHH
Q 038364 377 WENAIKLFREMQFSSAKAISRTIVKMLQACA--KVGAFHEGKQIHGYVLKSA--LESNLSVCNCLISMYSRNNKLELATR 452 (1076)
Q Consensus 377 ~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~i~~~~~~~g--~~~d~~v~n~Li~~y~k~g~~~~A~~ 452 (1076)
.+.|...|....+.. ++|. ..-+.+||. ..+++..+..+|..++... ..+|+.+... ..+.++|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHH
Confidence 478888888776542 2332 234455554 4468888888888866554 4566655432 56678899999999
Q ss_pred HHHhcCCCChhHHHHHHHHH------HhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 038364 453 VFDSMKDHNLSSWNSMISSY------TGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSL 526 (1076)
Q Consensus 453 lf~~m~~~d~~s~n~lI~~~------~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~ 526 (1076)
.|.+..+-|...-++++.-. -....+..++.++.+.-..... |++..+.|.+.|.-.|+++.+..+...+...
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99888766655545444321 1123355677777666655554 7888888999999999999999998888765
Q ss_pred CCC--CCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-CHhHH
Q 038364 527 GFR--PNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN--R-NIVAW 601 (1076)
Q Consensus 527 gi~--pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~--~-d~~~~ 601 (1076)
... .-...|--+-+++-..|+++.|...+-...+.....-+..+-.|..||.+.|+++.|...|+.+.. | +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 112346667788888999999999988877765443344456788999999999999999998865 3 44566
Q ss_pred HHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhH----hcCCCCchHHHHH
Q 038364 602 NSLISGYCFKG----LFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMK----NSGIYPNVVTWTS 673 (1076)
Q Consensus 602 n~lI~~~~~~g----~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~----~~gi~pd~~ty~~ 673 (1076)
..+-..|+..+ ..++|..++.+..+.- ..|...|..+..+|-.. +...++..|.... ..+-.+-.+..|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 66666777665 4566666666665443 23555666666665544 3333366665433 4555577888999
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhc---CCCCCh-----hhHHHHHHHH-hcCCCchhHHHHHHHHHHcCCCCC-hhhHHH
Q 038364 674 LISGSLQNENYRESLKFFIQMQQE---DIKPNS-----TTMSSLLQTC-GGLGLLQNGKEIHCLCLKNGFIKD-AYVATG 743 (1076)
Q Consensus 674 LI~~~~~~g~~~eAl~l~~~m~~~---gi~pd~-----~t~~~lL~a~-~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~ 743 (1076)
+...+...|++++|.+.|.+.... ...+|. +|..--+..| -..++.+.|.+.+..+++. .|. +..|--
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHH
Confidence 999999999999999999988754 233343 2333333333 4567899999999999884 232 223333
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh---
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLET-GFQPDAITFTALLAACKN--- 816 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~-g~~Pd~~t~~~ll~a~~~--- 816 (1076)
|.-|--..+...+|...++...+ .++..|.-+...+.+..++..|-+-|+..... -..+|..+..+|-+.|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 33333334677788888887653 57788888888899988888888877666542 234777777777775543
Q ss_pred ---------cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHc
Q 038364 817 ---------SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIH 885 (1076)
Q Consensus 817 ---------~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~ 885 (1076)
.+..+.|.++|.+..+. -+-+...-|-+.-.++..|++.+|..+|.+.. ......+|-.+...|...
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH
Confidence 34466788888777642 23346667778889999999999999998873 223456899999999999
Q ss_pred CCchHHHHHHHHHhcC--CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 886 GHLEYAEIASRRLFKL--EPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 886 g~~e~A~~~~~~l~~l--~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|++-.|+++|+..+.. ..++++...+|+.++.+.|+|.+|.+.....+..-
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999998764 34567788999999999999999999888775543
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=8e-15 Score=181.21 Aligned_cols=425 Identities=13% Similarity=0.059 Sum_probs=246.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc-ccHHHHHHHH
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNG-SSVSVVLQAV 542 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~-~t~~~ll~a~ 542 (1076)
.+...-..|.+.|++++|++.|++.... .|+...|..+..+|.+.|++++|++.+++..+.. |+. ..+..+-.++
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 4556667788888999999999887754 4677788888888888888888888888887754 543 3455555666
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 038364 543 TELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLN 622 (1076)
Q Consensus 543 ~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~ 622 (1076)
...|++++|..-+..+.......+..... ++.-+.+....+.+...++.-+ .+..+|..+-. |......+.+..-+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQ-AVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHH-HHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 66677766666555444332211111111 1111111111222222222211 11222222111 111111111111111
Q ss_pred HHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcC-CCC
Q 038364 623 QMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQED-IKP 701 (1076)
Q Consensus 623 ~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~g-i~p 701 (1076)
+-. .-+...-..++..+.. ..-....+++++|++.|++..+.+ ..|
T Consensus 282 ~~~----~~~~~~~~~~~~l~~~-----------------------------~~e~~~~~~y~~A~~~~~~al~~~~~~~ 328 (615)
T TIGR00990 282 DSN----ELDEETGNGQLQLGLK-----------------------------SPESKADESYEEAARAFEKALDLGKLGE 328 (615)
T ss_pred ccc----ccccccccchHHHHHH-----------------------------HHHhhhhhhHHHHHHHHHHHHhcCCCCh
Confidence 000 0000000000000000 000012244555555555555432 122
Q ss_pred C-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHH
Q 038364 702 N-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMI 776 (1076)
Q Consensus 702 d-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li 776 (1076)
+ ...+..+...+...|++++|...+..+++. .|+ ...|..+...|...|++++|...|++..+ .+...|..+.
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2 233444444444555666666665555552 333 34556666777777777777777776543 3456777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcC
Q 038364 777 MGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAG 854 (1076)
Q Consensus 777 ~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G 854 (1076)
..+...|++++|+..|++..+ +.|+. ..+..+...+...|++++|...|++..+. .|+ ...|+.+..+|...|
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcc
Confidence 778888888888888888777 45554 45555666677888888888888887653 343 567778888888888
Q ss_pred CHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHH
Q 038364 855 YLDEAWDFIRTM-PFKPDA-------T-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 855 ~l~eA~~l~~~m-~~~pd~-------~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA 925 (1076)
++++|.+.|++. ...|+. . .++..+..+...|++++|+..++++++++|++...+..|+.+|.+.|++++|
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 888888888774 333321 1 1122222334468999999999999999999888899999999999999999
Q ss_pred HHHHHHHHhC
Q 038364 926 ERLRHSMDEV 935 (1076)
Q Consensus 926 ~~~~~~m~~~ 935 (1076)
.+.+++..+.
T Consensus 562 i~~~e~A~~l 571 (615)
T TIGR00990 562 LKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHH
Confidence 9999887543
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=1.9e-12 Score=152.79 Aligned_cols=551 Identities=12% Similarity=0.068 Sum_probs=285.6
Q ss_pred hCCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC---h
Q 038364 373 RNEKWENAIKLFREMQFS--SAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNK---L 447 (1076)
Q Consensus 373 ~~g~~~eAl~lf~~M~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~---~ 447 (1076)
..|++..|+.+|...... ...||+.. .+-..+.+.++.+.|+.-+..+++..+ .++..+-.|-.+-....+ +
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHH
Confidence 345666666666664432 23344322 122333455666666666665555432 112222221111111222 2
Q ss_pred HHHHHHHHhc---CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhhHHHHHHH
Q 038364 448 ELATRVFDSM---KDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQP--DIITWNCLLSGHFTHGSYQNVLTLLRG 522 (1076)
Q Consensus 448 ~~A~~lf~~m---~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~p--d~~ty~~Li~~~~~~g~~~~Al~l~~~ 522 (1076)
..+..++.+. ...|.+..|.|-+-|.-.|+++.++.+...+......- -..+|-.+..+|-..|++++|...|.+
T Consensus 253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 2333333322 23455666666666666666666666666665432110 123455566666666666666666665
Q ss_pred HHhcCCCCCcccHH--HHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCC----CHHHHHHHHhhcCCC
Q 038364 523 MQSLGFRPNGSSVS--VVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKND----CLQNAQEVFDNMKNR 596 (1076)
Q Consensus 523 m~~~gi~pd~~t~~--~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g----~~~~A~~lf~~m~~~ 596 (1076)
..+.. ||.+++. -+...+...|+++.+...|+.+.+.... +..+...|...|...+ ..+.|..+..+...+
T Consensus 333 s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 333 SLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 55443 4443332 3444556666666666666666654322 3334444444454443 345555555544432
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhc---CCCC
Q 038364 597 ---NIVAWNSLISGYCFKGLFVNAKKMLNQM----EEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNS---GIYP 666 (1076)
Q Consensus 597 ---d~~~~n~lI~~~~~~g~~~~A~~lf~~M----~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~---gi~p 666 (1076)
|...|-.+-..|-+..-+ .++..|... ...+..+.....|.+...+...|++++|...|.+.... ...+
T Consensus 410 ~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 344444444444333322 224444332 23344455566666666666677777777766665543 1122
Q ss_pred ch------HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh-HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChh
Q 038364 667 NV------VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT-MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAY 739 (1076)
Q Consensus 667 d~------~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t-~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~ 739 (1076)
|. .+--.+...+-..++.+.|.+.|...... .|+.+. |..++......+...++...+..+... ...++.
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~ 565 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPN 565 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcH
Confidence 22 11122344445556666666777666652 444332 222322222334555666666555552 234455
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCC
Q 038364 740 VATGLIDMYSKSGNLKSAREVFRKSAN-----KTLASWNCMIMGFAI------------YGNGKEAILLFHELLETGFQP 802 (1076)
Q Consensus 740 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~------------~g~~~~Al~l~~~M~~~g~~P 802 (1076)
+++.+.+.|.+...|.-|.+-|..+.. .|..+.-+|.+.|.+ .+..++|+++|.+.+.. .|
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dp 643 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DP 643 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Cc
Confidence 555566666666666666664443332 233333333333322 23445666666666652 33
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHH
Q 038364 803 -DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPDATIWGA 877 (1076)
Q Consensus 803 -d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd~~~~~~ 877 (1076)
|...-+.+.-.+++.|++++|..+|.+..+. ......+|-.+...|..+|++-.|.++|+.. .-+-+..+...
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3344455555566677777777777776653 2233455666666777777777777776654 12335556666
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH-------------------HHHHcCChHHHHHHHHHHHhCCC
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN-------------------LLAMSNRWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~-------------------~y~~~G~~~eA~~~~~~m~~~g~ 937 (1076)
|..++...|.+.+|.+.+..++.+.|.++..-..++- +....+..++|.++|..|...+-
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6677777777777777777777777766554333332 23444567889999999977653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.71 E-value=9.4e-14 Score=174.98 Aligned_cols=388 Identities=12% Similarity=0.008 Sum_probs=254.2
Q ss_pred HHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChH
Q 038364 539 LQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFV 615 (1076)
Q Consensus 539 l~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~ 615 (1076)
+....-.|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... .+...+..+...+...|+.+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 333444455555555555444311 22334456666667777777777777776432 34556666677777777777
Q ss_pred HHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCC-chHHHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 616 NAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYP-NVVTWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 616 ~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~p-d~~ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
+|+..+++..+. .|+...+..+...+...|+.++|...++++.+. .| +...+..+...+.+.|..++|++.+++.
T Consensus 101 eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 101 EALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 777777777655 233222666666777777777777777777764 23 3444555666777777777777777665
Q ss_pred hhcCCCCChh------hHHHHHHHHh-----cCCCc---hhHHHHHHHHHHc-CCCCChh--hHHHH---HHHHhhcCCH
Q 038364 695 QQEDIKPNST------TMSSLLQTCG-----GLGLL---QNGKEIHCLCLKN-GFIKDAY--VATGL---IDMYSKSGNL 754 (1076)
Q Consensus 695 ~~~gi~pd~~------t~~~lL~a~~-----~~g~~---~~a~~i~~~~~~~-g~~~d~~--~~~~L---i~~y~k~G~~ 754 (1076)
.. .|+.. ....++.... ..+.+ ++|.+.++.+++. ...|+.. ...+. +-++...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 43 23210 1111111111 11122 4566666666653 1223221 11111 2234566899
Q ss_pred HHHHHHHHhcCCCC--hHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHH
Q 038364 755 KSAREVFRKSANKT--LASW--NCMIMGFAIYGNGKEAILLFHELLETGFQPD-----AITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 755 ~~A~~vf~~m~~~d--~~s~--n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-----~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
++|++.|+.+.+.+ ...+ -.+...|...|++++|+..|+++.+. .|. ......+..++...|++++|.+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999887542 1111 22567888999999999999998763 332 2345556667888999999999
Q ss_pred HHHHhhhcCC----------CCCC---cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchH
Q 038364 826 YFDSMSTDYN----------IIPT---IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 826 ~~~~m~~~~g----------~~p~---~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~ 890 (1076)
+++.+.+... -.|+ ...+..+..++...|++++|++.++++ . .+.+...|..+...+...|+.++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 9998875411 1122 123456778899999999999999987 2 33456688899999999999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|+..++++++++|++...+..++..+.+.|+|++|+++++++.+..
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999987654
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=4e-13 Score=166.18 Aligned_cols=444 Identities=11% Similarity=0.009 Sum_probs=260.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038364 433 VCNCLISMYSRNNKLELATRVFDSMK--DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH 510 (1076)
Q Consensus 433 v~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~ 510 (1076)
.+..+...|.+.|++++|...|++.. .|+...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 45667788999999999999999873 467788999999999999999999999999887654 677899999999999
Q ss_pred CChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 038364 511 GSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVF 590 (1076)
Q Consensus 511 g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf 590 (1076)
|++++|+.-|......+- .+......++..... ..+........+... .+...+..+ ..|......+.+..-+
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFV-GNYLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHH-HHHHHHccCCcchhhh
Confidence 999999999887765431 111111122221111 122222222333222 122222222 2232222222221112
Q ss_pred hhcCCCCHh---HHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcC
Q 038364 591 DNMKNRNIV---AWNSLISG---YCFKGLFVNAKKMLNQMEEEE-IKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSG 663 (1076)
Q Consensus 591 ~~m~~~d~~---~~n~lI~~---~~~~g~~~~A~~lf~~M~~~g-~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~g 663 (1076)
+...+-+.. .+..+... ....+++++|++.|++..+.+ ..|+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~------------------------------- 329 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK------------------------------- 329 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh-------------------------------
Confidence 211111110 11111100 012245555555555555432 1111
Q ss_pred CCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHH
Q 038364 664 IYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 664 i~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
+...|+.+...+...|++++|+..|++..+ ..|+ ...|..+...+...|++++|...+..+++. ...+..++.
T Consensus 330 ---~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~~~~ 403 (615)
T TIGR00990 330 ---EAIALNLRGTFKCLKGKHLEALADLSKSIE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPDIYY 403 (615)
T ss_pred ---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 223344444444444444444444444443 2232 224444444444555555555555555442 122345666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSG 818 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g 818 (1076)
.+...|...|++++|.+.|++..+ .+...|..+...+.+.|+.++|+..|++..+ ..|+ ...+..+...+...|
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcc
Confidence 677777777777777777776553 2445666777778888888888888888776 3454 356666777778888
Q ss_pred CHHHHHHHHHHhhhcCCCCCCc--cc------HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCc
Q 038364 819 LVEEGWKYFDSMSTDYNIIPTI--EH------YSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA-TIWGALLGSCRIHGHL 888 (1076)
Q Consensus 819 ~~~eA~~~~~~m~~~~g~~p~~--~~------y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~-~~~~~Ll~a~~~~g~~ 888 (1076)
++++|.+.|+...+. .|+. .. ++.....+...|++++|.+++++. ...|+. ..|..+...+...|++
T Consensus 482 ~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCH
Confidence 888888888876542 3321 11 111222344468999999998885 455554 4688888999999999
Q ss_pred hHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 889 EYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++|...++++.++.+...+. .....|.+|.++....++
T Consensus 559 ~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 559 DEALKLFERAAELARTEGEL--------VQAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 99999999999887764332 233345666666555543
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=1.5e-13 Score=173.26 Aligned_cols=396 Identities=12% Similarity=0.034 Sum_probs=236.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhcCc
Q 038364 469 ISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNG-SSVSVVLQAVTELRL 547 (1076)
Q Consensus 469 I~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~-~t~~~ll~a~~~~g~ 547 (1076)
+......|+.++|++++.+..... ..+...+..+...+.+.|++++|.++|++..+.. |+. .....+...+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 344556777777777777776522 2244457777777777777777777777766543 432 223333334444555
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038364 548 LKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEE 627 (1076)
Q Consensus 548 ~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~ 627 (1076)
.++|...++.+++.... +.. +..+...|...|+.++|...+ +++.+.
T Consensus 99 ~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l-------------------------------~~al~~ 145 (765)
T PRK10049 99 YDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAM-------------------------------TQALPR 145 (765)
T ss_pred HHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHH-------------------------------HHHHHh
Confidence 55555555555444221 222 444444444455555555554 444433
Q ss_pred CCCCCc-cchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCch------HHHHHHHHHH-----hcCCCh---hHHHHHHH
Q 038364 628 EIKPDL-VSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV------VTWTSLISGS-----LQNENY---RESLKFFI 692 (1076)
Q Consensus 628 g~~pd~-~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~------~ty~~LI~~~-----~~~g~~---~eAl~l~~ 692 (1076)
.|+. ..+..+...+...|..++|.+.++.... .|+. .....++... ...+++ ++|++.++
T Consensus 146 --~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 146 --APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred --CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 2222 2223333444444444444444443332 1110 0011111111 122233 56777777
Q ss_pred HHhhc-CCCCChh-hHH----HHHHHHhcCCCchhHHHHHHHHHHcCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHhcC
Q 038364 693 QMQQE-DIKPNST-TMS----SLLQTCGGLGLLQNGKEIHCLCLKNGFI-KDAYVATGLIDMYSKSGNLKSAREVFRKSA 765 (1076)
Q Consensus 693 ~m~~~-gi~pd~~-t~~----~lL~a~~~~g~~~~a~~i~~~~~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 765 (1076)
.+.+. ...|+.. .+. ..+.++...++.++|...++.+.+.+-. |+. ....+...|...|++++|...|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 77643 2223221 111 1133445567778888888777775422 221 22235677888888888888888765
Q ss_pred CCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHH
Q 038364 766 NKT-------LASWNCMIMGFAIYGNGKEAILLFHELLETG-----------FQPDA---ITFTALLAACKNSGLVEEGW 824 (1076)
Q Consensus 766 ~~d-------~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g-----------~~Pd~---~t~~~ll~a~~~~g~~~eA~ 824 (1076)
+.+ ...+..+..++...|++++|+.+++++.+.. -.|+. ..+..+...+...|+.++|.
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~ 379 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE 379 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 432 1234556667888889999998888888641 12332 23445556788899999999
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 825 KYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 825 ~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
++++++... .+.+...+..+..++...|+.++|++.+++. ...|| ...+..+.......|++++|+.+++++++..
T Consensus 380 ~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 380 MRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999998764 2334678889999999999999999999987 45666 4567777778889999999999999999999
Q ss_pred CCCchh
Q 038364 903 PCNSAN 908 (1076)
Q Consensus 903 P~~~~~ 908 (1076)
|+++.+
T Consensus 458 Pd~~~~ 463 (765)
T PRK10049 458 PQDPGV 463 (765)
T ss_pred CCCHHH
Confidence 998644
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.3e-12 Score=140.66 Aligned_cols=475 Identities=13% Similarity=0.132 Sum_probs=295.9
Q ss_pred cccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHh--ccCChhhH-HHHHHHHHHhCCCCChHHHHH
Q 038364 258 YADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCT--KLMAFWLG-VEVHASLIKRGFDFDVHLKCA 334 (1076)
Q Consensus 258 ~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a-~~~~~~~~~~g~~~d~~~~~~ 334 (1076)
+++=|.|+..- ..|.. +++.-+|++|+..|+..+.-.-..+++.-+ ...+...+ ++.+-.+.+.|-++ ..+|
T Consensus 116 V~~E~nL~kmI-S~~Ev-KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREV-KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW-- 190 (625)
T ss_pred hcchhHHHHHH-hhccc-chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc--
Confidence 44556666544 45666 889999999999998877766556655433 22333222 23333333444221 1122
Q ss_pred HHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHH
Q 038364 335 LMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHE 414 (1076)
Q Consensus 335 Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 414 (1076)
|.|.+.+ -+|+..| +...++..||.|+++--..+.|.+++++-.....+.+..+|+.+|.+.+- ..
T Consensus 191 ------K~G~vAd--L~~E~~P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred ------ccccHHH--HHHhhcC--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hc
Confidence 4455554 5566665 57789999999999999999999999999988889999999999988653 34
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 038364 415 GKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQ 494 (1076)
Q Consensus 415 a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 494 (1076)
++.+...|+...+.||..++|+++...++.|+++.|++. |++++.+|++.|+.
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVe 309 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVE 309 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCC
Confidence 588999999999999999999999999999999988754 67789999999999
Q ss_pred CChhhHHHHHHHHHhcCChhh-HHHHHHHHHh----cCCCC----CcccHHHHHHHHHhcCchHHHHHHHHHHHHcC---
Q 038364 495 PDIITWNCLLSGHFTHGSYQN-VLTLLRGMQS----LGFRP----NGSSVSVVLQAVTELRLLKYGRESHGYILRNG--- 562 (1076)
Q Consensus 495 pd~~ty~~Li~~~~~~g~~~~-Al~l~~~m~~----~gi~p----d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g--- 562 (1076)
|...+|..+|..+++.++..+ |..++.+.+. ..++| |..-|...+..|.+..+.+.|.++++......
T Consensus 310 PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 310 PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK 389 (625)
T ss_pred cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 999999999999999887754 5555555543 33444 34567888999999999999999998765321
Q ss_pred -CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhh
Q 038364 563 -LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVS 641 (1076)
Q Consensus 563 -~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~ 641 (1076)
+.++. ....-|..+....|+....+.-+..++.|.-.-+-|+..+...++.
T Consensus 390 ~ig~~~----------------------------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 390 FIGPDQ----------------------------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred hcChHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 11110 0112233344445555555556666666655555566666666667
Q ss_pred hhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChh---hHHHHHHHHhcCCC
Q 038364 642 GYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNST---TMSSLLQTCGGLGL 718 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~---t~~~lL~a~~~~g~ 718 (1076)
+..-.|.++-..+++..+...|-.-+... -.+++..|......|+.. -+..+..-|+. +
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d 503 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAA--D 503 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--H
Confidence 66666777666666666655432211111 122222333323333322 23333222221 1
Q ss_pred chhH-HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC-C----CChHHHHHHH---HHHHHcCCHHHHH
Q 038364 719 LQNG-KEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA-N----KTLASWNCMI---MGFAIYGNGKEAI 789 (1076)
Q Consensus 719 ~~~a-~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~----~d~~s~n~li---~~~~~~g~~~~Al 789 (1076)
+.++ +..-..+.+ ........+...-.+.+.|+.++|.++|.-.. + +.....|+|+ ..-.+......|+
T Consensus 504 ~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 1111 111222333 23344455666667777888888888777663 2 2223455443 4555667777788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038364 790 LLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKY 826 (1076)
Q Consensus 790 ~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~ 826 (1076)
..++-|...+..--.-.-.-+...|.-...-.++..-
T Consensus 582 ~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~ 618 (625)
T KOG4422|consen 582 EVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSN 618 (625)
T ss_pred HHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhh
Confidence 8887776654332222333444444433333334433
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.68 E-value=2.7e-13 Score=167.36 Aligned_cols=351 Identities=12% Similarity=-0.022 Sum_probs=171.6
Q ss_pred HhCCChHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 038364 442 SRNNKLELATRVFDSMKDH------NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQN 515 (1076)
Q Consensus 442 ~k~g~~~~A~~lf~~m~~~------d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~ 515 (1076)
.|..+++.-.-.|..-+++ +..-.-.++..+.+.|++++|+.+++........ +...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3455666655556555432 1122334566777888888888888888777666 44455555566667888888
Q ss_pred HHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 038364 516 VLTLLRGMQSLGFRPNGS-SVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594 (1076)
Q Consensus 516 Al~l~~~m~~~gi~pd~~-t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~ 594 (1076)
|+..|+++.+.. |+.. .+..+...+...|+++.|...+..+++... .+..++..+...|...|+.++|...++.+.
T Consensus 95 A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 888888877654 5432 233333344445555555555555444321 123344445555555555555555554332
Q ss_pred C--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHH
Q 038364 595 N--R-NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTW 671 (1076)
Q Consensus 595 ~--~-d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty 671 (1076)
. | +...+..+ ..+.+.|++++|...++.+.+....++...+..+...+.+.|+.++|...|++..+.. ..+...+
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 1 1 22222222 2244445555555555544433211222222333344444444455544444444321 1123334
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKS 751 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~ 751 (1076)
..+...|.+.|++++|. ..|...++.+++. .+.+...+..+..+|.+.
T Consensus 250 ~~Lg~~l~~~G~~~eA~-------------------------------~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 250 RSLGLAYYQSGRSREAK-------------------------------LQAAEHWRHALQF-NSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHHHHcCCchhhH-------------------------------HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHC
Confidence 44444444444444300 0134444444442 112334445555555555
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 038364 752 GNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGLVEEGWKYF 827 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA~~~~ 827 (1076)
|++++|...+++..+ .+...+..+...|.+.|++++|+..|+++.+ ..|+... +..+..++...|+.++|.+.|
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555554432 1233444555555555555555555555554 2344332 222233455555666666555
Q ss_pred HHhhh
Q 038364 828 DSMST 832 (1076)
Q Consensus 828 ~~m~~ 832 (1076)
++..+
T Consensus 376 ~~al~ 380 (656)
T PRK15174 376 EHYIQ 380 (656)
T ss_pred HHHHH
Confidence 55543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=8.2e-13 Score=163.46 Aligned_cols=433 Identities=10% Similarity=-0.001 Sum_probs=270.8
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHH---HHHHhcCc
Q 038364 471 SYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVL---QAVTELRL 547 (1076)
Q Consensus 471 ~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll---~a~~~~g~ 547 (1076)
...+.|+++.|++.|++..+....-....+ .++..+...|+.++|+..+++... |+...+..++ ..+...|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCC
Confidence 356889999999999988876544111233 777888888888888888888872 5444433333 34556677
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHh--cCChHHHHHHHHHHH
Q 038364 548 LKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCF--KGLFVNAKKMLNQME 625 (1076)
Q Consensus 548 ~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~--~g~~~~A~~lf~~M~ 625 (1076)
++.|.++++.+++..... ..++..++..|.+.++.++|.+.++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777777777765543 44555667777777777777777777665332222123333333 444444666676666
Q ss_pred HcCCCCC-ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChh
Q 038364 626 EEEIKPD-LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNST 704 (1076)
Q Consensus 626 ~~g~~pd-~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~ 704 (1076)
+.. |+ ...+..+.....+.|-...|.++..+-.+. + +...+..+ . .+.|.+..+- +..|+.
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l-~-------~~~~a~~vr~----a~~~~~- 258 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQL-E-------RDAAAEQVRM----AVLPTR- 258 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHH-H-------HHHHHHHHhh----cccccc-
Confidence 553 33 333455556666666666666555443211 0 01111000 0 0111111111 111100
Q ss_pred hHHHHHHHHhcCCCc---hhHHHHHHHHHHc-CCCCC-hhh-HHH---HHHHHhhcCCHHHHHHHHHhcCCCC--hHHH-
Q 038364 705 TMSSLLQTCGGLGLL---QNGKEIHCLCLKN-GFIKD-AYV-ATG---LIDMYSKSGNLKSAREVFRKSANKT--LASW- 772 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~---~~a~~i~~~~~~~-g~~~d-~~~-~~~---Li~~y~k~G~~~~A~~vf~~m~~~d--~~s~- 772 (1076)
.....+ +.+..-++.+... +-.|. ... ..+ .+-++.+.|+..++++.|+.+.... +..|
T Consensus 259 ---------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 259 ---------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred ---------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 001111 2233333333321 11121 111 222 3445677888999999999888543 3444
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC----------C
Q 038364 773 -NCMIMGFAIYGNGKEAILLFHELLETG-----FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYN----------I 836 (1076)
Q Consensus 773 -n~li~~~~~~g~~~~Al~l~~~M~~~g-----~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g----------~ 836 (1076)
-+..++|...+++++|+.+|++..... ..++......|..|+...+++++|..+++.+.+... -
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 567888999999999999999886532 122233356788889999999999999999876311 0
Q ss_pred CCC---cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHH
Q 038364 837 IPT---IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNL 911 (1076)
Q Consensus 837 ~p~---~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~ 911 (1076)
.|+ ...+..++..+...|++.+|++.++++. -+-|..++..+...++..|+..+|+..++.+..++|++...+..
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 122 2234456777888999999999999882 34467788888999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++..+.+.|+|++|.++.+...+..
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999999999999888776544
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.66 E-value=1.4e-12 Score=151.66 Aligned_cols=638 Identities=11% Similarity=0.067 Sum_probs=346.1
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCC
Q 038364 280 EVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLE 359 (1076)
Q Consensus 280 ~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~ 359 (1076)
.++..|...|+.||++||.+++..||..|+++.|- ++..|.-..+.-...+++.++......++.+.|. + +
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e-p 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E-P 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C-C
Confidence 45667888899999999999999999999998888 8898887777777888899998888888887776 4 6
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHH-HH-------HCCCCCCHHHHHHHHHHHHccC-C------cHHHHHHHHHHHH
Q 038364 360 DDLLWNEIIMVKLRNEKWENAIKLFRE-MQ-------FSSAKAISRTIVKMLQACAKVG-A------FHEGKQIHGYVLK 424 (1076)
Q Consensus 360 d~~s~n~li~~~~~~g~~~eAl~lf~~-M~-------~~g~~p~~~t~~~ll~a~~~~g-~------~~~a~~i~~~~~~ 424 (1076)
-.-+|+.+..+|.+.|+... ++.-++ |. ..|+..-..-|-..+.+|-..- + ..--+.+.+..++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999998765 222222 21 2233222222222222221110 0 0011122333334
Q ss_pred hCCCCCHHHHHHHHHHHHh-----CCChHHHHHHHHhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChh
Q 038364 425 SALESNLSVCNCLISMYSR-----NNKLELATRVFDSMK-DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDII 498 (1076)
Q Consensus 425 ~g~~~d~~v~n~Li~~y~k-----~g~~~~A~~lf~~m~-~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ 498 (1076)
.+....+..++.-...+.+ ...+++-...-.... .++..++.+.+..-..+|+.+.|..++.+|.+.|+..+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 3311111111111111111 112222222222223 4889999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 038364 499 TWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYV 578 (1076)
Q Consensus 499 ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~ 578 (1076)
-|..|+-+ .+....+..+++.|++.|+.|+..|+..-+-.|.+.|....+..... ........++.++.+...
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq----~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ----LAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccc----hhhhhhHHHHHHHhcccH
Confidence 88888777 88999999999999999999999999988888777554333222110 000001111122221110
Q ss_pred hCCCHH--HHHHHHhhcCC-------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC-Cccchhhhhhhhhhc
Q 038364 579 KNDCLQ--NAQEVFDNMKN-------RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEE--EIKP-DLVSWNSLVSGYSIW 646 (1076)
Q Consensus 579 k~g~~~--~A~~lf~~m~~-------~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~--g~~p-d~~t~~~Li~~y~k~ 646 (1076)
....++ .+.-+....++ ....+|...+. ....|.-++..++...|..- .+.+ ++..|..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 001111 01111111111 11122322221 11134444444433333211 0011 111122222211110
Q ss_pred ----------------------C------------ChhHHHHHHHHhHhcCCCCch-----------HHHHHHHHHHhcC
Q 038364 647 ----------------------G------------QSKEALVIIHHMKNSGIYPNV-----------VTWTSLISGSLQN 681 (1076)
Q Consensus 647 ----------------------g------------~~~~A~~lf~~m~~~gi~pd~-----------~ty~~LI~~~~~~ 681 (1076)
. +...+.+-+..+......... ..-+.++-.+++.
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 1 111111111111100000011 1123344444444
Q ss_pred CChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHc--CCCCChhhHHHHHHHHhhcCCHHHHHH
Q 038364 682 ENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN--GFIKDAYVATGLIDMYSKSGNLKSARE 759 (1076)
Q Consensus 682 g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~--g~~~d~~~~~~Li~~y~k~G~~~~A~~ 759 (1076)
-+..+++..-+.....-+ | ..|..++.-|..+..++.|..+.++.... .+..|..-+..+.+...+.+...++.+
T Consensus 473 ~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 444555443333322111 1 45777888888888888888777766543 233566677788888888888888888
Q ss_pred HHHhcCCC----C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------------------CCC
Q 038364 760 VFRKSANK----T--LASWNCMIMGFAIYGNGKEAILLFHELLETGF------------------------------QPD 803 (1076)
Q Consensus 760 vf~~m~~~----d--~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~------------------------------~Pd 803 (1076)
+..++.+. + ..+.--|.++-+..|+.+.-.++++-....|+ +|.
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~ 629 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPY 629 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCC
Confidence 88877642 1 12233345555666666655555554443332 222
Q ss_pred HHHHHHHHHH---------------------HHhcCCHHHHHHHHHHh-----------hhcCCCCC---------Cccc
Q 038364 804 AITFTALLAA---------------------CKNSGLVEEGWKYFDSM-----------STDYNIIP---------TIEH 842 (1076)
Q Consensus 804 ~~t~~~ll~a---------------------~~~~g~~~eA~~~~~~m-----------~~~~g~~p---------~~~~ 842 (1076)
......+.+. |.+.|++.++.++.+-= .....+.| +..+
T Consensus 630 P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~ 709 (1088)
T KOG4318|consen 630 PKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGK 709 (1088)
T ss_pred hHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHH
Confidence 2222222222 22233333333322100 00000111 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCCCCC---chhHHHHHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHG---HLEYAEIASRRLFKLEPCN---SANYNLMMNLL 916 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g---~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~y 916 (1076)
..-|+..|.+.|+++.|..++.++++.|+..+..-|...++++. ++-++...-+++.++.|.. ...|.--+-+.
T Consensus 710 ~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a 789 (1088)
T KOG4318|consen 710 NDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFA 789 (1088)
T ss_pred HHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHH
Confidence 33467789999999999999999998899988888888887664 4555555666666655443 33344444445
Q ss_pred HHcCChHHHHHHHHHHHhCCCc
Q 038364 917 AMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 917 ~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
.+....+-|.+.+.+.++....
T Consensus 790 ~q~~qkkaAkk~f~r~eeq~~v 811 (1088)
T KOG4318|consen 790 TQTEQKKAAKKCFERLEEQLTV 811 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHccCC
Confidence 5555566889999999887543
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.65 E-value=3e-13 Score=167.02 Aligned_cols=325 Identities=11% Similarity=0.004 Sum_probs=227.2
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCCh
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQS 649 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~ 649 (1076)
.+....+.|+.++|..+++.... .+...+..+..+....|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 34456677888888888777653 345556666677777888888888888887653 12344566777778888888
Q ss_pred hHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHH
Q 038364 650 KEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLC 729 (1076)
Q Consensus 650 ~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~ 729 (1076)
++|...|++..+.. +.+...|..+...+.+.|++++|...++++... .|+.......+..+...|++++|...+..+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888887641 224567777888888888888888888877653 233222222233466778888888888877
Q ss_pred HHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCC
Q 038364 730 LKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKE----AILLFHELLETGFQP 802 (1076)
Q Consensus 730 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~----Al~l~~~M~~~g~~P 802 (1076)
++..-.++......+...|.+.|++++|.+.|++..+ .+...+..+...|...|+.++ |+..|++..+ ..|
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNS 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCC
Confidence 6653223344445566777888888888888877653 345677778888888888875 7888888877 456
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHH-HH
Q 038364 803 DA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDATIWG-AL 878 (1076)
Q Consensus 803 d~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~~~~~-~L 878 (1076)
+. ..+..+...+...|++++|...+++..+. .|+ ...+..+...|.+.|++++|.+.++++. ..|+...+. .+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 54 46667777788888888888888887653 344 4456667788888888888888887763 456554433 34
Q ss_pred HHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 879 LGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 879 l~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
..++...|+.++|...++++++.+|++.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 5667788888888888888888888753
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=1.3e-09 Score=123.67 Aligned_cols=610 Identities=12% Similarity=0.074 Sum_probs=450.1
Q ss_pred cCChhhHHHHHHHHHHhCC-CCChHHHHHHHHHHhcCCChHHHHHHHhh---cCCCCChhhHHHHHHHHHhCCChhHHHH
Q 038364 307 LMAFWLGVEVHASLIKRGF-DFDVHLKCALMNFYGKCRDVESANKLFSE---VSDLEDDLLWNEIIMVKLRNEKWENAIK 382 (1076)
Q Consensus 307 ~~~~~~a~~~~~~~~~~g~-~~d~~~~~~Li~~y~k~g~~~~A~~vf~~---m~~~~d~~s~n~li~~~~~~g~~~eAl~ 382 (1076)
.+++..++.++..+.+... .|...+.++-+. -..|.+..|+.+..+ +.. ++.-.|---| +-...+.|..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLE--EvagKl~~Ar~~I~~GCe~cp-rSeDvWLeai----RLhp~d~aK~ 336 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLE--EVAGKLSVARNLIMKGCEECP-RSEDVWLEAI----RLHPPDVAKT 336 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HHhhHHHHHHHHHHHHHhhCC-chHHHHHHHH----hcCChHHHHH
Confidence 3456666666666666553 244444444332 233555555555431 112 2333342221 2233344444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC---
Q 038364 383 LFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD--- 459 (1076)
Q Consensus 383 lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~--- 459 (1076)
+.....+. -|+.+. .-+.|---..+...=..++...++. +..++..|-+.+. ..+.++|+.++.+..+
T Consensus 337 vvA~Avr~--~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp 407 (913)
T KOG0495|consen 337 VVANAVRF--LPTSVR--LWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCP 407 (913)
T ss_pred HHHHHHHh--CCCChh--hhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhcc
Confidence 44433322 233222 1222211111222223344444433 2445666666554 4566778888877643
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHH----HHhcCCCCCcccH
Q 038364 460 HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRG----MQSLGFRPNGSSV 535 (1076)
Q Consensus 460 ~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~----m~~~gi~pd~~t~ 535 (1076)
.++..|. +|++..-++.|..+++..++. +.-|...|.+-...=-.+|+.+...+++++ +...|+..|...|
T Consensus 408 ~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 3344444 566777788999999988875 444888888887777888999988888765 4567888888888
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHh
Q 038364 536 SVVLQAVTELRLLKYGRESHGYILRNGLDYD--LYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCF 610 (1076)
Q Consensus 536 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d--~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~ 610 (1076)
..=..+|-..|..-.+..|...++..|++.. ..+|+.--+.+.+.+.++-|+.+|....+ .+...|...+..--.
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHh
Confidence 8888899999999999999999998887643 45788888889999999999999987765 567889998888888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHH
Q 038364 611 KGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKF 690 (1076)
Q Consensus 611 ~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l 690 (1076)
+|..++-..+|.+....- +-..+-|-....-+-..|++..|..++.+..+.... +...|-.-+.....+..+++|..+
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHH
Confidence 999999999999998763 234455555566677789999999999998886333 678899999999999999999999
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--C-
Q 038364 691 FIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN--K- 767 (1076)
Q Consensus 691 ~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~- 767 (1076)
|.+... ..|+...|..-+..-...++.++|.++++..++. ++.-...|..+...|-+.++++.|++.|....+ |
T Consensus 641 lakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~ 717 (913)
T KOG0495|consen 641 LAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN 717 (913)
T ss_pred HHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC
Confidence 999875 5677777777666667788999999999998885 555567888999999999999999999988765 3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHH
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li 847 (1076)
.+..|-.+...--+.|..-+|..+|++.+..+ .-|...|...+..-.+.|+.++|..+..+..++ ++-+...|.--|
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI 794 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAI 794 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHH
Confidence 45689888888889999999999999998753 335568999999999999999999999888874 445567888899
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 848 DLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
.+..+.++-..+.+.+++.. -|+.+..++...+.....++.|...|+++++++|++..++..+...+.+.|.-++-.+
T Consensus 795 ~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred HhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999888888888765 4556666777778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCcceEEEEEC
Q 038364 928 LRHSMDEVGVKSVLVWSWIQID 949 (1076)
Q Consensus 928 ~~~~m~~~g~~~~~~~swi~~~ 949 (1076)
++++-.... +..|..|+.+.
T Consensus 873 v~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 873 VLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHhccC--CCCCcHHHHHh
Confidence 998875543 23477786543
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.60 E-value=2.2e-11 Score=150.96 Aligned_cols=445 Identities=13% Similarity=0.047 Sum_probs=278.6
Q ss_pred HHhcCCChHHHHHHHhhcCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHH
Q 038364 338 FYGKCRDVESANKLFSEVSDLEDDL---LWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHE 414 (1076)
Q Consensus 338 ~y~k~g~~~~A~~vf~~m~~~~d~~---s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 414 (1076)
...+.|+++.|...|++... .+.. ....++..+...|+.++|+..+++... ........+..+...+...|+++.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~-~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESK-AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHh-hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45677888888888887764 3222 233777778888888888888888761 112222333333456777788888
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHh--CCChHHHHHHHHHHHhCC
Q 038364 415 GKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTG--LGYVDVAWSLFNKMNSSR 492 (1076)
Q Consensus 415 a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~--~g~~~~A~~lf~~M~~~g 492 (1076)
|.+++..+++.... +..++..|+..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 88888888887754 356667888889999999999999999865444322224444444 556656999999999886
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHH
Q 038364 493 IQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTS 572 (1076)
Q Consensus 493 ~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~a 572 (1076)
+. +...+..+...+.+.|-...|+++.++- |+-++-..... .-.......++.+..++..-
T Consensus 200 P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~---------l~~~~~a~~vr~a~~~~~~~--- 260 (822)
T PRK14574 200 PT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ---------LERDAAAEQVRMAVLPTRSE--- 260 (822)
T ss_pred CC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH---------HHHHHHHHHHhhcccccccc---
Confidence 55 7778888889999999999998777663 55443322111 00111122222222111100
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC-----CCH-h----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN-----RNI-V----AWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~-----~d~-~----~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
-. +.--.+.|..-++.+.. |.. . ..--.+-++...|++.++++.|+.|...|.+....+--++.++
T Consensus 261 -~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 261 -TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred -hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 00 00012333333333221 211 1 1223566788899999999999999988866555577889999
Q ss_pred hhhcCChhHHHHHHHHhHhcC-----CCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh-HHHHHHHHhcC
Q 038364 643 YSIWGQSKEALVIIHHMKNSG-----IYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT-MSSLLQTCGGL 716 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~g-----i~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t-~~~lL~a~~~~ 716 (1076)
|...+++++|..+|+++.... ..++......|.-+|...+++++|..+++++.+. .|-.+. |. ..
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~-------~~ 407 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYG-------LP 407 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccC-------CC
Confidence 999999999999999986532 2334444678899999999999999999999763 231000 00 00
Q ss_pred CCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLF 792 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~ 792 (1076)
. ..-.|| ......++..+...|++.+|++.++++.. .|...+..+...+...|++.+|++.+
T Consensus 408 ~--------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 408 G--------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQEL 473 (822)
T ss_pred C--------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 001111 12233345556666777777777766653 25556666667777777777777777
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 793 HELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 793 ~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
+.... +.|+.. +......+....+++++|.++.+...+.
T Consensus 474 k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 474 KAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 55544 355543 4445555566667777777766666543
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.6e-11 Score=130.84 Aligned_cols=358 Identities=13% Similarity=0.108 Sum_probs=200.5
Q ss_pred CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHH
Q 038364 255 SRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCA 334 (1076)
Q Consensus 255 ~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~ 334 (1076)
..+..++..||.|+++.... +.|.++|.+-++..++.+..+|+.+|.+-+ +..++++...|+...+.||.++.|+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~-ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSL-ERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhH-HHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHH
Confidence 34556788899999888888 889999988888888888889988887654 4455888888888888888888888
Q ss_pred HHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHH
Q 038364 335 LMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHE 414 (1076)
Q Consensus 335 Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 414 (1076)
|+...++.|++++|++.|- +++.+|.+-|+.|.-.+|..+|..+++.++...
T Consensus 279 lL~c~akfg~F~~ar~aal----------------------------qil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAAL----------------------------QILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HHHHHHHhcchHHHHHHHH----------------------------HHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 8888888888888776543 334445555555555555555555554444322
Q ss_pred -HHHHHHHHHH----hCCC----CCHHHHHHHHHHHHhCCChHHHHHHHHhcCCC-----------ChhHHHHHHHHHHh
Q 038364 415 -GKQIHGYVLK----SALE----SNLSVCNCLISMYSRNNKLELATRVFDSMKDH-----------NLSSWNSMISSYTG 474 (1076)
Q Consensus 415 -a~~i~~~~~~----~g~~----~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~-----------d~~s~n~lI~~~~~ 474 (1076)
+..+...+.. .-+. .|...+..-++.+.+..+.+.|.++-.-.... ..+-|.-+....++
T Consensus 331 ~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq 410 (625)
T KOG4422|consen 331 VASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQ 410 (625)
T ss_pred hhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 2222222211 1111 12223333344444444444444443322111 11234445556666
Q ss_pred CCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHH
Q 038364 475 LGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRES 554 (1076)
Q Consensus 475 ~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i 554 (1076)
....+.-...|+.|.-.-+-|+..+...++.+...+|.++-.-+++.+|...|-. +.. +..+++
T Consensus 411 ~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght-----~r~-----------~l~eei 474 (625)
T KOG4422|consen 411 MESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT-----FRS-----------DLREEI 474 (625)
T ss_pred HHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh-----hhH-----------HHHHHH
Confidence 6677777777777777766777777777777777777777777777777665522 211 223344
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhCC-CHHHH-HHHHhhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-C
Q 038364 555 HGYILRNGLDYDLYVGTSLMDMYVKND-CLQNA-QEVFDNMKN--RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEE-I 629 (1076)
Q Consensus 555 ~~~~~~~g~~~d~~v~~aLi~~y~k~g-~~~~A-~~lf~~m~~--~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g-~ 629 (1076)
...+.+..+.|+......|-....||- ++-++ +..-.+|.. -.....|.+.-.+.+.|+.++|.++|.-+.+.+ -
T Consensus 475 l~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 475 LMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 444444444444333333333333321 01111 111111221 133445555556666666666666666664433 1
Q ss_pred CCCccchh---hhhhhhhhcCChhHHHHHHHHhHh
Q 038364 630 KPDLVSWN---SLVSGYSIWGQSKEALVIIHHMKN 661 (1076)
Q Consensus 630 ~pd~~t~~---~Li~~y~k~g~~~~A~~lf~~m~~ 661 (1076)
.|-....| .+++.-.+.++...|..+++-|..
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22223333 233333444555555555555543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=1.5e-09 Score=128.10 Aligned_cols=589 Identities=12% Similarity=0.066 Sum_probs=393.8
Q ss_pred HhcCCChHHHHHHHhhcCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHH
Q 038364 339 YGKCRDVESANKLFSEVSD--LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGK 416 (1076)
Q Consensus 339 y~k~g~~~~A~~vf~~m~~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 416 (1076)
+++ |++++|.+++.++.. .++...|-+|-..|-+.|+.++++..+-...-.. +-|..-|..+-.-..+.|++++|.
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 444 999999999998754 1467889999999999999999988765443222 335667888888888999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCCh-h-------HHHHHHHHHHhCCChHHHHHHHHHH
Q 038364 417 QIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNL-S-------SWNSMISSYTGLGYVDVAWSLFNKM 488 (1076)
Q Consensus 417 ~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-~-------s~n~lI~~~~~~g~~~~A~~lf~~M 488 (1076)
-.+..+++.... +....-.-..+|-+.|+...|..-|.++-..+. + +--.++..|...+..+.|++.+...
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999988754 344444457789999999999988887743222 1 1223456677778889999999887
Q ss_pred HhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC----------------------CcccHH----HHHHH
Q 038364 489 NSS-RIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP----------------------NGSSVS----VVLQA 541 (1076)
Q Consensus 489 ~~~-g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p----------------------d~~t~~----~ll~a 541 (1076)
... +-.-+...++.++..|.+...++.|......+.....++ +...|. -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 762 222366788999999999999999999999888722222 222221 12223
Q ss_pred HHhcCchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhcCChH
Q 038364 542 VTELRLLKYGRESHGYILRNG--LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN----RNIVAWNSLISGYCFKGLFV 615 (1076)
Q Consensus 542 ~~~~g~~~~a~~i~~~~~~~g--~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~----~d~~~~n~lI~~~~~~g~~~ 615 (1076)
..+....+....+.....+.. +.-++..+.-+.++|...|++.+|.++|..+.. .+...|--+...|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 345666677777777777776 445677889999999999999999999999876 46789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCc-cchhhhhhhhhhcCChhHHHHHHHHhHh--------cCCCCchHHHHHHHHHHhcCCChhH
Q 038364 616 NAKKMLNQMEEEEIKPDL-VSWNSLVSGYSIWGQSKEALVIIHHMKN--------SGIYPNVVTWTSLISGSLQNENYRE 686 (1076)
Q Consensus 616 ~A~~lf~~M~~~g~~pd~-~t~~~Li~~y~k~g~~~~A~~lf~~m~~--------~gi~pd~~ty~~LI~~~~~~g~~~e 686 (1076)
+|.+.|+..... .|+. ..-..|-+.|-+.|+.++|.+.++.|.. .+..|+...--...+.|.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999865 3443 3345667778899999999999999652 2344555555556677888998887
Q ss_pred HHHHHHHHhhcC----------------------CCCChhhHHHHHHHHhcCCCchhHHHH------HHHHHHcCCCCCh
Q 038364 687 SLKFFIQMQQED----------------------IKPNSTTMSSLLQTCGGLGLLQNGKEI------HCLCLKNGFIKDA 738 (1076)
Q Consensus 687 Al~l~~~m~~~g----------------------i~pd~~t~~~lL~a~~~~g~~~~a~~i------~~~~~~~g~~~d~ 738 (1076)
=+..-.+|+... ..-...+...+..+-.+.++....+.- .....-.|+..+.
T Consensus 545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 666555554321 111112222222232233221111111 1111112333222
Q ss_pred --hhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh-----H----HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC--CCCH
Q 038364 739 --YVATGLIDMYSKSGNLKSAREVFRKSANKTL-----A----SWNCMIMGFAIYGNGKEAILLFHELLET-GF--QPDA 804 (1076)
Q Consensus 739 --~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-----~----s~n~li~~~~~~g~~~~Al~l~~~M~~~-g~--~Pd~ 804 (1076)
..+.-++..+++.++.++|..+...+..... . .-+.++.+....+++.+|.+.++.|... +. .|..
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3456688899999999999999887765322 1 2356778888999999999999999864 11 3333
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH--HHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038364 805 I-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC--MVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGALLG 880 (1076)
Q Consensus 805 ~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~--li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~ 880 (1076)
. .|+..++.....|+-.-=.+++.... ...|+-.++-+ -...+..++.+..|+..+-+. ...||....+-+++
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 2 35545555555544332233332222 22233222222 234456788888888765443 23455333333332
Q ss_pred H-H----------HHcCCchHHHHHHHHHhcCCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 881 S-C----------RIHGHLEYAEIASRRLFKLEPC--NSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 881 a-~----------~~~g~~e~A~~~~~~l~~l~P~--~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
. + .+|-.+-+|..+..+..++.-. ..++.+.++.+|-..|-..=|...+++..+.
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 2 1 2344556677777777766433 5688999999999999999999999998654
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=5.5e-09 Score=123.47 Aligned_cols=626 Identities=12% Similarity=0.087 Sum_probs=298.5
Q ss_pred CCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCC-CChHHHHHHHHHHhcCCChHHHHH
Q 038364 272 GGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFD-FDVHLKCALMNFYGKCRDVESANK 350 (1076)
Q Consensus 272 g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~d~~~~~~Li~~y~k~g~~~~A~~ 350 (1076)
|+. ++|..++.+..+... -+...|..|-..+-..|+.+.+... .++...+. .|...|-.+-+...+.|.++.|+-
T Consensus 153 g~~-eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~--~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDL-EEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNF--WLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCH-HHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHH--HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 566 666666666655432 2334555555555566655544332 22222222 344566666666666666666666
Q ss_pred HHhhcCCCCChhhHHH---HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCCcHHHHHHHHHHH
Q 038364 351 LFSEVSDLEDDLLWNE---IIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVK----MLQACAKVGAFHEGKQIHGYVL 423 (1076)
Q Consensus 351 vf~~m~~~~d~~s~n~---li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~i~~~~~ 423 (1076)
.|.+..+ .+..-|-. =+.-|-+.|+...|++.|.+|.+...+.|-.-+.. +++.+...++-+.|.+.++..+
T Consensus 229 cy~rAI~-~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQ-ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHh-cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6665443 22222222 23345556666666666666655432112122222 2333334444455555544444
Q ss_pred HhC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC----CChhHH----------------------H----HHHHHH
Q 038364 424 KSA-LESNLSVCNCLISMYSRNNKLELATRVFDSMKD----HNLSSW----------------------N----SMISSY 472 (1076)
Q Consensus 424 ~~g-~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~----------------------n----~lI~~~ 472 (1076)
..+ -..+...+|.++.+|.+....+.|......+.. +|..-| + -+.-++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 322 122333455555555555555555554444422 222211 0 011112
Q ss_pred HhCCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHH
Q 038364 473 TGLGYVDVAWSLFNKMNSSR--IQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKY 550 (1076)
Q Consensus 473 ~~~g~~~~A~~lf~~M~~~g--~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~ 550 (1076)
......+....+.....+.. +.-++..|.-+..+|.+.|++++|+++|..+.....--+...|..+-..+-..+..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 22222222222222222222 2223344444455555555555555555555444322233344444444444555555
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 630 (1076)
|.+.++.++..... +..+--+|-..|-+.|+.++|.+.++.|..+|... ....+..
T Consensus 468 A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~-----------------------~e~~a~~ 523 (895)
T KOG2076|consen 468 AIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRN-----------------------AEACAWE 523 (895)
T ss_pred HHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc-----------------------hhhcccc
Confidence 55555544443221 22233334444445555555555555444333100 0000111
Q ss_pred CCccchhhhhhhhhhcCChhHHHHHHHHhHhc----------------------CCCCchHHHHHHHHHHhcCCChhHHH
Q 038364 631 PDLVSWNSLVSGYSIWGQSKEALVIIHHMKNS----------------------GIYPNVVTWTSLISGSLQNENYRESL 688 (1076)
Q Consensus 631 pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~----------------------gi~pd~~ty~~LI~~~~~~g~~~eAl 688 (1076)
|+....--..+.+.+.|+.++=...-..|... +......+--.++.+-.+.++.....
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 11111122223333444433322222222210 01111222222333333333211111
Q ss_pred H------HHHHHhhcCCCCCh--hhHHHHHHHHhcCCCchhHHHHHHHHHHcCC-CCCh----hhHHHHHHHHhhcCCHH
Q 038364 689 K------FFIQMQQEDIKPNS--TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF-IKDA----YVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 689 ~------l~~~m~~~gi~pd~--~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~-~~d~----~~~~~Li~~y~k~G~~~ 755 (1076)
+ .+.--...|+.-+. ..+.-++.+.++.+..++|..+...+.+... ..+. ..-...+.+-...+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 1 11111112222222 2344556677788888888888776665421 1222 23345566666778888
Q ss_pred HHHHHHHhcCCC-----Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHH
Q 038364 756 SAREVFRKSANK-----TL---ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA--CKNSGLVEEGWK 825 (1076)
Q Consensus 756 ~A~~vf~~m~~~-----d~---~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a--~~~~g~~~eA~~ 825 (1076)
.|...++.|... ++ ..||...+...++++-.--..++..... ..|+......++.+ ....+.+.-|.+
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~ 761 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQ 761 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHH
Confidence 888888877754 43 4788777777777765555555555443 23333222222222 334566777777
Q ss_pred HHHHhhhcCCCCCCcccH-HHHHHHHH----------hcCCHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHHcCCchH
Q 038364 826 YFDSMSTDYNIIPTIEHY-SCMVDLLG----------KAGYLDEAWDFIRTMP-F-KP--DATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~~~~y-~~li~~l~----------r~G~l~eA~~l~~~m~-~-~p--d~~~~~~Ll~a~~~~g~~e~ 890 (1076)
++-.... ..|+...+ -||.-++. |.-.+-.+..+.++.. . .+ ...++..+..+|..-|-+..
T Consensus 762 ~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~L 838 (895)
T KOG2076|consen 762 EYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHL 838 (895)
T ss_pred HHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHH
Confidence 6655543 34663333 34443332 2223444555554431 1 12 34577789999999999999
Q ss_pred HHHHHHHHhcCCCCCc------------hhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 891 AEIASRRLFKLEPCNS------------ANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~------------~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
|...+++++++.|.+. .+-..|.-+|-..|+..-|.++.++
T Consensus 839 A~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 839 AVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 9999999999976431 3345678899999999999988765
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=6.4e-08 Score=110.18 Aligned_cols=611 Identities=13% Similarity=0.099 Sum_probs=406.8
Q ss_pred cCChhhHHHHhhhcCC---CCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 038364 240 FGDFTSAAKAFFLYFS---RSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEV 316 (1076)
Q Consensus 240 ~g~~~~A~~~f~~~~~---~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 316 (1076)
.+++..|+.++....+ .++-.|-+-.+.--..|.. ..|..+ ...|+.-...+=-.-|.++ ++...+.|+.+
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl-~~Ar~~----I~~GCe~cprSeDvWLeai-RLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKL-SVARNL----IMKGCEECPRSEDVWLEAI-RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHH-HHHHHH----HHHHHhhCCchHHHHHHHH-hcCChHHHHHH
Confidence 3466778888877643 4455675544444455555 444333 3334322112222233333 34455566677
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHhcC-CChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 038364 317 HASLIKRGFDFDVHLKCALMNFYGKC-RDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAI 395 (1076)
Q Consensus 317 ~~~~~~~g~~~d~~~~~~Li~~y~k~-g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~ 395 (1076)
.+..++.-. .++.+|-.-.+.=... ....--++.++.+|. ++..|-+.+ .-...++|.-++.+..+- -|.
T Consensus 338 vA~Avr~~P-~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~--sv~LWKaAV----elE~~~darilL~rAvec--cp~ 408 (913)
T KOG0495|consen 338 VANAVRFLP-TSVRLWLKAADLESDTKNKKRVLRKALEHIPR--SVRLWKAAV----ELEEPEDARILLERAVEC--CPQ 408 (913)
T ss_pred HHHHHHhCC-CChhhhhhHHhhhhHHHHHHHHHHHHHHhCCc--hHHHHHHHH----hccChHHHHHHHHHHHHh--ccc
Confidence 666665431 1222221111110000 001112233334442 455554333 334445555555554431 111
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 038364 396 SRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGL 475 (1076)
Q Consensus 396 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~ 475 (1076)
. .-|.-|+++...++.|+.++....+. +. .+...|-+--.-=-++
T Consensus 409 s---~dLwlAlarLetYenAkkvLNkaRe~-ip-------------------------------td~~IWitaa~LEE~n 453 (913)
T KOG0495|consen 409 S---MDLWLALARLETYENAKKVLNKAREI-IP-------------------------------TDREIWITAAKLEEAN 453 (913)
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHhh-CC-------------------------------CChhHHHHHHHHHHhc
Confidence 1 12233344444444444444443322 22 2334444433333445
Q ss_pred CChHHHHHHHHH----HHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCchH
Q 038364 476 GYVDVAWSLFNK----MNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPN--GSSVSVVLQAVTELRLLK 549 (1076)
Q Consensus 476 g~~~~A~~lf~~----M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd--~~t~~~ll~a~~~~g~~~ 549 (1076)
|..+...++.++ +...|+..+...|-.=...+-..|..--+..+......-|+.-. ..|+...-..|.+.+.++
T Consensus 454 gn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ 533 (913)
T KOG0495|consen 454 GNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE 533 (913)
T ss_pred CCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH
Confidence 555555544433 34567777777777777777777777777777777777775432 357888888899999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 550 YGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 550 ~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
-++.++..+++. ++.+..+|......--..|..++-..+|++... +..+.|-.....+-..|+...|..++.+..+
T Consensus 534 carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 534 CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 999999998875 345677888877777778999999999988764 5667788888888899999999999999987
Q ss_pred cCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh-hh
Q 038364 627 EEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS-TT 705 (1076)
Q Consensus 627 ~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~-~t 705 (1076)
.... +...|-+-+..-..+.+++.|..+|.+... ..|+...|.--+...--.++.++|++++++.++ .-|+- ..
T Consensus 613 ~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl 687 (913)
T KOG0495|consen 613 ANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKL 687 (913)
T ss_pred hCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHH
Confidence 7532 566788888888999999999999998876 467888888878777788999999999999886 35654 35
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIY 782 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~ 782 (1076)
|..+-..+-+.++++.|+..+..-.+. ....+..|..|.+.--+.|.+-.|+.++++..- +|...|-..|..-.++
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRA 766 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc
Confidence 666666677778888888887665553 334577889999999999999999999998764 3668999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDF 862 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l 862 (1076)
|..+.|..+..+.++. +.-+...|..-|...-+.++--.....++ ..+-|+...-.+..++....+++.|.+.
T Consensus 767 gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred CCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888874 44444566666665555555333333332 2345677777888899999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 863 IRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 863 ~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
|.+. ...|| ..+|.-+..-+.+||.-+.-.+++.+...-+|.+...+...+.
T Consensus 840 f~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 9987 45565 4589999999999999999999999999999988655555443
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=2.2e-10 Score=133.89 Aligned_cols=512 Identities=11% Similarity=0.079 Sum_probs=308.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 038364 382 KLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHN 461 (1076)
Q Consensus 382 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d 461 (1076)
.++..|...|+.||.+||.+++.-||..|+.+.|- ++..|.-..+.-...+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45677889999999999999999999999999888 9999988888888899999999999999988776 678
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH-hcCCCCCcccHHHHHH
Q 038364 462 LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQ-SLGFRPNGSSVSVVLQ 540 (1076)
Q Consensus 462 ~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~-~~gi~pd~~t~~~ll~ 540 (1076)
..+|+.+..+|.+.|+... ++..++ -...++..+..+|.-..-..++..+. ..+.-||..+...
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il--- 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL--- 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH---
Confidence 8899999999999999766 222222 11223444555555555555555433 2234455443322
Q ss_pred HHHhcCchHHHHHHHHHHHHcCCC-CchhHHHHHHHHHH-hCCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhcCChHHH
Q 038364 541 AVTELRLLKYGRESHGYILRNGLD-YDLYVGTSLMDMYV-KNDCLQNAQEVFDNMKN-RNIVAWNSLISGYCFKGLFVNA 617 (1076)
Q Consensus 541 a~~~~g~~~~a~~i~~~~~~~g~~-~d~~v~~aLi~~y~-k~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~~g~~~~A 617 (1076)
-..-.|.++.+.++...+-..... |..+ .++-.. -...+++-...-....+ ++..++.+.+..-..+|+.+.|
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 222334444444444322211110 1111 011111 11223333333333333 8889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 038364 618 KKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE 697 (1076)
Q Consensus 618 ~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~ 697 (1076)
..++.+|.+.|+..+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+-.+..+|....+ +.
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e 292 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EE 292 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------cc
Confidence 9999999999998888877777766 788888888999999999999999998888777776653221 12
Q ss_pred CCCCChhhHHHHHHHHhcCCCchhHHHHH------------HHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC
Q 038364 698 DIKPNSTTMSSLLQTCGGLGLLQNGKEIH------------CLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA 765 (1076)
Q Consensus 698 gi~pd~~t~~~lL~a~~~~g~~~~a~~i~------------~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 765 (1076)
|...+ ..+++-+.+-+-.| ..+.... ....=.|+.....+|...+. ....|+-++..++-..+.
T Consensus 293 ~sq~~-hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~ 368 (1088)
T KOG4318|consen 293 GSQLA-HGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLL 368 (1088)
T ss_pred ccchh-hhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhc
Confidence 22222 22222222111122 1111111 11111233333333322111 122455555555555444
Q ss_pred CC-------ChHHHHHHHHHHHH----------------------cCCHHHHHHHHHHHHHCCCCCCHH-----------
Q 038364 766 NK-------TLASWNCMIMGFAI----------------------YGNGKEAILLFHELLETGFQPDAI----------- 805 (1076)
Q Consensus 766 ~~-------d~~s~n~li~~~~~----------------------~g~~~~Al~l~~~M~~~g~~Pd~~----------- 805 (1076)
.+ ++-.+..++.-|.+ .....+..++.... .||..
T Consensus 369 npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~E 443 (1088)
T KOG4318|consen 369 NPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTE 443 (1088)
T ss_pred CCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHH
Confidence 32 22223222222111 11111111111111 22221
Q ss_pred -----------------HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 038364 806 -----------------TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP- 867 (1076)
Q Consensus 806 -----------------t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~- 867 (1076)
.-+.++..|...-+..++...-+..... -+ ...|..||+.+.+..++++|..+.++..
T Consensus 444 ler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~ 519 (1088)
T KOG4318|consen 444 LERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDT 519 (1088)
T ss_pred HhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcc
Confidence 1233444444444444444333222221 11 2678999999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcC---CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccC
Q 038364 868 ----FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKL---EPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSV 940 (1076)
Q Consensus 868 ----~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l---~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~ 940 (1076)
+.-|..-+..+.+...+++....+..+.+++.+. .|.......-+.|..+..|+-+...++.+-....|+..
T Consensus 520 ~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e- 598 (1088)
T KOG4318|consen 520 RDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE- 598 (1088)
T ss_pred cchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-
Confidence 2334455677888888999998888888887652 34334556667777888899998889988888888766
Q ss_pred cceEE
Q 038364 941 LVWSW 945 (1076)
Q Consensus 941 ~~~sw 945 (1076)
.|.-|
T Consensus 599 tgPl~ 603 (1088)
T KOG4318|consen 599 TGPLW 603 (1088)
T ss_pred cccce
Confidence 45555
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.9e-10 Score=123.05 Aligned_cols=480 Identities=13% Similarity=0.102 Sum_probs=269.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHhcCCCChhH-----HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh----hhHHH
Q 038364 432 SVCNCLISMYSRNNKLELATRVFDSMKDHNLSS-----WNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI----ITWNC 502 (1076)
Q Consensus 432 ~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s-----~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~----~ty~~ 502 (1076)
.+...|..-|.......+|+..++-+.+...++ --.+-..+.+...+.+|+++++..+..-+..+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344445555555555556665555443211110 111223344555566666666655443222121 22333
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhH--------HHHHH
Q 038364 503 LLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYV--------GTSLM 574 (1076)
Q Consensus 503 Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v--------~~aLi 574 (1076)
+--.+.+.|++++|+..|+...+.. ||-.+-..++-.+...|+-+..++.|..++..-..+|..- -..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 3345666777777777777666554 6666555555555566777777777766665432222110 11122
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhH
Q 038364 575 DMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFK---GLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKE 651 (1076)
Q Consensus 575 ~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~---g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~ 651 (1076)
+--.+...+...++--..+.++-+.+-..+|.--..- --.+-.++.++.-+...+..|.. -.-.--|.+.|+++.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE--INKAGELLKNGDIEG 437 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHH
Confidence 2222221111111100011111111111111000000 00011111111111000000000 001124567888888
Q ss_pred HHHHHHHhHhcCCCCchHHHHHHHH-HHhc-CCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHH
Q 038364 652 ALVIIHHMKNSGIYPNVVTWTSLIS-GSLQ-NENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLC 729 (1076)
Q Consensus 652 A~~lf~~m~~~gi~pd~~ty~~LI~-~~~~-~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~ 729 (1076)
|.+++.-+.++.-+.-...-|.|-. -|.+ ..++.+|.++-+...... +-|....+.--......|++++|.+.+...
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 8888777765421111111222211 2223 334566666555543221 112222222222233568888888888888
Q ss_pred HHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H
Q 038364 730 LKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-I 805 (1076)
Q Consensus 730 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~ 805 (1076)
+...-.-....|| +.-.|.+.|++++|.+.|-++. ..+....-.+.+.|-...+..+|++++.+... +.|+. .
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence 7653322233333 3335778899999999997653 45666667788889999999999999988776 55554 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-H
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGALLGSC-R 883 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~-~ 883 (1076)
...-|...|-+.|+-.+|.+.+-.--+ -++-+.++...|...|....-+++|..+|++. .+.|+.+-|..++..| +
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 666677789999999999987654322 34456888888999999999999999999997 5789999999999776 6
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
+.|++..|...++.....-|++......|+.+....|.
T Consensus 672 rsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 78999999999999999999999999999999888775
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=3.9e-10 Score=122.09 Aligned_cols=465 Identities=13% Similarity=0.135 Sum_probs=267.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCcHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHH
Q 038364 368 IMVKLRNEKWENAIKLFREMQFSSAKAISRTIV-KMLQACAKVGAFHEGKQIHGYVLKSALESN----LSVCNCLISMYS 442 (1076)
Q Consensus 368 i~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d----~~v~n~Li~~y~ 442 (1076)
.+-|.-+....||+..|+-..+...-||.-.+- .+-+.+.+.+.+..|...+...+..-...+ ..+.|.+--.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 345556667777777777766665555544321 122334455566666666666655433222 334555555677
Q ss_pred hCCChHHHHHHHHhcC--CCChhH-HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhH--------HHHHHHHHhcC
Q 038364 443 RNNKLELATRVFDSMK--DHNLSS-WNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITW--------NCLLSGHFTHG 511 (1076)
Q Consensus 443 k~g~~~~A~~lf~~m~--~~d~~s-~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty--------~~Li~~~~~~g 511 (1076)
+.|.+++|..-|+... .||..+ +|.+|. +..-|+.++..+.|.+|......||..-| ..|+.--.++.
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~-~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIIC-AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhh-heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 8899999999998864 467664 555444 44568888888999998765444432211 22222222221
Q ss_pred Ch-----------hhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 038364 512 SY-----------QNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKN 580 (1076)
Q Consensus 512 ~~-----------~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~ 580 (1076)
.+ ++++-.--++..--+.||- .. | .+...+....-.-..+..+..+ .-..-|.|.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f---a~--------g-~dwcle~lk~s~~~~la~dlei--~ka~~~lk~ 432 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDF---AA--------G-CDWCLESLKASQHAELAIDLEI--NKAGELLKN 432 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccch---hc--------c-cHHHHHHHHHhhhhhhhhhhhh--hHHHHHHhc
Confidence 11 1111111111111122221 00 0 0111111111100001111111 112357789
Q ss_pred CCHHHHHHHHhhcCCCCHhHHHH----HHH-HHHh-cCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHH
Q 038364 581 DCLQNAQEVFDNMKNRNIVAWNS----LIS-GYCF-KGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 581 g~~~~A~~lf~~m~~~d~~~~n~----lI~-~~~~-~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~ 654 (1076)
|+++.|.+++.-...+|..+-++ |-. -|.+ -.++.+|.+.-+...... +-|....+.--+.-...|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999988888777655433222 222 2222 235666666665554221 1111111112223345788888888
Q ss_pred HHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCC
Q 038364 655 IIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF 734 (1076)
Q Consensus 655 lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~ 734 (1076)
.+.+.....-.-....||. --.+-..|++++|++.|-++..- +.-+...+..+.+.|-...+...|.+++.+.... +
T Consensus 512 ~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 8888765321112222332 22356678888888888877532 2345566777777787778888888877766553 4
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 735 IKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALL 811 (1076)
Q Consensus 735 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll 811 (1076)
..|+.+.+-|.+.|-+.|+-..|.+..-+--. -|+.+..-|..-|....-+++|+..|++..- +.|+.+-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHH
Confidence 45788888888888888888888877644332 3555545566677777888888888888776 788888888777
Q ss_pred HHH-HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCC
Q 038364 812 AAC-KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY 855 (1076)
Q Consensus 812 ~a~-~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~ 855 (1076)
..| .+.|++..|.++++.+.+ .++.+.+...-|+...+..|.
T Consensus 667 asc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 665 568888888888888866 456667777777777766663
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.32 E-value=2.8e-12 Score=142.59 Aligned_cols=253 Identities=19% Similarity=0.158 Sum_probs=104.4
Q ss_pred HHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHH-HHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 038364 675 ISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSS-LLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGN 753 (1076)
Q Consensus 675 I~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~-lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~ 753 (1076)
...+.+.|++++|++++++-......|+...|-. +...+...++.+.|.+.++.+.+.+-. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455556666666666644333221343333333 233344556666666666666654322 34455556665 57777
Q ss_pred HHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038364 754 LKSAREVFRKSAN--KTLASWNCMIMGFAIYGNGKEAILLFHELLETG-FQPDAITFTALLAACKNSGLVEEGWKYFDSM 830 (1076)
Q Consensus 754 ~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m 830 (1076)
.++|.+++...-+ ++...|..++..+...++++++.+++++..... ..++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766533 455667777777888888888888888876532 2345556666666778888888888888888
Q ss_pred hhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch
Q 038364 831 STDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 831 ~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
.+. .|+ ......++.++...|+.+++.++++... .+.|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 753 454 6677788888888888888777776652 2456668899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
....+++++...|+.++|.+++++.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999999876
No 39
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=9.6e-07 Score=104.62 Aligned_cols=237 Identities=15% Similarity=0.137 Sum_probs=161.2
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh----HHHHHHHHhcCCCchhHHHHHHHHHHcC---------
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT----MSSLLQTCGGLGLLQNGKEIHCLCLKNG--------- 733 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t----~~~lL~a~~~~g~~~~a~~i~~~~~~~g--------- 733 (1076)
|+.--+.-+.++..++-..+-++++++..-. |+.++ +-.||-.-+-..+.....++.+.+-...
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai 1059 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAI 1059 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHh
Confidence 5556667789999999999999999998742 32221 2222211111222233333333322210
Q ss_pred --------------CCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 038364 734 --------------FIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETG 799 (1076)
Q Consensus 734 --------------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g 799 (1076)
++.+....+.|++ .-+.+|.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+.
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred hhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 1111111111211 1233333333333332 3457999999999999999999887543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 038364 800 FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALL 879 (1076)
Q Consensus 800 ~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll 879 (1076)
-|...|.-++.++++.|.+++-.+++...+++ .-+|.++ +.||-+|++.+++.|-++++.. |+..-.....
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~g----pN~A~i~~vG 1201 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIAG----PNVANIQQVG 1201 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhcC----CCchhHHHHh
Confidence 35567999999999999999999998776664 5566655 5799999999999999888754 7777788889
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+-|...|.++.|.-++... +.|.-|+..+...|.+..|..--++.
T Consensus 1202 drcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999998887644 56888888888999998888776665
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=6.3e-09 Score=114.90 Aligned_cols=212 Identities=15% Similarity=0.142 Sum_probs=167.3
Q ss_pred cCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 038364 715 GLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILL 791 (1076)
Q Consensus 715 ~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l 791 (1076)
-.|+.-.+.+-++.+++.... +...|.-+..+|....+-++-.+.|+.... .|..+|---...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 346777788888888874322 233377778889999999999999987653 3556666556666667889999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038364 792 FHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK 869 (1076)
Q Consensus 792 ~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~ 869 (1076)
|++.+. +.|+.+ .|.-+..+..+.+.++++...|++.+++ ++-.++.|+-....+...+++++|.+.|+.. .++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 677764 6777777777889999999999999875 4455889999999999999999999999885 445
Q ss_pred CC---------HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 870 PD---------ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 870 pd---------~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
|+ +.+-.+++-. +-.+++..|+.+.+++++++|...-+|..|+.+-...|+.+||.++|++.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 54 2222333322 23489999999999999999999999999999999999999999999986
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=2.8e-10 Score=130.56 Aligned_cols=223 Identities=15% Similarity=0.117 Sum_probs=150.2
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHcC--CCCChhhHHHHHHHHhhcCCHHH-HHHHHHhcCCCChHHHHHHHHHHHH
Q 038364 705 TMSSLLQTCGGLGLLQNGKEIHCLCLKNG--FIKDAYVATGLIDMYSKSGNLKS-AREVFRKSANKTLASWNCMIMGFAI 781 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a~~i~~~~~~~g--~~~d~~~~~~Li~~y~k~G~~~~-A~~vf~~m~~~d~~s~n~li~~~~~ 781 (1076)
....+-.+|...+++++++.+|+.+.+.. ...+..+|...+.-+-+.=.+.. |..+. .+....+.+|.++.++|..
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li-~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI-DTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH-hhCCCCcHHHHHhcchhhh
Confidence 33344445555555555555555554421 00133444443332221111111 12222 2223456789889889988
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHH---HHHHHhcCCHH
Q 038364 782 YGNGKEAILLFHELLETGFQP-DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCM---VDLLGKAGYLD 857 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~l---i~~l~r~G~l~ 857 (1076)
+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+... ..++.||+++ .-.|.|.++++
T Consensus 434 Qkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred hhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhheeccchhh
Confidence 9999999999988887 677 45677666666777778888888887654 4566677654 55688889999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 858 EAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 858 eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.|+-.|++. .+.|. .++...+...+.+.|+.|+|+.++++++-++|.|+-.-+..+.++...++++||.+.++++++.
T Consensus 507 ~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 507 FAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 998888887 56664 4455666677888888999999999999999998888888888888899999999999888653
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.23 E-value=2.8e-09 Score=124.35 Aligned_cols=286 Identities=14% Similarity=0.037 Sum_probs=183.2
Q ss_pred CCCHHHHHHHHhhcCCC--CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchh--hhhhhhhhcCChhHHHH
Q 038364 580 NDCLQNAQEVFDNMKNR--NIV-AWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWN--SLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~~--d~~-~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~--~Li~~y~k~g~~~~A~~ 654 (1076)
.|+++.|++.+....+. +.. .|-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665442 122 2222233336677777777777777654 34443332 22456677777777777
Q ss_pred HHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCC
Q 038364 655 IIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF 734 (1076)
Q Consensus 655 lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~ 734 (1076)
.++++.+.. +-+......+...|.+.|++++|.+++.++.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 777776643 224556666777777777777777777777765433211 111000
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 735 IKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALL 811 (1076)
Q Consensus 735 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll 811 (1076)
...|..++....+..+.+...++++..+. .++..+..+...+...|+.++|.+.+++..+. .||... .++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHH
Confidence 00122223333333445556666666543 46667777888888888888888888888773 444421 123
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchH
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~~~~g~~e~ 890 (1076)
.+....++.+++.+..+...+.+ +-|+..+.++..++.+.|++++|.+.|++. ...|+...+..|...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 33445588888888888887642 234556778888888888999998888886 567888888888888889999999
Q ss_pred HHHHHHHHhcCC
Q 038364 891 AEIASRRLFKLE 902 (1076)
Q Consensus 891 A~~~~~~l~~l~ 902 (1076)
|...+++.+.+.
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 999988887653
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.9e-08 Score=111.92 Aligned_cols=482 Identities=13% Similarity=0.021 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038364 431 LSVCNCLISMYSRNNKLELATRVFDSMK--DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHF 508 (1076)
Q Consensus 431 ~~v~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~ 508 (1076)
..-+..+++-+....++.-|.-+-+++. ..|...---+...+.-.|+++.|..+...-.-. ..|..+.......+.
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence 3344445554444555555555555542 123333233556677777888877776554222 227778888888888
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038364 509 THGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQE 588 (1076)
Q Consensus 509 ~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~ 588 (1076)
+..++++|+.++..-... -+...+-..=. +..-..+.+...+..-.+.++ +----..|....+.++|+.
T Consensus 94 ~lk~~~~al~vl~~~~~~---~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGHVE---TNPFSYYEKDA--ANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHhcccchh---hcchhhcchhh--hceeccCcccccccccchhce------eeeeeehhhhhccHHHHHH
Confidence 888888888888733110 11111110000 000001111100000000000 0000123444556677777
Q ss_pred HHhhcCCCCHhHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CCCCCccchhhhhhhh-hhcCChhHHHHHHHHhHhcCCC
Q 038364 589 VFDNMKNRNIVAWNSLISGYCFKGL-FVNAKKMLNQMEEE-EIKPDLVSWNSLVSGY-SIWGQSKEALVIIHHMKNSGIY 665 (1076)
Q Consensus 589 lf~~m~~~d~~~~n~lI~~~~~~g~-~~~A~~lf~~M~~~-g~~pd~~t~~~Li~~y-~k~g~~~~A~~lf~~m~~~gi~ 665 (1076)
.|.+....|+..+.++..--..+=- .++-.++|+.+.-. -.+-++...-.+.... ++.-+ ++....-..-.-.+..
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~ 241 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNEDESLIGLA 241 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCchhhhhhhh
Confidence 7766655555544443222111100 11112222210000 0000111111111100 00000 0000000000012334
Q ss_pred CchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHH
Q 038364 666 PNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLI 745 (1076)
Q Consensus 666 pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li 745 (1076)
.+.....+-.+-+...+++.+.++++++..+. .++....+..=|.++...|+-.+-..+-..+++. .+..+.+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 45666667777788899999999999998764 3445555555566777788877777776677764 455678888999
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 038364 746 DMYSKSGNLKSAREVFRKSANKT---LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVE 821 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~~m~~~d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~ 821 (1076)
--|--.|+..+|++.|.+...-| ...|-.+...|+-.|..++|+..+...-+ +-|.. -.+.-+---|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHH
Confidence 99999999999999998766444 36899999999999999999998887766 23333 23333444588899999
Q ss_pred HHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCCchHH
Q 038364 822 EGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP--------FKP-DATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 822 eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~--------~~p-d~~~~~~Ll~a~~~~g~~e~A 891 (1076)
.|.++|.+.. ++.|+ +..++-+.-+....+.+.+|..+|+... -.+ -..+|+.|..+|++.+.+++|
T Consensus 398 LAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 398 LAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 9999999885 56665 5677777777888999999999998752 111 345789999999999999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
+..+++.+.+.|.++.+|..++-+|...|+++.|.+.+.+..
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=8.5e-09 Score=120.93 Aligned_cols=254 Identities=13% Similarity=0.036 Sum_probs=120.9
Q ss_pred hhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCc
Q 038364 641 SGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLL 719 (1076)
Q Consensus 641 ~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~ 719 (1076)
.++.+.|+.+.|.+.|.+..+....++....-.....+.+.|++++|.+.++++.+. .| +...+..+...+...|++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEM--APRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhH
Confidence 334444555555555555443211111112222344444555555555555555443 23 223444444455555555
Q ss_pred hhHHHHHHHHHHcCCCCChhh-------HHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHH
Q 038364 720 QNGKEIHCLCLKNGFIKDAYV-------ATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAI 789 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~d~~~-------~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al 789 (1076)
+.+.+.+..+.+.+..+.... +..+++.-......+...+.++..++ ++...+-.+...+...|+.++|+
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 555555555555433221111 11111111122233444455555543 36677777788888888888888
Q ss_pred HHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHh-
Q 038364 790 LLFHELLETGFQPDAITF---TALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRT- 865 (1076)
Q Consensus 790 ~l~~~M~~~g~~Pd~~t~---~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~- 865 (1076)
+++++..+. .||.... ..........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+.
T Consensus 284 ~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 284 EIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 888888773 4555321 1111112234555566665555544322222113334555555555555555555552
Q ss_pred --CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 866 --MPFKPDATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 866 --m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
....||..++..+...+.+.|+.++|.+++++.
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 133455555555555555555555555555544
No 45
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.20 E-value=1.8e-06 Score=100.99 Aligned_cols=455 Identities=16% Similarity=0.071 Sum_probs=289.9
Q ss_pred hCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---hcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHH
Q 038364 474 GLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHF---THGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKY 550 (1076)
Q Consensus 474 ~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~---~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~ 550 (1076)
..+..++++.-+..-...+...+..++..+-.++. ..++.+++ +|-...+.-..|....+.+++.-.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 44566777777777777766667766666555433 34555555 444444444444433333332221
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEE 627 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~ 627 (1076)
-.+.++....+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|.-..|+.++++-...
T Consensus 309 --~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 309 --LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred --HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 1122222333556788888888899999999999999998764 45678999999999999999999999886644
Q ss_pred CCCCCccchhhhhhh-h-hhcCChhHHHHHHHHhHh--cCCC--CchHHHHHHHHHHhc-----------CCChhHHHHH
Q 038364 628 EIKPDLVSWNSLVSG-Y-SIWGQSKEALVIIHHMKN--SGIY--PNVVTWTSLISGSLQ-----------NENYRESLKF 690 (1076)
Q Consensus 628 g~~pd~~t~~~Li~~-y-~k~g~~~~A~~lf~~m~~--~gi~--pd~~ty~~LI~~~~~-----------~g~~~eAl~l 690 (1076)
.-.|+..+--.++.. | -+.|.++++..+-.+..+ .+.. .....|-.+.-+|.. .....++++.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 323544443333322 2 234667777766666554 1111 122233333333322 1234578888
Q ss_pred HHHHhhc-CCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC--
Q 038364 691 FIQMQQE-DIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK-- 767 (1076)
Q Consensus 691 ~~~m~~~-gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-- 767 (1076)
+++..+. +-.|+..-|.++- ++..++++.|.+.....++.+-..+...|..|.-.+...+++.+|..+.+...+.
T Consensus 467 le~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 8888663 3344444444443 4566788899999988888766678888888888888899999999888754321
Q ss_pred -C--------------------hHHHHHHHHHHH-----------------------HcCCHHHHHHHHHHHH-------
Q 038364 768 -T--------------------LASWNCMIMGFA-----------------------IYGNGKEAILLFHELL------- 796 (1076)
Q Consensus 768 -d--------------------~~s~n~li~~~~-----------------------~~g~~~~Al~l~~~M~------- 796 (1076)
| +.+...++...- .+++..+|.+..+++.
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 0 011111111111 0112222222211111
Q ss_pred -HCC---------C--CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHH
Q 038364 797 -ETG---------F--QPDA------ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 797 -~~g---------~--~Pd~------~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~ 857 (1076)
..| + .|+. ..|......+...+..++|...+.+.. ++.|. ...|.-....+...|.++
T Consensus 625 ~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 625 KSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhH
Confidence 111 1 1221 123344455777888888887776664 33443 456777778888999999
Q ss_pred HHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHH--HHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 858 EAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYAEI--ASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 858 eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A~~--~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
||.+.|... -+.||.+ +..++...+...|+-..|.. +...+++++|.+++++..|+.++-+.|+.++|.+.|....
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 999998876 4667655 78888889999999999988 9999999999999999999999999999999999999876
Q ss_pred hCCCccCcceEEE
Q 038364 934 EVGVKSVLVWSWI 946 (1076)
Q Consensus 934 ~~g~~~~~~~swi 946 (1076)
+.. ...|...|.
T Consensus 782 qLe-~S~PV~pFs 793 (799)
T KOG4162|consen 782 QLE-ESNPVLPFS 793 (799)
T ss_pred hhc-cCCCccccc
Confidence 654 334555554
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.18 E-value=8.8e-11 Score=130.57 Aligned_cols=255 Identities=15% Similarity=0.187 Sum_probs=105.7
Q ss_pred hhhhhhhhcCChhHHHHHHHHhHhcC-CCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 038364 638 SLVSGYSIWGQSKEALVIIHHMKNSG-IYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGL 716 (1076)
Q Consensus 638 ~Li~~y~k~g~~~~A~~lf~~m~~~g-i~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~ 716 (1076)
.+...+.+.|++++|++++++..... ...|..-|..+.......++.++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666777788888888775544332 2334455555666666777888888888888764322 34445555555 577
Q ss_pred CCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC-----CCChHHHHHHHHHHHHcCCHHHHHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA-----NKTLASWNCMIMGFAIYGNGKEAILL 791 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~Al~l 791 (1076)
+++++|.++.....+. .+++..+..++..|.+.|+++++.++++... ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888777665553 2456667778888899999999999988744 24667888889999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038364 792 FHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK 869 (1076)
Q Consensus 792 ~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~ 869 (1076)
+++..+ ..|+. .....++..+...|+.+++.++++...+. ...++..+..+..+|...|+.++|..++++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999998 57864 56778888899999999999999888764 2556677889999999999999999999987 233
Q ss_pred C-CHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038364 870 P-DATIWGALLGSCRIHGHLEYAEIASRRLFK 900 (1076)
Q Consensus 870 p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~ 900 (1076)
| |..+...+..++...|+.++|..+.+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 4 677788888999999999999999888765
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=2.4e-06 Score=94.36 Aligned_cols=421 Identities=12% Similarity=0.126 Sum_probs=259.6
Q ss_pred CCChHHHHHHHhhcCC--CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHH
Q 038364 342 CRDVESANKLFSEVSD--LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIH 419 (1076)
Q Consensus 342 ~g~~~~A~~vf~~m~~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~ 419 (1076)
.+++..|+.+|+.... .++...|---+..=.++.....|..++++.... -|-+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRV----------------------- 140 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRV----------------------- 140 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchH-----------------------
Confidence 4567778888876543 256667777777777777777777777765532 1111
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh
Q 038364 420 GYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMK--DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI 497 (1076)
Q Consensus 420 ~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~ 497 (1076)
|. .|-..+.|=-..|++..|+++|++.. +|+...|++.|.-=.+....+.|..++++..-. .|++
T Consensus 141 ----------dq-lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v 207 (677)
T KOG1915|consen 141 ----------DQ-LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKV 207 (677)
T ss_pred ----------HH-HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccH
Confidence 11 12222233333455555555555442 355555555555555555555555555554432 2455
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHH----hcCchHHHHHHHHHHHHcCCCC-chhHHHH
Q 038364 498 ITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVT----ELRLLKYGRESHGYILRNGLDY-DLYVGTS 572 (1076)
Q Consensus 498 ~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~----~~g~~~~a~~i~~~~~~~g~~~-d~~v~~a 572 (1076)
.+|--....=-++|+...|..+|....+.= .|...-..+..+++ +...++.|+-++..++..-... ...++..
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~~--~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~ 285 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEFL--GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKK 285 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 555555555555555555555555444321 22222233334443 3456778888888887764432 2445666
Q ss_pred HHHHHHhCCCHHHHHHH--------HhhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc--cch---
Q 038364 573 LMDMYVKNDCLQNAQEV--------FDNMKNR---NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL--VSW--- 636 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~l--------f~~m~~~---d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~--~t~--- 636 (1076)
+...=-+.|+.....++ ++.+... |-.+|--.+..--..|+.+...++|++.+.. ++|-. .-|
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RY 364 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRY 364 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHH
Confidence 66655566664443333 2222222 4567777788778889999999999998754 33311 111
Q ss_pred -----hhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHH----HhcCCChhHHHHHHHHHhhcCCCCChhhHH
Q 038364 637 -----NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISG----SLQNENYRESLKFFIQMQQEDIKPNSTTMS 707 (1076)
Q Consensus 637 -----~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~----~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~ 707 (1076)
|-.+-.=....+++.+.++|+...+. ++-...||.-+--. -.++.++..|.+++-..+ |.-|-..+|.
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk 441 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFK 441 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHH
Confidence 11111223467888889999888772 33344555544433 346788888888888776 6788888888
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-C----ChHHHHHHHHHHHH
Q 038364 708 SLLQTCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSAN-K----TLASWNCMIMGFAI 781 (1076)
Q Consensus 708 ~lL~a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~----d~~s~n~li~~~~~ 781 (1076)
.-|..=.+.+.++..+.+++..++. .| +..+|.-....=...|+.|.|+.+|+-..+ | -...|.+.|.--..
T Consensus 442 ~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~ 519 (677)
T KOG1915|consen 442 GYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE 519 (677)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh
Confidence 8888888889999999999988884 44 556777777777788999999999986553 3 23678888988899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDAITFTAL 810 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~~t~~~l 810 (1076)
.|..++|..+++++++. .+..-.|.+.
T Consensus 520 ~~E~ekaR~LYerlL~r--t~h~kvWisF 546 (677)
T KOG1915|consen 520 EGEFEKARALYERLLDR--TQHVKVWISF 546 (677)
T ss_pred cchHHHHHHHHHHHHHh--cccchHHHhH
Confidence 99999999999998874 3333344443
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.17 E-value=2e-08 Score=117.15 Aligned_cols=246 Identities=11% Similarity=0.034 Sum_probs=171.5
Q ss_pred hcCCChhHHHHHHHHHhhcCCCCChhhHH--HHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH
Q 038364 679 LQNENYRESLKFFIQMQQEDIKPNSTTMS--SLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKS 756 (1076)
Q Consensus 679 ~~~g~~~eAl~l~~~m~~~gi~pd~~t~~--~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~ 756 (1076)
.+.|++++|.+.+.++.+ ..|+..... .....+...|+.+.|...++.+.+.. +.++.+...+...|.+.|+|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 455556666666655543 334433222 22334455666666666666665532 2345667777888888888888
Q ss_pred HHHHHHhcCCCCh-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038364 757 AREVFRKSANKTL-----------ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 757 A~~vf~~m~~~d~-----------~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
|.+++..+.+... ..|..++.......+.+...++++++.+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888877764322 13344444444555666777777776542 34466677888889999999999999
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 826 YFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
++++..+. .|+... .++......|+.+++.+.+++. ...|+ ...+.++...|...+++++|+..|+++++.+|
T Consensus 285 ~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99888753 444421 1233334569999999999887 34454 55677888999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 904 CNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++ ..|..|+.++.+.|+.++|.+.+++-..
T Consensus 360 ~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 85 6688999999999999999999987643
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.6e-08 Score=107.00 Aligned_cols=357 Identities=13% Similarity=0.096 Sum_probs=251.1
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccch--hhhh
Q 038364 563 LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW--NSLV 640 (1076)
Q Consensus 563 ~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~--~~Li 640 (1076)
..-|.+..-...-.+-+.|..+.|++.|.....+-+..|.+-+...--..+.+.+..+.. |...|...+ --+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHH
Confidence 344544444444456677888888888887766545555554433333333333222221 111121111 1133
Q ss_pred hhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCC-CC-ChhhHHHHHHHHhcCCC
Q 038364 641 SGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDI-KP-NSTTMSSLLQTCGGLGL 718 (1076)
Q Consensus 641 ~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi-~p-d~~t~~~lL~a~~~~g~ 718 (1076)
.+|-...+.+++..-.+...+.|...+...-+....+.-...++++|..+|+++.+... +. |..+|+.+|-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44555557778877777777777666665555555666778889999999999987521 11 56788888755433222
Q ss_pred chhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK---TLASWNCMIMGFAIYGNGKEAILLFHEL 795 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~g~~~~Al~l~~~M 795 (1076)
+.---+....+-+ +. +.+...+.+-|+-.++.+.|...|++..+- -...|+.|..-|....+...|++-+++.
T Consensus 315 Ls~LA~~v~~idK--yR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 LSYLAQNVSNIDK--YR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHhcc--CC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2111111111111 33 445667888999999999999999987753 4478999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCH
Q 038364 796 LETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDA 872 (1076)
Q Consensus 796 ~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~ 872 (1076)
.+.. +.|-..|-+|-.+|.-.++..-|.-+|++.. .+.|+ ...|.+|.+.|.+.++++||++.|++.- ...+.
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 9842 4456799999999999999999999999986 45665 7799999999999999999999999973 23355
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhc-------CCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFK-------LEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~-------l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
..+..|...+...++.++|...+++-++ .+|+-..+-.-|++-+.+.++|++|...-...
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7889999999999999999999999876 44554556667899999999999999876655
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=4.1e-09 Score=121.18 Aligned_cols=196 Identities=11% Similarity=0.006 Sum_probs=146.4
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 038364 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTL---ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALL 811 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~---~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll 811 (1076)
..+.+|-++.+.|.-.++.+.|.+.|++..+-|+ .+|+.+..-+.....+|+|...|+..+. +.|+.. .|-.+.
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLG 496 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhh
Confidence 3467788888888888888888888887765443 5667777777777888888888887765 556553 566677
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCc
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHL 888 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~ 888 (1076)
..|.+.++++.|.-.|+... .+.|. .....++...+-+.|+.|+|++++++. .. +.|+..----...+...+++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 77888888888888888775 45665 445566777788888888888888886 22 23444434445556677888
Q ss_pred hHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 889 EYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++|...+|++.++-|++...|.+++.+|-+.|+.+.|..-+.-|.+..
T Consensus 574 ~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 574 VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 999999999999999998899999999999999998888877775543
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=9.5e-09 Score=109.77 Aligned_cols=197 Identities=14% Similarity=0.106 Sum_probs=164.3
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
....+..+...|.+.|++++|.+.+++..+ .+...|..+...+...|+.++|++.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356677889999999999999999987653 345688889999999999999999999998853 2344567777778
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A 891 (1076)
+...|++++|.+.+++..+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999998764222223456778889999999999999999886 3334 456788888999999999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...++++.+..|.++..+..++.++...|++++|.++.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888899999999999999999999888754
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.12 E-value=2.4e-08 Score=117.16 Aligned_cols=258 Identities=9% Similarity=0.020 Sum_probs=129.5
Q ss_pred HHHhCCChHHHHHHHHhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 038364 440 MYSRNNKLELATRVFDSMK----DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQN 515 (1076)
Q Consensus 440 ~y~k~g~~~~A~~lf~~m~----~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~ 515 (1076)
.+...|+.+.|.+.|.+.. ..++...-+....+.+.|+++.|.+.++++.+..+. +...+..+...+.+.|++++
T Consensus 127 aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 127 AAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHH
Confidence 3444455555555555431 111112222344555566666666666666666544 55566666666666666666
Q ss_pred HHHHHHHHHhcCCCCCcccHHH-HHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 038364 516 VLTLLRGMQSLGFRPNGSSVSV-VLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594 (1076)
Q Consensus 516 Al~l~~~m~~~gi~pd~~t~~~-ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~ 594 (1076)
|.+++..+.+.++.+. ..+.. ...+ +..+++.-......+...+.++..+
T Consensus 206 a~~~l~~l~k~~~~~~-~~~~~l~~~a----------------------------~~~~l~~~~~~~~~~~L~~~~~~~p 256 (409)
T TIGR00540 206 LDDIIDNMAKAGLFDD-EEFADLEQKA----------------------------EIGLLDEAMADEGIDGLLNWWKNQP 256 (409)
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHH----------------------------HHHHHHHHHHhcCHHHHHHHHHHCC
Confidence 6666666666653221 11110 0000 1111111111122333334444444
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchh-hhhhh--hhhcCChhHHHHHHHHhHhcCCCCch
Q 038364 595 N---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWN-SLVSG--YSIWGQSKEALVIIHHMKNSGIYPNV 668 (1076)
Q Consensus 595 ~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~-~Li~~--y~k~g~~~~A~~lf~~m~~~gi~pd~ 668 (1076)
. ++...+..+...+...|+.++|.+++++..+. .||..... .++.. ....++.+.+.+.++...+. .|+.
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~ 332 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDK 332 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCC
Confidence 3 35555666666666666666666666666554 23333210 02222 22235555666666555542 2322
Q ss_pred ---HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 038364 669 ---VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLK 731 (1076)
Q Consensus 669 ---~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~ 731 (1076)
....++...+.+.|++++|.+.|+........||..++..+...+.+.|+.++|.+++.....
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334456666666666666666666432223456666666666666666776666666665443
No 53
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=9.1e-06 Score=93.38 Aligned_cols=461 Identities=16% Similarity=0.121 Sum_probs=231.3
Q ss_pred ccCChhhHHHHhhhcC-CCCc-ccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHH
Q 038364 239 EFGDFTSAAKAFFLYF-SRSY-ADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEV 316 (1076)
Q Consensus 239 ~~g~~~~A~~~f~~~~-~~~~-~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 316 (1076)
.-|+++.|...++... .|+. ..|-.+-..-...|+. .-|... ++..|++..++.+
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl-~iaerc----------------------faai~dvak~r~l 512 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNL-FIAERC----------------------FAAIGDVAKARFL 512 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccc-hHHHHH----------------------HHHHHHHHHHHHH
Confidence 3566777766665542 2333 3465555544455544 333333 3344566667777
Q ss_pred HHHHH-------HhC-CCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 038364 317 HASLI-------KRG-FDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQ 388 (1076)
Q Consensus 317 ~~~~~-------~~g-~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 388 (1076)
|+... ..| -..|-+-..+.+.+..| ++.+|+.+|-+-.. -..-|..|-.-.+|++|+.+-+..
T Consensus 513 hd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn~------te~aigmy~~lhkwde~i~lae~~- 583 (1636)
T KOG3616|consen 513 HDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQNA------TEEAIGMYQELHKWDEAIALAEAK- 583 (1636)
T ss_pred HHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhccc------HHHHHHHHHHHHhHHHHHHHHHhc-
Confidence 66432 222 23344445555555553 57888888866432 124566777777888888776532
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH--hcCCCChhHHH
Q 038364 389 FSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFD--SMKDHNLSSWN 466 (1076)
Q Consensus 389 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~--~m~~~d~~s~n 466 (1076)
|.+.-...-.+-++++...|.-+.|-++-. .|-. .-+-|..|.|.|....|.+.-. +....|.....
T Consensus 584 --~~p~~eklk~sy~q~l~dt~qd~ka~elk~--------sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~ 652 (1636)
T KOG3616|consen 584 --GHPALEKLKRSYLQALMDTGQDEKAAELKE--------SDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILE 652 (1636)
T ss_pred --CChHHHHHHHHHHHHHHhcCchhhhhhhcc--------ccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHH
Confidence 322222233455666666666555544321 1111 2345778888888877765532 11223444444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038364 467 SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELR 546 (1076)
Q Consensus 467 ~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g 546 (1076)
-+-.++.+..-+++|-++|+++. ++++|++.|++= |
T Consensus 653 ~ia~alik~elydkagdlfeki~----------------------d~dkale~fkkg-------d--------------- 688 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIH----------------------DFDKALECFKKG-------D--------------- 688 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhh----------------------CHHHHHHHHHcc-------c---------------
Confidence 45555566566666666666553 233444444321 1
Q ss_pred chHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038364 547 LLKYGRESHGYILRNGLDYDLY-VGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQME 625 (1076)
Q Consensus 547 ~~~~a~~i~~~~~~~g~~~d~~-v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~ 625 (1076)
.+..|.++-... ++..++ .-.+--+-+...|+++.|..-|-+... .-.-|.+-.....+.+|+.+++.++
T Consensus 689 af~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniq 759 (1636)
T KOG3616|consen 689 AFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQ 759 (1636)
T ss_pred HHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhh
Confidence 111111111000 000000 001111222333444444444433211 0112334445567778888888777
Q ss_pred HcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh
Q 038364 626 EEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT 705 (1076)
Q Consensus 626 ~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t 705 (1076)
.... -.--|..+.+-|+..|+++.|.++|-+. ..++--|+.|.++|++++|.++-.+.. |.+.....
T Consensus 760 dqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~ 826 (1636)
T KOG3616|consen 760 DQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISL 826 (1636)
T ss_pred hhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHH
Confidence 5532 2334566777888888888888888654 235566788888888888888776653 33333444
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcCC
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK-TLASWNCMIMGFAIYGN 784 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~s~n~li~~~~~~g~ 784 (1076)
|.+-..-.-.+|.+.+|++++-.+- .|+ .-|.||-+.|..++..++.++--.. =..+-.-+..-|-..|+
T Consensus 827 yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~ 897 (1636)
T KOG3616|consen 827 YIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGD 897 (1636)
T ss_pred HHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccC
Confidence 4444444455566666655542211 122 2455666666666666655443211 01122233344444455
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038364 785 GKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKY 826 (1076)
Q Consensus 785 ~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~ 826 (1076)
...|.+-|-+..+ |.+.++.|-.++.|++|.++
T Consensus 898 lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 898 LKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred hhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 5555444433322 33334444445555555443
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.11 E-value=1.1e-05 Score=92.27 Aligned_cols=458 Identities=13% Similarity=0.173 Sum_probs=224.4
Q ss_pred hHHHHHHHHHHhcCCChHHHHHHHhhcCC----CCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038364 329 VHLKCALMNFYGKCRDVESANKLFSEVSD----LEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQ 404 (1076)
Q Consensus 329 ~~~~~~Li~~y~k~g~~~~A~~vf~~m~~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~ 404 (1076)
+.+|-.-+....+.|++..-++.||+... ......|...|.-.-+.|-++-++.++++..+- ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 35666667777888888888888886332 124456888888777888888888888887642 3333455566
Q ss_pred HHHccCCcHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhCCChH---HHHHHHHhcCCC--C--hhHHHHHHHH
Q 038364 405 ACAKVGAFHEGKQIHGYVLKSA------LESNLSVCNCLISMYSRNNKLE---LATRVFDSMKDH--N--LSSWNSMISS 471 (1076)
Q Consensus 405 a~~~~g~~~~a~~i~~~~~~~g------~~~d~~v~n~Li~~y~k~g~~~---~A~~lf~~m~~~--d--~~s~n~lI~~ 471 (1076)
-++..+++++|.+.+..++... ...+...|.-+-+..++.-+.- ....++..+..+ | ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6677788888887777665321 2345556666666666543321 233344444322 2 2367777777
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH-hcCCCCCcccHHHHHHHHHhcCchHH
Q 038364 472 YTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQ-SLGFRPNGSSVSVVLQAVTELRLLKY 550 (1076)
Q Consensus 472 ~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~-~~gi~pd~~t~~~ll~a~~~~g~~~~ 550 (1076)
|.+.|++++|.++|++-...-. .+.-++.+.++|++-....-+..+= +. +.+..+. ..-+++.
T Consensus 258 YIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChh------------hhhhHHH
Confidence 7777777777777766554311 2333333444443321111111000 00 0000000 0001111
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 630 (1076)
...-++.+...+. ...-.++-+=...++..|..-.. ...|+..+-...+.+..+. +.
T Consensus 322 ~~a~~e~lm~rr~--------------------~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vd 378 (835)
T KOG2047|consen 322 HMARFESLMNRRP--------------------LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VD 378 (835)
T ss_pred HHHHHHHHHhccc--------------------hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cC
Confidence 1222222221110 00001111111134455544333 2345566666666666543 22
Q ss_pred CC------ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCC---CchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 038364 631 PD------LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIY---PNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP 701 (1076)
Q Consensus 631 pd------~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~---pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p 701 (1076)
|- ...|..+.+.|-..|+++.|..+|++..+-... -=...|-.-...=.++.+++.|++++++.....-.|
T Consensus 379 P~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~ 458 (835)
T KOG2047|consen 379 PKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNP 458 (835)
T ss_pred cccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCch
Confidence 22 124567777788888888888888887653211 113455555566667788888888877765322111
Q ss_pred C-----------------hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhc
Q 038364 702 N-----------------STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKS 764 (1076)
Q Consensus 702 d-----------------~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 764 (1076)
. ...|...+..--..|-++..+.+++.+++..+.. +.+.......+-...-++++.+++++.
T Consensus 459 ~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 459 ELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred hhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 1 1122222222233344555555555555433221 111111122222333445555555544
Q ss_pred CC----CCh-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhh
Q 038364 765 AN----KTL-ASWNCMIMGFAI---YGNGKEAILLFHELLETGFQPDAITFTALLAA--CKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 765 ~~----~d~-~s~n~li~~~~~---~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a--~~~~g~~~eA~~~~~~m~ 831 (1076)
.. |++ ..||+.+.-+.+ .-+.+.|..+|++.++ |.+|...-+..|+-| =-.-|....|..++++..
T Consensus 538 I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 538 ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32 222 245544433332 1234555555555555 445544433333322 112355555555555543
No 55
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=5.8e-05 Score=90.09 Aligned_cols=126 Identities=7% Similarity=0.117 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHH-----HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 332 KCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEI-----IMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQAC 406 (1076)
Q Consensus 332 ~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~l-----i~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~ 406 (1076)
+-.+-+.+.|.|-+..|.+.|..+...+-++.-+.+ +.+|.-.-.++++++.++.|...+++.|-.+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344555666777777777777666542222222222 234555556777777777777777776666666555555
Q ss_pred HccCCcHHHHHHHHHHHHh-----------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHhc
Q 038364 407 AKVGAFHEGKQIHGYVLKS-----------ALESNLSVCNCLISMYSRNNKLELATRVFDSM 457 (1076)
Q Consensus 407 ~~~g~~~~a~~i~~~~~~~-----------g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m 457 (1076)
...=..+.-.++|+..... ++.-|+.+.-..|.+-+|.|++.+..++..+-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres 750 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES 750 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence 5444444455555543321 23455566666777777778877777776654
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.09 E-value=1.9e-10 Score=91.19 Aligned_cols=50 Identities=32% Similarity=0.585 Sum_probs=39.4
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 038364 460 HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFT 509 (1076)
Q Consensus 460 ~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~ 509 (1076)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888777777777777764
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.08 E-value=2.3e-10 Score=90.65 Aligned_cols=50 Identities=30% Similarity=0.369 Sum_probs=48.3
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038364 359 EDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAK 408 (1076)
Q Consensus 359 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~ 408 (1076)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999975
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=7.9e-06 Score=90.40 Aligned_cols=498 Identities=11% Similarity=0.086 Sum_probs=296.3
Q ss_pred CHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC--CCh-hHHHHHHHH
Q 038364 395 ISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD--HNL-SSWNSMISS 471 (1076)
Q Consensus 395 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~-~s~n~lI~~ 471 (1076)
+...|..-.+-=-..+++..|+.+++..+... ..+..+|-..+.+=.|+..+..|+.+|++... |-+ ..|--.+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33344433333345677888889998888766 45777888888888889999999999987632 222 245555555
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHH
Q 038364 472 YTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYG 551 (1076)
Q Consensus 472 ~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a 551 (1076)
=-..|++..|.++|.+-.+ ..||..+|++.|+.=.+.+..+.|..++++..-.. |+..+|.--..-=-+.|....+
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHH
Confidence 5567888899999987654 46888999999998888888899988888887654 8877777766666777888888
Q ss_pred HHHHHHHHHc-CC-CCchhHHHHHHHHHHhCCCHHHHHHHHhhc----CCC-CHhHHHHHHHHHHhcCChHH---HHHHH
Q 038364 552 RESHGYILRN-GL-DYDLYVGTSLMDMYVKNDCLQNAQEVFDNM----KNR-NIVAWNSLISGYCFKGLFVN---AKKML 621 (1076)
Q Consensus 552 ~~i~~~~~~~-g~-~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m----~~~-d~~~~n~lI~~~~~~g~~~~---A~~lf 621 (1076)
+++++.+++. |- ..+..++++....=.+|...+.|.-+|.-. +.. ....|......--+-|+-.. ++--=
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 8888777653 21 112334444444444566666666665432 221 12223222222222233221 11111
Q ss_pred HHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 038364 622 NQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP 701 (1076)
Q Consensus 622 ~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p 701 (1076)
+++ -++.+.+. -.-|-.+|--.++.-...|+.+...++|++.+.. ++|
T Consensus 307 Rk~------------------------------qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 307 RKF------------------------------QYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred hhh------------------------------HHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 111 11122211 1224445555555555556666666666665542 334
Q ss_pred Ch-------hhHHHHHHHH---hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHh----hcCCHHHHHHHHHhcC--
Q 038364 702 NS-------TTMSSLLQTC---GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYS----KSGNLKSAREVFRKSA-- 765 (1076)
Q Consensus 702 d~-------~t~~~lL~a~---~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~----k~G~~~~A~~vf~~m~-- 765 (1076)
-. .+|.=+=-+| ....+.+.+++++...++. ++...+++.-+=-||+ ++.++..|++++....
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 21 1111111111 2345667777777777662 2223344444433443 5677777777776554
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHH
Q 038364 766 NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYS 844 (1076)
Q Consensus 766 ~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~ 844 (1076)
.|-..++...|..-.+.++++....++++.++ ..|.. .+|.-....-...|+.|.|+.+|+-......+......|.
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 34555667777777777788888888888877 45544 5666666556667888888888887776533333345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC-----------CchHHHHHHHHHhc----CCC
Q 038364 845 CMVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGALLGSCR-----IHG-----------HLEYAEIASRRLFK----LEP 903 (1076)
Q Consensus 845 ~li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~~-----~~g-----------~~e~A~~~~~~l~~----l~P 903 (1076)
+.|+-=...|.++.|..+++++ .-.+...+|-++..--. +.+ ++..|..+|+++.. .+|
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~ 591 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP 591 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence 7777777888888888888876 33455557777654322 223 55677788877653 334
Q ss_pred CCch--hHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 904 CNSA--NYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 904 ~~~~--~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
.... ..-..-++=...|...+...+-++|
T Consensus 592 KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 592 KEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 2211 1122233334556666666666666
No 59
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.3e-06 Score=96.42 Aligned_cols=323 Identities=11% Similarity=0.091 Sum_probs=230.8
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHH---
Q 038364 596 RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWT--- 672 (1076)
Q Consensus 596 ~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~--- 672 (1076)
.|...+-..-..+-+.|....|+..|.+.... -+..|.+-+....-.-+.+.+..+-..+ |...+|-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l------~~~~h~M~~~ 231 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGL------PSDMHWMKKF 231 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcC------cccchHHHHH
Confidence 45544444555567788999999999887732 2344544444333333344333332222 1112222
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCC--CChhhHHHHHHHHhh
Q 038364 673 SLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI--KDAYVATGLIDMYSK 750 (1076)
Q Consensus 673 ~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~--~d~~~~~~Li~~y~k 750 (1076)
-+..++-...+.+++++-.......|+.-+...-+....+.-...+++.|+.+|+.+.+...- .|..+|+.++-.-..
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 234566666688899988888888777665555544455556778999999999999986211 255666655433322
Q ss_pred cCCHHH-HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 038364 751 SGNLKS-AREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 751 ~G~~~~-A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
+.++.- |..++ .+.+--+.|...+.+-|...++.++|+..|++..+ +.|... .|+.+-.-|....+...|.+-++
T Consensus 312 ~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 222222 22222 22333445666677888889999999999999998 667764 56666666999999999999999
Q ss_pred HhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 829 SMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 829 ~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
...+ +.| |-..|-.+..+|.-.+...=|+-+|++. ..+| |...|.+|...|.+.++.++|++.|++++.....+
T Consensus 389 rAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 8874 445 4568889999999999999999999997 4555 67799999999999999999999999999988888
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 906 SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 906 ~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...|+.|+++|.+.++.++|...+++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999988644
No 60
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.00 E-value=4.9e-05 Score=87.55 Aligned_cols=193 Identities=16% Similarity=0.179 Sum_probs=124.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCh
Q 038364 368 IMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKL 447 (1076)
Q Consensus 368 i~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~ 447 (1076)
|.+-.....|.+|+.+++.++.... -.--|..+..-|+..|+++.|.+++-.. ..++--|+||.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3445567788888888887765432 2223566778899999999999887532 2356779999999999
Q ss_pred HHHHHHHHhcCCC--ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038364 448 ELATRVFDSMKDH--NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQS 525 (1076)
Q Consensus 448 ~~A~~lf~~m~~~--d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~ 525 (1076)
++|.++-++...| .+++|-+-..-+-+.|++.+|.+++-.... || .-|..|-+.|..++.+++..+-..
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 9999998887655 345676666677788888888887754422 22 346677777777777777665432
Q ss_pred cCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 038364 526 LGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDN 592 (1076)
Q Consensus 526 ~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~ 592 (1076)
.-+ ..|-..+-.-+-..|++..|+.-+-..- -+.+-++||-..+.+++|.++-+.
T Consensus 879 d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 879 DHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 111 1233333444555666666655443322 245566666666666666665543
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=4.3e-06 Score=94.82 Aligned_cols=494 Identities=10% Similarity=0.003 Sum_probs=291.2
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHH--hcCCCChhHHHHHHHHHHhCCC
Q 038364 400 VKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFD--SMKDHNLSSWNSMISSYTGLGY 477 (1076)
Q Consensus 400 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~--~m~~~d~~s~n~lI~~~~~~g~ 477 (1076)
..+++-+.....+..|.-+-+.+...+.+|+.. --+..+|.-.|+.+.|..+.. .+.+.|..+.......+.+..+
T Consensus 20 ~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~--~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~ 97 (611)
T KOG1173|consen 20 RRLVRDALMQHRYKTALFWADKVAGLTNDPADI--YWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKE 97 (611)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH--HHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 334444444455555666666665555444433 335677777788888877764 4567888888888888889899
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHH
Q 038364 478 VDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGY 557 (1076)
Q Consensus 478 ~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 557 (1076)
+++|+.++.+-... -+...|-.-=. ...-..+.+. ++.... -....+-.--..+....+.++|+.-+.+
T Consensus 98 ~~~al~vl~~~~~~---~~~f~yy~~~~--~~~l~~n~~~----~~~~~~--~essic~lRgk~y~al~n~~~ar~~Y~~ 166 (611)
T KOG1173|consen 98 WDQALLVLGRGHVE---TNPFSYYEKDA--ANTLELNSAG----EDLMIN--LESSICYLRGKVYVALDNREEARDKYKE 166 (611)
T ss_pred HHHHHHHhcccchh---hcchhhcchhh--hceeccCccc----cccccc--chhceeeeeeehhhhhccHHHHHHHHHH
Confidence 99998888733110 01111100000 0000001111 000000 0000000001123344556666666666
Q ss_pred HHHcCCCCchhHHHHHHHHHHhCC-CHHHHHHHHhhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038364 558 ILRNGLDYDLYVGTSLMDMYVKND-CLQNAQEVFDNMKN-----RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKP 631 (1076)
Q Consensus 558 ~~~~g~~~d~~v~~aLi~~y~k~g-~~~~A~~lf~~m~~-----~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~p 631 (1076)
++.. |+.-+.++..+-...= ..++-+.+|+...- .|+...-.+.........-++....-.+-.-.|..-
T Consensus 167 Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~ 242 (611)
T KOG1173|consen 167 ALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAE 242 (611)
T ss_pred HHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhh
Confidence 5544 2223333222211110 11122333332111 111111111111100000000000000000112223
Q ss_pred CccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHH
Q 038364 632 DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQ 711 (1076)
Q Consensus 632 d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~ 711 (1076)
|......-.+-+-..+++.+..++++.+.+. .++....+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333444455666788999999999988774 2455566666778889999999888888888764 3445688999988
Q ss_pred HHhcCCCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CC-hHHHHHHHHHHHHcCCHHH
Q 038364 712 TCGGLGLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRKSAN--KT-LASWNCMIMGFAIYGNGKE 787 (1076)
Q Consensus 712 a~~~~g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d-~~s~n~li~~~~~~g~~~~ 787 (1076)
-|...|+..+|++.+..... ++|. ...|-.+.+.|+-.|.-|.|...+....+ ++ -..+--+..-|.+.+..+-
T Consensus 321 YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88888999999999988766 4432 45788889999999999999887754332 11 1111123345777889999
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCCC----CcccHHHHHHHHHhcCCHHHHHH
Q 038364 788 AILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDY-NIIP----TIEHYSCMVDLLGKAGYLDEAWD 861 (1076)
Q Consensus 788 Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~-g~~p----~~~~y~~li~~l~r~G~l~eA~~ 861 (1076)
|.+.|.+... +-|+.. ..+-+--..-+.+.+.+|..+|+.....- .+.+ ...+++.|..+|.+.+++++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999998886 677664 33333333445788999999998876311 1111 23457888999999999999999
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 862 FIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 862 l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
.+++. ..+.|..++.++.-.+...|+++.|...|.+.+.+.|+|..+-.+|..+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99986 24567889999999999999999999999999999999866655655443
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=6.5e-07 Score=94.77 Aligned_cols=302 Identities=15% Similarity=0.124 Sum_probs=165.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCccch---hhhhhhhhhcCChhHHHHHHHHhHhcCCCCch------HHHHHHHHHHhcCC
Q 038364 612 GLFVNAKKMLNQMEEEEIKPDLVSW---NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV------VTWTSLISGSLQNE 682 (1076)
Q Consensus 612 g~~~~A~~lf~~M~~~g~~pd~~t~---~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~------~ty~~LI~~~~~~g 682 (1076)
.+.++|.++|-+|.+. |..|| -+|-+.|-+.|.+|.|+++-+.+.++ ||. ...-.|..-|...|
T Consensus 49 ~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 49 NQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred cCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhh
Confidence 3444555555555432 22222 34445555555555555555555432 221 11223334455556
Q ss_pred ChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC----hhhHHHHHHHHhhcCCHHHHH
Q 038364 683 NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD----AYVATGLIDMYSKSGNLKSAR 758 (1076)
Q Consensus 683 ~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d----~~~~~~Li~~y~k~G~~~~A~ 758 (1076)
-+|.|.++|..+.+.| .--......|+..|-...++++|.++...+.+.+-.+. ...|.-|...+.-..+.+.|.
T Consensus 122 l~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 122 LLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 6666666666655432 11223445555666666666666666666655443322 123444555566667777777
Q ss_pred HHHHhcCCCChH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 038364 759 EVFRKSANKTLA---SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 759 ~vf~~m~~~d~~---s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g 835 (1076)
..+.+..+.|.. .--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++...+.++.+.
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~-- 278 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET-- 278 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--
Confidence 777766654332 223345667777888888888888777432222235666777788888888888877777653
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 836 IIPTIEHYSCMVDLLGKAGYLDEAWDFI-RTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 836 ~~p~~~~y~~li~~l~r~G~l~eA~~l~-~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
.+....-..+.+.-....-.++|...+ +...-+|+...+..|+..-.. +
T Consensus 279 -~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~--------------------d--------- 328 (389)
T COG2956 279 -NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA--------------------D--------- 328 (389)
T ss_pred -cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc--------------------c---------
Confidence 344444444444444444444444433 334455666555555433111 0
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEE
Q 038364 915 LLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVF 955 (1076)
Q Consensus 915 ~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f 955 (1076)
+..|++.+...+++.|...-++..|.+.-...+-..|.|
T Consensus 329 --aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 329 --AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred --ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 133668888888888887777777755444444445544
No 63
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.8e-05 Score=92.32 Aligned_cols=149 Identities=13% Similarity=0.206 Sum_probs=102.7
Q ss_pred CChHHHHHHHH--HHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCC
Q 038364 327 FDVHLKCALMN--FYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFS-S--------AKAI 395 (1076)
Q Consensus 327 ~d~~~~~~Li~--~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g--------~~p~ 395 (1076)
-|..+..++++ .|..-|++|.|.+-..-+. ..+.|..|.+.+++..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 57778888886 5888999999988887774 4678999999999999988888777766421 1 1222
Q ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCCh-hHHHHHHHHHHh
Q 038364 396 SRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNL-SSWNSMISSYTG 474 (1076)
Q Consensus 396 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~lI~~~~~ 474 (1076)
.+=..+.-.....|-+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-.+-.. .||-....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222222222346788999999998887643 344567778999999988765432211 255555555556
Q ss_pred CCChHHHHHHHHHH
Q 038364 475 LGYVDVAWSLFNKM 488 (1076)
Q Consensus 475 ~g~~~~A~~lf~~M 488 (1076)
.++.+.|++.|++-
T Consensus 871 r~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKA 884 (1416)
T ss_pred hccHHHHHHHHHhc
Confidence 67788888877653
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.92 E-value=0.00034 Score=80.59 Aligned_cols=457 Identities=11% Similarity=0.100 Sum_probs=261.7
Q ss_pred CCCcccHHHHHHH---HHhCCCChHHHHHHHHHHHhCCCC---CCcchHHHHHHHHhccCChhhHHHHHHHHHHhC-CCC
Q 038364 255 SRSYADWSSFLED---YESFGGEVQELLEVWGELHGKGVI---FRSRILTIILKLCTKLMAFWLGVEVHASLIKRG-FDF 327 (1076)
Q Consensus 255 ~~~~~~wn~li~~---~~~~g~~~~~al~lf~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~ 327 (1076)
..+.-.|...|.. ..++..+-+.+.+.++.-.++++. -=...+..-+.-....+++..-+..++.+++.- ..-
T Consensus 57 p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq 136 (835)
T KOG2047|consen 57 PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ 136 (835)
T ss_pred CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh
Confidence 4456678777742 334443324566666665555432 112344445566677788888888888887653 333
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHHHHHH
Q 038364 328 DVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFS------SAKAISRTIVK 401 (1076)
Q Consensus 328 d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~------g~~p~~~t~~~ 401 (1076)
...+|.-.+......|-++-+.+++.+-.. -+..+-+--|.-++..+++++|-+.+...... .-+.+...|.-
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk-~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLK-VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHh-cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 445777788888888899999999998766 56667888899999999999999999887532 12445556666
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHhCCC--CC--HHHHHHHHHHHHhCCChHHHHHHHHhcCC--CChhHHHHHHHHHHhC
Q 038364 402 MLQACAKVGAFHEGKQIHGYVLKSALE--SN--LSVCNCLISMYSRNNKLELATRVFDSMKD--HNLSSWNSMISSYTGL 475 (1076)
Q Consensus 402 ll~a~~~~g~~~~a~~i~~~~~~~g~~--~d--~~v~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~lI~~~~~~ 475 (1076)
+-.-.++..+.-....+ +.+++.|+. +| ...|++|.+-|.+.|.++.|+.+|++-.. -.+..++.+.++|++-
T Consensus 216 lcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHH
Confidence 66666666555444443 334555542 34 46899999999999999999999988643 2445677777888763
Q ss_pred CChHHHHHHHHHHH--hCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC----------CCC-cccHHHHHHHH
Q 038364 476 GYVDVAWSLFNKMN--SSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGF----------RPN-GSSVSVVLQAV 542 (1076)
Q Consensus 476 g~~~~A~~lf~~M~--~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi----------~pd-~~t~~~ll~a~ 542 (1076)
....-+..+ +|- +.+-.-|...+ +-.+.-|+.+.+.+. .|+ ..++..-++
T Consensus 295 EE~~~~~~m--e~a~~~~~n~ed~~dl-------------~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~-- 357 (835)
T KOG2047|consen 295 EESCVAAKM--ELADEESGNEEDDVDL-------------ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK-- 357 (835)
T ss_pred HHHHHHHHH--hhhhhcccChhhhhhH-------------HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--
Confidence 322211111 111 11212122333 333344444443320 021 112222211
Q ss_pred HhcCchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CH----hHHHHHHHHHHh
Q 038364 543 TELRLLKYGRESHGYILRNG-----LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNR---NI----VAWNSLISGYCF 610 (1076)
Q Consensus 543 ~~~g~~~~a~~i~~~~~~~g-----~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~---d~----~~~n~lI~~~~~ 610 (1076)
...|+..+-...+..+++.- ...-...|..+.+.|-..|+++.|+.+|++...- .+ .+|-.-...=.+
T Consensus 358 l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 358 LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 22344555566666666542 1223457888999999999999999999988762 22 345555556667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcc--------------------chhhhhhhhhhcCChhHHHHHHHHhHhcCC-CCchH
Q 038364 611 KGLFVNAKKMLNQMEEEEIKPDLV--------------------SWNSLVSGYSIWGQSKEALVIIHHMKNSGI-YPNVV 669 (1076)
Q Consensus 611 ~g~~~~A~~lf~~M~~~g~~pd~~--------------------t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi-~pd~~ 669 (1076)
+.+++.|+++.+..... |... .|.-.++.--..|-++....+++++.+..+ .|..+
T Consensus 438 h~~~~~Al~lm~~A~~v---P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHV---PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred hhhHHHHHHHHHhhhcC---CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 78888888877765432 2221 122222333334555555566666655322 22211
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh-hhHHHHHHHHh---cCCCchhHHHHHHHHHHcCCCC
Q 038364 670 TWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS-TTMSSLLQTCG---GLGLLQNGKEIHCLCLKNGFIK 736 (1076)
Q Consensus 670 ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~-~t~~~lL~a~~---~~g~~~~a~~i~~~~~~~g~~~ 736 (1076)
.= ...-+-.+.-++++.+.+++-+..=-.|+. ..|+.-|.-+. ....++.++.+|+++++ |..|
T Consensus 515 ~N--yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 515 IN--YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HH--HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 10 111123344556666666554433222332 23443333222 12345666666666666 3443
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.92 E-value=1e-07 Score=111.16 Aligned_cols=229 Identities=18% Similarity=0.158 Sum_probs=161.0
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHc-----CC-CCCh-hhHHHHHHHHhhcCCHHHHHHHHHhcCC-------C-C-
Q 038364 705 TMSSLLQTCGGLGLLQNGKEIHCLCLKN-----GF-IKDA-YVATGLIDMYSKSGNLKSAREVFRKSAN-------K-T- 768 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a~~i~~~~~~~-----g~-~~d~-~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~-d- 768 (1076)
|...+...|...|+++.|.+.+...++. |. .|.. ...+.+..+|...+++++|..+|+++.. + +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555566666666666665555442 21 1222 2233577788888888888888876542 1 1
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCC--CC
Q 038364 769 --LASWNCMIMGFAIYGNGKEAILLFHELLE-----TGFQ-PDAIT-FTALLAACKNSGLVEEGWKYFDSMSTDYN--II 837 (1076)
Q Consensus 769 --~~s~n~li~~~~~~g~~~~Al~l~~~M~~-----~g~~-Pd~~t-~~~ll~a~~~~g~~~eA~~~~~~m~~~~g--~~ 837 (1076)
..+++.|...|.+.|++++|...+++..+ .|.. |+..+ ++.+...|...+.+++|..++....+.+. +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 24677788889999999888777766553 2333 33333 45555569999999999999987765443 22
Q ss_pred CC----cccHHHHHHHHHhcCCHHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcC--
Q 038364 838 PT----IEHYSCMVDLLGKAGYLDEAWDFIRTMP-------F--KPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKL-- 901 (1076)
Q Consensus 838 p~----~~~y~~li~~l~r~G~l~eA~~l~~~m~-------~--~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l-- 901 (1076)
++ ..+|+.|..+|.+.|+++||++++++.- . .+. ...++.|..+|...++++.|.++|++...+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 4579999999999999999999998861 1 222 346777888999999999999999887653
Q ss_pred --CCCC---chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 902 --EPCN---SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 902 --~P~~---~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
.|++ ..+|..|+.+|.+.|++++|.++-+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4544 4568899999999999999999988873
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.92 E-value=1.5e-06 Score=95.05 Aligned_cols=280 Identities=14% Similarity=0.073 Sum_probs=179.7
Q ss_pred cCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 038364 510 HGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589 (1076)
Q Consensus 510 ~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~l 589 (1076)
.|++..|+++..+-.+.+-.| ...|.....+.-..|+.+.+-....++.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 356666666666655554323 1234444455566777777777777777665566666777777777888888888776
Q ss_pred HhhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-------cchhhhhhhhhhcCChhHHHHHHHHh
Q 038364 590 FDNMK---NRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-------VSWNSLVSGYSIWGQSKEALVIIHHM 659 (1076)
Q Consensus 590 f~~m~---~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-------~t~~~Li~~y~k~g~~~~A~~lf~~m 659 (1076)
.++.. .++..........|.+.|++.+...++.+|.+.|.--|. .+|+.+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 65544 467788888888899999999999999998888765443 34566666655555555555555555
Q ss_pred HhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChh
Q 038364 660 KNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAY 739 (1076)
Q Consensus 660 ~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~ 739 (1076)
..+ .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ -..+-.+.+.++.+.-.+..+.-.+. ...++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 432 233455556677777788888888888887777666665 12222444555555555554444332 223345
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhcC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038364 740 VATGLIDMYSKSGNLKSAREVFRKSA--NKTLASWNCMIMGFAIYGNGKEAILLFHELL 796 (1076)
Q Consensus 740 ~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~ 796 (1076)
.+.+|...|.+.+.|.+|.+.|+... .++..+|+-+..++.+.|+.++|.+.+++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 66667777777777777777776544 3455666666666666666666666666554
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=6.5e-07 Score=94.78 Aligned_cols=284 Identities=15% Similarity=0.111 Sum_probs=161.8
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhCCChHH
Q 038364 373 RNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESN---LSVCNCLISMYSRNNKLEL 449 (1076)
Q Consensus 373 ~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~n~Li~~y~k~g~~~~ 449 (1076)
-+.++++|+++|-+|.+.. +-+..+-.++-+-+.+.|..+.|..+|..++++.--+. ....-.|-.-|.+.|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578899999999998742 22333445677888899999999999998887532111 2344456666788888888
Q ss_pred HHHHHHhcCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHH
Q 038364 450 ATRVFDSMKDHNLS---SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI----ITWNCLLSGHFTHGSYQNVLTLLRG 522 (1076)
Q Consensus 450 A~~lf~~m~~~d~~---s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~----~ty~~Li~~~~~~g~~~~Al~l~~~ 522 (1076)
|..+|..+.+.+.. ..--++..|-+..++++|++.-+++...+-++.. .-|--+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88888877654333 4555777788888888888888777776544322 2233444444455666666666666
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCH----
Q 038364 523 MQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI---- 598 (1076)
Q Consensus 523 m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~---- 598 (1076)
..+.+ |+.+--+ -.+.+.+...|+++.|.+.++.+.+.|.
T Consensus 206 Alqa~--~~cvRAs----------------------------------i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 206 ALQAD--KKCVRAS----------------------------------IILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred HHhhC--ccceehh----------------------------------hhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 66554 4333222 2333444445555555555555444332
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGS 678 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~ 678 (1076)
.+...|..+|.+.|+.++.+..+..+.+... +...-..|-..-....-.+.|..++.+-..+ .|+...+..+|+..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 2334444555555555555555555554421 2211122222222222233444433333332 46777777776655
Q ss_pred hc---CCChhHHHHHHHHHhhc
Q 038364 679 LQ---NENYRESLKFFIQMQQE 697 (1076)
Q Consensus 679 ~~---~g~~~eAl~l~~~m~~~ 697 (1076)
.. .|...+.+.+++.|..+
T Consensus 326 l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 326 LADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hccccccchhhhHHHHHHHHHH
Confidence 43 34456666667776654
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.6e-06 Score=96.35 Aligned_cols=212 Identities=12% Similarity=0.112 Sum_probs=106.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHH
Q 038364 612 GLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFF 691 (1076)
Q Consensus 612 g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~ 691 (1076)
|+...|.+-|+..+.....++.. |.-+..+|....+.++.++.|+...+.. +-|..+|-.-...+.-.+++++|..=|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444332111111 4444445555555555555555554421 113334444444444455555555555
Q ss_pred HHHhhcCCCCC-hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CC
Q 038364 692 IQMQQEDIKPN-STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN--KT 768 (1076)
Q Consensus 692 ~~m~~~gi~pd-~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d 768 (1076)
++.+. +.|+ ...|..+--+.-+.+.++..+..|+...+. ++.-+.+|+.....+...++++.|.+.|+...+ +.
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 55543 3332 233433333444555566666666655554 555556666666666666666666666654432 11
Q ss_pred -------hHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 769 -------LASW--NCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 769 -------~~s~--n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
...+ .+++ .+.-.+++.+|++++++..+ +.|-. ..+.+|...-.+.|++++|+++|+...
T Consensus 495 ~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111 1111 11123666667777776666 44544 356666666666677777777776553
No 69
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.89 E-value=2.2e-06 Score=93.63 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
..+.+|..-|.+++.+.+|..+++.+++..|+ ..+|..+++.|.+.|+..+|.+++++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55666666666667777777777766666664 3566677777777777777776666643
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.7e-05 Score=84.67 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=88.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHH-HHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYS-CMVDLL 850 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~-~li~~l 850 (1076)
-.+|.+.+.-..++++.+..++....- +.-|..--..+..|.+..|++.+|.++|-.+... .+ .+..+|. .|...|
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCY 438 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHH
Confidence 345555555566666666666666553 2223333334667888889999999988776431 22 2334454 456788
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 851 GKAGYLDEAWDFIRTMPFKPDATIWGALL-GSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll-~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.++|+.+-|++++-++..+.+..+...++ +-|.+.+.+--|-++|+.+-.++|.
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 89999999999998887656666655555 5688999998899999988888875
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=98.83 E-value=3.6e-07 Score=111.37 Aligned_cols=211 Identities=12% Similarity=0.022 Sum_probs=154.9
Q ss_pred CCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSAN--K-TLASWNCMIMGFAIYGNGKEAILLF 792 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~Al~l~ 792 (1076)
+++++|...++.+++. .| +...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+
T Consensus 318 ~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4467777778777773 44 566777888889999999999999988664 3 4567888899999999999999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038364 793 HELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK 869 (1076)
Q Consensus 793 ~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~ 869 (1076)
++..+ +.|+.. .+..++..+...|++++|...++++.+. ..|+ +..+..+...|...|+.++|.+.++++ +..
T Consensus 396 ~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 396 NECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 99998 566643 2333444566789999999999888653 2343 445777888999999999999999887 445
Q ss_pred CCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 870 PDAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 870 pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|+.. .++.+...+...| +.|...++++++..-..+..+..+..+|+-.|+-+.+... +++.+.|
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 5544 4445555566666 5888888887765433333444577888888887777776 7775543
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.81 E-value=4.4e-07 Score=101.42 Aligned_cols=210 Identities=14% Similarity=0.048 Sum_probs=149.6
Q ss_pred CchhHHHHHHHHHHcC-CCC--ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHH
Q 038364 718 LLQNGKEIHCLCLKNG-FIK--DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILL 791 (1076)
Q Consensus 718 ~~~~a~~i~~~~~~~g-~~~--d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l 791 (1076)
..+.+..-+..++... ..| ....|..+...|.+.|++++|...|++..+ .+...|+.+...+...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555555431 222 245677788899999999999999987654 4567899999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-C
Q 038364 792 FHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-F 868 (1076)
Q Consensus 792 ~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~ 868 (1076)
|++..+ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. . .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 67765 56777777788999999999999988753 454332222233445678899999999664 2 2
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHh-------cCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 869 KPDATIWGALLGSCRIHGHLEYAEIASRRLF-------KLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~-------~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.|+. |.. .......|+...+ ..++.+. ++.|+.++.|..|+.+|.+.|++++|...+++..+.+
T Consensus 196 ~~~~--~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQ--WGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Cccc--cHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333 331 2233345666554 2444443 4556677889999999999999999999999986654
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=3.2e-05 Score=89.23 Aligned_cols=414 Identities=14% Similarity=0.117 Sum_probs=208.7
Q ss_pred hCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccH-HHHHHHHHhcCchHHHH
Q 038364 474 GLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSV-SVVLQAVTELRLLKYGR 552 (1076)
Q Consensus 474 ~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~-~~ll~a~~~~g~~~~a~ 552 (1076)
..|+-++|.+..+.-....++ +.+.|+.+.-.+....++++|++.|+.....+ ||.... .-+----++.++++...
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 446666777666666665555 66777777777777777777777777776655 553221 11111111222222221
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 038364 553 ESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEE-IKP 631 (1076)
Q Consensus 553 ~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g-~~p 631 (1076)
.......+ ........|.....++.-.|+...|..+.++..+.. -.|
T Consensus 130 ~tr~~LLq--------------------------------l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~ 177 (700)
T KOG1156|consen 130 ETRNQLLQ--------------------------------LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP 177 (700)
T ss_pred HHHHHHHH--------------------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 11111111 112344566666667777777777777777666543 234
Q ss_pred Cccchhhhh------hhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhh
Q 038364 632 DLVSWNSLV------SGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTT 705 (1076)
Q Consensus 632 d~~t~~~Li------~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t 705 (1076)
+...|.-.. .-..+.|..++|.+.+..-... +.-....-.+..+.+.+.++.++|..++..++. ..||..-
T Consensus 178 s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~--rnPdn~~ 254 (700)
T KOG1156|consen 178 SKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE--RNPDNLD 254 (700)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh--hCchhHH
Confidence 444442221 2234456666666655544321 111122223345566677777777777777765 3566666
Q ss_pred HHHHHHHHh-cC-CCchhHHHHHHHHHHc---CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh-HHHHHHHHHH
Q 038364 706 MSSLLQTCG-GL-GLLQNGKEIHCLCLKN---GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTL-ASWNCMIMGF 779 (1076)
Q Consensus 706 ~~~lL~a~~-~~-g~~~~a~~i~~~~~~~---g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-~s~n~li~~~ 779 (1076)
|.-.+..|. .. +..+....++....+. ...|-....+ +++ -..-.+...+++..+.++++ ..+..+.+-|
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl~---~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy 330 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VLN---GEELKEIVDKYLRPLLSKGVPSVFKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-HhC---cchhHHHHHHHHHHHhhcCCCchhhhhHHHH
Confidence 555555444 12 2222222444433321 0001100001 010 01112222233333333332 2233333333
Q ss_pred HHcCCHHHHHHHHHHHH----HCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-ccc
Q 038364 780 AIYGNGKEAILLFHELL----ETG----------FQPDAI--TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEH 842 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~----~~g----------~~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~ 842 (1076)
-.-...+-..++.-.+. ..| -.|... |+..+...+-+.|+++.|..+.+... +..|+ ++.
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEl 407 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIEL 407 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHH
Confidence 22221111111111111 111 144444 33445556788888888888888775 55676 557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc------h-hHH--H
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS------A-NYN--L 911 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~------~-~y~--~ 911 (1076)
|-.-..++..+|.+++|..++++.. ..||..+-.--..-..+..+.++|.+++.+...-+-+-. . .+. -
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E 487 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLE 487 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHh
Confidence 7777788888889998888888863 345544333333444567788888887776554332100 0 011 1
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 038364 912 MMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m 932 (1076)
=+..|.++|+|.+|++-+...
T Consensus 488 ~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 488 DGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHHHHhhH
Confidence 256788888888887766655
No 74
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=0.00058 Score=80.29 Aligned_cols=407 Identities=14% Similarity=0.076 Sum_probs=241.4
Q ss_pred CCCCCCchhhhHHHH--HHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhC-CC-------
Q 038364 221 GKIWNSDDMVKSLIF--HYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGK-GV------- 290 (1076)
Q Consensus 221 g~~~~~~~~~~~ll~--~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~-g~------- 290 (1076)
|++.-|+.+...+++ .|.-.|+.+.|.+....+. +-+.|..|.+.+.+..+. +.|.-.+..|... |.
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RL-DVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRL-DVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccc-cHHHHhhhhhhhhhhHHHHHHHH
Confidence 444345566666765 5778999999988776664 345799999999999988 8887777776431 21
Q ss_pred -CCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHH
Q 038364 291 -IFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIM 369 (1076)
Q Consensus 291 -~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~ 369 (1076)
.|+ .+=..+.-....+|.+++|+.++.+..+.. -|=..|...|.+++|.++-+.-.+..=-.+|-.-..
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 122 222233333456788888888888776543 233467788999999888764322011124444455
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHH
Q 038364 370 VKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLEL 449 (1076)
Q Consensus 370 ~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~ 449 (1076)
-+-..++.+.|++.|++-. + | .+-...+|.- ++. ++-.++.+ ..|...|.---.-.-..|++|.
T Consensus 867 ~Lear~Di~~AleyyEK~~---~-h-afev~rmL~e-----~p~---~~e~Yv~~---~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAG---V-H-AFEVFRMLKE-----YPK---QIEQYVRR---KRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHhhccHHHHHHHHHhcC---C-h-HHHHHHHHHh-----ChH---HHHHHHHh---ccchHHHHHHHHHHhcccchHH
Confidence 5556788888998888642 1 1 1111122211 111 11111211 1233444433444445799999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 038364 450 ATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFR 529 (1076)
Q Consensus 450 A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~ 529 (1076)
|..++.... .|-+|++..|-.|+.++|-++-++-- |..+..-|.+.|-..|++.+|..+|.+.+
T Consensus 931 Al~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq----- 994 (1416)
T KOG3617|consen 931 ALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ----- 994 (1416)
T ss_pred HHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----
Confidence 999987654 57788888888999999988876542 66677778889999999999999998775
Q ss_pred CCcccHHHHHHHHHhcCch---------------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 038364 530 PNGSSVSVVLQAVTELRLL---------------KYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMK 594 (1076)
Q Consensus 530 pd~~t~~~ll~a~~~~g~~---------------~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~ 594 (1076)
+|...|+.|-..+.- -.|...++ +.|.. ...-+-.|-|.|.+.+|.++--+-.
T Consensus 995 ----afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 995 ----AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred ----HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhc
Confidence 355555555443322 12222222 22211 1223456788888888777633322
Q ss_pred C--------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhH
Q 038364 595 N--------------RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMK 660 (1076)
Q Consensus 595 ~--------------~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~ 660 (1076)
+ .|....+--...++.+.++++|..++-..++- ..-+. .|+..++.-..++-+.|.
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMT 1132 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcC
Confidence 2 35566666677777888888888877665432 11122 222333333333333332
Q ss_pred h-cCCCCchH----HHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 661 N-SGIYPNVV----TWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 661 ~-~gi~pd~~----ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
- +.-.|+.. ....+...|.+.|.+..|-+-|-+.
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1 21233332 3445566777888877777666554
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00012 Score=83.84 Aligned_cols=184 Identities=15% Similarity=0.124 Sum_probs=119.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCC-hHHHHHHHH-HHHH-cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSANKT-LASWNCMIM-GFAI-YGNGKEAILLFHELLETGFQPDAI--TFTALLAACK 815 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~~d-~~s~n~li~-~~~~-~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~ 815 (1076)
-++++.+|. +..+.++++-...+... .....+++. ++.. .....+|.+++...-+. .|+.. .....+.--.
T Consensus 312 N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 356667765 45566777776666543 233344433 3322 22477788888777663 55553 3333444467
Q ss_pred hcCCHHHHHHHHH--------HhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHH
Q 038364 816 NSGLVEEGWKYFD--------SMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--------PFKPD-ATIWGAL 878 (1076)
Q Consensus 816 ~~g~~~eA~~~~~--------~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--------~~~pd-~~~~~~L 878 (1076)
..|+++.|.+++. .+.+ +.-.+.+...++.+|.+.+.-+-|..++.+. ...+. ..+|.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 7899999999988 4432 2333456677888999888766555555443 22222 2244444
Q ss_pred HHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 879 LGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 879 l~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
..--.++|+-++|...++++++.+|++....+.++-.|++.. .+.|+.+-+.+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 444567899999999999999999999999999999999874 46666655443
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.76 E-value=1.2e-06 Score=93.37 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=96.2
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038364 739 YVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAAC 814 (1076)
Q Consensus 739 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~ 814 (1076)
..+..+...|...|++++|.+.+++..+ .+...|..+...+...|++++|++.|++..+....|. ...+..+...+
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3444455555666666666666654432 2334555666666666677777776666665322222 23444455556
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
...|++++|.+.+++..+. ...+...+..+...+.+.|++++|.+.+++. . .+.+...+..+...+...|+.+.|.
T Consensus 146 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 6777777777777766543 1122445666777777777777777777665 1 2234455556666677777777777
Q ss_pred HHHHHHhcCC
Q 038364 893 IASRRLFKLE 902 (1076)
Q Consensus 893 ~~~~~l~~l~ 902 (1076)
...+.+.+..
T Consensus 224 ~~~~~~~~~~ 233 (234)
T TIGR02521 224 RYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhhC
Confidence 7777665543
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=0.00012 Score=86.12 Aligned_cols=131 Identities=19% Similarity=0.192 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVD 848 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~ 848 (1076)
.|......+.+.+..++|..-+.+... +.|-.. .|.-.-..+...|..+||.+.|.... .+.|+ +....++..
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 466667788888888888877777765 444443 33333334667788999999888774 56676 557788899
Q ss_pred HHHhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 849 LLGKAGYLDEAWD--FIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 849 ~l~r~G~l~eA~~--l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
++.+.|+-.-|.. +..++ ...| +...|..|.....+.|+.+.|...|..++++++.+|
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999997666666 77776 4445 567999999999999999999999999999988765
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=7.5e-05 Score=85.40 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=79.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHH--HHHHH--Hh
Q 038364 368 IMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNC--LISMY--SR 443 (1076)
Q Consensus 368 i~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~--Li~~y--~k 443 (1076)
++-+.++|++++|+..-.++...+ +-|...+..-+-+..+.+.++.|..+.. +.+. ..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 456677888999999988887655 4455566666667778888888774432 2221 111122 23344 36
Q ss_pred CCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 038364 444 NNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQ 494 (1076)
Q Consensus 444 ~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 494 (1076)
.+..|+|.+.++.....+..+...--..+.+.|++++|+++|+.+.+.+..
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 788888888888665555556666666778888888888888888776443
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.74 E-value=1.6e-06 Score=101.33 Aligned_cols=235 Identities=16% Similarity=0.145 Sum_probs=147.6
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhc-----C-CCCchHH-HHHHHHHHhcCCChhHHHHHHHHHhhc---CCCCChh
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNS-----G-IYPNVVT-WTSLISGSLQNENYRESLKFFIQMQQE---DIKPNST 704 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~-----g-i~pd~~t-y~~LI~~~~~~g~~~eAl~l~~~m~~~---gi~pd~~ 704 (1076)
|...|..+|...|+++.|..+++...+. | ..|.+.+ -+.+...|...+++++|..+|+++... ..-++..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444667777777777777777665432 1 0122211 222444556666666666666665431 0001110
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC----------CChH-HHH
Q 038364 705 TMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN----------KTLA-SWN 773 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~d~~-s~n 773 (1076)
.-..+++.|...|.+.|++++|...+++..+ +.+. ..+
T Consensus 281 -------------------------------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 281 -------------------------------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 0123344555566666666666655553321 1222 356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcC----C-CCCC-c
Q 038364 774 CMIMGFAIYGNGKEAILLFHELLET---GFQPDA----ITFTALLAACKNSGLVEEGWKYFDSMSTDY----N-IIPT-I 840 (1076)
Q Consensus 774 ~li~~~~~~g~~~~Al~l~~~M~~~---g~~Pd~----~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~----g-~~p~-~ 840 (1076)
.++..+...+++++|..++++..+. -..++. -++..+-..|.+.|+++||.++|+++.... + ..+. .
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6777788888888888887765531 123333 367888888889999999999988876542 1 1222 4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM--------PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFK 900 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m--------~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~ 900 (1076)
..++.|...|.+.++.++|.++|.+. +..|+.. +|..|...|+..|++|.|+++.+++..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 46778888889999999888888774 2445554 899999999999999999999988763
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=0.00042 Score=83.55 Aligned_cols=177 Identities=16% Similarity=0.043 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHhCCCCCCchhhhHHHHHHHccCChhhHHHHhhhcC---CCCcccHHHHHHHHHhCCCChHHHHHHHHHH
Q 038364 209 SVKSKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYF---SRSYADWSSFLEDYESFGGEVQELLEVWGEL 285 (1076)
Q Consensus 209 ~~~~~h~~~~~~g~~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~---~~~~~~wn~li~~~~~~g~~~~~al~lf~~m 285 (1076)
....+|+.+....+...=...+..|-.-|...-+...|+++|+... ..+..+|-....-|++...+ ++|+...-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w-e~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW-EEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH-HHHHHHHHHH
Confidence 4566777766555541222456777777887767888999998764 45667888899999999999 8888772221
Q ss_pred HhCC-CCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhH
Q 038364 286 HGKG-VIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLW 364 (1076)
Q Consensus 286 ~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~ 364 (1076)
-+.. ...-...+..+--.+...++...+..-++..++.. .-|...|..|..+|.++|++..|.++|+.... -+..+|
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-LrP~s~ 630 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL-LRPLSK 630 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh-cCcHhH
Confidence 1110 00001111111112333444444444444444433 23667888899999999999999999987765 333333
Q ss_pred HHH---HHHHHhCCChhHHHHHHHHHH
Q 038364 365 NEI---IMVKLRNEKWENAIKLFREMQ 388 (1076)
Q Consensus 365 n~l---i~~~~~~g~~~eAl~lf~~M~ 388 (1076)
-.- -..-+.+|.+.+|+..+....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 321 223467888899888887765
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=0.00035 Score=84.21 Aligned_cols=545 Identities=12% Similarity=0.055 Sum_probs=290.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHh
Q 038364 377 WENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDS 456 (1076)
Q Consensus 377 ~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~ 456 (1076)
...|+..|-+-.+..+ -=...|..|-..|+...+...|.+.|....+.. ..|...+.++.+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 6667776665554321 112356677777776667777888887776554 33566788888999999999999888555
Q ss_pred cCCCChh---HHH--HHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 038364 457 MKDHNLS---SWN--SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPN 531 (1076)
Q Consensus 457 m~~~d~~---s~n--~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd 531 (1076)
..+++.. .|| -.--.|.+.++...|+.-|+...+..++ |...|..+..+|...|++..|+++|.+...-. |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 4444332 333 3333466778888888888888887777 88889999999999999999999998876643 54
Q ss_pred cccHHHHHHH--HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhC-------CCHHHHHHHHhhcCC-------
Q 038364 532 GSSVSVVLQA--VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKN-------DCLQNAQEVFDNMKN------- 595 (1076)
Q Consensus 532 ~~t~~~ll~a--~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~-------g~~~~A~~lf~~m~~------- 595 (1076)
. +|.....+ -+..|.+.++...++.++..--. -....+.|...+.++ |-...|.+.|+.-.+
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~-e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSL-ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3 33333322 24567777777777766543100 111112222222221 222222222221111
Q ss_pred ----CCHhHHHHHHHHHH---hcC--ChH-HHHH-HHHHHHHcCC--------------------CCCccchhhhhhhhh
Q 038364 596 ----RNIVAWNSLISGYC---FKG--LFV-NAKK-MLNQMEEEEI--------------------KPDLVSWNSLVSGYS 644 (1076)
Q Consensus 596 ----~d~~~~n~lI~~~~---~~g--~~~-~A~~-lf~~M~~~g~--------------------~pd~~t~~~Li~~y~ 644 (1076)
.|...|-.+-.++. +.. .+. --+. ++.+....+. ..+..+|..|...|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 12222222211110 000 000 0000 0111111111 112334433333332
Q ss_pred h----cC----ChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 038364 645 I----WG----QSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGL 716 (1076)
Q Consensus 645 k----~g----~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~ 716 (1076)
+ +| +...|...+....+. ...+..+||.|--. ...|++.-|...|-+-... .+-+..+|..+--.|...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEec
Confidence 2 22 223455555544431 12355566655444 4445666665555554432 233455666666667777
Q ss_pred CCchhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHh-----cC---CCChHHHHHHHHHHHHcCCHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSGNLKSAREVFRK-----SA---NKTLASWNCMIMGFAIYGNGKE 787 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G~~~~A~~vf~~-----m~---~~d~~s~n~li~~~~~~g~~~~ 787 (1076)
.+++.|.+.+..... +.|+ ..-|--..-.-...|+.-++..+|.. +. -++..-|-.-..-..++|+.++
T Consensus 864 ~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred ccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 777777777776665 3442 22222222223345666666666653 11 1233444444444455666555
Q ss_pred HHHHHHHHHH---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH----HHHHHHhcC
Q 038364 788 AILLFHELLE---------TGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC----MVDLLGKAG 854 (1076)
Q Consensus 788 Al~l~~~M~~---------~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~----li~~l~r~G 854 (1076)
-+..-++... .|..-+...|....+..-+.+...+|.+...+...-...+-+...|+. ...++...|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 4433222211 123334456777777777777777777666654432222334444553 334555667
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHH---HHHHHHcCChHHHHHHHHH
Q 038364 855 YLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLM---MNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 855 ~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L---~~~y~~~G~~~eA~~~~~~ 931 (1076)
.++.|..-+...+.+.|..+-.+-+.. .-.|+++.+...|++++.+-..+...-+++ ......++.-+.|....-+
T Consensus 1022 efe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred chhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 777776666555544555544444444 456889999999999998765544433333 3344556667778776666
Q ss_pred HHh
Q 038364 932 MDE 934 (1076)
Q Consensus 932 m~~ 934 (1076)
...
T Consensus 1101 ~~~ 1103 (1238)
T KOG1127|consen 1101 VKS 1103 (1238)
T ss_pred HHH
Confidence 544
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=0.00017 Score=78.98 Aligned_cols=266 Identities=13% Similarity=0.025 Sum_probs=170.5
Q ss_pred CccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHH-HHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHH
Q 038364 632 DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVT-WTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLL 710 (1076)
Q Consensus 632 d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~t-y~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL 710 (1076)
|+.-...+.+.+...|+.++|...|++.... .|+.++ .....-.+.+.|++++.-.+...+.... +-...-|..-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3344455555666666666666666654432 222111 1111223455666666666666554321 11122222222
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKE 787 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~ 787 (1076)
......++++.|..+-+..++.. +.++..+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|+..|
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 23334556666666666655521 12333444445667778999999999986543 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHH
Q 038364 788 AILLFHELLETGFQPDAITFTALL-AACKN-SGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIR 864 (1076)
Q Consensus 788 Al~l~~~M~~~g~~Pd~~t~~~ll-~a~~~-~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~ 864 (1076)
|..+-+..... +.-+..+...+- ..|.- .-.-++|.+++++-. .+.|+ ....+.+..++.+.|+.+++..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99887776552 223333433331 12222 223477888887764 45676 4466778889999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 865 TM-PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 865 ~m-~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+. ...||...-+.|.+..+..+.+.+|...|..++.++|++
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 86 577999999999999999999999999999999999987
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=9.5e-05 Score=80.89 Aligned_cols=353 Identities=10% Similarity=0.025 Sum_probs=226.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC-CHhHHHHHHHHHHhcCC--hHH-------------HHHHHHHHHHcCC-----
Q 038364 571 TSLMDMYVKNDCLQNAQEVFDNMKNR-NIVAWNSLISGYCFKGL--FVN-------------AKKMLNQMEEEEI----- 629 (1076)
Q Consensus 571 ~aLi~~y~k~g~~~~A~~lf~~m~~~-d~~~~n~lI~~~~~~g~--~~~-------------A~~lf~~M~~~g~----- 629 (1076)
.-.+.+|...++-+.|.....+.+.. ...--|.|+.-+.++|- .++ |++.+.-..+.++
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~ 180 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEI 180 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhh
Confidence 34566677777777787777777653 23333444443333331 111 1222222222222
Q ss_pred ----------CCCccchhhhhhhhh--hcCChhHHHHHHHHhHhc-CCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 038364 630 ----------KPDLVSWNSLVSGYS--IWGQSKEALVIIHHMKNS-GIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 630 ----------~pd~~t~~~Li~~y~--k~g~~~~A~~lf~~m~~~-gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~ 696 (1076)
.|+..+...-+.+++ ..++...|...|-.+... -+.-|+.....+.+.+...|+.++|...|++.+.
T Consensus 181 ~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 181 NSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred hhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 222222333344443 345556666665555542 3455677788999999999999999999998864
Q ss_pred cCCCCChhh----HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---Ch
Q 038364 697 EDIKPNSTT----MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK---TL 769 (1076)
Q Consensus 697 ~gi~pd~~t----~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~ 769 (1076)
+.|+.++ |..|| ...|+.+....+...+.... ......|-.-........+.+.|..+-++..+- ++
T Consensus 261 --~dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 261 --ANPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred --CChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 4565443 33333 45677777777766665431 111222222223334456777888777766543 44
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHH-
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV- 847 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li- 847 (1076)
..+-.-...+.+.|+.++|.-.|+..+. +.|.. ..|..|+..|...|.+.||.-.-+...+. +..+..+...+.
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGT 410 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcc
Confidence 4555555788899999999999999887 56544 68999999999999999988766555432 222333333331
Q ss_pred HHHH-hcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 848 DLLG-KAGYLDEAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 848 ~~l~-r~G~l~eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
+.+. ..---++|.+++++. .++|+-. ..+.+...|...|..+.++.++++.+...|++ ...+.|++++...+.+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHH
Confidence 2222 223457899999885 6788755 55666677999999999999999999999875 678899999999999999
Q ss_pred HHHHHHHHHh
Q 038364 925 VERLRHSMDE 934 (1076)
Q Consensus 925 A~~~~~~m~~ 934 (1076)
|.+.+.....
T Consensus 490 am~~y~~ALr 499 (564)
T KOG1174|consen 490 AMEYYYKALR 499 (564)
T ss_pred HHHHHHHHHh
Confidence 9999988744
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.67 E-value=4e-06 Score=93.77 Aligned_cols=208 Identities=11% Similarity=-0.044 Sum_probs=134.2
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIY 782 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~ 782 (1076)
|..+-..+...|+.+.|...+..+++. -..+...|+.+...|...|++++|.+.|++..+ .+...|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALAL-RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 333444445555555555555555552 122456777888888888888888888887654 2456788888888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHH--HH
Q 038364 783 GNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDE--AW 860 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~e--A~ 860 (1076)
|++++|++.|++..+ ..|+..........+...++.++|.+.|.+... ...|+... ..++.. ..|++++ +.
T Consensus 146 g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~~--~lg~~~~~~~~ 218 (296)
T PRK11189 146 GRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVEF--YLGKISEETLM 218 (296)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHHH--HccCCCHHHHH
Confidence 999999999999887 466554222222224456789999999876543 22333322 233333 3444433 33
Q ss_pred HHHHhC-CC----CC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC-CCchhHHHHHHHHHHcCC
Q 038364 861 DFIRTM-PF----KP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEP-CNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 861 ~l~~~m-~~----~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P-~~~~~y~~L~~~y~~~G~ 921 (1076)
+.+.+- .. .| ....|..+...+...|++++|+..|+++++++| +..++-..++.+....++
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 333221 11 12 335799999999999999999999999999996 666666666666554444
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.66 E-value=5.5e-05 Score=89.67 Aligned_cols=291 Identities=13% Similarity=0.110 Sum_probs=141.8
Q ss_pred HHHHhCCChHHHHHHHHhcCC--CChhHH-HHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----
Q 038364 439 SMYSRNNKLELATRVFDSMKD--HNLSSW-NSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH----- 510 (1076)
Q Consensus 439 ~~y~k~g~~~~A~~lf~~m~~--~d~~s~-n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~----- 510 (1076)
..+...|+.++|.+.++.-.. .|..+| ......+.+.|+.++|...++.+.+.++. |..-|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccc
Confidence 344566777777777765432 243333 34445566677777777777777766543 444444444444222
Q ss_pred CChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCch-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 038364 511 GSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLL-KYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589 (1076)
Q Consensus 511 g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~-~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~l 589 (1076)
...+...++++++...- |.......+.-.+.....+ ..+.......++.|++ .+++.|-..|......+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 24455566666665554 4333332221111111111 2233334444444543 2344455555433333333333
Q ss_pred HhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----------CCCCcc--chhhhhhhhhhcCChhHHHHHHH
Q 038364 590 FDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEE----------IKPDLV--SWNSLVSGYSIWGQSKEALVIIH 657 (1076)
Q Consensus 590 f~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g----------~~pd~~--t~~~Li~~y~k~g~~~~A~~lf~ 657 (1076)
+.... ..+...+ -.|... ++.-+...|.+.|++++|+++.+
T Consensus 166 ~~~~~---------------------------~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 166 VEEYV---------------------------NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred HHHHH---------------------------HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 32221 0000000 011221 22333444555666666666666
Q ss_pred HhHhcCCCCc-hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCC
Q 038364 658 HMKNSGIYPN-VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK 736 (1076)
Q Consensus 658 ~m~~~gi~pd-~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~ 736 (1076)
+..++ .|+ +..|..-...|-+.|++.+|.+.++..+... .-|...-+.....+.+.|++++|.++.....+.+..|
T Consensus 219 ~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 55554 333 3455555555666666666666666555432 2244444555555556666666666666655544322
Q ss_pred C--------hhhHHHHHHHHhhcCCHHHHHHHHHhcC
Q 038364 737 D--------AYVATGLIDMYSKSGNLKSAREVFRKSA 765 (1076)
Q Consensus 737 d--------~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 765 (1076)
- ......-..+|.+.|++..|.+-|..+.
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 1122445667777888877777665443
No 86
>PRK12370 invasion protein regulator; Provisional
Probab=98.65 E-value=5e-06 Score=101.42 Aligned_cols=177 Identities=13% Similarity=0.019 Sum_probs=102.2
Q ss_pred CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHH
Q 038364 445 NKLELATRVFDSMKD---HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLR 521 (1076)
Q Consensus 445 g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~ 521 (1076)
+++++|...+++..+ .+...|..+-..+...|++++|...|++..+.++. +...|..+...+...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345666666665532 24445666666666677777777777777666543 45566666667777777777777777
Q ss_pred HHHhcCCCCCcc-cHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---C
Q 038364 522 GMQSLGFRPNGS-SVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNR---N 597 (1076)
Q Consensus 522 ~m~~~gi~pd~~-t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~---d 597 (1076)
+..+.. |+.. .+...+..+...|++++|...+..+.+...+.+...+..+...|...|+.++|...+.++... +
T Consensus 397 ~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 397 ECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 766654 4432 122223334445566666666655554432223444555666677777777777777665542 2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 598 IVAWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 598 ~~~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
...++.+...|+..| ++|...++.+.+
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 334455555556555 366665655543
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=0.00014 Score=77.91 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=47.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcC
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN---KTLASWNCM-IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLA-ACKNSG 818 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~l-i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~-a~~~~g 818 (1076)
+..+++..|.+.+|+++|-++.. +|-.+|.+| ..+|.++++++-|.+++-++. -..+..+..-+|. -|-+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHH
Confidence 55555666666666666655543 334455443 355566666665544433332 2223333333332 366666
Q ss_pred CHHHHHHHHHHhhhcCCCCCCcccH
Q 038364 819 LVEEGWKYFDSMSTDYNIIPTIEHY 843 (1076)
Q Consensus 819 ~~~eA~~~~~~m~~~~g~~p~~~~y 843 (1076)
.+=-|.+.|+.+. ...|+++.|
T Consensus 476 eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 476 EFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHHHhhhHHH---ccCCCcccc
Confidence 6666666666554 235555544
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1e-06 Score=93.07 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=94.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCH
Q 038364 778 GFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYL 856 (1076)
Q Consensus 778 ~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l 856 (1076)
.+-..++.++|+++|++..+ ..|+.+ ...++...|...++.+-|..++.++..- |+ -+++.|+.+.-.+.-++++
T Consensus 299 i~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcch
Confidence 33333444444444444443 222221 2233333344444445555554444432 32 1233444444444444445
Q ss_pred HHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 857 DEAWDFIRTMP---FKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 857 ~eA~~l~~~m~---~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
|-++.-|++.. ..|+ ..+|..|.......||+..|.+.|+-++.-+|++.++|+.|+-+-.+.|+.++|..++..
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 44444444431 1233 347888888888889999999999999999999999999999999999999999999998
Q ss_pred HHhC
Q 038364 932 MDEV 935 (1076)
Q Consensus 932 m~~~ 935 (1076)
.+..
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 8654
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.61 E-value=2.3e-06 Score=87.15 Aligned_cols=161 Identities=14% Similarity=0.104 Sum_probs=137.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL 849 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~ 849 (1076)
.-.+.-+|.+.|+...|.+-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34567788899999999999999888 577764 788888889999999999999988864 4565 5678888889
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHH
Q 038364 850 LGKAGYLDEAWDFIRTMPFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA 925 (1076)
+|..|++++|...|++....|+ ..+|..+..+-.+.|+.+.|+..+++.++++|+++...-.+.+...+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998743332 457888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 038364 926 ERLRHSMDEVGV 937 (1076)
Q Consensus 926 ~~~~~~m~~~g~ 937 (1076)
.-.++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999877663
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.60 E-value=0.00086 Score=77.82 Aligned_cols=246 Identities=13% Similarity=0.026 Sum_probs=149.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHH
Q 038364 410 GAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD---HNLSSWNSMISSYTGLGYVDVAWSLFN 486 (1076)
Q Consensus 410 g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~~A~~lf~ 486 (1076)
+.+..|....+.+++. +.....+....--.+...|+-++|......-.. ++-++|..+--.+-...++++|++.|+
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 4455555555555552 222222222222223455777777766655433 455678877777777778888888888
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCchHHHHHHHHHHHHcCC-C
Q 038364 487 KMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPN-GSSVSVVLQAVTELRLLKYGRESHGYILRNGL-D 564 (1076)
Q Consensus 487 ~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~-~ 564 (1076)
.....+.. |...|.-+--.-++.++++..........+.. |. ...|.....+.--.|+...|..+.++..+... .
T Consensus 100 nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 100 NALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 88776655 77777777777777788877777776666543 43 34455666666677888888888887776652 3
Q ss_pred CchhHHHHHH------HHHHhCCCHHHHHHHHhhcCCC--CH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccc
Q 038364 565 YDLYVGTSLM------DMYVKNDCLQNAQEVFDNMKNR--NI-VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVS 635 (1076)
Q Consensus 565 ~d~~v~~aLi------~~y~k~g~~~~A~~lf~~m~~~--d~-~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t 635 (1076)
|+...+.-.. ....+.|..+.|.+.+...... |- ..--+...-+.+.++.++|..++..++.. .||.+-
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~ 254 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLD 254 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHH
Confidence 4444333222 2235677778887777665431 22 22334556677888888888888888876 477776
Q ss_pred hhhhhhh-hhhcCChhHHH-HHHHHhHh
Q 038364 636 WNSLVSG-YSIWGQSKEAL-VIIHHMKN 661 (1076)
Q Consensus 636 ~~~Li~~-y~k~g~~~~A~-~lf~~m~~ 661 (1076)
|...+.. +.+--+.-++. .+|....+
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 6554433 33333334444 55655543
No 91
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=5.4e-06 Score=87.71 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=160.7
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccch-hhhhhh
Q 038364 566 DLYVGTSLMDMYVKNDCLQNAQEVFDNMKN--RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW-NSLVSG 642 (1076)
Q Consensus 566 d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~--~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~-~~Li~~ 642 (1076)
|-.--+.+..+|.+.|.+.+|++.|+.-.+ +-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+|| ..+...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 334446778888888999999888877653 67778888888888888999999888887755 5777776 345566
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhH
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNG 722 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a 722 (1076)
+-..++.++|.++++...+.. ..++....++..+|.-.++++-|+.+++++.+.|+. +...|..+--+|.-.+.++.+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 667788888888888877631 346667777778888888888888888888887764 455677777777777788877
Q ss_pred HHHHHHHHHcCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 723 KEIHCLCLKNGFIKD--AYVATGLIDMYSKSGNLKSAREVFRKSANKT---LASWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 723 ~~i~~~~~~~g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
..-+......--.|+ ..+|-.|.......|++.-|.+.|+-....| ..++|.|.-.-.+.|+.++|..++.....
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 777776665433333 3455556666667777777777776554322 24555555555556666666666555544
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.53 E-value=0.0015 Score=85.39 Aligned_cols=360 Identities=11% Similarity=0.010 Sum_probs=193.5
Q ss_pred HHhCCCHHHHHHHHhhcCCCCHhH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHH
Q 038364 577 YVKNDCLQNAQEVFDNMKNRNIVA--WNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 577 y~k~g~~~~A~~lf~~m~~~d~~~--~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~ 654 (1076)
|...|++.+|..........+... ...........|+.+.+...+..+.......+..........+...|++++|..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 445555555555555444332111 111122334456666655555554221111122222233334455677777777
Q ss_pred HHHHhHhc--CC----CCch--HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh----hhHHHHHHHHhcCCCchhH
Q 038364 655 IIHHMKNS--GI----YPNV--VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS----TTMSSLLQTCGGLGLLQNG 722 (1076)
Q Consensus 655 lf~~m~~~--gi----~pd~--~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~----~t~~~lL~a~~~~g~~~~a 722 (1076)
++....+. .. .+.. .....+...+...|++++|...+++....-...+. .....+...+...|+++.|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 76665431 00 0111 11112223445677777887777776542111111 2233344445567788877
Q ss_pred HHHHHHHHHcCCC-----CChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-------CC----hHHHHHHHHHHHHcCCHH
Q 038364 723 KEIHCLCLKNGFI-----KDAYVATGLIDMYSKSGNLKSAREVFRKSAN-------KT----LASWNCMIMGFAIYGNGK 786 (1076)
Q Consensus 723 ~~i~~~~~~~g~~-----~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~d----~~s~n~li~~~~~~g~~~ 786 (1076)
...+.......-. ........+...+...|++++|...+++... .+ ...+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 7777666542111 1123445566677778888888877765332 11 123344555666678888
Q ss_pred HHHHHHHHHHHC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccH-----HHHHHHHHhcCCHH
Q 038364 787 EAILLFHELLET--GFQPDA--ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHY-----SCMVDLLGKAGYLD 857 (1076)
Q Consensus 787 ~Al~l~~~M~~~--g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y-----~~li~~l~r~G~l~ 857 (1076)
+|...+++.... ...+.. ..+..+.......|+.++|.+.++.......-......+ ......+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 888888776542 112222 233334445677888888888887764321111111111 11224445678888
Q ss_pred HHHHHHHhCCCC--CCH----HHHHHHHHHHHHcCCchHHHHHHHHHhcCC------CCCchhHHHHHHHHHHcCChHHH
Q 038364 858 EAWDFIRTMPFK--PDA----TIWGALLGSCRIHGHLEYAEIASRRLFKLE------PCNSANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 858 eA~~l~~~m~~~--pd~----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~------P~~~~~y~~L~~~y~~~G~~~eA 925 (1076)
+|.+++...... ... ..+..+..++...|+.++|...++++++.. +.....+..++.+|.+.|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888888765311 111 123455566778888899988888877642 12234577888888999999999
Q ss_pred HHHHHHHHhCC
Q 038364 926 ERLRHSMDEVG 936 (1076)
Q Consensus 926 ~~~~~~m~~~g 936 (1076)
.+.+.+..+..
T Consensus 751 ~~~L~~Al~la 761 (903)
T PRK04841 751 QRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHh
Confidence 88888876543
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.00067 Score=76.99 Aligned_cols=171 Identities=13% Similarity=0.140 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHhhc-CCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHH
Q 038364 684 YRESLKFFIQMQQE-DIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVF 761 (1076)
Q Consensus 684 ~~eAl~l~~~m~~~-gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf 761 (1076)
.+...+.++++... .+.| ..+|...++...+..-++.|+.+|..+.+.+..+ +++++++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 44444555555432 2223 2456666666666667777777777777766655 66777777776653 5666777777
Q ss_pred HhcCC--CChHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC-
Q 038364 762 RKSAN--KTLASW-NCMIMGFAIYGNGKEAILLFHELLETGFQPDA--ITFTALLAACKNSGLVEEGWKYFDSMSTDYN- 835 (1076)
Q Consensus 762 ~~m~~--~d~~s~-n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g- 835 (1076)
+.... .|...| +..+.-+...++-..|..+|++....++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 65443 243333 45566666667777777777777766666655 3566666666666777766666666555433
Q ss_pred -CCCCcccHHHHHHHHHhcCCH
Q 038364 836 -IIPTIEHYSCMVDLLGKAGYL 856 (1076)
Q Consensus 836 -~~p~~~~y~~li~~l~r~G~l 856 (1076)
..+...+-..+++.|+-.++.
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 333334444555555544443
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.8e-05 Score=84.24 Aligned_cols=217 Identities=13% Similarity=0.055 Sum_probs=153.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHH----------HHHH
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLAS----------WNCM 775 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s----------~n~l 775 (1076)
...+.++.-+..+++.+.+-+...++.. .++..++.....|...|...+....-+...+.+-.. ...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3455666666777788888887777743 666667777888888888877776665544433222 2234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcc-cHHHHHHHHHhcC
Q 038364 776 IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIE-HYSCMVDLLGKAG 854 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~-~y~~li~~l~r~G 854 (1076)
..+|.+.++++.|+..|++....-..||..+- ....+++.+..+... -+.|... --..-...+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~---------lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSK---------LKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHH---------HHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 45778888999999999998776556554322 223444444443332 2334321 1112256778899
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 855 YLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 855 ~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
++.+|.+.+.++ . .+-|...|.....+|.+.|++..|+.-.+..++++|+....|.--+-++....+|++|.+.+.+-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 2 34466788888888899999999999999999999999999998899999999999999999887
Q ss_pred HhCC
Q 038364 933 DEVG 936 (1076)
Q Consensus 933 ~~~g 936 (1076)
.+..
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 6654
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.43 E-value=9.7e-06 Score=89.61 Aligned_cols=251 Identities=14% Similarity=0.090 Sum_probs=147.5
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhH
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNG 722 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a 722 (1076)
+...|++..+..-.+ .....-..+.....-+.+++...|+.+.++. ++... -.|.......+...+....+-+..
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 344566666665444 2222222234445556677777887765443 33332 256665555555555443333333
Q ss_pred HHHHHHHHHcCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 038364 723 KEIHCLCLKNGFI-KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQ 801 (1076)
Q Consensus 723 ~~i~~~~~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~ 801 (1076)
..-+...+..... .+..+......+|...|++++|.+++.+. .+.......+..|.+.++.+.|.+.++.|.+ +.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 3333222222222 23444455567788899999999888765 4555666678888899999999999999987 44
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 038364 802 PDAITFTALLAACKN----SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIW 875 (1076)
Q Consensus 802 Pd~~t~~~ll~a~~~----~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~ 875 (1076)
.|.. ..-+..++.. .+.+.+|..+|+++..+ ..+++.+.+.+..+....|+++||.+++++. ...| |..++
T Consensus 162 eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 5543 3334443221 23578888888888764 3456677777777888888888888877774 3333 44466
Q ss_pred HHHHHHHHHcCCc-hHHHHHHHHHhcCCCCC
Q 038364 876 GALLGSCRIHGHL-EYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 876 ~~Ll~a~~~~g~~-e~A~~~~~~l~~l~P~~ 905 (1076)
..++-.+...|+. +.+.+...++....|++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 6666666666766 56667777777777765
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.41 E-value=0.00011 Score=87.03 Aligned_cols=298 Identities=17% Similarity=0.123 Sum_probs=136.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCccch-hhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHH-HHHHHHHHhcC--
Q 038364 606 SGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW-NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVT-WTSLISGSLQN-- 681 (1076)
Q Consensus 606 ~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~-~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~t-y~~LI~~~~~~-- 681 (1076)
..+...|++++|++.+.+-... .+|..++ ......+.+.|+.++|..++..+.++ .|+... |..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 3456778888888888664432 3454444 45566777778888888888888776 344444 34444444222
Q ss_pred ---CChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCc-hhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH
Q 038364 682 ---ENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLL-QNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSA 757 (1076)
Q Consensus 682 ---g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~-~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A 757 (1076)
...+...++++++... -|.......+.-.+..-..+ ..+.......++.|++ .+++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 2455666677766543 24333333222222211111 1233333444444432 3445555555544444433
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 038364 758 REVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI--TFTALLAACKNSGLVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 758 ~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g 835 (1076)
.+++...... ...++.....- ....-.|... ++..+...|.+.|++++|.++.++..+
T Consensus 163 ~~l~~~~~~~-----------l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--- 222 (517)
T PF12569_consen 163 ESLVEEYVNS-----------LESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--- 222 (517)
T ss_pred HHHHHHHHHh-----------hcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---
Confidence 3333322100 00000000000 0000112221 222223334555555555555555543
Q ss_pred CCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC--CCC-----
Q 038364 836 IIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-F-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLE--PCN----- 905 (1076)
Q Consensus 836 ~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~--P~~----- 905 (1076)
..|+ ++.|..-...|-+.|++++|.+.++... . ..|-.+-+-....+.+.|++++|+..+.....-+ |..
T Consensus 223 htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 223 HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 2344 4455555555555555555555555542 1 2233333333444455555555555555443322 111
Q ss_pred --chhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 906 --SANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 906 --~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
.-...--+..|.+.|++..|++.+...
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 011223456666666666666655544
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00021 Score=74.99 Aligned_cols=411 Identities=12% Similarity=0.049 Sum_probs=212.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchh-HHHHHHHHH
Q 038364 500 WNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP-NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLY-VGTSLMDMY 577 (1076)
Q Consensus 500 y~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~-v~~aLi~~y 577 (1076)
+++.+..+.+..++++|++++..-.++. | +...++.+-.++....++..|...++++-..-.+.... .| -...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--QAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--HHHHH
Confidence 3344444444445555555544444433 3 33333344444444555555555554444332221111 11 11234
Q ss_pred HhCCCHHHHHHHHhhcCCC-CHhHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHH
Q 038364 578 VKNDCLQNAQEVFDNMKNR-NIVAWNSLIS--GYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 578 ~k~g~~~~A~~lf~~m~~~-d~~~~n~lI~--~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~ 654 (1076)
.+.+.+.+|.++...|.+. +...-..-+. ..-..+++..+..++++...+| +..+.+.......+.|+.++|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 4567778888888887763 2221111111 2234677777888887765433 44555555555678999999999
Q ss_pred HHHHhHh-cCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhH-HHHHHHHhcCCCchhHHHHHHHHHHc
Q 038364 655 IIHHMKN-SGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTM-SSLLQTCGGLGLLQNGKEIHCLCLKN 732 (1076)
Q Consensus 655 lf~~m~~-~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~-~~lL~a~~~~g~~~~a~~i~~~~~~~ 732 (1076)
-|+...+ .|.. ....||.-+ +..+.|+.+.|+++..++.+.|++-.+..= ...... .....+..-..++...+
T Consensus 166 kFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal-- 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL-- 240 (459)
T ss_pred HHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH--
Confidence 9999887 4444 456677554 445678899999999999888775322110 000000 00000111111111111
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 038364 733 GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK-----TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITF 807 (1076)
Q Consensus 733 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~ 807 (1076)
+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...|.-.- ..+++.+..+-+.-+.+.+- -...||
T Consensus 241 -----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETF 313 (459)
T KOG4340|consen 241 -----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETF 313 (459)
T ss_pred -----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHH
Confidence 123344445677899999999999999854 677775543222 23445555555555555422 234689
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCCcccHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHH
Q 038364 808 TALLAACKNSGLVEEGWKYFDSMSTDYNI-IPTIEHYSCMVDLLG-KAGYLDEAWDFIRTMPFKPDATIWGALLGS-CRI 884 (1076)
Q Consensus 808 ~~ll~a~~~~g~~~eA~~~~~~m~~~~g~-~p~~~~y~~li~~l~-r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a-~~~ 884 (1076)
..++-.|++..-++.|..++.+-... -. -.+...|+ +++++. -.-..++|++-++.+...--...-...+.. -.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r 391 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEAR 391 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876542110 00 01122222 334433 334556666555443100000000000111 112
Q ss_pred cCCchHH----HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 885 HGHLEYA----EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 885 ~g~~e~A----~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
+.+-+++ ++-+++.+++- .......+++|.+..++..++++|+...+
T Consensus 392 ~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 392 HNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred hcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2222222 23333333321 12344556778888888899998887644
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.36 E-value=0.00029 Score=75.44 Aligned_cols=207 Identities=16% Similarity=0.148 Sum_probs=136.3
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCccchh-hhhhhhhhcCC
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLI---SGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWN-SLVSGYSIWGQ 648 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI---~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~-~Li~~y~k~g~ 648 (1076)
|-..+.-.|++.+|..-|....+-|+..|-++- ..|...|+..-|+.=|....+. +||-..-. .-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 445556678888898888888887777776654 4677788888888888777765 56643221 11234568899
Q ss_pred hhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHH
Q 038364 649 SKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCL 728 (1076)
Q Consensus 649 ~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~ 728 (1076)
+++|..=|+...++. |+..+ ...++.+ +.+.+++ ......+..+...|+...+......
T Consensus 122 le~A~~DF~~vl~~~--~s~~~---~~eaqsk-------l~~~~e~---------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHE--PSNGL---VLEAQSK-------LALIQEH---------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred HHHHHHHHHHHHhcC--CCcch---hHHHHHH-------HHhHHHH---------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 999999998887752 22110 0011111 1111111 1223344455667888888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhc---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 038364 729 CLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKS---ANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI 805 (1076)
Q Consensus 729 ~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m---~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~ 805 (1076)
+++. ..+|...+..-...|...|+...|+.-.+.. ...+....--+-..+-.-|+.+.++...++-++ +.||.-
T Consensus 181 llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 8774 3467888888888888888888887665543 345556666666777788888888888888777 678874
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.30 E-value=6.8e-07 Score=63.98 Aligned_cols=32 Identities=34% Similarity=0.606 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 663 GIYPNVVTWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 663 gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.29 E-value=0.023 Score=74.27 Aligned_cols=368 Identities=14% Similarity=-0.010 Sum_probs=170.0
Q ss_pred HHHHHhCCChHHHHHHHHhcCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 038364 438 ISMYSRNNKLELATRVFDSMKDHNLSS--WNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQN 515 (1076)
Q Consensus 438 i~~y~k~g~~~~A~~lf~~m~~~d~~s--~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~ 515 (1076)
...|...|++.+|..........+... ...........|+.+.+.+.+..+.......+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344556677776666665554432221 111122344567777777777666322111122223334445566778888
Q ss_pred HHHHHHHHHhcCCCCC---cccHH-----HHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038364 516 VLTLLRGMQSLGFRPN---GSSVS-----VVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQ 587 (1076)
Q Consensus 516 Al~l~~~m~~~gi~pd---~~t~~-----~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~ 587 (1076)
|..++......--..+ ..... ..-..+...|+++.+...+....+.-...+...
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------ 489 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS------------------ 489 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH------------------
Confidence 8887776644210000 00000 001112234444444444444333211101000
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---C--CccchhhhhhhhhhcCChhHHHHHHHHhHh-
Q 038364 588 EVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK---P--DLVSWNSLVSGYSIWGQSKEALVIIHHMKN- 661 (1076)
Q Consensus 588 ~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~---p--d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~- 661 (1076)
-...++.+...+...|++++|...+.+.....-. + ...++..+...+...|++++|...+++..+
T Consensus 490 ---------~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 490 ---------RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 0012233334444455555555555554322100 0 011223334445555666666665555433
Q ss_pred ---cCCC--C-chHHHHHHHHHHhcCCChhHHHHHHHHHhhc--CCCCC--hhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 038364 662 ---SGIY--P-NVVTWTSLISGSLQNENYRESLKFFIQMQQE--DIKPN--STTMSSLLQTCGGLGLLQNGKEIHCLCLK 731 (1076)
Q Consensus 662 ---~gi~--p-d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~--gi~pd--~~t~~~lL~a~~~~g~~~~a~~i~~~~~~ 731 (1076)
.+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+.......|+.+.|...+..+..
T Consensus 561 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 561 IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 0 1122333444455556666666666655431 11111 12222233344556666666666555433
Q ss_pred cCCCC-Chh-----hHHHHHHHHhhcCCHHHHHHHHHhcCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 038364 732 NGFIK-DAY-----VATGLIDMYSKSGNLKSAREVFRKSANKTL-------ASWNCMIMGFAIYGNGKEAILLFHELLET 798 (1076)
Q Consensus 732 ~g~~~-d~~-----~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~-------~s~n~li~~~~~~g~~~~Al~l~~~M~~~ 798 (1076)
..-.. ... ........+...|+.+.|.+.+.....+.. ..+..+..++...|+.++|..++++....
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 641 LLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21000 000 001122344557788888877766543221 11344566677788888888877776542
Q ss_pred ----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 799 ----GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 799 ----g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
|..++. .+...+..++...|+.++|...+.+..+
T Consensus 721 ~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 721 ARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333322 2344445556777777777777777654
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.29 E-value=0.00058 Score=78.64 Aligned_cols=194 Identities=12% Similarity=-0.063 Sum_probs=93.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHh
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGF-QPDA--ITFTALLAACKN 816 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd~--~t~~~ll~a~~~ 816 (1076)
.+...+...|++++|.+.+++..+ .+...+..+...|...|+.++|+.++++.....- .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 344455555555555555554432 2334445555555555666666655555554211 1221 123334444555
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCcc-c--HHHHHHHHHhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcC
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPTIE-H--YSCMVDLLGKAGYLDEAWDF---IRT---M-PFKPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~~~-~--y~~li~~l~r~G~l~eA~~l---~~~---m-~~~pd~~~~~~Ll~a~~~~g 886 (1076)
.|+.++|..++++........+... . ...+...+...|..+.+.++ ... . +.............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 5666666666655432111011110 0 00222222333322222222 111 0 00011112223445556667
Q ss_pred CchHHHHHHHHHhcCC-C--------CCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 887 HLEYAEIASRRLFKLE-P--------CNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~-P--------~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+.+.|...++.+.... . .......+.+-++.+.|++++|.+.+....+.+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7777777776654421 1 123456778888899999999999998876544
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.25 E-value=1.6e-05 Score=87.81 Aligned_cols=245 Identities=13% Similarity=0.066 Sum_probs=159.2
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH
Q 038364 677 GSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKS 756 (1076)
Q Consensus 677 ~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~ 756 (1076)
-+.-.|++..++.-.+ .....-..+.....-+.+++...|..+. +...+.+. -.|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3455688888876555 2221112233445556677777776543 33333332 25555555555555544456666
Q ss_pred HHHHHHhcC-CCCh---HHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 757 AREVFRKSA-NKTL---ASWNCM-IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 757 A~~vf~~m~-~~d~---~s~n~l-i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
+..-+++.. +... .++..+ ...+...|++++|++++++- .+.......+..+.+.+++|.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665543 2211 222222 24455679999999988652 334455566778899999999999999997
Q ss_pred hcCCCCCCcc---cHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 832 TDYNIIPTIE---HYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 832 ~~~g~~p~~~---~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+ +..|.. ...+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|+++
T Consensus 159 ~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 159 Q---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp C---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred h---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 4 344432 2234444444445799999999998 3557888889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCh-HHHHHHHHHHHhC
Q 038364 907 ANYNLMMNLLAMSNRW-EDVERLRHSMDEV 935 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~-~eA~~~~~~m~~~ 935 (1076)
.+...++-+..-.|+. +++.+.+.+++..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999998 6788899988654
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.22 E-value=1.4e-06 Score=62.43 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCCCChHHHHHHHHHHhcCCChHHHHHHHhhcC
Q 038364 324 GFDFDVHLKCALMNFYGKCRDVESANKLFSEVS 356 (1076)
Q Consensus 324 g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~ 356 (1076)
|+.||+++||+||++|+|.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777764
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=7.4e-05 Score=80.67 Aligned_cols=180 Identities=11% Similarity=0.014 Sum_probs=119.8
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---Ch---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----
Q 038364 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSANK---TL---ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI---- 805 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~---~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~---- 805 (1076)
.....+..+...|.+.|++++|...|++.... +. ..|..+...+.+.|++++|+..++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 34556667777888888888888888876542 22 3566777888888888888888888876 344332
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHhhhcCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 038364 806 TFTALLAACKNS--------GLVEEGWKYFDSMSTDYNIIPTIE-HYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWG 876 (1076)
Q Consensus 806 t~~~ll~a~~~~--------g~~~eA~~~~~~m~~~~g~~p~~~-~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~ 876 (1076)
++..+..++... |+.++|.+.|+.+.+. .|+.. .+..+.. .+....... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~----~~~~~~~~~-----------~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKR----MDYLRNRLA-----------GKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHH----HHHHHHHHH-----------HHHH
Confidence 233333344433 6677788888777654 34322 1211111 111111100 0122
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 877 ALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 877 ~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.+...+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|.+.++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566888999999999999999987765 478999999999999999999999988543
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.17 E-value=0.0034 Score=72.26 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHhhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHH
Q 038364 580 NDCLQNAQEVFDNMKN--R-NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVII 656 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~--~-d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf 656 (1076)
.+..+.+.+.++.... + +...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|...+
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455555555554222 1 22333445567778888888888888887764 223455677777888888888888888
Q ss_pred HHhHhcCC-CCch--HHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 038364 657 HHMKNSGI-YPNV--VTWTSLISGSLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 657 ~~m~~~gi-~pd~--~ty~~LI~~~~~~g~~~eAl~l~~~m~~ 696 (1076)
++..+... .|+. ..|..+...+...|++++|..++++...
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 87765321 1222 3455677888888999999999888753
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=2.9e-05 Score=88.73 Aligned_cols=220 Identities=15% Similarity=0.092 Sum_probs=146.7
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH
Q 038364 678 SLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKS 756 (1076)
Q Consensus 678 ~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~ 756 (1076)
+.++|++.+|.-.|+..+.. .| +...|.-|-..-+..++-..|...+.+.++ ++|
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP-------------------- 350 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDP-------------------- 350 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCC--------------------
Confidence 45666666666666666543 23 334454444444444444445555444444 232
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 757 AREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQ--------PDAITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 757 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~--------Pd~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
.|....-+|...|...|.-.+|+..++.-+....+ ++..+-.. ....+........++|-
T Consensus 351 ----------~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fL 418 (579)
T KOG1125|consen 351 ----------TNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFL 418 (579)
T ss_pred ----------ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHH
Confidence 23334444445555555555565555555432100 00000000 11122223445566777
Q ss_pred HhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 829 SMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 829 ~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+....+..+|++++.+|.-+|.-.|.++.|.+.|+.. ..+| |..+||-|........+.++|+.+|.+++++.|...
T Consensus 419 eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV 498 (579)
T KOG1125|consen 419 EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV 498 (579)
T ss_pred HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence 77666677788999999999999999999999999987 5666 566999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
.+.+.|+-.|...|-++||.+.+-...
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999887754
No 107
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00034 Score=71.61 Aligned_cols=195 Identities=17% Similarity=0.062 Sum_probs=136.5
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHc
Q 038364 707 SSLLQTCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIY 782 (1076)
Q Consensus 707 ~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~ 782 (1076)
..|--.|...|+...|+.-++.+++. +| +..++..+...|.+.|..+.|.+-|++.. .++-...|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 33444556666666666666666663 33 34566777777888888888888887644 34556677777788888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAW 860 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~ 860 (1076)
|++++|...|++....-.-|.. .||..+.-.-.+.|+.+.|.++|++..+ ..|+ ......|.+...+.|++.+|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888764333332 4666666566678888888888888764 3444 456677888888888888888
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 861 DFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 861 ~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+++.. ...+...+.--.+..-...||.+.+-+.-.++...-|...
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 888876 2346666665566667778888888888777777778654
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.00041 Score=72.93 Aligned_cols=306 Identities=13% Similarity=0.120 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHH-HHHHh
Q 038364 601 WNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSL-ISGSL 679 (1076)
Q Consensus 601 ~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~L-I~~~~ 679 (1076)
+++.+..+.+..++++|++++..-.+.. ..+....+.|...|-+..++..|...++++... .|...-|... ...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5566666777888888888887766553 115566677777888888888888888887653 4555555432 34566
Q ss_pred cCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHH--hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH
Q 038364 680 QNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTC--GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSA 757 (1076)
Q Consensus 680 ~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~--~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A 757 (1076)
+++.+.+|+.+...|.+. |+...-..-+.+. -..+++..++.+.++.-. +.+..+.+...-...+.|+.+.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHH
Confidence 778888888888877542 2222111112221 133455555544443321 12233333344444566666666
Q ss_pred HHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 758 REVFRKSAN----KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 758 ~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
.+-|+...+ .....||.-+. .-+.|+.+.|+++..+..+.|++-... ++ -|..-++..+ +..
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv-rsv--- 229 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV-RSV--- 229 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch-hcc---
Confidence 666665443 12344543332 334455666666666666655532211 00 0111111110 000
Q ss_pred CCCCCCcccHHHHH-------HHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 834 YNIIPTIEHYSCMV-------DLLGKAGYLDEAWDFIRTMP----FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 834 ~g~~p~~~~y~~li-------~~l~r~G~l~eA~~l~~~m~----~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
| .|-..|-+.++ ..+.+.|+.+.|.+-+..|| .+.|++|...+.-. -..++.-.+.+-+.-+++++
T Consensus 230 -g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 230 -G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred -c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 0 01112233333 44578999999999999996 34577877655322 23466677777778888999
Q ss_pred CCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 903 PCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 903 P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
|-.++++..+.-+|++..-++-|..++.+-
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 988899999999999999999999888653
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.09 E-value=5.9e-05 Score=74.56 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=82.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 038364 790 LLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-P 867 (1076)
Q Consensus 790 ~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~ 867 (1076)
.+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 45654 33445556777777777777777654 334 3556677777777777777777777776 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 868 F-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 868 ~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
. +.+...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 2 3355677777777778888888888888888888888777777766554
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.08 E-value=0.0001 Score=77.00 Aligned_cols=147 Identities=10% Similarity=0.079 Sum_probs=108.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCC
Q 038364 776 IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY 855 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~ 855 (1076)
+..|.+.|+++......+.+.. |. . .+...++.+++...++...+. -..+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 3566677776665444332221 11 0 112245667777666666542 23457788889999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCC--chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 038364 856 LDEAWDFIRTM-PFKP-DATIWGALLGS-CRIHGH--LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRH 930 (1076)
Q Consensus 856 l~eA~~l~~~m-~~~p-d~~~~~~Ll~a-~~~~g~--~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~ 930 (1076)
+++|...+++. ...| +..+|..+..+ +...|+ .++|..+++++++.+|+++.++..|+..+.+.|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 3445 56677777776 467777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 038364 931 SMDEVG 936 (1076)
Q Consensus 931 ~m~~~g 936 (1076)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997655
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.06 E-value=0.00028 Score=87.59 Aligned_cols=197 Identities=13% Similarity=0.146 Sum_probs=165.5
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSANK--------TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITF 807 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~ 807 (1076)
....|-..+......++++.|++++++.... -...|.++++.-...|.-+...++|+++.+. -|. ..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence 3566777778888899999999999876531 2358999999999999888899999999883 344 457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHH
Q 038364 808 TALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD---ATIWGALLGSCR 883 (1076)
Q Consensus 808 ~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd---~~~~~~Ll~a~~ 883 (1076)
..|+.-|.+.+..++|-++++.|.++++ .....|..+++.+.+...-++|.+++++. ..-|. .....-....-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8888889999999999999999999877 56778999999999999999999999875 33333 335556667778
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
++||.+.|+.+|+.++.-.|.....|..++++=.+.|..+.+..+|++..+.++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999877664
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.01 Score=67.99 Aligned_cols=232 Identities=13% Similarity=0.082 Sum_probs=137.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHH-HHHHHHhcCCCchhHHHHHHHHHHcCCCCC------hhhHHHHHH
Q 038364 674 LISGSLQNENYRESLKFFIQMQQEDIKPNSTTMS-SLLQTCGGLGLLQNGKEIHCLCLKNGFIKD------AYVATGLID 746 (1076)
Q Consensus 674 LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~-~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d------~~~~~~Li~ 746 (1076)
+..+.-+..+++.|++-+....+. . ...+|. ..-.++...|...+....-...++.|.+.- ......+.+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el--~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALEL--A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhH--h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 444444455555555555555442 2 222322 222334444444444333333333332210 011222555
Q ss_pred HHhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHH
Q 038364 747 MYSKSGNLKSAREVFRKSAN--KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGLVEEG 823 (1076)
Q Consensus 747 ~y~k~G~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA 823 (1076)
.|.+.++++.|...|.+... ++. ....+....++++...+...- +.|+... ...=-+.+.+.|++.+|
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 78888999999998887442 121 112233344555555555444 4555422 12224457788999999
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 824 WKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
.+.+.++... -+-|...|....-+|.+.|.+.+|++=.+.. ...|+.. .|.-=..++..-.+++.|...|++.++.
T Consensus 378 v~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998864 2334678888888999999998888766554 3445433 5555556667778999999999999999
Q ss_pred CCCCchhHHHHHHHHHHc
Q 038364 902 EPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 902 ~P~~~~~y~~L~~~y~~~ 919 (1076)
+|++.+.-.-+.+.+...
T Consensus 456 dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 999877766666666543
No 113
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.98 E-value=0.045 Score=61.54 Aligned_cols=436 Identities=14% Similarity=0.136 Sum_probs=215.6
Q ss_pred hCCChHHHHHHHHhcCCC---C------hhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcC
Q 038364 443 RNNKLELATRVFDSMKDH---N------LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGH--FTHG 511 (1076)
Q Consensus 443 k~g~~~~A~~lf~~m~~~---d------~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~--~~~g 511 (1076)
|.+++.+|.++|.++-+. + .+.-+.+|++|..++ .+.....+.+..+.- | ...|-.+..++ -+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhh
Confidence 455566666666555221 1 123455666665543 333333333333321 1 23344444433 3556
Q ss_pred ChhhHHHHHHHHHhc--CCCC------------CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCC----CCchhHHHHH
Q 038364 512 SYQNVLTLLRGMQSL--GFRP------------NGSSVSVVLQAVTELRLLKYGRESHGYILRNGL----DYDLYVGTSL 573 (1076)
Q Consensus 512 ~~~~Al~l~~~m~~~--gi~p------------d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~----~~d~~v~~aL 573 (1076)
.+.+|++.+....+. +-+| |-.-=..........|.+.+|+.++..++..=+ ..+...|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777776665544 2221 111112344556788888899888887776544 4788888888
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHH---------HHHHHHHHHHc-CCCCCccchhhhhhhh
Q 038364 574 MDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVN---------AKKMLNQMEEE-EIKPDLVSWNSLVSGY 643 (1076)
Q Consensus 574 i~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~---------A~~lf~~M~~~-g~~pd~~t~~~Li~~y 643 (1076)
+-||++.--++.-. .+...=..-|--||..|.+.=+.-+ +.+++..+.+. -+.|-.
T Consensus 174 vlmlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e---------- 239 (549)
T PF07079_consen 174 VLMLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE---------- 239 (549)
T ss_pred HHHHhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh----------
Confidence 88887753332211 1111112345566666655422221 12222222221 011111
Q ss_pred hhcCChhHHHHHHHHhHhcCCCCchH-HHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC----ChhhHHHHHHHHhcCCC
Q 038364 644 SIWGQSKEALVIIHHMKNSGIYPNVV-TWTSLISGSLQNENYRESLKFFIQMQQEDIKP----NSTTMSSLLQTCGGLGL 718 (1076)
Q Consensus 644 ~k~g~~~~A~~lf~~m~~~gi~pd~~-ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p----d~~t~~~lL~a~~~~g~ 718 (1076)
+..--.++++.-...-+.|+-. .-..|+..+.+ +.+++..+-+.+....+.+ =..+|..+|+.+.+.++
T Consensus 240 ----~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 240 ----RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred ----hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111112222222333444422 22334444444 4555555555544332222 13468888888888888
Q ss_pred chhHHHHHHHHHHcCCCCChhhHH-------HHHHHHhhc----CCHHHHHHHHHhcCCCChH-----HHHH-HHHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVAT-------GLIDMYSKS----GNLKSAREVFRKSANKTLA-----SWNC-MIMGFAI 781 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~-------~Li~~y~k~----G~~~~A~~vf~~m~~~d~~-----s~n~-li~~~~~ 781 (1076)
..+|.+.+..+.- ++|+..+.. +|.++.+.- -++.+=..+++.....|+. .|-. -..-+-+
T Consensus 314 T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 314 TEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 8888888877765 555544322 222332211 0111112222222222221 1100 0111222
Q ss_pred cCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038364 782 YGN-GKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAW 860 (1076)
Q Consensus 782 ~g~-~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~ 860 (1076)
.|. -++|+++++...+ +.|...-.-..+--+ ..+.+.++... .... ++=+-+
T Consensus 392 ~g~~dekalnLLk~il~--ft~yD~ec~n~v~~f--------vKq~Y~qaLs~-------~~~~----------rLlkLe 444 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQ--FTNYDIECENIVFLF--------VKQAYKQALSM-------HAIP----------RLLKLE 444 (549)
T ss_pred cCCccHHHHHHHHHHHH--hccccHHHHHHHHHH--------HHHHHHHHHhh-------hhHH----------HHHHHH
Confidence 333 4455555555554 333322111111000 11112222111 0000 112234
Q ss_pred HHHHhCCCCC----CHHHHHHHHHH--HHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 861 DFIRTMPFKP----DATIWGALLGS--CRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 861 ~l~~~m~~~p----d~~~~~~Ll~a--~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
.++++.++.| +...-|-|.+| ...+|++.++.-...-+.++.| .+.+|.+++-.+....+++||.+.+.++
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5566666544 34466667666 5689999999999999999999 7899999999999999999999999887
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.91 E-value=8.7e-05 Score=73.35 Aligned_cols=95 Identities=11% Similarity=-0.114 Sum_probs=85.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
.+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4566788999999999999999986 3444 6779999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 038364 920 NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 920 G~~~eA~~~~~~m~~~g 936 (1076)
|+.++|.+.+++..+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999986544
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.91 E-value=0.00018 Score=70.44 Aligned_cols=118 Identities=8% Similarity=0.001 Sum_probs=97.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
.+..-.+...+...|++++|.++|+-. ...| +..-|..|...|...|++++|+.+|.++..++|+++..|..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445556777888999999999999987 3444 56689999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHH
Q 038364 918 MSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMK 980 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~ 980 (1076)
..|+.++|.+-|+...... ..+|+...|.+.++.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999874321 135666677777776666554
No 116
>PLN02789 farnesyltranstransferase
Probab=97.88 E-value=0.0021 Score=72.21 Aligned_cols=187 Identities=9% Similarity=0.084 Sum_probs=118.8
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038364 742 TGLIDMYSKSG-NLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNG--KEAILLFHELLETGFQPD-AITFTALLAAC 814 (1076)
Q Consensus 742 ~~Li~~y~k~G-~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~--~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~ 814 (1076)
+....++.+.| +++++...++++.+ ++...|+-....+.+.|+. ++++.++++|.+ ..|. ...|.....++
T Consensus 75 ~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l 152 (320)
T PLN02789 75 HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVL 152 (320)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 33333444445 45667766665543 3444566544444445542 566777777776 3443 35676666677
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKA---GY----LDEAWDFIRTM-PFKP-DATIWGALLGSCRIH 885 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~---G~----l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~ 885 (1076)
.+.|+++++.+.++++.+. . .-+...|+....++.+. |. .+++.++.+++ ...| |...|+-+.+.+..+
T Consensus 153 ~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 153 RTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 7777788888888777653 1 22344555554444443 22 24566666444 4444 566899998888774
Q ss_pred ----CCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC------------------ChHHHHHHHHHH
Q 038364 886 ----GHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN------------------RWEDVERLRHSM 932 (1076)
Q Consensus 886 ----g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G------------------~~~eA~~~~~~m 932 (1076)
++..+|...+.+++..+|+++.+...|+++|+... ..++|.++.+.+
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred CcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 34567889999999999999999999999998743 235677777777
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.88 E-value=0.0014 Score=81.70 Aligned_cols=192 Identities=17% Similarity=0.196 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-----hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHH
Q 038364 668 VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-----STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 668 ~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-----~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
...|-..|.-..+.++.++|.+++++.+.. +.+. ...|.++++.-...|.-+...++|+++.+. ...-.+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 345555666666666666666666665532 2221 124444444444444455555555555552 22234455
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHH-HHHHHh
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSANK---TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD--AITFTAL-LAACKN 816 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd--~~t~~~l-l~a~~~ 816 (1076)
.|...|.+.++.++|.++++.|.++ ....|...+..+.++.+.+.|..++++.++. -|- ++-+.+- ...-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 5666666666666666666665532 3345666666666666666666666655552 232 2222111 111234
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
.|+.++|+.+|+.....| +-....|+.+|++=.++|..+.++.+|++.
T Consensus 1613 ~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred cCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 455555555555554432 122445555555555555555555555553
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=2.2e-05 Score=56.44 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 038364 362 LLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAIS 396 (1076)
Q Consensus 362 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~ 396 (1076)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999973
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.83 E-value=0.00065 Score=79.81 Aligned_cols=221 Identities=17% Similarity=0.186 Sum_probs=140.7
Q ss_pred CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhh
Q 038364 562 GLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVS 641 (1076)
Q Consensus 562 g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~ 641 (1076)
+++|--..-..+...+.++|...+|..+|++.. .|--.|..|+..|+..+|..+..+-.+. +||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 344555556678889999999999999999864 6888899999999999999998888773 788888888888
Q ss_pred hhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchh
Q 038364 642 GYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQN 721 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~ 721 (1076)
..-...-++.|+++++....+ .-..+.....++++++++.+.|+.-.+ +.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~np-------------------- 516 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INP-------------------- 516 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCc--------------------
Confidence 877777788888888765321 101111112235666666666655432 111
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 038364 722 GKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA--NK-TLASWNCMIMGFAIYGNGKEAILLFHELLET 798 (1076)
Q Consensus 722 a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~-d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~ 798 (1076)
.-..+|-.+.-++.++++++.|.+.|..-. +| +..+||.+-.+|.+.++-.+|...+++..+.
T Consensus 517 --------------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 517 --------------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred --------------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 122334444455556666666666665543 23 3356777777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 799 GFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 799 g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
+..|-.+ |...+-.-.+.|.+++|.+.+.++...
T Consensus 583 n~~~w~i-WENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 583 NYQHWQI-WENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCCCCee-eechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5333222 222222335566777777766666543
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00062 Score=71.28 Aligned_cols=135 Identities=18% Similarity=0.140 Sum_probs=107.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 038364 800 FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGA 877 (1076)
Q Consensus 800 ~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~ 877 (1076)
..|+......+-.++...|+-+.+..+...... ...-+.+.....+....+.|++.+|...+.+. +-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355443334445567777887877777666543 22333445556888899999999999999987 45678889999
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+..+|-+.|+.+.|...+.+++++.|+++..++.|+..|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999998886554
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.82 E-value=0.00063 Score=73.38 Aligned_cols=179 Identities=15% Similarity=0.047 Sum_probs=126.9
Q ss_pred ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC----hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC---hH---H
Q 038364 702 NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD----AYVATGLIDMYSKSGNLKSAREVFRKSANKT---LA---S 771 (1076)
Q Consensus 702 d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d----~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d---~~---s 771 (1076)
....+..+...+...|+++.|...++.+++. .|+ ...+..+...|.+.|++++|...++++.+.+ .. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556777778888999999999999998874 333 2456778999999999999999999886422 22 4
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCccc
Q 038364 772 WNCMIMGFAIY--------GNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEH 842 (1076)
Q Consensus 772 ~n~li~~~~~~--------g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~ 842 (1076)
|..+..++... |+.++|++.|+++.+ ..|+.. ....+... +.... .. . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~----~~~~~------~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRM----DYLRN------RL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHH----HHHHH------HH-H--------HH
Confidence 55556666654 788999999999998 466653 22221111 00000 00 0 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM----PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m----~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
...+.+.|.+.|+.++|...+++. +..| ....|..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235677889999999999988876 2223 346888999999999999999998888776555
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=0.00039 Score=81.65 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=133.4
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 734 FIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 734 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
+.|-...-..+.+.+.++|-..+|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4455555566778888888888888888874 4677788888888888888888777776 47788888887777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A 891 (1076)
......++.|+++++....+ .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777778888887765432 1111222233467777777777663 3434 344777777777777778888
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.++|.....++|++.+.++.++..|.+.|+-.+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 888888778888887788888888888877777777777775544
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.78 E-value=0.0011 Score=81.81 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=138.2
Q ss_pred hHHHHHHHHhcCCCchhH-HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH----HHHHHhcCCCChHHHHHHHHHH
Q 038364 705 TMSSLLQTCGGLGLLQNG-KEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSA----REVFRKSANKTLASWNCMIMGF 779 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a-~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A----~~vf~~m~~~d~~s~n~li~~~ 779 (1076)
.+..+=.+.+..|..+++ .+++.++.+ ++...++.....++ ..+-++- ..++..+-.|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRY-PHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 333333455666666554 667776655 33333332222222 2222221 13567788888999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHH
Q 038364 780 AIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~ 857 (1076)
.+.|+.++|+.+++...+ +.||.. .+..+...+.+.+.+++|....++... ..|+ ..+...+..++.+.|+.+
T Consensus 97 ~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred HHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchH
Confidence 999999999999999998 789986 566677789999999999999998864 4565 567788889999999999
Q ss_pred HHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 858 EAWDFIRTMP-FKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 858 eA~~l~~~m~-~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
+|.++|++.- ..|+ ..+|.++..++...|+.++|..+|+++++...+-...|+
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999999973 3444 679999999999999999999999999988765544444
No 124
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.75 E-value=4.1e-05 Score=55.05 Aligned_cols=35 Identities=37% Similarity=0.692 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL 633 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~ 633 (1076)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888874
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.72 E-value=0.0026 Score=72.10 Aligned_cols=144 Identities=17% Similarity=0.125 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLA-ACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVD 848 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~-a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~ 848 (1076)
.|-...-.+...|+.++|+..++.+.. -.||...|..+.. -+...++.++|.+.++.+.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 333344445567888899999998887 4778777666555 47888999999999988875 3566 455667788
Q ss_pred HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
+|.+.|+..+|..+++.. ..+-|+..|..|..+|...|+..++..+. +..|...|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 899999999999998886 34567889999999999999988877653 56677889999999
Q ss_pred HHHHHHHhCC
Q 038364 927 RLRHSMDEVG 936 (1076)
Q Consensus 927 ~~~~~m~~~g 936 (1076)
......+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9998887764
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.72 E-value=0.0057 Score=69.39 Aligned_cols=176 Identities=14% Similarity=0.059 Sum_probs=128.6
Q ss_pred CCHHHHHHHHHhcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038364 752 GNLKSAREVFRKSANK------TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~~------d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
.++.+++..-+.++.. +...+...+.+.........+..++.+-.+. .-...-|..-+ .....|..++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHH
Confidence 3566666666666642 3344455555444333333333333222221 11122233322 3556799999999
Q ss_pred HHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 826 YFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
.++.+... .|+ +..+....+.+.+.++.++|.+.++++ ...|+ ...|-++..++.+.|+..+|+..+.....-+
T Consensus 328 ~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 99998764 454 566678889999999999999999997 45676 6788899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 903 PCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 903 P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
|+++..|..|+..|...|+-.+|..-+.++.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999999999888873
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0026 Score=73.26 Aligned_cols=215 Identities=15% Similarity=0.091 Sum_probs=163.2
Q ss_pred HHhCCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 038364 441 YSRNNKLELATRVFDSMKDH---NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVL 517 (1076)
Q Consensus 441 y~k~g~~~~A~~lf~~m~~~---d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al 517 (1076)
+.+.|++.+|.-.|+..... ++..|--|-...+.+++-..|+..+++-.+.... |....-.|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 56788899999999887543 4568999999999999999999999999888766 7888888889999999999999
Q ss_pred HHHHHHHhcCCC--------CCcccHHHHHHHHHhcCchHHHHHHH-HHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038364 518 TLLRGMQSLGFR--------PNGSSVSVVLQAVTELRLLKYGRESH-GYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQE 588 (1076)
Q Consensus 518 ~l~~~m~~~gi~--------pd~~t~~~ll~a~~~~g~~~~a~~i~-~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~ 588 (1076)
+.|+.......+ ++..+-.. +.......+....++| +.....+...|..+...|--.|--.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988654310 01100000 1111222233344444 444455666888889999999999999999999
Q ss_pred HHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc-chhhhhhhhhhcCChhHHHHHHHHhH
Q 038364 589 VFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLV-SWNSLVSGYSIWGQSKEALVIIHHMK 660 (1076)
Q Consensus 589 lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~-t~~~Li~~y~k~g~~~~A~~lf~~m~ 660 (1076)
.|+.... .|-..||-|-..++...+.++|+.-|++..+. +|+-+ ..-.|.-.|...|.+++|.+.|-+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9998765 47789999999999999999999999999875 56643 44456677889999999998887655
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.68 E-value=0.0026 Score=66.41 Aligned_cols=154 Identities=11% Similarity=0.126 Sum_probs=112.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEG 823 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA 823 (1076)
-+-+|.+.|+++.+....+.+..+. ..+...++.++++..+++..+.. ..|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456888888877655543332211 11223667788888888877732 34445788888889999999999
Q ss_pred HHHHHHhhhcCCCCC-CcccHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038364 824 WKYFDSMSTDYNIIP-TIEHYSCMVDLL-GKAGY--LDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRR 897 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p-~~~~y~~li~~l-~r~G~--l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~ 897 (1076)
...|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..+..++...|++++|+..+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998865 345 466777888764 67787 59999999987 3445 566888888889999999999999999
Q ss_pred HhcCCCCCchhH
Q 038364 898 LFKLEPCNSANY 909 (1076)
Q Consensus 898 l~~l~P~~~~~y 909 (1076)
+++++|.+..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999988765444
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.68 E-value=0.0038 Score=77.10 Aligned_cols=193 Identities=11% Similarity=0.028 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHhcCCChhHHH-HHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHH--cCCCCChhhHHHH
Q 038364 668 VVTWTSLISGSLQNENYRESL-KFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLK--NGFIKDAYVATGL 744 (1076)
Q Consensus 668 ~~ty~~LI~~~~~~g~~~eAl-~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~--~g~~~d~~~~~~L 744 (1076)
....+.+=.+...-|..++|- ++..+..+ ++. .++.+..+.+.+-.+.. ..+..++..+..|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 92 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLE---RHAAVHKPAAALPELLDYVRRYPHTELFQVLV 92 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHH---HhhhhcchHhhHHHHHHHHHhccccHHHHHHH
Confidence 333444444566667777663 34444432 333 33444444333332221 1256678889999
Q ss_pred HHHHhhcCCHHHHHHHHHhcCC--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCH
Q 038364 745 IDMYSKSGNLKSAREVFRKSAN--K-TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTA-LLAACKNSGLV 820 (1076)
Q Consensus 745 i~~y~k~G~~~~A~~vf~~m~~--~-d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~-ll~a~~~~g~~ 820 (1076)
.......|++++|..+++...+ | +...+-.++..+.+.+++++|+..+++... ..|+..+... +..++.+.|..
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999998875 3 446778899999999999999999999998 6888876544 44568899999
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 038364 821 EEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALL 879 (1076)
Q Consensus 821 ~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll 879 (1076)
++|..+|+++... ..-+...+..+..++-+.|+.++|...|++. ...|...-|+.++
T Consensus 171 ~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 171 EQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999999999862 2233678889999999999999999999987 2345555555554
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.66 E-value=0.053 Score=58.69 Aligned_cols=224 Identities=8% Similarity=0.046 Sum_probs=113.7
Q ss_pred CCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 038364 681 NENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREV 760 (1076)
Q Consensus 681 ~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 760 (1076)
.|+...|++.+..+++. ...|...+..-..++...|++..|..=+..+-+.. ..+....--+...+...|+.+.+...
T Consensus 168 ~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred CCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHH
Confidence 44444444444444431 12233334344444445555554444444333321 12233333456666677777777766
Q ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-
Q 038364 761 FRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT- 839 (1076)
Q Consensus 761 f~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~- 839 (1076)
.++..+-|+..- .+|....+..+..+.++.|.+ ....+.+-++.+-.+...+ ..|.
T Consensus 246 iRECLKldpdHK----~Cf~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk---~ep~~ 302 (504)
T KOG0624|consen 246 IRECLKLDPDHK----LCFPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLK---NEPEE 302 (504)
T ss_pred HHHHHccCcchh----hHHHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHh---cCCcc
Confidence 666543222100 011111222333333333332 1122333333333333332 1233
Q ss_pred ----cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 840 ----IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 840 ----~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
...+..+-..+...|++-||+....+. .+.|| +.++.--..||.....++.|+.-|+++.+.+|+|..+
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~----- 377 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA----- 377 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH-----
Confidence 122333445566778888888777765 45666 5577777788888888999999999999999987432
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCcc
Q 038364 914 NLLAMSNRWEDVERLRHSMDEVGVKS 939 (1076)
Q Consensus 914 ~~y~~~G~~~eA~~~~~~m~~~g~~~ 939 (1076)
+.| .+.|.++.+....+..-|
T Consensus 378 ----reG-le~Akrlkkqs~kRDYYK 398 (504)
T KOG0624|consen 378 ----REG-LERAKRLKKQSGKRDYYK 398 (504)
T ss_pred ----HHH-HHHHHHHHHHhccchHHH
Confidence 222 356666666654444433
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.65 E-value=0.0004 Score=67.62 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=79.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345566777788888888888888776 3334 56678888888888999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999998886543
No 132
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.64 E-value=0.22 Score=57.35 Aligned_cols=413 Identities=13% Similarity=0.130 Sum_probs=226.3
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 038364 360 DDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLIS 439 (1076)
Q Consensus 360 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~ 439 (1076)
|+.+|+.||.-+-.+ ..+++.+.+++|... ++-....|..-+..-....+++..+.+|++.+..-+. ...|...++
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHHH
Confidence 777888888765544 778888888877632 2223445666677777777888888888877766544 444554444
Q ss_pred HHHh-CCChHHHH----HHHHh------cCCCChhHHHHHHH---------HHHhCCChHHHHHHHHHHHhCCCCC----
Q 038364 440 MYSR-NNKLELAT----RVFDS------MKDHNLSSWNSMIS---------SYTGLGYVDVAWSLFNKMNSSRIQP---- 495 (1076)
Q Consensus 440 ~y~k-~g~~~~A~----~lf~~------m~~~d~~s~n~lI~---------~~~~~g~~~~A~~lf~~M~~~g~~p---- 495 (1076)
---+ .|+...++ +.|+- |.-..-..|+..|. -|..+.+.+...+++.++...-+.-
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 2221 23333322 22222 22233345666553 3455556777778888877543221
Q ss_pred --ChhhHHHHHHHHH-------hcCChhhHHHHHHHHHh--cCCCCCcccHHHHHHHHHhcCchHHHHHH--HHHHHH--
Q 038364 496 --DIITWNCLLSGHF-------THGSYQNVLTLLRGMQS--LGFRPNGSSVSVVLQAVTELRLLKYGRES--HGYILR-- 560 (1076)
Q Consensus 496 --d~~ty~~Li~~~~-------~~g~~~~Al~l~~~m~~--~gi~pd~~t~~~ll~a~~~~g~~~~a~~i--~~~~~~-- 560 (1076)
|-.+|..=|+-.. +...+..|.+++++++. +|..-+..+ .-..|--++.+++ +...++
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHHH
Confidence 1122222222111 22355667777777653 343332222 0111222222222 221222
Q ss_pred --cCCC-Cch--------hHHHHHHHHHHhC-CCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCC-------hHHHHHHH
Q 038364 561 --NGLD-YDL--------YVGTSLMDMYVKN-DCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGL-------FVNAKKML 621 (1076)
Q Consensus 561 --~g~~-~d~--------~v~~aLi~~y~k~-g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~-------~~~A~~lf 621 (1076)
.++. .+. ++++-.+....-+ .-+-++-..+.+..+ .+...|+ -+++..++
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~-----------l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD-----------LLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH-----------HHHHhcccccchhhHHHHHHHH
Confidence 1121 110 1111111111000 001111111211111 1222222 34455555
Q ss_pred HHHHHcCCCCCccchhhhhhhhh---hcCChhHHHHHHHHhHhc-CCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 038364 622 NQMEEEEIKPDLVSWNSLVSGYS---IWGQSKEALVIIHHMKNS-GIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE 697 (1076)
Q Consensus 622 ~~M~~~g~~pd~~t~~~Li~~y~---k~g~~~~A~~lf~~m~~~-gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~ 697 (1076)
+.....-..-+.-+|..+.+-=- +....+.....++++... .+.|+ .+|-.++..-.+..-+..|..+|.+..+.
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~ 395 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED 395 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 55443322223333332221110 111244455566666542 23343 45777788888888899999999999998
Q ss_pred CCCC-ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC------ChH
Q 038364 698 DIKP-NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK------TLA 770 (1076)
Q Consensus 698 gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~------d~~ 770 (1076)
+..+ +.....+++.-++ .++.+.|..+|+.-++. +..++......++.+...++-..|+.+|++.... ...
T Consensus 396 ~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 396 KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence 8888 6677777777665 57788899998876664 4455566678899999999999999999987754 235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
.|..||.--..-|+...++++=+++..
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 899999999999999999998888765
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.61 E-value=0.0014 Score=74.91 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=97.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGL 819 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~ 819 (1076)
-..|+..+...++++.|.++|+++.+.++..+-.|+..+...++-.+|++++++..+. .|+. .....-...|...++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 3456666777889999999999998887777777888888888889999999998863 4433 344434444788899
Q ss_pred HHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038364 820 VEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMPF 868 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~~ 868 (1076)
.+.|.++.+++.+ ..|+ ..+|..|+..|.+.|++++|+-.++.+|+
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999988874 4666 45899999999999999999999988874
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.60 E-value=0.0009 Score=76.57 Aligned_cols=119 Identities=11% Similarity=0.048 Sum_probs=87.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcC
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g 886 (1076)
+|+..+...+++++|.++|+++.+. .|+ ....++..+...++-.+|.+++++. . .+.|...+.....-|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3444455566666666666666543 132 3444566666666666777766665 2 2335556665566688899
Q ss_pred CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 887 HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+++.|+.+++++.++.|++..+|..|+.+|.+.|++++|+-.++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999887
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.57 E-value=0.0053 Score=76.52 Aligned_cols=231 Identities=9% Similarity=0.041 Sum_probs=130.5
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchH-HHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVV-TWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTC 713 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~-ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~ 713 (1076)
.+..|+..|...+++++|.++.+...+. .|+.. .|-.+...+.+.++.+++..+ .++...
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~ 93 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhc
Confidence 4456666666677777777776655443 33322 222222244445544443333 222222
Q ss_pred hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHH
Q 038364 714 GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAIL 790 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~ 790 (1076)
....++.....+...+.+. ..+...+..|...|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|++
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 2233333333333344442 22334555677777777777777777776654 3455666666777766 7777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 038364 791 LFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMPFK 869 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~~~ 869 (1076)
++.+.... +....++.++.++|..+... .|+ ...+..+.... ....+..
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~ki------------~~~~~~~ 220 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERKV------------LGHREFT 220 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHHH------------Hhhhccc
Confidence 77666552 34445666666666666542 222 11111111111 1111222
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 870 PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
.-..+|--|-.-|+..++++.+..+++.+++.+|+|..+..-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 334455566677888899999999999999999999888888888876
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.57 E-value=0.00011 Score=52.62 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 038364 361 DLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKA 394 (1076)
Q Consensus 361 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p 394 (1076)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.52 E-value=0.00014 Score=52.06 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 038364 463 SSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQP 495 (1076)
Q Consensus 463 ~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~p 495 (1076)
.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666554
No 138
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.0065 Score=63.78 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=89.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G 854 (1076)
+-..+...|+.+.+..+..+.... ..-|..............|++.+|...|.+... .-.+|.+.|+.+.-.|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 344555555555555555543321 111222233345555666666666666666653 33445666666666666666
Q ss_pred CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 038364 855 YLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRH 930 (1076)
Q Consensus 855 ~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~ 930 (1076)
+.++|..-|.+. .+. -+..+.+.|.-.+...|+.+.|+.++.......+.++..-..|+-+....|++++|+++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666665554 222 2445566666666677777777777777766666666666677777777777777766554
No 139
>PLN02789 farnesyltranstransferase
Probab=97.50 E-value=0.037 Score=62.21 Aligned_cols=209 Identities=11% Similarity=0.032 Sum_probs=118.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 038364 364 WNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRT-IVKMLQACAKVG-AFHEGKQIHGYVLKSALESNLSVCNCLISMY 441 (1076)
Q Consensus 364 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t-~~~ll~a~~~~g-~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y 441 (1076)
++.+-..+...++.++|+.+..++.+. .|+..| |..--..+...+ +++++...++.+++.... +..+|+..--.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 344444455566777777777776653 344332 333333333444 456677777777666533 333455444444
Q ss_pred HhCCCh--HHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc---CCh
Q 038364 442 SRNNKL--ELATRVFDSMK---DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH---GSY 513 (1076)
Q Consensus 442 ~k~g~~--~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~---g~~ 513 (1076)
.+.|+. +++...++++. .+|..+|+-....+.+.|+++++++.++++++.++. |..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 455542 45666666553 456678888888888888888888888888887776 777777766655554 222
Q ss_pred ----hhHHHHHHHHHhcCCCCC-cccHHHHHHHHHh----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 038364 514 ----QNVLTLLRGMQSLGFRPN-GSSVSVVLQAVTE----LRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVK 579 (1076)
Q Consensus 514 ----~~Al~l~~~m~~~gi~pd-~~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k 579 (1076)
+++++...++.... |+ ...|.-+...+.. .+...++......+.+.++ .+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 35566665555544 43 3344444444443 1233445555555554332 244555666676664
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.43 E-value=0.0012 Score=58.45 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677788889999999888876 3334 34677778888888999999999999999999998889999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 038364 921 RWEDVERLRHSMDE 934 (1076)
Q Consensus 921 ~~~eA~~~~~~m~~ 934 (1076)
++++|.+.+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999999888754
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.43 E-value=0.00016 Score=50.46 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 038364 362 LLWNEIIMVKLRNEKWENAIKLFREMQFSSA 392 (1076)
Q Consensus 362 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 392 (1076)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.40 E-value=0.64 Score=56.85 Aligned_cols=159 Identities=16% Similarity=0.067 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHH
Q 038364 771 SWNCMIMGFAIYGNGK---EAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~---~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li 847 (1076)
+-|.|+..+.+.++.. +|+-+++.-... -.-|..+-..+|..|+..|-+..|.+.|+.+.-+ .+.-|..-|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 4478889999998876 455566665552 1334456677888999999999999999988665 5665544332 33
Q ss_pred HHHHhcCCHHHHHHHHHhCC-C-CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC----chhHHHHHHHHHHcC
Q 038364 848 DLLGKAGYLDEAWDFIRTMP-F-KPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN----SANYNLMMNLLAMSN 920 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m~-~-~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~----~~~y~~L~~~y~~~G 920 (1076)
..+...|++..|...++... + ..+ ..+-.-+.-|| ++|.+..-.+...---.+.-.. ...-+...+.+...+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55666778887777766641 1 001 11222222333 5566665544332111111111 122345677788889
Q ss_pred ChHHHHHHHHHHH
Q 038364 921 RWEDVERLRHSMD 933 (1076)
Q Consensus 921 ~~~eA~~~~~~m~ 933 (1076)
+.++-.+.+..|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 9999999998885
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.074 Score=56.06 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=70.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEG 823 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA 823 (1076)
-...|...|+.++|.+.......-+....| +..+.+..+.+-|.+.+++|.+ --+..|.+-|..++.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv-------- 180 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWV-------- 180 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHH--------
Confidence 344566666666666666553222222222 2233444455555666666654 123334443333322
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 824 WKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
....-.+++.+|.-+|++|. ..|...+.+....+|...|++++|+.+++.++..
T Consensus 181 ------------------------~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 181 ------------------------KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred ------------------------HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 22222334455555555551 3455555555555555556666666666666665
Q ss_pred CCCCchhHHHHHHHHHHcCChHH
Q 038364 902 EPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 902 ~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
+++++++...++-.--..|+-.+
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChH
Confidence 66555555555544444555433
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.33 E-value=0.00022 Score=49.72 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 038364 463 SSWNSMISSYTGLGYVDVAWSLFNKMNSSR 492 (1076)
Q Consensus 463 ~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g 492 (1076)
++||+||++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 356666666666666666666666666655
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.32 E-value=0.0035 Score=60.93 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=85.3
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 038364 791 LFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF 868 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~ 868 (1076)
+|++..+ ..|+.. ....+...+...|++++|.+.|+.+... ...+...+..+...|.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 456553 3445556677888999999988887653 1234667788888898999999999888876 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch
Q 038364 869 KP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 869 ~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
.| +...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5667888888899999999999999999999998754
No 146
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.30 E-value=0.023 Score=65.85 Aligned_cols=216 Identities=15% Similarity=0.130 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 615 VNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 615 ~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
-+.+.-+++|++.|-.||.+. +.+.++-.|++.+|.++|.+- |.-..|+++|..|
T Consensus 617 L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~----------------------G~enRAlEmyTDl 671 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS----------------------GHENRALEMYTDL 671 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc----------------------CchhhHHHHHHHH
Confidence 344445677788887787753 445677788999998888753 5556677777666
Q ss_pred hhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHH
Q 038364 695 QQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNC 774 (1076)
Q Consensus 695 ~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~ 774 (1076)
.-- -...-+...|.-++-+.+...-.+ ...++.--.+-..|+..+|+.++|..+.
T Consensus 672 RMF----------D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------- 726 (1081)
T KOG1538|consen 672 RMF----------DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------- 726 (1081)
T ss_pred HHH----------HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh-------------
Confidence 421 112223333444333333322111 1111111123456667777777776653
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G 854 (1076)
+.+|-.+-++++-+++... +..+...+..-+-+...+.-|.++|.+|-. ...++++....+
T Consensus 727 -----~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~ 787 (1081)
T KOG1538|consen 727 -----GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQ 787 (1081)
T ss_pred -----hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecc
Confidence 3345555555554444321 223333333334455666778888888743 246788888899
Q ss_pred CHHHHHHHHHhCC-CCCCHHH-HH----------HHHHHHHHcCCchHHHHHHHHHh
Q 038364 855 YLDEAWDFIRTMP-FKPDATI-WG----------ALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 855 ~l~eA~~l~~~m~-~~pd~~~-~~----------~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
+++||..+-++.| ..||+.. |. ..-.|+.+.|+..+|.++++++.
T Consensus 788 ~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 788 RWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred cchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 9999999988885 4455431 11 11234455555555555555543
No 147
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.045 Score=57.58 Aligned_cols=172 Identities=14% Similarity=0.097 Sum_probs=119.3
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038364 553 ESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPD 632 (1076)
Q Consensus 553 ~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd 632 (1076)
.+.+.+.......+......-...|++.|+.++|.+.......-+....| ...+.+..+.+-|.+.+++|.+-. +
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id---e 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQID---E 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc---h
Confidence 34445555545555444444456788999999999998884433333333 344567788899999999998653 6
Q ss_pred ccchhhhhhhhhh----cCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHH
Q 038364 633 LVSWNSLVSGYSI----WGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSS 708 (1076)
Q Consensus 633 ~~t~~~Li~~y~k----~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~ 708 (1076)
..|.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.|-+..++...|++++|..++++..... .-++.|+..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHH
Confidence 6788777777765 45789999999999763 57888888889999999999999999999988753 335666666
Q ss_pred HHHHHhcCCCchh-HHHHHHHHHH
Q 038364 709 LLQTCGGLGLLQN-GKEIHCLCLK 731 (1076)
Q Consensus 709 lL~a~~~~g~~~~-a~~i~~~~~~ 731 (1076)
++......|.-.+ ..+...++..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Confidence 6665555555433 3344444443
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.23 E-value=0.0057 Score=60.51 Aligned_cols=114 Identities=13% Similarity=0.089 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCCchH
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDA----TIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~----~~~~~Ll~a~~~~g~~e~ 890 (1076)
.++.+.+...++.+.++++-.|- ....-.+...+...|++++|.+.++... ..||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555655554322210 1222234455566666666666666552 12332 233344555666677777
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
|+..++.. .-.+-.+..+..++++|.+.|++++|...+++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666552 22233345666778888888888888877765
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.18 E-value=0.00039 Score=61.62 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHH
Q 038364 853 AGYLDEAWDFIRTM-PFKP---DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERL 928 (1076)
Q Consensus 853 ~G~l~eA~~l~~~m-~~~p---d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~ 928 (1076)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|+++||.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666777766665 1122 455666678888888888888888888 777777777777889999999999999988
Q ss_pred HHH
Q 038364 929 RHS 931 (1076)
Q Consensus 929 ~~~ 931 (1076)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.16 E-value=0.00082 Score=56.94 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 038364 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN-RWEDVERLRHSMDE 934 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G-~~~eA~~~~~~m~~ 934 (1076)
++.+|..+...+...|++++|+..|+++++++|+++..|..++.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999999988754
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.10 E-value=0.0043 Score=58.50 Aligned_cols=93 Identities=16% Similarity=0.003 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMN 914 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~ 914 (1076)
+...+..+.+.|++++|.+.++++ ...|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555555555555555554 11222 2234445555566666666666666666655553 334556666
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 038364 915 LLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 915 ~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+|.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665443
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.09 E-value=0.0011 Score=55.45 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=49.4
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+...+...|++++|+..++++++.+|+++..+..++.++...|++++|.+.++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44567788999999999999999999999999999999999999999999998886543
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.09 E-value=0.0057 Score=70.21 Aligned_cols=86 Identities=10% Similarity=0.062 Sum_probs=49.0
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
.+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344455555555555554 2222 33455555555666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHh
Q 038364 927 RLRHSMDE 934 (1076)
Q Consensus 927 ~~~~~m~~ 934 (1076)
+.+++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 66665543
No 154
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.08 E-value=0.082 Score=66.29 Aligned_cols=217 Identities=11% Similarity=0.060 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhcC--CCChh-HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038364 431 LSVCNCLISMYSRNNKLELATRVFDSMK--DHNLS-SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGH 507 (1076)
Q Consensus 431 ~~v~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~-s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~ 507 (1076)
...+..|++.|...+++++|.++.+.-. .|+.. .|-.+...+.+.++.+++..+ .+ +...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhc
Confidence 3455666666666666666666655432 22222 111111234444444443333 11 1222
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHH
Q 038364 508 FTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQ 587 (1076)
Q Consensus 508 ~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~ 587 (1076)
....++.-+..+...|.+.+ -+...+..+..+|.+.|..+++.++++.+++.. .-|+.+.|.+...|+.. ++++|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 22233323333333333332 223345555566666677777777777777666 33666667777777777 777777
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHh-cCCCC
Q 038364 588 EVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKN-SGIYP 666 (1076)
Q Consensus 588 ~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~-~gi~p 666 (1076)
.++.+... .|....++.++.+++.++... .|+.+.+ -.++.+.+.. .|...
T Consensus 170 ~m~~KAV~-----------~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~ 221 (906)
T PRK14720 170 TYLKKAIY-----------RFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTR 221 (906)
T ss_pred HHHHHHHH-----------HHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccch
Confidence 66655332 255555666666666666544 2222221 1222222222 12223
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~ 696 (1076)
-+.++-.+...|-..++++++..+++...+
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 334444455555556666666666666554
No 155
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.02 E-value=0.64 Score=51.59 Aligned_cols=240 Identities=15% Similarity=0.151 Sum_probs=154.9
Q ss_pred CCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 038364 681 NENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREV 760 (1076)
Q Consensus 681 ~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~v 760 (1076)
.|++++|.+-|+.|... .+--..-+..|.-...+.|+.+.+.++-+..-+. -..-.....++++..+..|+|+.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 46666666666666531 0111122334444455778888888887776653 122346678899999999999999999
Q ss_pred HHhcC-----CCChH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 038364 761 FRKSA-----NKTLA--SWNCMIMGFAI---YGNGKEAILLFHELLETGFQPDAITF-TALLAACKNSGLVEEGWKYFDS 829 (1076)
Q Consensus 761 f~~m~-----~~d~~--s~n~li~~~~~---~g~~~~Al~l~~~M~~~g~~Pd~~t~-~~ll~a~~~~g~~~eA~~~~~~ 829 (1076)
.+.-. ++|+. .--.|+.+-+. .-+...|...-.+..+ +.||-+.- ..-..++.+.|++.++-.+++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 98644 34543 22233332222 2345666666666555 67887643 3334568899999999999999
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 830 MSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 830 m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
+.+. .|.+..+... .+.|.|+. +..-+++. .++|+ .....++..+-...|++..|..-.+.+..++|.
T Consensus 289 aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 289 AWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 9754 5666554332 33455543 22222222 23454 445666777888899999999999999999997
Q ss_pred CchhHHHHHHHHHHc-CChHHHHHHHHHH
Q 038364 905 NSANYNLMMNLLAMS-NRWEDVERLRHSM 932 (1076)
Q Consensus 905 ~~~~y~~L~~~y~~~-G~~~eA~~~~~~m 932 (1076)
. ..|.+|+++-... |+-.++...+.+-
T Consensus 362 e-s~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 362 E-SAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred h-hHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 5 7899999987666 8877777666554
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.01 E-value=0.016 Score=69.50 Aligned_cols=150 Identities=16% Similarity=0.093 Sum_probs=89.1
Q ss_pred CCChHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 038364 766 NKTLASWNCMIMGFAIY--G---NGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT 839 (1076)
Q Consensus 766 ~~d~~s~n~li~~~~~~--g---~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~ 839 (1076)
..|...|...+.|.... + ..++|..+|++..+ ..||... +..+..++... ++..|.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~~ 395 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQPL 395 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCCc
Confidence 45667777777664432 2 25678899999988 6888643 32222111100 011121
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
.. ++++.+.+..++. ....+..++.++.-.....|++++|...++++++++| +...|..++.+
T Consensus 396 ~~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 DE------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred cH------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 00 1222233332221 1233456666666666667888888888888888888 46788888888
Q ss_pred HHHcCChHHHHHHHHHHHhCCCccCcceEEEE
Q 038364 916 LAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQ 947 (1076)
Q Consensus 916 y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~ 947 (1076)
|...|+.++|.+.+++..... +..|.+.|++
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~-P~~pt~~~~~ 493 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLR-PGENTLYWIE 493 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 888888888888888876655 3344555544
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.00 E-value=0.0065 Score=57.27 Aligned_cols=103 Identities=15% Similarity=0.031 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 038364 808 TALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGS 881 (1076)
Q Consensus 808 ~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a 881 (1076)
..+...+...|++++|.+.|+.+...+.-.| ....+..+...+.+.|++++|.+.+++. ...|+ ..+|..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344445556666666666666654321111 1234455667777777777777777765 22233 4467777777
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
+...|+.+.|...++++++..|+++..+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 88888888888888888888888754443
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.00 E-value=1.6 Score=53.66 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=85.1
Q ss_pred hCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChH---
Q 038364 270 SFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVE--- 346 (1076)
Q Consensus 270 ~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~--- 346 (1076)
+.|.. ++|..+++.....+.. |..|+..+-..+.+.+..+++..+++++.+.- |+......+-.+|.+.+++.
T Consensus 55 r~gk~-~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 55 RLGKG-DEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HhcCc-hhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 5555444444333222 44455444444455555555555555554432 33444455555555555442
Q ss_pred -HHHHHHhhcCCCCChhhHHHHHHHHHhCCChh---------HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCcHHH
Q 038364 347 -SANKLFSEVSDLEDDLLWNEIIMVKLRNEKWE---------NAIKLFREMQFSS-AKAISRTIVKMLQACAKVGAFHEG 415 (1076)
Q Consensus 347 -~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~---------eAl~lf~~M~~~g-~~p~~~t~~~ll~a~~~~g~~~~a 415 (1076)
.|.+++...|. +--.-|+.+--.+......+ -|.+.++.+.+.+ ---+..-..--+......|..++|
T Consensus 131 kaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 34555555555 44445544322221111111 2333444444433 111111111222333455667777
Q ss_pred HHHHH-HHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhc
Q 038364 416 KQIHG-YVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSM 457 (1076)
Q Consensus 416 ~~i~~-~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m 457 (1076)
..++. .....-..-+...-|.-++++.+++++.+-.++-.+.
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 77663 2223333445555666677777777776655444433
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.95 E-value=0.022 Score=56.25 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=65.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--cccHHHHHHHHHhcCC
Q 038364 782 YGNGKEAILLFHELLETGFQPDA----ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT--IEHYSCMVDLLGKAGY 855 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~----~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~--~~~y~~li~~l~r~G~ 855 (1076)
.++..++...++++.+. .|+. .....+...+...|++++|...|+..... .-.|. ......+...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 56666666666666653 2333 12223334466667777777777766654 21121 1233345666677777
Q ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 856 LDEAWDFIRTMPF-KPDATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 856 l~eA~~l~~~m~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
+++|+..++..+. ......+......+...|+.++|+..|+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777777766532 223345555666677777777777777664
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.88 E-value=0.0074 Score=61.64 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
..+..+...|.+.|++++|...+++. ...|+ ...|..+...+...|+++.|+..+++++++.|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34556666677777777777777665 12222 35788888889999999999999999999999998889999999
Q ss_pred HHHcCC--------------hHHHHHHHHHHHh
Q 038364 916 LAMSNR--------------WEDVERLRHSMDE 934 (1076)
Q Consensus 916 y~~~G~--------------~~eA~~~~~~m~~ 934 (1076)
|...|+ +++|.+++++..+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 988877 4566666666544
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.063 Score=56.16 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=101.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLASWNCM---IMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLV 820 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~l---i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 820 (1076)
+.-+...+|+.+.|...++.+..+-+-++..+ ..-+-..|++++|+++++...+.. +.|.+++.-=+...-..|.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 33344456677777777666553222222211 123445677788888888877754 44556666656556666776
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHc---CCchHHHHHH
Q 038364 821 EEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKP-DATIWGALLGSCRIH---GHLEYAEIAS 895 (1076)
Q Consensus 821 ~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~p-d~~~~~~Ll~a~~~~---g~~e~A~~~~ 895 (1076)
-+|++-+....+ .+.-|.+.|.-+.++|...|++++|.-.++++- +.| ++..+..+...+... .|++.|.+.+
T Consensus 137 l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 677777777665 355677788888888888888888888888762 344 344445555443333 3677788888
Q ss_pred HHHhcCCCCCc
Q 038364 896 RRLFKLEPCNS 906 (1076)
Q Consensus 896 ~~l~~l~P~~~ 906 (1076)
++.+++.|.+.
T Consensus 215 ~~alkl~~~~~ 225 (289)
T KOG3060|consen 215 ERALKLNPKNL 225 (289)
T ss_pred HHHHHhChHhH
Confidence 88888888553
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.86 E-value=0.0067 Score=61.68 Aligned_cols=93 Identities=14% Similarity=-0.082 Sum_probs=74.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
...|..++..+...|++++|...+++. ...|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445666777777888899988888876 23232 3478889999999999999999999999999999988889998
Q ss_pred HHH-------HcCChHHHHHHHHHH
Q 038364 915 LLA-------MSNRWEDVERLRHSM 932 (1076)
Q Consensus 915 ~y~-------~~G~~~eA~~~~~~m 932 (1076)
+|. +.|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888666655543
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=0.97 Score=53.47 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=61.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChH---HHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLA---SWN----CMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKN 816 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~---s~n----~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~ 816 (1076)
-|.++-+.|+.-+|.+++.+|.++... .|- ..+-+-.-..+..++++-.++....|...|... +..
T Consensus 929 aIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lle 1001 (1189)
T KOG2041|consen 929 AIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLE 1001 (1189)
T ss_pred HHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhh
Confidence 466788888888888887777643221 111 111111111233444444455555554433322 223
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHH
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKPDATIWGAL 878 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~pd~~~~~~L 878 (1076)
.|...++-++.+...+ | ....|+-.|..--...|+++.|++.--.+. +-|-..+|..|
T Consensus 1002 s~~l~~~~ri~~n~Wr--g--AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTWR--G--AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hhhhhhHHHHHHhhhh--h--HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 3444455555443332 1 224455555566667888888887544332 33444455444
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.013 Score=62.88 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=57.9
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPTI-EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~~-~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A 891 (1076)
.+.+++++|+..|.... .+.|+- .-|.--..+|.+-|..+.|.+=.+.. .+.|... .|..|..+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34455666666665554 234442 33333455566666666666555544 3445433 788888888888888888
Q ss_pred HHHHHHHhcCCCCCch
Q 038364 892 EIASRRLFKLEPCNSA 907 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~ 907 (1076)
++.|+++++++|++..
T Consensus 169 ~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHhhhccCCCcHH
Confidence 8888888889888753
No 165
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.76 E-value=0.011 Score=68.07 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHH
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEE--EIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLIS 676 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~~~--g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~ 676 (1076)
+....++.......+.+++..++.+.+.. ...--..|..++|+.|.+.|..+++.++++.=...|+-||..++|.|++
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 34444455555555566666666666544 1222233445677777777777777777776666777777777777777
Q ss_pred HHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 038364 677 GSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGL 716 (1076)
Q Consensus 677 ~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~ 716 (1076)
.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777766666666666666666666544
No 166
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.76 E-value=0.01 Score=68.43 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVT 543 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~ 543 (1076)
|..++|+.|.+.|..++++++++.=...|+-||..|+|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999998887788888877777776
Q ss_pred hc
Q 038364 544 EL 545 (1076)
Q Consensus 544 ~~ 545 (1076)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 55
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.71 E-value=0.018 Score=69.06 Aligned_cols=49 Identities=6% Similarity=0.035 Sum_probs=38.9
Q ss_pred chHHHHHHHHHhcC--CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 888 LEYAEIASRRLFKL--EPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l--~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.+.+...+++...+ +|.++..|..++-.+...|++++|...+++..+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34555666665553 77778889999999889999999999999997766
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.02 Score=63.44 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=75.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 847 VDLLGKAGYLDEAWDFIRTM-PFK-----PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m-~~~-----pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
.+...+.|++.+|.+.+.+. .+. |++..|.....+..++|+.++|+.-.+.+++++|....+|..-++.+...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 35567899999999999886 344 445566666677788999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 038364 921 RWEDVERLRHSMDEVG 936 (1076)
Q Consensus 921 ~~~eA~~~~~~m~~~g 936 (1076)
+|++|.+-+++..+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999886654
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.64 E-value=0.014 Score=53.33 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------ChhhHHHHHHHHHhcCCCCCccc
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRI-QPDIITWNCLLSGHFTHG--------SYQNVLTLLRGMQSLGFRPNGSS 534 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~-~pd~~ty~~Li~~~~~~g--------~~~~Al~l~~~m~~~gi~pd~~t 534 (1076)
|-...|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. +.-+.+.+++.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777777999999999999999999 999999999999988764 34567888999999999999999
Q ss_pred HHHHHHHHHh
Q 038364 535 VSVVLQAVTE 544 (1076)
Q Consensus 535 ~~~ll~a~~~ 544 (1076)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988877653
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.64 E-value=0.13 Score=57.12 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP---F-----KPDAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~---~-----~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+..+..++.+.|++++|.++|++.. . +.+.. .+...+-.+...||...|...+++..+.+|.-
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3445666777777777777776641 1 11111 12222334455678888888888888887754
No 171
>PRK15331 chaperone protein SicA; Provisional
Probab=96.64 E-value=0.024 Score=55.93 Aligned_cols=90 Identities=14% Similarity=0.040 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCCh
Q 038364 845 CMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRW 922 (1076)
Q Consensus 845 ~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~ 922 (1076)
....-+...|++++|..+|+-+- ..-+..-|..|...|...++++.|...|..+..++++|+..+...+..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44455678999999999998762 2345667888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 038364 923 EDVERLRHSMDE 934 (1076)
Q Consensus 923 ~eA~~~~~~m~~ 934 (1076)
++|.+-++...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998744
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.61 E-value=0.016 Score=50.82 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 845 CMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 845 ~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
.+...+...|++++|.+.+++. .. +.+..+|..+...+...|+.+.|...++++++..|
T Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 39 NLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3344444444444444444442 11 12223555555556666666666666666665554
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.59 E-value=0.18 Score=58.79 Aligned_cols=229 Identities=11% Similarity=0.058 Sum_probs=126.8
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHH---------HHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHH--HHHHHcC
Q 038364 494 QPDIITWNCLLSGHFTHGSYQNVLTL---------LRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESH--GYILRNG 562 (1076)
Q Consensus 494 ~pd~~ty~~Li~~~~~~g~~~~Al~l---------~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~--~~~~~~g 562 (1076)
.|-.+.+.+-+..|...|.+++|.++ ++.+.... .+.-.+...=+||.+.+++..-+-+. +.+.++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 33455666667777777877777654 22222111 34445666667777777766554443 4556677
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 563 LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 563 ~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
-.|+.... .+.++-.|++.+|.++|.+ +|.-..|+++|..|+-- -...-
T Consensus 631 e~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE 679 (1081)
T KOG1538|consen 631 ETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQE 679 (1081)
T ss_pred CCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHH
Confidence 76776543 3455667888888888875 34555666666655421 12233
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHH------HhhcCC---CCChhhHHHHHHHH
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQ------MQQEDI---KPNSTTMSSLLQTC 713 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~------m~~~gi---~pd~~t~~~lL~a~ 713 (1076)
|.+.|..++-..+.++-.+. ..|+.-=.+-...+..+|+.++|.++.-+ +.+-+- ..+..++..+...+
T Consensus 680 ~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~yl 757 (1081)
T KOG1538|consen 680 FLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYL 757 (1081)
T ss_pred HhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHH
Confidence 44445544444443332210 00000001122333445555555544221 111111 22334555555555
Q ss_pred hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 038364 714 GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN 766 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 766 (1076)
.+...+..|.++|..+-.. .+++++....++|++|..+-++.++
T Consensus 758 k~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 6677778888888766442 4688899999999999999888876
No 174
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.55 E-value=0.024 Score=65.12 Aligned_cols=103 Identities=16% Similarity=0.020 Sum_probs=73.1
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~ 890 (1076)
+...|++++|.++|+++.+. .|+ ...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 44556777777777766542 333 445666677777777777777777775 3344 45577788888888899999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
|+..++++++++|+++.....+..+..+.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999998887777766654444
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.55 E-value=0.04 Score=56.19 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHH
Q 038364 769 LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD--AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSC 845 (1076)
Q Consensus 769 ~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~ 845 (1076)
...|..+...+...|++++|+..|++..+....++ ...+..+...+.+.|++++|...+++..+. .|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34567777788888888888888888876433332 245666666778888888888888877653 343 445556
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
+..+|...|+...|..-++.. ...++.|...++++++++|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666777777666555433321 112577889999999999876 6666666666655
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.55 E-value=0.0077 Score=64.47 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=79.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 847 VDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
.+-+.+.+++++|+..+.+. .+.| |++.|..-..+|.+.|.++.|++..+.++.++|..+.+|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45577899999999999886 4554 666777778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 038364 925 VERLRHSMDEVG 936 (1076)
Q Consensus 925 A~~~~~~m~~~g 936 (1076)
|++.+++..+..
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 999998876544
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.53 E-value=0.0016 Score=46.57 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=30.9
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 895 SRRLFKLEPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 895 ~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.52 E-value=0.077 Score=53.83 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHH
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD--AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCM 846 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~l 846 (1076)
..|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|.+.++...+. .|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHH
Confidence 4566777777778888888888888876432222 235666667777888888888888777642 232 3344455
Q ss_pred HHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 847 VDLLG-------KAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 847 i~~l~-------r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
...|. +.|++++|... +++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55555 33444433332 345667777888888864
No 179
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=2.3 Score=50.45 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=122.1
Q ss_pred ChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCcHHHHHHHHHH
Q 038364 344 DVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFS-SAKAISRTIVKMLQACAKVGAFHEGKQIHGYV 422 (1076)
Q Consensus 344 ~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 422 (1076)
.+++|.+..+.-| ....|..+...-.+.-.++-|...|-+.... |++ + +..-..+|..-
T Consensus 678 gledA~qfiEdnP---HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik--------~---------vkrl~~i~s~~ 737 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNP---HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK--------L---------VKRLRTIHSKE 737 (1189)
T ss_pred chHHHHHHHhcCC---chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh--------H---------HHHhhhhhhHH
Confidence 3567777666544 4567877777666666666666666544321 211 0 01111222211
Q ss_pred HHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC--CChhhH
Q 038364 423 LKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQ--PDIITW 500 (1076)
Q Consensus 423 ~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~--pd~~ty 500 (1076)
. -.+=|.+| -|++++|.+++-.|.++|.. |.-+.+.|++-...++++.= ..+.. --..+|
T Consensus 738 ~----------q~aei~~~--~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g-~~d~dD~~~e~A~ 799 (1189)
T KOG2041|consen 738 Q----------QRAEISAF--YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNG-GSDDDDEGKEDAF 799 (1189)
T ss_pred H----------HhHhHhhh--hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHcc-CCCcchHHHHHHH
Confidence 1 12223333 37788888888888777753 44455556665555554321 00110 013467
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 038364 501 NCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKN 580 (1076)
Q Consensus 501 ~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~ 580 (1076)
+.+...++....+++|.+.+..-... ...+.++.+..+++.-+.+- ..++-|....-.+.+|+...
T Consensus 800 r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 800 RNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhh
Confidence 77777777777777777766543211 12333444433333322221 12344555666777888888
Q ss_pred CCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038364 581 DCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQME 625 (1076)
Q Consensus 581 g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~ 625 (1076)
|.-++|.+.|-+-..|. +.+..|...+++.+|.++-+...
T Consensus 866 GMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 866 GMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred chHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888777665542 33456666777777777766543
No 180
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.50 E-value=0.013 Score=60.28 Aligned_cols=97 Identities=14% Similarity=0.294 Sum_probs=70.2
Q ss_pred HHHHHHhc--CCCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----------
Q 038364 450 ATRVFDSM--KDHNLSSWNSMISSYTGL-----GYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHG----------- 511 (1076)
Q Consensus 450 A~~lf~~m--~~~d~~s~n~lI~~~~~~-----g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g----------- 511 (1076)
-...|++. ..+|-.+|..+|..|.+. |+.+=....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 567777888888887654 677778888899999999999999999998875522
Q ss_pred -----ChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038364 512 -----SYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELR 546 (1076)
Q Consensus 512 -----~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g 546 (1076)
+-+-|++++++|...|+.||..|+..+++.+.+.+
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 23456667777777776677666666666665544
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.50 E-value=0.003 Score=53.24 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=44.2
Q ss_pred HHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 883 RIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 883 ~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
...|++++|+..++++++.+|++...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35688888999999999999998888889999999999999999888887543
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.48 E-value=0.0071 Score=50.45 Aligned_cols=61 Identities=25% Similarity=0.267 Sum_probs=49.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 846 MVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+...+.+.|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++++++|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999887 44564 55888899999999999999999999999999864
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.47 E-value=0.0064 Score=52.01 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=50.4
Q ss_pred HHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 879 LGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 879 l~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
...+...++++.|..+++++++++|+++..+..++.+|.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567788999999999999999999999999999999999999999999999886554
No 184
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.17 Score=53.10 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=122.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA-CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a-~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
|..++-+....|+.+.|...++++... + |.+.-...+=.. +-..|++++|.++++++.++ . +-|..+|.--+-++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHH
Confidence 334455666788999999999998874 3 665433222221 55679999999999999876 2 33466777777777
Q ss_pred HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC---hHHH
Q 038364 851 GKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR---WEDV 925 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~---~~eA 925 (1076)
-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|.-.+|+++-+.|.++..+.-+++++.-.|- .+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7788877888777665 4678999999999999999999999999999999999999999999998877665 4456
Q ss_pred HHHHHHHHh
Q 038364 926 ERLRHSMDE 934 (1076)
Q Consensus 926 ~~~~~~m~~ 934 (1076)
.+.+.+..+
T Consensus 211 rkyy~~alk 219 (289)
T KOG3060|consen 211 RKYYERALK 219 (289)
T ss_pred HHHHHHHHH
Confidence 666666543
No 185
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.40 E-value=0.014 Score=59.87 Aligned_cols=96 Identities=18% Similarity=0.275 Sum_probs=59.9
Q ss_pred HHHHhhc--CCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcC------------
Q 038364 587 QEVFDNM--KNRNIVAWNSLISGYCFK-----GLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWG------------ 647 (1076)
Q Consensus 587 ~~lf~~m--~~~d~~~~n~lI~~~~~~-----g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g------------ 647 (1076)
...|++. ..+|..+|..+|..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 446777777777777643 667777777788888888888888888888775522
Q ss_pred ----ChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCC
Q 038364 648 ----QSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNE 682 (1076)
Q Consensus 648 ----~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g 682 (1076)
+-+-|.+++++|...|+.||..++..+++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 22344555555555555555555555555554443
No 186
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.40 E-value=0.67 Score=51.46 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=116.9
Q ss_pred cCCHHHHHHHHHhcC---CCChHHHHHHHH--HHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 038364 751 SGNLKSAREVFRKSA---NKTLASWNCMIM--GFAIYGNGKEAILLFHELLETGFQPDAI--TFTALLAACKNSGLVEEG 823 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~---~~d~~s~n~li~--~~~~~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~~~g~~~eA 823 (1076)
.|+-..|+++-.+.. ..|....--++. +-.-.|++++|.+-|+-|.. .|... -...|.-.--+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666554332 233333333332 22346788888888888875 34332 223333334567888888
Q ss_pred HHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH--HHHHHHHH---HHHcCCchHHHH
Q 038364 824 WKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPDAT--IWGALLGS---CRIHGHLEYAEI 893 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd~~--~~~~Ll~a---~~~~g~~e~A~~ 893 (1076)
+++-+... +..|. ...+.+.++..+..|+++.|+++++.- .+++|.. .--.|+.+ -....|...|..
T Consensus 174 r~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 174 RHYAERAA---EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHH---hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88877664 44565 446778888888899999999888765 2556544 22334433 233456778888
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 894 ASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 894 ~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
...+..++.|+-...-+.-+..|.+.|+..++.++++.+
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 889999999998888888899999999999999999888
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.32 E-value=0.061 Score=59.59 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA-CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDL 849 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a-~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~ 849 (1076)
+|..++....+.+..+.|..+|++.++.+ ......|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56666666666666777777777776432 1122233332222 33356666688888888775 34456677788888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 850 LGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+.+.|+.+.|..+|++. ..-|. ..+|...+.--.++|+.+....+.+++.+.-|++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 88888888888888885 22232 3489999999899999999999998888887764
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.18 E-value=0.0064 Score=51.19 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 852 KAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 852 r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
..|++++|.++++++ ...| +..++..+..+|...|++++|...++++...+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 455566666666554 2222 4455556666666666666666666666666666544444443
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.10 E-value=0.6 Score=50.47 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=107.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCCh---HH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTL---AS---WNCMIMGFAIYGNGKEAILLFHELLETGFQPDA--ITFTALLAACK 815 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~---~s---~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~--~t~~~ll~a~~ 815 (1076)
....+.+.|++++|.+.|+......+ .. .-.++.+|-+.+++++|+..|++..+. .|+. +.+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 44455678999999999988875322 22 224567788899999999999999873 4443 34444444433
Q ss_pred h--cC---------------C---HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 038364 816 N--SG---------------L---VEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIW 875 (1076)
Q Consensus 816 ~--~g---------------~---~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~ 875 (1076)
+ .+ + ..+|.+.|+.+.++ |-.+.-..+|...+..+. +...-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHH---HHHHH
Confidence 2 11 1 12344444444443 333333455554444331 11111
Q ss_pred H--HHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 876 G--ALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 876 ~--~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
. ....-|.+.|++.-|..-++.+++--|+. .++...|.+.|.+.|..++|.++.....
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1 23344788899999999999999887765 4568899999999999999999887663
No 190
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.06 E-value=0.097 Score=57.95 Aligned_cols=140 Identities=13% Similarity=0.057 Sum_probs=80.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 038364 499 TWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQA-VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMY 577 (1076)
Q Consensus 499 ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a-~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y 577 (1076)
+|..++...-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..||+..++. +..+...|...++++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344444444454445555555555543211 011111111111 22245556677777777665 455777788888888
Q ss_pred HhCCCHHHHHHHHhhcCC--C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 578 VKNDCLQNAQEVFDNMKN--R----NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 578 ~k~g~~~~A~~lf~~m~~--~----d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
.+.++.+.|+.+|++... + -...|...|.-=.+.|+.+.+.++.+++.+. -|+..++..+++-
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 888999999999988765 2 3357888888888888888888888877764 3444444334333
No 191
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.02 E-value=0.0098 Score=52.60 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHH
Q 038364 782 YGNGKEAILLFHELLETGF-QPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~-~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA 859 (1076)
.|++++|+.+|+++.+..- .|+...+..+..++.+.|++++|.++++.. ...|+ ......+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3556666666666665321 112233333455555566666666655551 11121 12222334555555555555
Q ss_pred HHHHH
Q 038364 860 WDFIR 864 (1076)
Q Consensus 860 ~~l~~ 864 (1076)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.00 E-value=0.021 Score=65.17 Aligned_cols=65 Identities=14% Similarity=-0.067 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh---HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN---YNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~---y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+...|+.+..+|...|++++|+..++++++++|++..+ |+.++.+|...|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45577777777777777777777777777777777644 777777777777777777777776554
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.00 E-value=4 Score=46.61 Aligned_cols=204 Identities=11% Similarity=0.040 Sum_probs=112.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccc-------hhhhhhhhhhc----CChhHHHHHHHHhHhcCCCC
Q 038364 598 IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVS-------WNSLVSGYSIW----GQSKEALVIIHHMKNSGIYP 666 (1076)
Q Consensus 598 ~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t-------~~~Li~~y~k~----g~~~~A~~lf~~m~~~gi~p 666 (1076)
+.++..+++...+.++..+|.+.+.-+..- .|+... -.++-+..+.. -+...=+.+++......+..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 345666666777777777776666655533 232221 01222222211 12223334444444332221
Q ss_pred -chHHHHHH-HHHHhcCCC-hhHHHHHHHHHhhcCCCCCh-----hhHHHHHHHHhc---CCCchhHHHHHHHHHHcCCC
Q 038364 667 -NVVTWTSL-ISGSLQNEN-YRESLKFFIQMQQEDIKPNS-----TTMSSLLQTCGG---LGLLQNGKEIHCLCLKNGFI 735 (1076)
Q Consensus 667 -d~~ty~~L-I~~~~~~g~-~~eAl~l~~~m~~~gi~pd~-----~t~~~lL~a~~~---~g~~~~a~~i~~~~~~~g~~ 735 (1076)
..++|-.- ..-+-+.|. -++|+++++...+ +.|.. .++.-+=.+|.. ...+.+-..+-+.+.+.|+.
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 12333221 233445555 7788888888765 33322 222222233332 23455666666777777887
Q ss_pred C----ChhhHHHHHHH--HhhcCCHHHHHHHHHhc--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 038364 736 K----DAYVATGLIDM--YSKSGNLKSAREVFRKS--ANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITF 807 (1076)
Q Consensus 736 ~----d~~~~~~Li~~--y~k~G~~~~A~~vf~~m--~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~ 807 (1076)
| +....|.|.++ +-..|++.++.-.-... ..|++.+|..+.-+.....++++|.+.|.. ++|+..++
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ 528 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMR 528 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhH
Confidence 6 33455666554 34568888876543333 357888888888888888899999888876 46677666
Q ss_pred HHH
Q 038364 808 TAL 810 (1076)
Q Consensus 808 ~~l 810 (1076)
.+=
T Consensus 529 dsk 531 (549)
T PF07079_consen 529 DSK 531 (549)
T ss_pred HHH
Confidence 554
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.99 E-value=3.4 Score=45.77 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCCcc--cHH
Q 038364 774 CMIMGFAIYGNGKEAILLFHELLETGFQ-----PDAI-TFTALLAACKNSGLVEEGWKYFDSMSTD-YNIIPTIE--HYS 844 (1076)
Q Consensus 774 ~li~~~~~~g~~~~Al~l~~~M~~~g~~-----Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~-~g~~p~~~--~y~ 844 (1076)
.+...+.+.|++++|+++|++....-.. .+.. .|...+-.+...|++..|.+.|++.... .++..+.+ ...
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 3556677777777777777776653222 1111 2222222455567777777777776532 12222222 233
Q ss_pred HHHHHHHh--cCCHHHHHHHHHhC
Q 038364 845 CMVDLLGK--AGYLDEAWDFIRTM 866 (1076)
Q Consensus 845 ~li~~l~r--~G~l~eA~~l~~~m 866 (1076)
.|++++-. ...+++|..-|+.+
T Consensus 240 ~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 240 DLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHccc
Confidence 44444432 23455555555555
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=95.96 E-value=0.051 Score=49.81 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCccchhhhhhhhhhc
Q 038364 602 NSLISGYCFKGLFVNAKKMLNQMEEEEI-KPDLVSWNSLVSGYSIW 646 (1076)
Q Consensus 602 n~lI~~~~~~g~~~~A~~lf~~M~~~g~-~pd~~t~~~Li~~y~k~ 646 (1076)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R 74 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKR 74 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc
Confidence 3445555556777777777777777777 77777777777666554
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.07 Score=57.67 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=85.5
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc---CCchHHHHHHHHHhcCCCCCchhHHHH
Q 038364 838 PTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIH---GHLEYAEIASRRLFKLEPCNSANYNLM 912 (1076)
Q Consensus 838 p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~---g~~e~A~~~~~~l~~l~P~~~~~y~~L 912 (1076)
-|.+.|.-|...|.+.|+.++|..-|.+. .+ .++...+..+..++... ....++..++++++.++|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 35889999999999999999999999886 33 34566777777775443 346789999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 913 MNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 913 ~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
+..+...|++.+|...++.|.+...+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876643
No 197
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=6.7 Score=47.52 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=67.5
Q ss_pred HHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038364 745 IDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGW 824 (1076)
Q Consensus 745 i~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~ 824 (1076)
+.-+..-|+..+|.++-.+.+-+|-..|---+.+++..+++++-+++-+.+.. .+-|.-...+|.+.|+.+||.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHh
Confidence 34445567777777777777777777777777777777777776665554431 233455567777777777777
Q ss_pred HHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHh
Q 038364 825 KYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRT 865 (1076)
Q Consensus 825 ~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~ 865 (1076)
+++.+.. |. .-.+.+|.+.|++.+|.++--+
T Consensus 765 KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 765 KYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 7765442 11 1356777777777777665433
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.71 E-value=0.72 Score=46.15 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=92.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCHH
Q 038364 800 FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-----FKPDAT 873 (1076)
Q Consensus 800 ~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-----~~pd~~ 873 (1076)
..|....-..|..+....|+..||...|++...- -+.-|....-.+..+....++..+|...+++. . -.||..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666666777788888888888888777641 23344556666677777778888888877775 2 234433
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
..+...+...|..+.|+..|+.++.--|. +..-......++++||.+||..-....
T Consensus 164 --Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 --LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred --HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34567788899999999999999988775 466667788899999988887655444
No 199
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.58 E-value=5.1 Score=50.95 Aligned_cols=153 Identities=13% Similarity=0.124 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHH
Q 038364 752 GNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA----CKNSGLVEEGWKYF 827 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a----~~~~g~~~eA~~~~ 827 (1076)
|++++|..-+.++. ...|+-.++--.+||.+.+|+.+ ++||...+.-+..+ |...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56666666655554 22344445555567777777766 35666655555444 44456666666555
Q ss_pred HHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 828 DSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIW--GALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 828 ~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~--~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+..-+ ..--+.+|-.+|++.+|+.+-.++....|...- ..|..-+...++.-+|-++.++... +
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d--- 1028 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-D--- 1028 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-C---
Confidence 54311 012345666677777777777776544444432 4566667777766666665555432 1
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 906 SANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 906 ~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+.--+..|+++-.|++|.++-..-
T Consensus 1029 ---~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ---HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 223355666777777777766554
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.55 E-value=5.5 Score=44.84 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=82.4
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHH
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEA 652 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A 652 (1076)
-|.-+...|....|.++-.+..-||..-|-..|.+|+..++|++-.++-.. +-.++-|-.++..|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 355556678888888888888888888898999999999998877765432 23568888889999999998888
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHh
Q 038364 653 LVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQ 695 (1076)
Q Consensus 653 ~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~ 695 (1076)
..+...+ ++..-+..|.+.|++.+|.+.-.+..
T Consensus 257 ~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 257 SKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 8888774 23566788888888888887755544
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.54 E-value=0.018 Score=48.65 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CchHHHHHHHHHhcCCC
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHG-HLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g-~~e~A~~~~~~l~~l~P 903 (1076)
+..|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777888888899999999888886 3445 4558888999999999 79999999999999887
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.51 E-value=0.14 Score=48.56 Aligned_cols=87 Identities=15% Similarity=-0.001 Sum_probs=61.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC---CchhHHHHHHHHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTM---PFKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC---NSANYNLMMNLLA 917 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m---~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~---~~~~y~~L~~~y~ 917 (1076)
+..++-..|+.++|..++++. +.... ...+-.+.+.++..|++++|+.++++..+-.|+ +......++..+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566667777777777664 21111 225556777888888888888888888887777 5566677788888
Q ss_pred HcCChHHHHHHHHHH
Q 038364 918 MSNRWEDVERLRHSM 932 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m 932 (1076)
..|+.+||.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 889999988877553
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.51 E-value=0.072 Score=58.07 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=57.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHH
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA----TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMM 913 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~ 913 (1076)
.|..-++.+.+.|++++|...|+.. ...|+. ..+..+..++...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666554 122332 345556666777777777777777777666654 34455567
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 038364 914 NLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 914 ~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.+|.+.|++++|.+++++..+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777644
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.44 E-value=1.3 Score=47.89 Aligned_cols=58 Identities=7% Similarity=-0.038 Sum_probs=33.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCChhhHHHHHHHHHhcC
Q 038364 469 ISSYTGLGYVDVAWSLFNKMNSSRIQPDIITW---NCLLSGHFTHGSYQNVLTLLRGMQSLG 527 (1076)
Q Consensus 469 I~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty---~~Li~~~~~~g~~~~Al~l~~~m~~~g 527 (1076)
...+.+.|++++|.+.|+++...-+.+ ...- -.+..++.+.+++++|...+++..+..
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 334455667777777777766654332 2221 234455666677777777777766654
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.40 E-value=1 Score=51.05 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=93.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCC---Ch----HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANK---TL----ASWNCMIMGFAI---YGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~---d~----~s~n~li~~~~~---~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
|+-.|-...+++...++.+.+... ++ ..--...-++.+ .|+.++|+.++..+....-.++..|+..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444577777777777777776643 11 111123344455 67888888888776655556666666555444
Q ss_pred HHh---------cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHH----HHHHHH---Hh-C------CCCC
Q 038364 814 CKN---------SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLD----EAWDFI---RT-M------PFKP 870 (1076)
Q Consensus 814 ~~~---------~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~----eA~~l~---~~-m------~~~p 870 (1076)
|-. ....++|.+.|.+. +.+.|+..+--.++.++..+|.-. +..++. .. . .-..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 321 22356677666654 344555433223334444444322 222222 11 1 1234
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
|-..+.+++.++.-.||.+.|.+++++++.+.|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 555668899999999999999999999999988754
No 206
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.30 E-value=0.12 Score=48.40 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=75.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHcCC
Q 038364 848 DLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS----ANYNLMMNLLAMSNR 921 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~----~~y~~L~~~y~~~G~ 921 (1076)
-+++..|++++|++.|.+. . .+.....||.-..+++-+|+.++|+.-+++++++.-+.. ..|+..+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999999886 2 345678999999999999999999999999999854332 348899999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 038364 922 WEDVERLRHSMDEVGV 937 (1076)
Q Consensus 922 ~~eA~~~~~~m~~~g~ 937 (1076)
.++|..-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999999887774
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.25 E-value=4.2 Score=41.70 Aligned_cols=194 Identities=22% Similarity=0.178 Sum_probs=132.3
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN-----KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLA 812 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~ 812 (1076)
...+......+...+.+..+...+..... .....+..+...+...++..++++.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 45566677777777777777777766532 33445666667777777788888888887764333322 1222222
Q ss_pred -HHHhcCCHHHHHHHHHHhhhcCCCCC----CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH
Q 038364 813 -ACKNSGLVEEGWKYFDSMSTDYNIIP----TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD--ATIWGALLGSCRI 884 (1076)
Q Consensus 813 -a~~~~g~~~eA~~~~~~m~~~~g~~p----~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd--~~~~~~Ll~a~~~ 884 (1076)
.+...|+.+++...+..... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 57788888888888887743 222 2233344444466778888888888776 33333 5677888888888
Q ss_pred cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 885 HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 885 ~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.++.+.|...+....+..|.....+..+...+...|+++++...+.+..+.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999999888876666777777777777788888888777543
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.09 E-value=0.031 Score=42.58 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999888877764
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.03 E-value=0.064 Score=45.70 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=51.4
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHH
Q 038364 848 DLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNL 911 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~ 911 (1076)
..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678889999999998887 3444 45577788888999999999999999999999987655433
No 210
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.01 E-value=0.31 Score=46.22 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=65.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHH
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDA--ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLG 851 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~ 851 (1076)
+..++-..|+.++|+.+|++..+.|..... ..+..+-+++...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456677889999999999999998877653 3566777788999999999999998876532111 1122223445677
Q ss_pred hcCCHHHHHHHHHh
Q 038364 852 KAGYLDEAWDFIRT 865 (1076)
Q Consensus 852 r~G~l~eA~~l~~~ 865 (1076)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877654
No 211
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.91 E-value=0.44 Score=46.98 Aligned_cols=91 Identities=12% Similarity=-0.011 Sum_probs=70.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSG 818 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g 818 (1076)
.+...+...|++++|.++|+-... .+..-|-.|...+...|++++|+..|..... +.||. .++-.+-.++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 455556778999999999986653 3456788888899999999999999999888 44554 56666777788889
Q ss_pred CHHHHHHHHHHhhhcCC
Q 038364 819 LVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 819 ~~~eA~~~~~~m~~~~g 835 (1076)
+.+.|++.|+......+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999988776533
No 212
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.91 E-value=0.088 Score=58.28 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDS---MSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-------P-FKPDAT 873 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~---m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-------~-~~pd~~ 873 (1076)
.|..|-+.|.-.|+++.|+...+. +.+++|-... ...++.+.+.+.-.|.++.|.+.++.. + -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555557788888776553 2233443322 345677788888888888888887763 1 112344
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcC----C--CCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKL----E--PCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l----~--P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...+|.+.|....+++.|+..+.+=+.+ + .....+|..|++.|...|.-+.|..+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667888888888888888887764432 2 12346788999999999998888887766544
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.89 E-value=0.37 Score=48.13 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=91.2
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC--Cc
Q 038364 832 TDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM---PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC--NS 906 (1076)
Q Consensus 832 ~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m---~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~--~~ 906 (1076)
++..+.|++.+-..|...+.+.|+..||...|++. .+.-|......+.++....++..+|...++.+.+-+|. .+
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 33466788888889999999999999999999987 46778889999999999999999999999999998875 46
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.....++..|...|+..+|+.-++.....
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 67889999999999999999999887554
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.84 E-value=0.36 Score=47.55 Aligned_cols=106 Identities=19% Similarity=0.297 Sum_probs=71.5
Q ss_pred HHhcCCHHHHHHHHHHhhhcCC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYN--IIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g--~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A 891 (1076)
....|+.+++...+..+...+. +-|+... ...+......++++- ..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456777777777777765442 1222111 122222333333321 23456677788899999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
...+++++.++|-+-..|..+..+|.+.|+..+|.+++++++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999874
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.65 E-value=1.2 Score=46.87 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=89.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC--CChHHH--------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSAN--KTLASW--------NCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTAL 810 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~s~--------n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~l 810 (1076)
+++|+..|.-..-.++-...|+.-.. ..+..| +.|+..+.-+|.+.-.+.++++.++..-+-+.+....|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 34555555544444444444443322 222233 56777777788888888899999886545566666777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH-----HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 038364 811 LAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC-----MVDLLGKAGYLDEAWDFIRTMPF--KPDATIWGALLGSCR 883 (1076)
Q Consensus 811 l~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~-----li~~l~r~G~l~eA~~l~~~m~~--~pd~~~~~~Ll~a~~ 883 (1076)
.+.-.+.|+++.|..+|+...+..+ ..+....+. +...|.-+.++.+|...+.+.+. ..|+..-|+-.-...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 7777889999999999987765422 222222222 22333444455555555555431 112222222222222
Q ss_pred HcCCchHHHHHHHHHhcCCCCC
Q 038364 884 IHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
-.|+...|.+..+.+.+..|..
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCcc
Confidence 3455555555555555555543
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.28 Score=55.01 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEE
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIV 952 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~ 952 (1076)
.++..|...|.+.+++..|+....+.++++|+|..+.+--+.+|...|.++.|...|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 356667777889999999999999999999999999999999999999999999999999542
Q ss_pred EEEEeCCCCCcCcHHHHHHHHHHHHHHHH
Q 038364 953 HVFSAEGAPHPATGEIYFELYHLVSEMKK 981 (1076)
Q Consensus 953 ~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 981 (1076)
.|....|..++..+.+++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 35556677677666665554
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=17 Score=44.25 Aligned_cols=308 Identities=10% Similarity=0.112 Sum_probs=166.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---cHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 038364 365 NEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGA---FHEGKQIHGYVLKSALESNLSVCNCLISMY 441 (1076)
Q Consensus 365 n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y 441 (1076)
..+|.-++..+.+..|+++-..|...-..- ...|.....-..+..+ -+.+..|-.++.. -.. +...|..+..--
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~~-~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KLT-PGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cCC-CceeHHHHHHHH
Confidence 456778888888999988887775332222 4445555544444422 2222222222211 122 333455555555
Q ss_pred HhCCChHHHHHHHHhcCCC--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCC----------CC-ChhhHHH
Q 038364 442 SRNNKLELATRVFDSMKDH--------NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRI----------QP-DIITWNC 502 (1076)
Q Consensus 442 ~k~g~~~~A~~lf~~m~~~--------d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~----------~p-d~~ty~~ 502 (1076)
..+|+.+.|+++.+.=+.. +.--+..-+.-..+.|+.+-...++..|...-. .| ....|--
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~ 597 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ 597 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence 6789999999888764321 122345556666777777766666655543210 00 1111111
Q ss_pred HHH--------HHHhcCChhhHHHHHHHHH------hcCCCCCcccHHHHHHHHHhcCchHHHHHHH-HHH--H------
Q 038364 503 LLS--------GHFTHGSYQNVLTLLRGMQ------SLGFRPNGSSVSVVLQAVTELRLLKYGRESH-GYI--L------ 559 (1076)
Q Consensus 503 Li~--------~~~~~g~~~~Al~l~~~m~------~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~-~~~--~------ 559 (1076)
+++ .+.+.++-.+++.-|..=. ..|..|+ ....-++|++......+.+.. +.+ +
T Consensus 598 ~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L 674 (829)
T KOG2280|consen 598 FMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL 674 (829)
T ss_pred HHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 111 1111222222222111100 0122222 333344555444322211111 111 1
Q ss_pred --HcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchh
Q 038364 560 --RNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWN 637 (1076)
Q Consensus 560 --~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~ 637 (1076)
+.|....-.+.+--+.-+..-|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-..+. ..+-|-
T Consensus 675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 122222222233334455667888888888888888888888888888888888887776655543 467777
Q ss_pred hhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHH
Q 038364 638 SLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQ 693 (1076)
Q Consensus 638 ~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~ 693 (1076)
-.+..|.+.|+.++|.+++.+.... .-.+.+|.+.|++.+|.++--+
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 8888888888888888888776321 1567788888888887776444
No 218
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.25 E-value=12 Score=42.20 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=57.4
Q ss_pred ccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC
Q 038364 533 SSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKG 612 (1076)
Q Consensus 533 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g 612 (1076)
.+.+..+.-|...|....|.++-... . -||...|-.-+.+|++.+++++-.+.... .++++.|-..+..+.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCC
Confidence 34444555555555555554443222 1 24555556666666666666655554432 345566666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHH
Q 038364 613 LFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVI 655 (1076)
Q Consensus 613 ~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~l 655 (1076)
+..+|...... +++..-+.+|.++|++.+|.+.
T Consensus 252 ~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHH
Confidence 66666655544 2224455566666666665544
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.18 E-value=0.061 Score=46.60 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcC----CCCC---chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKL----EPCN---SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l----~P~~---~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
+++.+...+...|++++|+..+++++++ .+++ ..++..++.+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666777777777777666543 2222 3457888888888888888888887753
No 220
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.12 E-value=0.7 Score=50.43 Aligned_cols=92 Identities=13% Similarity=0.063 Sum_probs=55.7
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCCc
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPD----ATIWGALLGSCRIHGHL 888 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd----~~~~~~Ll~a~~~~g~~ 888 (1076)
...|++++|...|+.+.+.+.-.+- ...+..+...|...|++++|...|+++. ..|+ ...|..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3445666666666665554311110 1244556666666677777766666651 1122 33455556667788899
Q ss_pred hHHHHHHHHHhcCCCCCc
Q 038364 889 EYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~ 906 (1076)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 999999999998888763
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.74 E-value=0.7 Score=53.28 Aligned_cols=153 Identities=19% Similarity=0.145 Sum_probs=95.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038364 781 IYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAW 860 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~ 860 (1076)
+..+.++-+++-++.++ +.||..+-..+| |--.+..+.|+.+++++..+. | ...+.. -......|. ..
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~-s~~~~~~g~---~~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGK-SQFLQHHGH---FW 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhch-hhhhhcccc---hh
Confidence 34556666677777776 678887655544 233455688899988887653 1 000000 000001111 11
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 861 DFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC--NSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 861 ~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~--~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
+.+.+-...|-..+=..|...+++.|+.++|++.++.+++..|. +......|++.|-..+++.|+..++.+-.+..++
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111112223334455777788999999999999999987664 4557888999999999999999999998766666
Q ss_pred cCcceEE
Q 038364 939 SVLVWSW 945 (1076)
Q Consensus 939 ~~~~~sw 945 (1076)
+...++|
T Consensus 328 kSAti~Y 334 (539)
T PF04184_consen 328 KSATICY 334 (539)
T ss_pred chHHHHH
Confidence 6554444
No 222
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.63 E-value=0.52 Score=45.12 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHh--------------hhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC---
Q 038364 804 AITFTALLAACKNSGLVEEGWKYFDSM--------------STDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--- 866 (1076)
Q Consensus 804 ~~t~~~ll~a~~~~g~~~eA~~~~~~m--------------~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--- 866 (1076)
..++..++-++++.|+++....+.+.. .......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344555555555555555555555433 112245567777778888888888888888777664
Q ss_pred -CCCCCHHHHHHHHHHHHHcCC
Q 038364 867 -PFKPDATIWGALLGSCRIHGH 887 (1076)
Q Consensus 867 -~~~pd~~~~~~Ll~a~~~~g~ 887 (1076)
+++-+..+|..|+.-+...-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhcC
Confidence 455557788888866655443
No 223
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.60 E-value=3.6 Score=43.62 Aligned_cols=139 Identities=14% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC----CChhHHHHHH----
Q 038364 398 TIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD----HNLSSWNSMI---- 469 (1076)
Q Consensus 398 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~lI---- 469 (1076)
...+++...-..+.+.-....+..+++...+.++.....|..+-...||.+.|...|+.+.+ -|-.+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33455555555666666667777777777777888888888888888999999888886542 1222333322
Q ss_pred -HHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHH
Q 038364 470 -SSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVL 539 (1076)
Q Consensus 470 -~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll 539 (1076)
..|.-..++.+|...|.+....+.. |.+.-|.-.-+..-.|+..+|++.++.|.+.- |...+-.+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhHH
Confidence 3455567788888888888877665 77777776667777788999999999988765 6665555444
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.22 E-value=5.5 Score=37.84 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=81.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038364 780 AIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA 859 (1076)
...|..++..++..+.... .+..-++-++.-...+-+-+-..+.++++-+-+.+.|-. ....++..|.+.|...|
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHH-
Confidence 3456777777777776652 233334444443334444455566666664443333321 12234555555544333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 860 WDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 860 ~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
-....+++....|.-|+-.+++..+++-+..+|+...-++++|.+.|...+|.+++++.=++|++
T Consensus 88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33455677788899999999999888655556788999999999999999999999999998875
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.13 E-value=6.5 Score=41.18 Aligned_cols=151 Identities=14% Similarity=0.143 Sum_probs=69.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCC
Q 038364 368 IMVKLRNEKWENAIKLFREMQFSSA--KAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNN 445 (1076)
Q Consensus 368 i~~~~~~g~~~eAl~lf~~M~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g 445 (1076)
...+.+.|++.+|++.|+++...-. +--......+..++-+.|+.+.|...++..++.-+.....-+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445566777777777777664311 11122334455566666677777666666665543322222222222221111
Q ss_pred ChHHHHHHHHhcCCCCh-------hHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 038364 446 KLELATRVFDSMKDHNL-------SSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLT 518 (1076)
Q Consensus 446 ~~~~A~~lf~~m~~~d~-------~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~ 518 (1076)
... ..+ ...+|. ..+..+|.-|=.+....+|......+.+. =...--.+...|.+.|.+..|..
T Consensus 92 ~~~---~~~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIP---GIL--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHH---HHH---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHH
T ss_pred hCc---cch--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHH
Confidence 110 000 111221 13455566666666666665555554332 00011124556777778888877
Q ss_pred HHHHHHhcC
Q 038364 519 LLRGMQSLG 527 (1076)
Q Consensus 519 l~~~m~~~g 527 (1076)
-++.+.+.-
T Consensus 163 r~~~v~~~y 171 (203)
T PF13525_consen 163 RFQYVIENY 171 (203)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHC
Confidence 777777664
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.09 E-value=0.38 Score=51.03 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=48.7
Q ss_pred HHHHHHhhcC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcC
Q 038364 585 NAQEVFDNMK--NRNIVAWNSLISGYCFK-----GLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWG 647 (1076)
Q Consensus 585 ~A~~lf~~m~--~~d~~~~n~lI~~~~~~-----g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g 647 (1076)
..++.|.... ++|-.+|-+++..+... +..+-....++.|.+-|++.|..+|+.||+.+-|..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk 121 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK 121 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc
Confidence 4456777776 57888888888877654 567777778888999999999999999988876543
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.97 E-value=0.45 Score=50.48 Aligned_cols=97 Identities=12% Similarity=0.245 Sum_probs=67.7
Q ss_pred HHHHHHhcC--CCChhHHHHHHHHHHhC-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----------
Q 038364 450 ATRVFDSMK--DHNLSSWNSMISSYTGL-----GYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHG----------- 511 (1076)
Q Consensus 450 A~~lf~~m~--~~d~~s~n~lI~~~~~~-----g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g----------- 511 (1076)
.++.|...+ ++|-.+|-+++..+... ++++-....++.|.+-|+..|..+|+.||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677776 78888999999888654 567777788899999999999999999998765532
Q ss_pred -----ChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038364 512 -----SYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELR 546 (1076)
Q Consensus 512 -----~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g 546 (1076)
+-+-+++++++|...|+.||..+-..+++++.+.+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 12334555555555555555555555555554443
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.86 E-value=0.11 Score=44.99 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM-------P-FKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m-------~-~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..+++.+++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444444555555555555444443 1 1122 346666777777778888888777776643
No 229
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=8 Score=43.75 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=26.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038364 777 MGFAIYGNGKEAILLFHELLET---GFQPDAITFTALLAACKNSGLVEEGWKYFDSM 830 (1076)
Q Consensus 777 ~~~~~~g~~~~Al~l~~~M~~~---g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m 830 (1076)
+-..+.|++.+|.+.|.+.+.. +++|+...|.....+..+.|+.++|+.--+..
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 3344556666666666665541 12222233433334455566666665554443
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=92.70 E-value=3.9 Score=47.33 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=93.9
Q ss_pred HHH--HHHHHHHHHc-----CCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHhh
Q 038364 770 ASW--NCMIMGFAIY-----GNGKEAILLFHELL-ETGFQPDAITFTALLAACKN----------SGLVEEGWKYFDSMS 831 (1076)
Q Consensus 770 ~s~--n~li~~~~~~-----g~~~~Al~l~~~M~-~~g~~Pd~~t~~~ll~a~~~----------~g~~~eA~~~~~~m~ 831 (1076)
..| ..++.|.... ...+.|+.+|.+.. ...+.|+-..-...+.-|.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5556555542 13456888898888 22367776543333332221 223445555555554
Q ss_pred hcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 832 TDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA-TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 832 ~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
+ +.| |+.....+..++.-.|+++.|..+|++. ...||. .+|......+...|+.++|.+.+++.++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 223 3445556666667777788888888776 355554 366666666777888888888888888888876544
Q ss_pred HH--HHHHHHHHcCChHHHHHHHHH
Q 038364 909 YN--LMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 909 y~--~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
-. ..+++|+.. .+++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 33 334455543 45667666643
No 231
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.61 E-value=6.3 Score=38.36 Aligned_cols=130 Identities=9% Similarity=0.007 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHH
Q 038364 462 LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQA 541 (1076)
Q Consensus 462 ~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a 541 (1076)
...-..+|..+.+.+.......+++.+...+. .+...+|.++..|++.+ .++.++.++. ..+.+....+++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHH
Confidence 33445677888888889999999999888774 47888999999998764 3444455542 1566777778888
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhC-CCHHHHHHHHhhcCCCCHhHHHHHHHHHHh
Q 038364 542 VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKN-DCLQNAQEVFDNMKNRNIVAWNSLISGYCF 610 (1076)
Q Consensus 542 ~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~-g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~ 610 (1076)
|.+.+.++++..++..+.. +...++.+.+. ++.+.|.+.+.+- .+...|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 8888887777776655421 22334444444 6777777777763 355567766665543
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.55 E-value=14 Score=37.79 Aligned_cols=219 Identities=20% Similarity=0.121 Sum_probs=142.4
Q ss_pred CChhHHHHHHHHHhhcCCC-CChhhHHHHHHHHhcCCCchhHHHHHHHHHHc-CCCCChhhHHHHHHHHhhcCCHHHHHH
Q 038364 682 ENYRESLKFFIQMQQEDIK-PNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN-GFIKDAYVATGLIDMYSKSGNLKSARE 759 (1076)
Q Consensus 682 g~~~eAl~l~~~m~~~gi~-pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~ 759 (1076)
+....+...+......... .....+..........+.+..+...+...... ........+..+...+...++.+.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444432211 12344555555556666666666665555442 233445556666777777777888888
Q ss_pred HHHhcCCC--C-hHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 760 VFRKSANK--T-LASWNCMIM-GFAIYGNGKEAILLFHELLETGFQP----DAITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 760 vf~~m~~~--d-~~s~n~li~-~~~~~g~~~~Al~l~~~M~~~g~~P----d~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
.+...... + ...+..... .+...|+.++|...|++... ..| ....+......+...++.+++...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 88776642 2 123333333 78889999999999999855 444 22344444444677889999999998887
Q ss_pred hcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 832 TDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 832 ~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.. ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...++.+.+...+++..+..|.
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 53 222 3567778888889999999999988886 34454 456666666666777899999999999998886
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.21 E-value=0.33 Score=46.43 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNS 817 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~ 817 (1076)
..++.+++-++++.|+++....+.+..-.-|+ .+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 34556666777777777777766654322111 11111111 112345789999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
|++..|.++.+...+.|+++-+...|..|+.-.
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999877777888777643
No 234
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.16 E-value=6.3 Score=41.27 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=9.8
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 038364 607 GYCFKGLFVNAKKMLNQMEEE 627 (1076)
Q Consensus 607 ~~~~~g~~~~A~~lf~~M~~~ 627 (1076)
.+.+.|++++|.+.|+++...
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~ 34 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDR 34 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 344445555555555555443
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=91.87 E-value=1.9 Score=49.76 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHh---------cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 038364 819 LVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGK---------AGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 819 ~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r---------~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g 886 (1076)
..++|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .. +-|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788899998855567777 4455555443321 23445666666665 33 446777777777778888
Q ss_pred CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 887 HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+++.|...|+++..++|+.+..|...+.+..-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999985443
No 236
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.84 E-value=28 Score=39.89 Aligned_cols=436 Identities=14% Similarity=0.158 Sum_probs=224.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChh---HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038364 428 ESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLS---SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLL 504 (1076)
Q Consensus 428 ~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~---s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li 504 (1076)
+.|...|-.||.-|...|..++.++++++|..|-.+ .|..-|++=....+++....+|.+-+..... ...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 356788999999999999999999999999887554 7999999888888999999999888776543 55566555
Q ss_pred HHHHhcCCh------hhHHHHHHHH-HhcCCCCCcccH----HHHHHHHHhcCchHH------HHHHHHHHHHcCCCCch
Q 038364 505 SGHFTHGSY------QNVLTLLRGM-QSLGFRPNGSSV----SVVLQAVTELRLLKY------GRESHGYILRNGLDYDL 567 (1076)
Q Consensus 505 ~~~~~~g~~------~~Al~l~~~m-~~~gi~pd~~t~----~~ll~a~~~~g~~~~------a~~i~~~~~~~g~~~d~ 567 (1076)
.--.+.+.. ....+.|+-. .-.++.|-...| ...+...-..+.+++ .+.++..++..-
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP----- 191 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP----- 191 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc-----
Confidence 544433211 1112222222 234455544332 222222223333332 222222222211
Q ss_pred hHHHHHHHHHHhCCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCC----Cccchhh--
Q 038364 568 YVGTSLMDMYVKNDCLQNAQEVFDNMKN-RNIVAWNSLISGYCFKGLFVNAKKMLNQMEE--EEIKP----DLVSWNS-- 638 (1076)
Q Consensus 568 ~v~~aLi~~y~k~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~--~g~~p----d~~t~~~-- 638 (1076)
.|++++-++-|+.... -|..|-.-.+. -..--+-.|...++++.. .|++. +..|+|-
T Consensus 192 ------------~~nleklW~dy~~fE~e~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 192 ------------MGNLEKLWKDYENFELELNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred ------------cccHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccc
Confidence 1233333322222111 00000000000 000112234444444432 12221 1112221
Q ss_pred ---------hhhhhhh-----cCCh--hHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC
Q 038364 639 ---------LVSGYSI-----WGQS--KEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN 702 (1076)
Q Consensus 639 ---------Li~~y~k-----~g~~--~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd 702 (1076)
.|.--.. .|++ +...-+|++.... +.-....|----.-+...++-+.|+....+-.. ..|.
T Consensus 258 r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps 334 (660)
T COG5107 258 RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS 334 (660)
T ss_pred ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc
Confidence 1111000 0111 1111122222211 011222333333334456666677766554322 2232
Q ss_pred hhhHHHHHHHHhcC-CCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh---------cCCHHHHHHHHHhcCCCChHHH
Q 038364 703 STTMSSLLQTCGGL-GLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK---------SGNLKSAREVFRKSANKTLASW 772 (1076)
Q Consensus 703 ~~t~~~lL~a~~~~-g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k---------~G~~~~A~~vf~~m~~~d~~s~ 772 (1076)
++..++-|-.. .+-+.....++.+.+ .|..-|.+ -|+.+...++.-.-.++=...|
T Consensus 335 ---L~~~lse~yel~nd~e~v~~~fdk~~q-----------~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~ 400 (660)
T COG5107 335 ---LTMFLSEYYELVNDEEAVYGCFDKCTQ-----------DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVF 400 (660)
T ss_pred ---hheeHHHHHhhcccHHHHhhhHHHHHH-----------HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHH
Confidence 33333333222 222222232332221 11111111 1223222332222222344577
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccH-HHHHHHH
Q 038364 773 NCMIMGFAIYGNGKEAILLFHELLETG-FQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHY-SCMVDLL 850 (1076)
Q Consensus 773 n~li~~~~~~g~~~~Al~l~~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y-~~li~~l 850 (1076)
...++.-.+..-.+.|..+|-+..+.| +.++...+++.+.-++ .|+..-|.++|+.=...+ ||...| .-.++-+
T Consensus 401 C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fL 476 (660)
T COG5107 401 CVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHHHH
Confidence 888888888878888888999998888 5667777777776544 477778888887655432 444433 4566777
Q ss_pred HhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 851 GKAGYLDEAWDFIRTM--PFKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m--~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
.+-++-+.|..+|++. .+..+ ..+|..++.--..-|+...+..+-+++.++-|+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 8888888899888865 13333 4588888888888899888888888888888875
No 237
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.80 E-value=28 Score=39.86 Aligned_cols=80 Identities=11% Similarity=0.201 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 327 FDVHLKCALMNFYGKCRDVESANKLFSEVSDLED---DLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKML 403 (1076)
Q Consensus 327 ~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d---~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll 403 (1076)
.|...|-.||.-|...|.++.-++++++|.. +- ..+|..-|++-....++.....+|.+-...... ...|..-|
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 4667788888888888888888888888876 52 346888888777777888888888777665433 33344444
Q ss_pred HHHHcc
Q 038364 404 QACAKV 409 (1076)
Q Consensus 404 ~a~~~~ 409 (1076)
.--.+.
T Consensus 117 ~YIRr~ 122 (660)
T COG5107 117 EYIRRV 122 (660)
T ss_pred HHHHhh
Confidence 433333
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.77 E-value=0.62 Score=53.62 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=60.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA----TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
...++.+..+|.+.|++++|...|++. .+.|+. ..|..+..+|...|+.++|+..+++++++.+. .|..+.+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~~ 151 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTILN 151 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHHh
Confidence 456777777888888888888888774 566664 35888888888888888888888888876321 1211111
Q ss_pred --HHHHcCChHHHHHHHHHHHhCCC
Q 038364 915 --LLAMSNRWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 915 --~y~~~G~~~eA~~~~~~m~~~g~ 937 (1076)
-+......++..++++.++.-|.
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCC
Confidence 11222334456666666655554
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=3.1 Score=47.04 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=73.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
.+..+.-.|.+.+++.+|++..++. .. ++|.-..--=..||...|+++.|+..|+++++++|+|-.+-.-|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4555666778888888888887775 33 345556666678899999999999999999999999988888888888887
Q ss_pred CChHHH-HHHHHHHHh
Q 038364 920 NRWEDV-ERLRHSMDE 934 (1076)
Q Consensus 920 G~~~eA-~~~~~~m~~ 934 (1076)
.+..+. .+++..|-.
T Consensus 339 ~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 776555 778888843
No 240
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.71 E-value=0.55 Score=46.23 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH-----hcCCCCCcc
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQ-----SLGFRPNGS 533 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~-----~~gi~pd~~ 533 (1076)
....++..+...|++++|.++.+++....+- |...|..+|.+|...|+..+|++.|+++. +.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3445556666777777777777777766555 67777777777777777777777777664 346666643
No 241
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.52 E-value=5.4 Score=38.85 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=44.0
Q ss_pred hhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcC
Q 038364 637 NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGL 716 (1076)
Q Consensus 637 ~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~ 716 (1076)
..++..+...+.......+++.+...+ ..+....|.+|..|++.+ .++.++.++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 445555655666666666666666554 245566666777666543 3344444442 12334444556666555
Q ss_pred CCchhHHHHH
Q 038364 717 GLLQNGKEIH 726 (1076)
Q Consensus 717 g~~~~a~~i~ 726 (1076)
+.++++..++
T Consensus 83 ~l~~~~~~l~ 92 (140)
T smart00299 83 KLYEEAVELY 92 (140)
T ss_pred CcHHHHHHHH
Confidence 5544444444
No 242
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=44 Score=41.09 Aligned_cols=145 Identities=13% Similarity=0.210 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 038364 431 LSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH 510 (1076)
Q Consensus 431 ~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~ 510 (1076)
..++..+|+.|.-.|++++|-.+.-.|...+..-|---+.-++..++.... +.-++....+.+...|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh---hccCCCCCcccCchHHHHHHHHHHH-
Confidence 346677777777777777777777777777777777777666666655433 2233333333456667776666665
Q ss_pred CChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 038364 511 GSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVF 590 (1076)
Q Consensus 511 g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf 590 (1076)
.+...-.++.++.. ++.+.-..++++. ..++.+. -+ +..+...|...|...++++.|..++
T Consensus 468 ~~~~~F~e~i~~Wp-----~~Lys~l~iisa~------------~~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~y 528 (846)
T KOG2066|consen 468 SDVKGFLELIKEWP-----GHLYSVLTIISAT------------EPQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIY 528 (846)
T ss_pred HHHHHHHHHHHhCC-----hhhhhhhHHHhhc------------chHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHH
Confidence 22222222222211 1111111111110 1111111 01 1223334888899999999999888
Q ss_pred hhcCCCCH
Q 038364 591 DNMKNRNI 598 (1076)
Q Consensus 591 ~~m~~~d~ 598 (1076)
-...++++
T Consensus 529 lklk~~~v 536 (846)
T KOG2066|consen 529 LKLQDKDV 536 (846)
T ss_pred HhccChHH
Confidence 87776544
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.04 E-value=28 Score=38.39 Aligned_cols=19 Identities=5% Similarity=-0.319 Sum_probs=12.9
Q ss_pred HHHHHcCCchHHHHHHHHH
Q 038364 880 GSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l 898 (1076)
..+.+.++++.|...++-.
T Consensus 254 ~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHhhcCHHHHHHHHHHH
Confidence 3456677788887777754
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.69 E-value=1.5 Score=47.16 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C---CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM----P---FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLM 912 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m----~---~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L 912 (1076)
|+.-++. .+.|++.+|..-|... | ..|+..-| |..++...|+++.|...|..+.+-.|++ ++.+.-|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444433 3556666666655553 1 34555555 6677777777777777777777655544 5668888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhC
Q 038364 913 MNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 913 ~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+.+..+.|+-++|..++++..++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 88888888888888888887544
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.45 E-value=2.2 Score=41.43 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 850 LGKAGYLDEAWDFIRTM----PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m----~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
..+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 34566667776666665 2222 22345567778888888888888888888888877643
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.39 E-value=0.33 Score=34.28 Aligned_cols=32 Identities=22% Similarity=0.132 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.+|..+..++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888888888888888886
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.13 E-value=15 Score=42.74 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHH--HHHHHHHHHHHc
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-F-KPDAT--IWGALLGSCRIH 885 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~-~pd~~--~~~~Ll~a~~~~ 885 (1076)
+...+.+.|+.+||.+.|.+|.+++...........|++.|...++++|+..++.+-. + -|... .|++.+--.+.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 3334455666666666666665543211122234456666666666666666666653 1 12222 344444333333
Q ss_pred CCc---------------hHHHHHHHHHhcCCCCC
Q 038364 886 GHL---------------EYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 886 g~~---------------e~A~~~~~~l~~l~P~~ 905 (1076)
++. ..|.++..++.+.+|.-
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 321 23557777877777764
No 248
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.06 E-value=56 Score=40.23 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChH
Q 038364 569 VGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFV 615 (1076)
Q Consensus 569 v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~ 615 (1076)
++..+|+-|.-.|++++|-...-.|...+..-|---+..++..++..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 45556666666666666666666666666666655555555555443
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.99 E-value=6.9 Score=42.53 Aligned_cols=119 Identities=11% Similarity=0.040 Sum_probs=79.5
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHHcCCchH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGAL---LGSCRIHGHLEY 890 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~L---l~a~~~~g~~e~ 890 (1076)
....|+..++..+|+..... ..-+...-..|+..|...|+.++|..++..+|..-...-|..+ +....+..+..+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 45567777788877777653 1222455667788888888888888888888754444444331 222333333333
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.. .+++-+.-+|+|...-..|+..|-..|+.++|.+.+-.+..+
T Consensus 222 ~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 234445678999999999999999999999999887777544
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.92 E-value=54 Score=42.33 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=47.7
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCChhh--HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 038364 676 SGSLQNENYRESLKFFIQMQQEDIKPNSTT--MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGN 753 (1076)
Q Consensus 676 ~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t--~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~ 753 (1076)
.+|..+|++++|+.+-.+|.. .-|... -..|.+-+...++.-+|-++....... ..--+..|++.-.
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhH
Confidence 344455777777777777632 122222 134555555566655555554433221 2335567888888
Q ss_pred HHHHHHHHHhcCCCChH
Q 038364 754 LKSAREVFRKSANKTLA 770 (1076)
Q Consensus 754 ~~~A~~vf~~m~~~d~~ 770 (1076)
|++|.++-......|.+
T Consensus 1042 ~~eAlrva~~~~~~d~i 1058 (1265)
T KOG1920|consen 1042 WEEALRVASKAKRDDII 1058 (1265)
T ss_pred HHHHHHHHHhcccchHH
Confidence 88888887665544443
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.83 E-value=0.53 Score=33.07 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
..|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888764
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.61 E-value=3.8 Score=48.29 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g 886 (1076)
...++.-+-+.|..+.|.++-..-. .-.++..+.|+++.|.++.++. ++...|..|......+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKEL---DDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCCC---STHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHcC
Confidence 4445555666677777766533322 2245666777777777766654 36667777777777777
Q ss_pred CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 887 HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+++.|++++++.- -+..|.-+|...|+-+.-.++-+...++|
T Consensus 362 ~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7777777777652 35666777777777666666655555444
No 253
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=89.54 E-value=14 Score=41.77 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=25.3
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCchHHHHHHHHH
Q 038364 507 HFTHGSYQNVLTLLRGMQSLGFRPNGS----SVSVVLQAVTELRLLKYGRESHGY 557 (1076)
Q Consensus 507 ~~~~g~~~~Al~l~~~m~~~gi~pd~~----t~~~ll~a~~~~g~~~~a~~i~~~ 557 (1076)
+++.|+...-+.+|+...+.|- -|-. .|+.+-+++.-++++++|.+.|..
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 3444555555555555544442 1222 233444555666677777776653
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.14 E-value=9.1 Score=42.47 Aligned_cols=115 Identities=11% Similarity=0.036 Sum_probs=55.1
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCC--CCC--cccHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHH-----HH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNI--IPT--IEHYSCMVDLLGKAGYLDEAWDFIRTM-------PFKPDATIW-----GA 877 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~--~p~--~~~y~~li~~l~r~G~l~eA~~l~~~m-------~~~pd~~~~-----~~ 877 (1076)
..-.+.++++.+.|+...+--.- .|. ..+|..|...|++-.++++|.-+..+. .+..-..-| ..
T Consensus 132 hlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyh 211 (518)
T KOG1941|consen 132 HLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYH 211 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHH
Confidence 33344456666666655431111 111 235666666666666666654443332 221111122 22
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCC--CC----CchhHHHHHHHHHHcCChHHHHHH
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLE--PC----NSANYNLMMNLLAMSNRWEDVERL 928 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~--P~----~~~~y~~L~~~y~~~G~~~eA~~~ 928 (1076)
+.-+++..|..-.|.+..+++.++. .. ......+++++|...|+.|.|..-
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 3345666666666666666655431 11 122344566666666665544433
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=20 Score=37.87 Aligned_cols=199 Identities=10% Similarity=0.060 Sum_probs=103.3
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh--HHHHHHHHHHHHcC
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTL--ASWNCMIMGFAIYG 783 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~--~s~n~li~~~~~~g 783 (1076)
|.....++....++++++..+....+. .+.+...+. ....++.|.-+.++|.+-+. ..|+--+..|..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 444445666677777777755555431 222221111 11223334444444443221 23455667788888
Q ss_pred CHHHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038364 784 NGKEAILLFHELLE--TGFQPDAI--TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 784 ~~~~Al~l~~~M~~--~g~~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA 859 (1076)
..+-|-..+++.-+ ++++||.. .|.--+......++...| .+.|.....+|.|-.+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence 87776655555432 24556553 122222222222222222 23444556677788888888
Q ss_pred HHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhcC----CCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 860 WDFIRTMP-------FKPDA-TIWGALLGSCRIHGHLEYAEIASRRLFKL----EPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 860 ~~l~~~m~-------~~pd~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l----~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
-..|.+-. .-|+. ..+.+.+-.+....|+..|++.++.-.++ .|++..+...|...| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 77666542 12222 13444455556667888888888876554 455555555566655 4566676665
Q ss_pred HH
Q 038364 928 LR 929 (1076)
Q Consensus 928 ~~ 929 (1076)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 54
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.81 E-value=71 Score=39.70 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=103.5
Q ss_pred HHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHH----HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038364 334 ALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIM----VKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKV 409 (1076)
Q Consensus 334 ~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~----~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 409 (1076)
.-+++..+...++.|..+-..-.. |...-..+.. -+-+.|++++|..-|-+-... +.| ..+++-+-..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 345566666667777766654432 2222222222 345689999998888765421 122 2334444444
Q ss_pred CCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCChHHHHHHHHHH
Q 038364 410 GAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNL-SSWNSMISSYTGLGYVDVAWSLFNKM 488 (1076)
Q Consensus 410 g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~-~s~n~lI~~~~~~g~~~~A~~lf~~M 488 (1076)
.....--..++.+.+.|+... .--+.|++.|.|.++.+.-.+..+....-.. +-....+..+-+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 444555566777788887643 3356799999999999988887777662211 13455666777777777776665544
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 038364 489 NSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQ 524 (1076)
Q Consensus 489 ~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~ 524 (1076)
.. .... +--.+-..+++++|++.+..|.
T Consensus 490 ~~-----he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 490 KK-----HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred cc-----CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 32 1222 2222345678888888888774
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.73 E-value=14 Score=44.07 Aligned_cols=114 Identities=20% Similarity=0.099 Sum_probs=73.6
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCcccHHH-HHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCCch
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPTIEHYSC-MVDLLGKAGYLDEAWDFIRTMPF------KPDATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~~~~y~~-li~~l~r~G~l~eA~~l~~~m~~------~pd~~~~~~Ll~a~~~~g~~e 889 (1076)
....+++.++++.+.++| |+...|.. -..++...|++++|.+.|++... +-....+--+...+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 455677777777776653 55444432 23556667788888887776421 111233344555667788899
Q ss_pred HHHHHHHHHhcCCCCCchh-HHHHHHHHHHcCCh-------HHHHHHHHHHH
Q 038364 890 YAEIASRRLFKLEPCNSAN-YNLMMNLLAMSNRW-------EDVERLRHSMD 933 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P~~~~~-y~~L~~~y~~~G~~-------~eA~~~~~~m~ 933 (1076)
+|...+.++.+...-.... ++..+-.|...|+. ++|.+++++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9999998888866554444 34556677778888 78888877763
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.60 E-value=19 Score=36.26 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=69.0
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHc
Q 038364 653 LVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN 732 (1076)
Q Consensus 653 ~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~ 732 (1076)
.++++.+.+.++.|+...|..+|+.+.+.|++.....+ .+.++-+|.......+-.... ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 35566666778888888999999999999886654444 445567776665555433322 223334433333322
Q ss_pred -CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Q 038364 733 -GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGK 786 (1076)
Q Consensus 733 -g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~ 786 (1076)
+ ..+..+++.+...|++-+|.+..+.....+.+.-..++.+-.+.++..
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHH
Confidence 1 123445566666677777766666544333333334444444444433
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.09 E-value=46 Score=38.08 Aligned_cols=26 Identities=12% Similarity=0.035 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
..+..+..+..-.|+.++|.+..++|
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556777777888888888888887
No 260
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.06 E-value=25 Score=35.34 Aligned_cols=124 Identities=9% Similarity=0.091 Sum_probs=68.9
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHc
Q 038364 482 WSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRN 561 (1076)
Q Consensus 482 ~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 561 (1076)
.+..+.+.+.++.|+...|..+|..+.+.|++. .+..+...++-+|+......+-.... ....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 456666777889999999999999999999754 45566667777887766655533322 122222222222221
Q ss_pred -CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHH
Q 038364 562 -GLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVN 616 (1076)
Q Consensus 562 -g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~ 616 (1076)
+. .+..+++.+...|++-+|.+..+....-+...-..++.+-.+.++...
T Consensus 88 L~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~l 138 (167)
T PF07035_consen 88 LGT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQL 138 (167)
T ss_pred hhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHH
Confidence 11 133444555556666666665555433333333444444444444333
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.02 E-value=6.4 Score=46.38 Aligned_cols=131 Identities=14% Similarity=0.094 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHh
Q 038364 600 AWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSL 679 (1076)
Q Consensus 600 ~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~ 679 (1076)
-.+.++.-+-+.|..+.|+++-.+-. .-.+...++|+++.|.++-++. ++...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35666677777777777777654432 1234556788888888776554 36678888888888
Q ss_pred cCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 038364 680 QNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSARE 759 (1076)
Q Consensus 680 ~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 759 (1076)
+.|+++-|.+.|.+..+ |..|+--+...|+.+.-.++.....+.|- +|.....+.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 88998888888888743 45555566667777776666666655432 3333344444566666555
Q ss_pred HHHh
Q 038364 760 VFRK 763 (1076)
Q Consensus 760 vf~~ 763 (1076)
++.+
T Consensus 424 lL~~ 427 (443)
T PF04053_consen 424 LLIE 427 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 262
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.86 E-value=39 Score=36.27 Aligned_cols=167 Identities=13% Similarity=0.092 Sum_probs=96.2
Q ss_pred hhcCCHHHHHHHHHhcCCCCh---H---HHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCH--HHHHHHHHHHHhcC-
Q 038364 749 SKSGNLKSAREVFRKSANKTL---A---SWNCMIMGFAIYGNGKEAILLFHELLE-TGFQPDA--ITFTALLAACKNSG- 818 (1076)
Q Consensus 749 ~k~G~~~~A~~vf~~m~~~d~---~---s~n~li~~~~~~g~~~~Al~l~~~M~~-~g~~Pd~--~t~~~ll~a~~~~g- 818 (1076)
.+.|++++|.+.|+.+...-+ . +--.++-++-+.++.++|+..+++... .+-.||. +.|...++-+....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 456888888888888775322 1 223455677778888888888888765 2333443 23433333222111
Q ss_pred ---CH---HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCchH
Q 038364 819 ---LV---EEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIW--GALLGSCRIHGHLEY 890 (1076)
Q Consensus 819 ---~~---~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~--~~Ll~a~~~~g~~e~ 890 (1076)
+. .+|..-|+....++ |+.. -..+|..-+.... |.... .++..-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 11 22333333333332 2211 1111111111110 11111 123455788999999
Q ss_pred HHHHHHHHhcCCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 891 AEIASRRLFKLEPCNS---ANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~---~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
|..-++.+++--|+.+ +.+..|.++|.+.|..++|.+..+-+..
T Consensus 186 A~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 186 AINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999998766544 4577889999999999999998877743
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.54 E-value=72 Score=38.25 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=122.6
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSANKT---LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
+...|..-++.-.+.|+.+.+.-.|++...+- ..-|--.+.-....|+.+-|-.++....+--++-...+ .|+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i--~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII--HLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH--HHHHH
Confidence 45677778888888999999999998876542 23454444444444888888777766665433222222 22222
Q ss_pred --HHhcCCHHHHHHHHHHhhhcCCCCCCc-ccHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----H
Q 038364 814 --CKNSGLVEEGWKYFDSMSTDYNIIPTI-EHYSCMVDLLGKAGYLDEAW---DFIRTM-PFKPDATIWGALLG-----S 881 (1076)
Q Consensus 814 --~~~~g~~~eA~~~~~~m~~~~g~~p~~-~~y~~li~~l~r~G~l~eA~---~l~~~m-~~~pd~~~~~~Ll~-----a 881 (1076)
+-..|+.+.|..+++.+.+++ |+. +.-.--+.+..|.|..+.+. +++... +.+-+..+...+.- -
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 667889999999999998864 653 34445567788999999988 555544 22223223322221 2
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
+...++.+.|..++.++.+..|++...|..++++....+-
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 4567899999999999999999999899999998877663
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.43 E-value=86 Score=39.05 Aligned_cols=202 Identities=9% Similarity=0.004 Sum_probs=116.6
Q ss_pred HHhCCChHHHHHHHHhcC-CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038364 441 YSRNNKLELATRVFDSMK-DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTL 519 (1076)
Q Consensus 441 y~k~g~~~~A~~lf~~m~-~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l 519 (1076)
+.+.|+.++|..-+-+-. .-+. ..+|.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHH
Confidence 345577777766554322 1111 23456666666677777788888888887 777778899999999999988877
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCH-
Q 038364 520 LRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNI- 598 (1076)
Q Consensus 520 ~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~- 598 (1076)
.+.-. .|.. .+-+-..+..|.+.+-+++|.-+-....+ +..+... .+-..+++++|.+.+..++-+..
T Consensus 454 I~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~l 522 (933)
T KOG2114|consen 454 ISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISELL 522 (933)
T ss_pred HhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHHH
Confidence 76654 3321 22356677777777777777655433222 2333333 34567889999999999985322
Q ss_pred ---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhh-----hhhhcCChhHHHHHHHHhHh
Q 038364 599 ---VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVS-----GYSIWGQSKEALVIIHHMKN 661 (1076)
Q Consensus 599 ---~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~-----~y~k~g~~~~A~~lf~~m~~ 661 (1076)
..|...+ -...+++-..++-+.....-+++..++-..+. .+.-.+++..-...++.|.+
T Consensus 523 ~~l~kyGk~L----l~h~P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 523 RTLNKYGKIL----LEHDPEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred HHHHHHHHHH----HhhChHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 2222211 12345555555555544432333322221111 12223455555555554544
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.90 E-value=2.1 Score=43.52 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=70.7
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 848 DLLGKAGYLDEAWDFIRTM-PFKP------DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m-~~~p------d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
+-+.+.|++++|..-|... ..-| ..+.|..-..+..+.+..+.|+....+++++.|.+..+..-.+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4566788888888777664 2222 23344555566778899999999999999999998888888899999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 038364 921 RWEDVERLRHSMDEVG 936 (1076)
Q Consensus 921 ~~~eA~~~~~~m~~~g 936 (1076)
++++|++-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999997755
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=86.27 E-value=11 Score=36.80 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=12.8
Q ss_pred chHHHHHHHHHhcCCCCC
Q 038364 888 LEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l~P~~ 905 (1076)
...|...|++++..-|++
T Consensus 115 ~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 556777777777777765
No 267
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=13 Score=40.60 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCC---ChHHHHHHHHHHHhCCCCCChhhHHH
Q 038364 429 SNLSVCNCLISMYSRNNKLELATRVFDSMK---DHNLSSWNSMISSYTGLG---YVDVAWSLFNKMNSSRIQPDIITWNC 502 (1076)
Q Consensus 429 ~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g---~~~~A~~lf~~M~~~g~~pd~~ty~~ 502 (1076)
.|..-|-.|-..|.+.|+.+.|...|.+.. .+|...+..+-.++.... .-.++.++|+++...... |+.+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 355566677777777777777777776542 344555544444443322 345677888888776655 6677777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHH
Q 038364 503 LLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQ 540 (1076)
Q Consensus 503 Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~ 540 (1076)
|...+...|++.+|...|+.|.+.. |.......++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 7777888888888888888887765 55555555544
No 268
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.05 E-value=0.14 Score=50.24 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=81.0
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHH
Q 038364 538 VLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNA 617 (1076)
Q Consensus 538 ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A 617 (1076)
++..+.+.+.......+++.+.+.+...+..+.+.|+..|++.+..+...+.++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555666666777777777766667788899999999999888888888874333 3345667777778888888
Q ss_pred HHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCC
Q 038364 618 KKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNEN 683 (1076)
Q Consensus 618 ~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~ 683 (1076)
.-++.++.... ..+..+.+.++++.|.+.+.+. ++...|..+++.+...+.
T Consensus 90 ~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 87777654221 1112233445555555444333 356677777776665544
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.92 E-value=54 Score=35.21 Aligned_cols=56 Identities=27% Similarity=0.278 Sum_probs=37.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H---HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDA-I---TFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~---t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
+..-|.+.|.+..|..-+++|++. -|+. . .+-.+..+|-+.|..++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 346677888888888888888875 3332 2 344556677778888877776655543
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.88 E-value=38 Score=38.42 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC----CchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 870 PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC----NSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~----~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
....+|..+...++++|+++.|..++.++...++. .+.....-+.++...|+-++|.+.++...+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34558999999999999999999999999886522 45677788999999999999999988886633
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=85.81 E-value=34 Score=40.93 Aligned_cols=156 Identities=17% Similarity=0.097 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcC-CCCCh-----hhHHHHHHHHhc----CCCchhHHHHHHHHHHcCCCCChhhH
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQED-IKPNS-----TTMSSLLQTCGG----LGLLQNGKEIHCLCLKNGFIKDAYVA 741 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~g-i~pd~-----~t~~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~~~ 741 (1076)
..++....=.|+-+.+++++.+..+.+ +.-.. .+|..++..+.. ..+.+.+.+++..+.+. -|+...+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 344555555666666666666554321 11111 123333332222 33455666666666653 2443333
Q ss_pred -HHHHHHHhhcCCHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 742 -TGLIDMYSKSGNLKSAREVFRKSANK-------TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 742 -~~Li~~y~k~G~~~~A~~vf~~m~~~-------d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
-.-..++...|++++|.+.|++.... ....+--+.-.+....++++|.+.|.++.+.. .....+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 23445666677777777777754421 11122233444566667777777777776632 2223333333333
Q ss_pred -HHhcCCH-------HHHHHHHHHh
Q 038364 814 -CKNSGLV-------EEGWKYFDSM 830 (1076)
Q Consensus 814 -~~~~g~~-------~eA~~~~~~m 830 (1076)
+...|+. ++|.++|.+.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHH
Confidence 2334544 5555555444
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.51 E-value=44 Score=36.59 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=101.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC
Q 038364 776 IMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G 854 (1076)
.......|+..+|..+|+..... .|+. ..-..+..++...|++++|..++..+..+. -.........-+..+.++.
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHh
Confidence 34566788888888888888873 3333 345566777888999999999988775431 0111111234466777777
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcC--CCCCchhHHHHHHHHHHcCChH-HHHHHHH
Q 038364 855 YLDEAWDFIRTMPFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKL--EPCNSANYNLMMNLLAMSNRWE-DVERLRH 930 (1076)
Q Consensus 855 ~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l--~P~~~~~y~~L~~~y~~~G~~~-eA~~~~~ 930 (1076)
...+...+..+.--.| |...-..|...+...|+.+.|...+-.++.. .-++...-..|..++...|.-+ .+.+.|+
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6666666666664455 5556666777788889998888777666654 3445677778888887777543 4455555
Q ss_pred HH
Q 038364 931 SM 932 (1076)
Q Consensus 931 ~m 932 (1076)
+|
T Consensus 298 kL 299 (304)
T COG3118 298 KL 299 (304)
T ss_pred HH
Confidence 55
No 273
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.11 E-value=6.6 Score=43.05 Aligned_cols=159 Identities=13% Similarity=0.006 Sum_probs=109.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHH----HHHHHhcCCH
Q 038364 781 IYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCM----VDLLGKAGYL 856 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~l----i~~l~r~G~l 856 (1076)
-.|+..+|-..++++++. .+.|-..+.-.=.+|...|+.+.-+..++++.. ...|+...|.-+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 368888888888888874 566777788778889999999888888888764 346666555433 3345588899
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC----CchhHHHHHHHHHHcCChHHHHHHHH
Q 038364 857 DEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC----NSANYNLMMNLLAMSNRWEDVERLRH 930 (1076)
Q Consensus 857 ~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~----~~~~y~~L~~~y~~~G~~~eA~~~~~ 930 (1076)
++|++.-++. .+. -|...-.++.......|+.++|.+..++--..=.+ -...|...+-.|...+.++.|+++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888876 333 35555566667777888888888776554221111 12346666667777788889999888
Q ss_pred HHHhCCCccCcc
Q 038364 931 SMDEVGVKSVLV 942 (1076)
Q Consensus 931 ~m~~~g~~~~~~ 942 (1076)
.=.-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 755444555544
No 274
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.98 E-value=18 Score=39.80 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=114.4
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHH--HHHhcCCHHH
Q 038364 750 KSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITF--TALLA--ACKNSGLVEE 822 (1076)
Q Consensus 750 k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~--~~ll~--a~~~~g~~~e 822 (1076)
-.|+..+|...++++.+ .|..+|+---.+|.-.|+.+.-...+++.... ..||...| ..=+- ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45777788777887764 58889999999999999999999999988764 35555333 22222 3567899999
Q ss_pred HHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHHcCCchHHHHH
Q 038364 823 GWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP-------DATIWGALLGSCRIHGHLEYAEIA 894 (1076)
Q Consensus 823 A~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~~~p-------d~~~~~~Ll~a~~~~g~~e~A~~~ 894 (1076)
|.+.-++..+ +.|. ...-.+....+.-.|+..|+.++..+-...- ...-|...+ .+...+.++.|+++
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHH
Confidence 9998776643 3332 3344467778888999999999998864211 111222222 12334789999999
Q ss_pred HHHHh--cCCCCCchh---HHHHHHHHHHcCChHHHHHHHHHH
Q 038364 895 SRRLF--KLEPCNSAN---YNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 895 ~~~l~--~l~P~~~~~---y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
|++-+ +++.+|..+ |.-+-.+..+...|.+-.++-+.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 97643 455666533 333344445555555555444433
No 275
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.90 E-value=8.9 Score=41.32 Aligned_cols=62 Identities=18% Similarity=0.091 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTM----PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m----~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
-.|...+...|++++|...|..+ |-.|- +...--|.......|+.++|...++++.+--|+.
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 34444444444444444444333 11111 1233333444445555555555555555555554
No 276
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.68 E-value=33 Score=35.65 Aligned_cols=179 Identities=17% Similarity=0.126 Sum_probs=97.0
Q ss_pred HhhcCCHHHHHHHHHhcC--CCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 038364 748 YSKSGNLKSAREVFRKSA--NKT-LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEG 823 (1076)
Q Consensus 748 y~k~G~~~~A~~vf~~m~--~~d-~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA 823 (1076)
|-..|-++-|+--|.+.. .|+ +..+|-+.--+...|+++.|.+.|+...+ +.|.- .++..---++--.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 444555666665555433 233 35677777777788888888888888777 44433 2222212234456777777
Q ss_pred HHHHHHhhhcCCCCCCcccHHHH-HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC
Q 038364 824 WKYFDSMSTDYNIIPTIEHYSCM-VDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLE 902 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~~y~~l-i~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~ 902 (1076)
.+-|...-.. .|+.. |.++ +-+-.+.-+..+|..-+.+--...|..-|+..+-.+.- |+.. -+.+++++.+-.
T Consensus 153 q~d~~~fYQ~---D~~DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a 226 (297)
T COG4785 153 QDDLLAFYQD---DPNDP-FRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA 226 (297)
T ss_pred HHHHHHHHhc---CCCCh-HHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc
Confidence 7655544332 23211 2221 11122334455555433322123455566665544322 1111 112233333222
Q ss_pred CCC-------chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 903 PCN-------SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 903 P~~-------~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.++ .++|.-|+..|-..|..++|..+++....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 222 47899999999999999999999998743
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=83.07 E-value=63 Score=36.64 Aligned_cols=148 Identities=11% Similarity=-0.042 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--ccc
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQP---DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT--IEH 842 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~P---d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~--~~~ 842 (1076)
...+|..++..+.++|+++.|...+.++...+..+ +......-....-..|+-++|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34567777888888888888888877777643211 1122222233345667777777777666552 11111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 843 YSCMVDLLGKAGYLDEAWDF-IRTMPFKPDATIWGALLGSCRIH------GHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l-~~~m~~~pd~~~~~~Ll~a~~~~------g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000011222222333333 788889999999999999887777777776
Q ss_pred HHH
Q 038364 916 LAM 918 (1076)
Q Consensus 916 y~~ 918 (1076)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 643
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.76 E-value=0.13 Score=50.51 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=78.1
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCG 714 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~ 714 (1076)
....+|+.+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.
T Consensus 9 ~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~ 81 (143)
T PF00637_consen 9 EISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCE 81 (143)
T ss_dssp CSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHH
Confidence 345678888888999999999999987665667888999999999998888888887722 1233345666666
Q ss_pred cCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC-----------CCChHHHHHHHHHHHHcC
Q 038364 715 GLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA-----------NKTLASWNCMIMGFAIYG 783 (1076)
Q Consensus 715 ~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----------~~d~~s~n~li~~~~~~g 783 (1076)
+.+.++.+.. .|.+.|++++|.++...+. ..+...|..++..+..++
T Consensus 82 ~~~l~~~a~~----------------------Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 82 KHGLYEEAVY----------------------LYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSK 139 (143)
T ss_dssp TTTSHHHHHH----------------------HHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTST
T ss_pred hcchHHHHHH----------------------HHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 6655554444 4455555555554322111 134567777777766554
Q ss_pred C
Q 038364 784 N 784 (1076)
Q Consensus 784 ~ 784 (1076)
.
T Consensus 140 ~ 140 (143)
T PF00637_consen 140 P 140 (143)
T ss_dssp C
T ss_pred c
Confidence 3
No 279
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.61 E-value=20 Score=43.34 Aligned_cols=204 Identities=16% Similarity=0.181 Sum_probs=112.6
Q ss_pred HHHHHhHhcCCCCch---HHHHHHHHHHhcCCChhHHHHHHHHHhhcCC------CCC-hhhHHHHHHHHhcCCCchhHH
Q 038364 654 VIIHHMKNSGIYPNV---VTWTSLISGSLQNENYRESLKFFIQMQQEDI------KPN-STTMSSLLQTCGGLGLLQNGK 723 (1076)
Q Consensus 654 ~lf~~m~~~gi~pd~---~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi------~pd-~~t~~~lL~a~~~~g~~~~a~ 723 (1076)
.++++|..+--.|++ .+-..|+-.|....+++...++.+.+..-.- .++ .+.|.-.|+-=.+-|+-++|.
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 344555543223333 2233344445555566666666666653210 011 122333333334556777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 038364 724 EIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD 803 (1076)
Q Consensus 724 ~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd 803 (1076)
.+.--+++..-. ..-+|||-||++- +.|- +-+.|...+..+.|+++|++.-+ +.|.
T Consensus 264 ~~~l~lve~eg~-------vapDm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~ 319 (1226)
T KOG4279|consen 264 NTVLPLVEKEGP-------VAPDMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPL 319 (1226)
T ss_pred HHHHHHHHhcCC-------CCCceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCch
Confidence 665555543111 1124677788643 3321 12345556667789999999887 7887
Q ss_pred HHH---HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038364 804 AIT---FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLG 880 (1076)
Q Consensus 804 ~~t---~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~ 880 (1076)
..+ +..||.+-.+ .++...++ +.+ | -.|-.+++|.|.++.-.++++-. ..+.
T Consensus 320 ~~sGIN~atLL~aaG~--~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV~----------~y~~ 374 (1226)
T KOG4279|consen 320 EYSGINLATLLRAAGE--HFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDVA----------TYFE 374 (1226)
T ss_pred hhccccHHHHHHHhhh--hccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhHH----------Hhhh
Confidence 753 4444443221 12222221 111 1 13456789999999888877542 3455
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+-.-.+|+.+|..+++.++++.|...
T Consensus 375 asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhccCCcee
Confidence 66667899999999999999998653
No 280
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=82.57 E-value=2.9 Score=39.46 Aligned_cols=56 Identities=18% Similarity=0.056 Sum_probs=51.3
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
-+....|+.+.|++.|.+.+.+-|+++++|+..+..|.-+|+.++|.+-+++..+.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34677899999999999999999999999999999999999999999999887653
No 281
>PRK09687 putative lyase; Provisional
Probab=82.44 E-value=85 Score=34.70 Aligned_cols=139 Identities=8% Similarity=-0.024 Sum_probs=77.2
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 564 DYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKG-LFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 564 ~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g-~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
.++..+-...+.++.+.++.+....+..-+..+|...-...+.++.+.+ ...++...+..+.. .+|...-...+.+
T Consensus 139 D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 139 DKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 3455666667777777776544444444555555555555555555543 23456666655553 3455556666777
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCG 714 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~ 714 (1076)
+.+.|+. .|...+-...+.+ + ..-..+.++...|.. +|+..+.++.+. .||..+-...+.+|.
T Consensus 216 Lg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 216 LALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7777764 4444444444321 2 233556666776664 567777666642 345555555555543
No 282
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.07 E-value=39 Score=32.39 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=25.8
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 038364 467 SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLG 527 (1076)
Q Consensus 467 ~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~g 527 (1076)
.-++.+.+.|+-+.-.++.+++.. +-++++...-.+..+|.+.|+..++-+++++..+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334445555555555555555443 222344444444455555555555555555554444
No 283
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.00 E-value=90 Score=38.76 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=14.7
Q ss_pred HhcCCChhHHHHHHHHHhhcCCCC
Q 038364 678 SLQNENYRESLKFFIQMQQEDIKP 701 (1076)
Q Consensus 678 ~~~~g~~~eAl~l~~~m~~~gi~p 701 (1076)
+..+|++++|++.++++ ++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHcCCHHHHHHHHHhC---CCCC
Confidence 56789999999988888 4666
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=81.66 E-value=2.1 Score=30.84 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999853
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.65 E-value=1.6 Score=30.62 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
+|..+...+...|++++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666677777778888888888888777774
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=81.56 E-value=22 Score=39.65 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=8.4
Q ss_pred HHHHHHHHHcCCCCchhHH
Q 038364 552 RESHGYILRNGLDYDLYVG 570 (1076)
Q Consensus 552 ~~i~~~~~~~g~~~d~~v~ 570 (1076)
..+++.+.+.|+..+..++
T Consensus 82 ~~~y~~L~~~gFk~~~y~~ 100 (297)
T PF13170_consen 82 LDIYEKLKEAGFKRSEYLY 100 (297)
T ss_pred HHHHHHHHHhccCccChHH
Confidence 3444444444444444333
No 287
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=79.43 E-value=30 Score=38.55 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cC----CcHHHHHHHHHHHHhC
Q 038364 378 ENAIKLFREMQFSSAKAISRTIVKMLQACAK--VG----AFHEGKQIHGYVLKSA 426 (1076)
Q Consensus 378 ~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~i~~~~~~~g 426 (1076)
++.+++++.|.+.|++-+.+++.+.+-.... .. ....++.+|..|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 3455677778888888777777664433322 11 2334555666665554
No 288
>PRK15331 chaperone protein SicA; Provisional
Probab=79.22 E-value=16 Score=36.57 Aligned_cols=82 Identities=9% Similarity=-0.086 Sum_probs=38.1
Q ss_pred hCCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 038364 443 RNNKLELATRVFDSMKD---HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTL 519 (1076)
Q Consensus 443 k~g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l 519 (1076)
..|++++|..+|.-+.- -|..-|..|-..+-..+.+++|+.+|...-..+.. |...+--...++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHHH
Confidence 34555555555554421 23333444444555555555555555544333322 333333444444444444444444
Q ss_pred HHHHHh
Q 038364 520 LRGMQS 525 (1076)
Q Consensus 520 ~~~m~~ 525 (1076)
|....+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 444433
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.07 E-value=8.6 Score=38.18 Aligned_cols=55 Identities=22% Similarity=0.152 Sum_probs=44.9
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
-..+++.+.++.++..+.-+.|+.++.-..-+.++...|+|.||.++++.+.+.+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3456788888888888888888888888888888888888888888888886655
No 290
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.89 E-value=5.6 Score=30.00 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHH
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWN 501 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~ 501 (1076)
.|..+-..|.+.|++++|.++|++..+..+. |...|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~ 39 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWR 39 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHH
Confidence 3455556666666666666666666655443 343333
No 291
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.30 E-value=3.9 Score=44.77 Aligned_cols=113 Identities=13% Similarity=0.021 Sum_probs=80.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCC
Q 038364 811 LAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTMP-FK-PDATIWGALLGSCRIHGH 887 (1076)
Q Consensus 811 l~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~-pd~~~~~~Ll~a~~~~g~ 887 (1076)
-+-|.+.|.++||+..|..-. .+.| ++..|..-..+|.+..++..|+.=..... +. .-.-.|.--..|-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 445888999999999987765 4556 78888888889999999998876555432 10 111234444455556789
Q ss_pred chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 038364 888 LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRH 930 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~ 930 (1076)
.++|.+-++.+++++|++ .-|-..|++.....|+.-+.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN----IELKKSLARINSLRERKIATK 219 (536)
T ss_pred HHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhhhHHhh
Confidence 999999999999999986 345566666666666654443
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=77.10 E-value=2.6 Score=30.29 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.13 E-value=11 Score=36.88 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=46.0
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.+++.+.++.+++.+.-+.|+.++.-..-+.++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37888888888888888899998888888999999999999999999887665
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.98 E-value=61 Score=32.29 Aligned_cols=88 Identities=16% Similarity=0.050 Sum_probs=52.0
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCchHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTI-EHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~-~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~~~~~~Ll~a~~~~g~~e~A 891 (1076)
-...++.+++..+++.+. -+.|.. ++-..-+..+.+.|++++|..+++++. -.|....-.+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345667777777777764 345552 233334455677788888888888773 234444455666666655444444
Q ss_pred HHHHHHHhcCCCC
Q 038364 892 EIASRRLFKLEPC 904 (1076)
Q Consensus 892 ~~~~~~l~~l~P~ 904 (1076)
...++++++..++
T Consensus 97 r~~A~evle~~~d 109 (160)
T PF09613_consen 97 RRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHhcCCC
Confidence 4555666666553
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.89 E-value=26 Score=35.08 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=70.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcc-cHHHH--HHHHHhcC
Q 038364 779 FAIYGNGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIE-HYSCM--VDLLGKAG 854 (1076)
Q Consensus 779 ~~~~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~-~y~~l--i~~l~r~G 854 (1076)
+++.+..++|+.-|.++.+.|..--.+. ..-........|+..+|...|+++-.+ .-.|.+. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 3556666777777777776654433321 111222356677777777777777654 2222221 11111 23456778
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038364 855 YLDEAWDFIRTMPFKPD---ATIWGALLGSCRIHGHLEYAEIASRRLFK 900 (1076)
Q Consensus 855 ~l~eA~~l~~~m~~~pd---~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~ 900 (1076)
.+++...-.+.+..+.+ ...-.+|.-+-.+.|++..|...|+++.+
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88887777776632222 23445566667788888888888888776
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.13 E-value=33 Score=40.78 Aligned_cols=148 Identities=18% Similarity=0.091 Sum_probs=98.5
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 038364 751 SGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDS 829 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~ 829 (1076)
.|+++.|..++..+++ ..-+.++.-+-+.|..++|+++ .||.. -|.. ..+.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHHh
Confidence 3566666665555542 2334455666667777776653 34432 2322 2467899999887655
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhH
Q 038364 830 MSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANY 909 (1076)
Q Consensus 830 m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y 909 (1076)
.. +..-|..|.++...+|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+.....+-...
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~----- 724 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN----- 724 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhccc-----
Confidence 42 35679999999999999999999998753 3677888888888877666666555544333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 038364 910 NLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 910 ~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+.--..|...|+.++..+++.+-
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHhc
Confidence 33445677789999988887654
No 297
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=74.92 E-value=1.7e+02 Score=33.89 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=41.0
Q ss_pred hhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcC
Q 038364 637 NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQED 698 (1076)
Q Consensus 637 ~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~g 698 (1076)
..|+.-|.-.|++.+|.+..+++.-- .-...+.+.+++.+.-+.|+-...+.++++.-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34667777788888888887776310 11245667778888888777777777777765544
No 298
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.87 E-value=1.8e+02 Score=34.27 Aligned_cols=238 Identities=16% Similarity=0.194 Sum_probs=132.2
Q ss_pred HHHHHHHhHhcCCCCchHHHHHHHHHHhcCC------ChhHHHHHHHHHhhc-CCCCCh-hhHHHHHHHHhcCCCchhHH
Q 038364 652 ALVIIHHMKNSGIYPNVVTWTSLISGSLQNE------NYRESLKFFIQMQQE-DIKPNS-TTMSSLLQTCGGLGLLQNGK 723 (1076)
Q Consensus 652 A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g------~~~eAl~l~~~m~~~-gi~pd~-~t~~~lL~a~~~~g~~~~a~ 723 (1076)
...+|++..+. .|+...|++.|..|...- ....-+.+++..... +..++. .-|..+.-..... ..+.
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~---~~~r 375 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTL---NEAR 375 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhcc---chHh
Confidence 34666666542 456777888887765432 344455555554432 333432 3344444333332 2344
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHh--------cCCCChHHHHHHHHHHHHcCC-HHH-HHHHHH
Q 038364 724 EIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRK--------SANKTLASWNCMIMGFAIYGN-GKE-AILLFH 793 (1076)
Q Consensus 724 ~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~--------m~~~d~~s~n~li~~~~~~g~-~~~-Al~l~~ 793 (1076)
.....+...++..+...|..-+........ ++.-+|.. +...-..+|++-. .|+ ..+ .+.++-
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 444444434455566665544444432211 33333333 2223445666555 122 111 222222
Q ss_pred HHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHH---HHhcCCHHHHHHHHHhC--C
Q 038364 794 ELLETGFQPDAITFT-ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDL---LGKAGYLDEAWDFIRTM--P 867 (1076)
Q Consensus 794 ~M~~~g~~Pd~~t~~-~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~---l~r~G~l~eA~~l~~~m--~ 867 (1076)
.....-..|+..|+. .++.-+-..|-+.+|+..+..+... -.|+...|..||.. ...+| +.-+.++++.| .
T Consensus 449 ~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~ 525 (568)
T KOG2396|consen 449 SALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE 525 (568)
T ss_pred HHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH
Confidence 222233567777653 4566677788889999999888653 33456677777754 23344 77778888887 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc-CCCC
Q 038364 868 FKPDATIWGALLGSCRIHGHLEYAEIASRRLFK-LEPC 904 (1076)
Q Consensus 868 ~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~-l~P~ 904 (1076)
+-.|+..|...+.--..+|..+.+-.++.++++ ++|.
T Consensus 526 fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 526 FGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred hCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 447888898888888888888888777777664 4454
No 299
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=74.79 E-value=18 Score=39.59 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHh-----CCCCCChhhHH
Q 038364 431 LSVCNCLISMYSRNNKLELATRVFDSMKDH---NLSSWNSMISSYTGLGYVDVAWSLFNKMNS-----SRIQPDIITWN 501 (1076)
Q Consensus 431 ~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~-----~g~~pd~~ty~ 501 (1076)
..++..++..+..+|+.+.+...+++.... |...|..+|.+|.++|+...|++.|+++.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345677777777777777777777766433 445777777777777777777777777644 35554444433
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.26 E-value=83 Score=32.39 Aligned_cols=111 Identities=12% Similarity=0.076 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH-----HHHHHHhcCCHHHH
Q 038364 787 EAILLFHELLETGFQPDAITFTA--LLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC-----MVDLLGKAGYLDEA 859 (1076)
Q Consensus 787 ~Al~l~~~M~~~g~~Pd~~t~~~--ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~-----li~~l~r~G~l~eA 859 (1076)
+.....+++....-+-...++.+ +..++...+++++|...++..... |.-+.+.. |.......|..|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44455555554321222222222 233477788888888887765432 33333433 44567788999999
Q ss_pred HHHHHhCCCCCCHHHHHH-----HHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 860 WDFIRTMPFKPDATIWGA-----LLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 860 ~~l~~~m~~~pd~~~~~~-----Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+..++...- ..|.+ -.+++...|+-++|+..|++.++.++++
T Consensus 146 L~~L~t~~~----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIKE----ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhcccc----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 998887532 22333 2366788899999999999988877543
No 301
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.58 E-value=2.4e+02 Score=35.06 Aligned_cols=58 Identities=16% Similarity=0.108 Sum_probs=34.8
Q ss_pred HHHHHHHhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCCC-------hHHHHHHHHHHHhCCC
Q 038364 436 CLISMYSRNNKLELATRVFDSMK---DHNLSSWNSMISSYTGLGY-------VDVAWSLFNKMNSSRI 493 (1076)
Q Consensus 436 ~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g~-------~~~A~~lf~~M~~~g~ 493 (1076)
++|--+.|||++++|.++..+.. .+....+-..+..|+.+.+ -+....-|++......
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 46667789999999999984332 2334466677777776532 2345555666655443
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=73.57 E-value=1.5e+02 Score=32.67 Aligned_cols=62 Identities=10% Similarity=-0.039 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCChH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 038364 464 SWNSMISSYTGLGYVD---VAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSL 526 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~---~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~ 526 (1076)
+...++.+|...+..+ +|.++++.+...... ....+-.-+..+.+.++.+++.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666655433 455555555444322 2344444455555567777777777777665
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.22 E-value=1.2e+02 Score=35.69 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=50.5
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHH
Q 038364 461 NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQ 540 (1076)
Q Consensus 461 d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~ 540 (1076)
|-...-++|..+.++-...-...+-.+|.+-|- +...|-.++..|..+ ..++-..+++++.+.. -|.+.+...+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 334455666667666666666677777766542 455666666666666 4555566666655544 23333333333
Q ss_pred HHHhcCchHHHHHHHHHHH
Q 038364 541 AVTELRLLKYGRESHGYIL 559 (1076)
Q Consensus 541 a~~~~g~~~~a~~i~~~~~ 559 (1076)
-....++.+.+...|..++
T Consensus 140 ~~yEkik~sk~a~~f~Ka~ 158 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHhchhhHHHHHHHHH
Confidence 3333344444444444333
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=73.15 E-value=32 Score=35.16 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=57.5
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhcCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHH
Q 038364 739 YVATGLIDMYSKSGNLKSAREVFRKSANKTL------ASWNCMIMGFAIYGNGKEAILLFHELLE---TGFQPDAITFTA 809 (1076)
Q Consensus 739 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~------~s~n~li~~~~~~g~~~~Al~l~~~M~~---~g~~Pd~~t~~~ 809 (1076)
..+..+.+.|.+.|++++|.+.|.++.+... ..+-.+|......+++..+.....+... .|-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3456788888888888888888888776432 3455677777778888877777666553 222222222222
Q ss_pred HHHH--HHhcCCHHHHHHHHHHhh
Q 038364 810 LLAA--CKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 810 ll~a--~~~~g~~~eA~~~~~~m~ 831 (1076)
+..+ +...+++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2222 344566666666665543
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.49 E-value=1.1e+02 Score=32.54 Aligned_cols=18 Identities=17% Similarity=0.529 Sum_probs=11.4
Q ss_pred HHhhcCCHHHHHHHHHhc
Q 038364 747 MYSKSGNLKSAREVFRKS 764 (1076)
Q Consensus 747 ~y~k~G~~~~A~~vf~~m 764 (1076)
.++-.+++++|.++|.+.
T Consensus 23 lfgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERA 40 (288)
T ss_pred ccCCCcchHHHHHHHHHH
Confidence 344555777777777654
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.93 E-value=17 Score=40.01 Aligned_cols=79 Identities=10% Similarity=-0.021 Sum_probs=56.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC
Q 038364 776 IMGFAIYGNGKEAILLFHELLETGFQP-DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G 854 (1076)
.+-|.++|++++|+..|.+-.. +.| |.+++..-..||.+...+..|..-...... .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 4679999999999999998876 678 889998888899998888777665544432 1124566777665
Q ss_pred CHHHHHHHHHh
Q 038364 855 YLDEAWDFIRT 865 (1076)
Q Consensus 855 ~l~eA~~l~~~ 865 (1076)
.-.+++..+.+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 44444444433
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.49 E-value=27 Score=38.25 Aligned_cols=96 Identities=17% Similarity=0.274 Sum_probs=70.8
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 038364 733 GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-K--------TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD 803 (1076)
Q Consensus 733 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-~--------d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd 803 (1076)
|......+...+++.-....+++++...+-+... + ...+|-.++.. =++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccc
Confidence 4444455556677777777888888887766553 2 22344444333 367799999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 804 AITFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 804 ~~t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
..|++.++..+.+.+++.+|.++...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999888776654
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.17 E-value=7.8 Score=30.81 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 877 ALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 877 ~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+.-|+.+.|+++.|.+..+.+++++|+|.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 355678899999999999999999999984
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=70.67 E-value=8.8 Score=26.77 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD 803 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd 803 (1076)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3567777777788888888888877776 4554
No 310
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=70.46 E-value=29 Score=38.77 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=53.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHH-----
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHELLE----TGFQPDAI----- 805 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~----~g~~Pd~~----- 805 (1076)
+..++.-.+.++.+.+-|+...+ .| ...+-.|.+.|.+..++++|+-...+..+ .+++--..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444444555555555543221 11 12455555566666666665544443332 11111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhc---CCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHh
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTD---YNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRT 865 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~---~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~ 865 (1076)
....+.-++...|.+-.|.+.-++..+- +|-.|. .....++.|.|-..|+.|.|+.-+++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1112223344555555555444443221 122221 22334566666666666666555544
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=70.26 E-value=54 Score=33.47 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcc------
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI--TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIE------ 841 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~------ 841 (1076)
..|..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+..+..+...-..-..|.+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 367788899999999999999999999977777764 467788888889999998888877754311111111
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTMP 867 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m~ 867 (1076)
.|..+ .+...|++.+|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 22222 2235678888888777663
No 312
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.59 E-value=1.3e+02 Score=30.38 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=82.1
Q ss_pred HhhcCCHHHHHHHHHhcCCCChHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH--HHhcCC
Q 038364 748 YSKSGNLKSAREVFRKSANKTLASWNCM-----IMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTALLAA--CKNSGL 819 (1076)
Q Consensus 748 y~k~G~~~~A~~vf~~m~~~d~~s~n~l-----i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a--~~~~g~ 819 (1076)
+++.++.++|..-|..+.+.+--+|-.| .....+.|+...|+..|++.-...-.|... -..-|-.+ +...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 5678899999999999887766555443 456778899999999999988765556554 22223333 567888
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 820 VEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
+++...-.+-+..+ +-.-....--.|.-+-.++|++.+|.++|..+
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 88887766666433 22222223345666677999999999999886
No 313
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.43 E-value=30 Score=37.91 Aligned_cols=94 Identities=12% Similarity=0.178 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHhcCC-C--------ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhH
Q 038364 430 NLSVCNCLISMYSRNNKLELATRVFDSMKD-H--------NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITW 500 (1076)
Q Consensus 430 d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~-~--------d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty 500 (1076)
...+-..++..-....+++++...+-+... + ..++|--++. .-++++++.++..=.+-|+-||..+.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhH
Confidence 333444555555555667777766655532 1 2233333322 23567888888888888888888888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcC
Q 038364 501 NCLLSGHFTHGSYQNVLTLLRGMQSLG 527 (1076)
Q Consensus 501 ~~Li~~~~~~g~~~~Al~l~~~m~~~g 527 (1076)
+.+|+.+.+.+++.+|.++...|....
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888877776543
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.87 E-value=31 Score=41.00 Aligned_cols=148 Identities=16% Similarity=0.121 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHh
Q 038364 580 NDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHM 659 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m 659 (1076)
.|+++.|..++..+++ ..-+.++..+-+.|..++|+++- +|..-- .....+.|+++.|.++-.+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 4666666666666553 23344555666666666666542 222211 12334668888888777665
Q ss_pred HhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChh
Q 038364 660 KNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAY 739 (1076)
Q Consensus 660 ~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~ 739 (1076)
. +..-|..|-++..+.|++..|.+.|.+..+ |.+|+-.+...|+-+....+-....+.|..
T Consensus 664 ~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~---- 724 (794)
T KOG0276|consen 664 N------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN---- 724 (794)
T ss_pred c------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc----
Confidence 3 567788888888888888888888877653 456666666677666555555555554422
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHh
Q 038364 740 VATGLIDMYSKSGNLKSAREVFRK 763 (1076)
Q Consensus 740 ~~~~Li~~y~k~G~~~~A~~vf~~ 763 (1076)
|.---.|...|+++++.+++.+
T Consensus 725 --N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 --NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --chHHHHHHHcCCHHHHHHHHHh
Confidence 2223345566666666666544
No 315
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.34 E-value=1.7e+02 Score=31.26 Aligned_cols=103 Identities=7% Similarity=-0.059 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 038364 500 WNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVK 579 (1076)
Q Consensus 500 y~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k 579 (1076)
|..-..+|....++++|-..+.+..+.. +-|..-| -... ..+++..+...+.+. .--+..++--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf-hAAK------ayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF-HAAK------AYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH-HHHH------HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 3334456666677777776666554211 0111111 1111 222222222222221 1123346677788999
Q ss_pred CCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 038364 580 NDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQM 624 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M 624 (1076)
+|..+-|-..+++.-+ ...+-++++|++++.+-
T Consensus 104 ~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqra 136 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRA 136 (308)
T ss_pred hCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHH
Confidence 9988877766665332 12334556666666554
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=68.17 E-value=18 Score=39.52 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++..+..++...|+.+.+...++++++.+|-+-..|..|...|.+.|+...|++.++.+++
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666777778888888888888888888888888888888888888888888888755
No 317
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=67.83 E-value=7 Score=25.78 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHH
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRH 930 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~ 930 (1076)
.....|+..+...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778889999999999988765
No 318
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=67.42 E-value=21 Score=36.13 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC----hHHHHHHHHHH
Q 038364 888 LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR----WEDVERLRHSM 932 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~----~~eA~~~~~~m 932 (1076)
+++|+.-+++++.++|+...++.+++++|...+. -.+|.+.+++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3566777888899999999999999999988765 23455555544
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=66.93 E-value=9.3 Score=27.86 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.++..|+..|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678889999999999999999888754
No 320
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=66.64 E-value=1.6e+02 Score=30.24 Aligned_cols=176 Identities=13% Similarity=0.095 Sum_probs=89.1
Q ss_pred cCCCCchHHHHHHHHHHhcCC----ChhHHHHHHHHHhhcCCCCChh----hHHHHHHHHhcCCCchhHHHHHHHHHHcC
Q 038364 662 SGIYPNVVTWTSLISGSLQNE----NYRESLKFFIQMQQEDIKPNST----TMSSLLQTCGGLGLLQNGKEIHCLCLKNG 733 (1076)
Q Consensus 662 ~gi~pd~~ty~~LI~~~~~~g----~~~eAl~l~~~m~~~gi~pd~~----t~~~lL~a~~~~g~~~~a~~i~~~~~~~g 733 (1076)
.|..+|..+++-++..+.+.. ..+-++++=.+.+..++.++.. ....-+.-|-..||+.+--.
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~--------- 72 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGN--------- 72 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhh---------
Confidence 366778888888887776543 3344444444444444554433 12222233444444332222
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHH--------HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 038364 734 FIKDAYVATGLIDMYSKSGNLKSAREV--------FRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI 805 (1076)
Q Consensus 734 ~~~d~~~~~~Li~~y~k~G~~~~A~~v--------f~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~ 805 (1076)
..++...-|.+.++-.++ .++-+++-.+.|-....+-++..+.+++-+.|- ..
T Consensus 73 ---------ly~nv~~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GR 133 (233)
T PF14669_consen 73 ---------LYINVKMGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GR 133 (233)
T ss_pred ---------HHhhHHhhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hH
Confidence 222233333444433322 233333334455555555554444444322211 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC--------------CCCcccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNI--------------IPTIEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~--------------~p~~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
.=.+++-.|.+.-++.+|+++++.|.+- .+ .+.-..-|.-+..+.++|.+|-|..++++-
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el-~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHEL-QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 2235566688888899999998887542 11 222334455566677777777777777664
No 321
>PRK12798 chemotaxis protein; Reviewed
Probab=66.60 E-value=2.5e+02 Score=32.51 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=117.5
Q ss_pred cCCHHHHHHHHHhcCCC----ChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHH
Q 038364 751 SGNLKSAREVFRKSANK----TLASWNCMIMG-FAIYGNGKEAILLFHELLETGFQPDAIT----FTALLAACKNSGLVE 821 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~~----d~~s~n~li~~-~~~~g~~~~Al~l~~~M~~~g~~Pd~~t----~~~ll~a~~~~g~~~ 821 (1076)
.|+-++|.+.+..+... .+..+-+|+.+ .....+..+|+++|++..- .-|.... ..--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 69999999999888743 34566666654 4556789999999999886 5666543 333334467889999
Q ss_pred HHHHHHHHhhhcCCCCCCcccHH-HHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038364 822 EGWKYFDSMSTDYNIIPTIEHYS-CMVDLLGKAG---YLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRR 897 (1076)
Q Consensus 822 eA~~~~~~m~~~~g~~p~~~~y~-~li~~l~r~G---~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~ 897 (1076)
++..+-.....+|...|=...|. .++..+.+.+ +.+.-.+++..|.-.--..+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887777777666666544333 2333444333 3444455566664223345788888888899999999999999
Q ss_pred HhcCCCCCchhHHHHHHHHHHc-----CChHHHHHHHHHH
Q 038364 898 LFKLEPCNSANYNLMMNLLAMS-----NRWEDVERLRHSM 932 (1076)
Q Consensus 898 l~~l~P~~~~~y~~L~~~y~~~-----G~~~eA~~~~~~m 932 (1076)
+..+... ...-...+++|... ...++|.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9988633 33444555555443 3355555555444
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=65.29 E-value=10 Score=26.29 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999988653
No 323
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.47 E-value=2.2e+02 Score=30.72 Aligned_cols=233 Identities=17% Similarity=0.195 Sum_probs=126.5
Q ss_pred ChhHHHHHHHHhHhcCCCCc---hHHHHHHHHHHhcCCChhHHHHHHHHHhh---cCC--CCChhhHHHHHHHHhcCCCc
Q 038364 648 QSKEALVIIHHMKNSGIYPN---VVTWTSLISGSLQNENYRESLKFFIQMQQ---EDI--KPNSTTMSSLLQTCGGLGLL 719 (1076)
Q Consensus 648 ~~~~A~~lf~~m~~~gi~pd---~~ty~~LI~~~~~~g~~~eAl~l~~~m~~---~gi--~pd~~t~~~lL~a~~~~g~~ 719 (1076)
.+++|+.-|++..+..-+.. -...-.||..+.+.|++++.++.+.+|.. +.+ .-+..+.++++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555555544211111 12233456666667777776666666642 111 22345666777666666666
Q ss_pred hhHHHHHHHHHHc----C-CCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC------------CC---hHHHHHHHHHH
Q 038364 720 QNGKEIHCLCLKN----G-FIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN------------KT---LASWNCMIMGF 779 (1076)
Q Consensus 720 ~~a~~i~~~~~~~----g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------------~d---~~s~n~li~~~ 779 (1076)
+.-.+.++.-++. . -..--.+-+-|...|...|.+..-.++++++.. ++ ...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 6555555433221 0 001112234567777777777777777766542 11 13566667888
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHhhhcCCCC--CCcc---cHHHHHH
Q 038364 780 AIYGNGKEAILLFHELLETG-FQPDAITFTALLAACK-----NSGLVEEGWKYFDSMSTDYNII--PTIE---HYSCMVD 848 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g-~~Pd~~t~~~ll~a~~-----~~g~~~eA~~~~~~m~~~~g~~--p~~~---~y~~li~ 848 (1076)
....+-.+-..+|++..... --|.. ....++.-|. +.|.+++|..-|-+.-+.|.-. |... -|-.+.+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888887778888776522 23333 3345566553 5678888765444443333222 3222 3556677
Q ss_pred HHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038364 849 LLGKAGY----LDEAWDFIRTMPFKPDATIWGALLGSCRIH 885 (1076)
Q Consensus 849 ~l~r~G~----l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~ 885 (1076)
++.++|- -.||.- ....|.......|+.+|...
T Consensus 281 MLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc
Confidence 7777762 222211 12345666778888888654
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.43 E-value=3.7e+02 Score=33.37 Aligned_cols=94 Identities=18% Similarity=0.175 Sum_probs=50.3
Q ss_pred HHHHHHHHHHH-hCCChHHHHHHHHhcC----CCChh-----HHHHHHHHHHhCCChHHHHHHHHHHHhCC----CCCCh
Q 038364 432 SVCNCLISMYS-RNNKLELATRVFDSMK----DHNLS-----SWNSMISSYTGLGYVDVAWSLFNKMNSSR----IQPDI 497 (1076)
Q Consensus 432 ~v~n~Li~~y~-k~g~~~~A~~lf~~m~----~~d~~-----s~n~lI~~~~~~g~~~~A~~lf~~M~~~g----~~pd~ 497 (1076)
.++-.+...|. ...+++.|+..+++.. +++.. .-..++..|.+.+... |....++..+.- ..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34555555554 5677888888777651 22221 2234556666666555 777777765431 11112
Q ss_pred hhHHHH-HHHHHhcCChhhHHHHHHHHHhc
Q 038364 498 ITWNCL-LSGHFTHGSYQNVLTLLRGMQSL 526 (1076)
Q Consensus 498 ~ty~~L-i~~~~~~g~~~~Al~l~~~m~~~ 526 (1076)
..+..+ +..+...++...|++.++.+...
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~ 168 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQL 168 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222222 22222336777788887777643
No 325
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.82 E-value=2.4e+02 Score=31.06 Aligned_cols=58 Identities=9% Similarity=0.204 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHhc-----CCCChhHHHHHHHHHHhCCChHHHHHHH
Q 038364 428 ESNLSVCNCLISMYSRNNKLELATRVFDSM-----KDHNLSSWNSMISSYTGLGYVDVAWSLF 485 (1076)
Q Consensus 428 ~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m-----~~~d~~s~n~lI~~~~~~g~~~~A~~lf 485 (1076)
.++..+--.+|..+++.+++..-.++.+.- +..|.-.|...|..-.+.|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 344445555556666666666555555543 2235556666666666666654443333
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.27 E-value=3.9e+02 Score=33.20 Aligned_cols=190 Identities=14% Similarity=0.120 Sum_probs=96.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCCH--HHHHHHHHHHH-ccCCcHHHHHHHHHHHHhCCCCCH----
Q 038364 360 DDLLWNEIIMVKLRNEKWENAIKLFREMQF-SSAKAIS--RTIVKMLQACA-KVGAFHEGKQIHGYVLKSALESNL---- 431 (1076)
Q Consensus 360 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~p~~--~t~~~ll~a~~-~~g~~~~a~~i~~~~~~~g~~~d~---- 431 (1076)
++..|..||. -|+..++-..+ ....|.. .+...+.+.+. ...+++.|+..+++.+..--.++.
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 4555666665 34555555542 2223322 23333333333 445677777777655433222211
Q ss_pred -HHHHHHHHHHHhCCChHHHHHHHHhcC----CCChhHH----HHH-HHHHHhCCChHHHHHHHHHHHhCC---CCCChh
Q 038364 432 -SVCNCLISMYSRNNKLELATRVFDSMK----DHNLSSW----NSM-ISSYTGLGYVDVAWSLFNKMNSSR---IQPDII 498 (1076)
Q Consensus 432 -~v~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~----n~l-I~~~~~~g~~~~A~~lf~~M~~~g---~~pd~~ 498 (1076)
.....++..|.+.+... |.+..++.. ......| .-+ +.-+...++...|++.++.+...- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 12334555666655554 766666542 1111222 222 222333378888888888876542 333444
Q ss_pred hHHHHHHHHH--hcCChhhHHHHHHHHHhcCC---------CCCcccHHHHHHHHH--hcCchHHHHHHHHHHH
Q 038364 499 TWNCLLSGHF--THGSYQNVLTLLRGMQSLGF---------RPNGSSVSVVLQAVT--ELRLLKYGRESHGYIL 559 (1076)
Q Consensus 499 ty~~Li~~~~--~~g~~~~Al~l~~~m~~~gi---------~pd~~t~~~ll~a~~--~~g~~~~a~~i~~~~~ 559 (1076)
.+-.++.+.. +.+..+++++.++++..... .|--.++..++..|+ ..|+++.+++....+.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555544 34566778888877743221 123345666666654 4566666666555443
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.93 E-value=3.8e+02 Score=32.90 Aligned_cols=44 Identities=11% Similarity=-0.057 Sum_probs=24.2
Q ss_pred CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc----CChHHHHHHHHHHHh
Q 038364 887 HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS----NRWEDVERLRHSMDE 934 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~----G~~~eA~~~~~~m~~ 934 (1076)
+.+.|...+.++-+.. +.....|+.++... . +..|.+.+++..+
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASE 537 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHh
Confidence 4555555555554443 44555556655432 2 5677777766644
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=61.89 E-value=29 Score=31.24 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=37.2
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 865 TMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 865 ~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
.|..-|++.+..+.|.||++-+|+..|.++++-+...-..+...|-.+.
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3457799999999999999999999999999987643333334454443
No 329
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.64 E-value=1e+02 Score=32.73 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=8.3
Q ss_pred CCCHHHHHHHHhhc
Q 038364 580 NDCLQNAQEVFDNM 593 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m 593 (1076)
.+.+++|.++|.+.
T Consensus 27 ~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 27 SNKYEEAAELYERA 40 (288)
T ss_pred CcchHHHHHHHHHH
Confidence 34566666666554
No 330
>PRK09687 putative lyase; Provisional
Probab=61.31 E-value=2.6e+02 Score=30.86 Aligned_cols=192 Identities=9% Similarity=-0.035 Sum_probs=82.0
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCHHHHHHH
Q 038364 327 FDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKW----ENAIKLFREMQFSSAKAISRTIVKM 402 (1076)
Q Consensus 327 ~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~----~eAl~lf~~M~~~g~~p~~~t~~~l 402 (1076)
+|..+.-..+..+.+.|..+....+..-+.. .|...-...+.++.+-|+. ++++.++..+... .++...-.+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~-~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSS-KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhC-CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 3444444444444444443222222222222 4444444445555555542 3455555555322 2344444444
Q ss_pred HHHHHccCCcH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCC-ChH
Q 038364 403 LQACAKVGAFH--EGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLG-YVD 479 (1076)
Q Consensus 403 l~a~~~~g~~~--~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g-~~~ 479 (1076)
+.+++..+.-. ........+...-..++..+--..+.++++.++.+....+..-+..+|...-..-+.++.+.+ ...
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 44444332111 011122222222223455555566666666665443333334444444443334444444432 133
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038364 480 VAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQS 525 (1076)
Q Consensus 480 ~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~ 525 (1076)
++...+..+... +|...-..-+.++.+.++ ..|+..+-+..+
T Consensus 192 ~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~ 233 (280)
T PRK09687 192 DIREAFVAMLQD---KNEEIRIEAIIGLALRKD-KRVLSVLIKELK 233 (280)
T ss_pred HHHHHHHHHhcC---CChHHHHHHHHHHHccCC-hhHHHHHHHHHc
Confidence 455555554432 344445555555555555 334444444443
No 331
>PRK10941 hypothetical protein; Provisional
Probab=61.22 E-value=26 Score=38.37 Aligned_cols=62 Identities=15% Similarity=-0.001 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+.-.+-+|.+.|.+..|..-++.-.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34667788999999999999999999999999988889999999999999999988877543
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=61.09 E-value=14 Score=24.12 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.|..+...+...|+++.|...+++.+++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555566666666666666666665553
No 333
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=59.02 E-value=31 Score=31.40 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 866 MPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 866 m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
+..-|++.+..+.|.||++.+|+..|.++++-+...-.+....|-.+.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 457799999999999999999999999999988765444333555444
No 334
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.19 E-value=5e+02 Score=33.09 Aligned_cols=187 Identities=14% Similarity=0.139 Sum_probs=103.4
Q ss_pred HhhcCCHHHHHHHHHhcC----CCCh-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 038364 748 YSKSGNLKSAREVFRKSA----NKTL-------ASWNCMIM-GFAIYGNGKEAILLFHELLET----GFQPDAITFTALL 811 (1076)
Q Consensus 748 y~k~G~~~~A~~vf~~m~----~~d~-------~s~n~li~-~~~~~g~~~~Al~l~~~M~~~----g~~Pd~~t~~~ll 811 (1076)
.....++++|..+..+.. .++. ..|+++-. .....|+.++|+++.+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888887776533 3222 35666643 334567888888888776653 2233344555555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHH-----HHHHhcCC--HHHHHHHHHhC-----CCCCC----HHHH
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV-----DLLGKAGY--LDEAWDFIRTM-----PFKPD----ATIW 875 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li-----~~l~r~G~--l~eA~~l~~~m-----~~~pd----~~~~ 875 (1076)
.+..-.|++++|..+..+..+. .-.-+..++..++ ..+...|. .++.+..+... +-+|- ..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6666788899988877665442 2223344443332 23456663 22222223222 11221 2344
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhcC----CCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 876 GALLGSCRIHGHLEYAEIASRRLFKL----EPCNS---ANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 876 ~~Ll~a~~~~g~~e~A~~~~~~l~~l----~P~~~---~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
..++.++.+ .+.+..-+...+++ .|..- ..+.+|+.++...|+.++|...+.++......
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 444444433 45555444444432 23222 12347889999999999999999988665443
No 335
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.16 E-value=4.3e+02 Score=32.38 Aligned_cols=119 Identities=12% Similarity=0.128 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCccchhhhhhhhhh-cCChhHHHHHHHHhHhcCCCCchHHHHHHH--HHHhcCCChhHHHH
Q 038364 613 LFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSI-WGQSKEALVIIHHMKNSGIYPNVVTWTSLI--SGSLQNENYRESLK 689 (1076)
Q Consensus 613 ~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k-~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI--~~~~~~g~~~eAl~ 689 (1076)
+.+.|+.++.+.-+.| .|+...+-..+..... ..+...|.++|....+.|..+-. -+-++. .+.....+.+.|..
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~-~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAI-YRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHH-HHHHHHHHhCCCcCCCHHHHHH
Confidence 4455666666665555 2344333333322222 24566777777776665533221 111111 12223345666777
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCC
Q 038364 690 FFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI 735 (1076)
Q Consensus 690 l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~ 735 (1076)
++++..+.| .|-..--...+..+.. +..+.+...+..+.+.|.+
T Consensus 386 ~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 386 YYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 777766665 3332222233333333 5555555555555544433
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=58.16 E-value=19 Score=24.94 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
..|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998754
No 337
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.12 E-value=2.9e+02 Score=32.17 Aligned_cols=20 Identities=5% Similarity=0.064 Sum_probs=11.0
Q ss_pred HHHHHhCCChHHHHHHHHhc
Q 038364 438 ISMYSRNNKLELATRVFDSM 457 (1076)
Q Consensus 438 i~~y~k~g~~~~A~~lf~~m 457 (1076)
+...++.|+.+.+..+++.-
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcC
Confidence 34445566666666655543
No 338
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.85 E-value=75 Score=28.90 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 038364 412 FHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSS 491 (1076)
Q Consensus 412 ~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~ 491 (1076)
.++|..|-+.+...+-. ...+--.-+..+.+.|++++|..+.+.++.||+.+|-++-.+ +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555555444322 223333334456677888888888888888888888776553 446666666666666555
Q ss_pred C
Q 038364 492 R 492 (1076)
Q Consensus 492 g 492 (1076)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=57.75 E-value=12 Score=25.70 Aligned_cols=28 Identities=0% Similarity=-0.060 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667889999999999999999988653
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=56.40 E-value=71 Score=32.46 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=26.6
Q ss_pred chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 888 LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 888 ~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
+++|...|+++.+.+|+| +.|..-..+. +.|-++-.++...+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 466788888889999987 4555444443 3466666666555543
No 341
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.20 E-value=4e+02 Score=31.05 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=39.4
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccch---hhhhhhhhhc
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW---NSLVSGYSIW 646 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~---~~Li~~y~k~ 646 (1076)
.+...+..|+.+-+..+++.-.. +|..-++.+..+ +..|+. ++.+.+.+.|..|+...- .+++...++.
T Consensus 138 pLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A-~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~ 212 (413)
T PHA02875 138 PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIA-MAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIEN 212 (413)
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHc
Confidence 34444555666555555543322 222223333322 333443 344445566666665432 2344434455
Q ss_pred CChhHHHHHHHHhHhcCCCCch
Q 038364 647 GQSKEALVIIHHMKNSGIYPNV 668 (1076)
Q Consensus 647 g~~~~A~~lf~~m~~~gi~pd~ 668 (1076)
|+.+- .+.+.+.|..++.
T Consensus 213 ~~~~i----v~~Ll~~gad~n~ 230 (413)
T PHA02875 213 NKIDI----VRLFIKRGADCNI 230 (413)
T ss_pred CCHHH----HHHHHHCCcCcch
Confidence 55443 3344445555553
No 342
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=54.96 E-value=67 Score=29.04 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHH-HhCCCCCHHHHHHHH
Q 038364 377 WENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVL-KSALESNLSVCNCLI 438 (1076)
Q Consensus 377 ~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~-~~g~~~d~~v~n~Li 438 (1076)
.-++.+-++.+......|++....+.|+||.+.+|+..|..+++.+. |.|. +..+|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 34555666666677788999999999999999999999999988766 3332 333555544
No 343
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.95 E-value=3.2e+02 Score=29.83 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=44.8
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHH
Q 038364 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITF--TALLAA 813 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~--~~ll~a 813 (1076)
-|+.....+...|.+.|++.+|+.-|-...+++...+-.++.-.... |...+.-.| .+++ -
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~----------------~~~~e~dlfi~RaVL-~ 150 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK----------------GYPSEADLFIARAVL-Q 150 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH----------------TSS--HHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh----------------cCCcchhHHHHHHHH-H
Confidence 36778888999999999999999887554333332222222222222 222222222 2233 2
Q ss_pred HHhcCCHHHHHHHHHHhhhc
Q 038364 814 CKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~ 833 (1076)
|...+++..|...++...+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 56678888888887776653
No 344
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.74 E-value=1.3e+02 Score=27.41 Aligned_cols=87 Identities=14% Similarity=0.007 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 038364 310 FWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQF 389 (1076)
Q Consensus 310 ~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 389 (1076)
.++|.-|-+.+...|-. ...|.-.-+..+...|++.+|..+.+.++. ||...|-++-.+ +.|..+++..-+.+|..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~-pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCY-PDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCC-chHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 34444454444443321 333333334566778999999999999988 999999887653 66777777777777877
Q ss_pred CCCCCCHHHHHH
Q 038364 390 SSAKAISRTIVK 401 (1076)
Q Consensus 390 ~g~~p~~~t~~~ 401 (1076)
+| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 555555544
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=54.15 E-value=1.1e+02 Score=28.11 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHH
Q 038364 686 ESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLI 745 (1076)
Q Consensus 686 eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li 745 (1076)
+..+-++.+....+.|+..+..+.|.||.+.+++..|.++++-+... .......|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 55566666777788899999999999999999999999998877653 222222555444
No 346
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=53.31 E-value=26 Score=25.37 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
+++.|...|...|++++|+.++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 556666677777777777777666553
No 347
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=52.91 E-value=75 Score=36.78 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=53.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC--C
Q 038364 791 LFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP--F 868 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~--~ 868 (1076)
+|.-++...-.|+.+...+.+ ..+.|.++.+.+.+..... -+.....+..|++.-+.+-|++++|..+-..|- .
T Consensus 312 ~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e 387 (831)
T PRK15180 312 LFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE 387 (831)
T ss_pred HHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence 344444443455555444333 3555666666655544432 122334455556666666666666666655551 0
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 869 KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
-.+..+.......-...|-++++...+++++.+.|.
T Consensus 388 ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 388 IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred cCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 112222222223344455566666666666665543
No 348
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.03 E-value=6.4e+02 Score=32.52 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 600 AWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 600 ~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
-|..||.-|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 478899999999999999999998875
No 349
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=52.01 E-value=17 Score=24.86 Aligned_cols=28 Identities=25% Similarity=0.096 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 877 ALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 877 ~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.+..++...|+.++|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556677778888888888888887775
No 350
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=51.54 E-value=15 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=12.9
Q ss_pred ChhhHHHHHHHHHhcCChhhHH
Q 038364 496 DIITWNCLLSGHFTHGSYQNVL 517 (1076)
Q Consensus 496 d~~ty~~Li~~~~~~g~~~~Al 517 (1076)
|..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5556666666666666665553
No 351
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.60 E-value=1.4e+02 Score=30.93 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=21.5
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCchhH
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNSANY 909 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~~~y 909 (1076)
+|.+...++.|+.-|+++++++|....+-
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 45666778888888888888888764443
No 352
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=50.37 E-value=1.9e+02 Score=28.47 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=10.3
Q ss_pred HHhcCChhhHHHHHHHHHhc
Q 038364 507 HFTHGSYQNVLTLLRGMQSL 526 (1076)
Q Consensus 507 ~~~~g~~~~Al~l~~~m~~~ 526 (1076)
+.+.|++++|+++|++..+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 34455555555555555444
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.70 E-value=1e+03 Score=34.13 Aligned_cols=147 Identities=8% Similarity=-0.023 Sum_probs=87.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhhc----CCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhh
Q 038364 572 SLMDMYVKNDCLQNAQEVFDNM----KNRN--IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSI 645 (1076)
Q Consensus 572 aLi~~y~k~g~~~~A~~lf~~m----~~~d--~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k 645 (1076)
.|-.+=.+|+.+..|...|++- .+.+ ..-+-.+...|+..++++....+...-. -..++...|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~------a~~sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF------ADPSLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh------cCccHHHHHHHHHh
Confidence 3444667888999999888883 2222 2234445558888888887776665311 11233445666777
Q ss_pred cCChhHHHHHHHHhHhcCCCCc-hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHH-HHHHHhcCCCchhHH
Q 038364 646 WGQSKEALVIIHHMKNSGIYPN-VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSS-LLQTCGGLGLLQNGK 723 (1076)
Q Consensus 646 ~g~~~~A~~lf~~m~~~gi~pd-~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~-lL~a~~~~g~~~~a~ 723 (1076)
.|++..|...|+.+.+. .|+ ..+++-++......|.++.++...+-.... ..+....+++ =+.|--+.++++..+
T Consensus 1462 ~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 89999999999999875 444 667777776666667776666644443321 1222222222 222335556666665
Q ss_pred HHHH
Q 038364 724 EIHC 727 (1076)
Q Consensus 724 ~i~~ 727 (1076)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5544
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.40 E-value=4e+02 Score=29.39 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHH
Q 038364 614 FVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHH 658 (1076)
Q Consensus 614 ~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~ 658 (1076)
..+|+++|.-+.++. --.++-+-++.++-...+..+|...|..
T Consensus 149 s~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHH
Confidence 467888888887652 2345556677777777777777666654
No 355
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.30 E-value=13 Score=41.24 Aligned_cols=88 Identities=11% Similarity=0.128 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 038364 853 AGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRH 930 (1076)
Q Consensus 853 ~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~ 930 (1076)
.|.+++|.+.+... +..| ....+..-.+++.+.+....|++-+..+++++|+...-|-.-...-...|.|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555543 2333 233444444556677777777777888888888877777777777777888888888888
Q ss_pred HHHhCCCccC
Q 038364 931 SMDEVGVKSV 940 (1076)
Q Consensus 931 ~m~~~g~~~~ 940 (1076)
..-+.++...
T Consensus 207 ~a~kld~dE~ 216 (377)
T KOG1308|consen 207 LACKLDYDEA 216 (377)
T ss_pred HHHhccccHH
Confidence 7777665543
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.83 E-value=7.1e+02 Score=32.13 Aligned_cols=128 Identities=17% Similarity=0.170 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038364 670 TWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYS 749 (1076)
Q Consensus 670 ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~ 749 (1076)
.|..|+..|...|+.++|++++.+.....-.-|... .+.-+.+.+.+.+.+-+ +. .|+--|+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~~~-~~----~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLGAE-NL----DLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhccc-ch----hHHHHHh
Confidence 478899999999999999999998865321011100 01111233333332221 11 1111111
Q ss_pred h---cCCHHHHHHHHHhcCCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038364 750 K---SGNLKSAREVFRKSANKTLASWN-CMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACK 815 (1076)
Q Consensus 750 k---~G~~~~A~~vf~~m~~~d~~s~n-~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~ 815 (1076)
. ..+.+...++|-.-......+.+ .-+-.|......+-++..++.+....-.++..-.+.++.-|.
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 1 23344445555430000111111 123345566666777777777776655666665666655554
No 357
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=48.27 E-value=5.8e+02 Score=30.95 Aligned_cols=129 Identities=12% Similarity=0.142 Sum_probs=70.9
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 038364 360 DDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTI-VKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLI 438 (1076)
Q Consensus 360 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li 438 (1076)
+...|+.+|..--+....+.+...+..++.. .|..+-| -....-=.+.|..+.+..+++..+. |+...+..|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4456776666544444444555555555532 3433321 2222222355666666666666553 3344555555554
Q ss_pred HHHH-hCCChHHHHHHHHhcCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 038364 439 SMYS-RNNKLELATRVFDSMKD------HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSS 491 (1076)
Q Consensus 439 ~~y~-k~g~~~~A~~lf~~m~~------~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~ 491 (1076)
.... ..|+.+..+..|++... .....|...|.--...++......++++.++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4433 34666666667766532 23346777777666777777777777777765
No 358
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.02 E-value=6.1e+02 Score=31.15 Aligned_cols=90 Identities=9% Similarity=-0.010 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhc
Q 038364 569 VGTSLMDMYVKNDC--LQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIW 646 (1076)
Q Consensus 569 v~~aLi~~y~k~g~--~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~ 646 (1076)
.|..-++-+..|++ ......++.+.+-++...-.-++..|.+.|..+.|.++.+.+-..-+ ...-|..-+..+.++
T Consensus 374 lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra 451 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRA 451 (566)
T ss_dssp THHHHHHHHHS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHC
Confidence 34444444444442 44445555666656666667778888888888888888877654321 112344455555666
Q ss_pred CChhHHHHHHHHhH
Q 038364 647 GQSKEALVIIHHMK 660 (1076)
Q Consensus 647 g~~~~A~~lf~~m~ 660 (1076)
|+......+-+.+.
T Consensus 452 ~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 452 GDYSLVTRIADRLL 465 (566)
T ss_dssp --------------
T ss_pred CCHHHHHHHHHHHH
Confidence 66555544444443
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=47.87 E-value=5.5e+02 Score=30.57 Aligned_cols=165 Identities=8% Similarity=0.096 Sum_probs=90.7
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN--KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAAC 814 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~ 814 (1076)
|.....++++.++..-++.-.+.+-.+|.. .+-..|-.++..|..+ ..++-..+|+++.+ ..-|.+.+.--|..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHH
Confidence 334445566666666666666666666553 3445666677777777 55666777777776 344555555555554
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCC------cccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPT------IEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPDATIWGALLGSCRI 884 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~------~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd~~~~~~Ll~a~~~ 884 (1076)
...++.+.+..+|..+.. .+.|. .+.|..++..- ..+.|.-+.+..+. +...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 455677777777776653 33332 22444444322 22334444444333 222223333333344566
Q ss_pred cCCchHHHHHHHHHhcCCCCCchh
Q 038364 885 HGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 885 ~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
..|+.+|+++...+++.+..|.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhH
Confidence 677777777777777766555333
No 360
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.47 E-value=7.1e+02 Score=31.74 Aligned_cols=178 Identities=10% Similarity=0.116 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcC
Q 038364 602 NSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQN 681 (1076)
Q Consensus 602 n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~ 681 (1076)
.+.-..+..+|+.++...+-.-|.. |..++.-+.+.|.+++|++++..-.. |. ..--+--. ...
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~----~e--l~yk~ap~-Li~ 571 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRN----PE--LFYKYAPE-LIT 571 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccc----hh--hHHHhhhH-HHh
Confidence 3344445556666666655555442 34566666777777777776654321 11 10000000 001
Q ss_pred CChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCc---hhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHH
Q 038364 682 ENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLL---QNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAR 758 (1076)
Q Consensus 682 g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~---~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 758 (1076)
..+.+-...+..+. -.-+..-...+++.+.+.+.. ..+..........--..++.++|.++.+|++..+-+.-.
T Consensus 572 ~~p~~tV~~wm~~~---d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~ 648 (911)
T KOG2034|consen 572 HSPKETVSAWMAQK---DLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLL 648 (911)
T ss_pred cCcHHHHHHHHHcc---ccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHH
Confidence 11222222222221 122222333445555444322 223333333333333457888899999988765544333
Q ss_pred HHHH--hcCCCChHHHHHHHHHHHHcCCHH------HHHHHHHHHHHC
Q 038364 759 EVFR--KSANKTLASWNCMIMGFAIYGNGK------EAILLFHELLET 798 (1076)
Q Consensus 759 ~vf~--~m~~~d~~s~n~li~~~~~~g~~~------~Al~l~~~M~~~ 798 (1076)
.+-. .+......-.+--+..|.+.+.-. -++++|.++.+.
T Consensus 649 ~le~~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdl 696 (911)
T KOG2034|consen 649 YLEIIKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDL 696 (911)
T ss_pred HHHHHhhccccceecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHH
Confidence 3222 222332222244556666665443 344555555543
No 361
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.71 E-value=1e+02 Score=24.54 Aligned_cols=27 Identities=11% Similarity=0.003 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
....++-.+.+.|++++|.+..+.+.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 356788889999999999999999865
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.72 E-value=60 Score=35.40 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 875 WGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 875 ~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++-...+|...|.+.+|..+.++++.++|-+...+-.|.++|+..|+--+|.+-+++|.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 334456789999999999999999999999999999999999999998888888888743
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=44.34 E-value=89 Score=32.43 Aligned_cols=70 Identities=13% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC----CchhHHHHHHHHHHcCChHHHH
Q 038364 857 DEAWDFIRTMPFKP--DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC----NSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 857 ~eA~~l~~~m~~~p--d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~----~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
++|.+.|-.+.-.| +....-..+..+....|.++++.++-+++++.+. |++.+..|+.+|.+.|++++|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44555555553222 2233334445555577788888888888776322 4677888888888888877764
No 364
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.64 E-value=3.6e+02 Score=28.67 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=60.9
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 771 SWNCMIMGFAI--YGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 771 s~n~li~~~~~--~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
.|...+.|+-. ++++++|++++-+- .+.|+... -++.++...|+.+.|..+++.+.- ...+.+....+..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 34455555543 56677777766322 23333332 256666677888888888876531 1111222233333
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038364 849 LLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g 886 (1076)
. ..+|.+.||..+.+....+-....|..++..|....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 4 566888888888887653222447777777766544
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.79 E-value=5.3e+02 Score=30.20 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=33.4
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 038364 772 WNCMIMGFAI---YGNGKEAILLFHELLETGFQPDAITFTALLAACKNSG 818 (1076)
Q Consensus 772 ~n~li~~~~~---~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g 818 (1076)
...+++++.+ .++.+.|+.++.+|.+.|..|..+.-..+..++-..|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4445555554 4789999999999999999998776655555544444
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.30 E-value=4.9e+02 Score=28.36 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhh
Q 038364 566 DLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSI 645 (1076)
Q Consensus 566 d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k 645 (1076)
|+.....+...|.+.|++.+|+.-|-.-.+++...+-.++.-....|...++--...+ .+-.|.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R---------------aVL~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR---------------AVLQYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH---------------HHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH---------------HHHHHHH
Confidence 6677788889999999999999988765555444443344444444444433222221 2234555
Q ss_pred cCChhHHHHHHHHhHh
Q 038364 646 WGQSKEALVIIHHMKN 661 (1076)
Q Consensus 646 ~g~~~~A~~lf~~m~~ 661 (1076)
.+++..|...|+...+
T Consensus 154 l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 154 LGNLRDANELFDTFTS 169 (260)
T ss_dssp TTBHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 6788888888777654
No 367
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=42.17 E-value=45 Score=29.78 Aligned_cols=42 Identities=10% Similarity=0.062 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 893 IASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 893 ~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
..+++.++.+|+|...-..++..|...|++++|.+.+-.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666666665543
No 368
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.93 E-value=18 Score=41.93 Aligned_cols=90 Identities=11% Similarity=0.063 Sum_probs=45.7
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcccHH-HHHHHHHhcCCHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHHcCCchH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYS-CMVDLLGKAGYLDEAWDFIRT-MPFKPDAT-IWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~-~li~~l~r~G~l~eA~~l~~~-m~~~pd~~-~~~~Ll~a~~~~g~~e~ 890 (1076)
....+.++.|..++.++.+ +.|+-.+|- --..++.+.+++..|..=..+ +...|.-. .|.-=..+|...+.+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 3445566666666666653 355533332 222455555555555433332 23333322 22222345555666666
Q ss_pred HHHHHHHHhcCCCCCc
Q 038364 891 AEIASRRLFKLEPCNS 906 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~ 906 (1076)
|...++....+.|+++
T Consensus 91 A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHhhhcCcCcH
Confidence 6666666666666653
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.29 E-value=93 Score=32.85 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCchH-------HHHHHHHHhcCC--CC----CchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 874 IWGALLGSCRIHGHLEY-------AEIASRRLFKLE--PC----NSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~-------A~~~~~~l~~l~--P~----~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
++.-+...|+..|+-+. |...|+++++.+ |. ......+++.+..+.|+.+||.+.+.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45555666787787544 444555555433 22 2356778999999999999999999998544
No 370
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.67 E-value=83 Score=33.45 Aligned_cols=88 Identities=17% Similarity=0.035 Sum_probs=64.4
Q ss_pred HHHHHhcCCHHHHHHHHHhC---------CCCCCHHHHHHH-----------HHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 847 VDLLGKAGYLDEAWDFIRTM---------PFKPDATIWGAL-----------LGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m---------~~~pd~~~~~~L-----------l~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+-+.+.|++.||..-+.+. .-+|...-|.-| -.++...|++-++++-...++..+|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34566777777776655443 245655555332 2334567888899999999999999999
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.+|.-.+.+.+..=+.+||..-+.+..+
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 9999999999888888888888888754
No 371
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.34 E-value=6.3e+02 Score=29.05 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=51.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC--cccHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCC------HHHHHHHHH
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPT--IEHYSCMVDLLG-KAGYLDEAWDFIRTMPF--KPD------ATIWGALLG 880 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~--~~~y~~li~~l~-r~G~l~eA~~l~~~m~~--~pd------~~~~~~Ll~ 880 (1076)
..+.+.|-+..|.++.+-+. .+.|+ +.....+||.|+ ++++++--+++++.... ..+ ...|+..+.
T Consensus 111 ~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 34667777777777776664 34443 445555677665 66777766666665422 111 123333333
Q ss_pred HHHHcCCc---------------hHHHHHHHHHhcCCC
Q 038364 881 SCRIHGHL---------------EYAEIASRRLFKLEP 903 (1076)
Q Consensus 881 a~~~~g~~---------------e~A~~~~~~l~~l~P 903 (1076)
-+ ..++. +.|...+++++..-|
T Consensus 188 ~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 188 YF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HH-HhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 33 33444 788888888877766
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.28 E-value=1.4e+02 Score=34.75 Aligned_cols=135 Identities=10% Similarity=0.093 Sum_probs=89.2
Q ss_pred hcCCHHHHH-HHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHH
Q 038364 816 NSGLVEEGW-KYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 816 ~~g~~~eA~-~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
..|++-.|- ++|+.+.. +.-.|+ +..........-|.++.|...+.... +.....+...++......|+.+.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~-~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-QQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHh-CCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 345655554 45555543 343444 43344455678899999999988763 3455667888888889999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEE
Q 038364 893 IASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVF 955 (1076)
Q Consensus 893 ~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f 955 (1076)
..++.++.-+-++++....-+-.-...|-++++...+++.-....+. ..-|+..-....-|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~--~~g~v~~~~~~~~~ 438 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET--QSGWVNFLSSTQYF 438 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh--cccceeeeccceec
Confidence 99999998776666665544444455677899999998886544333 33455543333333
No 373
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=40.01 E-value=43 Score=21.97 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=13.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 038364 742 TGLIDMYSKSGNLKSAREVFR 762 (1076)
Q Consensus 742 ~~Li~~y~k~G~~~~A~~vf~ 762 (1076)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345666666677766666654
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=39.58 E-value=1.2e+02 Score=36.27 Aligned_cols=98 Identities=14% Similarity=0.025 Sum_probs=64.6
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHH
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPT--IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~--~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
.|+.-.|...+.... ...|. -.....|...+.+.|...+|-.++.+. . ....+.++.++.+++....|++.|+
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 455566665555443 22332 223344566666777777777776553 1 2334567778888888889999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 893 IASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 893 ~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
+.++++++++|+++..-..|-.+-|
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999998877666655544
No 375
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=38.22 E-value=80 Score=33.06 Aligned_cols=62 Identities=23% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+.-+..+.+.+++++|+...++- .-+| |...-..|..-++..|++++|..-++-+-++.|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44456677777777777766543 3344 33455556677777777777777777777777765
No 376
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=38.13 E-value=1.2e+02 Score=31.71 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSL 526 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~ 526 (1076)
|.+..|+.+.+.+...+|+.+.++-.+..+. |..+-..++..+|-.|++++|+.-++-.-+.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 3455677888888888888888888777665 7777888888888888888888777665543
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=37.30 E-value=57 Score=20.85 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 907 ANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
..|..++..|...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999987754
No 378
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.09 E-value=2.4e+02 Score=33.88 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcCC--CChH---HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 742 TGLIDMYSKSGNLKSAREVFRKSAN--KTLA---SWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 742 ~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~---s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
..|+.-|.+++++++|..++..|.= -... +.+.+.+.+.+..-..+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 3577789999999999999998861 1222 333444555555545555555555554
No 379
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.52 E-value=3e+02 Score=25.56 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 038364 410 GAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMN 489 (1076)
Q Consensus 410 g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~ 489 (1076)
...++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||+.+|-++-. .+.|..+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 355677777777766653 233344444555677888888854445556788888876654 35677777777777776
Q ss_pred hCC
Q 038364 490 SSR 492 (1076)
Q Consensus 490 ~~g 492 (1076)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 554
No 380
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=36.34 E-value=1.7e+02 Score=30.41 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=24.7
Q ss_pred CCCchhHHHHHHHHHHc---CCCCChhhHHHHHHHHhhcCCHHHHH
Q 038364 716 LGLLQNGKEIHCLCLKN---GFIKDAYVATGLIDMYSKSGNLKSAR 758 (1076)
Q Consensus 716 ~g~~~~a~~i~~~~~~~---g~~~d~~~~~~Li~~y~k~G~~~~A~ 758 (1076)
..+.+++++++-.+++. +-.+|+.++.+|++.|-+.|+.+.|.
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44555555555444432 22456666777777777777776664
No 381
>PF15469 Sec5: Exocyst complex component Sec5
Probab=35.88 E-value=3.3e+02 Score=27.69 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=14.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 038364 810 LLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
-|.-|...|+++.+...|.+...
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHH
Confidence 34556666777777766665543
No 382
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.52 E-value=3.4e+02 Score=25.20 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 547 LLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 547 ~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
..++|..|.+++...+- ....+.-.-+..+.+.|++++|...=.....||...|-++-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34556666665555543 223333333445666777777744444444567766665533 345555555555555543
Q ss_pred c
Q 038364 627 E 627 (1076)
Q Consensus 627 ~ 627 (1076)
.
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 383
>PRK11619 lytic murein transglycosylase; Provisional
Probab=35.37 E-value=9.9e+02 Score=29.91 Aligned_cols=378 Identities=9% Similarity=-0.011 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 324 GFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKML 403 (1076)
Q Consensus 324 g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll 403 (1076)
+......+...-+..+++.++..+..+ |..-+. .+.........+....|+.++|.+....+-..| ...+.....++
T Consensus 94 ~~P~~~~Lr~~~l~~La~~~~w~~~~~-~~~~~p-~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~ 170 (644)
T PRK11619 94 TLPPARSLQSRFVNELARREDWRGLLA-FSPEKP-KPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLF 170 (644)
T ss_pred CCchHHHHHHHHHHHHHHccCHHHHHH-hcCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHH
Q ss_pred HHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHH
Q 038364 404 QACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWS 483 (1076)
Q Consensus 404 ~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~ 483 (1076)
..+.+.|.+ +....-.-+......|+...|..+...+..........++..+..-...+....
T Consensus 171 ~~~~~~g~l-----------------t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~ 233 (644)
T PRK11619 171 SVWQQSGKQ-----------------DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR 233 (644)
T ss_pred HHHHHcCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhc--CChhhHHHHHHHH-HhcCCCCCcccHHHHHHHHHhcCc--hHHHHHHHHHH
Q 038364 484 LFNKMNSSRIQPDIITWNCLLSGHFTH--GSYQNVLTLLRGM-QSLGFRPNGSSVSVVLQAVTELRL--LKYGRESHGYI 558 (1076)
Q Consensus 484 lf~~M~~~g~~pd~~ty~~Li~~~~~~--g~~~~Al~l~~~m-~~~gi~pd~~t~~~ll~a~~~~g~--~~~a~~i~~~~ 558 (1076)
... |+...-..++.++.+. .+.+.|..++... ...+..++......-.-++.-... ..++.+.+...
T Consensus 234 ~~~--------~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~ 305 (644)
T PRK11619 234 TTG--------PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDV 305 (644)
T ss_pred ccC--------CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhc
Q ss_pred HHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccc
Q 038364 559 LRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVS 635 (1076)
Q Consensus 559 ~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t 635 (1076)
.... .|..+...-+..-.+.++++.+...|..|+. ....-.-=+..++...|+.++|...|++.. ...+
T Consensus 306 ~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a------~~~~ 377 (644)
T PRK11619 306 IMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM------QQRG 377 (644)
T ss_pred cccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh------cCCC
Q ss_pred h--------------------------------hhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCC
Q 038364 636 W--------------------------------NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNEN 683 (1076)
Q Consensus 636 ~--------------------------------~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~ 683 (1076)
| ..-+..+...|...+|...+..+.+. .+....-.+...-.+.|.
T Consensus 378 fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~ 454 (644)
T PRK11619 378 FYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQW 454 (644)
T ss_pred cHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC
Q ss_pred hhHHHHHHHHHhhcCCC--CChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhh
Q 038364 684 YRESLKFFIQMQQEDIK--PNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYV 740 (1076)
Q Consensus 684 ~~eAl~l~~~m~~~gi~--pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~ 740 (1076)
++.++............ -=...|...+...+..-.++.+.-.--.-.++++.|+...
T Consensus 455 ~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 455 WDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
No 384
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.15 E-value=6.2e+02 Score=27.48 Aligned_cols=178 Identities=12% Similarity=0.047 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHhcCC----CCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHHhcCC
Q 038364 752 GNLKSAREVFRKSAN----KTL---ASWNCMIMGFAIYGNGKEAILLFHELLET---GFQ--PDAITFTALLAACKNSGL 819 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~----~d~---~s~n~li~~~~~~g~~~~Al~l~~~M~~~---g~~--Pd~~t~~~ll~a~~~~g~ 819 (1076)
...++|..-|++..+ +.. .....||..+.+.|++++.++.|++|... .+. -..-+.++++.--+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456667666665442 222 23445777778888888888877777631 111 122345666665555555
Q ss_pred HHHHHHHHHHhhhcC----CCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-------HHHHHHHHHH
Q 038364 820 VEEGWKYFDSMSTDY----NIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-------FKPD-------ATIWGALLGS 881 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~----g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-------~~pd-------~~~~~~Ll~a 881 (1076)
.+--.++++.-.... +-..--.+-..+..+|...|.+..-.++++++. -+.| ..+|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 554444443322110 111112233456777777777777666666651 1111 2245555667
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCc--h----hHHHHHHHHHHcCChHHHHHHH
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNS--A----NYNLMMNLLAMSNRWEDVERLR 929 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~--~----~y~~L~~~y~~~G~~~eA~~~~ 929 (1076)
|-.+.+-..-..++++.+.+...-| - .--|=+.+..+.|+|++|..-|
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 7788888888889998876543222 1 1234456778889999886533
No 385
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=35.03 E-value=81 Score=33.51 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 854 GYLDEAWDFIRTM-PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 854 G~l~eA~~l~~~m-~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
.++++|..-+.+. -+.|... -|..=+-.+.+..+++.+..--.++++++|+.......|+..+.....+++|...+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3444444444332 4566664 4444555566677888888888888888888888888888888888888888888887
Q ss_pred HH
Q 038364 932 MD 933 (1076)
Q Consensus 932 m~ 933 (1076)
..
T Consensus 104 a~ 105 (284)
T KOG4642|consen 104 AY 105 (284)
T ss_pred HH
Confidence 63
No 386
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.32 E-value=4.3e+02 Score=30.53 Aligned_cols=30 Identities=17% Similarity=-0.137 Sum_probs=21.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 038364 778 GFAIYGNGKEAILLFHELLETGFQPDAITF 807 (1076)
Q Consensus 778 ~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~ 807 (1076)
.+...+++..|.++|+++.+....|+..++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~ 168 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTF 168 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhH
Confidence 445567888888888888887666555443
No 387
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=34.12 E-value=1.6e+02 Score=28.48 Aligned_cols=25 Identities=16% Similarity=0.020 Sum_probs=12.4
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
+|.+.+++++++++.+.+++.+|+|
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3444455555555555555555443
No 388
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.77 E-value=49 Score=41.18 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=30.5
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 850 LGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
...+|+++.|++.-++.. |..+|..|...-..+||.+.|+..|++..
T Consensus 653 aLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 345677777766666653 55667777777667777777776666553
No 389
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.42 E-value=1.7e+03 Score=32.08 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=77.2
Q ss_pred HHHhCCChHHHHHHHHhc----CCCCh--hHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 038364 440 MYSRNNKLELATRVFDSM----KDHNL--SSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSY 513 (1076)
Q Consensus 440 ~y~k~g~~~~A~~lf~~m----~~~d~--~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~ 513 (1076)
+-.+|+.+..|...|++- .+.+. .-+-.+...|..-+++|....+...-.. ..+...-|.-....|++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHHHHHHHHHhhccH
Confidence 445666666676666662 22221 1233344466666666665555543111 11222344555667777
Q ss_pred hhHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhCCCHHHHHHHHh
Q 038364 514 QNVLTLLRGMQSLGFRPN-GSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVG-TSLMDMYVKNDCLQNAQEVFD 591 (1076)
Q Consensus 514 ~~Al~l~~~m~~~gi~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~-~aLi~~y~k~g~~~~A~~lf~ 591 (1076)
+.|...|+.+.+.+ |+ ..+++.+++.....+.++...-..+..... ......-+ +.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 77777777777665 55 556776666666666665544432222211 11111112 222233345555555554444
Q ss_pred hcCCCCHhHHHHH
Q 038364 592 NMKNRNIVAWNSL 604 (1076)
Q Consensus 592 ~m~~~d~~~~n~l 604 (1076)
.++..+|.+.
T Consensus 1543 ---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVE 1552 (2382)
T ss_pred ---cccccchhHH
Confidence 4455566554
No 390
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=33.21 E-value=3.5e+02 Score=26.57 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=40.6
Q ss_pred CChhhHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038364 359 EDDLLWNEIIMVKLRNEK-WENAIKLFREMQFSSAKAISRTIVKMLQACAKV 409 (1076)
Q Consensus 359 ~d~~s~n~li~~~~~~g~-~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 409 (1076)
.|-.+|++++.+..+... ---++.+|.-|.+.+.+++..-|..++++|.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 466788888888866665 456788888888888889999999999988654
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.82 E-value=4e+02 Score=30.86 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=34.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHhhh
Q 038364 780 AIYGNGKEAILLFHELLETGFQPDAI--TFTALLAACK--NSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~--~~g~~~eA~~~~~~m~~ 832 (1076)
-.++++..|.++|+++... +.++.. .+..+..+|. ..-+.++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3677888888888888876 555554 3334444433 35667788888887654
No 392
>PHA03100 ankyrin repeat protein; Provisional
Probab=32.66 E-value=8.8e+02 Score=28.69 Aligned_cols=9 Identities=11% Similarity=-0.097 Sum_probs=3.9
Q ss_pred HHHCCCCCC
Q 038364 387 MQFSSAKAI 395 (1076)
Q Consensus 387 M~~~g~~p~ 395 (1076)
+.+.|..|+
T Consensus 54 Ll~~g~~~~ 62 (480)
T PHA03100 54 LLDNGADIN 62 (480)
T ss_pred HHHcCCCCC
Confidence 334454444
No 393
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=32.39 E-value=1.4e+02 Score=33.23 Aligned_cols=91 Identities=15% Similarity=0.071 Sum_probs=70.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTMP----FKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m~----~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
+|.-=.+-|.+..++..|...|.+-- -.|| .+.|+.-..+-...||+..++.-..+++.++|.+..+|.-=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 33344577889999999999997751 2233 44566666666677999999999999999999999999888888
Q ss_pred HHHcCChHHHHHHHHHH
Q 038364 916 LAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 916 y~~~G~~~eA~~~~~~m 932 (1076)
+....++++|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 88888877777665554
No 394
>PF15161 Neuropep_like: Neuropeptide-like
Probab=32.36 E-value=21 Score=28.08 Aligned_cols=18 Identities=33% Similarity=0.803 Sum_probs=13.2
Q ss_pred eccccCchhHHHHHHHHhh
Q 038364 1030 KNTRVCSDCHTAAKYMSLV 1048 (1076)
Q Consensus 1030 knlr~c~dch~~~k~~s~~ 1048 (1076)
-..|-|.|||.+- |+-+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 4579999999764 66544
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=32.20 E-value=3.1e+02 Score=24.43 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC--chhHHHHHHHHHHcCCh-HHHHHHHHHH
Q 038364 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN--SANYNLMMNLLAMSNRW-EDVERLRHSM 932 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~--~~~y~~L~~~y~~~G~~-~eA~~~~~~m 932 (1076)
|......+...+...|+++.|...+-.++..+|+. ...-..|..++...|.- .-+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 45566777788888999999999888888877654 56677888888888874 4666666666
No 396
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=31.43 E-value=1.2e+03 Score=29.72 Aligned_cols=390 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHHHHhcCC--CChhHHHHH-HHHHHhCCC----hHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038364 436 CLISMYSRNNKLELATRVFDSMKD--HNLSSWNSM-ISSYTGLGY----VDVAWSLFNKMNSSRIQPDIITWNCLLSGHF 508 (1076)
Q Consensus 436 ~Li~~y~k~g~~~~A~~lf~~m~~--~d~~s~n~l-I~~~~~~g~----~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~ 508 (1076)
.+|.-+.+||+++.|..+..+-.. +-...|-.. +.+|.++-. -+.-.++..+.-...-.|=..+--.+|.+|-
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~~~~~DpyK~AvY~iig~cd 409 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDFFEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELGRNSTDPYKLAVYKIIGGCD 409 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhccccCChHHHHHHHHHhcCc
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038364 509 THGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQE 588 (1076)
Q Consensus 509 ~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~ 588 (1076)
-..+..+.....+...=..+.+-...=.-..+.--+....+.-+.+...--..-+.++-..-.-....+.-+|.++.|..
T Consensus 410 ~~~~~~ev~~tiED~LW~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG~sYFt~ng~~p~~Yf~~LlLsgqfe~AI~ 489 (835)
T KOG2168|consen 410 LRRDLPEVADTIEDFLWFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYGESYFTNNGSQPLLYFQVLLLSGQFERAIE 489 (835)
T ss_pred cccccHHHHhHHHHHHHHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhHHHhhccCCCChHHHHHHHHHHHhHHHHHH
Q ss_pred HHhhcCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCC
Q 038364 589 VFDNMKNR--NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPD-LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIY 665 (1076)
Q Consensus 589 lf~~m~~~--d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd-~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~ 665 (1076)
.+.+.... |.+.....+.-|.-.+.....-+-.--|....-.+. ..-+.-||.+|.++=....+....+-.---...
T Consensus 490 fL~~~~~~~~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~~d~~~al~y~~~lr~~ 569 (835)
T KOG2168|consen 490 FLHREEPNRIDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFARLIIAYTKSFEYTDTRVALQYYYLLRLN 569 (835)
T ss_pred HHHhhcCCcchhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHHHHHHHHHHHHHhccchhhhheeeeeccc
Q ss_pred CchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHH
Q 038364 666 PNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLI 745 (1076)
Q Consensus 666 pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li 745 (1076)
+|..--+.++.+.+..=--.+ +-|..+.. .++||-.-...++.-+... ++.-..+.....
T Consensus 570 ~d~q~~~l~l~~v~~lVl~t~--~~f~~iLG-~i~~dG~r~~G~l~~f~~~-----------------~~~~~~i~~~vA 629 (835)
T KOG2168|consen 570 KDPQGSNLFLKCVCELVLETE--EEFDLILG-KIKPDGSREPGLLDEFLPL-----------------IEDLQKIILEVA 629 (835)
T ss_pred CChhHHHHHHHHHHHHHHhcc--ccHHHHhc-ccCCCCCCCcchHhhhccc-----------------hhhHHHHHHHHH
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038364 746 DMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
+-....|.+++|..++.. .|+++.|+++..+... .+.......-....++..-..
T Consensus 630 ~~a~~~G~~~~sI~LY~l------------------ag~yd~al~link~LS-------~~l~~~~~~~~n~erl~~La~ 684 (835)
T KOG2168|consen 630 SEADEDGLFEDAILLYHL------------------AGDYDKALELINKLLS-------QVLHSPTLGQSNKERLGDLAL 684 (835)
T ss_pred HHHHhcCCHHHHHHHHHH------------------hhhhhHHHHHHHHHHH-------HHHhhcccCCcchhhHHHHHH
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHH--------HhcCCHHHHHHHHHhCCCCC
Q 038364 826 YFDSMSTDYNIIPTIEHYSCMVDLL--------GKAGYLDEAWDFIRTMPFKP 870 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~~~~y~~li~~l--------~r~G~l~eA~~l~~~m~~~p 870 (1076)
-+..+...++..+....+.++.-++ .+.|.+++|++.++....-|
T Consensus 685 ~~~~~y~~~~~~~~~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP 737 (835)
T KOG2168|consen 685 SMNDIYESNKGDSAKVVVKTLSLLLDLVSFFDLYHNGEWEEALSILEHLDLIP 737 (835)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccC
No 397
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=31.06 E-value=6.1e+02 Score=26.22 Aligned_cols=144 Identities=14% Similarity=0.090 Sum_probs=73.1
Q ss_pred CCCCCChhhHHHHHHHHHhcCC----hhhHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCchHHHHHHHHHHHHcC
Q 038364 491 SRIQPDIITWNCLLSGHFTHGS----YQNVLTLLRGMQSLGFRPNGS----SVSVVLQAVTELRLLKYGRESHGYILRNG 562 (1076)
Q Consensus 491 ~g~~pd~~ty~~Li~~~~~~g~----~~~Al~l~~~m~~~gi~pd~~----t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 562 (1076)
.|..+|...++-++..+.+..- .+-++.+=.+.+..++.++-. ....-+.-|-+.||+..--
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg---------- 71 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLG---------- 71 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHh----------
Confidence 4566677777777776665543 333344334444444444322 2223334455555554322
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHH--------HHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc
Q 038364 563 LDYDLYVGTSLMDMYVKNDCLQNAQ--------EVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLV 634 (1076)
Q Consensus 563 ~~~d~~v~~aLi~~y~k~g~~~~A~--------~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ 634 (1076)
+..++...-|.+.++-. .+.++-+++..+.|-....+-++.-..+++-+.|-- .
T Consensus 72 --------~ly~nv~~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------R 133 (233)
T PF14669_consen 72 --------NLYINVKMGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------R 133 (233)
T ss_pred --------hHHhhHHhhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------H
Confidence 22233333344443332 333333344555666666666655444443333211 1
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhc
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNS 662 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~ 662 (1076)
.=.+++-.|-+.-++.+++++++.|.+.
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1135667777888888888888888653
No 398
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=30.93 E-value=1.6e+02 Score=28.84 Aligned_cols=80 Identities=8% Similarity=0.146 Sum_probs=58.9
Q ss_pred hhhhHHHHHHHccCChhhHHHHhhhcC---------CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHH
Q 038364 228 DMVKSLIFHYLEFGDFTSAAKAFFLYF---------SRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILT 298 (1076)
Q Consensus 228 ~~~~~ll~~y~~~g~~~~A~~~f~~~~---------~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~ 298 (1076)
+..|.+++-.+..+.+.-..++.+.+. ..+-.+|+.++.+.++....-.-++.+|.-|.+.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 456677766666666666555555542 34556899999999776663256778899999888899999999
Q ss_pred HHHHHHhcc
Q 038364 299 IILKLCTKL 307 (1076)
Q Consensus 299 ~ll~a~~~~ 307 (1076)
.++++|.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 999998765
No 399
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=30.45 E-value=4.3e+02 Score=28.99 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=55.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHH--
Q 038364 776 IMGFAIYGNGKEAILLFHELLE--TGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLG-- 851 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~--~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~-- 851 (1076)
|.+++..+++.+++...-+--+ +.+.|...-...++ |++.+....+.++-.......+ .-+..-|..++++|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 6677777777777654433322 12455544444444 7888888888777776665422 222334888777765
Q ss_pred ---hcCCHHHHHHHHHhC
Q 038364 852 ---KAGYLDEAWDFIRTM 866 (1076)
Q Consensus 852 ---r~G~l~eA~~l~~~m 866 (1076)
-.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 469999999998554
No 400
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.19 E-value=7.9e+02 Score=27.22 Aligned_cols=214 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhc-CCCCchHHHHHH
Q 038364 597 NIVAWNSLISGYCFKG-LFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNS-GIYPNVVTWTSL 674 (1076)
Q Consensus 597 d~~~~n~lI~~~~~~g-~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~-gi~pd~~ty~~L 674 (1076)
|...|..++..+.... ...+-..++..+- ++++.|..+ ...+|+-+... .-+++...|..+
T Consensus 17 d~~~~~~l~~~L~~~~l~~~~R~~ll~D~~----------------al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~ 79 (324)
T PF11838_consen 17 DEENWDALIKQLQSNHLSPLDRAQLLDDLF----------------ALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTA 79 (324)
T ss_dssp CTTHHHHHHHHHHHHGS-HHHHHHHHHHHH----------------HHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHH----------------HHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHH
Q ss_pred HHHHhcCC-Chh---HHHHH-HHH---------HhhcCCCCC--hhhHHHHHHHH-hcCCC-----chhHHHHHHHHHHc
Q 038364 675 ISGSLQNE-NYR---ESLKF-FIQ---------MQQEDIKPN--STTMSSLLQTC-GGLGL-----LQNGKEIHCLCLKN 732 (1076)
Q Consensus 675 I~~~~~~g-~~~---eAl~l-~~~---------m~~~gi~pd--~~t~~~lL~a~-~~~g~-----~~~a~~i~~~~~~~ 732 (1076)
+..+.... .+. +...- |+. +.+.|..++ .......+... ....- .+.+.+.+......
T Consensus 80 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~ 159 (324)
T PF11838_consen 80 LSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDG 159 (324)
T ss_dssp HHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Q ss_pred CC----CCChhhHHHHHHHHhhcCCHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHH
Q 038364 733 GF----IKDAYVATGLIDMYSKSGNLKSAREVFRKSA-NKTLASWNCMIMGFAIYGNGKEAILLFHELLETG-FQPDAIT 806 (1076)
Q Consensus 733 g~----~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g-~~Pd~~t 806 (1076)
+. ..++.....+.....+.|..++-..+++... .++..-...++.+.+...+.+...++++.....+ +++..
T Consensus 160 ~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d-- 237 (324)
T PF11838_consen 160 NDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD-- 237 (324)
T ss_dssp TT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT--
T ss_pred CcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH--
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHH
Q 038364 807 FTALLAACKNSGLV--EEGWKYFDS 829 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~--~eA~~~~~~ 829 (1076)
...++.++...+.. +.+++++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 238 IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHH
No 401
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=29.79 E-value=1.4e+03 Score=29.94 Aligned_cols=26 Identities=4% Similarity=-0.083 Sum_probs=13.5
Q ss_pred HHHhhcCCCCHhHHHHHHHHHHhcCC
Q 038364 588 EVFDNMKNRNIVAWNSLISGYCFKGL 613 (1076)
Q Consensus 588 ~lf~~m~~~d~~~~n~lI~~~~~~g~ 613 (1076)
.+...+.++|...--.-+..+.+.+.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~ 650 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP 650 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc
Confidence 33444445555555555555555554
No 402
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.65 E-value=68 Score=21.42 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=20.2
Q ss_pred CCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 886 GHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 886 g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677788888888777776666655544
No 403
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.49 E-value=78 Score=33.36 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=41.8
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 849 LLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
++.+.|+.+.|.+++.+. .. +.+...|--+...-.+.|+++.|.+.+++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345667777777777775 23 3355678777777788888888888888888888875
No 404
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.45 E-value=8.2e+02 Score=27.49 Aligned_cols=92 Identities=17% Similarity=0.173 Sum_probs=63.1
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhcCCC--------ChHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----
Q 038364 739 YVATGLIDMYSKSGNLKSAREVFRKSANK--------TLASWN-CMIMGFAIYGNGKEAILLFHELLETGFQPDAI---- 805 (1076)
Q Consensus 739 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d~~s~n-~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~---- 805 (1076)
...-.....|++-|+.+.|.+.+++.-++ |++-+. .|.-.|..+.-..+-++..+.|.++|-..+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34455778899999999999998876554 333332 23445566666778888888888888877764
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
+|-.+- |....++.+|-.+|-....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 343332 4556788888888876654
No 405
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=29.42 E-value=1.3e+02 Score=27.56 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=49.7
Q ss_pred hhhhhhccHHHHHHHHhccCCCCCcEEEEeccccCchhHHHHHHHHhhcCceEEEecCC
Q 038364 1001 GKVLLSHTEKLAIVYGLMKTKSRAPIRVIKNTRVCSDCHTAAKYMSLVRGREIFLRDGA 1059 (1076)
Q Consensus 1001 ~~~~~~hse~la~a~gl~~~~~~~~i~v~knlr~c~dch~~~k~~s~~~~r~i~vrd~~ 1059 (1076)
+..|..|.|.-++--=-.+..+|..+.|---.+-|..|--+|.-.|.-.|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 44578899998877544455559999999999999999999999999999999998854
No 406
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.15 E-value=1.2e+03 Score=29.14 Aligned_cols=550 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHhCCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHcc---------CCcH-------HHHHHHHHHHHhCCCCCH
Q 038364 369 MVKLRNEKWENAIKLFREMQ-FSSAKAISRTIVKMLQACAKV---------GAFH-------EGKQIHGYVLKSALESNL 431 (1076)
Q Consensus 369 ~~~~~~g~~~eAl~lf~~M~-~~g~~p~~~t~~~ll~a~~~~---------g~~~-------~a~~i~~~~~~~g~~~d~ 431 (1076)
..|..-|.+++|+++--... .-.+.++...+.+++.-|... +..+ .-+.+.+.|+...+..+.
T Consensus 67 KVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e 146 (929)
T KOG2062|consen 67 KVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDDNE 146 (929)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhhhH
Q ss_pred --HHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 038364 432 --SVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFT 509 (1076)
Q Consensus 432 --~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~ 509 (1076)
.+....+..+ +.+-+++|.--.+....--....+.+++.--..+.-.+.++..-........|| |-.+..+|.-
T Consensus 147 ~~~aiGia~E~~-rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~c~v~ 222 (929)
T KOG2062|consen 147 YKQAIGIAFETR-RLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQCYVF 222 (929)
T ss_pred HHHHHhHHhhhh-hHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeeeeeEE
Q ss_pred cCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 038364 510 HGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589 (1076)
Q Consensus 510 ~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~l 589 (1076)
..+.+.|.++++++.+. -|.-.-..+.--......-+.-..+...+... -..|......++..++-.-..+--.+.
T Consensus 223 Ldd~~~va~ll~kL~~e---~~~llayQIAFDL~esasQefL~~v~~~l~~d-~~~de~p~~kii~ILSGe~tik~~l~F 298 (929)
T KOG2062|consen 223 LDDAEAVADLLEKLVKE---DDLLLAYQIAFDLYESASQEFLDSVLDRLPAD-DARDEKPMEKIISILSGEETIKLYLQF 298 (929)
T ss_pred cCCHHHHHHHHHHHHhc---chhhhHHHHHHHHhhccCHHHHHHHHHHcccc-cccccChHHHHHHHhcCchHHHHHHHH
Q ss_pred HhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccch----------------hhhhhhhhhcCChhHHH
Q 038364 590 FDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW----------------NSLVSGYSIWGQSKEAL 653 (1076)
Q Consensus 590 f~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~----------------~~Li~~y~k~g~~~~A~ 653 (1076)
|-+-..-|....+..-... ++.-...|.-+-+.....|-..|..-- .+---+-.+.|+..+|.
T Consensus 299 L~~~N~tD~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~WlskAtNWaKFtAtAsLGvIH~G~~~~~~ 377 (929)
T KOG2062|consen 299 LLRHNNTDLLILEEIKESV-RNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSKATNWAKFTATASLGVIHRGHENQAM 377 (929)
T ss_pred HHHcCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhhcchHhhhhhhhhcceeeccccchHH
Q ss_pred HHHHHhHhcC---CCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHH
Q 038364 654 VIIHHMKNSG---IYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCL 730 (1076)
Q Consensus 654 ~lf~~m~~~g---i~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~ 730 (1076)
+++.-..-.. -.+-..-=..+.-|+..+|..+++.+++.+..+..- +...-....-+..-.|.=..-+++++.+.
T Consensus 378 ~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~--~e~v~hG~cLGlGLa~mGSa~~eiYe~lK 455 (929)
T KOG2062|consen 378 KLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAE--NEVVRHGACLGLGLAGMGSANEEIYEKLK 455 (929)
T ss_pred HHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhcc--chhhhhhhhhhccchhcccccHHHHHHHH
Q ss_pred HcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 038364 731 KNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWN-------CMIMGFAIYGNGKEAILLFHELLETGFQPD 803 (1076)
Q Consensus 731 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n-------~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd 803 (1076)
+.-...+..+..+-.-+.+-++-=..-.+.+++|..-...|-. .+.-++..-|+-++|-.+.++|.... .|-
T Consensus 456 evLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk-dpi 534 (929)
T KOG2062|consen 456 EVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDK-DPI 534 (929)
T ss_pred HHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC-chh
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHH--HHHH
Q 038364 804 AI--TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM--PFKPDAT--IWGA 877 (1076)
Q Consensus 804 ~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~--~~~~ 877 (1076)
.. -..++..||+-.|+....++++.-... ....|+.-+..+.-++.-..+.+.-..+++-+ ...|-+. +-.+
T Consensus 535 lR~~Gm~t~alAy~GTgnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~A 612 (929)
T KOG2062|consen 535 LRYGGMYTLALAYVGTGNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMA 612 (929)
T ss_pred hhhhhHHHHHHHHhccCchhhHHHhhccccc--ccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHH
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHHHHHHcCC--hHHHHHHHHHHHh
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMNLLAMSNR--WEDVERLRHSMDE 934 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~y~~~G~--~~eA~~~~~~m~~ 934 (1076)
|.-+|.-.|+.+ |..+++-+.. +|.+ .++...++.+..++.. -.....+++...+
T Consensus 613 LGIaCAGtG~~e-Ai~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~k 672 (929)
T KOG2062|consen 613 LGIACAGTGLKE-AINLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEK 672 (929)
T ss_pred HhhhhcCCCcHH-HHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHH
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.06 E-value=8.1e+02 Score=26.95 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH----HHcCCCCCccchhhhh-hhhhhcCChhHHHHHHHHhHh----cCCCCchHHHH
Q 038364 602 NSLISGYCFKGLFVNAKKMLNQM----EEEEIKPDLVSWNSLV-SGYSIWGQSKEALVIIHHMKN----SGIYPNVVTWT 672 (1076)
Q Consensus 602 n~lI~~~~~~g~~~~A~~lf~~M----~~~g~~pd~~t~~~Li-~~y~k~g~~~~A~~lf~~m~~----~gi~pd~~ty~ 672 (1076)
.-+|..+.+.|.+.+|+.+...+ .+..-+|+.++.-.+= ..|-.-.++.++..-+..... .-++|....--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 35788888999999998776554 4444456655543221 223333333333333322221 12333333333
Q ss_pred HHHHH--HhcCCChhHHHHHHHHHhh
Q 038364 673 SLISG--SLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 673 ~LI~~--~~~~g~~~eAl~l~~~m~~ 696 (1076)
-+++| .|...++.-|...|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 34444 2445567778887777665
No 408
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=28.18 E-value=1.7e+02 Score=28.64 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=45.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 856 LDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 856 l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
-+.|.++++-|+- ..............|++..|..+.+.++..+|+|..+-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4567777777752 22333444556778999999999999999999999888888888876654
No 409
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.13 E-value=2.1e+02 Score=34.70 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCCccchhhhhhhhhhcCChhH------HHHHHHHhHhcCCCCchHHHHHH
Q 038364 603 SLISGYCFKGLFVNAKKMLNQMEEEE--IKPDLVSWNSLVSGYSIWGQSKE------ALVIIHHMKNSGIYPNVVTWTSL 674 (1076)
Q Consensus 603 ~lI~~~~~~g~~~~A~~lf~~M~~~g--~~pd~~t~~~Li~~y~k~g~~~~------A~~lf~~m~~~gi~pd~~ty~~L 674 (1076)
++..+|..+|++..+.++++...... -+.=...+|.-|+.+.+.|.++- |.++++. ..+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 67777777777777777777776542 11112234444555555665431 2222222 2244456666666
Q ss_pred HHHH
Q 038364 675 ISGS 678 (1076)
Q Consensus 675 I~~~ 678 (1076)
+.+-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 5543
No 410
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=28.06 E-value=87 Score=22.66 Aligned_cols=30 Identities=17% Similarity=-0.034 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCchHHHHH--HHHHhcCCCC
Q 038364 875 WGALLGSCRIHGHLEYAEIA--SRRLFKLEPC 904 (1076)
Q Consensus 875 ~~~Ll~a~~~~g~~e~A~~~--~~~l~~l~P~ 904 (1076)
|-++...+-..|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 45555666677777777777 3366555554
No 411
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.38 E-value=88 Score=34.23 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=36.8
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHH
Q 038364 850 LGKAGYLDEAWDFIRTM-PFKPDA-TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNL 911 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m-~~~pd~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~ 911 (1076)
..+.|+.++|..+|+.. ...|+. .+..-+..-...+++.-+|-.++-+++.+.|.|.++.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34677777777777653 334432 233344444455566777777777777777776555443
No 412
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.07 E-value=3.5e+02 Score=24.08 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 038364 750 KSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAIL 790 (1076)
Q Consensus 750 k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~ 790 (1076)
+.|+.+.|+++.+.+. +.+-.+..++.++...|..+-|.+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 5688888888888888 888888888888888887665543
No 413
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.81 E-value=7.7e+02 Score=25.65 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=41.0
Q ss_pred HhcCCCchhHHHHHHHHHHcCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHH--HHHHHHHHHcCCHHHH
Q 038364 713 CGGLGLLQNGKEIHCLCLKNGFIKD--AYVATGLIDMYSKSGNLKSAREVFRKSANKTLASW--NCMIMGFAIYGNGKEA 788 (1076)
Q Consensus 713 ~~~~g~~~~a~~i~~~~~~~g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~--n~li~~~~~~g~~~~A 788 (1076)
....++++.|...+...+..--+.+ ...---|.......|..|+|...++...+++-.+- ..-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 3445555555555554443211110 11112244455555666666666655554432221 1123455556666666
Q ss_pred HHHHHHHHHCC
Q 038364 789 ILLFHELLETG 799 (1076)
Q Consensus 789 l~l~~~M~~~g 799 (1076)
..-|++.++.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 66666665543
No 414
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.81 E-value=3.2e+02 Score=26.52 Aligned_cols=66 Identities=11% Similarity=-0.009 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 801 QPDAITFTALLAACKNSGL---VEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 801 ~Pd~~t~~~ll~a~~~~g~---~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
.+...+--.+..++.++.+ +.++..+++.+.++-.-.-+.+...-|.-++.|.|.++++.++++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 4444444445555555443 44556666665531011111222223344556666666666665553
No 415
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=25.80 E-value=6.3e+02 Score=30.00 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCccc
Q 038364 476 GYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSS 534 (1076)
Q Consensus 476 g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t 534 (1076)
.++++|++..++..+.+-. ..-|-...|.++|.++.++|+.||..|
T Consensus 208 ~~ldeal~~~~~a~~~~~~-------------~SIg~~GNaadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 208 DSLDEALARAEEAKAEGKP-------------ISIGLLGNAAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred CCHHHHHHHHHHHHHcCCc-------------eEEEeeccHHHHHHHHHHcCCCCCCcC
Confidence 4677777777777666543 122445566777777777777776543
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.73 E-value=2.6e+02 Score=25.96 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 600 AWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 600 ~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
-|..++.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888888876
No 417
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=25.61 E-value=5.9e+02 Score=24.24 Aligned_cols=22 Identities=14% Similarity=-0.135 Sum_probs=15.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHH
Q 038364 911 LMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 911 ~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
.-+-.+...|+.+||.+-+++.
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 4455677788888888887764
No 418
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=25.37 E-value=3.9e+02 Score=29.33 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=38.2
Q ss_pred HHHHhcCCChhHHHHHHHHHhhc--CCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh--
Q 038364 675 ISGSLQNENYRESLKFFIQMQQE--DIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK-- 750 (1076)
Q Consensus 675 I~~~~~~g~~~eAl~l~~~m~~~--gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k-- 750 (1076)
|.+++..+++.+++...-+--+. .++|.. .-.-|--|++.+......++-+.-++.--..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 45666666666666554443321 233322 222222344555555555554444433222222334444444432
Q ss_pred ---cCCHHHHHHHH
Q 038364 751 ---SGNLKSAREVF 761 (1076)
Q Consensus 751 ---~G~~~~A~~vf 761 (1076)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 45555555544
No 419
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=25.31 E-value=8.4e+02 Score=28.02 Aligned_cols=64 Identities=19% Similarity=0.170 Sum_probs=48.8
Q ss_pred CHHHHHHH---HHHHHHcCCchHHHHHHHHHhcCCCC-CchhHHHHHHHHH-HcCChHHHHHHHHHHHh
Q 038364 871 DATIWGAL---LGSCRIHGHLEYAEIASRRLFKLEPC-NSANYNLMMNLLA-MSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 871 d~~~~~~L---l~a~~~~g~~e~A~~~~~~l~~l~P~-~~~~y~~L~~~y~-~~G~~~eA~~~~~~m~~ 934 (1076)
|...|.++ +....+.|-+.-|.+..+-++.++|. ||-.-..+++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455555 45677889999999999999999999 8777777788775 55777777777776544
No 420
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=24.67 E-value=1.2e+02 Score=26.37 Aligned_cols=45 Identities=4% Similarity=-0.014 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHH
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWD 861 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~ 861 (1076)
....++|+..|....++..-.|+ -.+..+++.+|+..|++.++++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443221121 1233444444444554444443
No 421
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.49 E-value=1.6e+02 Score=26.39 Aligned_cols=51 Identities=14% Similarity=0.016 Sum_probs=32.8
Q ss_pred HHcCCchHHHHHHHHHhcCCCCC---------chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 883 RIHGHLEYAEIASRRLFKLEPCN---------SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 883 ~~~g~~e~A~~~~~~l~~l~P~~---------~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
.+.||+..|.+.+.+.++..... ..+...++.+....|++++|.+.+++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35567777766666665432111 1223457778888899999988888764
No 422
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.24 E-value=1.2e+03 Score=27.19 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCC-----CC-hhHHHHHHHHHHhCCChHHHHHHHHHHHhC---------CCCCCh
Q 038364 433 VCNCLISMYSRNNKLELATRVFDSMKD-----HN-LSSWNSMISSYTGLGYVDVAWSLFNKMNSS---------RIQPDI 497 (1076)
Q Consensus 433 v~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d-~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~---------g~~pd~ 497 (1076)
.+.-+-+-|..||+++.|.+.+.+..+ +. +-.|-.+|..-.-.|++......-.+..+. .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 356677889999999999999988532 12 235666777667777777666666555443 122223
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcC------CCCCcccHHHHHHHHHhcCchHHHHHHHHHH-HHcCCCCchhHH
Q 038364 498 ITWNCLLSGHFTHGSYQNVLTLLRGMQSLG------FRPNGSSVSVVLQAVTELRLLKYGRESHGYI-LRNGLDYDLYVG 570 (1076)
Q Consensus 498 ~ty~~Li~~~~~~g~~~~Al~l~~~m~~~g------i~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~-~~~g~~~d~~v~ 570 (1076)
..+..+.... .++++.|.+.|-.....- +.|..++....+.|.+-.+.-+.-..+.... -+.=++.++.+.
T Consensus 232 ~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence 3333333333 336666666654443211 2354445555555554433322221211110 011123344455
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCC
Q 038364 571 TSLMDMYVKNDCLQNAQEVFDNMKN 595 (1076)
Q Consensus 571 ~aLi~~y~k~g~~~~A~~lf~~m~~ 595 (1076)
..|-..|. +++....++++++..
T Consensus 310 ~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 310 EILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHhh--hhHHHHHHHHHHhcc
Confidence 55555443 467777777777764
No 423
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=23.98 E-value=1.3e+03 Score=27.62 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=48.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHhc
Q 038364 380 AIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSA-LESNLSVCNCLISMYSRNNKLELATRVFDSM 457 (1076)
Q Consensus 380 Al~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g-~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m 457 (1076)
...+|+..... +..|..-|..-+.-|-+.+...+...++..+++.. -.||..++.+.= -|-...+++.|+.+|.+-
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHH
Confidence 34445443322 34488888888888888777888888888887654 456666665543 233334477788777654
No 424
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=23.87 E-value=1.7e+03 Score=29.07 Aligned_cols=239 Identities=9% Similarity=-0.017 Sum_probs=113.0
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC
Q 038364 350 KLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALES 429 (1076)
Q Consensus 350 ~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~ 429 (1076)
.+...+.. +|...--.-+..+.+.+. ++++..+...... +|...=...+.++...+........+..+++ .+
T Consensus 625 ~L~~~L~D-~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 625 ELAPYLAD-PDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 44455555 677666667777777765 4455555555533 3333333444555444321111122223333 26
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 038364 430 NLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFT 509 (1076)
Q Consensus 430 d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~ 509 (1076)
|..+-.+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +...... +|...=.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~D---~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAATD---ENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhcC---CCHHHHHHHHHHHHH
Confidence 777777777777655422 23345566777887766777777777655432 1222221 244444444455555
Q ss_pred cCChhh-HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 038364 510 HGSYQN-VLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQE 588 (1076)
Q Consensus 510 ~g~~~~-Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~ 588 (1076)
.+..+. +...+..+... +|...=...+.++...+...........+++ .+|..+-...+.++.+.+.-+....
T Consensus 769 ~~~~~~~~~~~L~~ll~D---~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~~a~~~ 842 (897)
T PRK13800 769 LGAGGAPAGDAVRALTGD---PDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAADVAVPA 842 (897)
T ss_pred hccccchhHHHHHHHhcC---CCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccccchHHH
Confidence 544332 23444444332 4444444445555555443322222222221 1234444444555555444333333
Q ss_pred HHhhcCCCCHhHHHHHHHHHHh
Q 038364 589 VFDNMKNRNIVAWNSLISGYCF 610 (1076)
Q Consensus 589 lf~~m~~~d~~~~n~lI~~~~~ 610 (1076)
+...+.++|...--..+.++.+
T Consensus 843 L~~~L~D~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 843 LVEALTDPHLDVRKAAVLALTR 864 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhc
Confidence 3333334444444444444444
No 425
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.80 E-value=1.5e+02 Score=22.57 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=13.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC
Q 038364 368 IMVKLRNEKWENAIKLFREMQFS 390 (1076)
Q Consensus 368 i~~~~~~g~~~eAl~lf~~M~~~ 390 (1076)
..+|...|+.+.|.+++++....
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHc
Confidence 44555666666666666655543
No 426
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=23.76 E-value=1.2e+02 Score=33.45 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=37.3
Q ss_pred CChhh-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038364 359 EDDLL-WNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQ 404 (1076)
Q Consensus 359 ~d~~s-~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~ 404 (1076)
+|..+ ||..|..-++.|+.++|+.|++|..+.|+.--..||...++
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 35444 67999999999999999999999999998777777765554
No 427
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.46 E-value=1e+03 Score=26.22 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCCHHH
Q 038364 779 FAIYGNGKEAILLFHELLETGFQPDAITF-------TALLAACKNSGLVEE 822 (1076)
Q Consensus 779 ~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~-------~~ll~a~~~~g~~~e 822 (1076)
..+.+++++|+..+.+....|+..|..|. ..+...|...|+...
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 44566777888888888877777666543 333344555555443
No 428
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=23.25 E-value=3.2e+02 Score=25.33 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC
Q 038364 570 GTSLMDMYVKNDCLQNAQEVFDNMKN 595 (1076)
Q Consensus 570 ~~aLi~~y~k~g~~~~A~~lf~~m~~ 595 (1076)
|..|+..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78899999999999999999987765
No 429
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=23.10 E-value=5.2e+02 Score=28.84 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=60.7
Q ss_pred ChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCccc
Q 038364 768 TLASW--NCMIMGFAIYGNGKEAILLFHELLETGFQPDAI---TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEH 842 (1076)
Q Consensus 768 d~~s~--n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~---t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~ 842 (1076)
++.+| ..+..+-.+.|+..+|.+.|+++.+. .|-.. ....|+.+|.....+.+...++.+.-+- . .|...
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi-s-lPkSA- 346 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI-S-LPKSA- 346 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c-CcchH-
Confidence 33444 34566667789999999998887663 33221 2334666666655555555554433211 1 12211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
--|.-.++.+ +..+-++ +.||..+-..|-.+- -.|.++..++.+.+|.-+.+
T Consensus 347 ~icYTaALLK------~RAVa~k--Fspd~asrRGLS~AE------~~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 347 AICYTAALLK------TRAVSEK--FSPETASRRGLSTAE------INAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHH------HHHHHhh--cCchhhhhccccHHH------HHHHHHHHHHhhcCCCCcHH
Confidence 1122222222 2222222 245555443333221 23566777777878765443
No 430
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=23.05 E-value=71 Score=30.74 Aligned_cols=34 Identities=35% Similarity=0.670 Sum_probs=25.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 779 FAIYGNGKEAILLFHELLETGFQPDAITFTALLAAC 814 (1076)
Q Consensus 779 ~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~ 814 (1076)
....|.-.+|..+|++|++.|-.||. |+.|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 44556667899999999999999986 55666543
No 431
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.94 E-value=7e+02 Score=30.11 Aligned_cols=57 Identities=18% Similarity=0.108 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCC--Ch---hHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 038364 435 NCLISMYSRNNKLELATRVFDSMKDH--NL---SSWNSMISSYTGLGYVDVAWSLFNKMNSS 491 (1076)
Q Consensus 435 n~Li~~y~k~g~~~~A~~lf~~m~~~--d~---~s~n~lI~~~~~~g~~~~A~~lf~~M~~~ 491 (1076)
..|+.-|.+++++++|..++..|.-. .. .+.+.+.+.+.+..--++....++.+.-.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 35677899999999999999998532 22 24455566666665555555566655543
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.88 E-value=1.5e+02 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
--..++.++...|++++|.++.+.+..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455555555666666555555543
No 433
>PHA02878 ankyrin repeat protein; Provisional
Probab=22.68 E-value=1.3e+03 Score=27.30 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=9.1
Q ss_pred HHHhCCChHHHHHHHHhc
Q 038364 440 MYSRNNKLELATRVFDSM 457 (1076)
Q Consensus 440 ~y~k~g~~~~A~~lf~~m 457 (1076)
.-+..|..+.+..+++..
T Consensus 76 ~A~~~g~~~~v~~Ll~~~ 93 (477)
T PHA02878 76 IICKEPNKLGMKEMIRSI 93 (477)
T ss_pred HHHHCccHhHHHHHHHHH
Confidence 334455555555555544
No 434
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=22.57 E-value=2.7e+02 Score=26.60 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=33.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 865 TMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 865 ~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.+.+-|++.+..+-|.||++-+|+..|.+++|-+...-+.
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 3457799999999999999999999999999988754443
No 435
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.31 E-value=1.7e+02 Score=24.11 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=26.5
Q ss_pred hhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 038364 649 SKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQ 696 (1076)
Q Consensus 649 ~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~ 696 (1076)
+++..++++.+... .-|-.---.+|.||.+.|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444444321 12333444567888888888888888777753
No 436
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=21.93 E-value=1.1e+02 Score=35.65 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=29.9
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 863 IRTMPFKPDAT--IWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 863 ~~~m~~~pd~~--~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
|....+.|... ++++-++.+.+++|+..|-.++++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 33334555433 67777888899999999999999999999864
No 437
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=21.67 E-value=2e+02 Score=29.64 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 869 KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
.|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 438
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.16 E-value=2.7e+02 Score=21.57 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=20.1
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038364 372 LRNEKWENAIKLFREMQFSSAKAISRTIVKMLQ 404 (1076)
Q Consensus 372 ~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~ 404 (1076)
.+.|...++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666666666666666665555544
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=20.94 E-value=99 Score=29.78 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=13.3
Q ss_pred CChhHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 038364 682 ENYRESLKFFIQMQQEDIKPNSTTMSSLLQT 712 (1076)
Q Consensus 682 g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a 712 (1076)
|.-.+|..+|++|++.|-+||. |..|+.+
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3334444555555555555542 4444433
No 440
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.74 E-value=1.9e+02 Score=22.04 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=11.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 038364 776 IMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555554
No 441
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=20.69 E-value=5.3e+02 Score=27.37 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQP---DAITF--TALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCM 846 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~P---d~~t~--~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~l 846 (1076)
.|.||--|.-+..+.+|-+.|.. +.|+.| |..++ ..-+......|++++|.+...++..+ -+.-|.+.+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 44555555555555555554433 223444 22222 22344456667777777766655332 222232222222
Q ss_pred HH----HHHhcCCHHHHHHHHHh
Q 038364 847 VD----LLGKAGYLDEAWDFIRT 865 (1076)
Q Consensus 847 i~----~l~r~G~l~eA~~l~~~ 865 (1076)
.. -+.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 24577888888888766
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.50 E-value=6.8e+02 Score=28.98 Aligned_cols=52 Identities=10% Similarity=0.041 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcc--cHHHHHHHHH--hcCCHHHHHHHHHhCC
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIE--HYSCMVDLLG--KAGYLDEAWDFIRTMP 867 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~--~y~~li~~l~--r~G~l~eA~~l~~~m~ 867 (1076)
....+++..|.++|+.+..+ +.++.. .|..+..+|. ..-++++|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44678999999999999875 555544 4555556554 4567889999988763
No 443
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=20.33 E-value=1.6e+03 Score=27.43 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=18.6
Q ss_pred cCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 038364 409 VGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLE 448 (1076)
Q Consensus 409 ~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~ 448 (1076)
.|++..+.+..... ..|..+...+.+.+.++|-++
T Consensus 310 ~~d~~~vL~~~~~~-----~~~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 310 EGDIESVLKEISSL-----FDDWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred ccCHHHHHHHHHHH-----ccchhHHHHHHHHHHhcCccc
Confidence 56666665554433 124455667777777777666
Done!