Query 038364
Match_columns 1076
No_of_seqs 1027 out of 5666
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 17:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-39 6.4E-44 398.5 40.6 518 338-917 62-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.2E-40 1.4E-44 404.2 34.5 492 235-805 61-584 (597)
3 4g26_A Pentatricopeptide repea 99.9 7.1E-26 2.4E-30 269.7 22.0 184 361-544 26-222 (501)
4 4g26_A Pentatricopeptide repea 99.9 4.1E-26 1.4E-30 271.8 19.6 205 481-716 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.5E-22 8.4E-27 232.3 42.1 338 573-921 39-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-21 4.2E-26 226.4 40.4 351 573-934 5-367 (388)
7 2gw1_A Mitochondrial precursor 99.9 5.5E-20 1.9E-24 220.0 33.2 433 462-936 6-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 3.5E-20 1.2E-24 218.2 29.1 318 566-915 25-372 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.6E-19 1.6E-23 212.1 39.2 445 434-912 9-489 (514)
10 3fp2_A TPR repeat-containing p 99.8 5.1E-19 1.7E-23 213.2 34.2 426 463-936 26-492 (537)
11 1xi4_A Clathrin heavy chain; a 99.8 3.7E-15 1.2E-19 186.7 62.6 285 604-931 1055-1341(1630)
12 3fp2_A TPR repeat-containing p 99.8 8.3E-18 2.8E-22 202.6 37.5 438 432-910 26-500 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 4.2E-15 1.4E-19 186.1 61.0 641 229-928 609-1377(1630)
14 2y4t_A DNAJ homolog subfamily 99.8 7E-18 2.4E-22 198.5 34.6 330 531-905 25-414 (450)
15 3ieg_A DNAJ homolog subfamily 99.7 9.1E-16 3.1E-20 173.5 32.7 310 599-918 4-352 (359)
16 1b89_A Protein (clathrin heavy 99.7 1.3E-16 4.3E-21 181.8 22.5 380 340-768 14-418 (449)
17 3ieg_A DNAJ homolog subfamily 99.7 4.2E-15 1.5E-19 168.0 33.4 294 633-935 3-335 (359)
18 1b89_A Protein (clathrin heavy 99.7 1.1E-15 3.7E-20 174.1 27.9 292 238-592 14-307 (449)
19 3hym_B Cell division cycle pro 99.7 7.8E-15 2.7E-19 164.0 30.2 286 597-921 21-320 (330)
20 2ooe_A Cleavage stimulation fa 99.7 1E-13 3.5E-18 167.3 40.1 209 721-935 256-492 (530)
21 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.7E-22 202.0 6.6 115 599-713 128-246 (1134)
22 3hym_B Cell division cycle pro 99.7 1.3E-14 4.4E-19 162.2 27.3 264 665-934 19-298 (330)
23 3spa_A Mtrpol, DNA-directed RN 99.7 5.7E-17 1.9E-21 197.4 7.7 150 427-581 123-286 (1134)
24 2xm6_A Protein corresponding t 99.7 3.5E-13 1.2E-17 160.9 39.9 352 546-919 57-453 (490)
25 2ooe_A Cleavage stimulation fa 99.6 3.3E-13 1.1E-17 162.8 37.7 411 430-904 12-495 (530)
26 1fch_A Peroxisomal targeting s 99.6 5.2E-15 1.8E-19 168.7 20.5 300 607-931 34-355 (368)
27 2xm6_A Protein corresponding t 99.6 1.1E-12 3.7E-17 156.7 40.8 350 566-936 38-433 (490)
28 3mkr_A Coatomer subunit epsilo 99.6 2E-13 6.8E-18 151.2 25.2 270 642-927 8-286 (291)
29 1fch_A Peroxisomal targeting s 99.6 1.4E-13 4.7E-18 156.8 24.6 278 475-828 38-354 (368)
30 4eqf_A PEX5-related protein; a 99.6 6.8E-14 2.3E-18 159.6 21.2 258 633-931 65-352 (365)
31 4g1t_A Interferon-induced prot 99.6 6.8E-13 2.3E-17 156.9 30.5 361 567-946 51-470 (472)
32 4eqf_A PEX5-related protein; a 99.6 4.8E-14 1.6E-18 160.9 19.6 231 703-936 65-311 (365)
33 3cv0_A Peroxisome targeting si 99.5 1.4E-13 4.8E-18 153.5 20.1 276 633-932 21-312 (327)
34 3mkr_A Coatomer subunit epsilo 99.5 2.9E-13 9.8E-18 149.9 21.7 246 676-936 7-265 (291)
35 3cv0_A Peroxisome targeting si 99.5 1.4E-12 4.7E-17 145.4 24.1 255 435-694 25-312 (327)
36 4g1t_A Interferon-induced prot 99.4 2.5E-11 8.5E-16 143.5 30.4 388 493-913 47-471 (472)
37 3uq3_A Heat shock protein STI1 99.4 3.7E-12 1.3E-16 136.5 20.6 219 668-935 5-236 (258)
38 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.9E-11 6.6E-16 132.6 22.6 244 642-929 14-269 (275)
39 3uq3_A Heat shock protein STI1 99.4 6.8E-12 2.3E-16 134.5 18.2 240 633-914 5-255 (258)
40 2pl2_A Hypothetical conserved 99.4 8.4E-12 2.9E-16 131.6 17.6 192 736-932 3-211 (217)
41 3u4t_A TPR repeat-containing p 99.3 2.3E-11 7.9E-16 132.0 19.2 247 636-920 6-269 (272)
42 2ho1_A Type 4 fimbrial biogene 99.3 1.3E-10 4.3E-15 124.6 23.0 197 738-936 37-239 (252)
43 2vq2_A PILW, putative fimbrial 99.3 2E-10 6.7E-15 120.2 22.3 198 737-936 7-212 (225)
44 3e4b_A ALGK; tetratricopeptide 99.3 2.8E-10 9.5E-15 134.2 25.4 343 573-937 9-389 (452)
45 3e4b_A ALGK; tetratricopeptide 99.3 1.5E-10 5.2E-15 136.4 22.8 371 542-933 13-419 (452)
46 2q7f_A YRRB protein; TPR, prot 99.3 7.7E-11 2.6E-15 125.2 17.9 197 737-936 22-223 (243)
47 2ho1_A Type 4 fimbrial biogene 99.3 4.8E-10 1.7E-14 120.0 24.0 172 737-910 70-247 (252)
48 1ouv_A Conserved hypothetical 99.3 1E-09 3.5E-14 119.5 26.0 224 667-903 5-253 (273)
49 2q7f_A YRRB protein; TPR, prot 99.2 1.2E-10 4.1E-15 123.7 18.2 210 706-919 26-240 (243)
50 1ouv_A Conserved hypothetical 99.2 1.2E-09 4.2E-14 118.9 26.4 223 702-936 5-252 (273)
51 4e6h_A MRNA 3'-END-processing 99.2 2.6E-08 8.9E-13 121.9 40.3 432 416-906 52-575 (679)
52 2vq2_A PILW, putative fimbrial 99.2 7.4E-10 2.5E-14 115.7 22.3 207 667-912 7-222 (225)
53 1xnf_A Lipoprotein NLPI; TPR, 99.2 9.7E-10 3.3E-14 119.0 23.4 244 372-656 16-269 (275)
54 3sf4_A G-protein-signaling mod 99.2 1.4E-10 4.8E-15 133.4 17.1 269 635-934 11-335 (406)
55 4a1s_A PINS, partner of inscut 99.2 7.3E-11 2.5E-15 136.6 14.0 266 637-934 52-371 (411)
56 3sf4_A G-protein-signaling mod 99.2 6.3E-11 2.1E-15 136.3 13.1 295 596-923 7-364 (406)
57 3vtx_A MAMA; tetratricopeptide 99.2 5.6E-10 1.9E-14 113.6 18.7 165 768-936 4-171 (184)
58 4abn_A Tetratricopeptide repea 99.2 2E-10 6.7E-15 136.3 17.5 192 736-932 100-318 (474)
59 3ro2_A PINS homolog, G-protein 99.2 1.5E-10 5.1E-15 128.7 15.5 266 639-935 11-332 (338)
60 3u4t_A TPR repeat-containing p 99.2 4.3E-09 1.5E-13 113.9 26.7 231 467-703 8-254 (272)
61 2h6f_A Protein farnesyltransfe 99.2 4.3E-10 1.5E-14 129.0 18.3 244 668-919 97-366 (382)
62 2pl2_A Hypothetical conserved 99.1 1.2E-09 4.2E-14 114.9 19.3 191 667-865 4-210 (217)
63 2h6f_A Protein farnesyltransfe 99.1 1.4E-09 4.9E-14 124.6 21.0 223 704-934 98-347 (382)
64 4e6h_A MRNA 3'-END-processing 99.1 9.8E-08 3.3E-12 116.8 37.3 85 360-445 65-153 (679)
65 4a1s_A PINS, partner of inscut 99.1 5.3E-10 1.8E-14 129.3 15.5 270 602-904 52-375 (411)
66 3ro2_A PINS homolog, G-protein 99.1 1.1E-09 3.7E-14 121.7 16.8 274 601-904 8-335 (338)
67 3nf1_A KLC 1, kinesin light ch 99.1 3.6E-10 1.2E-14 124.7 10.9 237 667-934 26-306 (311)
68 2ond_A Cleavage stimulation fa 99.1 1.3E-08 4.6E-13 113.0 23.8 218 685-906 33-275 (308)
69 3ulq_A Response regulator aspa 99.0 5E-09 1.7E-13 120.3 20.5 230 674-934 109-367 (383)
70 3ulq_A Response regulator aspa 99.0 4.1E-09 1.4E-13 121.0 19.1 189 744-932 109-332 (383)
71 4gyw_A UDP-N-acetylglucosamine 99.0 2.1E-09 7.3E-14 133.0 17.8 161 769-934 9-173 (723)
72 3vtx_A MAMA; tetratricopeptide 99.0 5E-09 1.7E-13 106.4 17.7 166 737-906 4-175 (184)
73 2ond_A Cleavage stimulation fa 99.0 2E-08 7E-13 111.6 22.6 211 720-936 33-271 (308)
74 3as5_A MAMA; tetratricopeptide 99.0 6E-09 2.1E-13 104.8 16.6 158 775-935 14-173 (186)
75 3nf1_A KLC 1, kinesin light ch 99.0 9.9E-10 3.4E-14 121.1 11.6 243 633-904 27-310 (311)
76 1hz4_A MALT regulatory protein 98.9 1.5E-07 5.2E-12 107.2 27.0 224 711-934 61-321 (373)
77 4i17_A Hypothetical protein; T 98.9 2.3E-08 8E-13 105.4 18.3 203 702-916 6-224 (228)
78 4i17_A Hypothetical protein; T 98.9 3E-08 1E-12 104.5 18.0 188 737-936 6-210 (228)
79 3as5_A MAMA; tetratricopeptide 98.9 3E-08 1E-12 99.6 16.9 168 738-908 8-180 (186)
80 4abn_A Tetratricopeptide repea 98.8 5.3E-08 1.8E-12 115.4 19.2 208 649-866 84-318 (474)
81 3q15_A PSP28, response regulat 98.8 1.9E-07 6.5E-12 106.9 22.6 158 675-832 108-289 (378)
82 3q15_A PSP28, response regulat 98.8 9.6E-08 3.3E-12 109.3 19.3 223 711-934 109-364 (378)
83 3edt_B KLC 2, kinesin light ch 98.8 4.3E-08 1.5E-12 105.9 14.4 221 714-934 12-280 (283)
84 1hz4_A MALT regulatory protein 98.8 3.2E-07 1.1E-11 104.4 22.4 269 603-903 19-324 (373)
85 1qqe_A Vesicular transport pro 98.8 1.4E-07 4.9E-12 103.9 18.7 164 740-905 79-273 (292)
86 4gyw_A UDP-N-acetylglucosamine 98.7 1.1E-07 3.7E-12 117.7 15.5 162 737-903 8-176 (723)
87 3qky_A Outer membrane assembly 98.7 4.4E-07 1.5E-11 97.8 18.2 182 737-936 14-225 (261)
88 1qqe_A Vesicular transport pro 98.7 1.1E-07 3.8E-12 104.7 13.4 199 719-932 33-266 (292)
89 3edt_B KLC 2, kinesin light ch 98.6 5.4E-07 1.8E-11 97.1 17.5 223 645-901 13-281 (283)
90 2fo7_A Synthetic consensus TPR 98.6 2.9E-07 1E-11 86.6 13.5 93 843-935 38-132 (136)
91 3qky_A Outer membrane assembly 98.6 4.8E-07 1.7E-11 97.5 15.9 202 702-925 14-251 (261)
92 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.2E-06 4E-11 92.3 17.7 180 738-937 4-215 (225)
93 3mv2_B Coatomer subunit epsilo 98.6 4.9E-06 1.7E-10 90.9 22.4 78 855-934 193-281 (310)
94 2fo7_A Synthetic consensus TPR 98.6 8.7E-07 3E-11 83.3 14.6 131 771-904 3-135 (136)
95 4ga2_A E3 SUMO-protein ligase 98.6 1E-07 3.5E-12 93.7 8.2 135 782-921 10-149 (150)
96 3mv2_B Coatomer subunit epsilo 98.5 5.5E-06 1.9E-10 90.5 22.3 241 643-908 23-289 (310)
97 3qou_A Protein YBBN; thioredox 98.5 8E-07 2.8E-11 97.6 16.0 173 755-932 103-281 (287)
98 2pzi_A Probable serine/threoni 98.5 4.5E-07 1.5E-11 112.4 13.9 144 771-920 435-582 (681)
99 2uy1_A Cleavage stimulation fa 98.5 5.6E-05 1.9E-09 89.5 30.2 124 770-899 287-411 (493)
100 2uy1_A Cleavage stimulation fa 98.5 7.2E-05 2.4E-09 88.6 30.4 198 586-797 198-412 (493)
101 4ga2_A E3 SUMO-protein ligase 98.4 4.8E-07 1.6E-11 88.8 8.8 119 813-934 6-128 (150)
102 2vsy_A XCC0866; transferase, g 98.4 1.6E-06 5.4E-11 105.1 15.3 158 751-913 2-169 (568)
103 3rjv_A Putative SEL1 repeat pr 98.4 9.1E-06 3.1E-10 84.7 18.7 162 767-937 16-199 (212)
104 3gyz_A Chaperone protein IPGC; 98.4 1.1E-06 3.7E-11 86.5 10.8 102 835-936 30-134 (151)
105 2ifu_A Gamma-SNAP; membrane fu 98.4 3.1E-06 1.1E-10 93.7 15.1 154 771-927 78-253 (307)
106 2r5s_A Uncharacterized protein 98.4 2.2E-06 7.4E-11 86.3 12.1 156 741-933 9-171 (176)
107 2pzi_A Probable serine/threoni 98.3 8.9E-06 3E-10 100.7 19.7 193 714-913 402-614 (681)
108 2vgx_A Chaperone SYCD; alterna 98.3 1.5E-06 5.1E-11 85.1 9.8 97 840-936 21-119 (148)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.3 6.4E-06 2.2E-10 85.1 15.1 123 809-936 11-151 (213)
110 3urz_A Uncharacterized protein 98.3 5.1E-06 1.7E-10 86.2 14.2 154 746-905 12-190 (208)
111 2qfc_A PLCR protein; TPR, HTH, 98.3 1.7E-05 5.8E-10 87.0 19.1 163 771-933 77-264 (293)
112 4gco_A Protein STI-1; structur 98.3 2E-06 6.7E-11 81.6 9.8 95 841-935 14-110 (126)
113 2vsy_A XCC0866; transferase, g 98.3 5.2E-06 1.8E-10 100.5 15.9 144 717-866 3-154 (568)
114 3u3w_A Transcriptional activat 98.3 4E-05 1.4E-09 84.0 20.6 159 775-933 81-264 (293)
115 2yhc_A BAMD, UPF0169 lipoprote 98.3 8.1E-06 2.8E-10 85.8 14.3 185 703-908 4-220 (225)
116 2ifu_A Gamma-SNAP; membrane fu 98.2 1.9E-06 6.5E-11 95.5 9.0 171 751-933 29-222 (307)
117 4gco_A Protein STI-1; structur 98.2 5.7E-06 1.9E-10 78.4 10.9 114 800-916 8-125 (126)
118 2xcb_A PCRH, regulatory protei 98.2 8.8E-06 3E-10 78.6 12.0 96 840-935 18-115 (142)
119 2r5s_A Uncharacterized protein 98.2 1.3E-05 4.5E-10 80.5 13.5 154 705-864 8-168 (176)
120 2c2l_A CHIP, carboxy terminus 98.2 4.5E-06 1.5E-10 91.2 10.7 190 738-935 4-199 (281)
121 1na0_A Designed protein CTPR3; 98.2 1.5E-05 5.1E-10 73.7 12.8 113 806-920 11-125 (125)
122 1a17_A Serine/threonine protei 98.2 1.4E-05 4.9E-10 78.5 13.4 125 808-934 17-145 (166)
123 3qou_A Protein YBBN; thioredox 98.2 1.3E-05 4.4E-10 87.9 13.8 132 802-936 114-249 (287)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.2 3E-05 1E-09 80.0 15.8 146 740-905 8-154 (213)
125 3dra_A Protein farnesyltransfe 98.2 0.00019 6.4E-09 79.0 22.8 210 720-934 50-286 (306)
126 2vyi_A SGTA protein; chaperone 98.1 1.6E-05 5.6E-10 74.1 12.0 115 806-922 14-130 (131)
127 2lni_A Stress-induced-phosphop 98.1 1.7E-05 5.8E-10 74.5 11.4 112 807-921 19-133 (133)
128 3urz_A Uncharacterized protein 98.1 4.3E-05 1.5E-09 79.2 15.0 158 772-935 7-186 (208)
129 1p5q_A FKBP52, FK506-binding p 98.1 1.8E-05 6.2E-10 88.9 12.8 143 768-932 146-291 (336)
130 3u3w_A Transcriptional activat 98.1 0.00026 9E-09 77.4 21.9 158 744-901 81-266 (293)
131 3dra_A Protein farnesyltransfe 98.1 0.00041 1.4E-08 76.2 23.2 224 685-914 50-301 (306)
132 3rjv_A Putative SEL1 repeat pr 98.1 0.00018 6.2E-09 74.7 19.5 157 667-832 17-196 (212)
133 3upv_A Heat shock protein STI1 98.1 1.8E-05 6.2E-10 74.3 10.7 95 841-935 5-101 (126)
134 2kck_A TPR repeat; tetratricop 98.0 2E-05 6.8E-10 71.4 10.4 97 840-936 6-107 (112)
135 2e2e_A Formate-dependent nitri 98.0 1.1E-05 3.9E-10 80.8 9.5 119 816-936 22-145 (177)
136 1hxi_A PEX5, peroxisome target 98.0 1.2E-05 4.2E-10 75.4 9.1 97 840-936 17-115 (121)
137 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00012 4.2E-09 80.0 17.9 160 741-900 78-265 (293)
138 3gw4_A Uncharacterized protein 98.0 7.2E-05 2.5E-09 76.2 14.7 155 750-933 4-174 (203)
139 3q49_B STIP1 homology and U bo 98.0 3.5E-05 1.2E-09 73.2 11.0 98 839-936 8-107 (137)
140 4f3v_A ESX-1 secretion system 98.0 3.1E-05 1.1E-09 83.4 11.7 182 750-936 18-238 (282)
141 3sz7_A HSC70 cochaperone (SGT) 97.9 2.7E-05 9.2E-10 77.1 10.0 96 840-935 11-108 (164)
142 1na0_A Designed protein CTPR3; 97.9 4.3E-05 1.5E-09 70.5 10.7 97 840-936 9-107 (125)
143 1elw_A TPR1-domain of HOP; HOP 97.9 4.3E-05 1.5E-09 69.7 10.4 94 842-935 6-101 (118)
144 2lni_A Stress-induced-phosphop 97.9 4.7E-05 1.6E-09 71.4 10.0 96 840-935 16-113 (133)
145 2vgx_A Chaperone SYCD; alterna 97.9 2.1E-05 7.3E-10 76.7 7.7 108 800-910 16-127 (148)
146 4f3v_A ESX-1 secretion system 97.9 1.8E-05 6.2E-10 85.3 7.6 136 774-914 107-249 (282)
147 2dba_A Smooth muscle cell asso 97.9 7.6E-05 2.6E-09 71.5 11.4 96 840-935 28-128 (148)
148 1elw_A TPR1-domain of HOP; HOP 97.9 0.00012 4.3E-09 66.6 12.3 108 807-916 7-116 (118)
149 2fbn_A 70 kDa peptidylprolyl i 97.8 7.8E-05 2.7E-09 76.3 11.8 169 744-933 10-184 (198)
150 4gcn_A Protein STI-1; structur 97.8 4.7E-05 1.6E-09 72.0 9.0 94 841-934 9-111 (127)
151 2e2e_A Formate-dependent nitri 97.8 8.3E-05 2.8E-09 74.4 11.0 126 781-909 22-152 (177)
152 3gw4_A Uncharacterized protein 97.8 0.00027 9.4E-09 71.7 15.1 94 738-831 26-134 (203)
153 2vyi_A SGTA protein; chaperone 97.8 0.0001 3.5E-09 68.5 10.7 97 840-936 12-110 (131)
154 2dba_A Smooth muscle cell asso 97.8 0.00018 6.3E-09 68.7 12.6 76 842-917 67-144 (148)
155 3rkv_A Putative peptidylprolyl 97.8 0.0001 3.5E-09 72.6 10.7 64 872-935 63-126 (162)
156 2hr2_A Hypothetical protein; a 97.7 7.4E-05 2.5E-09 73.0 8.6 63 873-935 58-131 (159)
157 2xcb_A PCRH, regulatory protei 97.7 0.00011 3.7E-09 70.8 9.7 106 807-915 21-129 (142)
158 3gyz_A Chaperone protein IPGC; 97.7 0.00016 5.3E-09 70.8 11.0 103 800-905 31-137 (151)
159 2xev_A YBGF; tetratricopeptide 97.7 9.5E-05 3.2E-09 69.2 9.0 92 844-935 6-105 (129)
160 1a17_A Serine/threonine protei 97.7 0.00042 1.4E-08 67.6 13.9 124 772-899 16-144 (166)
161 3sz7_A HSC70 cochaperone (SGT) 97.7 0.00022 7.4E-09 70.4 11.7 105 806-913 13-120 (164)
162 3upv_A Heat shock protein STI1 97.7 0.0002 6.9E-09 67.0 10.7 107 807-916 7-122 (126)
163 3k9i_A BH0479 protein; putativ 97.6 3.4E-05 1.2E-09 71.6 4.8 84 852-935 2-90 (117)
164 1elr_A TPR2A-domain of HOP; HO 97.6 0.00011 3.8E-09 68.3 8.3 95 841-935 5-108 (131)
165 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00028 9.6E-09 82.7 13.5 142 769-932 268-412 (457)
166 2c2l_A CHIP, carboxy terminus 97.6 0.00025 8.7E-09 77.1 11.6 99 805-906 5-106 (281)
167 3q49_B STIP1 homology and U bo 97.6 0.0003 1E-08 66.6 10.4 99 804-904 9-109 (137)
168 1p5q_A FKBP52, FK506-binding p 97.6 0.00026 8.8E-09 79.4 11.5 65 872-936 196-260 (336)
169 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00055 1.9E-08 69.8 13.0 94 842-935 40-151 (198)
170 1wao_1 Serine/threonine protei 97.6 0.0001 3.5E-09 86.9 8.3 114 814-930 16-134 (477)
171 3n71_A Histone lysine methyltr 97.5 0.0003 1E-08 82.7 12.0 101 841-941 352-470 (490)
172 3ro3_A PINS homolog, G-protein 97.5 0.00031 1.1E-08 67.8 10.2 135 771-934 11-157 (164)
173 1wao_1 Serine/threonine protei 97.5 0.00053 1.8E-08 80.8 13.8 116 744-864 12-134 (477)
174 3q7a_A Farnesyltransferase alp 97.5 0.0042 1.4E-07 69.1 19.8 189 742-934 92-330 (349)
175 1elr_A TPR2A-domain of HOP; HO 97.5 0.00057 2E-08 63.4 11.1 76 842-918 40-124 (131)
176 3dss_A Geranylgeranyl transfer 97.5 0.0044 1.5E-07 68.5 19.7 191 720-916 91-319 (331)
177 4b4t_Q 26S proteasome regulato 97.5 0.00044 1.5E-08 79.8 12.2 162 772-933 58-243 (434)
178 3q7a_A Farnesyltransferase alp 97.5 0.02 6.7E-07 63.6 24.8 160 364-527 57-238 (349)
179 2xev_A YBGF; tetratricopeptide 97.4 0.0011 3.6E-08 61.9 12.2 100 812-914 10-118 (129)
180 2kck_A TPR repeat; tetratricop 97.4 0.00053 1.8E-08 61.7 9.5 96 809-906 11-111 (112)
181 1ihg_A Cyclophilin 40; ppiase 97.4 0.00062 2.1E-08 77.3 11.2 136 770-927 224-362 (370)
182 2l6j_A TPR repeat-containing p 97.3 0.00025 8.6E-09 64.2 6.4 92 840-931 4-103 (111)
183 3ma5_A Tetratricopeptide repea 97.3 0.00059 2E-08 61.2 8.6 66 870-935 5-70 (100)
184 3dss_A Geranylgeranyl transfer 97.3 0.016 5.6E-07 63.9 21.8 179 754-935 90-304 (331)
185 1hxi_A PEX5, peroxisome target 97.3 0.0007 2.4E-08 63.2 9.2 94 810-906 23-119 (121)
186 3ro3_A PINS homolog, G-protein 97.3 0.00064 2.2E-08 65.5 9.0 135 738-901 9-158 (164)
187 2if4_A ATFKBP42; FKBP-like, al 97.2 0.00036 1.2E-08 78.2 7.6 147 769-935 179-328 (338)
188 4gcn_A Protein STI-1; structur 97.2 0.0015 5E-08 61.5 10.6 60 771-832 10-70 (127)
189 1ihg_A Cyclophilin 40; ppiase 97.2 0.0013 4.4E-08 74.7 12.0 111 806-935 225-336 (370)
190 1na3_A Designed protein CTPR2; 97.2 0.00091 3.1E-08 57.9 8.4 81 840-920 9-91 (91)
191 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.0017 5.7E-08 76.0 13.3 65 872-936 317-381 (457)
192 1dce_A Protein (RAB geranylger 97.2 0.0039 1.3E-07 74.9 16.6 169 751-924 42-244 (567)
193 3k9i_A BH0479 protein; putativ 97.2 0.00021 7E-09 66.2 4.3 93 817-909 3-98 (117)
194 2kat_A Uncharacterized protein 97.2 0.00067 2.3E-08 62.2 7.5 78 858-935 3-82 (115)
195 2hr2_A Hypothetical protein; a 97.2 0.00042 1.4E-08 67.7 6.1 69 842-910 59-140 (159)
196 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0006 2E-08 76.4 8.1 151 738-906 179-333 (338)
197 3rkv_A Putative peptidylprolyl 97.1 0.00077 2.6E-08 66.2 8.0 127 770-916 12-142 (162)
198 4b4t_Q 26S proteasome regulato 97.1 0.0023 7.9E-08 73.7 13.2 157 778-934 13-203 (434)
199 3n71_A Histone lysine methyltr 97.1 0.0012 4.1E-08 77.5 10.1 114 850-981 319-450 (490)
200 1zu2_A Mitochondrial import re 97.0 0.00045 1.6E-08 67.3 4.9 86 851-936 13-121 (158)
201 3qwp_A SET and MYND domain-con 97.0 0.0013 4.6E-08 75.9 9.7 90 874-981 331-428 (429)
202 3bee_A Putative YFRE protein; 96.9 0.0036 1.2E-07 55.4 9.1 69 869-937 3-74 (93)
203 2l6j_A TPR repeat-containing p 96.8 0.0025 8.5E-08 57.4 7.6 67 870-936 2-68 (111)
204 1dce_A Protein (RAB geranylger 96.7 0.011 3.8E-07 70.9 14.1 150 782-936 42-222 (567)
205 1na3_A Designed protein CTPR2; 96.5 0.0055 1.9E-07 52.7 7.4 64 872-935 9-72 (91)
206 3qww_A SET and MYND domain-con 96.5 0.0053 1.8E-07 70.8 8.9 61 874-934 342-410 (433)
207 1klx_A Cysteine rich protein B 96.4 0.016 5.3E-07 55.3 10.6 64 871-936 56-127 (138)
208 1klx_A Cysteine rich protein B 96.3 0.01 3.4E-07 56.7 8.5 113 782-903 8-128 (138)
209 3lvg_A Clathrin heavy chain 1; 96.2 0.0012 4E-08 74.4 1.4 201 225-444 52-276 (624)
210 2kat_A Uncharacterized protein 96.2 0.0079 2.7E-07 54.9 6.7 79 823-904 4-85 (115)
211 3mkq_A Coatomer beta'-subunit; 96.1 0.1 3.5E-06 65.2 19.0 151 578-763 610-761 (814)
212 3ly7_A Transcriptional activat 96.0 0.052 1.8E-06 60.2 13.5 164 744-936 170-340 (372)
213 1zu2_A Mitochondrial import re 95.9 0.0047 1.6E-07 60.1 4.1 51 856-906 62-125 (158)
214 2kc7_A BFR218_protein; tetratr 95.9 0.025 8.7E-07 49.6 8.6 79 846-932 6-87 (99)
215 2kc7_A BFR218_protein; tetratr 95.7 0.019 6.4E-07 50.5 6.7 59 878-936 6-65 (99)
216 3qwp_A SET and MYND domain-con 95.6 0.062 2.1E-06 61.9 12.6 68 842-909 331-413 (429)
217 3mkq_A Coatomer beta'-subunit; 95.6 0.067 2.3E-06 66.9 14.0 154 750-932 611-775 (814)
218 3qww_A SET and MYND domain-con 95.6 0.038 1.3E-06 63.7 10.4 67 842-908 342-423 (433)
219 3ly7_A Transcriptional activat 94.9 0.099 3.4E-06 58.0 10.7 39 898-936 269-307 (372)
220 1wy6_A Hypothetical protein ST 94.8 1.7 5.8E-05 40.3 16.5 140 780-938 18-157 (172)
221 3ma5_A Tetratricopeptide repea 94.7 0.063 2.2E-06 47.5 7.2 59 770-830 8-67 (100)
222 1pc2_A Mitochondria fission pr 94.4 0.15 5.1E-06 49.0 9.4 65 870-934 30-99 (152)
223 3lvg_A Clathrin heavy chain 1; 94.0 0.0011 3.6E-08 74.8 -7.7 261 328-619 53-325 (624)
224 2v5f_A Prolyl 4-hydroxylase su 93.8 0.18 6.1E-06 45.1 8.2 74 840-913 5-87 (104)
225 3u64_A Protein TP_0956; tetrat 93.6 0.13 4.5E-06 54.8 7.7 82 857-938 180-272 (301)
226 1pc2_A Mitochondria fission pr 93.3 0.2 6.7E-06 48.2 7.8 35 873-907 72-106 (152)
227 3mkq_B Coatomer subunit alpha; 93.1 3.7 0.00013 40.3 16.7 104 746-867 13-116 (177)
228 3bee_A Putative YFRE protein; 92.5 0.48 1.7E-05 41.4 8.7 77 838-915 4-85 (93)
229 3mkq_B Coatomer subunit alpha; 90.2 8.1 0.00028 37.9 15.5 47 643-695 15-61 (177)
230 4ady_A RPN2, 26S proteasome re 89.4 51 0.0017 41.0 29.9 23 401-423 235-257 (963)
231 1wy6_A Hypothetical protein ST 88.2 13 0.00044 34.6 14.0 86 644-735 72-157 (172)
232 2v5f_A Prolyl 4-hydroxylase su 87.6 1.7 5.7E-05 38.6 8.1 65 871-935 4-75 (104)
233 1nzn_A CGI-135 protein, fissio 87.1 2.1 7.1E-05 39.5 8.4 86 818-905 15-107 (126)
234 3lpz_A GET4 (YOR164C homolog); 86.1 41 0.0014 36.5 19.3 168 331-525 37-215 (336)
235 4gns_B Protein CSD3, chitin bi 85.6 1.3 4.6E-05 53.9 8.2 52 881-932 346-397 (754)
236 2wpv_A GET4, UPF0363 protein Y 85.4 44 0.0015 36.0 22.0 83 736-833 132-217 (312)
237 1nzn_A CGI-135 protein, fissio 84.3 3.8 0.00013 37.8 8.7 86 783-871 15-106 (126)
238 1y8m_A FIS1; mitochondria, unk 83.7 17 0.00058 34.1 12.8 65 870-934 37-105 (144)
239 3u64_A Protein TP_0956; tetrat 83.6 4.2 0.00014 43.3 9.8 126 580-707 134-281 (301)
240 3lpz_A GET4 (YOR164C homolog); 81.5 64 0.0022 35.0 22.0 83 564-661 133-215 (336)
241 2wpv_A GET4, UPF0363 protein Y 81.1 64 0.0022 34.7 20.9 82 565-661 132-216 (312)
242 4b4t_P 26S proteasome regulato 78.7 80 0.0027 35.8 19.4 165 602-766 141-323 (445)
243 4gns_B Protein CSD3, chitin bi 78.0 16 0.00056 44.4 13.7 120 645-765 260-398 (754)
244 4h7y_A Dual specificity protei 75.7 18 0.00062 34.3 10.2 116 458-575 9-137 (161)
245 4ady_A RPN2, 26S proteasome re 74.7 1.8E+02 0.006 36.3 36.3 264 607-881 383-670 (963)
246 1wdy_A 2-5A-dependent ribonucl 72.8 54 0.0019 33.7 15.1 59 574-633 152-214 (285)
247 4h7y_A Dual specificity protei 72.4 25 0.00085 33.4 10.2 106 594-701 9-127 (161)
248 2qx5_A Nucleoporin NIC96; mRNA 71.2 1.8E+02 0.006 34.8 23.9 42 433-475 155-199 (661)
249 2qx5_A Nucleoporin NIC96; mRNA 70.8 1.8E+02 0.0062 34.7 21.8 84 673-767 299-385 (661)
250 1y8m_A FIS1; mitochondria, unk 70.0 43 0.0015 31.4 11.3 32 875-906 80-111 (144)
251 2p58_C Putative type III secre 68.2 34 0.0011 29.9 9.2 79 410-492 21-99 (116)
252 2ff4_A Probable regulatory pro 68.2 7.8 0.00027 43.5 7.2 67 875-941 174-245 (388)
253 3o48_A Mitochondria fission 1 67.9 27 0.00091 32.4 9.3 33 874-906 80-112 (134)
254 4b4t_P 26S proteasome regulato 65.3 1.8E+02 0.0063 32.8 20.8 94 773-866 141-244 (445)
255 2uwj_G Type III export protein 65.3 33 0.0011 29.9 8.5 79 410-492 20-98 (115)
256 1v54_E Cytochrome C oxidase po 64.9 43 0.0015 29.4 9.3 63 683-746 25-87 (109)
257 1wdy_A 2-5A-dependent ribonucl 64.2 51 0.0018 33.9 12.6 17 746-762 224-240 (285)
258 2ff4_A Probable regulatory pro 64.1 14 0.00047 41.4 8.3 65 467-532 176-245 (388)
259 1v54_E Cytochrome C oxidase po 63.3 20 0.00067 31.5 6.9 48 866-913 39-86 (109)
260 2p58_C Putative type III secre 61.9 55 0.0019 28.6 9.3 78 547-628 22-99 (116)
261 3o48_A Mitochondria fission 1 61.4 36 0.0012 31.5 8.9 66 869-934 37-106 (134)
262 2uwj_G Type III export protein 60.4 62 0.0021 28.2 9.3 87 309-401 21-107 (115)
263 3ffl_A Anaphase-promoting comp 59.7 53 0.0018 31.6 10.1 123 798-932 12-148 (167)
264 4fhn_B Nucleoporin NUP120; pro 59.1 78 0.0027 40.8 15.1 210 333-561 816-1050(1139)
265 3txn_A 26S proteasome regulato 57.5 1.3E+02 0.0045 33.4 14.5 23 775-797 105-127 (394)
266 1n11_A Ankyrin; clathrin, BAND 54.7 1.6E+02 0.0053 32.8 15.3 25 232-256 16-40 (437)
267 2y69_E Cytochrome C oxidase su 54.0 72 0.0025 29.5 9.3 62 684-746 69-130 (152)
268 4fhn_B Nucleoporin NUP120; pro 49.4 55 0.0019 42.3 11.3 53 774-831 817-869 (1139)
269 3eu9_A Huntingtin-interacting 49.0 1E+02 0.0036 30.4 11.5 20 438-457 46-65 (240)
270 3mv2_A Coatomer subunit alpha; 47.3 86 0.0029 33.6 10.3 59 863-935 196-256 (325)
271 3eiq_C Programmed cell death p 47.1 39 0.0013 37.1 7.9 247 466-731 58-320 (358)
272 2y69_E Cytochrome C oxidase su 46.8 47 0.0016 30.7 6.9 49 865-913 81-129 (152)
273 1k1a_A B-cell lymphoma 3-encod 46.4 2E+02 0.0068 28.4 13.2 24 609-632 17-40 (241)
274 1zbp_A Hypothetical protein VP 46.1 28 0.00096 36.4 6.2 57 849-905 6-64 (273)
275 3kea_A K1L; tropism, ANK repea 45.2 2.3E+02 0.0078 29.4 13.8 20 573-592 132-151 (285)
276 3kea_A K1L; tropism, ANK repea 44.9 1.5E+02 0.0053 30.7 12.3 144 230-384 31-181 (285)
277 3ffl_A Anaphase-promoting comp 44.1 65 0.0022 31.0 7.9 53 744-796 26-90 (167)
278 3jxi_A Vanilloid receptor-rela 41.9 36 0.0012 34.9 6.6 20 408-427 14-33 (260)
279 1qsa_A Protein (soluble lytic 40.8 5.1E+02 0.018 30.5 37.6 265 330-626 73-347 (618)
280 3jxi_A Vanilloid receptor-rela 39.9 60 0.0021 33.1 7.9 115 472-591 12-161 (260)
281 4g8k_A 2-5A-dependent ribonucl 38.3 3.8E+02 0.013 28.2 15.9 81 575-656 173-259 (337)
282 3hra_A Ankyrin repeat family p 37.4 1.8E+02 0.0063 27.8 10.8 60 575-634 111-174 (201)
283 1zbp_A Hypothetical protein VP 37.2 1.9E+02 0.0065 30.1 10.8 51 779-831 7-58 (273)
284 3ljn_A Hypothetical protein; a 36.9 1.2E+02 0.004 32.8 10.2 19 574-592 177-195 (364)
285 2l0z_A Glycoprotein G2; zinc-b 36.8 11 0.00037 26.7 0.8 13 1062-1074 16-29 (42)
286 1k1a_A B-cell lymphoma 3-encod 35.3 1.1E+02 0.0036 30.6 8.9 22 372-393 17-38 (241)
287 1n11_A Ankyrin; clathrin, BAND 34.9 2.1E+02 0.007 31.7 12.1 18 440-457 119-136 (437)
288 4b4t_R RPN7, 26S proteasome re 33.1 1.1E+02 0.0038 34.4 9.2 93 840-932 131-234 (429)
289 3ltj_A Alpharep-4; protein eng 32.9 3.3E+02 0.011 26.0 18.4 186 417-614 14-199 (201)
290 3t8k_A Uncharacterized protein 32.9 2.8E+02 0.0097 26.6 11.2 90 578-668 14-109 (186)
291 3hra_A Ankyrin repeat family p 32.8 3.3E+02 0.011 25.8 12.2 76 577-657 12-93 (201)
292 2zu6_B Programmed cell death p 32.3 94 0.0032 33.3 7.9 66 464-530 168-235 (307)
293 3ltm_A Alpha-REP4; protein eng 32.2 3.5E+02 0.012 26.1 19.7 48 429-476 93-140 (211)
294 3eu9_A Huntingtin-interacting 30.7 1.2E+02 0.0041 30.0 8.3 20 574-593 214-233 (240)
295 1qsa_A Protein (soluble lytic 30.6 7.2E+02 0.025 29.2 36.6 96 212-310 57-152 (618)
296 3b7b_A Euchromatic histone-lys 30.2 2.6E+02 0.009 27.5 10.9 17 679-695 218-234 (237)
297 1qc6_A EVH1 domain from ENA/VA 29.8 20 0.0007 33.1 1.8 40 1023-1070 44-87 (130)
298 3aji_A 26S proteasome non-ATPa 29.1 4E+02 0.014 25.9 12.0 18 439-456 11-28 (231)
299 2etb_A Transient receptor pote 28.5 1.6E+02 0.0056 29.6 9.0 54 470-524 7-70 (256)
300 3b7b_A Euchromatic histone-lys 28.0 1.1E+02 0.0036 30.6 7.3 39 623-661 195-235 (237)
301 3aji_A 26S proteasome non-ATPa 27.0 3.7E+02 0.013 26.1 11.3 19 469-487 10-28 (231)
302 4g8k_A 2-5A-dependent ribonucl 26.7 5.7E+02 0.019 26.7 14.3 14 791-804 316-329 (337)
303 4b4t_R RPN7, 26S proteasome re 26.4 2.5E+02 0.0086 31.4 10.7 61 635-695 133-195 (429)
304 2nsz_A Programmed cell death p 25.7 2.2E+02 0.0074 26.0 8.1 63 332-395 10-77 (129)
305 3esl_A Checkpoint serine/threo 25.4 3.5E+02 0.012 26.8 9.9 94 868-987 73-171 (202)
306 3t8k_A Uncharacterized protein 23.1 5E+02 0.017 24.8 11.3 16 619-634 134-150 (186)
307 2nsz_A Programmed cell death p 22.2 2.8E+02 0.0095 25.2 8.1 58 435-492 11-73 (129)
308 2pnn_A Transient receptor pote 22.1 2.2E+02 0.0077 28.9 8.6 19 573-591 151-169 (273)
309 3ltm_A Alpha-REP4; protein eng 21.9 5.3E+02 0.018 24.7 20.1 153 328-490 32-184 (211)
310 2hgo_A CASSIICOLIN; toxin, dis 21.5 19 0.00066 22.1 -0.0 13 1063-1075 8-22 (27)
311 3mkr_B Coatomer subunit alpha; 21.4 1.3E+02 0.0044 32.2 6.3 60 863-936 187-248 (320)
312 2zu6_B Programmed cell death p 20.4 7.8E+02 0.027 26.0 13.4 64 742-805 170-238 (307)
313 1ug3_A EIF4GI, eukaryotic prot 20.1 2.6E+02 0.0089 30.2 8.8 94 230-323 14-114 (339)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-39 Score=398.48 Aligned_cols=518 Identities=10% Similarity=0.005 Sum_probs=365.9
Q ss_pred HHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHH
Q 038364 338 FYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQ 417 (1076)
Q Consensus 338 ~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 417 (1076)
.+.++|.+..++.+|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 46678888999999999998 8999999999999999999999999999984 46788999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCh
Q 038364 418 IHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDI 497 (1076)
Q Consensus 418 i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~ 497 (1076)
++..++.. .++..+++.++.+|.++|++++|.++|+++...+.. ..++.+.+ -...+..++.
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~ 200 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLL-----------MQDGGIKLEA 200 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------------------------CCCSSCCHHH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccc-----------ccccccchhH
Confidence 99987543 678899999999999999999999999965333200 00000000 0112333345
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchH---HHHHH-HHHHHHcCCCCchhHHHHH
Q 038364 498 ITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLK---YGRES-HGYILRNGLDYDLYVGTSL 573 (1076)
Q Consensus 498 ~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~---~a~~i-~~~~~~~g~~~d~~v~~aL 573 (1076)
.+|+.++.+|.+.|++++|+++|++|.+.+ |+..+....+..+....... ....+ +..+...+......+++.+
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 555555555555555555555555555543 44332222221111111111 11111 3333334444456677888
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhH
Q 038364 574 MDMYVKNDCLQNAQEVFDNMKN--RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKE 651 (1076)
Q Consensus 574 i~~y~k~g~~~~A~~lf~~m~~--~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~ 651 (1076)
+.+|.++|++++|.++|+++.+ +|..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..+++.++.+|.+.|++++
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999987 899999999999999999999999999999776 3477889999999999999999
Q ss_pred HHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 038364 652 ALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLK 731 (1076)
Q Consensus 652 A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~ 731 (1076)
|.++|+++.+.. ..+..+|+.++..|.+.|++++|.++|+++.+. .|
T Consensus 358 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~------------------------------ 404 (597)
T 2xpi_A 358 LYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DP------------------------------ 404 (597)
T ss_dssp HHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT------------------------------
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC------------------------------
Confidence 999999998542 346788888888888888888888888888652 22
Q ss_pred cCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 038364 732 NGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFT 808 (1076)
Q Consensus 732 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~ 808 (1076)
.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.. ..+..+|.
T Consensus 405 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 479 (597)
T 2xpi_A 405 ----QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLN 479 (597)
T ss_dssp ----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 2344556666666666777777766665542 356677777777777777777777777777642 33566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCC--cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDY---NIIPT--IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGS 881 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~---g~~p~--~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a 881 (1076)
.+...|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ .. +.+..+|..+..+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 77777777777777777777776532 45666 568888888888888888888888876 22 3477889999999
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
|...|++++|...++++++++|+++..|..|+++|.
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999988875
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-40 Score=404.20 Aligned_cols=492 Identities=10% Similarity=-0.021 Sum_probs=367.2
Q ss_pred HHHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHH
Q 038364 235 FHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGV 314 (1076)
Q Consensus 235 ~~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 314 (1076)
..+.++|.+..++.+|+.++.+++..|+.++..|.+.|++ ++|+.+|.+|.. ..||..++..++.+|.+.|+++.|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQY-KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCc-hHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 4467789999999999999999999999999999999999 999999999984 5678899999999999999999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCC------------------ChhhHHHHHHHHHhCCC
Q 038364 315 EVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLE------------------DDLLWNEIIMVKLRNEK 376 (1076)
Q Consensus 315 ~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~------------------d~~s~n~li~~~~~~g~ 376 (1076)
+++..+... .++..+++.++.+|.++|++++|.++|+++.... ++++|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999987643 5789999999999999999999999999544313 48899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCcH--HHHHH-HHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 038364 377 WENAIKLFREMQFSSAKAIS-RTIVKMLQACAKVGAFH--EGKQI-HGYVLKSALESNLSVCNCLISMYSRNNKLELATR 452 (1076)
Q Consensus 377 ~~eAl~lf~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~--~a~~i-~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~ 452 (1076)
+++|+++|++|.+.+ |+. ..+..+...+...+..+ .+..+ +..+...+......+++.++.+|.++|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999998754 443 33444433222221111 11111 3444444545556677788888999999999999
Q ss_pred HHHhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 038364 453 VFDSMKD--HNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRP 530 (1076)
Q Consensus 453 lf~~m~~--~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~p 530 (1076)
+|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+.. +..+|+.++.++.+.|++++|.+++++|.+.. |
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 370 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH--P 370 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--c
Confidence 9999877 78889999999999999999999999999876654 67778888888888888888877777776543 3
Q ss_pred CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHH
Q 038364 531 NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISG 607 (1076)
Q Consensus 531 d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~ 607 (1076)
+ +..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+
T Consensus 371 ~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 371 E----------------------------------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp T----------------------------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred c----------------------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2 456778888999999999999999988753 568899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHH
Q 038364 608 YCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRES 687 (1076)
Q Consensus 608 ~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eA 687 (1076)
|.+.|++++|+++|++|.+.+ ..+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|+.++..|.+.|++++|
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999998764 3478889999999999999999999999998753 33678899999999999999999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHhcC
Q 038364 688 LKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD--AYVATGLIDMYSKSGNLKSAREVFRKSA 765 (1076)
Q Consensus 688 l~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 765 (1076)
+++|+++.+.. .+.+..|+ ..++..++.+|.+.|++++|.+.|+++.
T Consensus 495 ~~~~~~~~~~~-------------------------------~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 495 INHFQNALLLV-------------------------------KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHHHHHH-------------------------------HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-------------------------------hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999886530 01123343 4455666666666666666666666544
Q ss_pred ---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 038364 766 ---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI 805 (1076)
Q Consensus 766 ---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~ 805 (1076)
..+..+|..+..+|.+.|++++|.+.|+++.+ +.|+..
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~ 584 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEI 584 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCCh
Confidence 23556777777777777777777777777776 455543
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=7.1e-26 Score=269.71 Aligned_cols=184 Identities=15% Similarity=0.189 Sum_probs=150.6
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---------cHHHHHHHHHHHHhCCCCCH
Q 038364 361 DLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGA---------FHEGKQIHGYVLKSALESNL 431 (1076)
Q Consensus 361 ~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~---------~~~a~~i~~~~~~~g~~~d~ 431 (1076)
...++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.|.++++.|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 345888899999999999999999999999999999999999999987654 56788888888888888888
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHhcC----CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038364 432 SVCNCLISMYSRNNKLELATRVFDSMK----DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGH 507 (1076)
Q Consensus 432 ~v~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~ 507 (1076)
.+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 888888888888888888888887774 4677788888888888888888888888888888888888888888888
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 038364 508 FTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTE 544 (1076)
Q Consensus 508 ~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~ 544 (1076)
++.|+.++|.++|++|.+.|..|+..||..++..++.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888888888888888888877887777777777664
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=4.1e-26 Score=271.79 Aligned_cols=205 Identities=17% Similarity=0.123 Sum_probs=119.3
Q ss_pred HHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc---------hHH
Q 038364 481 AWSLFNKMNSSRIQPDI-ITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRL---------LKY 550 (1076)
Q Consensus 481 A~~lf~~M~~~g~~pd~-~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~---------~~~ 550 (1076)
+..+++++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|++||.+||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555554444332 23555555555556666666666666555555666666666666554432 444
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIK 630 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~ 630 (1076)
|.++++.|.+.|+.||.. +||+||.+|++.|++++|.++|++|.+.|+.
T Consensus 89 A~~lf~~M~~~G~~Pd~~-------------------------------tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~ 137 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEA-------------------------------TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 137 (501)
T ss_dssp HHHHHHHHHHTTCCCCHH-------------------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCHH-------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 555555555555544444 4444445555555555555666666666777
Q ss_pred CCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHH
Q 038364 631 PDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLL 710 (1076)
Q Consensus 631 pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL 710 (1076)
||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++
T Consensus 138 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~ 217 (501)
T 4g26_A 138 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIE 217 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHH
T ss_pred CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhcC
Q 038364 711 QTCGGL 716 (1076)
Q Consensus 711 ~a~~~~ 716 (1076)
..++..
T Consensus 218 ~~F~s~ 223 (501)
T 4g26_A 218 EWFKSE 223 (501)
T ss_dssp HHHHSH
T ss_pred HHHhcC
Confidence 666543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=2.5e-22 Score=232.28 Aligned_cols=338 Identities=14% Similarity=0.107 Sum_probs=227.8
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-cchhhhhhhhhhcCC
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-VSWNSLVSGYSIWGQ 648 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-~t~~~Li~~y~k~g~ 648 (1076)
+...+.+.|++++|...++.... .+..+|+.+...|.+.|++++|++.|+++.+. .|+. .+|..+...|.+.|+
T Consensus 39 l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCC
Confidence 33344444444444444443321 23444555555555555555555555555443 2332 235555555555555
Q ss_pred hhHHHHHHHHhHhcCCCC-chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCchhHHHHH
Q 038364 649 SKEALVIIHHMKNSGIYP-NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLLQNGKEIH 726 (1076)
Q Consensus 649 ~~~A~~lf~~m~~~gi~p-d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~ 726 (1076)
+++|.+.|+++.+. .| +...+..+...+.+.|++++|.+.|+++.+. .| +..+|..+...+...|++++|...+
T Consensus 117 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 192 (388)
T 1w3b_A 117 MEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp SSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555443 22 2334444555555555555555555555542 23 2345555555555556666666665
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 038364 727 CLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD 803 (1076)
Q Consensus 727 ~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd 803 (1076)
+.+++.. +.+...+..+...|...|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+ ..|+
T Consensus 193 ~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~ 269 (388)
T 1w3b_A 193 EKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPH 269 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSS
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 5555531 2234566677778888888888888887654 34567888889999999999999999999988 4554
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 038364 804 -AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLG 880 (1076)
Q Consensus 804 -~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~ 880 (1076)
..++..+...+...|++++|.+.|+++.+. .+.+...+..++..+.+.|++++|.+.++++ ...| +..+|..+..
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 347 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 457888888899999999999999998864 2445778899999999999999999999987 3444 5778999999
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
++...|++++|+..++++++++|+++..|..++.+|.+.|+
T Consensus 348 ~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 348 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999887764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=1.2e-21 Score=226.43 Aligned_cols=351 Identities=15% Similarity=0.115 Sum_probs=305.3
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCCh
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQS 649 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~ 649 (1076)
+...+.+.|++++|.+.|+++.. .+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 34567788999999999887753 355677788888999999999999999988764 44667899999999999999
Q ss_pred hHHHHHHHHhHhcCCCCc-hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh-hhHHHHHHHHhcCCCchhHHHHHH
Q 038364 650 KEALVIIHHMKNSGIYPN-VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS-TTMSSLLQTCGGLGLLQNGKEIHC 727 (1076)
Q Consensus 650 ~~A~~lf~~m~~~gi~pd-~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~-~t~~~lL~a~~~~g~~~~a~~i~~ 727 (1076)
++|.+.|+++.+. .|+ ...|..+..++.+.|++++|.+.|+++.+. .|+. ..+..+...+...|++++|.+.+.
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999874 344 567999999999999999999999999874 5654 456667778888999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-
Q 038364 728 LCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD- 803 (1076)
Q Consensus 728 ~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd- 803 (1076)
.+++. .+.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|++..+ ..|+
T Consensus 160 ~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 160 KAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 99885 233567889999999999999999999998763 4567899999999999999999999999988 4665
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 038364 804 AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLG 880 (1076)
Q Consensus 804 ~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~ 880 (1076)
..++..+...+...|++++|.+.|+++.+. .|+ ...|..++..|.+.|++++|.+.++++. .+.+..+|..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 568888999999999999999999999863 344 6789999999999999999999999972 4567889999999
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.+...|++++|+..+++++++.|++...+..++.+|.+.|++++|.+.++++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999965
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.5e-20 Score=220.04 Aligned_cols=433 Identities=9% Similarity=-0.027 Sum_probs=268.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc-ccHHHHHH
Q 038364 462 LSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNG-SSVSVVLQ 540 (1076)
Q Consensus 462 ~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~-~t~~~ll~ 540 (1076)
...|......+.+.|++++|++.|+++.+.. ||..+|..+..++.+.|++++|+..++++.+.+ |+. ..+..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHH
Confidence 3456667777888888888888888887765 578888888888888888888888888877655 443 34555555
Q ss_pred HHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 038364 541 AVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKM 620 (1076)
Q Consensus 541 a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~l 620 (1076)
++...|++++|...+..+.+.+.. +......++..+.+..... .+.+.
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~ 129 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMS-------------------------------KLKEK 129 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHH-------------------------------HHTTC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHH-------------------------------HHHHH
Confidence 555666666666666655555432 2222222333332222222 22222
Q ss_pred HHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCC---------CCchHHHHHHHHHHhc---CCChhHHH
Q 038364 621 LNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGI---------YPNVVTWTSLISGSLQ---NENYRESL 688 (1076)
Q Consensus 621 f~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi---------~pd~~ty~~LI~~~~~---~g~~~eAl 688 (1076)
+..+...+..|+...+..-...............+...+..... ..+...|......+.. .|++++|+
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp ---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred HHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 22221111111111111111001111111111111111111000 1123333333333333 67777777
Q ss_pred HHHHHHhh-----cCCCC--------ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 038364 689 KFFIQMQQ-----EDIKP--------NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 689 ~l~~~m~~-----~gi~p--------d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~ 755 (1076)
++|+++.+ ....| +..++..+...+...|++++|...+..+++.. |+...+..+...|.+.|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHH
Confidence 77777765 21111 23456666667777777777777777777653 23666777778888888888
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 756 SAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQP-DAITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 756 ~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
+|.+.++++.+ .+...|..+...|...|++++|+..|+++.+. .| +...+..+...+...|++++|.++++.+.
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888876653 35567788888888888888888888888874 33 34567777777888888888888888877
Q ss_pred hcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHH---cCCchHHHHHHHHHhc
Q 038364 832 TDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM----PFKPD----ATIWGALLGSCRI---HGHLEYAEIASRRLFK 900 (1076)
Q Consensus 832 ~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m----~~~pd----~~~~~~Ll~a~~~---~g~~e~A~~~~~~l~~ 900 (1076)
+.. +.+...+..+...|.+.|++++|.+.++++ +..++ ..+|..+...+.. .|++++|...++++++
T Consensus 366 ~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 366 RKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 541 224567778888888888888888888776 22222 3478888888888 8889999999999888
Q ss_pred CCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 901 LEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 901 l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 888888888889999999999999999888886543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=3.5e-20 Score=218.24 Aligned_cols=318 Identities=13% Similarity=0.057 Sum_probs=221.0
Q ss_pred chhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhh
Q 038364 566 DLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSG 642 (1076)
Q Consensus 566 d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~ 642 (1076)
+...+..+...|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 444555566666666666666666655432 345555555566666666666666666555543 1233444555555
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCc-h---HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCC
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPN-V---VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGL 718 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd-~---~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~ 718 (1076)
|.+.|++++|.+.|+++.+. .|+ . ..|..++..+...+ +..+...+...|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 55555555555555555442 122 2 34444433311100 1112233556677
Q ss_pred chhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHEL 795 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M 795 (1076)
+++|...+..+.+. ...+..++..+..+|.+.|++++|.+.|+++. ..+..+|+.+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776664 23356777888888888888888888888765 356788999999999999999999999999
Q ss_pred HHCCCCCCHHH-HHHH------------HHHHHhcCCHHHHHHHHHHhhhcCCCCCC-----cccHHHHHHHHHhcCCHH
Q 038364 796 LETGFQPDAIT-FTAL------------LAACKNSGLVEEGWKYFDSMSTDYNIIPT-----IEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 796 ~~~g~~Pd~~t-~~~l------------l~a~~~~g~~~eA~~~~~~m~~~~g~~p~-----~~~y~~li~~l~r~G~l~ 857 (1076)
.+ ..|+... +..+ ...|.+.|++++|.++|+++.+. .|+ ..+|..++.++.+.|+++
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 87 4666544 3333 67899999999999999999864 354 457899999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 858 EAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 858 eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
+|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++.+
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 999999987 3334 688999999999999999999999999999999999999999943
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.6e-19 Score=212.06 Aligned_cols=445 Identities=10% Similarity=-0.035 Sum_probs=244.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 038364 434 CNCLISMYSRNNKLELATRVFDSMK--DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHG 511 (1076)
Q Consensus 434 ~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g 511 (1076)
+..+...|.+.|++++|...|+++. .||...|..+...|.+.|++++|++.|+++.+.++. +..+|..+..++.+.|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHh
Confidence 3444455566666666666666552 355666666666666666666666666666655433 5556666666666666
Q ss_pred ChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHH---HHHHHHhCCCHHHHHH
Q 038364 512 SYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTS---LMDMYVKNDCLQNAQE 588 (1076)
Q Consensus 512 ~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~a---Li~~y~k~g~~~~A~~ 588 (1076)
++++|+..|+++...+. ++......++..+........+.+.+..+.+.+..++...... .............+..
T Consensus 88 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 66666666666665542 2333333333333332222222222221111111111000000 0000000111111111
Q ss_pred HHhhcC---------CC-CHhHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCCCCccchhhhhhhhhhcCChh
Q 038364 589 VFDNMK---------NR-NIVAWNSLISGYCF---KGLFVNAKKMLNQMEE-----EEIKPDLVSWNSLVSGYSIWGQSK 650 (1076)
Q Consensus 589 lf~~m~---------~~-d~~~~n~lI~~~~~---~g~~~~A~~lf~~M~~-----~g~~pd~~t~~~Li~~y~k~g~~~ 650 (1076)
.+.... .+ +...|......+.. .|++++|+..|+++.+ ....|+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------------- 232 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL-------------- 232 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH--------------
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc--------------
Confidence 111111 11 13333333333333 6667777777766665 2112221100
Q ss_pred HHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHH
Q 038364 651 EALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCL 730 (1076)
Q Consensus 651 ~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~ 730 (1076)
-..+...|..+...+...|++++|.+.|+++.+.. |+..++..+...+...|++++|...+..++
T Consensus 233 -------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 233 -------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp -------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred -------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 01123344444555555555555555555554432 224444455555555555555555555555
Q ss_pred HcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 038364 731 KNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQP-DAIT 806 (1076)
Q Consensus 731 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~P-d~~t 806 (1076)
+. ...+..++..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|+..|+++.+. .| +..+
T Consensus 298 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 374 (514)
T 2gw1_A 298 KL-DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEV 374 (514)
T ss_dssp TT-CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHH
T ss_pred hc-CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHH
Confidence 43 12234556666666777777777777776543 234566777777777777777777777777763 33 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHh---cCCHHHHHHHHHhC-C-CCCCHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGK---AGYLDEAWDFIRTM-P-FKPDATIWGA 877 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r---~G~l~eA~~l~~~m-~-~~pd~~~~~~ 877 (1076)
+..+...+...|++++|.++++.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ . .+.+..+|..
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 667777788888888888888877653222222 3378888888888 89999999888886 2 2345678889
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHH
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLM 912 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L 912 (1076)
+...+...|++++|...++++++++|+++..+..+
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999999999999999999987776655
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=5.1e-19 Score=213.22 Aligned_cols=426 Identities=10% Similarity=0.002 Sum_probs=235.6
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038364 463 SSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAV 542 (1076)
Q Consensus 463 ~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~ 542 (1076)
..|..+...+.+.|++++|++.|+++.+..+. +..+|..+..++.+.|++++|++.|+++.+.. |+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~----------- 91 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK--PD----------- 91 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-----------
Confidence 35666667777777777777777777766544 66777777777777777777777777776654 33
Q ss_pred HhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 038364 543 TELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLN 622 (1076)
Q Consensus 543 ~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~ 622 (1076)
+..++..+...|.+.|++++|...|+.+. .+....+..+..+...+...+|...++
T Consensus 92 -----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~ 147 (537)
T 3fp2_A 92 -----------------------HSKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLN 147 (537)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHH
T ss_pred -----------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 22233344444455555555555554221 111122222333334444455555555
Q ss_pred HHHHcC--CCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCch-HHHHHHHHHHhcC--------CChhHHHHHH
Q 038364 623 QMEEEE--IKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV-VTWTSLISGSLQN--------ENYRESLKFF 691 (1076)
Q Consensus 623 ~M~~~g--~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~-~ty~~LI~~~~~~--------g~~~eAl~l~ 691 (1076)
++.... ..+........+..|....+.+.+...+....+. .+.. ..+..+...+... |++++|.+++
T Consensus 148 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~ 225 (537)
T 3fp2_A 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY 225 (537)
T ss_dssp HHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 553220 0111112223333333444444433333222211 1111 1222222222221 3556666666
Q ss_pred HHHhhcCCCCC--------hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHh
Q 038364 692 IQMQQEDIKPN--------STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRK 763 (1076)
Q Consensus 692 ~~m~~~gi~pd--------~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 763 (1076)
+++.+. .|+ ..++..+...+...|++++|...+..+++. .|+...+..+...|.+.|++++|.+.|++
T Consensus 226 ~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 226 HSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 666542 233 123444444555666666666666666663 34455666666666667777777766665
Q ss_pred cC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 038364 764 SA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT 839 (1076)
Q Consensus 764 m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~ 839 (1076)
.. ..+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|.++++.+.+.. +.+
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~ 377 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTL 377 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 54 234556667777777777777777777777663 333 3456666666777777777777777766531 223
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHc----------CCchHHHHHHHHHhcC
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTMP--------FKPDATIWGALLGSCRIH----------GHLEYAEIASRRLFKL 901 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m~--------~~pd~~~~~~Ll~a~~~~----------g~~e~A~~~~~~l~~l 901 (1076)
...+..+...|.+.|++++|.+.++++. ..-....+..+...+... |++++|+..+++++++
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 4566677777777777777777776641 111122234444556666 7888888888888888
Q ss_pred CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 902 EPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 902 ~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88887888888888888888888888888775543
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=3.7e-15 Score=186.69 Aligned_cols=285 Identities=14% Similarity=0.098 Sum_probs=222.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCC
Q 038364 604 LISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNEN 683 (1076)
Q Consensus 604 lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~ 683 (1076)
+...+...|.+++|..+|++.. -.....+.+ +-..|++++|.++.++.. +..+|..+..++.+.|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 4456677888888888888742 011111222 226788888888888663 57788899999999999
Q ss_pred hhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHh
Q 038364 684 YRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRK 763 (1076)
Q Consensus 684 ~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 763 (1076)
+++|++.|.+. -|...|..+..+|.+.|+++++.+.+....+.. +++.+.+.++..|+|.+++++.....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999664 466778889999999999999999998888743 55555566999999999998644443
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccH
Q 038364 764 SANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHY 843 (1076)
Q Consensus 764 m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y 843 (1076)
..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|
T Consensus 1191 -~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aW 1253 (1630)
T 1xi4_A 1191 -NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTW 1253 (1630)
T ss_pred -hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHH
Confidence 3556677888889999999999999999885 378888999999999999999887762 35788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc--CC
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS--NR 921 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~--G~ 921 (1076)
..+..++...|++..|........ -++..+..++.-|...|.+++|+.++++.++++|.+.+.|.-|+.+|++- ++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 888888888999999988776543 34455668888999999999999999999999999999999999999875 45
Q ss_pred hHHHHHHHHH
Q 038364 922 WEDVERLRHS 931 (1076)
Q Consensus 922 ~~eA~~~~~~ 931 (1076)
..|+.+.+..
T Consensus 1332 lmEhlk~f~~ 1341 (1630)
T 1xi4_A 1332 MREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=8.3e-18 Score=202.59 Aligned_cols=438 Identities=10% Similarity=-0.004 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038364 432 SVCNCLISMYSRNNKLELATRVFDSMK---DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHF 508 (1076)
Q Consensus 432 ~v~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~ 508 (1076)
..+..+...|.+.|++++|...|+++. ..+...|..+...|.+.|++++|++.|+++.+.+.. +..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 345556667777777777777777763 245667777888888888888888888888776544 6777888888888
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhCCCHHHH
Q 038364 509 THGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGL--DYDLYVGTSLMDMYVKNDCLQNA 586 (1076)
Q Consensus 509 ~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~--~~d~~v~~aLi~~y~k~g~~~~A 586 (1076)
..|++++|++.|+.+... |+... ..+..+...+....+...+..+++... ..........+..|....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLN---GDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhcC---CCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 888888888888633222 33211 112233334444556666665543210 11111123445556667777777
Q ss_pred HHHHhhcCCCCHh---HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCcc-chhhhhhhhhhcCChhHHHH
Q 038364 587 QEVFDNMKNRNIV---AWNSLISGYCFK--------GLFVNAKKMLNQMEEEEIKPDLV-SWNSLVSGYSIWGQSKEALV 654 (1076)
Q Consensus 587 ~~lf~~m~~~d~~---~~n~lI~~~~~~--------g~~~~A~~lf~~M~~~g~~pd~~-t~~~Li~~y~k~g~~~~A~~ 654 (1076)
...+......+.. .+..+...+... |++++|+.+|+++.+. .|+.. .+..+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~--------------- 242 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENA--------------- 242 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH---------------
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHH---------------
Confidence 7777666553332 233333222221 2455555555555433 12211 00000
Q ss_pred HHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCC
Q 038364 655 IIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF 734 (1076)
Q Consensus 655 lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~ 734 (1076)
...|..+...+...|++++|.+.|++..+. .|+..++..+...+...|+++.|...+..+++..
T Consensus 243 -------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 243 -------------ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred -------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 123444444555555555666555555542 3444555555555666666666666666655532
Q ss_pred CCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 038364 735 IKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTAL 810 (1076)
Q Consensus 735 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~l 810 (1076)
..+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 384 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFF 384 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 23456677788888888888888888887652 45678888889999999999999999998874 344 4577777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhc----------CCHHHHHHHHHhC-C-CCCCHHH
Q 038364 811 LAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKA----------GYLDEAWDFIRTM-P-FKPDATI 874 (1076)
Q Consensus 811 l~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~----------G~l~eA~~l~~~m-~-~~pd~~~ 874 (1076)
...+...|++++|.+.|+.+.+...-.++ ...+..+...|.+. |++++|.+.+++. . .+.+..+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 88889999999999999887654211111 11244556777787 9999999999987 2 3345778
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 875 WGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 875 ~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
|..+...+...|++++|...+++++++.|++.....
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999998866544
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=4.2e-15 Score=186.13 Aligned_cols=641 Identities=10% Similarity=0.081 Sum_probs=416.9
Q ss_pred hhhHHHHHHHccCChhhHHHHhhhcCC--C-----CcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcc------
Q 038364 229 MVKSLIFHYLEFGDFTSAAKAFFLYFS--R-----SYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSR------ 295 (1076)
Q Consensus 229 ~~~~ll~~y~~~g~~~~A~~~f~~~~~--~-----~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~------ 295 (1076)
-...+.+.+-+.|-+..|.+.++.+.. | +...=..++.-+ ..=.. +.+++++++|...+++-|-.
T Consensus 609 d~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~f-g~l~~-~~s~~~l~~~l~~n~~qnlq~vvqva 686 (1630)
T 1xi4_A 609 DRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYF-GSLSV-EDSLECLRAMLSANIRQNLQICVQVA 686 (1630)
T ss_pred cHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHH-hcCCH-HHHHHHHHHHHHHhHhhhhhhhhhHH
Confidence 345555666678888888888775521 1 122222233333 33334 78888888888765543321
Q ss_pred -------hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCC-----------
Q 038364 296 -------ILTIILKLCTKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD----------- 357 (1076)
Q Consensus 296 -------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~----------- 357 (1076)
+-..+++.+-+.+..+.---..+.++ .+..|+.+....|.+.+|.|.+.+.+++-.+-.-
T Consensus 687 ~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk 764 (1630)
T 1xi4_A 687 SKYHEQLSTQSLIELFESFKSFEGLFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLK 764 (1630)
T ss_pred HHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHh
Confidence 11222222222222222122222222 2556889999999999999999998887655221
Q ss_pred ---CC----------------ChhhH------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-------------H
Q 038364 358 ---LE----------------DDLLW------NEIIMVKLRNEKWENAIKLFREMQFSSAKAISRT-------------I 399 (1076)
Q Consensus 358 ---~~----------------d~~s~------n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t-------------~ 399 (1076)
.+ |.+.| ...|.+|++.-++..+-.+...+..-+. +... .
T Consensus 765 ~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~--~e~~ik~ll~~v~~~~~~ 842 (1630)
T 1xi4_A 765 EAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDC--SEDVIKNLILVVRGQFST 842 (1630)
T ss_pred hCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCC--CHHHHHHHHHHhccCCCH
Confidence 01 11111 2346666665555544444444333221 2222 2
Q ss_pred HHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHH----------HHHHhcCCCChhH-----
Q 038364 400 VKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELAT----------RVFDSMKDHNLSS----- 464 (1076)
Q Consensus 400 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~----------~lf~~m~~~d~~s----- 464 (1076)
..|+..+-+.+++......++.-+..| ..|+.++|+|...|...++-.+.. -+=+-..++|...
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay 921 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAY 921 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHh
Confidence 233444445555555556666666777 458889999999988654322210 0000011222211
Q ss_pred -----HHHHHHHHHhCCChHH-HH-----------------------HHHHHHHh----CCCCCChhhHHHHHHHHHhcC
Q 038364 465 -----WNSMISSYTGLGYVDV-AW-----------------------SLFNKMNS----SRIQPDIITWNCLLSGHFTHG 511 (1076)
Q Consensus 465 -----~n~lI~~~~~~g~~~~-A~-----------------------~lf~~M~~----~g~~pd~~ty~~Li~~~~~~g 511 (1076)
-.-||....+++.+.. |. ++.++-.. ....|+ --...+.+|...|
T Consensus 922 ~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~Pe--eVs~~vKaf~~ag 999 (1630)
T 1xi4_A 922 ERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPE--EVSVTVKAFMTAD 999 (1630)
T ss_pred cccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHH--HhHHHHHHHHhCC
Confidence 1223333333333322 11 11111111 112222 3345677888999
Q ss_pred ChhhHHHHHHHHHhcCC--CCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 038364 512 SYQNVLTLLRGMQSLGF--RPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEV 589 (1076)
Q Consensus 512 ~~~~Al~l~~~m~~~gi--~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~l 589 (1076)
.+.+|++++++....+- .-+...-+.++.+..+. +...+.+.....- ......+...+...|.+++|..+
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999884421 00111222233333333 5555555544433 11234466778889999999999
Q ss_pred HhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchH
Q 038364 590 FDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVV 669 (1076)
Q Consensus 590 f~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ 669 (1076)
|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|.+.|.+. .|..
T Consensus 1072 YkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~s 1135 (1630)
T 1xi4_A 1072 FRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPS 1135 (1630)
T ss_pred HHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChH
Confidence 99975 33333344433 7788999999998763 5778999999999999999999999765 4788
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 038364 670 TWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYS 749 (1076)
Q Consensus 670 ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~ 749 (1076)
.|..++..+.+.|++++|.+++....+.. ++....+.+..+|++.++++....+. + .++...+..+.+.|.
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCY 1206 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHH
Confidence 89999999999999999999999877643 44444456888999998887544442 2 345566677999999
Q ss_pred hcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038364 750 KSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDS 829 (1076)
Q Consensus 750 k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~ 829 (1076)
..|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|.+..|......
T Consensus 1207 ~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred hcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 999999999999985 48999999999999999999999987 3568999999999999999999886543
Q ss_pred hhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc--CCchHHHHHHHHHhcCCC--
Q 038364 830 MSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGSCRIH--GHLEYAEIASRRLFKLEP-- 903 (1076)
Q Consensus 830 m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a~~~~--g~~e~A~~~~~~l~~l~P-- 903 (1076)
+..+++.+..++..|.+.|.++||+.+++.. +.+|. ...|.-|...+.+. ++..++.+.|..-.++.|
T Consensus 1276 ------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A 1276 ------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred ------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence 3345777889999999999999999999875 44443 33676666666554 677888888888888777
Q ss_pred ---CCchhHHHHHHHHHHcCChHHHHHH
Q 038364 904 ---CNSANYNLMMNLLAMSNRWEDVERL 928 (1076)
Q Consensus 904 ---~~~~~y~~L~~~y~~~G~~~eA~~~ 928 (1076)
++...|.-++.+|.+.|+|+.|...
T Consensus 1350 r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1350 RAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6778899999999999999999864
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=7e-18 Score=198.46 Aligned_cols=330 Identities=9% Similarity=0.017 Sum_probs=219.5
Q ss_pred CcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHH
Q 038364 531 NGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISG 607 (1076)
Q Consensus 531 d~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~ 607 (1076)
+...+..+...+.+.|++++|..++..+++... .+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 345677788889999999999999999998743 3688899999999999999999999998764 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCc----cchhhhhhh------------hhhcCChhHHHHHHHHhHhcCCCCchHHH
Q 038364 608 YCFKGLFVNAKKMLNQMEEEEIKPDL----VSWNSLVSG------------YSIWGQSKEALVIIHHMKNSGIYPNVVTW 671 (1076)
Q Consensus 608 ~~~~g~~~~A~~lf~~M~~~g~~pd~----~t~~~Li~~------------y~k~g~~~~A~~lf~~m~~~gi~pd~~ty 671 (1076)
|.+.|++++|.+.|+++.+.. |+. ..+..+... |.+.|++++|...|+++.+.. +.+...|
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 999999999999999998753 443 556656444 555566666666666655431 2244555
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKS 751 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~ 751 (1076)
..+...|.+.|++++|++.|+++.+. . ..+..++..+...|.+.
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~----------------------------------~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKL--K----------------------------------NDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHH--H----------------------------------CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--C----------------------------------CCCHHHHHHHHHHHHHc
Confidence 55555555555555555555555432 1 12334444455555555
Q ss_pred CCHHHHHHHHHhcCC---CChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q 038364 752 GNLKSAREVFRKSAN---KTLASWNCM------------IMGFAIYGNGKEAILLFHELLETGFQPD-----AITFTALL 811 (1076)
Q Consensus 752 G~~~~A~~vf~~m~~---~d~~s~n~l------------i~~~~~~g~~~~Al~l~~~M~~~g~~Pd-----~~t~~~ll 811 (1076)
|++++|.+.|+++.+ .+...|..+ ...+...|++++|+..|+++.+ ..|+ ...+..+.
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~ 302 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERIC 302 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHH
Confidence 555555555544431 122233322 6667777777777777777776 3454 23556666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-------
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD-ATIWGALLGS------- 881 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~~~~~Ll~a------- 881 (1076)
..+.+.|++++|.++++.+.+. .| +...|..+..+|.+.|++++|.+.++++ ...|+ ..+|..+..+
T Consensus 303 ~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 303 HCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence 6677777777777777776543 23 3566777777777777777777777765 34443 4455555422
Q ss_pred -----HHHcC-----CchHHHHHHHH-HhcCCCCC
Q 038364 882 -----CRIHG-----HLEYAEIASRR-LFKLEPCN 905 (1076)
Q Consensus 882 -----~~~~g-----~~e~A~~~~~~-l~~l~P~~ 905 (1076)
|...| +.+++.+.+++ .++..|++
T Consensus 380 ~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 33334 56777888886 67788875
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=9.1e-16 Score=173.51 Aligned_cols=310 Identities=11% Similarity=0.057 Sum_probs=184.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHH
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGS 678 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~ 678 (1076)
..|..+...+.+.|++++|++.|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344444455555555555555555554432 1123444555555555555555555555554431 11334555555555
Q ss_pred hcCCChhHHHHHHHHHhhcCCCC---C-hhhHHHH------------HHHHhcCCCchhHHHHHHHHHHcCCCCChhhHH
Q 038364 679 LQNENYRESLKFFIQMQQEDIKP---N-STTMSSL------------LQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 679 ~~~g~~~eAl~l~~~m~~~gi~p---d-~~t~~~l------------L~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
.+.|++++|.+.|+++.+. .| + ...+..+ ...+...|++++|...+..+.+. .+.+...+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCchHHHH
Confidence 5556666666655555542 33 1 1222222 34555666666666666666654 223456666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HH----------
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAIT-FT---------- 808 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t-~~---------- 808 (1076)
.+...|.+.|++++|.+.+++..+ .+...|..+...|...|++++|+..|++..+ ..|+... +.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHH
Confidence 777777777777777777776553 3456777777777777888888887777776 3344322 21
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038364 809 --ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI-----EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALL 879 (1076)
Q Consensus 809 --~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~-----~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll 879 (1076)
.+...+...|++++|.+.++++.+. .|+. ..+..+...|.+.|++++|.+.+++. ...| +..+|..+.
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 2244466777777777777777654 2331 22445667777777777777777765 2233 566777777
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
..+...|++++|...++++++++|++...+..+..++..
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 777777788888888888777777777666666665543
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=1.3e-16 Score=181.83 Aligned_cols=380 Identities=14% Similarity=0.123 Sum_probs=175.1
Q ss_pred hcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHH
Q 038364 340 GKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIH 419 (1076)
Q Consensus 340 ~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~ 419 (1076)
-++|++++|.+.+++++. ++ +|..|..++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+
T Consensus 14 ~~~~~ld~A~~fae~~~~-~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE-PA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC-hH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 378999999999999977 54 999999999999999999999975 367889999999999999999999988
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhh
Q 038364 420 GYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIIT 499 (1076)
Q Consensus 420 ~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t 499 (1076)
....+. .+++.+.+.|+.+|.|+|+++++.++|+. |+..+|+.+...|...|++++|..+|..+ ..
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 888774 45678899999999999999999988864 77789999999999999999999999987 48
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 038364 500 WNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVK 579 (1076)
Q Consensus 500 y~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k 579 (1076)
|..++.++.+.|++++|.+.++++ .+..||..++.+|...|+++.|...... +..++.-...++..|.+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHH
Confidence 999999999999999999999999 4778999999999999999999543332 22333335578999999
Q ss_pred CCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCC------CccchhhhhhhhhhcCC
Q 038364 580 NDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFK--GLFVNAKKMLNQMEEEEIKP------DLVSWNSLVSGYSIWGQ 648 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~--g~~~~A~~lf~~M~~~g~~p------d~~t~~~Li~~y~k~g~ 648 (1076)
.|.+++|..+++.... .....|+-|--.|++- ++..+.+++|..- -.+.| +...|..+...|.+.++
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9999999999987764 4567888888888875 4556666666531 12222 56788899999999999
Q ss_pred hhHHHHHHHHhHhc-CC-------------CCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHh
Q 038364 649 SKEALVIIHHMKNS-GI-------------YPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCG 714 (1076)
Q Consensus 649 ~~~A~~lf~~m~~~-gi-------------~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~ 714 (1076)
++.|... |.++ .. ..+...|-..|.-|. +...+++.-+-......+. .+.++.-+.
T Consensus 298 ~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld-----~~r~v~~~~ 367 (449)
T 1b89_A 298 YDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFS 367 (449)
T ss_dssp HHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCC-----HHHHHHHHH
T ss_pred HHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccC-----cHHHHHHHH
Confidence 9988763 3332 01 123444444444444 2222222222211111111 123333445
Q ss_pred cCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 038364 715 GLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKT 768 (1076)
Q Consensus 715 ~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d 768 (1076)
+.|.+...+..+..+... .+..+-.+|-+.|....+++.-+.-.+.-..-|
T Consensus 368 ~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~si~~~~nfd 418 (449)
T 1b89_A 368 KVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTSIDAYDNFD 418 (449)
T ss_dssp HTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHCCCSC
T ss_pred HcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCcC
Confidence 555555555555444432 234444556666666666665555554443333
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=4.2e-15 Score=167.99 Aligned_cols=294 Identities=12% Similarity=-0.004 Sum_probs=244.7
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHH
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQ 711 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~ 711 (1076)
...+..+...+.+.|++++|...|+++.+.. +.+...|..+...+.+.|++++|++.|+++.+. .| +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHH
Confidence 3455667788899999999999999998752 235788999999999999999999999999874 34 5678888889
Q ss_pred HHhcCCCchhHHHHHHHHHHcCCCC----ChhhHHHH------------HHHHhhcCCHHHHHHHHHhcC---CCChHHH
Q 038364 712 TCGGLGLLQNGKEIHCLCLKNGFIK----DAYVATGL------------IDMYSKSGNLKSAREVFRKSA---NKTLASW 772 (1076)
Q Consensus 712 a~~~~g~~~~a~~i~~~~~~~g~~~----d~~~~~~L------------i~~y~k~G~~~~A~~vf~~m~---~~d~~s~ 772 (1076)
.+...|++++|...+..+.+. .| +...+..+ ...|...|++++|.+.|+++. ..+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 999999999999999999884 34 34444444 688999999999999999865 3467789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc-ccHH-------
Q 038364 773 NCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI-EHYS------- 844 (1076)
Q Consensus 773 n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~-~~y~------- 844 (1076)
..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.|+...+. .|+. ..+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHH
Confidence 999999999999999999999999842 335567888888899999999999999998764 3442 2222
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 845 -----CMVDLLGKAGYLDEAWDFIRTM-PFKPD-AT----IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 845 -----~li~~l~r~G~l~eA~~l~~~m-~~~pd-~~----~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
.+...+.+.|++++|.+.+++. ...|+ .. .|..+...+...|++++|...++++++++|+++..+..++
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3367799999999999999986 23343 32 3555778899999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhC
Q 038364 914 NLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 914 ~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.+|.+.|++++|.+.+++..+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999998653
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.1e-15 Score=174.12 Aligned_cols=292 Identities=11% Similarity=0.080 Sum_probs=122.0
Q ss_pred HccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhhHHHHH
Q 038364 238 LEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLCTKLMAFWLGVEVH 317 (1076)
Q Consensus 238 ~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 317 (1076)
-++|++++|...|+++++|+ .|+.+..++.+.|++ ++|++.|.+. +|..+|..++.+|...|++++|...+
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~-~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMV-KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCH-HHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37889999999999997775 999999999999999 9999999763 68889999999999999999999988
Q ss_pred HHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 038364 318 ASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISR 397 (1076)
Q Consensus 318 ~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~ 397 (1076)
..+.+. .+++.+.+.|+.+|.|+|+++++.++|+. ++..+|+.+...|...|++++|..+|..+ .
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC----C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 888774 46688999999999999999999988864 66679999999999999999999999977 2
Q ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 038364 398 TIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGY 477 (1076)
Q Consensus 398 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~ 477 (1076)
.|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .+..-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 6777777777888877777777665 367777777777777777777766655543 333334457777777777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--CChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHH
Q 038364 478 VDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTH--GSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESH 555 (1076)
Q Consensus 478 ~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~--g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~ 555 (1076)
+++|+.+++...... +--...|+-|--.|++- ++..+.+++|. ...-...+|++|.+
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---------~~ini~k~~~~~~~----------- 281 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---------SRVNIPKVLRAAEQ----------- 281 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---------TTSCHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------HHhcCcHHHHHHHH-----------
Confidence 777777777766544 22455666665555554 24444444442 22334556666653
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 038364 556 GYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDN 592 (1076)
Q Consensus 556 ~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~ 592 (1076)
..+|..++-.|.+-++++.|....-+
T Consensus 282 -----------~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 282 -----------AHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp -----------TTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 34567788888888888888765433
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.69 E-value=7.8e-15 Score=163.99 Aligned_cols=286 Identities=12% Similarity=0.073 Sum_probs=186.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHH
Q 038364 597 NIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLIS 676 (1076)
Q Consensus 597 d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~ 676 (1076)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+.+.|++++|..+|+++.+.. +.+...|..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34445555555555566666666666655442 1223333444555555555555555555555421 123344444555
Q ss_pred HHhcCC-ChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 038364 677 GSLQNE-NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 677 ~~~~~g-~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~ 755 (1076)
.+...| ++++|.+.|++.. +.. +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~-----------------------------------~~~-~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKAT-----------------------------------TLE-KTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHH-----------------------------------TTC-TTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHH-----------------------------------HhC-CccHHHHHHHHHHHHHccCHH
Confidence 555555 4555555555544 321 123445666677777777777
Q ss_pred HHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 756 SAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 756 ~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
+|.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 77777766542 345666677777888888888888888877632 23345677777778888888888888877765
Q ss_pred cCC-------CCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 833 DYN-------IIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 833 ~~g-------~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
... .......+..+...|.+.|++++|.+.+++. . .+.+..+|..+...+...|++++|...++++++++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 311 1233568888899999999999999988886 2 234567888999999999999999999999999999
Q ss_pred CCchhHHHHHHHHH-HcCC
Q 038364 904 CNSANYNLMMNLLA-MSNR 921 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~-~~G~ 921 (1076)
+++..+..++..|. ..|+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC
T ss_pred CchHHHHHHHHHHHHHhCc
Confidence 99999999999884 4454
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=1e-13 Score=167.28 Aligned_cols=209 Identities=7% Similarity=0.016 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHhh-------cCCHH-------HHHHHHHhcCC---C-ChHHHHHHHHHHHHc
Q 038364 721 NGKEIHCLCLKNGFIKDAYVATGLIDMYSK-------SGNLK-------SAREVFRKSAN---K-TLASWNCMIMGFAIY 782 (1076)
Q Consensus 721 ~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k-------~G~~~-------~A~~vf~~m~~---~-d~~s~n~li~~~~~~ 782 (1076)
.+..+++.+++. ...+..+|..++..+.+ .|+++ +|.++|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 556677777774 33467788888888875 68877 89999998764 3 567899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHH-HHhcCCHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDA--ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL-LGKAGYLDE 858 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~-l~r~G~l~e 858 (1076)
|+.++|..+|+++.+ +.|+. ..|......+.+.|++++|+++|++..+. .|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 56753 47888888888899999999999998764 333 2333332222 346899999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch----hHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 859 AWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA----NYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 859 A~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~----~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
|.++|++. ...| +...|..++......|+.+.|..+++++++..|.++. .+...+......|+.+++.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999876 2334 5789999999999999999999999999998776655 6767788888899999999999988
Q ss_pred HhC
Q 038364 933 DEV 935 (1076)
Q Consensus 933 ~~~ 935 (1076)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 21
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=202.02 Aligned_cols=115 Identities=16% Similarity=0.218 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHH
Q 038364 599 VAWNSLISGYCFKGLFVNAKKMLNQME---EEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLI 675 (1076)
Q Consensus 599 ~~~n~lI~~~~~~g~~~~A~~lf~~M~---~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI 675 (1076)
.+||+||++||+.|+.++|.++|.+|. ..|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||++|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 456666666666666666666665554 23566666666666666666666666666666666666666666666666
Q ss_pred HHHhcCCCh-hHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 038364 676 SGSLQNENY-RESLKFFIQMQQEDIKPNSTTMSSLLQTC 713 (1076)
Q Consensus 676 ~~~~~~g~~-~eAl~l~~~m~~~gi~pd~~t~~~lL~a~ 713 (1076)
+++++.|+. ++|.++|++|.+.|+.||.+||++++.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666653 55666666666666666666666665544
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.66 E-value=1.3e-14 Score=162.24 Aligned_cols=264 Identities=12% Similarity=0.048 Sum_probs=214.3
Q ss_pred CCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHH
Q 038364 665 YPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGL 744 (1076)
Q Consensus 665 ~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~L 744 (1076)
..+...+..+...+...|++++|+++|+++.+.. +.+...+..+..++...|++++|...+..+++. .+.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL-YPSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCCHHHHHHH
Confidence 3455556666677777777777777777776532 223445555666677778888888887777774 23356778889
Q ss_pred HHHHhhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 038364 745 IDMYSKSG-NLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGL 819 (1076)
Q Consensus 745 i~~y~k~G-~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~ 819 (1076)
...|...| ++++|.+.|++..+ .+...|..+...+...|++++|+..|+++.+. .|+ ...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhh
Confidence 99999999 99999999998764 35678999999999999999999999999984 344 4567778888999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHHcCCc
Q 038364 820 VEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-F----------KPDATIWGALLGSCRIHGHL 888 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~----------~pd~~~~~~Ll~a~~~~g~~ 888 (1076)
+++|.++++++.+. .+.+...+..+...|.+.|++++|.+.+++.. . +.+..+|..+...+...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999753 23346788999999999999999999998762 1 34467899999999999999
Q ss_pred hHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 889 EYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 889 e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++|+..+++++++.|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999998754
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=5.7e-17 Score=197.40 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=126.2
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHhc-------CCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhh
Q 038364 427 LESNLSVCNCLISMYSRNNKLELATRVFDSM-------KDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIIT 499 (1076)
Q Consensus 427 ~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m-------~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t 499 (1076)
...-..+||+||++|||+|++++|.++|++| ..||++|||+||.||++.|++++|.++|++|.+.|+.||++|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3344578999999999999999999999776 368999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCh-hhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCc------hhHHHH
Q 038364 500 WNCLLSGHFTHGSY-QNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYD------LYVGTS 572 (1076)
Q Consensus 500 y~~Li~~~~~~g~~-~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d------~~v~~a 572 (1076)
||+||.++++.|+. ++|.++|++|.+.|+.||.+||+++++++.+.+-++..+.+ ..++.|+ +.+..-
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHH
Confidence 99999999999985 78999999999999999999999998776655433333222 2344444 455666
Q ss_pred HHHHHHhCC
Q 038364 573 LMDMYVKND 581 (1076)
Q Consensus 573 Li~~y~k~g 581 (1076)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 788888766
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.65 E-value=3.5e-13 Score=160.86 Aligned_cols=352 Identities=13% Similarity=-0.033 Sum_probs=238.5
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHh----cCChHH
Q 038364 546 RLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVK----NDCLQNAQEVFDNMKN-RNIVAWNSLISGYCF----KGLFVN 616 (1076)
Q Consensus 546 g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k----~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~----~g~~~~ 616 (1076)
+++++|...+....+.| +...+..|-.+|.. .++.++|.+.|++..+ .+...+..|-..|.. .+++++
T Consensus 57 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 33444444444433332 23344445555555 5566666666655433 344555555555555 556666
Q ss_pred HHHHHHHHHHcCCCCCccchhhhhhhhhh----cCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhc----CCChhHHH
Q 038364 617 AKKMLNQMEEEEIKPDLVSWNSLVSGYSI----WGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQ----NENYRESL 688 (1076)
Q Consensus 617 A~~lf~~M~~~g~~pd~~t~~~Li~~y~k----~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~----~g~~~eAl 688 (1076)
|++.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.+ .++.++|+
T Consensus 134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 666666666554 34455555555555 567777777777766643 55666666666666 67777777
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHhc----CCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh----cCCHHHHHHH
Q 038364 689 KFFIQMQQEDIKPNSTTMSSLLQTCGG----LGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK----SGNLKSAREV 760 (1076)
Q Consensus 689 ~l~~~m~~~gi~pd~~t~~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~v 760 (1076)
+.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 7777776543 34445555555543 667777777777776653 34556667777777 8889999999
Q ss_pred HHhcCC-CChHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhh
Q 038364 761 FRKSAN-KTLASWNCMIMGFAIY-----GNGKEAILLFHELLETGFQPDAITFTALLAACKNSG---LVEEGWKYFDSMS 831 (1076)
Q Consensus 761 f~~m~~-~d~~s~n~li~~~~~~-----g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g---~~~eA~~~~~~m~ 831 (1076)
|++..+ .+...+..+...|... ++.++|+.+|++..+.| +...+..+-..+...| +.++|.++|++..
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 987765 4566777788888877 89999999999998865 3445555666666656 7889999999887
Q ss_pred hcCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCC
Q 038364 832 TDYNIIPTIEHYSCMVDLLGK----AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 832 ~~~g~~p~~~~y~~li~~l~r----~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P 903 (1076)
+. .++..+..+..+|.. .++.++|.+++++.-...+...+..|...+.. .+|.++|...++++.+.+|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 64 356788888899988 89999999999887433467788888888888 8999999999999999885
Q ss_pred C---CchhHHHHHHHHHHc
Q 038364 904 C---NSANYNLMMNLLAMS 919 (1076)
Q Consensus 904 ~---~~~~y~~L~~~y~~~ 919 (1076)
+ ++.....|+.++.+.
T Consensus 435 ~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CHHHHHHHHHHHTTSCHHH
T ss_pred CCcCCHHHHHHHHhcCHhH
Confidence 4 666777777766543
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=3.3e-13 Score=162.81 Aligned_cols=411 Identities=13% Similarity=0.112 Sum_probs=256.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 038364 430 NLSVCNCLISMYSRNNKLELATRVFDSMKD--H-NLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSG 506 (1076)
Q Consensus 430 d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~--~-d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~ 506 (1076)
|...|..++. +.+.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|++..... |+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 5666777776 4667777777777777643 2 44467777777777777777777777776653 455566665542
Q ss_pred H-HhcCChhhHHH----HHHHHHh-cCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-
Q 038364 507 H-FTHGSYQNVLT----LLRGMQS-LGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVK- 579 (1076)
Q Consensus 507 ~-~~~g~~~~Al~----l~~~m~~-~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k- 579 (1076)
. ...|+.++|.+ +|++... .|..|+ +..+|...+....+
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~----------------------------------~~~~w~~~~~~~~~~ 134 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIM----------------------------------SYQIWVDYINFLKGV 134 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT----------------------------------CHHHHHHHHHHHHHS
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcc----------------------------------cHHHHHHHHHHHhcC
Confidence 2 34455555544 3433332 132222 22334444433332
Q ss_pred --------CCCHHHHHHHHhhcCC-CC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcC
Q 038364 580 --------NDCLQNAQEVFDNMKN-RN---IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWG 647 (1076)
Q Consensus 580 --------~g~~~~A~~lf~~m~~-~d---~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g 647 (1076)
.|+++.|+.+|++... |+ ...|..........|. ..+. .++. .+.+
T Consensus 135 ~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~ 192 (530)
T 2ooe_A 135 EAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSR 192 (530)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHH
T ss_pred CCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhH
Confidence 4566666666665543 21 1122221111000000 0000 0000 0123
Q ss_pred ChhHHHHHHHHhH------hcC---CCCc--------hHHHHHHHHHHhcC----CCh----hHHHHHHHHHhhcCCCCC
Q 038364 648 QSKEALVIIHHMK------NSG---IYPN--------VVTWTSLISGSLQN----ENY----RESLKFFIQMQQEDIKPN 702 (1076)
Q Consensus 648 ~~~~A~~lf~~m~------~~g---i~pd--------~~ty~~LI~~~~~~----g~~----~eAl~l~~~m~~~gi~pd 702 (1076)
+++.|..++..+. +.. +.|+ ...|...+.-...+ ++. ++|..+|++.... .+-+
T Consensus 193 ~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~ 271 (530)
T 2ooe_A 193 DYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHH 271 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCC
Confidence 3444544444321 110 1222 24555555333222 222 3677788887763 2234
Q ss_pred hhhHHHHHHHHhc-------CCCch-------hHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--
Q 038364 703 STTMSSLLQTCGG-------LGLLQ-------NGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-- 766 (1076)
Q Consensus 703 ~~t~~~lL~a~~~-------~g~~~-------~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 766 (1076)
...|......+.. .|+++ +|..+++..++.-.+.+...+..++..+.+.|++++|.++|++..+
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 5667666666654 68877 7888888887632334578888999999999999999999997653
Q ss_pred C-Ch-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCccc
Q 038364 767 K-TL-ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAA-CKNSGLVEEGWKYFDSMSTDYNIIPTIEH 842 (1076)
Q Consensus 767 ~-d~-~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a-~~~~g~~~eA~~~~~~m~~~~g~~p~~~~ 842 (1076)
+ +. ..|..++..+.+.|+.++|.++|++..+. .|+ ...+...... +...|+.++|..+|+...+.. +.++..
T Consensus 352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~ 427 (530)
T 2ooe_A 352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEY 427 (530)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHH
T ss_pred ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHH
Confidence 3 33 48999999999999999999999999874 343 2233222222 336899999999999987652 224678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM----PFKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m----~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.-...+|+.+.+..+.+++.+..|+
T Consensus 428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 428 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999999986 23333 558999999999999999999999999998885
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=5.2e-15 Score=168.66 Aligned_cols=300 Identities=13% Similarity=-0.005 Sum_probs=183.1
Q ss_pred HHHhcCChHHHHH-HHHHHHHcCC-CC--CccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCC
Q 038364 607 GYCFKGLFVNAKK-MLNQMEEEEI-KP--DLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNE 682 (1076)
Q Consensus 607 ~~~~~g~~~~A~~-lf~~M~~~g~-~p--d~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g 682 (1076)
.+...|++++|++ .|++...... .| +...+..+...|.+.|++++|...|+++.+.. +.+...|..+...|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444555666655 5554332210 01 23344555555556666666666666655431 223445555555555556
Q ss_pred ChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCCh-hhHHHHHHHHhhcCCHHHHHHHH
Q 038364 683 NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDA-YVATGLIDMYSKSGNLKSAREVF 761 (1076)
Q Consensus 683 ~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~-~~~~~Li~~y~k~G~~~~A~~vf 761 (1076)
++++|++.|+++.+.. +.+..++..+...+...|++++|...+..+++.. |+. ..+..+ +.....
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~---- 178 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-------EEGAGG---- 178 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH-------HHHhhh----
Confidence 6666665555555431 1133344444444444444444444444444421 111 000000 000000
Q ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 038364 762 RKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD---AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP 838 (1076)
Q Consensus 762 ~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd---~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p 838 (1076)
......+.. +..+...|++++|+..|+++.+. .|+ ..++..+...+...|++++|.+.|+++.+. .|
T Consensus 179 ----~~~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~ 248 (368)
T 1fch_A 179 ----AGLGPSKRI-LGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RP 248 (368)
T ss_dssp -----------CT-THHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT
T ss_pred ----hcccHHHHH-HHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cc
Confidence 000001112 33333888999999999999873 454 678888888899999999999999998764 34
Q ss_pred -CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC----------
Q 038364 839 -TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---------- 905 (1076)
Q Consensus 839 -~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---------- 905 (1076)
+...|..++..|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...+++++++.|++
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 4678889999999999999999999886 23 3457789999999999999999999999999998887
Q ss_pred -chhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 906 -SANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 906 -~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
...|..++.+|...|++++|..+.++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 78899999999999999999988764
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=1.1e-12 Score=156.67 Aligned_cols=350 Identities=12% Similarity=0.017 Sum_probs=294.2
Q ss_pred chhHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCccch
Q 038364 566 DLYVGTSLMDMYVK----NDCLQNAQEVFDNMKN-RNIVAWNSLISGYCF----KGLFVNAKKMLNQMEEEEIKPDLVSW 636 (1076)
Q Consensus 566 d~~v~~aLi~~y~k----~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~----~g~~~~A~~lf~~M~~~g~~pd~~t~ 636 (1076)
+......|-.+|.. .+++++|...|++..+ .+...+..|-..|.. .++.++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55667777788888 8999999999987654 577888889999998 899999999999998875 56677
Q ss_pred hhhhhhhhh----cCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhc----CCChhHHHHHHHHHhhcCCCCChhhHHH
Q 038364 637 NSLVSGYSI----WGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQ----NENYRESLKFFIQMQQEDIKPNSTTMSS 708 (1076)
Q Consensus 637 ~~Li~~y~k----~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~----~g~~~eAl~l~~~m~~~gi~pd~~t~~~ 708 (1076)
..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++|++.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 778888887 789999999999998865 56778888888887 789999999999998764 5667777
Q ss_pred HHHHHhc----CCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHH
Q 038364 709 LLQTCGG----LGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK----SGNLKSAREVFRKSAN-KTLASWNCMIMGF 779 (1076)
Q Consensus 709 lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~vf~~m~~-~d~~s~n~li~~~ 779 (1076)
+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...|
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777776 899999999999998865 56677888888986 8999999999998765 4667788888888
Q ss_pred HH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 780 AI----YGNGKEAILLFHELLETGFQPDAITFTALLAACKNS-----GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 780 ~~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~-----g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
.. .++.++|+++|++..+.| +...+..+...+... ++.++|.+.|++..+. .+...+..+..+|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHH
Confidence 88 899999999999998765 444555666667776 8999999999998764 2456778888888
Q ss_pred HhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH----c
Q 038364 851 GKAG---YLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM----S 919 (1076)
Q Consensus 851 ~r~G---~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~----~ 919 (1076)
.+.| +.++|.+++++.-...+...|..|...+.. .++.++|...++++.+.. ++..+..|+.+|.. .
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCC
Confidence 8867 889999999987434678899999999988 899999999999998864 57899999999999 8
Q ss_pred CChHHHHHHHHHHHhCC
Q 038364 920 NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 920 G~~~eA~~~~~~m~~~g 936 (1076)
++.++|.+.+++..+.+
T Consensus 417 ~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 99999999999998876
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=2e-13 Score=151.21 Aligned_cols=270 Identities=11% Similarity=0.026 Sum_probs=206.5
Q ss_pred hhhhcCChhHHHHHHHHhHhcCCCCc--hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCc
Q 038364 642 GYSIWGQSKEALVIIHHMKNSGIYPN--VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLL 719 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~~gi~pd--~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~ 719 (1076)
-....|+++.|...++..... .|+ ......+..+|...|++++|+..++.. -.|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 344568888888877766443 333 345556677888888888888766442 355667777777888888888
Q ss_pred hhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 038364 720 QNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLET 798 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~ 798 (1076)
+.+.+.++.+++.+..| +...+..+..+|.+.|++++|.+.+++ ..+...|..++..|.+.|+.++|++.|+++.+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 88888888888766544 456677788999999999999999998 567788999999999999999999999999984
Q ss_pred CCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHH
Q 038364 799 GFQPDAITF---TALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DAT 873 (1076)
Q Consensus 799 g~~Pd~~t~---~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~ 873 (1076)
.|+.... .+.+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|++.+++. ...| +..
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 5775422 12223344568999999999999875 3456778899999999999999999999886 3334 667
Q ss_pred HHHHHHHHHHHcCCchH-HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHH
Q 038364 874 IWGALLGSCRIHGHLEY-AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~-A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~ 927 (1076)
+|..++..+...|+.++ +..+++++++++|+++.. .++..+.+.++++..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 89999999999999875 578899999999998643 455666666666654
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.57 E-value=1.4e-13 Score=156.84 Aligned_cols=278 Identities=14% Similarity=0.029 Sum_probs=148.3
Q ss_pred CCChHHHHH-HHHHHHhCCC---CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHH
Q 038364 475 LGYVDVAWS-LFNKMNSSRI---QPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKY 550 (1076)
Q Consensus 475 ~g~~~~A~~-lf~~M~~~g~---~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~ 550 (1076)
.|++++|++ .|++...... ..+...|..+...+.+.|++++|+..|+++.+.. |+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~------------------- 96 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PK------------------- 96 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TT-------------------
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC-------------------
Confidence 355666665 5554433211 1123445555555555555555555555555443 22
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038364 551 GRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEE 627 (1076)
Q Consensus 551 a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~ 627 (1076)
+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+.
T Consensus 97 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 97 ---------------HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---------------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 233445555566666666666666665432 35566777777777777777777777777665
Q ss_pred CCCCCccc-hhh---------------hhhhhhhcCChhHHHHHHHHhHhcCCC-CchHHHHHHHHHHhcCCChhHHHHH
Q 038364 628 EIKPDLVS-WNS---------------LVSGYSIWGQSKEALVIIHHMKNSGIY-PNVVTWTSLISGSLQNENYRESLKF 690 (1076)
Q Consensus 628 g~~pd~~t-~~~---------------Li~~y~k~g~~~~A~~lf~~m~~~gi~-pd~~ty~~LI~~~~~~g~~~eAl~l 690 (1076)
. |+... +.. .+..+...|++++|...|+++.+.... ++...|..+...|.+.|++++|++.
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 162 T--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp S--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3 22221 111 233333667777777777766653211 1355666666666666666666666
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CC
Q 038364 691 FIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NK 767 (1076)
Q Consensus 691 ~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~ 767 (1076)
|+++... .|+ +...+..+...|.+.|++++|.+.|++.. ..
T Consensus 240 ~~~al~~--~~~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 240 FTAALSV--RPN----------------------------------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHh--CcC----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6666542 221 23344445555555555555555555433 22
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD------------AITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd------------~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
+...|..+...|.+.|++++|+..|+++.+. .|+ ..+|..+..++...|+.++|..++.
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 3445556666666666666666666665542 121 3556666666666677666666554
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.57 E-value=6.8e-14 Score=159.63 Aligned_cols=258 Identities=13% Similarity=0.012 Sum_probs=175.7
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQT 712 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a 712 (1076)
...+..+...+.+.|++++|.++|+++.+.. +.+...|..+...|.+.|++++|++.|+++.+. .|+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~---------- 131 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPN---------- 131 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC----------
Confidence 3445666666666677777777776666532 224556666666666666666666666666542 221
Q ss_pred HhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCC-------------hHHHHHHHHHH
Q 038364 713 CGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKT-------------LASWNCMIMGF 779 (1076)
Q Consensus 713 ~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d-------------~~s~n~li~~~ 779 (1076)
+...+..+...|.+.|++++|.+.|+++.+.+ ...++.+...+
T Consensus 132 ------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 132 ------------------------NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred ------------------------CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 23344445555555555555555555443211 12334457778
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCH
Q 038364 780 AIYGNGKEAILLFHELLETGFQP---DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYL 856 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~P---d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l 856 (1076)
...|++++|+..|+++.+. .| +..++..+...+...|++++|.++|+++.+. .+.+...|..+..+|.+.|++
T Consensus 188 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred hhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 8888888888888888874 44 4667888888888889999999988888764 123466888889999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC------------CchhHHHHHHHHHHcCCh
Q 038364 857 DEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC------------NSANYNLMMNLLAMSNRW 922 (1076)
Q Consensus 857 ~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~------------~~~~y~~L~~~y~~~G~~ 922 (1076)
++|.+.++++ ...| +..+|..+..+|...|++++|...+++++++.|+ +...+..|+.++...|+.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999998886 3334 4778999999999999999999999999998876 357799999999999999
Q ss_pred HHHHHHHHH
Q 038364 923 EDVERLRHS 931 (1076)
Q Consensus 923 ~eA~~~~~~ 931 (1076)
+.|.++.++
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999887654
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=6.8e-13 Score=156.93 Aligned_cols=361 Identities=11% Similarity=0.004 Sum_probs=219.8
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhhcCC------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C--
Q 038364 567 LYVGTSLMDMYVKNDCLQNAQEVFDNMKN------------RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEE---I-- 629 (1076)
Q Consensus 567 ~~v~~aLi~~y~k~g~~~~A~~lf~~m~~------------~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g---~-- 629 (1076)
...||.|...|...|+.++|.+.|++..+ ...++|+.+...|...|++++|...+++..+.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 45677777777777777777777765321 245678888888888888888888887765421 0
Q ss_pred -CCC-ccchhhhhhhhhhc--CChhHHHHHHHHhHhcCCCCc-hHHHHHHHHH---HhcCCChhHHHHHHHHHhhcCCCC
Q 038364 630 -KPD-LVSWNSLVSGYSIW--GQSKEALVIIHHMKNSGIYPN-VVTWTSLISG---SLQNENYRESLKFFIQMQQEDIKP 701 (1076)
Q Consensus 630 -~pd-~~t~~~Li~~y~k~--g~~~~A~~lf~~m~~~gi~pd-~~ty~~LI~~---~~~~g~~~eAl~l~~~m~~~gi~p 701 (1076)
.++ ..++..+..++.+. +++++|.+.|++..+. .|+ ...+..+... +...++.++|++.+++..+. .|
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p 206 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NP 206 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CC
Confidence 111 12333333344443 4688888888887764 343 3444444433 34567778888888887653 34
Q ss_pred C-hhhHHHHHHHHh----cCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHH
Q 038364 702 N-STTMSSLLQTCG----GLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWN 773 (1076)
Q Consensus 702 d-~~t~~~lL~a~~----~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n 773 (1076)
+ ..++..+...+. ..++.++|.+.+..+.+. ...+..++..+...|.+.|++++|.+.|++..+ .+..+|.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 3 344444443333 346777888888887774 234566777888888999999999888887653 3455666
Q ss_pred HHHHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 774 CMIMGFAIY-------------------GNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 774 ~li~~~~~~-------------------g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
.+...|... +..++|+..|++..+ ..|+. .++..+...+...|++++|.+.|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 665555332 335677778887776 34443 45667777888899999999999887653
Q ss_pred CCCCCCcc----cHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch
Q 038364 834 YNIIPTIE----HYSCMVD-LLGKAGYLDEAWDFIRTM-PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 834 ~g~~p~~~----~y~~li~-~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
.|+.. .+..+.. .+.+.|+.++|++.+++. .+.|+...+...+ +.+..++++.++.+|+++.
T Consensus 364 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 364 ---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK---------DKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTT
T ss_pred ---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHH
Confidence 23322 2233333 234678899999888875 4566655443333 3455677788888999999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEE
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWI 946 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi 946 (1076)
+|..|+.+|...|++++|.+.+++..+.|-..+...+|+
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999988774444466664
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.57 E-value=4.8e-14 Score=160.94 Aligned_cols=231 Identities=10% Similarity=-0.024 Sum_probs=189.6
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHH
Q 038364 703 STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGF 779 (1076)
Q Consensus 703 ~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~ 779 (1076)
...+..+...+...|++++|...+..+++. .+.+...+..+...|.+.|++++|.+.|++..+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 345667777777778888888888777774 234577888999999999999999999998763 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 780 AIYGNGKEAILLFHELLETGFQPDAI-----------TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~Pd~~-----------t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
...|++++|+..|+++.+ ..|+.. .+..+...+...|++++|.++|+++.+...-.++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998 445543 2233466788999999999999999876333335778999999
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
.|.+.|++++|.+.+++. . .+.+..+|..+..++...|++++|+..++++++++|+++..+..++.+|.+.|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 2 34467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 038364 927 RLRHSMDEVG 936 (1076)
Q Consensus 927 ~~~~~m~~~g 936 (1076)
+.++++.+..
T Consensus 302 ~~~~~al~~~ 311 (365)
T 4eqf_A 302 SNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999987643
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.54 E-value=1.4e-13 Score=153.49 Aligned_cols=276 Identities=13% Similarity=-0.012 Sum_probs=179.7
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQT 712 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a 712 (1076)
...+..+...+.+.|++++|..+|+++.+.. +.+...|..+...+.+.|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3444555666667777777777777766532 2245566666666666777777777666665531 1233344444444
Q ss_pred HhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHH-HH-HHHHcCCHHHHHH
Q 038364 713 CGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCM-IM-GFAIYGNGKEAIL 790 (1076)
Q Consensus 713 ~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~l-i~-~~~~~g~~~~Al~ 790 (1076)
+...|++++|...+..+.+... .+...+..+.... ++......+ .. .+...|++++|+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 4455555555555544444211 1111111110000 000000011 12 2666777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-
Q 038364 791 LFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF- 868 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~- 868 (1076)
.++++.+.. +.+...+..+...+...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.++++ ..
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 888887742 234567777777888888888888888888754 1234667888888999999999999988886 22
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC------------CchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 869 KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC------------NSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~------------~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+.+..+|..+...+...|++++|...+++++++.|+ ++..+..++.+|.+.|++++|.+++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345778999999999999999999999999999998 6888999999999999999999988754
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.53 E-value=2.9e-13 Score=149.91 Aligned_cols=246 Identities=8% Similarity=0.021 Sum_probs=201.3
Q ss_pred HHHhcCCChhHHHHHHHHHhhcCCCCCh--hhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 038364 676 SGSLQNENYRESLKFFIQMQQEDIKPNS--TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGN 753 (1076)
Q Consensus 676 ~~~~~~g~~~eAl~l~~~m~~~gi~pd~--~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~ 753 (1076)
.-....|++.+|++.+++... ..|+. .....+..++...|+++.+...++. .-.|+...+..+...|.+.|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 445668999999999988754 34543 3556677899999999988875533 234567788889999999999
Q ss_pred HHHHHHHHHhcC----CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 754 LKSAREVFRKSA----NK-TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 754 ~~~A~~vf~~m~----~~-d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
.++|.+.++++. .| +...|..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999864 23 456778888999999999999999987 4566788888889999999999999999
Q ss_pred HhhhcCCCCCCccc---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 829 SMSTDYNIIPTIEH---YSCMVDLLGKAGYLDEAWDFIRTM--PFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 829 ~m~~~~g~~p~~~~---y~~li~~l~r~G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
.+.+. .|+... ..+++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++++|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99875 365431 123445566679999999999998 2456788999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Q 038364 904 CNSANYNLMMNLLAMSNRWED-VERLRHSMDEVG 936 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~~~G~~~e-A~~~~~~m~~~g 936 (1076)
+++.++..++.++...|++++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987 578988886544
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.50 E-value=1.4e-12 Score=145.38 Aligned_cols=255 Identities=13% Similarity=0.014 Sum_probs=158.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 038364 435 NCLISMYSRNNKLELATRVFDSMK---DHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHG 511 (1076)
Q Consensus 435 n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g 511 (1076)
-.+...+.+.|++++|..+|+++. ..+...|..+...+.+.|++++|.+.|+++.+.... +..+|..+...+...|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcC
Confidence 344445555566666666555542 224455666666666666666666666666655333 5566666666666666
Q ss_pred ChhhHHHHHHHHHhcCCCCCcccHHHHH--------------HH--HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038364 512 SYQNVLTLLRGMQSLGFRPNGSSVSVVL--------------QA--VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMD 575 (1076)
Q Consensus 512 ~~~~Al~l~~~m~~~gi~pd~~t~~~ll--------------~a--~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~ 575 (1076)
++++|++.++++.+.. |+.......+ .. +...|++++|...+..+++.... +..++..+..
T Consensus 104 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 180 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGV 180 (327)
T ss_dssp CHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 6666666666666543 3322222111 22 45566777777777777665433 5566777777
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHH
Q 038364 576 MYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEA 652 (1076)
Q Consensus 576 ~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A 652 (1076)
.|.+.|++++|.+.|++..+ .+..+|..+...|...|++++|++.|++..+.. +.+..++..+...|.+.|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 77777777777777776543 356677777777777777777777777776653 22455666777777777777777
Q ss_pred HHHHHHhHhcCCCC-----------chHHHHHHHHHHhcCCChhHHHHHHHHH
Q 038364 653 LVIIHHMKNSGIYP-----------NVVTWTSLISGSLQNENYRESLKFFIQM 694 (1076)
Q Consensus 653 ~~lf~~m~~~gi~p-----------d~~ty~~LI~~~~~~g~~~eAl~l~~~m 694 (1076)
.+.|++..+..... +...|..+...+.+.|+.++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777766532111 3566777777777777777777776544
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=2.5e-11 Score=143.47 Aligned_cols=388 Identities=11% Similarity=-0.049 Sum_probs=222.7
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C--CCCC-cccHHHHHHHHHhcCchHHHHHHHHHHHHcC--
Q 038364 493 IQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSL-----G--FRPN-GSSVSVVLQAVTELRLLKYGRESHGYILRNG-- 562 (1076)
Q Consensus 493 ~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~-----g--i~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g-- 562 (1076)
.......||.|...+...|++++|++.|++..+. + ..|+ ..+|..+-..+...|++++|...+..+.+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3334678999999999999999999999987542 1 1232 3567778888888999999988888776531
Q ss_pred ----CCC-chhHHHHHHHHHHhC--CCHHHHHHHHhhcCC---CCHhHHHHHHHH---HHhcCChHHHHHHHHHHHHcCC
Q 038364 563 ----LDY-DLYVGTSLMDMYVKN--DCLQNAQEVFDNMKN---RNIVAWNSLISG---YCFKGLFVNAKKMLNQMEEEEI 629 (1076)
Q Consensus 563 ----~~~-d~~v~~aLi~~y~k~--g~~~~A~~lf~~m~~---~d~~~~n~lI~~---~~~~g~~~~A~~lf~~M~~~g~ 629 (1076)
..+ ...++..+..++.+. +++++|...|++..+ .+...+..+... +...++.++|++.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 111 234454444455544 457888888887653 344555554444 344577788888888777653
Q ss_pred CCC-ccchhhhhhhh----hhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh-
Q 038364 630 KPD-LVSWNSLVSGY----SIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS- 703 (1076)
Q Consensus 630 ~pd-~~t~~~Li~~y----~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~- 703 (1076)
|+ ...+..+...+ ...|+.++|.+++++..+.. +.+...|..+...|.+.|++++|++.+++..+. .|+.
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 281 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNA 281 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChH
Confidence 33 33444333333 34567788888888776542 235567778888888888888888888887763 4543
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHH
Q 038364 704 TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFA 780 (1076)
Q Consensus 704 ~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~ 780 (1076)
.++..+..++... +.. .... ............+..+.|...|++.. ..+...|..+...|.
T Consensus 282 ~~~~~lg~~y~~~-----~~~----~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 282 YLHCQIGCCYRAK-----VFQ----VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHH-----HHH----HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHH----hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 3344333332211 000 0000 00111111222334567777777654 345568899999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHH
Q 038364 781 IYGNGKEAILLFHELLETGFQPDAI--TFTALLA-ACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~-a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~ 857 (1076)
..|++++|++.|++..+....|... .+..+.. ...+.|+.++|.+.|++..+ +.|+...... .++
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKD 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHH
Confidence 9999999999999999854333322 1222222 24578999999999998864 4555432222 223
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 858 EAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 858 eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
.+.+++++. . .+.+..+|..|...+...|++++|+..+++++++.|.+|.++.-++
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 334444433 1 2345678999999999999999999999999999999887766554
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=3.7e-12 Score=136.53 Aligned_cols=219 Identities=10% Similarity=-0.007 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038364 668 VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDM 747 (1076)
Q Consensus 668 ~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~ 747 (1076)
...|..+...+.+.|++++|++.|++..+.. . +...+..+...
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~ 47 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAA 47 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHH
Confidence 3455555666666666666666666655443 3 34444555555
Q ss_pred HhhcCCHHHHHHHHHhcCCC------C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038364 748 YSKSGNLKSAREVFRKSANK------T----LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNS 817 (1076)
Q Consensus 748 y~k~G~~~~A~~vf~~m~~~------d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~ 817 (1076)
|...|++++|.+.|++..+. + ...|..+...|...|++++|+..|++..+ +.|+.. .+...
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~ 118 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKL 118 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHH
Confidence 55556666665555544321 1 35677778888888888888888888887 456643 34556
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIA 894 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 894 (1076)
|++++|.+.++.+... .| +...+..+...+.+.|++++|.+.+++. . .+.+..+|..+...+...|++++|+..
T Consensus 119 ~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7888898888887653 33 3567788888999999999999998886 2 344677899999999999999999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 895 SRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 895 ~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
++++++++|+++..|..++.+|.+.|++++|.+.+++..+.
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988653
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.39 E-value=1.9e-11 Score=132.58 Aligned_cols=244 Identities=10% Similarity=-0.151 Sum_probs=172.3
Q ss_pred hhhhcCChhHHHHHHHHhHhcCC---CCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCC
Q 038364 642 GYSIWGQSKEALVIIHHMKNSGI---YPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGL 718 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~~gi---~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~ 718 (1076)
.+...|++++|...|+++.+... ..+...|..+...|...|++++|++.|+++.+. .
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~------------------ 73 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--R------------------ 73 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C------------------
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--C------------------
Confidence 34455666777777776665321 113445555556666666666666666655432 1
Q ss_pred chhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHEL 795 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M 795 (1076)
+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|+..|+++
T Consensus 74 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 74 ----------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp ----------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 12345666677777788888888888876553 45678888889999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---
Q 038364 796 LETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD--- 871 (1076)
Q Consensus 796 ~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd--- 871 (1076)
.+ ..|+.......+..+...|++++|...++..... ..++... ..++..+...++.++|.+.+++. ...|+
T Consensus 138 ~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (275)
T 1xnf_A 138 YQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAE 212 (275)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHH
T ss_pred HH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccc
Confidence 87 4666665555556667779999999999877764 2233333 44777888888899999999886 33332
Q ss_pred --HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHH
Q 038364 872 --ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLR 929 (1076)
Q Consensus 872 --~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~ 929 (1076)
..+|..+...+...|++++|...++++++++|++...+ +..+...|++++|.+-+
T Consensus 213 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred cccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 56888999999999999999999999999999875444 66788889999988765
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.38 E-value=6.8e-12 Score=134.49 Aligned_cols=240 Identities=10% Similarity=-0.037 Sum_probs=160.6
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCC--CCChhhHHHHH
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDI--KPNSTTMSSLL 710 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi--~pd~~t~~~lL 710 (1076)
...|..+...+.+.|++++|...|++..+.. .+...|..+...|.+.|++++|++.+++..+... .|+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------ 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------ 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH------
Confidence 3456778889999999999999999999876 7889999999999999999999999999875311 11110
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAIL 790 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~ 790 (1076)
....++..+...|.+.|++++|.+.|++..+.+.. ...+...|+.++|+.
T Consensus 77 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 -------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELK 126 (258)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHH
Confidence 00223344445555555555555555444321100 123444556666666
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 038364 791 LFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF 868 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~ 868 (1076)
.++++.. ..|+. ..+..+...+...|++++|.+.|+++.+.. +.+...|..+...|.+.|++++|.+.+++. ..
T Consensus 127 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 127 KAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6666665 34443 345555556667777777777777766531 223556777777777777777777777765 22
Q ss_pred -CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC------CCCchhHHHHHH
Q 038364 869 -KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLE------PCNSANYNLMMN 914 (1076)
Q Consensus 869 -~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~------P~~~~~y~~L~~ 914 (1076)
+.+...|..+...+...|++++|...+++++++. |++...+..+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 3346678888888888899999999999988887 776555555443
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.37 E-value=8.4e-12 Score=131.56 Aligned_cols=192 Identities=14% Similarity=0.035 Sum_probs=153.6
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 038364 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALL 811 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll 811 (1076)
++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|+.++|+..|++..+ ..|+. ..+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 4566777888899999999999999987654 3567888899999999999999999999988 45654 5677777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038364 812 AACKNS-----------GLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDATIWGAL 878 (1076)
Q Consensus 812 ~a~~~~-----------g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~~~~~L 878 (1076)
..+... |++++|...|++..+. .|+ ...+..+..+|.+.|++++|++.+++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 788888 9999999999998764 454 668889999999999999999999886 222788899999
Q ss_pred HHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 879 LGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 879 l~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
..++...|++++|+..++++++++|+++..+..++.+|.+.|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=2.3e-11 Score=131.95 Aligned_cols=247 Identities=11% Similarity=-0.035 Sum_probs=125.5
Q ss_pred hhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCCh--hhHHHHHHHH
Q 038364 636 WNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNS--TTMSSLLQTC 713 (1076)
Q Consensus 636 ~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~--~t~~~lL~a~ 713 (1076)
+......+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|++.+++..+.+..|+. .+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344555666666666666666666531 123335666666666666666666666666552211111 1134444444
Q ss_pred hcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 038364 714 GGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFH 793 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~ 793 (1076)
...|++++|...+..+++.. ..+...|..+...|...|++++|++.|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~--------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD--------------------------------TTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHcccHHHHHHHHHHHHhcC--------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44455555555544444421 1233344444444444444444444444
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCC---HHHHHHHHHhC--
Q 038364 794 ELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGY---LDEAWDFIRTM-- 866 (1076)
Q Consensus 794 ~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~---l~eA~~l~~~m-- 866 (1076)
+..+. .|+.. .+..+...+...+++++|.+.|+.+.+. .|+ ...+..+...+...|+ .++|...+++.
T Consensus 133 ~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 133 KQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp GGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 44432 33222 2222221233333555555555554432 222 3344444444444444 44444444443
Q ss_pred --CCCCC------HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 867 --PFKPD------ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 867 --~~~pd------~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888888999999999999999999998777766666554443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.32 E-value=1.3e-10 Score=124.61 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=147.9
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAAC 814 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~ 814 (1076)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455666667777777777777776654 2345677777777888888888888888877642 22455667777778
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A 891 (1076)
...|++++|.++++++.+ .+..|+ ...+..+...|.+.|++++|.+.+++. . .+.+...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888765 234443 556777888888888888888888775 2 233567888888888889999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
...++++++..|++...+..++.+|.+.|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998888888888889999999999999999988886654
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.29 E-value=2e-10 Score=120.16 Aligned_cols=198 Identities=12% Similarity=0.030 Sum_probs=158.2
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
+...+..+...|...|++++|.+.|++..+ .+...|..+...|...|+.++|++.|+++.+.. ..+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455667788888888888888888876552 456678888888888899999999988888742 2345677777778
Q ss_pred HHhc-CCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCch
Q 038364 814 CKNS-GLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 814 ~~~~-g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e 889 (1076)
+... |++++|.++++.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++ .. +.+...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 999999999988876 233343 567788888899999999999888876 22 335778888888899999999
Q ss_pred HHHHHHHHHhcCCC-CCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 890 YAEIASRRLFKLEP-CNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P-~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+|...++++++..| ++...+..++.++...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999999 888888889999999999999999998886543
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=2.8e-10 Score=134.19 Aligned_cols=343 Identities=12% Similarity=-0.021 Sum_probs=186.7
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCC-CCHhHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCccchhhhhhhhhhcC-
Q 038364 573 LMDMYVKNDCLQNAQEVFDNMKN-RNIVAWNSLISGYCFKGLF---VNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWG- 647 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~m~~-~d~~~~n~lI~~~~~~g~~---~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g- 647 (1076)
+...+.+.|++++|.++|++..+ .+..++..+-..|...|+. ++|++.|++..+. +...+..|...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 45566677777777777776644 3445555555666666666 7777777776643 4444555555333333
Q ss_pred ----ChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChh---HHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCch
Q 038364 648 ----QSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYR---ESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQ 720 (1076)
Q Consensus 648 ----~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~---eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~ 720 (1076)
+.++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+.+....|. ......+...+...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 56677777777766542 225556666666555433 34444444443332 334444555555555555
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC---CHHHHHHHHHhcCCC---ChHHHHHHHHHHHHc----CCHHHHHH
Q 038364 721 NGKEIHCLCLKNGFIKDAYVATGLIDMYSKSG---NLKSAREVFRKSANK---TLASWNCMIMGFAIY----GNGKEAIL 790 (1076)
Q Consensus 721 ~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G---~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~----g~~~~Al~ 790 (1076)
.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+. +...+..+...|... ++.++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 55444333333323334446667777777777 777777777665432 233335555555443 57777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC-----CHHHHHHH
Q 038364 791 LFHELLETGFQPDAITFTALLAA-C--KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG-----YLDEAWDF 862 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~~t~~~ll~a-~--~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G-----~l~eA~~l 862 (1076)
+|++.. .| .| ..+..+-.. + ...++.++|.++|++..+. | +...+..|..+|. .| +.++|.++
T Consensus 239 ~~~~aa-~g-~~--~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG-YP--ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG-ST--HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC-CH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 777766 32 22 223333333 2 3467777777777776653 3 4556666666666 44 77777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH----cCChHHHHHHHHHHHh
Q 038364 863 IRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM----SNRWEDVERLRHSMDE 934 (1076)
Q Consensus 863 ~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~----~G~~~eA~~~~~~m~~ 934 (1076)
|++.- .-+...+..|...|.. ..|.++|...++++.+. .++..+..|+.+|.. ..+.++|...+++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 77776 5566666666655554 23777777777777653 345677777777764 3467777777777766
Q ss_pred CCC
Q 038364 935 VGV 937 (1076)
Q Consensus 935 ~g~ 937 (1076)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 663
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.28 E-value=1.5e-10 Score=136.44 Aligned_cols=371 Identities=12% Similarity=0.006 Sum_probs=229.1
Q ss_pred HHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCH---HHHHHHHhhcCCCCHhHHHHHHHHHHhcC-----C
Q 038364 542 VTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCL---QNAQEVFDNMKNRNIVAWNSLISGYCFKG-----L 613 (1076)
Q Consensus 542 ~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~---~~A~~lf~~m~~~d~~~~n~lI~~~~~~g-----~ 613 (1076)
..+.|++++|.+.+..+.+.| +...+..|-.+|...|+. ++|...|++..+.+...+..+-..+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 334455555555555555544 222333455556666776 78888888777666667777776555555 6
Q ss_pred hHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhH---HHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHH
Q 038364 614 FVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKE---ALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKF 690 (1076)
Q Consensus 614 ~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~---A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l 690 (1076)
.++|++.|++..+.| +...+..|...|...+..++ +.+.+....+.| +...+..+...|...+.++++.+.
T Consensus 90 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 788999999988866 33467777777776655443 444444444433 456677777788877765555544
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHhcCC---CchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhc----CCHHHHHHHHHh
Q 038364 691 FIQMQQEDIKPNSTTMSSLLQTCGGLG---LLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKS----GNLKSAREVFRK 763 (1076)
Q Consensus 691 ~~~m~~~gi~pd~~t~~~lL~a~~~~g---~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~----G~~~~A~~vf~~ 763 (1076)
.....+.-...+...+..+-..+...| +.++|...+....+.|. ++...+..|..+|... ++.++|.+.|++
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 333322212233347777777787888 88889999988888763 3344445677777665 799999999998
Q ss_pred cCCCChHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhhhcCC
Q 038364 764 SANKTLASWNCMIMG-F--AIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSG-----LVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 764 m~~~d~~s~n~li~~-~--~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g-----~~~eA~~~~~~m~~~~g 835 (1076)
....+...+..|... | ...++.++|+++|++..+.| +...+..|-..|. .| +.++|.++|++..
T Consensus 243 aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---- 314 (452)
T 3e4b_A 243 IAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---- 314 (452)
T ss_dssp HGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----
T ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----
Confidence 874466778877776 4 46899999999999999877 4555555555555 55 9999999998875
Q ss_pred CCCCcccHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCch
Q 038364 836 IIPTIEHYSCMVDLLGK----AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 836 ~~p~~~~y~~li~~l~r----~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
.-++..+..|..+|.. ..+.++|.+++++.-..-+......|...|.. ..|.++|...++++.+..+. .
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~ 391 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--E 391 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--H
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--H
Confidence 3456677788888876 34999999999987333344455566666653 46899999999999887653 3
Q ss_pred hHHHHHHHHHH--cCChHHHHHHHHHHH
Q 038364 908 NYNLMMNLLAM--SNRWEDVERLRHSMD 933 (1076)
Q Consensus 908 ~y~~L~~~y~~--~G~~~eA~~~~~~m~ 933 (1076)
.-..+..+... .++.++|.++.++-+
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44444444322 234566666666543
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.27 E-value=7.7e-11 Score=125.17 Aligned_cols=197 Identities=11% Similarity=0.061 Sum_probs=130.7
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
....+..+...|.+.|++++|...|++..+ .+...|..+...+...|++++|+..|+++.+.. ..+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555666677777777777777776643 345667777777777888888888887777632 2244566667777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYA 891 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A 891 (1076)
+...|++++|.++++++.+.. ..+...+..+...|.+.|++++|.+.++++ . .+.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 777888888888887776541 234556777778888888888888888775 2 234566777888888888888888
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 892 EIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 892 ~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
+..++++++..|+++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888888888888888888888888888888888876543
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.26 E-value=4.8e-10 Score=120.01 Aligned_cols=172 Identities=16% Similarity=0.026 Sum_probs=128.8
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLA 812 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~ 812 (1076)
+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+..
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 34455666667777777777777776554 235567777778888888888888888887764455654 45666777
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchH
Q 038364 813 ACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~ 890 (1076)
.+...|++++|.++++++.+.. ..+...+..++..|.+.|++++|.+.++++ . .+.+...|..+...+...|+.++
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 150 VSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 7888888888888888877641 223667788888899999999999988886 3 33456678888888999999999
Q ss_pred HHHHHHHHhcCCCCCchhHH
Q 038364 891 AEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~ 910 (1076)
|...+++++++.|+++....
T Consensus 228 A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 228 AASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHH
Confidence 99999999999998865543
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=1e-09 Score=119.45 Aligned_cols=224 Identities=12% Similarity=-0.021 Sum_probs=119.0
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhc----CCCchhHHHHHHHHHHcCCCCChhhHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGG----LGLLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
+...+..+...|.+.|++++|++.|++..+. -+...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555666666666666666666541 123344444444444 555555555555555543 444555
Q ss_pred HHHHHHhh----cCCHHHHHHHHHhcCC-CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038364 743 GLIDMYSK----SGNLKSAREVFRKSAN-KTLASWNCMIMGFAI----YGNGKEAILLFHELLETGFQPDAITFTALLAA 813 (1076)
Q Consensus 743 ~Li~~y~k----~G~~~~A~~vf~~m~~-~d~~s~n~li~~~~~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a 813 (1076)
.+..+|.. .|++++|.+.|++..+ .+...+..+...|.. .++.++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 55566666 6666666666655432 244555666666666 666666666666666643 33344444444
Q ss_pred HHh----cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 038364 814 CKN----SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGK----AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI- 884 (1076)
Q Consensus 814 ~~~----~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r----~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~- 884 (1076)
+.. .+++++|.++|++..+. .+...+..+..+|.+ .+++++|.+.+++.....+...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 554 56666666666655442 123444455555555 55555555555543111124444445555554
Q ss_pred ---cCCchHHHHHHHHHhcCCC
Q 038364 885 ---HGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 885 ---~g~~e~A~~~~~~l~~l~P 903 (1076)
.++.++|...++++.+++|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 5555555555555555554
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.25 E-value=1.2e-10 Score=123.66 Aligned_cols=210 Identities=14% Similarity=0.046 Sum_probs=140.5
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHc
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIY 782 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~ 782 (1076)
|..+...+...|++++|...+..+++. ...+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 333333344444444444444444432 12234555666677777777777777776654 23556777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDF 862 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l 862 (1076)
|++++|++.|+++.+.. ..+...+..+...+...|++++|.++++++.+. ...+...+..+...|.+.|++++|.+.
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887742 334556777777788888888888888887764 123466788888899999999999999
Q ss_pred HHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 863 IRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 863 ~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
+++. . .+.+..+|..+...+...|++++|...++++++++|+++..+..+..+....
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 8886 2 3345778999999999999999999999999999999988877776655443
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.25 E-value=1.2e-09 Score=118.85 Aligned_cols=223 Identities=11% Similarity=-0.007 Sum_probs=193.5
Q ss_pred ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHhcCC-CChHHHHHHH
Q 038364 702 NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK----SGNLKSAREVFRKSAN-KTLASWNCMI 776 (1076)
Q Consensus 702 d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k----~G~~~~A~~vf~~m~~-~d~~s~n~li 776 (1076)
+..++..+-..+...+++++|.+.+....+. .+...+..+..+|.. .|++++|.+.|++..+ .+...|..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4456677777888899999999999999983 355677889999999 9999999999998764 4678899999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 777 MGFAI----YGNGKEAILLFHELLETGFQPDAITFTALLAACKN----SGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 777 ~~~~~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~----~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
..|.. .++.++|+..|++..+.+ +...+..+-..+.. .++.++|.++|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 66778888888888 99999999999998874 3 5667888889
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH--
Q 038364 849 LLGK----AGYLDEAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM-- 918 (1076)
Q Consensus 849 ~l~r----~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~-- 918 (1076)
+|.+ .++.++|.+.+++.-...+...+..+...+.. .+++++|+..++++.+.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9988 99999999999987333467788889999999 9999999999999999876 6789999999999
Q ss_pred --cCChHHHHHHHHHHHhCC
Q 038364 919 --SNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 919 --~G~~~eA~~~~~~m~~~g 936 (1076)
.|++++|.+.+++..+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999998776
No 51
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.24 E-value=2.6e-08 Score=121.89 Aligned_cols=432 Identities=10% Similarity=0.070 Sum_probs=264.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCC---hHHHHHHHHHHH
Q 038364 416 KQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKD---HNLSSWNSMISSYTGLGY---VDVAWSLFNKMN 489 (1076)
Q Consensus 416 ~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~---~~~A~~lf~~M~ 489 (1076)
...++..+.... .|...|..++..+.+.+.++.|+.+|+++.. .....|...+..-.+.|. .+.+.++|++..
T Consensus 52 i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 334455555543 4777788888887777788888888877742 344567777777777777 777778887776
Q ss_pred hCC-CCCChhhHHHHHHHHHhcCCh----hhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHH-cCC
Q 038364 490 SSR-IQPDIITWNCLLSGHFTHGSY----QNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILR-NGL 563 (1076)
Q Consensus 490 ~~g-~~pd~~ty~~Li~~~~~~g~~----~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~-~g~ 563 (1076)
... ..|++..|..-+.-..+.++. +++ .+..+++|+.++. .|.
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~-------------------------------r~~vr~~FErAl~~vG~ 179 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEA-------------------------------RNIVIQAFQVVVDKCAI 179 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH-------------------------------HHHHHHHHHHHHHHTTT
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchh-------------------------------HHHHHHHHHHHHHHhCc
Confidence 653 235666666655544443332 111 1223344444433 244
Q ss_pred -CCc-hhHHHHHHHHHH---------hCCCHHHHHHHHhhcCC-C--CH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038364 564 -DYD-LYVGTSLMDMYV---------KNDCLQNAQEVFDNMKN-R--NI-VAWNSLISGYCFKGLFVNAKKMLNQMEEEE 628 (1076)
Q Consensus 564 -~~d-~~v~~aLi~~y~---------k~g~~~~A~~lf~~m~~-~--d~-~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g 628 (1076)
.++ ..+|...+.... ..++++.++++|++... | +. ..|.....---..+. ..+.+++.+.
T Consensus 180 ~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---- 254 (679)
T 4e6h_A 180 FEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---- 254 (679)
T ss_dssp TCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH----
T ss_pred ccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh----
Confidence 332 345666665443 23456778888887764 2 11 233221111000000 0011111100
Q ss_pred CCCCccchhhhhhhhhhcCChhHHHHHHHHhHh--cCCC---------------C--------chHHHHHHHHHHhcCC-
Q 038364 629 IKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKN--SGIY---------------P--------NVVTWTSLISGSLQNE- 682 (1076)
Q Consensus 629 ~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~--~gi~---------------p--------d~~ty~~LI~~~~~~g- 682 (1076)
..+++.|...+.++.+ .++. | ....|...++---.++
T Consensus 255 -----------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~ 317 (679)
T 4e6h_A 255 -----------------SAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL 317 (679)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc
Confidence 0112222222222111 0000 0 0133444444333222
Q ss_pred ------ChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHH-HHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 038364 683 ------NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGK-EIHCLCLKNGFIKDAYVATGLIDMYSKSGNLK 755 (1076)
Q Consensus 683 ------~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~-~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~ 755 (1076)
..+.+..+|++.... +.-+...|.....-+...|+.+.|. .+++..+.. .+.+...+-..+..+.+.|+++
T Consensus 318 ~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 318 ELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHH
Confidence 123455667777654 3446677777777777888999996 999998874 4456677888999999999999
Q ss_pred HHHHHHHhcCC-------------CC------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC-CCCHHHHH
Q 038364 756 SAREVFRKSAN-------------KT------------LASWNCMIMGFAIYGNGKEAILLFHELLET-GF-QPDAITFT 808 (1076)
Q Consensus 756 ~A~~vf~~m~~-------------~d------------~~s~n~li~~~~~~g~~~~Al~l~~~M~~~-g~-~Pd~~t~~ 808 (1076)
.|+++|+++.+ |+ ...|-..+....+.|..+.|..+|++..+. +. .+......
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~ 475 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLEN 475 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 99999987653 21 236888888888999999999999999885 21 22222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHH
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKP----DATIWGALLGSCR 883 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~p----d~~~~~~Ll~a~~ 883 (1076)
+.+. +...++.+.|+++|+...+.+ .-+...+...++.....|+.+.|..+|++.- ..| ....|...+.--.
T Consensus 476 A~lE-~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 476 AYIE-YHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHHH-HTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred HHHH-HHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 2222 122355899999999998863 2345567788999999999999999999962 233 3458999999999
Q ss_pred HcCCchHHHHHHHHHhcCCCCCc
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+|+.+.+..+.+++.+..|+++
T Consensus 553 ~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 553 KVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999874
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.22 E-value=7.4e-10 Score=115.72 Aligned_cols=207 Identities=14% Similarity=0.052 Sum_probs=145.0
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLID 746 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~ 746 (1076)
+...|..+...+.+.|++++|++.|+++.+. .|+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc----------------------------------chHHHHHHHH
Confidence 4556666667777777777777777766542 121 2334455566
Q ss_pred HHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHH
Q 038364 747 MYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIY-GNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVE 821 (1076)
Q Consensus 747 ~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~-g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~ 821 (1076)
.|...|++++|.+.|++.. ..+...|..+...+... |++++|+..|+++.+.+..|+. ..+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666543 23455677777777777 8888888888887774344543 45666777788888888
Q ss_pred HHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-C-CCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038364 822 EGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-K-PDATIWGALLGSCRIHGHLEYAEIASRR 897 (1076)
Q Consensus 822 eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~ 897 (1076)
+|.++++++.+. .| +...+..++..|.+.|++++|.+.+++. .. + .+...|..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 888888887653 23 3567778888888888888888888876 22 2 4566777777778899999999999999
Q ss_pred HhcCCCCCchhHHHH
Q 038364 898 LFKLEPCNSANYNLM 912 (1076)
Q Consensus 898 l~~l~P~~~~~y~~L 912 (1076)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999987665544
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.21 E-value=9.7e-10 Score=118.99 Aligned_cols=244 Identities=11% Similarity=-0.038 Sum_probs=131.0
Q ss_pred HhCCChhHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChH
Q 038364 372 LRNEKWENAIKLFREMQFSSAK--A-ISRTIVKMLQACAKVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLE 448 (1076)
Q Consensus 372 ~~~g~~~eAl~lf~~M~~~g~~--p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~ 448 (1076)
...|++++|++.|+++.+.... | +..++..+...+...|++++|...+..+++...
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--------------------- 74 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--------------------- 74 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---------------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---------------------
Confidence 3456777777777777654211 1 233444445555555555555555555554432
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 038364 449 LATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGF 528 (1076)
Q Consensus 449 ~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi 528 (1076)
.+...|..+...|...|++++|++.|++..+.... +..+|..+...+.+.|++++|++.|+++.+..
T Consensus 75 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~- 141 (275)
T 1xnf_A 75 -----------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD- 141 (275)
T ss_dssp -----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred -----------CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 23344444555555555555555555555443322 44555555555555555555555555555433
Q ss_pred CCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCC-------HhHH
Q 038364 529 RPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRN-------IVAW 601 (1076)
Q Consensus 529 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d-------~~~~ 601 (1076)
|+.......+..+...|++++|...+....+.... +...+ .++..+...++.++|...+++....+ ...|
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 218 (275)
T 1xnf_A 142 -PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN 218 (275)
T ss_dssp -TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHH
Confidence 44443344444444556666666666555554322 22222 35666677777777887777766532 3566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHH
Q 038364 602 NSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVII 656 (1076)
Q Consensus 602 n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf 656 (1076)
..+...|.+.|++++|...|++..+. .|+. +......+...|++++|.+-+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77777777777777777777777654 2322 333344555556666655544
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.21 E-value=1.4e-10 Score=133.36 Aligned_cols=269 Identities=11% Similarity=0.020 Sum_probs=158.1
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhcCCCC-c--hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHH
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNSGIYP-N--VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQ 711 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~p-d--~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~ 711 (1076)
.+..+...+.+.|++++|...|++..+..... . ...|..+...|...|++++|.+.+++.....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 77 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------- 77 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------------
Confidence 34445556666777777777777766542111 0 2456666666666777777777666654310
Q ss_pred HHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHH
Q 038364 712 TCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAI 781 (1076)
Q Consensus 712 a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~ 781 (1076)
.+.+..+ ...++..+...|...|++++|.+.+++..+ .+ ..+|..+...|..
T Consensus 78 ------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 78 ------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp ------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 0000011 123344455555555555555555554332 11 2255556666666
Q ss_pred cCC--------------------HHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 038364 782 YGN--------------------GKEAILLFHELLE----TGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNI 836 (1076)
Q Consensus 782 ~g~--------------------~~~Al~l~~~M~~----~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~ 836 (1076)
.|+ +++|++.+++..+ .+-.|.. .++..+...+...|++++|.+++++..+...-
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 666 6666666665443 1111221 24555556677777777777777766542111
Q ss_pred CCC----cccHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 837 IPT----IEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 837 ~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.++ ...+..+...|.+.|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 111 2356677777778888888777776641 1112 346677777788888888888888888776443
Q ss_pred C------chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 905 N------SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 905 ~------~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
. ...+..++.+|.+.|++++|.+.+++..+
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 45677888888888888888888887643
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.19 E-value=7.3e-11 Score=136.57 Aligned_cols=266 Identities=9% Similarity=-0.016 Sum_probs=164.0
Q ss_pred hhhhhhhhhcCChhHHHHHHHHhHhcCCCCch----HHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHH
Q 038364 637 NSLVSGYSIWGQSKEALVIIHHMKNSGIYPNV----VTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQT 712 (1076)
Q Consensus 637 ~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~----~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a 712 (1076)
..+...+...|++++|...|++..+.... +. ..|..+...|...|++++|++.+++..+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 116 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-------------- 116 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 34445555666666666666666553211 11 345555566666666666666666554310
Q ss_pred HhcCCCchhHHHHHHHHHHcCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHc
Q 038364 713 CGGLGLLQNGKEIHCLCLKNGFI-KDAYVATGLIDMYSKSGNLKSAREVFRKSANK---------TLASWNCMIMGFAIY 782 (1076)
Q Consensus 713 ~~~~g~~~~a~~i~~~~~~~g~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---------d~~s~n~li~~~~~~ 782 (1076)
.+.+.. .....+..+...|...|++++|.+.|++..+. ....|..+...|...
T Consensus 117 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 -----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 000001 12334455566666666666666666543321 123566666677777
Q ss_pred CC-----------------HHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-
Q 038364 783 GN-----------------GKEAILLFHELLET----GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT- 839 (1076)
Q Consensus 783 g~-----------------~~~Al~l~~~M~~~----g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~- 839 (1076)
|+ +++|++.+++..+. +-.|.. .++..+...+...|++++|.+++++..+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 77 77777776665431 111222 35556666677788888888887776543111111
Q ss_pred ---cccHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---
Q 038364 840 ---IEHYSCMVDLLGKAGYLDEAWDFIRTMP-F---KPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN--- 905 (1076)
Q Consensus 840 ---~~~y~~li~~l~r~G~l~eA~~l~~~m~-~---~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~--- 905 (1076)
...+..+...|...|++++|.+.+++.. . ..+ ..+|..+...+...|++++|...+++++++.++.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 2267778888888888888888887651 1 111 4577788888999999999999999988764432
Q ss_pred ---chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 906 ---SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 906 ---~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...|..++.+|.+.|++++|.+.+++..+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34788999999999999999999998754
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.19 E-value=6.3e-11 Score=136.29 Aligned_cols=295 Identities=12% Similarity=0.046 Sum_probs=202.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----cchhhhhhhhhhcCChhHHHHHHHHhHhc----CCCC
Q 038364 596 RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-----VSWNSLVSGYSIWGQSKEALVIIHHMKNS----GIYP 666 (1076)
Q Consensus 596 ~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-----~t~~~Li~~y~k~g~~~~A~~lf~~m~~~----gi~p 666 (1076)
.....|......+.+.|++++|+..|++..+.. |+. ..+..+...|...|++++|...|++..+. +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345667778888999999999999999998873 443 46778889999999999999999987642 2122
Q ss_pred -chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCC-CChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHH
Q 038364 667 -NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIK-PNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGL 744 (1076)
Q Consensus 667 -d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~-pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~L 744 (1076)
....|..+...|...|++++|++.+++..+.... ++.. ....++..+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l 133 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-------------------------------chHHHHHHH
Confidence 2456778888888999999999998887652100 0100 012234445
Q ss_pred HHHHhhcCC--------------------HHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 038364 745 IDMYSKSGN--------------------LKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHEL 795 (1076)
Q Consensus 745 i~~y~k~G~--------------------~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M 795 (1076)
...|...|+ +++|.+.+++..+ .+ ...|..+...|...|++++|+..|++.
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555 5555555544321 11 235677777788888888888887776
Q ss_pred HHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 796 LETG-FQPD----AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 796 ~~~g-~~Pd----~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
.+.. -.++ ..++..+...+...|++++|.+++++..+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 6421 0122 125666677788888888888888776542111111 456778888888999999998888775
Q ss_pred C----CCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC------CCchhHHHHHHHHHHcCChH
Q 038364 867 P----FKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEP------CNSANYNLMMNLLAMSNRWE 923 (1076)
Q Consensus 867 ~----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P------~~~~~y~~L~~~y~~~G~~~ 923 (1076)
. ..++ ..+|..+...+...|++++|...+++++++.+ ....++..++.+|...|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1 1122 45778888889999999999999999887632 23456888888998888753
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.19 E-value=5.6e-10 Score=113.57 Aligned_cols=165 Identities=13% Similarity=0.015 Sum_probs=124.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHH
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCM 846 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~l 846 (1076)
+...|..+...|.+.|++++|++.|++..+ +.|+. ..+..+...+...|++++|...+...... ...+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 345666777777777777777777777776 34544 45666666777777777777777776543 12234556666
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 847 VDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
...+...+++++|.+.+++. . .+.+...|..+...+...|++++|+..++++++++|+++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77777888888888877775 2 234566888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 038364 925 VERLRHSMDEVG 936 (1076)
Q Consensus 925 A~~~~~~m~~~g 936 (1076)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999886643
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.19 E-value=2e-10 Score=136.35 Aligned_cols=192 Identities=9% Similarity=-0.004 Sum_probs=164.3
Q ss_pred CChhhHHHHHHHHhhcCCH-HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 736 KDAYVATGLIDMYSKSGNL-KSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALL 811 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~-~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll 811 (1076)
.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3567777788888888888 888888877642 3567889999999999999999999999988 568877888888
Q ss_pred HHHHhc---------CCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC--
Q 038364 812 AACKNS---------GLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKA--------GYLDEAWDFIRTM-PFKP-- 870 (1076)
Q Consensus 812 ~a~~~~---------g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~--------G~l~eA~~l~~~m-~~~p-- 870 (1076)
..+... |++++|.+.|++..+. .|+ ...|..+..+|.+. |++++|.+.+++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 888888 9999999999998764 344 67888899999988 9999999999987 3345
Q ss_pred --CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 871 --DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 871 --d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+...|..+..++...|++++|+..++++++++|+++..+..++.++...|++++|.+.+.++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78899999999999999999999999999999999999999999999999999999765444
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.19 E-value=1.5e-10 Score=128.71 Aligned_cols=266 Identities=12% Similarity=0.025 Sum_probs=166.6
Q ss_pred hhhhhhhcCChhHHHHHHHHhHhcCCCCc---hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhc
Q 038364 639 LVSGYSIWGQSKEALVIIHHMKNSGIYPN---VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGG 715 (1076)
Q Consensus 639 Li~~y~k~g~~~~A~~lf~~m~~~gi~pd---~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~ 715 (1076)
....+...|++++|...|++..+...... ...|..+...|...|++++|.+.+++.....
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------- 73 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------------- 73 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----------------
Confidence 34455566666666666666655321100 2445556666666666666666666553210
Q ss_pred CCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCC-
Q 038364 716 LGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGN- 784 (1076)
Q Consensus 716 ~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~- 784 (1076)
.+.+..+ ...++..+...|...|++++|.+.+++..+ .+ ..+|..+...|...|+
T Consensus 74 --------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 74 --------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp --------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcc
Confidence 0001111 133445566666666666666666655332 12 2256666677777777
Q ss_pred -------------------HHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-
Q 038364 785 -------------------GKEAILLFHELLET----GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT- 839 (1076)
Q Consensus 785 -------------------~~~Al~l~~~M~~~----g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~- 839 (1076)
+++|++.+++..+. +-.|.. .++..+...+...|++++|.+++++..+...-.++
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 77777777665431 111221 24556666677788888888888776542111111
Q ss_pred ---cccHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---
Q 038364 840 ---IEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN--- 905 (1076)
Q Consensus 840 ---~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~--- 905 (1076)
...+..+...|.+.|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.|..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 2367778888888899999888887751 1122 4567778888999999999999999988765432
Q ss_pred ---chhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 906 ---SANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 906 ---~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
...+..++.+|.+.|++++|.+.+++..+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 347889999999999999999999998653
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.19 E-value=4.3e-09 Score=113.86 Aligned_cols=231 Identities=8% Similarity=0.009 Sum_probs=156.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc--ccHHHHHHHHHh
Q 038364 467 SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNG--SSVSVVLQAVTE 544 (1076)
Q Consensus 467 ~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~--~t~~~ll~a~~~ 544 (1076)
.....+.+.|++++|++.|++..+.... +...|..+...+...|++++|++.+++..+....|+. ..+..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444555666666666666666655433 4446666666666666666666666666653211111 114555566666
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 038364 545 LRLLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKML 621 (1076)
Q Consensus 545 ~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf 621 (1076)
.|++++|...+..+++.... +..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|++.|
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777766666665433 456788899999999999999999998875 35667777773444455999999999
Q ss_pred HHHHHcCCCCC-ccchhhhhhhhhhcCC---hhHHHHHHHHhHhc-CCCCc------hHHHHHHHHHHhcCCChhHHHHH
Q 038364 622 NQMEEEEIKPD-LVSWNSLVSGYSIWGQ---SKEALVIIHHMKNS-GIYPN------VVTWTSLISGSLQNENYRESLKF 690 (1076)
Q Consensus 622 ~~M~~~g~~pd-~~t~~~Li~~y~k~g~---~~~A~~lf~~m~~~-gi~pd------~~ty~~LI~~~~~~g~~~eAl~l 690 (1076)
++..+.. |+ ...+..+...+...|+ .++|...|++..+. .-.|+ ...|..+...|.+.|++++|.+.
T Consensus 166 ~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998764 44 4566667777777787 88888888887752 11233 25777788888889999999999
Q ss_pred HHHHhhcCCCCCh
Q 038364 691 FIQMQQEDIKPNS 703 (1076)
Q Consensus 691 ~~~m~~~gi~pd~ 703 (1076)
|++..+ +.|+.
T Consensus 244 ~~~al~--~~p~~ 254 (272)
T 3u4t_A 244 WKNILA--LDPTN 254 (272)
T ss_dssp HHHHHH--HCTTC
T ss_pred HHHHHh--cCccH
Confidence 998876 34543
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.17 E-value=4.3e-10 Score=128.99 Aligned_cols=244 Identities=10% Similarity=0.039 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCC-hhhHHHHHHHHhcCCC-chhHHHHHHHHHHcCCCCChhhHHHHH
Q 038364 668 VVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPN-STTMSSLLQTCGGLGL-LQNGKEIHCLCLKNGFIKDAYVATGLI 745 (1076)
Q Consensus 668 ~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd-~~t~~~lL~a~~~~g~-~~~a~~i~~~~~~~g~~~d~~~~~~Li 745 (1076)
...|+.+...+.+.|++++|++.+++.+. +.|+ ...|..+..++...|+ +++|...+..+++.. ..+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45567777777888888888888888876 3454 4566777777777785 888888888877742 23566777888
Q ss_pred HHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-cCCH
Q 038364 746 DMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKN-SGLV 820 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~-~g~~ 820 (1076)
.+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 888888888888888887653 4667888888888888888888888888887 4554 4567777777777 5655
Q ss_pred HHH-----HHHHHHhhhcCCCCCC-cccHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-----
Q 038364 821 EEG-----WKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAG--YLDEAWDFIRTMPFKP-DATIWGALLGSCRIHG----- 886 (1076)
Q Consensus 821 ~eA-----~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G--~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~~~~g----- 886 (1076)
++| .+.|++..+ +.|+ ...|..+..+|.+.| ++++|.+.++++...| +...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 477777664 3454 557777888888877 5888888888775444 4557778888887764
Q ss_pred ---C-chHHHHHHHHH-hcCCCCCchhHHHHHHHHHHc
Q 038364 887 ---H-LEYAEIASRRL-FKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 887 ---~-~e~A~~~~~~l-~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899998888888877766543
No 62
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.14 E-value=1.2e-09 Score=114.85 Aligned_cols=191 Identities=16% Similarity=0.083 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLI 745 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li 745 (1076)
+...|..+...+.+.|++++|+..|++..+ ..| +...+..+..++...|++++|...++.+++.. +.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 444455555555555555555555555543 222 23344444444444555555555554444421 11233444455
Q ss_pred HHHhhc-----------CCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038364 746 DMYSKS-----------GNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALL 811 (1076)
Q Consensus 746 ~~y~k~-----------G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll 811 (1076)
..|.+. |++++|.+.|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 555554 666666666655432 234555566666666666666666666666544 4455555555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHh
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRT 865 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~ 865 (1076)
.++...|++++|...|++..+. .|+ ...+..+..++.+.|++++|.+.+++
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5566666666666666665542 232 34455555555555666665555544
No 63
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.14 E-value=1.4e-09 Score=124.60 Aligned_cols=223 Identities=9% Similarity=0.063 Sum_probs=189.4
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCC-HHHHHHHHHhcCC---CChHHHHHHHHH
Q 038364 704 TTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK-DAYVATGLIDMYSKSGN-LKSAREVFRKSAN---KTLASWNCMIMG 778 (1076)
Q Consensus 704 ~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~-d~~~~~~Li~~y~k~G~-~~~A~~vf~~m~~---~d~~s~n~li~~ 778 (1076)
..|..+...+...|++++|...+..+++. .| +..+|+.+...|.+.|+ +++|.+.|++... .+...|+.+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45667777788899999999999999984 44 57788999999999997 9999999998763 567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHh-cCC
Q 038364 779 FAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGK-AGY 855 (1076)
Q Consensus 779 ~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r-~G~ 855 (1076)
+...|++++|+..|+++++ +.|+. ..|..+..++...|++++|...|+++.+. .|+ ...|+.+..+|.+ .|.
T Consensus 176 ~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998 56654 67888888999999999999999999864 454 6788999999999 677
Q ss_pred HHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC------
Q 038364 856 LDEA-----WDFIRTM-PFKP-DATIWGALLGSCRIHG--HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN------ 920 (1076)
Q Consensus 856 l~eA-----~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g--~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G------ 920 (1076)
.++| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++..+..|+++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6777 4667665 3344 5679999999998888 699999999998 999999999999999999975
Q ss_pred ---ChHHHHHHHHHH-Hh
Q 038364 921 ---RWEDVERLRHSM-DE 934 (1076)
Q Consensus 921 ---~~~eA~~~~~~m-~~ 934 (1076)
..++|.++++++ .+
T Consensus 330 ~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 358999999998 44
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.12 E-value=9.8e-08 Score=116.80 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=48.8
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---cHHHHHHHHHHHHhCC-CCCHHHHH
Q 038364 360 DDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGA---FHEGKQIHGYVLKSAL-ESNLSVCN 435 (1076)
Q Consensus 360 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~i~~~~~~~g~-~~d~~v~n 435 (1076)
|..+|..+|..+.+.+.++.|..+|+++... ++....-|..-+..-.+.++ .+.+.++++..+.... .|++.+|.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6667777777776667777777777776654 23344455555555555555 6666666666655441 34555665
Q ss_pred HHHHHHHhCC
Q 038364 436 CLISMYSRNN 445 (1076)
Q Consensus 436 ~Li~~y~k~g 445 (1076)
..+....+.+
T Consensus 144 ~Yl~f~~~~~ 153 (679)
T 4e6h_A 144 SYITYVRKKN 153 (679)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 5555444433
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.10 E-value=5.3e-10 Score=129.27 Aligned_cols=270 Identities=12% Similarity=0.035 Sum_probs=155.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----cchhhhhhhhhhcCChhHHHHHHHHhHhc----C-CCCchHHH
Q 038364 602 NSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-----VSWNSLVSGYSIWGQSKEALVIIHHMKNS----G-IYPNVVTW 671 (1076)
Q Consensus 602 n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-----~t~~~Li~~y~k~g~~~~A~~lf~~m~~~----g-i~pd~~ty 671 (1076)
..+...+...|++++|+..|++..+.. |+. ..+..+...|...|++++|...|++..+. + .......|
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344455666666666666666666552 332 24556666666777777777776665431 1 11234556
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHhhcCCC-CChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 038364 672 TSLISGSLQNENYRESLKFFIQMQQEDIK-PNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK 750 (1076)
Q Consensus 672 ~~LI~~~~~~g~~~eAl~l~~~m~~~gi~-pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k 750 (1076)
..+...|...|++++|++.+++..+.... .+. .....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDR-------------------------------LSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch-------------------------------HHHHHHHHHHHHHHHH
Confidence 66777777777777777777776532000 000 0011223334444444
Q ss_pred cCC-----------------HHHHHHHHHhcCC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC
Q 038364 751 SGN-----------------LKSAREVFRKSAN-----K----TLASWNCMIMGFAIYGNGKEAILLFHELLETGF-QPD 803 (1076)
Q Consensus 751 ~G~-----------------~~~A~~vf~~m~~-----~----d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd 803 (1076)
.|+ +++|.+.+++..+ . ....|..+...|...|++++|+..|++..+..- .++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 444 4444444433211 0 113555566666666666666666666554110 011
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC
Q 038364 804 ----AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEAWDFIRTMP-F---KPD 871 (1076)
Q Consensus 804 ----~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m~-~---~pd 871 (1076)
..++..+...+...|++++|.+++++..+...-..+ ...+..+...|.+.|++++|.+.+++.. . .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 124555666677777777777777665542111111 4566777788888888888888777651 1 112
Q ss_pred ----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 872 ----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 872 ----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
..++..+...+...|++++|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 346777888899999999999999999887663
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.09 E-value=1.1e-09 Score=121.68 Aligned_cols=274 Identities=12% Similarity=0.046 Sum_probs=147.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----cchhhhhhhhhhcCChhHHHHHHHHhHhc----CCCC-chHH
Q 038364 601 WNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-----VSWNSLVSGYSIWGQSKEALVIIHHMKNS----GIYP-NVVT 670 (1076)
Q Consensus 601 ~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-----~t~~~Li~~y~k~g~~~~A~~lf~~m~~~----gi~p-d~~t 670 (1076)
+......+...|++++|+..|++..+.. |+. ..+..+...|...|++++|.+.|++..+. +-.| ....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3334455666667777777776666552 332 34556666667777777777777665431 1111 2445
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHhcCCC-------------chhHHHHHHHHHHc
Q 038364 671 WTSLISGSLQNENYRESLKFFIQMQQEDI-KPN----STTMSSLLQTCGGLGL-------------LQNGKEIHCLCLKN 732 (1076)
Q Consensus 671 y~~LI~~~~~~g~~~eAl~l~~~m~~~gi-~pd----~~t~~~lL~a~~~~g~-------------~~~a~~i~~~~~~~ 732 (1076)
|..+...|...|++++|.+.+++..+... .++ ..++..+...+...|+ .+.+...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 66667777777777777777776643110 011 1123333333333333 0000000
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC
Q 038364 733 GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHELLETGF-QP 802 (1076)
Q Consensus 733 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~P 802 (1076)
+++|.+.+++... .+ ...|..+...+...|++++|+..+++..+... .+
T Consensus 159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 3333333332211 01 12445555566666666666666655543100 01
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHhCC----CCC
Q 038364 803 D----AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKP 870 (1076)
Q Consensus 803 d----~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~p 870 (1076)
+ ..++..+...+...|++++|.+++++..+...-.++ ...+..+...|.+.|++++|.+.+++.. ..+
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 124555555666667777777666665432111111 4456677777777788887777776641 111
Q ss_pred C----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 871 D----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 871 d----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
+ ..+|..+...+...|++++|...+++++++.++
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1 346777888889999999999999999887664
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=3.6e-10 Score=124.69 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=121.0
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhc-------CCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHc------C
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQE-------DIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN------G 733 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~-------gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~------g 733 (1076)
+...|..+...|...|++++|+.+++++.+. .......++..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567778888888888888888888887652 11112334445555555556666665555555442 1
Q ss_pred CC-CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCH-H
Q 038364 734 FI-KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLET------GFQPDA-I 805 (1076)
Q Consensus 734 ~~-~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~------g~~Pd~-~ 805 (1076)
-. .....+..+...|...|++++|.+.| +++.+. +-.|+. .
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHH-------------------------------HHHHHHHHHhcCCCChHHHH
Confidence 11 12334444445555555555555444 444432 111222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC----------CC
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDY-----NIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP----------FK 869 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~-----g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~----------~~ 869 (1076)
.+..+...+...|++++|.++++++.+.. +..|. ...+..+...|.+.|++++|.+.++++. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 33444444555555555555555443320 00111 2344455555555555555555554431 00
Q ss_pred C-------CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 870 P-------DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 870 p-------d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
+ ....+..+...+...+.++++...++++.+..|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1112233334455567777778888888888888888899999999999999999999988754
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.06 E-value=1.3e-08 Score=113.03 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=134.0
Q ss_pred hHHHHHHHHHhhcCCCCChhhHHHHHHHHh-------cCCCc-------hhHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 038364 685 RESLKFFIQMQQEDIKPNSTTMSSLLQTCG-------GLGLL-------QNGKEIHCLCLKNGFIKDAYVATGLIDMYSK 750 (1076)
Q Consensus 685 ~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~-------~~g~~-------~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k 750 (1076)
++|...|++.... .+-+...|..+...+. ..|++ ++|..+++..++.-...+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5666677766652 1223445555554443 24665 6677777776663112244567777777777
Q ss_pred cCCHHHHHHHHHhcCC--C-ChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHH
Q 038364 751 SGNLKSAREVFRKSAN--K-TLA-SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAAC-KNSGLVEEGWK 825 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~--~-d~~-s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~-~~~g~~~eA~~ 825 (1076)
.|++++|.++|++..+ | +.. .|..++..+.+.|+.++|..+|++..+.. +++...|....... ...|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776553 2 233 67777777777777777777777777632 12223333322221 12577777777
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 826 YFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP----FKP--DATIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~----~~p--d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.- +.| ....|..++.....+|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776532 1235566777777777777777777777651 243 35577777777777777777777777777
Q ss_pred cCCCCCc
Q 038364 900 KLEPCNS 906 (1076)
Q Consensus 900 ~l~P~~~ 906 (1076)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777654
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.05 E-value=5e-09 Score=120.27 Aligned_cols=230 Identities=8% Similarity=-0.039 Sum_probs=105.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCC-C-----ChhhHH
Q 038364 674 LISGSLQNENYRESLKFFIQMQQEDI-KPN----STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI-K-----DAYVAT 742 (1076)
Q Consensus 674 LI~~~~~~g~~~eAl~l~~~m~~~gi-~pd----~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~-~-----d~~~~~ 742 (1076)
....+...|++++|++.|++..+.-. .+| ..++..+...+...|+++.|...+...++.--. + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34455666777777777776654200 111 234444444555555555555555544432000 0 123444
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHH
Q 038364 743 GLIDMYSKSGNLKSAREVFRKSAN-----KTL----ASWNCMIMGFAIYGNGKEAILLFHELLET----GFQPDA-ITFT 808 (1076)
Q Consensus 743 ~Li~~y~k~G~~~~A~~vf~~m~~-----~d~----~s~n~li~~~~~~g~~~~Al~l~~~M~~~----g~~Pd~-~t~~ 808 (1076)
.+...|...|++++|.+.|++..+ .+. .+|+.+...|...|++++|+..|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555555555555555555544321 111 24445555555555555555555554431 111222 2344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPD-ATIWGALLGSCRIHGH 887 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd-~~~~~~Ll~a~~~~g~ 887 (1076)
.+...+...|++++|.+++++..+...-.. .|. ...+..+...+...|+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAG------------------------------DVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------------------------CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcC------------------------------CHHHHHHHHHHHHHHhCCCc
Confidence 444445555555555555544432100000 111 1122333344444444
Q ss_pred ---chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 888 ---LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 888 ---~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.++|...+++. ...|.....+..|+.+|.+.|++++|.+.+++..+
T Consensus 319 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444443 22223334555666666666666666666666543
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.04 E-value=4.1e-09 Score=121.02 Aligned_cols=189 Identities=8% Similarity=-0.016 Sum_probs=132.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC---CCC-HHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHELLET--GF---QPD-AITFT 808 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~--g~---~Pd-~~t~~ 808 (1076)
....|...|++++|.+.|++..+ +| ..+|..+...|...|++++|+..+++..+. .. .|. ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55566677777777777766543 22 246677777778888888888777776642 01 111 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEAWDFIRTM-------PFKPD-ATIWG 876 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA~~l~~~m-------~~~pd-~~~~~ 876 (1076)
.+...|...|++++|.+.|++..+...-.++ ...+..+...|.+.|++++|.+.+++. ...|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6677788888888888888776643111111 236778888888999998888888775 22143 45788
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhcC-----CCCCchhHHHHHHHHHHcCC---hHHHHHHHHHH
Q 038364 877 ALLGSCRIHGHLEYAEIASRRLFKL-----EPCNSANYNLMMNLLAMSNR---WEDVERLRHSM 932 (1076)
Q Consensus 877 ~Ll~a~~~~g~~e~A~~~~~~l~~l-----~P~~~~~y~~L~~~y~~~G~---~~eA~~~~~~m 932 (1076)
.+...+...|++++|...+++++++ +|.....+..++.+|...|+ +++|..++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 8889999999999999999999886 33334446789999999999 88888887765
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.04 E-value=2.1e-09 Score=133.00 Aligned_cols=161 Identities=20% Similarity=0.230 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHH
Q 038364 769 LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCM 846 (1076)
Q Consensus 769 ~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~l 846 (1076)
..+|+.|...|.+.|++++|++.|++.++ +.|+. ..+..+..++.+.|++++|.+.|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 34677777777777777777777777777 45654 46777777788888888888888877653 454 5677888
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 847 VDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 847 i~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
..+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|+++.+|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888775 3444 466899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 038364 925 VERLRHSMDE 934 (1076)
Q Consensus 925 A~~~~~~m~~ 934 (1076)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.04 E-value=5e-09 Score=106.42 Aligned_cols=166 Identities=11% Similarity=0.026 Sum_probs=140.0
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLA 812 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~ 812 (1076)
+..+|..|...|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|+..+++.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567888899999999999999999997653 46678999999999999999999999999874 444 445666667
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchH
Q 038364 813 ACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~ 890 (1076)
.+...++++++.+.+....+. .+.+...+..+...|.+.|++++|++.+++. ... .+..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 788999999999999988764 2234667889999999999999999999886 333 457789999999999999999
Q ss_pred HHHHHHHHhcCCCCCc
Q 038364 891 AEIASRRLFKLEPCNS 906 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~ 906 (1076)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999763
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.01 E-value=2e-08 Score=111.55 Aligned_cols=211 Identities=7% Similarity=0.020 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHh-------hcCCH-------HHHHHHHHhcCC----CChHHHHHHHHHHHH
Q 038364 720 QNGKEIHCLCLKNGFIKDAYVATGLIDMYS-------KSGNL-------KSAREVFRKSAN----KTLASWNCMIMGFAI 781 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~-------k~G~~-------~~A~~vf~~m~~----~d~~s~n~li~~~~~ 781 (1076)
++|..+++.+++. ...++..|..++..+. +.|++ ++|..+|++..+ .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4667788887774 2345677777777775 45885 999999997654 245689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHH-hcCCHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDAI--TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLG-KAGYLD 857 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~~--t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~-r~G~l~ 857 (1076)
.|+.++|..+|++..+ +.|+.. .|..+...+.+.|++++|.++|++..+. .| +...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 567643 7888888899999999999999999763 33 3444544444322 369999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcC---CCC-CchhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 858 EAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKL---EPC-NSANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 858 eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l---~P~-~~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
+|.++|++. . .+.+...|..++..+...|+.++|+.+++++++. .|+ ....+..++..+.+.|++++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 2 2346789999999999999999999999999985 554 566788999999999999999999999
Q ss_pred HHhCC
Q 038364 932 MDEVG 936 (1076)
Q Consensus 932 m~~~g 936 (1076)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87654
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.00 E-value=6e-09 Score=104.79 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=97.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcC
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAG 854 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G 854 (1076)
+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.++++++.+. ...+...+..+...|.+.|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3334444444444444444433311 112233444444444455555555555444432 1122344555555666666
Q ss_pred CHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 855 YLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 855 ~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
++++|.+.++++. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++.
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666665541 23456677788888888888888888888888888888888999999999999999999988887
Q ss_pred HhC
Q 038364 933 DEV 935 (1076)
Q Consensus 933 ~~~ 935 (1076)
.+.
T Consensus 171 ~~~ 173 (186)
T 3as5_A 171 NEL 173 (186)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.00 E-value=9.9e-10 Score=121.07 Aligned_cols=243 Identities=14% Similarity=0.090 Sum_probs=151.2
Q ss_pred ccchhhhhhhhhhcCChhHHHHHHHHhHhc-------CCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhc------CC
Q 038364 633 LVSWNSLVSGYSIWGQSKEALVIIHHMKNS-------GIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE------DI 699 (1076)
Q Consensus 633 ~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~-------gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~------gi 699 (1076)
..++..+...|...|++++|..+|+++.+. ........|..+...|...|++++|.+.+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345678888999999999999999998862 23345677889999999999999999999998764 22
Q ss_pred CC-ChhhHHHHHHHHhcCCCchhHHHHHHHHHHc------CCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC----
Q 038364 700 KP-NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKN------GFIK-DAYVATGLIDMYSKSGNLKSAREVFRKSANK---- 767 (1076)
Q Consensus 700 ~p-d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~------g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---- 767 (1076)
.| ...++..+...+...|++++|...+..+++. +..+ ....+..+...|.+.|++++|.+.|++..+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 23 3567888888999999999999999888764 1112 2345566666666777777766666554321
Q ss_pred ----C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc
Q 038364 768 ----T---LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI 840 (1076)
Q Consensus 768 ----d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~ 840 (1076)
+ ...|..+...|...|++++|++.|+++.+. .|+.. .....+..
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~---------------------------~~~~~~~~ 237 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHERE---------------------------FGSVDDEN 237 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHH---------------------------HC------
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhc---------------------------CCCCCcch
Confidence 1 124455555555555555555555555431 00000 00011111
Q ss_pred -------ccHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 841 -------EHYSCMVDLLGKAGYLDEAWDFIRTMP-FKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 841 -------~~y~~li~~l~r~G~l~eA~~l~~~m~-~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
..+..+...+...+.+.+|...++... ..| +..+|..+..+|...|++++|...+++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 111222333444555556666666653 233 3457888999999999999999999999988775
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.94 E-value=1.5e-07 Score=107.15 Aligned_cols=224 Identities=13% Similarity=0.038 Sum_probs=141.1
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHhhcCCHHHHHHHHHhcCC-------C----ChHHHHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFI-KD----AYVATGLIDMYSKSGNLKSAREVFRKSAN-------K----TLASWNC 774 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~-~d----~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~s~n~ 774 (1076)
..+...|+++.|...+....+..-. .+ ...+..+...|...|++++|.+.+++... + ....+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 3444455555555555444432100 01 12345566777777887777777765432 1 1234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHH-----H
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETGFQ--P--DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYS-----C 845 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g~~--P--d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~-----~ 845 (1076)
+...+...|++++|...+++..+..-. | ...++..+...+...|++++|..++++......-......+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 677778888888888888887653211 1 124566666677888888888888887754311111111122 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC------chhHHHHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMP-FKPD-----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN------SANYNLMM 913 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~-~~pd-----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~------~~~y~~L~ 913 (1076)
.+..+...|++++|...+++.. ..|. ...+..+...+...|++++|...++++++..+.. ...+..++
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3344778899999988888863 2221 2356677788888899999999998887653321 24677889
Q ss_pred HHHHHcCChHHHHHHHHHHHh
Q 038364 914 NLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 914 ~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.+|...|+.++|.+.+++..+
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999998888754
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.93 E-value=2.3e-08 Score=105.37 Aligned_cols=203 Identities=10% Similarity=0.021 Sum_probs=112.2
Q ss_pred ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHH
Q 038364 702 NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMG 778 (1076)
Q Consensus 702 d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~ 778 (1076)
|...+......+...|++++|...+..+++..-.++...+..+...|.+.|++++|.+.|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 34555555566666666666666666666643324445555566666666666666666665442 233456666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---cccHHHHH
Q 038364 779 FAIYGNGKEAILLFHELLETGFQPDAI--------TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT---IEHYSCMV 847 (1076)
Q Consensus 779 ~~~~g~~~~Al~l~~~M~~~g~~Pd~~--------t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~---~~~y~~li 847 (1076)
|...|++++|+..|++..+ ..|+.. .|..+-..+...|++++|.+.|++..+ +.|+ ...|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 6666666666666666665 334322 244444455566666666666666543 2343 33455555
Q ss_pred HHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 848 DLLGKAGYL--DEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 848 ~~l~r~G~l--~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
..|...|+. ++|..+. ..+...+..+. ....+++++|+..++++++++|+++.....+..+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 555444432 2221111 11222222222 22344568888888888888888876666665543
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.90 E-value=3e-08 Score=104.52 Aligned_cols=188 Identities=11% Similarity=-0.032 Sum_probs=107.8
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN----KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALL 811 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll 811 (1076)
|+..+..+...|.+.|++++|.+.|++..+ ++...|..+...+...|++++|+..|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 445566666666677777777776665432 4555555566666667777777777766665 44544 3455555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCC-c-------ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPT-I-------EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD---ATIWGALL 879 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~-------~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd---~~~~~~Ll 879 (1076)
..+...|++++|.+.+++..+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666777776666666543 232 2 33555555666666666666666554 34444 23455555
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
..+.. .+...++++..+.+.+...|..+ .....+.+++|.+.+++..+..
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 44432 33444555555555443333322 2333455689999998886543
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.89 E-value=3e-08 Score=99.61 Aligned_cols=168 Identities=13% Similarity=-0.001 Sum_probs=141.7
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAAC 814 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~ 814 (1076)
...+..+...|...|++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566788889999999999999998875 356788899999999999999999999998842 33556778888889
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHH
Q 038364 815 KNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 815 ~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.+++. . .+.+..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764 2345678888999999999999999999886 2 3346778999999999999999999
Q ss_pred HHHHHHhcCCCCCchh
Q 038364 893 IASRRLFKLEPCNSAN 908 (1076)
Q Consensus 893 ~~~~~l~~l~P~~~~~ 908 (1076)
..+++++++.|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998887543
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.84 E-value=5.3e-08 Score=115.37 Aligned_cols=208 Identities=10% Similarity=0.002 Sum_probs=118.8
Q ss_pred hhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCCh-hHHHHHHHHHhhcCCCC-ChhhHHHHHHHHhcCCCchhHHHHH
Q 038364 649 SKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENY-RESLKFFIQMQQEDIKP-NSTTMSSLLQTCGGLGLLQNGKEIH 726 (1076)
Q Consensus 649 ~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~-~eAl~l~~~m~~~gi~p-d~~t~~~lL~a~~~~g~~~~a~~i~ 726 (1076)
++++...+++.... ...+...|..+...|...|++ ++|++.|++..+. .| +...|..+..++...|++++|.+.+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444455444332 122455556666666666666 6666666666542 23 2445555555555555555555555
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhhc---------CCHHHHHHHHHhcC---CCChHHHHHHHHHHHHc--------CCHH
Q 038364 727 CLCLKNGFIKDAYVATGLIDMYSKS---------GNLKSAREVFRKSA---NKTLASWNCMIMGFAIY--------GNGK 786 (1076)
Q Consensus 727 ~~~~~~g~~~d~~~~~~Li~~y~k~---------G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~--------g~~~ 786 (1076)
..+++ ..|+...+..+...|... |++++|.+.|++.. ..+...|..+...|... |+++
T Consensus 161 ~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 55555 234445555566666666 66666666666543 23455666666666666 6677
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHH
Q 038364 787 EAILLFHELLETGFQP----DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWD 861 (1076)
Q Consensus 787 ~Al~l~~~M~~~g~~P----d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~ 861 (1076)
+|+..|++..+ +.| +...+..+..++...|++++|.+.|++..+. .|+ ...+..+..++...|++++|.+
T Consensus 239 ~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776666 344 4455666666666667777777766666543 233 3455566666666666666665
Q ss_pred HHHhC
Q 038364 862 FIRTM 866 (1076)
Q Consensus 862 l~~~m 866 (1076)
.+.++
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 55443
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.83 E-value=1.9e-07 Score=106.87 Aligned_cols=158 Identities=8% Similarity=0.014 Sum_probs=76.0
Q ss_pred HHHHhcCCChhHHHHHHHHHhhcCC-CCC----hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCC-----CC-ChhhHHH
Q 038364 675 ISGSLQNENYRESLKFFIQMQQEDI-KPN----STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGF-----IK-DAYVATG 743 (1076)
Q Consensus 675 I~~~~~~g~~~eAl~l~~~m~~~gi-~pd----~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~-----~~-d~~~~~~ 743 (1076)
...+...|++++|++.|++..+.-. .+| ..++..+...+...|+++.|...+..+++..- .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777654211 122 22344444555555555555555554443200 00 1234445
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCC-HHHHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAILLFHELLET---GFQPD-AITFTAL 810 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~---g~~Pd-~~t~~~l 810 (1076)
+...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+. ...|+ ..++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 55555566666665555544321 11 124445555555555555555555554430 00111 2334444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 038364 811 LAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 811 l~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
...+.+.|+.++|.+++++..+
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4445555555555555555443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.81 E-value=9.6e-08 Score=109.33 Aligned_cols=223 Identities=11% Similarity=-0.040 Sum_probs=166.0
Q ss_pred HHHhcCCCchhHHHHHHHHHHcCCC-C----ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC-----hHHHHHH
Q 038364 711 QTCGGLGLLQNGKEIHCLCLKNGFI-K----DAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT-----LASWNCM 775 (1076)
Q Consensus 711 ~a~~~~g~~~~a~~i~~~~~~~g~~-~----d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d-----~~s~n~l 775 (1076)
..+...|++++|...+..+.+..-. + ...++..+...|...|+++.|...+++..+ .+ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3456889999999999998864211 2 245778899999999999999988876542 12 3478889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC---CCCCCcccHHHHH
Q 038364 776 IMGFAIYGNGKEAILLFHELLET----GFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDY---NIIPTIEHYSCMV 847 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~----g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~---g~~p~~~~y~~li 847 (1076)
...|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|.++|++..+.. +.......+..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999988752 11111 2367777788999999999999999887611 1122256788899
Q ss_pred HHHHhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHHcCC---chHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 848 DLLGKAGYLDEAWDFIRTM----PF--KPDA-TIWGALLGSCRIHGH---LEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m----~~--~pd~-~~~~~Ll~a~~~~g~---~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
..|.+.|+.++|.+.+++. +. .|.. ..+..+...+...++ +++|...+++. ...|.....+..++.+|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 9999999999999999885 11 2332 345555556667777 77777777762 233444567889999999
Q ss_pred HcCChHHHHHHHHHHHh
Q 038364 918 MSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~ 934 (1076)
..|++++|.+.+++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999988743
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.78 E-value=4.3e-08 Score=105.92 Aligned_cols=221 Identities=18% Similarity=0.170 Sum_probs=156.7
Q ss_pred hcCCCchhHHHHHHHHHHc-------CCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-------C----ChHHHHHH
Q 038364 714 GGLGLLQNGKEIHCLCLKN-------GFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-------K----TLASWNCM 775 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~~~-------g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~s~n~l 775 (1076)
...|++++|...++..++. .......++..+...|...|++++|.+.|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4568888888888877653 1122466788899999999999999999987542 1 23578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-----CCCC-Cccc
Q 038364 776 IMGFAIYGNGKEAILLFHELLET------GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDY-----NIIP-TIEH 842 (1076)
Q Consensus 776 i~~~~~~g~~~~Al~l~~~M~~~------g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~-----g~~p-~~~~ 842 (1076)
...|...|++++|+..|++..+. .-.|+. .++..+...+...|++++|.++++++.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998863 112433 467778888999999999999999887531 1122 2557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHcCCchHHH------HHHHHHhcCCCCC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP----------FKPD-ATIWGALLGSCRIHGHLEYAE------IASRRLFKLEPCN 905 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~----------~~pd-~~~~~~Ll~a~~~~g~~e~A~------~~~~~l~~l~P~~ 905 (1076)
+..+...|.+.|++++|.+++++.. ..+. ...|..+.......+....+. ..++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999998751 1222 234444444444433333332 2233233334555
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 906 SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 906 ~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
...+..++.+|.+.|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998754
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.78 E-value=3.2e-07 Score=104.40 Aligned_cols=269 Identities=9% Similarity=-0.049 Sum_probs=152.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc----chhhhhhhhhhcCChhHHHHHHHHhHhcCC-CCc----hHHHHH
Q 038364 603 SLISGYCFKGLFVNAKKMLNQMEEEEIKPDLV----SWNSLVSGYSIWGQSKEALVIIHHMKNSGI-YPN----VVTWTS 673 (1076)
Q Consensus 603 ~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~----t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi-~pd----~~ty~~ 673 (1076)
.....+...|++++|...+++.....-..+.. .++.+...|...|++++|.+.+++..+... .++ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667788888888888876643111111 344555666677777777777776654100 011 122344
Q ss_pred HHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCC--C-ChhhHHHHHHHHhh
Q 038364 674 LISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI--K-DAYVATGLIDMYSK 750 (1076)
Q Consensus 674 LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~--~-d~~~~~~Li~~y~k 750 (1076)
+...+...|++++|.+.+++..... .+.+.. | ....+..+...|..
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLI-------------------------------NEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhccccCcHHHHHHHHHHHHHHH
Confidence 5555666666666666666554310 001111 1 12334445566666
Q ss_pred cCCHHHHHHHHHhcCC--C------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHHh
Q 038364 751 SGNLKSAREVFRKSAN--K------TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFT-----ALLAACKN 816 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~--~------d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~-----~ll~a~~~ 816 (1076)
.|++++|.+.+++... + ...+|..+...+...|++++|...+++.....-.++. ..+. .....+..
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 227 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence 6666666666654321 0 1235666677777778888887777776643111111 1111 22233667
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCHH-HHHHHHHHHHHc
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPT---IEHYSCMVDLLGKAGYLDEAWDFIRTMP-------FKPDAT-IWGALLGSCRIH 885 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~---~~~y~~li~~l~r~G~l~eA~~l~~~m~-------~~pd~~-~~~~Ll~a~~~~ 885 (1076)
.|+.++|..+++..... ...+. ...+..+..++...|+.++|.+.+++.. ..++.. .+..+..++...
T Consensus 228 ~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 228 TGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp TTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh
Confidence 88888888888776542 11111 1134567777888888888888777651 111222 455566778888
Q ss_pred CCchHHHHHHHHHhcCCC
Q 038364 886 GHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 886 g~~e~A~~~~~~l~~l~P 903 (1076)
|+.++|...+++++++.+
T Consensus 307 g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 307 GRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999988888876543
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.78 E-value=1.4e-07 Score=103.85 Aligned_cols=164 Identities=9% Similarity=-0.080 Sum_probs=98.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC------
Q 038364 740 VATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIY-GNGKEAILLFHELLETGFQPD------ 803 (1076)
Q Consensus 740 ~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~-g~~~~Al~l~~~M~~~g~~Pd------ 803 (1076)
+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 445555556666666666555554331 11 23566777777775 8888888888777652 221
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcc-----cHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---
Q 038364 804 -AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIE-----HYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDAT--- 873 (1076)
Q Consensus 804 -~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~-----~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~~--- 873 (1076)
..++..+...+...|++++|..+|++..+...-.+... .|..+..++...|++++|...+++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 23566667777888888888888887765321111111 3566677777788888888888775 3344321
Q ss_pred ---HHHHHHHHHH--HcCCchHHHHHHHHHhcCCCCC
Q 038364 874 ---IWGALLGSCR--IHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 874 ---~~~~Ll~a~~--~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
.+..++.++. ..+++++|+..++++.+++|.+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2344455554 3456777777777777777754
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.68 E-value=1.1e-07 Score=117.69 Aligned_cols=162 Identities=17% Similarity=0.214 Sum_probs=136.9
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLA 812 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~ 812 (1076)
+...++.|...|.+.|++++|.+.|++..+ .+...|+.+...|.+.|++++|++.|++..+ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 356788899999999999999999987653 4567899999999999999999999999988 56764 57888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCch
Q 038364 813 ACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e 889 (1076)
++...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...| +...|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 899999999999999988753 455 678899999999999999999999886 4455 4668999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 038364 890 YAEIASRRLFKLEP 903 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P 903 (1076)
+|++.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887644
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.67 E-value=4.4e-07 Score=97.80 Aligned_cols=182 Identities=10% Similarity=-0.007 Sum_probs=124.1
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC---C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH-HHHH
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRKSANK---T---LASWNCMIMGFAIYGNGKEAILLFHELLETGF-QPDA-ITFT 808 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d---~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd~-~t~~ 808 (1076)
+...+-.+...+.+.|++++|.+.|+++.+. + ...|..+...|.+.|++++|+..|++..+..- .|+. ..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4555666777778888888888888877642 2 45667777888888888888888888877311 1222 3444
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHhhhcCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 038364 809 ALLAACKN--------SGLVEEGWKYFDSMSTDYNIIPTI-EHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALL 879 (1076)
Q Consensus 809 ~ll~a~~~--------~g~~~eA~~~~~~m~~~~g~~p~~-~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll 879 (1076)
.+..++.. .|++++|...|+++.+.+ |+. .....+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555666 778888888888776642 332 2222221111111111 11256677
Q ss_pred HHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHHHHHHc----------CChHHHHHHHHHHHhCC
Q 038364 880 GSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMNLLAMS----------NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 880 ~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~y~~~----------G~~~eA~~~~~~m~~~g 936 (1076)
..+...|+++.|+..++++++..|++ +..+..++.+|... |++++|.+.+++..+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 88999999999999999999999985 45789999999877 99999999999986543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.67 E-value=1.1e-07 Score=104.72 Aligned_cols=199 Identities=12% Similarity=0.033 Sum_probs=143.4
Q ss_pred chhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CC----hHHHHHHHHHHHHcCCHHHHH
Q 038364 719 LQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-----KT----LASWNCMIMGFAIYGNGKEAI 789 (1076)
Q Consensus 719 ~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~s~n~li~~~~~~g~~~~Al 789 (1076)
+++|...+..+ ...|...|++++|.+.|++..+ .+ ..+|+.+...|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 66666666554 4567888999999988876542 12 357899999999999999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCCCCC----cccHHHHHHHHHhcCCHHHH
Q 038364 790 LLFHELLET----GFQPD-AITFTALLAACKNS-GLVEEGWKYFDSMSTDYNIIPT----IEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 790 ~l~~~M~~~----g~~Pd-~~t~~~ll~a~~~~-g~~~eA~~~~~~m~~~~g~~p~----~~~y~~li~~l~r~G~l~eA 859 (1076)
..|++..+. |-.+. ..++..+...|... |++++|...|++..+...-..+ ...+..+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999988762 21111 24677888889886 9999999999988753211111 34688899999999999999
Q ss_pred HHHHHhC-CCCCC---H-----HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh-----HHHHHHHHH--HcCChH
Q 038364 860 WDFIRTM-PFKPD---A-----TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN-----YNLMMNLLA--MSNRWE 923 (1076)
Q Consensus 860 ~~l~~~m-~~~pd---~-----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~-----y~~L~~~y~--~~G~~~ 923 (1076)
.+.+++. ...|+ . ..|..+..++...|+++.|+..+++.++++|+.... +..+...|. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999986 22222 1 156777888999999999999999999999986543 334556664 457788
Q ss_pred HHHHHHHHH
Q 038364 924 DVERLRHSM 932 (1076)
Q Consensus 924 eA~~~~~~m 932 (1076)
+|.+.++++
T Consensus 258 ~A~~~~~~~ 266 (292)
T 1qqe_A 258 EHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHhccC
Confidence 988888665
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.63 E-value=5.4e-07 Score=97.14 Aligned_cols=223 Identities=14% Similarity=0.100 Sum_probs=125.3
Q ss_pred hcCChhHHHHHHHHhHhc-------CCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhc------CCCCChhhHHHHHH
Q 038364 645 IWGQSKEALVIIHHMKNS-------GIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQE------DIKPNSTTMSSLLQ 711 (1076)
Q Consensus 645 k~g~~~~A~~lf~~m~~~-------gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~------gi~pd~~t~~~lL~ 711 (1076)
..|++++|..+|++..+. ........|..+...|...|++++|++.+++..+. +-.|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------- 82 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP---------- 82 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH----------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch----------
Confidence 456667777666665431 11223456666777777777777777777766532 1111
Q ss_pred HHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC-------C----ChHHHHHHHHHHH
Q 038364 712 TCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN-------K----TLASWNCMIMGFA 780 (1076)
Q Consensus 712 a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~s~n~li~~~~ 780 (1076)
....++..+...|...|++++|.+.|++..+ + ....|..+...|.
T Consensus 83 ------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 83 ------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 1223444555555555555555555554321 1 1235666667777
Q ss_pred HcCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcC------CCCCCc-ccHHHH
Q 038364 781 IYGNGKEAILLFHELLET------GFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDY------NIIPTI-EHYSCM 846 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~------g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~------g~~p~~-~~y~~l 846 (1076)
..|++++|+..|++..+. +-.|+. .++..+...+...|++++|.+++++..+.. ...+.. ..|..+
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHA 218 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 777777777777776653 113332 356667777778888888888887766420 122332 233333
Q ss_pred HHHHHhc------CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcC
Q 038364 847 VDLLGKA------GYLDEAWDFIRTMP-FKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 847 i~~l~r~------G~l~eA~~l~~~m~-~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l 901 (1076)
...+... ..+.++...++... ..|+ ..+|..+...+...|++++|...+++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 219 EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333332 23445555555553 2233 347888889999999999999999998875
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.63 E-value=2.9e-07 Score=86.62 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=62.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
+..++..+.+.|++++|.++++++. .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 117 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 3344444444444444444444431 12345566677777777788888888888888888877778888888888888
Q ss_pred ChHHHHHHHHHHHhC
Q 038364 921 RWEDVERLRHSMDEV 935 (1076)
Q Consensus 921 ~~~eA~~~~~~m~~~ 935 (1076)
++++|.+.++++.+.
T Consensus 118 ~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 118 DYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcc
Confidence 888888888877554
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.60 E-value=4.8e-07 Score=97.46 Aligned_cols=202 Identities=11% Similarity=0.016 Sum_probs=145.8
Q ss_pred ChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCC---hhhHHHHHHHHhhcCCHHHHHHHHHhcCC--C-C---hHHH
Q 038364 702 NSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKD---AYVATGLIDMYSKSGNLKSAREVFRKSAN--K-T---LASW 772 (1076)
Q Consensus 702 d~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d---~~s~ 772 (1076)
+...+..+...+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | + ...|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45667777778889999999999999998853 222 56778899999999999999999998764 2 1 3467
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccH
Q 038364 773 NCMIMGFAI--------YGNGKEAILLFHELLETGFQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHY 843 (1076)
Q Consensus 773 n~li~~~~~--------~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y 843 (1076)
..+..++.. .|++++|+..|++..+ ..|+.. .... ...+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a--------------~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDA--------------TQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 778888888 9999999999999998 356542 1111 1111111110 01225
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCchHHHHHHHHHhcCCCCCc--
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIH----------GHLEYAEIASRRLFKLEPCNS-- 906 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~----------g~~e~A~~~~~~l~~l~P~~~-- 906 (1076)
..+...|.+.|++++|...+++. ...|+ ...|..+..++... |++++|+..++++++..|+++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778889999999999988876 22233 34677777777765 889999999999999999985
Q ss_pred -hhHHHHHHHHHHcCChHHH
Q 038364 907 -ANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 907 -~~y~~L~~~y~~~G~~~eA 925 (1076)
.++..+..++.+.|+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 3455666666666655443
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.58 E-value=1.2e-06 Score=92.28 Aligned_cols=180 Identities=9% Similarity=0.015 Sum_probs=120.4
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN--KT----LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI----TF 807 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d----~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~----t~ 807 (1076)
...+..+...|.+.|++++|.+.|+++.+ |+ ...|..+..+|.+.|++++|+..|++..+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455567778888999999998887763 22 246777888888899999999999888873 44432 23
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHhhhcCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038364 808 TALLAACKN------------------SGLVEEGWKYFDSMSTDYNIIPTIE-HYSCMVDLLGKAGYLDEAWDFIRTMPF 868 (1076)
Q Consensus 808 ~~ll~a~~~------------------~g~~~eA~~~~~~m~~~~g~~p~~~-~y~~li~~l~r~G~l~eA~~l~~~m~~ 868 (1076)
..+..++.. .|+.++|...|+++.+. .|+.. .+.... +.+.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~----~l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATK----RLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHH----HHHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHH----HHHHHHHHH--------
Confidence 333333332 35666666666666543 23321 111111 100000000
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 038364 869 KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS---ANYNLMMNLLAMSNRWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~---~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~ 937 (1076)
......+...+...|+++.|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00123455678899999999999999999999876 5699999999999999999999999977653
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.56 E-value=4.9e-06 Score=90.92 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=37.2
Q ss_pred CHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcC----------CCCCchhHHHHHHHHHHcCChH
Q 038364 855 YLDEAWDFIRTMP-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKL----------EPCNSANYNLMMNLLAMSNRWE 923 (1076)
Q Consensus 855 ~l~eA~~l~~~m~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l----------~P~~~~~y~~L~~~y~~~G~~~ 923 (1076)
+.++|..+|+++. ..|+..+-..|++++.+.|++++|+..++.+.+. +|+++.++..++.+....|+
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-- 270 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-- 270 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence 4444555554441 2233122222333455555555555555554443 35555555555555555554
Q ss_pred HHHHHHHHHHh
Q 038364 924 DVERLRHSMDE 934 (1076)
Q Consensus 924 eA~~~~~~m~~ 934 (1076)
+|.++++++++
T Consensus 271 ~a~~l~~qL~~ 281 (310)
T 3mv2_B 271 DTEDLTNQLVK 281 (310)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.56 E-value=8.7e-07 Score=83.31 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
.|..+...+...|++++|+.+|+++.+.. ..+...+..+...+...|++++|.++++++.... ..+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 45666677777777777777777776632 2244556666666777777788877777776531 22345667777788
Q ss_pred HhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC
Q 038364 851 GKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
.+.|++++|.+.++++. .+.+..+|..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888877762 2345677888888888889999999999888888775
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=1e-07 Score=93.71 Aligned_cols=135 Identities=13% Similarity=-0.008 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA 859 (1076)
.|+.++|+..+++... ..|+. ..+..+...|...|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++|
T Consensus 10 ~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 10 KADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchHHH
Confidence 3444444444444332 22222 12333444455555555555555555432 232 44556666666666666666
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHH-HHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 860 WDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIA-SRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 860 ~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~-~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
...+++. ...| +..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++.+.|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666664 2334 466888888889999998776654 589999999999999999999988875
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=5.5e-06 Score=90.51 Aligned_cols=241 Identities=14% Similarity=0.077 Sum_probs=158.6
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhH
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNG 722 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a 722 (1076)
....|++..+..-...+.. ..++ ..---+.++|...|+++.. ..-.|....+..+. .+...+ +
T Consensus 23 ~fy~G~yq~~i~e~~~~~~--~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK--VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC--CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc--cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----H
Confidence 3446777766653322211 1122 2222334666666766531 11223332333333 333322 5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 723 KEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK-----TLASWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 723 ~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
...++.+++.+ .++......+..+|...|++++|.+++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666665544 345555568889999999999999999987443 345677888999999999999999999988
Q ss_pred CCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 038364 798 TGFQP-----DAITFTALLAA--CKNSG--LVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP- 867 (1076)
Q Consensus 798 ~g~~P-----d~~t~~~ll~a--~~~~g--~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~- 867 (1076)
..| +..+...+..+ ....| +.++|..+|+++..+ .|+......+..++.+.|++++|++.++.+.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 577 35666666666 33334 899999999999765 3442233344458899999999999997652
Q ss_pred C----------CC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 868 F----------KP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 868 ~----------~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
. .| |+.+...++......|+ .|.++.+++.+..|+++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 1 14 45566567666667786 8899999999999998643
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=8e-07 Score=97.57 Aligned_cols=173 Identities=9% Similarity=-0.052 Sum_probs=132.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 038364 755 KSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 755 ~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
+...+.++.....+...+..+...+...|+.++|+..|++..+ ..|+. ..+..+...+...|+.++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444444444444555666777788888899999999988887 45654 46777777888899999999998887643
Q ss_pred CCCCCCcccHHH-HHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC--chh
Q 038364 834 YNIIPTIEHYSC-MVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN--SAN 908 (1076)
Q Consensus 834 ~g~~p~~~~y~~-li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~--~~~ 908 (1076)
.|+...... ....+.+.|+.++|.+.+++. .. +.+...+..+...+...|++++|+..++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455432222 223366777888888888775 23 3457789999999999999999999999999999988 788
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 038364 909 YNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 909 y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+..|+.+|...|+.++|...+++.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999999999998887764
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.51 E-value=4.5e-07 Score=112.40 Aligned_cols=144 Identities=13% Similarity=-0.052 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVD 848 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~ 848 (1076)
.|..+...|.+.|++++|+..|++..+ ..|+. ..+..+..++...|++++|.+.|++..+. .|+ ...|..+..
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLALAA 509 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHH
Confidence 344444444444444444444444444 22322 23333444444444444444444444332 222 334444444
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
+|.+.|++++ .+.+++. ...| +...|..+..++...|++++|+..++++++++|++..+|..++.+|...|
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 5555555555 4444443 1122 33445555555555555555555555555555555555555555554433
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.47 E-value=5.6e-05 Score=89.48 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAA-CKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a-~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
..|-..+..+.+++..+.|..+|++. ... ..+...|...... +...++.+.|+.+|+...+.++- ++..+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 45666677776777788888888887 311 1233333321111 12233688888888888775432 2344566777
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 849 LLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7778888888888888873 346677777776677777777776666654
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.45 E-value=7.2e-05 Score=88.55 Aligned_cols=198 Identities=13% Similarity=0.089 Sum_probs=124.7
Q ss_pred HHHHHhhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhc
Q 038364 586 AQEVFDNMKN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNS 662 (1076)
Q Consensus 586 A~~lf~~m~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~ 662 (1076)
+..+|++... .+...|-..+.-+.+.|+.++|.++|++.... |+...+.. .|+...+.++. ++.+.+.
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~ 268 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHH
Confidence 4445555443 34667777777788888888888888888876 54432211 23332222222 3332221
Q ss_pred C---------C---CCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHH--HHHHHHhcCCCchhHHHHHHH
Q 038364 663 G---------I---YPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMS--SLLQTCGGLGLLQNGKEIHCL 728 (1076)
Q Consensus 663 g---------i---~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~--~lL~a~~~~g~~~~a~~i~~~ 728 (1076)
- . ......|-..+..+.+.+..+.|..+|.+. ... ..+...|. +.+.... .++.+.|+.+++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHH
Confidence 0 0 112355777777777788899999999988 321 12333333 2222222 2368889999988
Q ss_pred HHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 038364 729 CLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 729 ~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
.++. +..++..+...++...+.|+.+.|+.+|++.. +....|...+.--..+|+.+.+.++++++..
T Consensus 346 al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8875 33345556667888888899999999999884 4567788888777778888888777777664
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.42 E-value=4.8e-07 Score=88.82 Aligned_cols=119 Identities=14% Similarity=0.025 Sum_probs=100.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCch
Q 038364 813 ACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLE 889 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e 889 (1076)
.+...|++++|...+..... ..|+ ...+..+..+|.+.|++++|++.|++. ...| +..+|..+...+...|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34566889999998888753 3444 556778999999999999999999987 3444 5779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHH-HHHHHh
Q 038364 890 YAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERL-RHSMDE 934 (1076)
Q Consensus 890 ~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~-~~~m~~ 934 (1076)
+|+..++++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887765 466644
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.41 E-value=1.6e-06 Score=105.09 Aligned_cols=158 Identities=12% Similarity=0.052 Sum_probs=122.9
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 038364 751 SGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKY 826 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~ 826 (1076)
.|++++|.+.|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999988764 3567899999999999999999999999998 4565 46788888889999999999999
Q ss_pred HHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CCchHHHHHHHHHhc
Q 038364 827 FDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIH---GHLEYAEIASRRLFK 900 (1076)
Q Consensus 827 ~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~---g~~e~A~~~~~~l~~ 900 (1076)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ... .+...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998764 344 678889999999999999999999986 333 4567889999999999 999999999999999
Q ss_pred CCCCCchhHHHHH
Q 038364 901 LEPCNSANYNLMM 913 (1076)
Q Consensus 901 l~P~~~~~y~~L~ 913 (1076)
.+|++...|..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888777
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.40 E-value=9.1e-06 Score=84.67 Aligned_cols=162 Identities=7% Similarity=-0.104 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhhhcCCCCCCccc
Q 038364 767 KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSG----LVEEGWKYFDSMSTDYNIIPTIEH 842 (1076)
Q Consensus 767 ~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g----~~~eA~~~~~~m~~~~g~~p~~~~ 842 (1076)
.+..++..+...|...++.++|+++|++..+.| +...+..|-..|.. + +.++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355566666666666677777777777776654 33444444444555 5 677777777776542 24556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 843 YSCMVDLLGK----AGYLDEAWDFIRTMP-FKPD---ATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 843 y~~li~~l~r----~G~l~eA~~l~~~m~-~~pd---~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
+..|..+|.. .+++++|.+++++.- ..|+ ...+..|...|.. .+|.++|+..++++.++ |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6666777766 778888888888763 3342 6778888888887 78899999999999888 66778899
Q ss_pred HHHHHHHHc-C-----ChHHHHHHHHHHHhCCC
Q 038364 911 LMMNLLAMS-N-----RWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 911 ~L~~~y~~~-G-----~~~eA~~~~~~m~~~g~ 937 (1076)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999765 3 79999999999877763
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.40 E-value=1.1e-06 Score=86.46 Aligned_cols=102 Identities=11% Similarity=-0.026 Sum_probs=89.8
Q ss_pred CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHH
Q 038364 835 NIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNL 911 (1076)
Q Consensus 835 g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~ 911 (1076)
.+.|+ ...+..+...|.+.|++++|.+.|++. ... .+...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44554 557778888999999999999999887 333 467799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++.+|.+.|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987654
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.37 E-value=3.1e-06 Score=93.73 Aligned_cols=154 Identities=12% Similarity=-0.002 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cc
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETG---FQPD--AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IE 841 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g---~~Pd--~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~ 841 (1076)
+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.++|++..+.+.-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 55666677777777777777777655420 1122 2355666666766 8888888888776543111111 35
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh-----
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTMP-F---KPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN----- 908 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m~-~---~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~----- 908 (1076)
.+..+...|.+.|++++|.+.+++.. + .++ ...|..+...+...|++++|...+++.+ ++|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 67778888889999999988888751 1 122 2256666677778899999999999999 99876533
Q ss_pred HHHHHHHHHHcCChHHHHH
Q 038364 909 YNLMMNLLAMSNRWEDVER 927 (1076)
Q Consensus 909 y~~L~~~y~~~G~~~eA~~ 927 (1076)
...++..| ..|+.+++.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 33445545 5677665555
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.35 E-value=2.2e-06 Score=86.35 Aligned_cols=156 Identities=11% Similarity=-0.004 Sum_probs=96.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNS 817 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~ 817 (1076)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..+ ..|+.. +..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~---- 81 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAK---- 81 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHH----
Confidence 33455556666666666666665543 2344555555556666666666666555544 223221 1111100
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIAS 895 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~ 895 (1076)
+. +.+.+...+|.+.+++. ...| +...|..+...+...|++++|+..+
T Consensus 82 -----------------------------~~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 82 -----------------------------LE-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp -----------------------------HH-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------HH-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00 01111112344444443 2234 5678888889999999999999999
Q ss_pred HHHhcCCCCC--chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 896 RRLFKLEPCN--SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 896 ~~l~~l~P~~--~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
+++++++|+. +..+..++.+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 9999999875 5588999999999999999998888753
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.34 E-value=8.9e-06 Score=100.71 Aligned_cols=193 Identities=15% Similarity=0.044 Sum_probs=144.3
Q ss_pred hcCCCchhHHHHHHHHH--------HcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHc
Q 038364 714 GGLGLLQNGKEIHCLCL--------KNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIY 782 (1076)
Q Consensus 714 ~~~g~~~~a~~i~~~~~--------~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~ 782 (1076)
...+++++|.+.++.++ +. ...+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 55667777777777666 21 233556778888899999999999999987763 4677899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHH
Q 038364 783 GNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAW 860 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~ 860 (1076)
|++++|++.|++..+ +.|+. ..+..+..++...|++++ .+.|++..+. .|+ ...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998 46654 567788888999999999 9999998763 454 568889999999999999999
Q ss_pred HHHHhC-CCCCCH-HHHHHHHHHHHHcCC-----chHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 861 DFIRTM-PFKPDA-TIWGALLGSCRIHGH-----LEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 861 ~l~~~m-~~~pd~-~~~~~Ll~a~~~~g~-----~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
+.+++. ...|+. ..|..+..++...++ .+...++.+.+.++.++++..+....
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 999997 466764 577777777766555 34445555555566666555544433
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.32 E-value=1.5e-06 Score=85.06 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=85.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|...|++. .. +.+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 456677788889999999999999886 23 3467789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.+++..+..
T Consensus 101 ~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 9999999999999986543
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.32 E-value=6.4e-06 Score=85.15 Aligned_cols=123 Identities=9% Similarity=-0.093 Sum_probs=97.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcC
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHG 886 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g 886 (1076)
.+...+...|++++|.+.|++. +.|+...|..+...|.+.|++++|.+.+++. . .+.+...|..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444566677777777777655 2456667777777777888888888777765 2 2345678888899999999
Q ss_pred CchHHHHHHHHHhcCCCCCc----------------hhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 887 HLEYAEIASRRLFKLEPCNS----------------ANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~----------------~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++++|+..+++++++.|++. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999888877 889999999999999999999999987654
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.31 E-value=5.1e-06 Score=86.23 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=109.6
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCC---hHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-H
Q 038364 746 DMYSKSGNLKSAREVFRKSANKT---LASWNC----------------MIMGFAIYGNGKEAILLFHELLETGFQPDA-I 805 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~~m~~~d---~~s~n~----------------li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~ 805 (1076)
..+.+.|++++|...|++..+.+ ...|.. +...|.+.|++++|+..|++..+ +.|+. .
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
Confidence 34445566666666655544322 223444 88889999999999999999988 46654 5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGY--LDEAWDFIRTMPFKPDA--TIWGALLG 880 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~--l~eA~~l~~~m~~~pd~--~~~~~Ll~ 880 (1076)
.+..+...+...|++++|.+.|++..+. .|+ ...|..+...|...|. .+++...++... .|+. ..|..+..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 7777888899999999999999998764 454 6678888888876654 445566666553 3443 34555666
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
++...|++++|+..+++++++.|++
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6778899999999999999999974
No 111
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.31 E-value=1.7e-05 Score=86.98 Aligned_cols=163 Identities=9% Similarity=-0.056 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cc
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-----ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IE 841 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-----~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~ 841 (1076)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|.+.+++..+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455667778888888888888877764322111 12233444567778899999888887643211112 34
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC------Cc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTMP----FKPD-----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC------NS 906 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m~----~~pd-----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~------~~ 906 (1076)
.|+.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|+..+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77888888999999999988887752 1222 257888889999999999999999999876432 14
Q ss_pred hhHHHHHHHHHHcCChHHH-HHHHHHHH
Q 038364 907 ANYNLMMNLLAMSNRWEDV-ERLRHSMD 933 (1076)
Q Consensus 907 ~~y~~L~~~y~~~G~~~eA-~~~~~~m~ 933 (1076)
..|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6789999999999999999 77677653
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.30 E-value=2e-06 Score=81.64 Aligned_cols=95 Identities=12% Similarity=0.028 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
..+.-....|.+.|++++|++.|++. .. +.+...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45556677777777777777777775 22 33566777777888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhC
Q 038364 919 SNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 919 ~G~~~eA~~~~~~m~~~ 935 (1076)
.|++++|.+.+++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88888888888877543
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.30 E-value=5.2e-06 Score=100.51 Aligned_cols=144 Identities=11% Similarity=-0.025 Sum_probs=83.2
Q ss_pred CCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHH
Q 038364 717 GLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFH 793 (1076)
Q Consensus 717 g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~ 793 (1076)
|++++|.+.++.+++. ...+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5666677776666653 122356666677777777777777777776543 244566777777777777777777777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhc---CCHHHHHHHHHhC
Q 038364 794 ELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKA---GYLDEAWDFIRTM 866 (1076)
Q Consensus 794 ~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~---G~l~eA~~l~~~m 866 (1076)
+..+. .|+ ...+..+..++...|++++|.+.|++..+. .| +...+..+...+.+. |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77663 343 345666666677777777777777776553 23 245666677777777 7777777776664
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.26 E-value=4e-05 Score=84.01 Aligned_cols=159 Identities=9% Similarity=-0.008 Sum_probs=110.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC----cccHHH
Q 038364 775 MIMGFAIYGNGKEAILLFHELLETG-FQPDAI----TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT----IEHYSC 845 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~~g-~~Pd~~----t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~----~~~y~~ 845 (1076)
.+..+...|++++|+.++++..+.. ..|+.. .+..+...+...|++++|.+.|+...+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566677777777777777776532 122211 2223444566667888888888877653111222 225777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC------chhHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMP-----F---KPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN------SANYN 910 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~-----~---~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~------~~~y~ 910 (1076)
+...|.+.|++++|.+.++++- . .+. ..+|..+...|...|++++|+..+++++++.++. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888887777652 1 122 2378888899999999999999999998865433 56799
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHH
Q 038364 911 LMMNLLAMSNR-WEDVERLRHSMD 933 (1076)
Q Consensus 911 ~L~~~y~~~G~-~~eA~~~~~~m~ 933 (1076)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888764
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.25 E-value=8.1e-06 Score=85.81 Aligned_cols=185 Identities=12% Similarity=-0.021 Sum_probs=131.4
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCC-C-ChhhHHHHHHHHhhcCCHHHHHHHHHhcCC--CC-h---HHHHH
Q 038364 703 STTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFI-K-DAYVATGLIDMYSKSGNLKSAREVFRKSAN--KT-L---ASWNC 774 (1076)
Q Consensus 703 ~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~-~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d-~---~s~n~ 774 (1076)
...+..+...+...|++++|...++.+++..-. + ....+..+...|.+.|++++|.+.|++..+ |+ . ..|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555667788899999999999999985322 1 135677889999999999999999998763 22 2 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 038364 775 MIMGFAI------------------YGNGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGLVEEGWKYFDSMSTDYN 835 (1076)
Q Consensus 775 li~~~~~------------------~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~eA~~~~~~m~~~~g 835 (1076)
+..++.. .|+.++|+..|+++.+ ..|+... ..... .. ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~----~l------~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK----RL------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH----HH------HHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH----HH------HHHHHHHH----
Confidence 5555544 5789999999999998 4676532 21111 00 01111111
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 836 IIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA----TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 836 ~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~----~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
.....+...|.+.|++++|...++++ ...|+. ..+..+..++...|+.++|+..++++....|++.++
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678899999999999999886 233432 468888999999999999999999999999987654
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.22 E-value=1.9e-06 Score=95.53 Aligned_cols=171 Identities=11% Similarity=0.011 Sum_probs=127.6
Q ss_pred cCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 038364 751 SGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLET----GFQPD-AITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~----g~~Pd-~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
.+++++|...|.+. ...|...|++++|+..|.+..+. |-.+. ..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 46777777766543 45677778888888877776642 21111 2367777788999999999999
Q ss_pred HHHHhhhcC---CCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCCchHHHH
Q 038364 826 YFDSMSTDY---NIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTMP-F---KPD----ATIWGALLGSCRIHGHLEYAEI 893 (1076)
Q Consensus 826 ~~~~m~~~~---g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~---~pd----~~~~~~Ll~a~~~~g~~e~A~~ 893 (1076)
.|++..+.+ |-.. ...++..+..+|.+ |++++|++.+++.- + ..+ ..++..+...+...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998876532 1111 14577888899988 99999999998751 1 111 4578888999999999999999
Q ss_pred HHHHHhcCCCCCc------hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 894 ASRRLFKLEPCNS------ANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 894 ~~~~l~~l~P~~~------~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
.+++++++.|++. ..+..++.++...|++++|.+.+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999999866543 357778888999999999999999985
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.22 E-value=5.7e-06 Score=78.43 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=83.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHH
Q 038364 800 FQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIW 875 (1076)
Q Consensus 800 ~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~ 875 (1076)
+.|+.. .+...-..+.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++. .+ +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 344442 4455555666777777777777766543 23 3556777777777778888877777775 23 3456789
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 876 GALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 876 ~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
..+..++...|++++|+..++++++++|++..++..|.+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999988888777653
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=8.8e-06 Score=78.60 Aligned_cols=96 Identities=14% Similarity=-0.040 Sum_probs=83.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.+.|++. .. +.+...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345556777888889999998888876 22 3467789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhC
Q 038364 918 MSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~ 935 (1076)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998654
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.19 E-value=1.3e-05 Score=80.54 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=91.2
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcCCC--ChHHHHHHHHH-HHH
Q 038364 705 TMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSANK--TLASWNCMIMG-FAI 781 (1076)
Q Consensus 705 t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--d~~s~n~li~~-~~~ 781 (1076)
.+......+...|++++|...++.+++. .+.+...+..+...|.+.|++++|.+.|++.... +...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 4556667788999999999999887763 1235678889999999999999999999988653 33322222111 112
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC---cccHHHHHHHHHhcCCHH
Q 038364 782 YGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT---IEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~---~~~y~~li~~l~r~G~l~ 857 (1076)
.+...+|+..|++..+ ..|+ ...+..+...+...|++++|...|+++.+. .|+ ...+..+...|...|+.+
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCCC
Confidence 1222235566666655 3443 344455555555666666666666555432 222 223444444444444444
Q ss_pred HHHHHHH
Q 038364 858 EAWDFIR 864 (1076)
Q Consensus 858 eA~~l~~ 864 (1076)
+|...++
T Consensus 162 ~A~~~y~ 168 (176)
T 2r5s_A 162 AIASKYR 168 (176)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 4444443
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.18 E-value=4.5e-06 Score=91.22 Aligned_cols=190 Identities=9% Similarity=-0.029 Sum_probs=129.9
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSA---NKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAA 813 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a 813 (1076)
...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.|++++|+..+++..+ +.|+. ..+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 4456667778888888888888887654 23667788888888888888888888888887 45554 567777778
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDATIWGALLGSCRIHGHLEYAE 892 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~ 892 (1076)
+...|++++|.+.|+...+. .|+ ...+...+....+..+..+... .......++..+...+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 88889999999888877653 222 1122222222222222111111 2223344455544444 333 368999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHc-CChHHHHHHHHHHHhC
Q 038364 893 IASRRLFKLEPCNSANYNLMMNLLAMS-NRWEDVERLRHSMDEV 935 (1076)
Q Consensus 893 ~~~~~l~~l~P~~~~~y~~L~~~y~~~-G~~~eA~~~~~~m~~~ 935 (1076)
..++++++++|++......+..++.+. +++++|.+++.+..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777788888877 7799999999988653
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.18 E-value=1.5e-05 Score=73.70 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCR 883 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~ 883 (1076)
.+..+...+...|++++|.++++++.+.. ..+...+..+...+.+.|++++|..+++++. .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 34444444555555555555555554321 1223455555666666666666666665541 2345667888888888
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcC
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSN 920 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G 920 (1076)
..|++++|...++++++++|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8899999999999999999988888888888876654
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=1.4e-05 Score=78.45 Aligned_cols=125 Identities=10% Similarity=-0.068 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHc
Q 038364 808 TALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIH 885 (1076)
Q Consensus 808 ~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~ 885 (1076)
..+...+...|++++|...|+...+. ...+...+..+...+.+.|++++|.+.+++. . .+.+...|..+..++...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 33344455555555555555555432 1123445556666666666666666666654 1 233566888888899999
Q ss_pred CCchHHHHHHHHHhcCCCCCchhHHHH--HHHHHHcCChHHHHHHHHHHHh
Q 038364 886 GHLEYAEIASRRLFKLEPCNSANYNLM--MNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 886 g~~e~A~~~~~~l~~l~P~~~~~y~~L--~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
|++++|...+++++++.|++...+..+ +..+.+.|++++|.+.+++..+
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999988877544 4448888999999999887643
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.16 E-value=1.3e-05 Score=87.87 Aligned_cols=132 Identities=11% Similarity=-0.031 Sum_probs=111.3
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 038364 802 PDA-ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDATIWGAL 878 (1076)
Q Consensus 802 Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~~~~~~L 878 (1076)
|+. ..+..+...+...|++++|...|++..+. .|+ ...+..+..+|.+.|++++|.+.+++.. ..|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 444 45666777789999999999999998764 454 6688899999999999999999999984 56776644444
Q ss_pred HH-HHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 879 LG-SCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 879 l~-a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
.. .+...++.+.|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 43 36778899999999999999999999999999999999999999999999996644
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.15 E-value=3e-05 Score=79.98 Aligned_cols=146 Identities=12% Similarity=-0.018 Sum_probs=98.3
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 038364 740 VATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGL 819 (1076)
Q Consensus 740 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 819 (1076)
.+..+...|.+.|++++|.+.|++..+++...|..+...|...|++++|+..|++..+.. ..+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344566777778888888888887777777777777777888888888888887777632 2233456666666777777
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 820 VEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPD-ATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
+++|.+.|+...+...-.+... | ...| +...|+ ...|..+..++...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~-~-------~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID-Y-------KILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE-C-------GGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH-H-------HHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777655311111000 0 0000 012232 357888888999999999999999999
Q ss_pred hcCCCCC
Q 038364 899 FKLEPCN 905 (1076)
Q Consensus 899 ~~l~P~~ 905 (1076)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9999975
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.15 E-value=0.00019 Score=78.98 Aligned_cols=210 Identities=12% Similarity=0.131 Sum_probs=139.5
Q ss_pred hhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHH----HHc---CCHH
Q 038364 720 QNGKEIHCLCLKNGFIKD-AYVATGLIDMYSKSG--NLKSAREVFRKSAN---KTLASWNCMIMGF----AIY---GNGK 786 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~d-~~~~~~Li~~y~k~G--~~~~A~~vf~~m~~---~d~~s~n~li~~~----~~~---g~~~ 786 (1076)
++|....+.+++ +.|+ ..+++.--..+...| +++++.+.++.+.. ++...|+--...+ ... ++.+
T Consensus 50 ~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 345555555554 2332 334455555555555 77777777776553 3445666433333 344 6778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCC------HHH
Q 038364 787 EAILLFHELLETGFQPDAITFTALLAACKNSGLVE--EGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY------LDE 858 (1076)
Q Consensus 787 ~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~--eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~------l~e 858 (1076)
+++++++++.+.. .-|...|..-...+.+.|.++ ++.++++++.+.. .-+...|+.-..++.+.|+ +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888887732 234456666666666777776 7888888877641 1234455555555666665 888
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchH-HHHHHHHHhcCC---CCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 859 AWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEY-AEIASRRLFKLE---PCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 859 A~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~-A~~~~~~l~~l~---P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+++.++++ . .+-|...|+-+...+.+.|+... ...+++++++++ |.++.+...++++|.+.|+.++|.++++++
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888776 2 34577889888888888887444 566778887776 778888899999999999999999999998
Q ss_pred Hh
Q 038364 933 DE 934 (1076)
Q Consensus 933 ~~ 934 (1076)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.13 E-value=1.6e-05 Score=74.11 Aligned_cols=115 Identities=8% Similarity=-0.082 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCR 883 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~ 883 (1076)
.+..+...+...|++++|.+.|++..+.. ..+...+..+...+...|++++|.+.+++. . .+.+...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 34444444555566666666655554421 123445556666666666666666666654 1 2234667888888889
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCCh
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRW 922 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~ 922 (1076)
..|++++|...+++++++.|+++..+..++.++.+.|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999988999999999888875
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.09 E-value=1.7e-05 Score=74.54 Aligned_cols=112 Identities=9% Similarity=-0.041 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCR 883 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~ 883 (1076)
+..+...+...|++++|.+.|++..+. .| +...+..+...|.+.|++++|.+.+++. . .+.+...|..+..++.
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 334444444445555555544444321 12 2344445555555555555555555553 1 1234567777888888
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCC
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNR 921 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~ 921 (1076)
..|++++|+..++++++++|++...+..++.+|.+.|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888877664
No 128
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.07 E-value=4.3e-05 Score=79.15 Aligned_cols=158 Identities=9% Similarity=0.066 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHHHhcCCHHHHHHHHHHhhhcC
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQPDAI-TFTA----------------LLAACKNSGLVEEGWKYFDSMSTDY 834 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-t~~~----------------ll~a~~~~g~~~eA~~~~~~m~~~~ 834 (1076)
+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 33455677889999999999999998 567654 4555 677889999999999999998764
Q ss_pred CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC--chHHHHHHHHHhcCCCCCchhH
Q 038364 835 NIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGH--LEYAEIASRRLFKLEPCNSANY 909 (1076)
Q Consensus 835 g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~--~e~A~~~~~~l~~l~P~~~~~y 909 (1076)
.|+ ...+..+..+|...|++++|.+.+++. ...| +...|..+...+...|+ .+.+...++++....|.. ..+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 454 678889999999999999999999987 3444 56788888888766554 445566666665443322 245
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 910 NLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 910 ~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..++..+...|++++|.+.+++..+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66788888899999999999998543
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.06 E-value=1.8e-05 Score=88.86 Aligned_cols=143 Identities=13% Similarity=0.029 Sum_probs=104.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHH
Q 038364 768 TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMV 847 (1076)
Q Consensus 768 d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li 847 (1076)
+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+++.++ +.+ ....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~-~~~--------~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKA-QAL--------RLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHH-HHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHH-HHH--------HHHHHHHHH
Confidence 3456777788888888888888888887763 3432100 00111111 000 134666777
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHH
Q 038364 848 DLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDV 925 (1076)
Q Consensus 848 ~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA 925 (1076)
.+|.+.|++++|++.+++. .. +.+...|..+..++...|++++|+..++++++++|++...+..++.+|.+.|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888776 22 345678999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHH
Q 038364 926 -ERLRHSM 932 (1076)
Q Consensus 926 -~~~~~~m 932 (1076)
.+++++|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4466665
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.06 E-value=0.00026 Score=77.35 Aligned_cols=158 Identities=11% Similarity=-0.012 Sum_probs=117.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCC---h-----H-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKT---L-----A-SWNCMIMGFAIYGNGKEAILLFHELLETGFQ-PD----AITFTA 809 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d---~-----~-s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~-Pd----~~t~~~ 809 (1076)
.+..+.+.|++++|.+.+++..+.. . . .+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677888999999999998865421 1 1 2334666777778999999999999874222 23 225788
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcC----CCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDY----NIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-------PFKPD-ATIWG 876 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~----g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-------~~~pd-~~~~~ 876 (1076)
+...|...|++++|.++|+++.+.. +..+. ...|..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888999999999999999887421 11122 347788999999999999999988775 12222 56888
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHhcC
Q 038364 877 ALLGSCRIHGH-LEYAEIASRRLFKL 901 (1076)
Q Consensus 877 ~Ll~a~~~~g~-~e~A~~~~~~l~~l 901 (1076)
.+..++...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 59999999988753
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.06 E-value=0.00041 Score=76.22 Aligned_cols=224 Identities=6% Similarity=-0.012 Sum_probs=149.5
Q ss_pred hHHHHHHHHHhhcCCCCChh-hHHHHHHHHhcCC--CchhHHHHHHHHHHcCCCCChhhHHHHHHHH----hhc---CCH
Q 038364 685 RESLKFFIQMQQEDIKPNST-TMSSLLQTCGGLG--LLQNGKEIHCLCLKNGFIKDAYVATGLIDMY----SKS---GNL 754 (1076)
Q Consensus 685 ~eAl~l~~~m~~~gi~pd~~-t~~~lL~a~~~~g--~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y----~k~---G~~ 754 (1076)
++|++++.+++. +.|+.. .|+.--..+...+ +++++....+.+++.. .-+..+|+.-...+ .+. +++
T Consensus 50 ~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 455555555554 344332 2444334444444 5666666666655531 11223333322222 333 678
Q ss_pred HHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHH
Q 038364 755 KSAREVFRKSAN---KTLASWNCMIMGFAIYGNGK--EAILLFHELLETGFQPDAITFTALLAACKNSGL------VEEG 823 (1076)
Q Consensus 755 ~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~--~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~------~~eA 823 (1076)
+++.++++.+.+ +|..+|+--.-.+.+.|..+ ++++.++++.+.. .-|...|+.--....+.+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 888888887764 56678887777777788887 9999999999853 2344566655555666665 8899
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038364 824 WKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDE-AWDFIRTMP-F----KPDATIWGALLGSCRIHGHLEYAEIASRR 897 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~e-A~~l~~~m~-~----~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~ 897 (1076)
.++++.+... -.-|...|+-+..++.+.|+..+ +.++.++.- . ..++..+..+..++.+.|+.++|.++++.
T Consensus 206 l~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999888764 22346678888888888888444 556777652 1 34677899999999999999999999999
Q ss_pred Hhc-CCCCCchhHHHHHH
Q 038364 898 LFK-LEPCNSANYNLMMN 914 (1076)
Q Consensus 898 l~~-l~P~~~~~y~~L~~ 914 (1076)
+.+ .+|-+..++...++
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 996 89988777766554
No 132
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.06 E-value=0.00018 Score=74.68 Aligned_cols=157 Identities=7% Similarity=0.017 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCC----CchhHHHHHHHHHHcCCCCChhhHH
Q 038364 667 NVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLG----LLQNGKEIHCLCLKNGFIKDAYVAT 742 (1076)
Q Consensus 667 d~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g----~~~~a~~i~~~~~~~g~~~d~~~~~ 742 (1076)
+...+..+...|...+++++|++.|++..+.| +...+..+-..+.. + +.++|...+....+.| ++..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33444444444444444445554444444332 22333333333333 3 4555555555554433 344455
Q ss_pred HHHHHHhh----cCCHHHHHHHHHhcCCCC-----hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 038364 743 GLIDMYSK----SGNLKSAREVFRKSANKT-----LASWNCMIMGFAI----YGNGKEAILLFHELLETGFQPDAITFTA 809 (1076)
Q Consensus 743 ~Li~~y~k----~G~~~~A~~vf~~m~~~d-----~~s~n~li~~~~~----~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ 809 (1076)
.|..+|.. .+++++|.+.|++..+.+ ..++..|...|.. .++.++|+.+|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 55566655 667777777777666543 3566666666666 66777777777777664 122233444
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHhhh
Q 038364 810 LLAACKNS-G-----LVEEGWKYFDSMST 832 (1076)
Q Consensus 810 ll~a~~~~-g-----~~~eA~~~~~~m~~ 832 (1076)
|-..|... | +.++|.++|+...+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 44444432 2 67777777766654
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.8e-05 Score=74.29 Aligned_cols=95 Identities=8% Similarity=-0.089 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
..+..+...+.+.|++++|.+.+++. . .+.+...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34566777888888888888888876 2 234677899999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 038364 919 SNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 919 ~G~~~eA~~~~~~m~~~ 935 (1076)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999988654
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.04 E-value=2e-05 Score=71.39 Aligned_cols=97 Identities=13% Similarity=-0.007 Sum_probs=84.5
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCC--CchhHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPC--NSANYNLMMNL 915 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~--~~~~y~~L~~~ 915 (1076)
...+..+...+.+.|++++|...+++. . .+.+...|..+...+...|++++|+..+++++++.|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 556777888888999999999988876 2 2346778889999999999999999999999999999 99999999999
Q ss_pred HHHc-CChHHHHHHHHHHHhCC
Q 038364 916 LAMS-NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 916 y~~~-G~~~eA~~~~~~m~~~g 936 (1076)
|.+. |++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999999986654
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.04 E-value=1.1e-05 Score=80.79 Aligned_cols=119 Identities=8% Similarity=0.044 Sum_probs=85.0
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHHcCCc--hH
Q 038364 816 NSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGS-CRIHGHL--EY 890 (1076)
Q Consensus 816 ~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a-~~~~g~~--e~ 890 (1076)
..|++++|...++...+.. +.+...|..+...|...|++++|.+.+++. .. +.+...|..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3456666666666655431 123456667777777777777777777665 22 2356677777777 7788888 99
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|+..++++++++|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999999988889999999999999999999998886544
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=1.2e-05 Score=75.42 Aligned_cols=97 Identities=14% Similarity=-0.076 Sum_probs=85.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..|+.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345667788899999999999999887 3334 67789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999986543
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.01 E-value=0.00012 Score=80.03 Aligned_cols=160 Identities=11% Similarity=-0.011 Sum_probs=110.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC---CCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 038364 741 ATGLIDMYSKSGNLKSAREVFRKSAN---KTL------ASWNCMIMGFAIYGNGKEAILLFHELLETGF---QPD--AIT 806 (1076)
Q Consensus 741 ~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~------~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~---~Pd--~~t 806 (1076)
+...+..|...|++++|.+.+++..+ ... ..+..+...+...|++++|+..|++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34466777788888888888765432 111 1233455667777888888888888875321 222 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-----cccHHHHHHHHHhcCCHHHHHHHHHhCC-C------CC-CHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-----IEHYSCMVDLLGKAGYLDEAWDFIRTMP-F------KP-DAT 873 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-----~~~y~~li~~l~r~G~l~eA~~l~~~m~-~------~p-d~~ 873 (1076)
++.+...|...|++++|.++|++..+.....|+ ...|..+...|.+.|++++|.+.+++.- . .. -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777777888889999998888887632111222 2477788888899999999988887751 1 11 156
Q ss_pred HHHHHHHHHHHcCCchHH-HHHHHHHhc
Q 038364 874 IWGALLGSCRIHGHLEYA-EIASRRLFK 900 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A-~~~~~~l~~ 900 (1076)
+|..+...+...|+.++| ...++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788888899999999999 777887764
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.99 E-value=7.2e-05 Score=76.18 Aligned_cols=155 Identities=10% Similarity=0.052 Sum_probs=81.3
Q ss_pred hcCCHHHHHH---HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHH
Q 038364 750 KSGNLKSARE---VFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLE----TGFQPDA-ITFTALLAACKNSGLVE 821 (1076)
Q Consensus 750 k~G~~~~A~~---vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~----~g~~Pd~-~t~~~ll~a~~~~g~~~ 821 (1076)
..|++++|.+ .+..-+......|+.+...+...|++++|+..+++..+ .|..|.. ..+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566667766 44332222345666666677777777777777666554 1111111 23444444455555666
Q ss_pred HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 822 EGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP--DATIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 822 eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~p--d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
+|.+++++..+. +++.+..| ....+..+...+...|++++|+..+++.+
T Consensus 84 ~A~~~~~~al~~-----------------------------~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEEREL-----------------------------LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHH-----------------------------HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------------------------HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 555555544321 11111011 12245555556666666666666666665
Q ss_pred cCCC--CC----chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 900 KLEP--CN----SANYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 900 ~l~P--~~----~~~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
++.+ .+ ...+..++.+|...|++++|.+.+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4321 11 1235677788888888888877777664
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.97 E-value=3.5e-05 Score=73.17 Aligned_cols=98 Identities=9% Similarity=-0.091 Sum_probs=83.5
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 839 TIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 839 ~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
+...+..+...+.+.|++++|.+.+++. . .+.+...|..+...+...|+++.|+..++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566777788888888888888888775 2 2345678889999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhCC
Q 038364 917 AMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 917 ~~~G~~~eA~~~~~~m~~~g 936 (1076)
...|++++|.+.+++..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999886543
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.96 E-value=3.1e-05 Score=83.42 Aligned_cols=182 Identities=8% Similarity=-0.058 Sum_probs=127.6
Q ss_pred hcCCHHHHHHHHHhcCC---CChHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------------
Q 038364 750 KSGNLKSAREVFRKSAN---KTLASWNCM-------IMGFAIYGNGKEAILLFHELLETGFQPDAI-------------- 805 (1076)
Q Consensus 750 k~G~~~~A~~vf~~m~~---~d~~s~n~l-------i~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~-------------- 805 (1076)
..++.+.|.+.|.+..+ .....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777778887777653 233577766 3555555555555555554443 333321
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 038364 806 --------TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKPDA----T 873 (1076)
Q Consensus 806 --------t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~pd~----~ 873 (1076)
....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..++.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455677889999999998877642 354335566677888999999999999876444433 3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCC--CC-CchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLE--PC-NSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~--P~-~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++..+..++...|++++|+..+++...-. |. .+.....++.++.+.|+.+||..+++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67778888999999999999999987543 54 45678889999999999999999999996644
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.94 E-value=2.7e-05 Score=77.06 Aligned_cols=96 Identities=9% Similarity=0.005 Sum_probs=69.9
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345556666677777777777777665 2223 56677777777788888888888888888888888778888888888
Q ss_pred HcCChHHHHHHHHHHHhC
Q 038364 918 MSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~ 935 (1076)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 888888888888777553
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.93 E-value=4.3e-05 Score=70.49 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=87.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTMP--FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.++++++. .+.+..+|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4567788999999999999999999872 33467789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999986543
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.92 E-value=4.3e-05 Score=69.73 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=62.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS 919 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~ 919 (1076)
.+..++..+...|++++|.+.+++. . .+.+...|..+...+...|++++|...++++++++|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4445556666666666666666654 1 2234556666667777777777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHhC
Q 038364 920 NRWEDVERLRHSMDEV 935 (1076)
Q Consensus 920 G~~~eA~~~~~~m~~~ 935 (1076)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 7777777777766543
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.88 E-value=4.7e-05 Score=71.42 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=87.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 557788899999999999999999986 3444 67789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhC
Q 038364 918 MSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~ 935 (1076)
+.|++++|.+.+++..+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHh
Confidence 999999999999998654
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.87 E-value=2.1e-05 Score=76.72 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=74.9
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHH
Q 038364 800 FQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFK-PDATIW 875 (1076)
Q Consensus 800 ~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~-pd~~~~ 875 (1076)
+.|+.. .+..+...+...|++++|...|+..... .| +...|..+..+|.+.|++++|.+.+++. ... .+...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 344432 3444555566677777777777766543 23 3556666777777777777777777765 222 345678
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 876 GALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 876 ~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
..+..++...|++++|+..+++++++.|+++....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 88888899999999999999999999998876543
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.86 E-value=1.8e-05 Score=85.28 Aligned_cols=136 Identities=10% Similarity=-0.122 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC--cccHHHHHHHHH
Q 038364 774 CMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT--IEHYSCMVDLLG 851 (1076)
Q Consensus 774 ~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~--~~~y~~li~~l~ 851 (1076)
.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3455666677777777777666652 455543333344577778888888887654321 0 111 235666778888
Q ss_pred hcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 852 KAGYLDEAWDFIRTMP---FKPD--ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 852 r~G~l~eA~~l~~~m~---~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
+.|++++|++.+++.. ..|. ...+..+..+++..|+.++|...++++++.+|+ ..++..|.+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8888888888888762 2143 336777788889999999999999999999997 655555543
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=7.6e-05 Score=71.51 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=72.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
...+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|++++|+..++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 445666677777777777777777765 45565 4577777777888888888888888888888888778888888
Q ss_pred HHHHcCChHHHHHHHHHHHhC
Q 038364 915 LLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 915 ~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+|...|++++|.+.+++..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHc
Confidence 888888888888888877543
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.85 E-value=0.00012 Score=66.58 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRI 884 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~ 884 (1076)
+..+...+...|++++|.+.|+...... +.+...+..+...+.+.|++++|.+.+++. .. +.+...|..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3444444555566666666655554421 123445556666666666777766666654 22 2356678888888999
Q ss_pred cCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 885 HGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 885 ~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
.|++++|...++++++++|+++..+..++.+.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999998877777766654
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.84 E-value=7.8e-05 Score=76.26 Aligned_cols=169 Identities=12% Similarity=-0.021 Sum_probs=102.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANK---TLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLV 820 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 820 (1076)
.+......|+++.|.+.++...+. ....|..+...+...|++++|+..|++..+. .|+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hH
Confidence 344455556666666666533221 3346777778888888888888888888762 3322100000 00
Q ss_pred HHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 821 EEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 821 ~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
++-. ..+ ....|..+..+|.+.|++++|.+.+++. . .+.+...|..+..++...|++++|+..++++
T Consensus 80 ~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000 000 0245566777778888888888887775 2 2345678888999999999999999999999
Q ss_pred hcCCCCCchhHHHHHHHHHHcCChHHHH-HHHHHHH
Q 038364 899 FKLEPCNSANYNLMMNLLAMSNRWEDVE-RLRHSMD 933 (1076)
Q Consensus 899 ~~l~P~~~~~y~~L~~~y~~~G~~~eA~-~~~~~m~ 933 (1076)
++++|++...+..++.++...|+.+++. ..++.|-
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988887777 4555553
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.82 E-value=4.7e-05 Score=72.01 Aligned_cols=94 Identities=9% Similarity=-0.048 Sum_probs=79.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch-------hHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA-------NYNL 911 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~-------~y~~ 911 (1076)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566788888999999999998886 3334 5678999999999999999999999999999887653 5778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++++|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999998754
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.80 E-value=8.3e-05 Score=74.36 Aligned_cols=126 Identities=8% Similarity=0.021 Sum_probs=83.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHH-HHhcCCH--H
Q 038364 781 IYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDL-LGKAGYL--D 857 (1076)
Q Consensus 781 ~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~-l~r~G~l--~ 857 (1076)
..|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+.. ..+...+..+..+ +.+.|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666531 2234456666666777777777777777665431 1234556666666 6677887 8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhH
Q 038364 858 EAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANY 909 (1076)
Q Consensus 858 eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y 909 (1076)
+|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 888887775 2233 467888888899999999999999999999999886544
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.80 E-value=0.00027 Score=71.75 Aligned_cols=94 Identities=15% Similarity=0.046 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC------C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-C
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN------K---TLASWNCMIMGFAIYGNGKEAILLFHELLET----GFQP-D 803 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------~---d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~----g~~P-d 803 (1076)
..++..+...|...|++++|.+.+++... . ....|+.+...|...|++++|+..+++..+. +-.| .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34455566666666666666666654432 1 1245667777788888888888887776642 1122 1
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 804 -AITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 804 -~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
...+..+...+...|++++|.+++++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1245555566777777777777777654
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.79 E-value=0.0001 Score=68.54 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=86.7
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+...|++++|.+.+++. . .+.+...|..+...+...|++++|+..++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456778889999999999999999986 2 33467789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHhCC
Q 038364 918 MSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 918 ~~G~~~eA~~~~~~m~~~g 936 (1076)
..|++++|.+.+++..+..
T Consensus 92 ~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 9999999999999986543
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=0.00018 Score=68.75 Aligned_cols=76 Identities=17% Similarity=0.000 Sum_probs=51.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
.|..+...|.+.|++++|.+.+++. .. +.+...|..+..++...|++++|...++++++++|++...+..+..+..
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 3444445555555555555555443 11 2345677778888888899999999999999999988777666665543
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.76 E-value=0.0001 Score=72.61 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..+|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3578888899999999999999999999999999999999999999999999999999988654
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=7.4e-05 Score=73.01 Aligned_cols=63 Identities=8% Similarity=-0.088 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcC-------CCCCchhH----HHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKL-------EPCNSANY----NLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l-------~P~~~~~y----~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
..|..+..++...|++++|+..+++++++ +|++...| +.++.+|...|+++||.+.+++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38889999999999999999999999998 99999999 99999999999999999999998653
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.71 E-value=0.00011 Score=70.82 Aligned_cols=106 Identities=13% Similarity=-0.014 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCR 883 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~ 883 (1076)
+..+...+...|++++|.+.|+..... .| +...|..+..+|.+.|++++|.+.+++. .. +.+...|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344444566677777777777766543 23 3456666777777777777777777765 22 234567788888899
Q ss_pred HcCCchHHHHHHHHHhcCCCCCchhHHHHHHH
Q 038364 884 IHGHLEYAEIASRRLFKLEPCNSANYNLMMNL 915 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~ 915 (1076)
..|++++|+..+++++++.|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999887766554433
No 158
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.71 E-value=0.00016 Score=70.84 Aligned_cols=103 Identities=11% Similarity=-0.045 Sum_probs=83.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 038364 800 FQPDAI-TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIW 875 (1076)
Q Consensus 800 ~~Pd~~-t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~ 875 (1076)
+.|+.. .+..+...+...|++++|.+.|+...+. .|+ ...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 456654 5666667788899999999999988753 454 667888899999999999999999886 3334 46788
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 876 GALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 876 ~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
..+..++...|++++|+..+++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999999999999975
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.71 E-value=9.5e-05 Score=69.24 Aligned_cols=92 Identities=13% Similarity=0.024 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC---chhHHHHHHH
Q 038364 844 SCMVDLLGKAGYLDEAWDFIRTM-PFKPD-A---TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN---SANYNLMMNL 915 (1076)
Q Consensus 844 ~~li~~l~r~G~l~eA~~l~~~m-~~~pd-~---~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~---~~~y~~L~~~ 915 (1076)
..+...+.+.|++++|.+.+++. ...|+ . ..|..+..++...|++++|+..++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556667777777777777665 11222 2 366677777888888888888888888888887 6668888888
Q ss_pred HHHcCChHHHHHHHHHHHhC
Q 038364 916 LAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 916 y~~~G~~~eA~~~~~~m~~~ 935 (1076)
|...|++++|.+.+++..+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887553
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.69 E-value=0.00042 Score=67.65 Aligned_cols=124 Identities=13% Similarity=-0.032 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHH
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLETGFQP-DAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLL 850 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l 850 (1076)
|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|.+.+++..+.. ..+...|..+...|
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 333444444444444444444444432 22 23334444444444455555555444444321 11233444445555
Q ss_pred HhcCCHHHHHHHHHhC-CCC-CCHHHHHH--HHHHHHHcCCchHHHHHHHHHh
Q 038364 851 GKAGYLDEAWDFIRTM-PFK-PDATIWGA--LLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m-~~~-pd~~~~~~--Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
.+.|++++|.+.+++. ... .+...|.. +...+...|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 5555555555555443 111 12233322 2222445556666666555543
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.68 E-value=0.00022 Score=70.41 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSC 882 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~ 882 (1076)
.+..+...+...|++++|.+.|++..+. .| +...|..+...|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444445556666666666666665542 23 3456666677777777777777777665 2233 467888999999
Q ss_pred HHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 883 RIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 883 ~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
...|++++|+..++++++++|++...+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999988665544
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.0002 Score=66.95 Aligned_cols=107 Identities=11% Similarity=-0.097 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038364 807 FTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCR 883 (1076)
Q Consensus 807 ~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~ 883 (1076)
+..+...+...|++++|.+.|++..+. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 333344455555555555555555432 22 2445566666666666666666666654 2223 4567888888888
Q ss_pred HcCCchHHHHHHHHHhcCC------CCCchhHHHHHHHH
Q 038364 884 IHGHLEYAEIASRRLFKLE------PCNSANYNLMMNLL 916 (1076)
Q Consensus 884 ~~g~~e~A~~~~~~l~~l~------P~~~~~y~~L~~~y 916 (1076)
..|++++|+..++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888999999999888888 77766666655544
No 163
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.65 E-value=3.4e-05 Score=71.58 Aligned_cols=84 Identities=19% Similarity=0.076 Sum_probs=64.1
Q ss_pred hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 852 KAGYLDEAWDFIRTM-PF---KPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 852 r~G~l~eA~~l~~~m-~~---~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
..|++++|++.+++. .. .|+ ...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356677777777765 33 243 4478888888888999999999999999999999889999999999999999999
Q ss_pred HHHHHHHhC
Q 038364 927 RLRHSMDEV 935 (1076)
Q Consensus 927 ~~~~~m~~~ 935 (1076)
+.+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988887553
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.63 E-value=0.00011 Score=68.35 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC-------chhHHH
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN-------SANYNL 911 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~-------~~~y~~ 911 (1076)
..+..+...+...|++++|...+++. . .+.+...|..+...+...|++++|...+++++++.|++ +..|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566777777888888888887775 2 23466788888888999999999999999999988776 778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998654
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.63 E-value=0.00028 Score=82.70 Aligned_cols=142 Identities=10% Similarity=0.017 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 769 LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 769 ~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
...|..+...|.+.|++++|+..|++..+ +.|+...+ .-++..+ .+.. ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL-----------SEKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC-----------CHHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC-----------ChHHHHH-HHHH--------HHHHHHHHHH
Confidence 34677788888888888888888888876 23332100 0011111 1111 1346677788
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
+|.+.|++++|++.+++. .. +.+...|..+..++...|++++|+..++++++++|++...+..++.++.+.|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876 22 3456789999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHH
Q 038364 927 R-LRHSM 932 (1076)
Q Consensus 927 ~-~~~~m 932 (1076)
+ ++++|
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 4 44555
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.59 E-value=0.00025 Score=77.15 Aligned_cols=99 Identities=11% Similarity=-0.090 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038364 805 ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGS 881 (1076)
Q Consensus 805 ~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a 881 (1076)
..+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34444555556666666666666655542 23 3445555555555666666666555553 2333 33455555555
Q ss_pred HHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+...|++++|+..++++++++|+++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccch
Confidence 5555666666666666555555443
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.57 E-value=0.0003 Score=66.55 Aligned_cols=99 Identities=11% Similarity=-0.122 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 038364 804 AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGS 881 (1076)
Q Consensus 804 ~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a 881 (1076)
...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++. .. +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 3444455555555666666666655554421 112445566666666666666666666654 22 2346678888888
Q ss_pred HHHcCCchHHHHHHHHHhcCCCC
Q 038364 882 CRIHGHLEYAEIASRRLFKLEPC 904 (1076)
Q Consensus 882 ~~~~g~~e~A~~~~~~l~~l~P~ 904 (1076)
+...|++++|+..++++++++|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888776
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.56 E-value=0.00026 Score=79.36 Aligned_cols=65 Identities=9% Similarity=-0.095 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
..+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 46889999999999999999999999999999999999999999999999999999999986643
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.56 E-value=0.00055 Score=69.80 Aligned_cols=94 Identities=10% Similarity=-0.081 Sum_probs=76.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-D----------------ATIWGALLGSCRIHGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d----------------~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P 903 (1076)
.+..+...+.+.|++++|.+.+++. ...| + ..+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 4455566666677777777666654 1111 1 26888889999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 904 CNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+++..|..++.+|...|++++|.+.+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998653
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.55 E-value=0.0001 Score=86.90 Aligned_cols=114 Identities=10% Similarity=-0.027 Sum_probs=78.7
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchH
Q 038364 814 CKNSGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 814 ~~~~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~ 890 (1076)
+...|++++|.+.|++..+. .|+ ...|..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34456666666666665542 233 456666666677777777777766665 2333 45678888888888899999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHH--HHHcCChHHHHHHHH
Q 038364 891 AEIASRRLFKLEPCNSANYNLMMNL--LAMSNRWEDVERLRH 930 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~~~~y~~L~~~--y~~~G~~~eA~~~~~ 930 (1076)
|+..++++++++|++...+..++.+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999888888888887 888888998888877
No 171
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.54 E-value=0.0003 Score=82.70 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCC
Q 038364 841 EHYSCMVDLLGKAGYLDEAWDFIRTM---------PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCN 905 (1076)
Q Consensus 841 ~~y~~li~~l~r~G~l~eA~~l~~~m---------~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~ 905 (1076)
.+++.|..+|...|++++|+.++++. +..|+.. +++.|...|...|++++|+.+++++++ +.|++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 35566666666666666666666553 2345543 688888889999999999999988876 46776
Q ss_pred chh---HHHHHHHHHHcCChHHHHHHHHHHHhCCCccCc
Q 038364 906 SAN---YNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVL 941 (1076)
Q Consensus 906 ~~~---y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~ 941 (1076)
+.+ +..|...+...|++++|+.++.++++.-.+..|
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 544 678888999999999999999999886544444
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.53 E-value=0.00031 Score=67.78 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHH
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGF-QPDA----ITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSC 845 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd~----~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~ 845 (1076)
+|..+...|...|++++|+..+++..+..- .++. .++..+...+...|++++|.+++++..+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------ 78 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL------------ 78 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 556666777777777777777776654210 0111 13333344444455555555544443321
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCC------CCchhHHHHHHHHHH
Q 038364 846 MVDLLGKAGYLDEAWDFIRTMPFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEP------CNSANYNLMMNLLAM 918 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P------~~~~~y~~L~~~y~~ 918 (1076)
....+..+ ...++..+...+...|++++|...+++++++.+ .....+..++.+|..
T Consensus 79 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 79 -----------------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 00011001 133566666777777888888888777765422 123568889999999
Q ss_pred cCChHHHHHHHHHHHh
Q 038364 919 SNRWEDVERLRHSMDE 934 (1076)
Q Consensus 919 ~G~~~eA~~~~~~m~~ 934 (1076)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999888654
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.51 E-value=0.00053 Score=80.76 Aligned_cols=116 Identities=9% Similarity=0.017 Sum_probs=63.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 038364 744 LIDMYSKSGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGL 819 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~ 819 (1076)
+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.|++..+. .|+ ...+..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 44556666777777777765432 34556666666677777777777777666663 443 3455555556666666
Q ss_pred HHHHHHHHHHhhhcCCCCCC-cccHHHHHHH--HHhcCCHHHHHHHHH
Q 038364 820 VEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL--LGKAGYLDEAWDFIR 864 (1076)
Q Consensus 820 ~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~--l~r~G~l~eA~~l~~ 864 (1076)
+++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666666543 222 2233333333 445555555555554
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.50 E-value=0.0042 Score=69.07 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=103.8
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHhcCC---CChHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 038364 742 TGLIDMYSKSG-NLKSAREVFRKSAN---KTLASWNCMIMGFAIY-G-NGKEAILLFHELLETGFQP-DAITFTALLAAC 814 (1076)
Q Consensus 742 ~~Li~~y~k~G-~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~-g-~~~~Al~l~~~M~~~g~~P-d~~t~~~ll~a~ 814 (1076)
+.--..+...| .++++.+.++.+.. ++...|+--...+.+. + +.++++++++++.+. .| |...|..-....
T Consensus 92 n~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl 169 (349)
T 3q7a_A 92 QYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLY 169 (349)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 33333333444 35555555555442 3334555444444443 4 556666666666552 23 333444333333
Q ss_pred HhcCCHH--------HHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCC-------HHHHHHHHHhC-C-CCCCHHHHHH
Q 038364 815 KNSGLVE--------EGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGY-------LDEAWDFIRTM-P-FKPDATIWGA 877 (1076)
Q Consensus 815 ~~~g~~~--------eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~-------l~eA~~l~~~m-~-~~pd~~~~~~ 877 (1076)
.+.|..+ ++.++++++.+.. .-+...|+-...++.+.|+ ++++++.++++ . .+-|...|+-
T Consensus 170 ~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Y 247 (349)
T 3q7a_A 170 SHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNY 247 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3333333 6666666666531 1234455555555555554 67777777665 2 3446778887
Q ss_pred HHHHHHHcCCc--------------------hHHHHHHHHHhcCC------CCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 038364 878 LLGSCRIHGHL--------------------EYAEIASRRLFKLE------PCNSANYNLMMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 878 Ll~a~~~~g~~--------------------e~A~~~~~~l~~l~------P~~~~~y~~L~~~y~~~G~~~eA~~~~~~ 931 (1076)
+-..+.+.|+. ......+..+.... +..+-+...|+++|...|+.++|.++++.
T Consensus 248 lr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~ 327 (349)
T 3q7a_A 248 LRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEK 327 (349)
T ss_dssp HHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777776654 22222222232222 34556678999999999999999999999
Q ss_pred HHh
Q 038364 932 MDE 934 (1076)
Q Consensus 932 m~~ 934 (1076)
+.+
T Consensus 328 l~~ 330 (349)
T 3q7a_A 328 LSS 330 (349)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.49 E-value=0.00057 Score=63.35 Aligned_cols=76 Identities=7% Similarity=-0.043 Sum_probs=45.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHH
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTMP-----FKPD----ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLM 912 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m~-----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L 912 (1076)
.+..+...|.+.|++++|...+++.. ..++ ..+|..+..++...|++++|...+++++++.| ++.....+
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l 118 (131)
T 1elr_A 40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34444444444455555544444431 1122 45677777788888888888888888888877 45555555
Q ss_pred HHHHHH
Q 038364 913 MNLLAM 918 (1076)
Q Consensus 913 ~~~y~~ 918 (1076)
..++..
T Consensus 119 ~~~~~~ 124 (131)
T 1elr_A 119 QQAEKI 124 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.48 E-value=0.0044 Score=68.54 Aligned_cols=191 Identities=11% Similarity=0.040 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC--CHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC-HHHHHHHHH
Q 038364 720 QNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSG--NLKSAREVFRKSAN---KTLASWNCMIMGFAIYGN-GKEAILLFH 793 (1076)
Q Consensus 720 ~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G--~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~-~~~Al~l~~ 793 (1076)
+++..+.+.+++. .+-+..+|+.-...+.+.| .++++.++++.+.+ +|..+|+--.-.+...|. .+++++.++
T Consensus 91 ~~EL~~~~~~L~~-~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4445555555542 2224455555555555555 36777777766653 455566655555566666 467777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhc-----
Q 038364 794 ELLETGFQPDAITFTALLAACKNS--------------GLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKA----- 853 (1076)
Q Consensus 794 ~M~~~g~~Pd~~t~~~ll~a~~~~--------------g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~----- 853 (1076)
++.+.. .-|...|+.....+.+. +.++++.++++..... .|+ ...|+-+-.++.+.
T Consensus 170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccc
Confidence 777632 22333444443333332 3456666666665542 233 33444333344433
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 038364 854 ------GYLDEAWDFIRTM-PFKPDATIWGALLGSC-----RIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLL 916 (1076)
Q Consensus 854 ------G~l~eA~~l~~~m-~~~pd~~~~~~Ll~a~-----~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y 916 (1076)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++.++||...+.|.-|..-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3466666666665 345554 343222221 1245566666777777777776655555554433
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00044 Score=79.82 Aligned_cols=162 Identities=7% Similarity=-0.098 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHH---HHHHHH-HHHhcCCHHHHHHHHHHhhhc---CCCCCC-ccc
Q 038364 772 WNCMIMGFAIYGNGKEAILLFHELLET-GFQPDAIT---FTALLA-ACKNSGLVEEGWKYFDSMSTD---YNIIPT-IEH 842 (1076)
Q Consensus 772 ~n~li~~~~~~g~~~~Al~l~~~M~~~-g~~Pd~~t---~~~ll~-a~~~~g~~~eA~~~~~~m~~~---~g~~p~-~~~ 842 (1076)
+..+...|...|++++|.+.+.++... +..++..+ ....+. .+...|..+++.++++..... .+..+. ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556677777777777777777766541 11122211 112222 233467778877777665432 122222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcCC---CCC----ch
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTMP-------FKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKLE---PCN----SA 907 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m~-------~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~---P~~----~~ 907 (1076)
+..++..|...|++++|.+++++.. .++. ..++..++..|...|++++|...+++++.+. +++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6677888888888888888877641 1222 3367777788888899999998888877643 222 24
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 038364 908 NYNLMMNLLAMSNRWEDVERLRHSMD 933 (1076)
Q Consensus 908 ~y~~L~~~y~~~G~~~eA~~~~~~m~ 933 (1076)
.|..++.++...|++++|.+.+.+.-
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777888888899998888776653
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.47 E-value=0.02 Score=63.63 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=101.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-CcHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 038364 364 WNEIIMVKLRNEKWENAIKLFREMQFSSAKAISR-TIVKMLQACAKVG-AFHEGKQIHGYVLKSALESNLSVCNCLISMY 441 (1076)
Q Consensus 364 ~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~-t~~~ll~a~~~~g-~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y 441 (1076)
|+.+-....+.+..++|+++++++... .|+.. .|+.--..+...+ +++++....+.+++...+ +..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 333333444555667788888877764 34333 3555444445556 477777777777766533 455666555555
Q ss_pred HhC-C-ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChH--------HHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 038364 442 SRN-N-KLELATRVFDSMKD---HNLSSWNSMISSYTGLGYVD--------VAWSLFNKMNSSRIQPDIITWNCLLSGHF 508 (1076)
Q Consensus 442 ~k~-g-~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~g~~~--------~A~~lf~~M~~~g~~pd~~ty~~Li~~~~ 508 (1076)
.+. + +.+++..+++++.+ +|-..|+--...+.+.|..+ ++++.++++.+..+. |..+|+-....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 554 5 67788888887754 35557776555555555555 788888888887766 7788887777777
Q ss_pred hcCC-------hhhHHHHHHHHHhcC
Q 038364 509 THGS-------YQNVLTLLRGMQSLG 527 (1076)
Q Consensus 509 ~~g~-------~~~Al~l~~~m~~~g 527 (1076)
+.++ ++++++.++++....
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC
Confidence 7665 466677766666544
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.44 E-value=0.0011 Score=61.88 Aligned_cols=100 Identities=15% Similarity=-0.009 Sum_probs=67.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCCc----ccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 038364 812 AACKNSGLVEEGWKYFDSMSTDYNIIPTI----EHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPD----ATIWGALLGSC 882 (1076)
Q Consensus 812 ~a~~~~g~~~eA~~~~~~m~~~~g~~p~~----~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd----~~~~~~Ll~a~ 882 (1076)
..+...|++++|.+.|+.+.+.. |+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34556666777777666665532 222 35556677777777777777777665 22233 45677778888
Q ss_pred HHcCCchHHHHHHHHHhcCCCCCchhHHHHHH
Q 038364 883 RIHGHLEYAEIASRRLFKLEPCNSANYNLMMN 914 (1076)
Q Consensus 883 ~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~ 914 (1076)
...|++++|...++++++..|+++........
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 88999999999999999999987654444333
No 180
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.41 E-value=0.00053 Score=61.68 Aligned_cols=96 Identities=17% Similarity=0.050 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHH
Q 038364 809 ALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP---DATIWGALLGSCRI 884 (1076)
Q Consensus 809 ~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p---d~~~~~~Ll~a~~~ 884 (1076)
.+...+...|++++|...|++..+.. ..+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 33344455555555555555554321 122345555666666666666666666664 2233 46678888888888
Q ss_pred c-CCchHHHHHHHHHhcCCCCCc
Q 038364 885 H-GHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 885 ~-g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
. |++++|+..++++++..|.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCCC
Confidence 8 888888888888888888754
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.36 E-value=0.00062 Score=77.32 Aligned_cols=136 Identities=13% Similarity=0.039 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHH
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVD 848 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~ 848 (1076)
..|..+...+.+.|++++|+..|++.++. .|+. ......+++.+ ..| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~----------~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK----------LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG----------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH----------HHHHHHHHHHHHHH
Confidence 45777888888899999999888887761 1110 00011111111 112 2457788888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVE 926 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~ 926 (1076)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++.+.++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 4445 56789999999999999999999999999999999999999999999998888776
Q ss_pred H
Q 038364 927 R 927 (1076)
Q Consensus 927 ~ 927 (1076)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 5
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00025 Score=64.17 Aligned_cols=92 Identities=10% Similarity=-0.095 Sum_probs=75.1
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC------chhHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN------SANYNL 911 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~------~~~y~~ 911 (1076)
...+..+...+.+.|++++|.+.+++. .. +.+...|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 455667778888888888888888876 22 3467789999999999999999999999999999998 777888
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 038364 912 MMNLLAMSNRWEDVERLRHS 931 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~ 931 (1076)
++.++...|+.++|.+.+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888888777665544
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.33 E-value=0.00059 Score=61.20 Aligned_cols=66 Identities=20% Similarity=0.070 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 870 PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
-+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456789999999999999999999999999999999999999999999999999999999987543
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.32 E-value=0.016 Score=63.92 Aligned_cols=179 Identities=13% Similarity=0.101 Sum_probs=129.0
Q ss_pred HHHHHHHHHhcC---CCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 038364 754 LKSAREVFRKSA---NKTLASWNCMIMGFAIYG--NGKEAILLFHELLETGFQPDAITFTALLAACKNSGL-VEEGWKYF 827 (1076)
Q Consensus 754 ~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g--~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~-~~eA~~~~ 827 (1076)
++++..+++.+. .++..+|+--...+...| .+++++..++++.+.. .-|...|+.--..+.+.|. ++++.+++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777665 357788987777777777 4899999999999843 3355677776667777887 69999999
Q ss_pred HHhhhcCCCCCCcccHHHHHHHHHhc--------------CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc------
Q 038364 828 DSMSTDYNIIPTIEHYSCMVDLLGKA--------------GYLDEAWDFIRTM--PFKPDATIWGALLGSCRIH------ 885 (1076)
Q Consensus 828 ~~m~~~~g~~p~~~~y~~li~~l~r~--------------G~l~eA~~l~~~m--~~~pd~~~~~~Ll~a~~~~------ 885 (1076)
+.+.+.. .-|...|+-...++.+. +.++++++++++. ..+-|...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998752 23455666666565554 5688999999886 2345778898776665554
Q ss_pred -----CCchHHHHHHHHHhcCCCCCchhHHHHHHHH---HHcCChHHHHHHHHHHHhC
Q 038364 886 -----GHLEYAEIASRRLFKLEPCNSANYNLMMNLL---AMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 886 -----g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y---~~~G~~~eA~~~~~~m~~~ 935 (1076)
+.+++++..++++++++|++.-.+..++.+. ...|..+++...+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578999999999999999854444333322 2357778888888888653
No 185
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.31 E-value=0.0007 Score=63.19 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=61.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 038364 810 LLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHG 886 (1076)
Q Consensus 810 ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g 886 (1076)
+...+...|++++|...|+...+. .| +...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455666677776666666543 33 3556666677777777777777777665 2334 4567888888888888
Q ss_pred CchHHHHHHHHHhcCCCCCc
Q 038364 887 HLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 887 ~~e~A~~~~~~l~~l~P~~~ 906 (1076)
++++|+..++++++++|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 99999999999998888753
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.28 E-value=0.00064 Score=65.50 Aligned_cols=135 Identities=11% Similarity=0.011 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCC-----CCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSAN-----KTL----ASWNCMIMGFAIYGNGKEAILLFHELLETGF-QPD---- 803 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~----~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~-~Pd---- 803 (1076)
..++..+...|...|++++|.+.+++..+ .+. .++..+...+...|++++|+..+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 35678899999999999999999987653 222 4778899999999999999999999775210 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 038364 804 AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP-DATIWGALLGSC 882 (1076)
Q Consensus 804 ~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~ 882 (1076)
...+..+...+...|++++|.+++++..+. .++.+..+ ...++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 224455555566777777777776655431 11111001 122455556666
Q ss_pred HHcCCchHHHHHHHHHhcC
Q 038364 883 RIHGHLEYAEIASRRLFKL 901 (1076)
Q Consensus 883 ~~~g~~e~A~~~~~~l~~l 901 (1076)
...|++++|...+++.+++
T Consensus 140 ~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 6777777777777766654
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.24 E-value=0.00036 Score=78.21 Aligned_cols=147 Identities=12% Similarity=-0.015 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHH
Q 038364 769 LASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVD 848 (1076)
Q Consensus 769 ~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~ 848 (1076)
...|..+...+.+.|++++|+..|++..+ +.|+...+ ...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-------~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMF-------QLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHH-------TCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchhh-------hhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 35677888888999999999999999887 45665422 23344444443221 236778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH-HcCChHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA-MSNRWEDV 925 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~-~~G~~~eA 925 (1076)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998886 3334 56789999999999999999999999999999999999888888844 45667788
Q ss_pred HHHHHHHHhC
Q 038364 926 ERLRHSMDEV 935 (1076)
Q Consensus 926 ~~~~~~m~~~ 935 (1076)
.+++++|.+.
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887543
No 188
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.23 E-value=0.0015 Score=61.54 Aligned_cols=60 Identities=8% Similarity=0.032 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 038364 771 SWNCMIMGFAIYGNGKEAILLFHELLETGFQPDA-ITFTALLAACKNSGLVEEGWKYFDSMST 832 (1076)
Q Consensus 771 s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~eA~~~~~~m~~ 832 (1076)
.|..+...+.+.|++++|++.|++.++ +.|+. ..|..+..+|...|++++|.+.++...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455566666667777777777766666 34443 3455555566666666666666665543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.22 E-value=0.0013 Score=74.66 Aligned_cols=111 Identities=8% Similarity=-0.047 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHH
Q 038364 806 TFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPFKP-DATIWGALLGSCRI 884 (1076)
Q Consensus 806 t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~~p-d~~~~~~Ll~a~~~ 884 (1076)
.+..+...+...|++++|.+.|++..+.. |. ....-..+++.+ ..| +..+|..+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~~------~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGAK------LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHGG------GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 46666667777888888888777765420 00 000011111111 122 34688889999999
Q ss_pred cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 885 HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 885 ~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
.|++++|+..++++++++|+++.+|..++.+|.+.|++++|.+.+++..+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998654
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.22 E-value=0.00091 Score=57.91 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLA 917 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~ 917 (1076)
...+..+...+.+.|++++|.+.+++. .. +.+..+|..+...+...|++++|+..++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566677777778888887777765 22 3356678888888889999999999999999999998888888888887
Q ss_pred HcC
Q 038364 918 MSN 920 (1076)
Q Consensus 918 ~~G 920 (1076)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.22 E-value=0.0017 Score=76.03 Aligned_cols=65 Identities=12% Similarity=-0.000 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 46888899999999999999999999999999999999999999999999999999999986543
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.22 E-value=0.0039 Score=74.86 Aligned_cols=169 Identities=11% Similarity=0.017 Sum_probs=131.3
Q ss_pred cCCHHHHHHHHHhcCC---CChHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 038364 751 SGNLKSAREVFRKSAN---KTLASWNCMIMGFAIYGN----------GKEAILLFHELLETGFQPDA-ITFTALLAACKN 816 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~----------~~~Al~l~~~M~~~g~~Pd~-~t~~~ll~a~~~ 816 (1076)
...-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+ ..|.. ..|..-...+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3344667777777653 345677766666666666 8899999999988 44544 577777777888
Q ss_pred cC--CHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcC-CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc-----
Q 038364 817 SG--LVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAG-YLDEAWDFIRTM-PF-KPDATIWGALLGSCRIH----- 885 (1076)
Q Consensus 817 ~g--~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G-~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~----- 885 (1076)
.| +++++.+.++++.+. .| +...|+--..++.+.| ..+++.++++++ .. .-|...|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88 779999999999864 34 3556777777888888 899999999988 33 34677899888887663
Q ss_pred ---------CCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHH
Q 038364 886 ---------GHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWED 924 (1076)
Q Consensus 886 ---------g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~e 924 (1076)
+.++++.+.++++++++|++..+|..+..++.+.|+.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998555
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.21 E-value=0.00021 Score=66.19 Aligned_cols=93 Identities=11% Similarity=-0.020 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHH
Q 038364 817 SGLVEEGWKYFDSMSTDYNIIPT-IEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEI 893 (1076)
Q Consensus 817 ~g~~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~ 893 (1076)
.|++++|...|++..+...-.|+ ...+..+...|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35556666666665532000122 445666667777777777777777665 2223 45677788888888888999999
Q ss_pred HHHHHhcCCCCCchhH
Q 038364 894 ASRRLFKLEPCNSANY 909 (1076)
Q Consensus 894 ~~~~l~~l~P~~~~~y 909 (1076)
.++++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 9998888888876543
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.18 E-value=0.00067 Score=62.23 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=65.0
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 858 EAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 858 eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3333 56788889999999999999999999999999999999999999999999999999999988553
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.17 E-value=0.00042 Score=67.65 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=48.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HH----HHHHHHHHHcCCchHHHHHHHHHhcCCCCCchh
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM--------PFKPDAT-IW----GALLGSCRIHGHLEYAEIASRRLFKLEPCNSAN 908 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m--------~~~pd~~-~~----~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~ 908 (1076)
.|..+..++.+.|++++|+..+++. .+.||.. .| .....++...|++++|+..|+++++++|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3444444455555555554444432 3477654 78 899999999999999999999999999998655
Q ss_pred HH
Q 038364 909 YN 910 (1076)
Q Consensus 909 y~ 910 (1076)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.15 E-value=0.0006 Score=76.42 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 038364 738 AYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNS 817 (1076)
Q Consensus 738 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~ 817 (1076)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34577888999999999999999988653222111 1223333444433221 12566677778888
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHHcCCchHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PFKPDA-TIWGALLGS-CRIHGHLEYAEI 893 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~~pd~-~~~~~Ll~a-~~~~g~~e~A~~ 893 (1076)
|++++|...++...+. .| +...|..+..+|...|++++|.+.|++. ...|+. ..+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888753 34 4667888889999999999999999887 455544 355555544 345577888899
Q ss_pred HHHHHhcCCCCCc
Q 038364 894 ASRRLFKLEPCNS 906 (1076)
Q Consensus 894 ~~~~l~~l~P~~~ 906 (1076)
.++++++..|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999998764
No 197
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.15 E-value=0.00077 Score=66.19 Aligned_cols=127 Identities=16% Similarity=0.017 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-CcccHHHHHH
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIP-TIEHYSCMVD 848 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p-~~~~y~~li~ 848 (1076)
..|......+.+.|++++|+..|++..+. +............. +..+ .| +...|..+..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~~~~~~--~~~~------~~~~~~~~~nla~ 71 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREKPGEPE--WVEL------DRKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSCTTSHH--HHHH------HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCCCCHHH--HHHH------HHHHHHHHHHHHH
Confidence 45667777777788888888887777652 00000000000000 0000 11 2346777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc-hhHHHHHHHH
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS-ANYNLMMNLL 916 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~-~~y~~L~~~y 916 (1076)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++++++|+++ .....|..+.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 888888888888888776 2334 567899999999999999999999999999999987 4444554444
No 198
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0023 Score=73.67 Aligned_cols=157 Identities=8% Similarity=-0.073 Sum_probs=113.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc-
Q 038364 778 GFAIYGNGKEAILLFHELLETGFQPD----------------AITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI- 840 (1076)
Q Consensus 778 ~~~~~g~~~~Al~l~~~M~~~g~~Pd----------------~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~- 840 (1076)
.+.+.|++++|++.|.+..+..-... ...+..+...|...|++++|.+++..+....+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 35566777888887777776321111 1236677888999999999999999887643333332
Q ss_pred ---ccHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhcC------CC
Q 038364 841 ---EHYSCMVDLLGKAGYLDEAWDFIRTM-------PFKPD-ATIWGALLGSCRIHGHLEYAEIASRRLFKL------EP 903 (1076)
Q Consensus 841 ---~~y~~li~~l~r~G~l~eA~~l~~~m-------~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l------~P 903 (1076)
...+.+...+...|+.++|.+++++. ...+. ..++..|...+...|++++|...++++... .|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 23334445555778999999888765 22333 457888899999999999999999988753 22
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 904 CNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 904 ~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.....|..++.+|...|++++|...+++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 2346799999999999999999999988754
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.09 E-value=0.0012 Score=77.53 Aligned_cols=114 Identities=12% Similarity=0.008 Sum_probs=83.5
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc---hhHHH
Q 038364 850 LGKAGYLDEAWDFIRTM---------PFKPDA-TIWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS---ANYNL 911 (1076)
Q Consensus 850 l~r~G~l~eA~~l~~~m---------~~~pd~-~~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~---~~y~~ 911 (1076)
+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++ ..|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777776666553 134443 3789999999999999999999999886 356665 45889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCccCcceEEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHH
Q 038364 912 MMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKK 981 (1076)
Q Consensus 912 L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 981 (1076)
|+.+|..+|++++|+.++++..+.-. + .-+..||...++...+.....++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILL-V-----------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH-H-----------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754210 0 0123699888887777766655543
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.04 E-value=0.00045 Score=67.30 Aligned_cols=86 Identities=7% Similarity=-0.041 Sum_probs=66.9
Q ss_pred HhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCC----------chHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 038364 851 GKAGYLDEAWDFIRTM-PFK-PDATIWGALLGSCRIHGH----------LEYAEIASRRLFKLEPCNSANYNLMMNLLAM 918 (1076)
Q Consensus 851 ~r~G~l~eA~~l~~~m-~~~-pd~~~~~~Ll~a~~~~g~----------~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~ 918 (1076)
.|.+++++|.+.+++. ... .+...|..+..++...++ +++|+..++++++++|++..+|+.++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3555667777666665 222 355567667666666655 4699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhCC
Q 038364 919 SN-----------RWEDVERLRHSMDEVG 936 (1076)
Q Consensus 919 ~G-----------~~~eA~~~~~~m~~~g 936 (1076)
.| ++++|.+.+++..+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999997654
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.03 E-value=0.0013 Score=75.94 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcceEE
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS---ANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLVWSW 945 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~---~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~~sw 945 (1076)
+++.|..+|...|++++|+.+++++++ +.|+++ ..|+.|+.+|..+|++++|+.++++..+.- .+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~------ 403 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM-RV------ 403 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HH------
Confidence 667777777778888888888777765 345554 458899999999999999999999875421 00
Q ss_pred EEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHH
Q 038364 946 IQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKK 981 (1076)
Q Consensus 946 i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~ 981 (1076)
.-+..||...+++..+.+...+|+.
T Consensus 404 -----------~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 404 -----------THGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp -----------HTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred -----------hcCCCChHHHHHHHHHHHHHHHHhc
Confidence 0123699999999999988888763
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.90 E-value=0.0036 Score=55.38 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---chHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 038364 869 KPDATIWGALLGSCRIHGH---LEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGV 937 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g~---~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~ 937 (1076)
++|+..|..+..++...++ .++|...++++++++|+++.+...+++.+.+.|++++|.+.++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4577788888888766655 79999999999999999999999999999999999999999999987653
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0025 Score=57.38 Aligned_cols=67 Identities=12% Similarity=-0.011 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 870 PDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++...|..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788899999999999999999999999999999999999999999999999999999986543
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.68 E-value=0.011 Score=70.90 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=122.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCC----------HHHHHHHHHHhhhcCCCCCC-cccHHHHHHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDAIT-FTALLAACKNSGL----------VEEGWKYFDSMSTDYNIIPT-IEHYSCMVDL 849 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~~t-~~~ll~a~~~~g~----------~~eA~~~~~~m~~~~g~~p~-~~~y~~li~~ 849 (1076)
....++|++.++++.+ +.|+..| |+.--.++.+.|. ++++.+.++.+.+. .|. ...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3445789999999998 6787754 5555555555666 89999999999864 344 5577777888
Q ss_pred HHhcC--CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcC-CchHHHHHHHHHhcCCCCCchhHHHHHHHHHHc-----
Q 038364 850 LGKAG--YLDEAWDFIRTM-P-FKPDATIWGALLGSCRIHG-HLEYAEIASRRLFKLEPCNSANYNLMMNLLAMS----- 919 (1076)
Q Consensus 850 l~r~G--~l~eA~~l~~~m-~-~~pd~~~~~~Ll~a~~~~g-~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~----- 919 (1076)
+.+.| ++++|+++++++ . .+.+...|+.-..+....| ..+++...++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88999 779999999998 2 3457789999999999999 899999999999999999999999999998884
Q ss_pred ---------CChHHHHHHHHHHHhCC
Q 038364 920 ---------NRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 920 ---------G~~~eA~~~~~~m~~~g 936 (1076)
+++++|.+.+++..+..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC
Confidence 56789999988876644
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.50 E-value=0.0055 Score=52.74 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 872 ATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 872 ~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
...|..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999998654
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.46 E-value=0.0053 Score=70.83 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS---ANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~---~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
+++.|..+|...|++++|+.+++++++ +.|+++ ..|+.|+.+|..+|+++||+.++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 677777777778888888877777765 355554 4589999999999999999999998754
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.41 E-value=0.016 Score=55.30 Aligned_cols=64 Identities=8% Similarity=-0.103 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHH----cCChHHHHHHHHHHHhCC
Q 038364 871 DATIWGALLGSCRI----HGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAM----SNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~----~G~~~eA~~~~~~m~~~g 936 (1076)
+...+..|...|.. .+|.++|...++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 34444445555544 55666666666666654 345667777777777 677777777777776665
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.29 E-value=0.01 Score=56.68 Aligned_cols=113 Identities=12% Similarity=-0.053 Sum_probs=89.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHh----cCCHH
Q 038364 782 YGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGK----AGYLD 857 (1076)
Q Consensus 782 ~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r----~G~l~ 857 (1076)
.++.++|+++|++..+.| .|+.. +-..|...+.+++|.++|++..+. -++..+..|..+|.+ .++.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346788999999998887 55554 455567777888899999988764 356777888888888 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHhcCCC
Q 038364 858 EAWDFIRTMPFKPDATIWGALLGSCRI----HGHLEYAEIASRRLFKLEP 903 (1076)
Q Consensus 858 eA~~l~~~m~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~~~l~~l~P 903 (1076)
+|.+++++.-..-+...+..|...|.. .+|.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999887434677788888888888 8999999999999988753
No 209
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.20 E-value=0.0012 Score=74.43 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=107.8
Q ss_pred CCchhhhHHHHHHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 038364 225 NSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSRILTIILKLC 304 (1076)
Q Consensus 225 ~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~t~~~ll~a~ 304 (1076)
..+-++..|-.++.+.|+..+|...| +...|+..|..+|.+..+.|.+ ++-+..+...++. .+ ++..=+.++-++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~-edLv~yL~MaRk~-~k-e~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNW-EELVKYLQMARKK-AR-ESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCC-TTHHHHHHTTSTT-CC-STTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCH-HHHHHHHHHHHHH-hc-ccccHHHHHHHH
Confidence 44567777777777777777776665 3345555667778877788877 6665555443333 22 223335666777
Q ss_pred hccCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCC-----------------------CCCh
Q 038364 305 TKLMAFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSD-----------------------LEDD 361 (1076)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~-----------------------~~d~ 361 (1076)
++.+++.+-..... .||+.--..+-+-+...|.++.|+-+|..++. ..++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77766544322211 24444444555566667777777777776654 0134
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCcHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Q 038364 362 LLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAFHEGKQIHGYVLKSAL-ESNLSVCNCLISM 440 (1076)
Q Consensus 362 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~-~~d~~v~n~Li~~ 440 (1076)
-+|-.+-.+|+..+.+.-|.-.--.+.- .|| -+..++.-|-..|.+++-.++++.-+ |+ .....+++-|.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaIL 272 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAIL 272 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHH
Confidence 4555555555555555544433333321 111 11233444445555555444444332 22 2344556666666
Q ss_pred HHhC
Q 038364 441 YSRN 444 (1076)
Q Consensus 441 y~k~ 444 (1076)
|+|-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 6654
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.16 E-value=0.0079 Score=54.86 Aligned_cols=79 Identities=13% Similarity=0.025 Sum_probs=54.1
Q ss_pred HHHHHHHhhhcCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038364 823 GWKYFDSMSTDYNIIP-TIEHYSCMVDLLGKAGYLDEAWDFIRTM-PF-KPDATIWGALLGSCRIHGHLEYAEIASRRLF 899 (1076)
Q Consensus 823 A~~~~~~m~~~~g~~p-~~~~y~~li~~l~r~G~l~eA~~l~~~m-~~-~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~ 899 (1076)
+.+.|+...+ ..| +...+..+...|.+.|++++|.+.+++. .. +.+...|..+..++...|++++|+..+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555543 223 3456666777777777777777777665 22 2346678888888888888888888888888
Q ss_pred cCCCC
Q 038364 900 KLEPC 904 (1076)
Q Consensus 900 ~l~P~ 904 (1076)
++.|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 87764
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.13 E-value=0.1 Score=65.21 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=100.5
Q ss_pred HhCCCHHHHHH-HHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHH
Q 038364 578 VKNDCLQNAQE-VFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVII 656 (1076)
Q Consensus 578 ~k~g~~~~A~~-lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf 656 (1076)
...+++++|.+ ++..++.+ .....++..+.+.|..++|+++.+.-. .-.......|++++|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHH
Confidence 45678888877 66444411 122677777888888888887664221 1134456789999999887
Q ss_pred HHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCC
Q 038364 657 HHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIK 736 (1076)
Q Consensus 657 ~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~ 736 (1076)
+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...++.+...++.+.+...|
T Consensus 676 ~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~--- 737 (814)
T 3mkq_A 676 TDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG--- 737 (814)
T ss_dssp TTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT---
T ss_pred Hhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence 655 3678899999999999999999999998853 3444445555666666655555555433
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHh
Q 038364 737 DAYVATGLIDMYSKSGNLKSAREVFRK 763 (1076)
Q Consensus 737 d~~~~~~Li~~y~k~G~~~~A~~vf~~ 763 (1076)
-++.-...|.++|++++|.+++.+
T Consensus 738 ---~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 ---KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---chHHHHHHHHHcCCHHHHHHHHHH
Confidence 223444556667777777766544
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.02 E-value=0.052 Score=60.24 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=89.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHH--HcCC---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc
Q 038364 744 LIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFA--IYGN---GKEAILLFHELLETGFQPDAI-TFTALLAACKNS 817 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~--~~g~---~~~Al~l~~~M~~~g~~Pd~~-t~~~ll~a~~~~ 817 (1076)
++.+..-.-...++.+.... ...+...|...+.+.. ..+. ..+|+.+|++..+ ..|+.. .+..+.-++.
T Consensus 170 I~~aL~~~l~~~e~~r~~~~-~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~-- 244 (372)
T 3ly7_A 170 LSKALNQPWPQRMQETLQKI-LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDI-- 244 (372)
T ss_dssp HHHHTTCCCCHHHHHHHHHH-SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH--
T ss_pred HHHHhCchhhHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH--
Confidence 33333333333333333333 3456777777765543 2333 4789999999998 688854 3333333332
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP-FKPDATIWGALLGSCRIHGHLEYAEIASR 896 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~ 896 (1076)
..... + |.... . +. .+.+|.+-...+. .+.++.+|.++.......|++++|...++
T Consensus 245 --------~~~~~----~--~~~~~--~-~~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~ 301 (372)
T 3ly7_A 245 --------VRHSQ----H--PLDEK--Q-LA------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAIN 301 (372)
T ss_dssp --------HHHHH----S--CCCHH--H-HH------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --------HHhcc----C--CCchh--h-HH------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 00000 1 11100 0 00 1122333223332 23456666666666666677777777777
Q ss_pred HHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 897 RLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 897 ~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
++++++|+ ...|..++.++.-.|++++|.+.+++.....
T Consensus 302 rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 302 TGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 77777763 4566777777777777777777777765554
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.94 E-value=0.0047 Score=60.11 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=37.5
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCchHHHHHHHHHhcCCCCCc
Q 038364 856 LDEAWDFIRTM-PFKP-DATIWGALLGSCRIH-----------GHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 856 l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~-----------g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
+++|+..|++. .+.| +...|..+..+|... |++++|+..|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 34666666664 3344 345677777777665 589999999999999999974
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.90 E-value=0.025 Score=49.61 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=59.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCCh
Q 038364 846 MVDLLGKAGYLDEAWDFIRTM-PFKP-DAT-IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRW 922 (1076)
Q Consensus 846 li~~l~r~G~l~eA~~l~~~m-~~~p-d~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~ 922 (1076)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888876 2334 556 88888889999999999999999999999998877632 445
Q ss_pred HHHHHHHHHH
Q 038364 923 EDVERLRHSM 932 (1076)
Q Consensus 923 ~eA~~~~~~m 932 (1076)
.+|...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.66 E-value=0.019 Score=50.51 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=54.0
Q ss_pred HHHHHHHcCCchHHHHHHHHHhcCCCCCch-hHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 878 LLGSCRIHGHLEYAEIASRRLFKLEPCNSA-NYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 878 Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~-~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
....+...|++++|+..++++++.+|+++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999999999999999 99999999999999999999999987654
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.61 E-value=0.062 Score=61.88 Aligned_cols=68 Identities=18% Similarity=0.007 Sum_probs=43.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM---------PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS 906 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m---------~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~ 906 (1076)
+++.+..+|...|++++|+.++++. +..|+.. +++.|...|...|++++|+..++++++ +.|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444555555555555555555443 2344433 677888888888888888888888775 467776
Q ss_pred hhH
Q 038364 907 ANY 909 (1076)
Q Consensus 907 ~~y 909 (1076)
.+-
T Consensus 411 ~~~ 413 (429)
T 3qwp_A 411 LIE 413 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.60 E-value=0.067 Score=66.92 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=88.0
Q ss_pred hcCCHHHHHH-HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038364 750 KSGNLKSARE-VFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFD 828 (1076)
Q Consensus 750 k~G~~~~A~~-vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~ 828 (1076)
..+++++|.+ ++..++. ......++..+.+.|..++|+++.++... - .......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------~----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQDQ--------K----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------H----HHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcch--------h----eehhhhcCCHHHHHHHHH
Confidence 4567777766 4433320 11226666677777777777765532111 1 122345678888877654
Q ss_pred HhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038364 829 SMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMPF----------KPDATIWGALLGSCRIHGHLEYAEIASRRL 898 (1076)
Q Consensus 829 ~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~~----------~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l 898 (1076)
.+ .+...|..+.+++.+.|+++.|++.|.+++. .-+...+..+.......|+++.|..++.+.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence 33 3456778888888888888888888877642 112222333344444455555555444432
Q ss_pred hcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 899 FKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 899 ~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
+-+....++|.+.++|++|..+.++.
T Consensus 750 --------g~~~~a~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 750 --------GDIQGAKDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp --------TCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred --------CCHHHHHHHHHHcCChHHHHHHHHHh
Confidence 22344566677777777777766653
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.55 E-value=0.038 Score=63.66 Aligned_cols=67 Identities=7% Similarity=-0.049 Sum_probs=41.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHhc-----CCCCCc
Q 038364 842 HYSCMVDLLGKAGYLDEAWDFIRTM---------PFKPDAT-IWGALLGSCRIHGHLEYAEIASRRLFK-----LEPCNS 906 (1076)
Q Consensus 842 ~y~~li~~l~r~G~l~eA~~l~~~m---------~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~~~l~~-----l~P~~~ 906 (1076)
+++.|..+|...|++++|+.++++. +..|+.. +++.|...|..+|++++|+.+++++++ +.|+++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444455555555554444443 2345543 678888888888888888888888776 367665
Q ss_pred hh
Q 038364 907 AN 908 (1076)
Q Consensus 907 ~~ 908 (1076)
.+
T Consensus 422 ~~ 423 (433)
T 3qww_A 422 YI 423 (433)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.89 E-value=0.099 Score=58.04 Aligned_cols=39 Identities=5% Similarity=-0.083 Sum_probs=34.5
Q ss_pred HhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 898 LFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 898 l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
..+.+|.++.+|..++..+...|++++|...++++.+.+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 346789999999999999988999999999999998775
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.80 E-value=1.7 Score=40.31 Aligned_cols=140 Identities=13% Similarity=0.072 Sum_probs=91.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038364 780 AIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEA 859 (1076)
Q Consensus 780 ~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA 859 (1076)
...|..++..++..+.... .+..-++-++.-...+-+-+-..+.++.+-+-+.+.+ +|.+...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHH
Confidence 3456677777777776652 2333444455444445555556666666644433332 3444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Q 038364 860 WDFIRTMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVK 938 (1076)
Q Consensus 860 ~~l~~~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~ 938 (1076)
...+-.+. .+..-....++....+|.-|+-.++...++.-+|-+++...-++++|.+.|...+|.+++++.=++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444433 233344556777888899999999998876666667889999999999999999999999999999975
No 221
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.72 E-value=0.063 Score=47.55 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 038364 770 ASWNCMIMGFAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSM 830 (1076)
Q Consensus 770 ~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m 830 (1076)
..|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444444444444444442 222 223344444444444444444444443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.44 E-value=0.15 Score=48.98 Aligned_cols=65 Identities=3% Similarity=-0.162 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCC-C-CCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 870 PDATIWGALLGSCRIHG---HLEYAEIASRRLFKLE-P-CNSANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g---~~e~A~~~~~~l~~l~-P-~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
++..+.-.+..++.+.+ ++++|+.+++.+++.+ | ++.+.++.|+-.|.+.|++++|.+.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45555555555555555 4446666666666655 4 3345556666666666666666666666543
No 223
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.96 E-value=0.0011 Score=74.82 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=139.8
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038364 328 DVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACA 407 (1076)
Q Consensus 328 d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~ 407 (1076)
.+.+|+.|-.++.+.|.+.+|...|-+ . .|...|..+|....+.|.+++-+..+...++..-.|. .=+.++-+++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A-~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--A-DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--C-SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--C-CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence 345666676777666766666655522 2 4566677777777777777777776654444322222 2235666677
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 038364 408 KVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNK 487 (1076)
Q Consensus 408 ~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~ 487 (1076)
+.+++.+-.++.. .||+.-...+-+-+...|.++.|+-+|..+.. |.-|-+.+.+.|++..|.+.-++
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666554333221 24444344555566666666666666665542 22222333444444444332211
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCC-Cc
Q 038364 488 MNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLD-YD 566 (1076)
Q Consensus 488 M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~-~d 566 (1076)
. -++.||..+-.+|...+.+.-|.-.--.+.-. || .+..++.-|-+.|.+++-..+++..+ |++ ..
T Consensus 196 A------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAH 262 (624)
T 3lvg_A 196 A------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAH 262 (624)
T ss_dssp C------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCC
T ss_pred c------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchh
Confidence 1 15567777777777777666554443333311 11 12233344455565555555554443 222 34
Q ss_pred hhHHHHHHHHHHhCCCHHHHHHHHhh----cCCC-------CHhHHHHHHHHHHhcCChHHHHH
Q 038364 567 LYVGTSLMDMYVKNDCLQNAQEVFDN----MKNR-------NIVAWNSLISGYCFKGLFVNAKK 619 (1076)
Q Consensus 567 ~~v~~aLi~~y~k~g~~~~A~~lf~~----m~~~-------d~~~~n~lI~~~~~~g~~~~A~~ 619 (1076)
..+++-|.-.|+|- +.++-++-++. +.-| ....|.-++-.|++..+++.|..
T Consensus 263 mGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 263 MGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 56677777778775 23333333322 2212 34567777777887777776654
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.84 E-value=0.18 Score=45.13 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHH
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTMP---------FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYN 910 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m~---------~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~ 910 (1076)
...+..|...+.+.|+++.|..+++..- -.+...++..|..++.+.|+++.|...++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445567777778888888877776641 1234668899999999999999999999999999999976654
Q ss_pred HHH
Q 038364 911 LMM 913 (1076)
Q Consensus 911 ~L~ 913 (1076)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.57 E-value=0.13 Score=54.80 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=65.2
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCchHHHHHHHHHhcCCCCC-chhHHHHHHHHHHc-CChHHH
Q 038364 857 DEAWDFIRTM-PFKPD---ATIWGALLGSCRI-----HGHLEYAEIASRRLFKLEPCN-SANYNLMMNLLAMS-NRWEDV 925 (1076)
Q Consensus 857 ~eA~~l~~~m-~~~pd---~~~~~~Ll~a~~~-----~g~~e~A~~~~~~l~~l~P~~-~~~y~~L~~~y~~~-G~~~eA 925 (1076)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++.+++.|++. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555443 34565 5578888888877 499999999999999999975 99999999999985 999999
Q ss_pred HHHHHHHHhCCCc
Q 038364 926 ERLRHSMDEVGVK 938 (1076)
Q Consensus 926 ~~~~~~m~~~g~~ 938 (1076)
.+.+++.......
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 9999998776543
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.32 E-value=0.2 Score=48.17 Aligned_cols=35 Identities=23% Similarity=-0.001 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCch
Q 038364 873 TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSA 907 (1076)
Q Consensus 873 ~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~ 907 (1076)
..+-.|.-+|.+.|++++|++.++.+++++|+|..
T Consensus 72 d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 72 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 35566777889999999999999999999998743
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.09 E-value=3.7 Score=40.34 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=68.4
Q ss_pred HHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038364 746 DMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWK 825 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~ 825 (1076)
+.-..+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888887766 4567888888888888888888888887654 2333334555677666555
Q ss_pred HHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038364 826 YFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDEAWDFIRTMP 867 (1076)
Q Consensus 826 ~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~eA~~l~~~m~ 867 (1076)
+-+....+ .-++.-...+.-.|+++++.+++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 44333322 134444555666777777777777664
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.52 E-value=0.48 Score=41.40 Aligned_cols=77 Identities=10% Similarity=-0.007 Sum_probs=56.9
Q ss_pred CCcccHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHH
Q 038364 838 PTIEHYSCMVDLLGKAGY---LDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLM 912 (1076)
Q Consensus 838 p~~~~y~~li~~l~r~G~---l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L 912 (1076)
+++..+..+..++...+. .++|..++++. ...| +...+..+...+...|++++|+..++++++.+|. ...+..+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHH
Confidence 456677777777765554 68888888886 3445 4557777788899999999999999999999998 4444444
Q ss_pred HHH
Q 038364 913 MNL 915 (1076)
Q Consensus 913 ~~~ 915 (1076)
...
T Consensus 83 ~~~ 85 (93)
T 3bee_A 83 IES 85 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.16 E-value=8.1 Score=37.86 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=31.6
Q ss_pred hhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHh
Q 038364 643 YSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQ 695 (1076)
Q Consensus 643 y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~ 695 (1076)
...+|+++.|.++-+.+ .+...|..|.+...+.|+++-|.+.|.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34567777777776655 255667777777777777777777777664
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.38 E-value=51 Score=41.03 Aligned_cols=23 Identities=4% Similarity=-0.025 Sum_probs=11.1
Q ss_pred HHHHHHHccCCcHHHHHHHHHHH
Q 038364 401 KMLQACAKVGAFHEGKQIHGYVL 423 (1076)
Q Consensus 401 ~ll~a~~~~g~~~~a~~i~~~~~ 423 (1076)
.+++...+.++.+.+.+++..++
T Consensus 235 ~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 235 TLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444555555555555444
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.24 E-value=13 Score=34.60 Aligned_cols=86 Identities=5% Similarity=-0.094 Sum_probs=64.8
Q ss_pred hhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHH
Q 038364 644 SIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGK 723 (1076)
Q Consensus 644 ~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~ 723 (1076)
..||++......+-.+ ..+......-++.+...|+-++-.+++.++.. ..+|+......+..||.+.|+..++.
T Consensus 72 s~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~ 145 (172)
T 1wy6_A 72 DKCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDAT 145 (172)
T ss_dssp GGCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHH
Confidence 4567777766666665 23566777778888888888888888888644 35677888888888888888888888
Q ss_pred HHHHHHHHcCCC
Q 038364 724 EIHCLCLKNGFI 735 (1076)
Q Consensus 724 ~i~~~~~~~g~~ 735 (1076)
+++.++-+.|+.
T Consensus 146 eLl~~AC~kG~k 157 (172)
T 1wy6_A 146 TLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHhhhH
Confidence 888888887754
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.61 E-value=1.7 Score=38.56 Aligned_cols=65 Identities=8% Similarity=-0.067 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC-------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 871 DATIWGALLGSCRIHGHLEYAEIASRRLFKLE-------PCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 871 d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~-------P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
+..-...|...+...|+++.|...++++++.. +..+..|..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34456678888999999999999999998752 234567999999999999999999999998543
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.15 E-value=2.1 Score=39.55 Aligned_cols=86 Identities=16% Similarity=-0.043 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHHcCCchH
Q 038364 818 GLVEEGWKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYLDE---AWDFIRTMP-FK-P--DATIWGALLGSCRIHGHLEY 890 (1076)
Q Consensus 818 g~~~eA~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l~e---A~~l~~~m~-~~-p--d~~~~~~Ll~a~~~~g~~e~ 890 (1076)
..+...++-|...... |. |+..+--.+..++.++...++ +..++++.- .. | .....-.|.-++.+.|+++.
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444444332 22 455555555566666665544 555555542 11 2 11123334445666666666
Q ss_pred HHHHHHHHhcCCCCC
Q 038364 891 AEIASRRLFKLEPCN 905 (1076)
Q Consensus 891 A~~~~~~l~~l~P~~ 905 (1076)
|++.++.+++++|+|
T Consensus 93 A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCC
Confidence 666666666666655
No 234
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.06 E-value=41 Score=36.51 Aligned_cols=168 Identities=11% Similarity=0.015 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHH
Q 038364 331 LKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLF----REMQFSSAKAISRTIVKMLQAC 406 (1076)
Q Consensus 331 ~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf----~~M~~~g~~p~~~t~~~ll~a~ 406 (1076)
.+-++.+-|.+.+++++|..+.-.- ...+.++|....|-++- +-..+.++++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456667788899999998875331 12355667766665554 4444667888888877777777
Q ss_pred HccCCcH-----HHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChH
Q 038364 407 AKVGAFH-----EGKQIHGYVLKSA--LESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVD 479 (1076)
Q Consensus 407 ~~~g~~~-----~a~~i~~~~~~~g--~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~ 479 (1076)
.....-+ ...+...+-.+.| ..-|+.....+-..|.+.+++.+|+.-|-.-.++.+..+..|+.-+.+.+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 6554321 1222333334444 34577888889999999999999998885322223356655555554444333
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 038364 480 VAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQS 525 (1076)
Q Consensus 480 ~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~ 525 (1076)
++--++-+ .+--|.-.++...|..+++...+
T Consensus 185 e~dlfiaR---------------aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLYCAR---------------AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHH---------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 32222221 12235556677777776665543
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.64 E-value=1.3 Score=53.93 Aligned_cols=52 Identities=15% Similarity=-0.010 Sum_probs=49.5
Q ss_pred HHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 881 SCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 881 a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
-|...|+++.|+.+++++...-|.+..++..|+.+|...|+|+.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3678899999999999999999999999999999999999999999999988
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.37 E-value=44 Score=35.96 Aligned_cols=83 Identities=7% Similarity=0.048 Sum_probs=52.4
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHhcCCCChHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038364 736 KDAYVATGLIDMYSKSGNLKSAREVFRKSANKTLASWNCMIMGFAIY---GNGKEAILLFHELLETGFQPDAITFTALLA 812 (1076)
Q Consensus 736 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~s~n~li~~~~~~---g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~ 812 (1076)
-|+.....+...|.+.|++.+|+.-|-.....|...+..|+.-+.+. |...++--..- .++|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL- 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVF- 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHH-
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHH-
Confidence 47788889999999999999999988633323455555554444333 44433221111 1222
Q ss_pred HHHhcCCHHHHHHHHHHhhhc
Q 038364 813 ACKNSGLVEEGWKYFDSMSTD 833 (1076)
Q Consensus 813 a~~~~g~~~eA~~~~~~m~~~ 833 (1076)
-|...|++..|..+|+...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 245678999999998877543
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.31 E-value=3.8 Score=37.78 Aligned_cols=86 Identities=8% Similarity=-0.013 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhcCCCCC--CcccHHHHHHHHHhcCCHH
Q 038364 783 GNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEE---GWKYFDSMSTDYNIIP--TIEHYSCMVDLLGKAGYLD 857 (1076)
Q Consensus 783 g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~e---A~~~~~~m~~~~g~~p--~~~~y~~li~~l~r~G~l~ 857 (1076)
.....+.+-|.+....|. |+..|-..+..++.++...++ |+.+++.+.+. -.| ..+..-.|.-++.|.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 334445555555555443 666665566677777776555 77777777653 113 2334445666778888888
Q ss_pred HHHHHHHhC-CCCCC
Q 038364 858 EAWDFIRTM-PFKPD 871 (1076)
Q Consensus 858 eA~~l~~~m-~~~pd 871 (1076)
+|.+.++.+ ..+|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 888888776 34554
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.69 E-value=17 Score=34.12 Aligned_cols=65 Identities=5% Similarity=-0.140 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCCCCC-chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 870 PDATIWGALLGSCRIHG---HLEYAEIASRRLFKLEPCN-SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 870 pd~~~~~~Ll~a~~~~g---~~e~A~~~~~~l~~l~P~~-~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
|+..+--.+..++.+.. +..+|+.+++.++..+|.+ -+....|+-.+.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444433 2345666666666555532 24455566666666666666666666643
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=83.63 E-value=4.2 Score=43.34 Aligned_cols=126 Identities=13% Similarity=0.057 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHhhcCCCCH--hHHHHHHH-HHHhc--CC------hHHHHHHHHHHHHcCCCCC---ccchhhhhhhhhh
Q 038364 580 NDCLQNAQEVFDNMKNRNI--VAWNSLIS-GYCFK--GL------FVNAKKMLNQMEEEEIKPD---LVSWNSLVSGYSI 645 (1076)
Q Consensus 580 ~g~~~~A~~lf~~m~~~d~--~~~n~lI~-~~~~~--g~------~~~A~~lf~~M~~~g~~pd---~~t~~~Li~~y~k 645 (1076)
.++..+-...+.+....|+ ..|..++. +++.. |. ..+|..++++..+. .|+ ...|..|...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 3444444555555554444 45776665 34442 32 45666666666655 455 4577888888888
Q ss_pred -----cCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcC-CChhHHHHHHHHHhhcCCC--CChhhHH
Q 038364 646 -----WGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQN-ENYRESLKFFIQMQQEDIK--PNSTTMS 707 (1076)
Q Consensus 646 -----~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~-g~~~eAl~l~~~m~~~gi~--pd~~t~~ 707 (1076)
-|+.++|.+.|++..+.+..-+..++....+.+++. |+.++|.+.+++.+..... |+....+
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 489999999999988853323478888888888884 8899999999999887666 6544333
No 240
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.51 E-value=64 Score=34.97 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=50.5
Q ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccchhhhhhhh
Q 038364 564 DYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSWNSLVSGY 643 (1076)
Q Consensus 564 ~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~~y 643 (1076)
.-|+.....+...|.+.+++.+|+.-|-.-.+++...+..|+.-+.+.+...++--.+-+ .+-.|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR---------------aVL~y 197 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCAR---------------AVLPY 197 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH---------------HHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHH---------------HHHHH
Confidence 346777788889999999999999988532222335665555554444433222211111 12245
Q ss_pred hhcCChhHHHHHHHHhHh
Q 038364 644 SIWGQSKEALVIIHHMKN 661 (1076)
Q Consensus 644 ~k~g~~~~A~~lf~~m~~ 661 (1076)
.-.+++..|..+|+...+
T Consensus 198 L~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 198 LLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 556788888887776654
No 241
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.12 E-value=64 Score=34.68 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=53.7
Q ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCccchhhhhh
Q 038364 565 YDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFK---GLFVNAKKMLNQMEEEEIKPDLVSWNSLVS 641 (1076)
Q Consensus 565 ~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~---g~~~~A~~lf~~M~~~g~~pd~~t~~~Li~ 641 (1076)
-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+.+. |...++--..-+. +-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra---------------VL 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL---------------VF 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---------------HH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH---------------HH
Confidence 36777888899999999999999988733323566666666655554 5554432222221 22
Q ss_pred hhhhcCChhHHHHHHHHhHh
Q 038364 642 GYSIWGQSKEALVIIHHMKN 661 (1076)
Q Consensus 642 ~y~k~g~~~~A~~lf~~m~~ 661 (1076)
.|.-.|++..|..+|+...+
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 34456788888888887653
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.74 E-value=80 Score=35.83 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=91.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc-----cchhhhhhhhhhcCChhHHHHHHHHhHh----cCCCCc--hHH
Q 038364 602 NSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL-----VSWNSLVSGYSIWGQSKEALVIIHHMKN----SGIYPN--VVT 670 (1076)
Q Consensus 602 n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~-----~t~~~Li~~y~k~g~~~~A~~lf~~m~~----~gi~pd--~~t 670 (1076)
..|...|-..|++.+|.+++.++...-...+. ..+...+..|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44666777778888888888777644222222 2345566777888888888888877642 111222 245
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHhhc-CCCCChhhHHHHHH----HHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHH
Q 038364 671 WTSLISGSLQNENYRESLKFFIQMQQE-DIKPNSTTMSSLLQ----TCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLI 745 (1076)
Q Consensus 671 y~~LI~~~~~~g~~~eAl~l~~~m~~~-gi~pd~~t~~~lL~----a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li 745 (1076)
|..++..+...+++.+|.+.|.+..+. ...-|...+..++. +..-.+.-..-..+.....+....++...+..|+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 677788888888888888888777542 11122222222221 1111121122222222222222234566677777
Q ss_pred HHHhhc--CCHHHHHHHHHhcCC
Q 038364 746 DMYSKS--GNLKSAREVFRKSAN 766 (1076)
Q Consensus 746 ~~y~k~--G~~~~A~~vf~~m~~ 766 (1076)
.+|... .+++.+.+.|.....
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHhchHhhhHHHHHHHHHHhc
Confidence 777654 456666666655443
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.97 E-value=16 Score=44.43 Aligned_cols=120 Identities=8% Similarity=-0.031 Sum_probs=75.0
Q ss_pred hcCC-hhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCCC-hhHHHHHHHHHhhc------CCCCChh-----------h
Q 038364 645 IWGQ-SKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNEN-YRESLKFFIQMQQE------DIKPNST-----------T 705 (1076)
Q Consensus 645 k~g~-~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g~-~~eAl~l~~~m~~~------gi~pd~~-----------t 705 (1076)
-.|+ ++.|..+|+++.+....-+......+|..+.+.++ --+|.+++.+..+. ...+... .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3445 57788888888775322222223344444444432 23566666554321 1222111 1
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHhcC
Q 038364 706 MSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSKSGNLKSAREVFRKSA 765 (1076)
Q Consensus 706 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 765 (1076)
+..-..-|...|+++.|.++....+.. ...+-.+|..|...|.+.|+++.|.-.++.++
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 111123356789999999999998884 33457889999999999999999999999886
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=75.68 E-value=18 Score=34.31 Aligned_cols=116 Identities=8% Similarity=-0.042 Sum_probs=64.6
Q ss_pred CCCChhHHHHHHHHHHhCCCh------HHHHHHHHHHHhCCCCCCh-hhHHHHHH------HHHhcCChhhHHHHHHHHH
Q 038364 458 KDHNLSSWNSMISSYTGLGYV------DVAWSLFNKMNSSRIQPDI-ITWNCLLS------GHFTHGSYQNVLTLLRGMQ 524 (1076)
Q Consensus 458 ~~~d~~s~n~lI~~~~~~g~~------~~A~~lf~~M~~~g~~pd~-~ty~~Li~------~~~~~g~~~~Al~l~~~m~ 524 (1076)
...|..+|-..+.-.-+.|++ ++.+++|++.... ++|+. ..|..-|. .+...++.++|.++|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345666777777777777877 7777777776553 33332 11111111 1122367778888888776
Q ss_pred hcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 038364 525 SLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMD 575 (1076)
Q Consensus 525 ~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~ 575 (1076)
+..-+- ...+.....-=.+.|++..|+++++..+..+..|...+-+++-+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 642111 11121112222467788888888888777776665554444433
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=74.73 E-value=1.8e+02 Score=36.31 Aligned_cols=264 Identities=13% Similarity=0.064 Sum_probs=126.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCccc--hhhhhhhhhhcCChhHHHHHHHHhHhcCC-------CCchHHHHHHHHH
Q 038364 607 GYCFKGLFVNAKKMLNQMEEEEIKPDLVS--WNSLVSGYSIWGQSKEALVIIHHMKNSGI-------YPNVVTWTSLISG 677 (1076)
Q Consensus 607 ~~~~~g~~~~A~~lf~~M~~~g~~pd~~t--~~~Li~~y~k~g~~~~A~~lf~~m~~~gi-------~pd~~ty~~LI~~ 677 (1076)
|....|+.++++.++......+-..+..+ =..+.-+...+|.-+++..++.......- .+.+.+-.+|--|
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45667777777777665442110011111 12223334455555566666655443210 1223334444445
Q ss_pred HhcCCCh-hHHHHHHHHHhhcCCCCChhh--HH--HHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHh--h
Q 038364 678 SLQNENY-RESLKFFIQMQQEDIKPNSTT--MS--SLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYS--K 750 (1076)
Q Consensus 678 ~~~~g~~-~eAl~l~~~m~~~gi~pd~~t--~~--~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~--k 750 (1076)
+.-.|.- +++.+.+..+.... +..+ .. ++-..+...|+-+....++..+.+.. +..+...++-+++ -
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 5545543 46667766665421 2111 11 12222345566666666666665531 2233333333333 5
Q ss_pred cCCHHHHHHHHHhcCC-CCh-HHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHH
Q 038364 751 SGNLKSAREVFRKSAN-KTL-ASWN---CMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLA--ACKNSGLVEEG 823 (1076)
Q Consensus 751 ~G~~~~A~~vf~~m~~-~d~-~s~n---~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~--a~~~~g~~~eA 823 (1076)
.|+.+.+..+.+.+.. .|. +-|. ++.-+|+-.|+......+++.+.+. ++...-...+- ++...|+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHH
Confidence 5666666666666542 333 3343 2345666777766666677777763 23222222222 33345555555
Q ss_pred HHHHHHhhhcCCCCCCcccHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHH
Q 038364 824 WKYFDSMSTDYNIIPTIEHYSCMVDLLGKAGYL-DEAWDFIRTMPFKPDATIWGALLGS 881 (1076)
Q Consensus 824 ~~~~~~m~~~~g~~p~~~~y~~li~~l~r~G~l-~eA~~l~~~m~~~pd~~~~~~Ll~a 881 (1076)
.++++.+.+. ..|.+..-.++.-+...+|.- .+|.+.+..+...+|..+-...+-+
T Consensus 614 ~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 614 PRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 6666555432 234333333343344444442 5667777776545555544333333
No 246
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.78 E-value=54 Score=33.70 Aligned_cols=59 Identities=8% Similarity=0.099 Sum_probs=25.5
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 038364 574 MDMYVKNDCLQNAQEVFDNMKN----RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDL 633 (1076)
Q Consensus 574 i~~y~k~g~~~~A~~lf~~m~~----~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~ 633 (1076)
+...++.|+.+-+..+++.... +|...++.+..+ +..+......++++.+.+.|..++.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~ 214 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNV 214 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCC
Confidence 3344455666655555544211 222222222222 2334444444555555555555443
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=72.40 E-value=25 Score=33.38 Aligned_cols=106 Identities=14% Similarity=0.074 Sum_probs=60.1
Q ss_pred CCCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCccc-hhhhhhh------hhhcCChhHHHHHHHHhH
Q 038364 594 KNRNIVAWNSLISGYCFKGLF------VNAKKMLNQMEEEEIKPDLVS-WNSLVSG------YSIWGQSKEALVIIHHMK 660 (1076)
Q Consensus 594 ~~~d~~~~n~lI~~~~~~g~~------~~A~~lf~~M~~~g~~pd~~t-~~~Li~~------y~k~g~~~~A~~lf~~m~ 660 (1076)
...|..+|-..+.-.-+.|+. ++..++|++.... ++|+... |..-|.. +...+++++|.++|+.+.
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 346778888888888888888 7777888877653 4454311 1111111 122367777777777765
Q ss_pred hcCCCCchHHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCC
Q 038364 661 NSGIYPNVVTWTSLISGSLQNENYRESLKFFIQMQQEDIKP 701 (1076)
Q Consensus 661 ~~gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~~~gi~p 701 (1076)
+..-.- ...|-....--.+.|+...|.+++.+....+.+|
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 431111 4445444444555666666666666665544333
No 248
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=71.15 E-value=1.8e+02 Score=34.78 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCC---CChhHHHHHHHHHHhC
Q 038364 433 VCNCLISMYSRNNKLELATRVFDSMKD---HNLSSWNSMISSYTGL 475 (1076)
Q Consensus 433 v~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~lI~~~~~~ 475 (1076)
+| ++|--+.|||++++|.++..+... .-...+-..+..|+.+
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 44 466677899999999998887642 1113555666667643
No 249
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=70.79 E-value=1.8e+02 Score=34.71 Aligned_cols=84 Identities=8% Similarity=0.031 Sum_probs=44.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHHHHhh--
Q 038364 673 SLISGSLQNENYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLIDMYSK-- 750 (1076)
Q Consensus 673 ~LI~~~~~~g~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~~y~k-- 750 (1076)
.....+.-.|++|.|++++-+. ...|.+.+...|..+.-.+ ....++..- .+ .| ..-+..||..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~---~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFK---IDSSTRLTK--KP-KR-DIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCcc---CCCcccccC--CC-cc-cccHHHHHHHHHHHh
Confidence 3456667789999999987755 3456666666555543332 211111110 00 11 2235567777765
Q ss_pred -cCCHHHHHHHHHhcCCC
Q 038364 751 -SGNLKSAREVFRKSANK 767 (1076)
Q Consensus 751 -~G~~~~A~~vf~~m~~~ 767 (1076)
..+..+|.+.|--+.-+
T Consensus 368 ~~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTTCHHHHHHHHHGGGGS
T ss_pred hcCCHHHHHHHHHHHhcc
Confidence 47788888877665433
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=69.98 E-value=43 Score=31.40 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 875 WGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 875 ~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.--|.-++.+.|++++|++..+.+++++|+|.
T Consensus 80 LYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 80 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 34456678999999999999999999999873
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.17 E-value=34 Score=29.88 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=55.9
Q ss_pred CCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 038364 410 GAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMN 489 (1076)
Q Consensus 410 g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~ 489 (1076)
..-++|.-|-+.+...+- ...+--.-+..+.+.|++++|..+.+..+-||+++|-++-.+ +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 355667777777666653 333333344556788999999999999999999999887654 5577777777776776
Q ss_pred hCC
Q 038364 490 SSR 492 (1076)
Q Consensus 490 ~~g 492 (1076)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 654
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=68.17 E-value=7.8 Score=43.49 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCccCc
Q 038364 875 WGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDE-----VGVKSVL 941 (1076)
Q Consensus 875 ~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~-----~g~~~~~ 941 (1076)
...++.++...|+.+++...++.++..+|-+-..|..|..+|.+.|+..+|.+.++..++ .|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345667778889999999999999999999988999999999999999999999888644 3665443
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=67.92 E-value=27 Score=32.35 Aligned_cols=33 Identities=24% Similarity=0.163 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCc
Q 038364 874 IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNS 906 (1076)
Q Consensus 874 ~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~ 906 (1076)
.+--|.-|+.+.|+++.|++..+.+++++|+|.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 455666788899999999999999999999874
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.34 E-value=1.8e+02 Score=32.77 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhcC-CCC--CC--ccc
Q 038364 773 NCMIMGFAIYGNGKEAILLFHELLET--GFQPDA---ITFTALLAACKNSGLVEEGWKYFDSMSTDY-NII--PT--IEH 842 (1076)
Q Consensus 773 n~li~~~~~~g~~~~Al~l~~~M~~~--g~~Pd~---~t~~~ll~a~~~~g~~~eA~~~~~~m~~~~-g~~--p~--~~~ 842 (1076)
..|...|-..|++.+|..++.++..+ |..+.. ..+...+..|...+++.+|..++.++.... ... |+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34666777778888887777776632 222221 244555666888999999999888874321 112 22 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 038364 843 YSCMVDLLGKAGYLDEAWDFIRTM 866 (1076)
Q Consensus 843 y~~li~~l~r~G~l~eA~~l~~~m 866 (1076)
|.+++..+...+++.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 778899999999999998877665
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.26 E-value=33 Score=29.90 Aligned_cols=79 Identities=13% Similarity=0.058 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 038364 410 GAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMN 489 (1076)
Q Consensus 410 g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~ 489 (1076)
..-++|..|-+.+...+- ...+--.-+..+.+.|++++|..+.+..+-||+++|-++-.+ +.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 355667777776666553 333333344556788999999999999999999999887653 5677777777777776
Q ss_pred hCC
Q 038364 490 SSR 492 (1076)
Q Consensus 490 ~~g 492 (1076)
..|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 664
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=64.94 E-value=43 Score=29.38 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHH
Q 038364 683 NYRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLID 746 (1076)
Q Consensus 683 ~~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~ 746 (1076)
+.-++.+-++.+....+.|++....+.|.||.+.+++..|.++++-+... ......+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34466666777777788899999999999999999999999888877654 2233445555543
No 257
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.16 E-value=51 Score=33.89 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=8.8
Q ss_pred HHHhhcCCHHHHHHHHH
Q 038364 746 DMYSKSGNLKSAREVFR 762 (1076)
Q Consensus 746 ~~y~k~G~~~~A~~vf~ 762 (1076)
...++.|+.+-+..+++
T Consensus 224 ~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33444555555555555
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=64.11 E-value=14 Score=41.41 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=40.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh-----cCCCCCc
Q 038364 467 SMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQS-----LGFRPNG 532 (1076)
Q Consensus 467 ~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~-----~gi~pd~ 532 (1076)
.++..+...|++++|+..+..+....+- +...|..+|.++.+.|+..+|++.|++..+ .|+.|..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3455556666666666666666554433 666667777777777777777766666543 3666653
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=63.32 E-value=20 Score=31.46 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 866 MPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 866 m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
+..-|++.+..+.|.||++.+|+..|.++++-+...-.+....|-.+.
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 457799999999999999999999999999988765433345565544
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.86 E-value=55 Score=28.58 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 547 LLKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 547 ~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
..++|..|-+.+...+- ...+--.-+..+...|++++|..+.+.+..||.+.|-++-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45566666666655544 333333334456778888899888888888888888776543 55666666666655554
Q ss_pred cC
Q 038364 627 EE 628 (1076)
Q Consensus 627 ~g 628 (1076)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=61.44 E-value=36 Score=31.50 Aligned_cols=66 Identities=5% Similarity=-0.137 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCCCCC-chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 038364 869 KPDATIWGALLGSCRIHG---HLEYAEIASRRLFKLEPCN-SANYNLMMNLLAMSNRWEDVERLRHSMDE 934 (1076)
Q Consensus 869 ~pd~~~~~~Ll~a~~~~g---~~e~A~~~~~~l~~l~P~~-~~~y~~L~~~y~~~G~~~eA~~~~~~m~~ 934 (1076)
.|+..+--.+..++.+.. +..+|+.+++.+++.+|.. -+....|+-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455555555555655544 4567889999999888743 56788999999999999999999999854
No 262
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=60.40 E-value=62 Score=28.21 Aligned_cols=87 Identities=8% Similarity=-0.105 Sum_probs=62.3
Q ss_pred ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 038364 309 AFWLGVEVHASLIKRGFDFDVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQ 388 (1076)
Q Consensus 309 ~~~~a~~~~~~~~~~g~~~d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 388 (1076)
..++|.-|-+.+...|- ...|.-.-+..+...|++.+|..+.+...- ||.+.|-++-. .+.|..+++..-+.++.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~-pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPW-PALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCC-GGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCC-chHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 45566666666665553 333333344566789999999999999998 99999988865 47888888888887887
Q ss_pred HCCCCCCHHHHHH
Q 038364 389 FSSAKAISRTIVK 401 (1076)
Q Consensus 389 ~~g~~p~~~t~~~ 401 (1076)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555544
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=59.71 E-value=53 Score=31.63 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=57.1
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCCc-------ccHHHHHHHHHhcCCHHHHHHHHHhC--
Q 038364 798 TGFQPDAIT--FTALLAACKNSGLVEEGWKYFDSMSTDYNIIPTI-------EHYSCMVDLLGKAGYLDEAWDFIRTM-- 866 (1076)
Q Consensus 798 ~g~~Pd~~t--~~~ll~a~~~~g~~~eA~~~~~~m~~~~g~~p~~-------~~y~~li~~l~r~G~l~eA~~l~~~m-- 866 (1076)
.|+.|.... +..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|.+..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 355555443 2333444666677777766665544332223332 24455666666777776666666552
Q ss_pred --C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 038364 867 --P-FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 867 --~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
. +........++. . .... ..-..+ +.+.+.-.-++..|.+.|++++|..+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~ss~-------p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---SAST-------PQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc-c---cCCC-------cccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0 100000000000 0 0000 000011 223356677999999999999999998765
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.07 E-value=78 Score=40.84 Aligned_cols=210 Identities=9% Similarity=-0.011 Sum_probs=105.2
Q ss_pred HHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCc
Q 038364 333 CALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKVGAF 412 (1076)
Q Consensus 333 ~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~ 412 (1076)
..|+..+.+.+..+.|+.+..-.+. +..+--.+-..|...|++++|.++|.+.. .|+..+.... ...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~--~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~~~ 882 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS--DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC--CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------SSH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC--CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------hhh
Confidence 3455556667777777776655554 44433344456788999999999998742 2222111100 000
Q ss_pred HHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhCCChHHHHHHHH----hcCCCCh----hHHHHHHHHHHhCCChHHHH
Q 038364 413 HEGKQIHGYVLKSA--LESNLSVCNCLISMYSRNNKLELATRVFD----SMKDHNL----SSWNSMISSYTGLGYVDVAW 482 (1076)
Q Consensus 413 ~~a~~i~~~~~~~g--~~~d~~v~n~Li~~y~k~g~~~~A~~lf~----~m~~~d~----~s~n~lI~~~~~~g~~~~A~ 482 (1076)
. . ...+.... ...-..-|..++..+-+.+..+.+.++-. .....+. ..|..+..++...|++++|.
T Consensus 883 ~---~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 R---E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp H---H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred c---c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 0 0 00011100 01112235556666666666655554332 2222221 14677777777777777777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCh------------hhHHHHHHHHHhcC-CCCCcccHHHHHHHH-HhcCch
Q 038364 483 SLFNKMNSSRIQPDIITWNCLLSGHFTHGSY------------QNVLTLLRGMQSLG-FRPNGSSVSVVLQAV-TELRLL 548 (1076)
Q Consensus 483 ~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~------------~~Al~l~~~m~~~g-i~pd~~t~~~ll~a~-~~~g~~ 548 (1076)
..+-.+.....+ ......|+..++..|.. ++..+++....+.. ...+...|..+|-++ ...|++
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dy 1036 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNY 1036 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCCh
Confidence 777777655443 34555566666655443 34444443322211 111222355666654 345555
Q ss_pred HHH-HHHHHHHHHc
Q 038364 549 KYG-RESHGYILRN 561 (1076)
Q Consensus 549 ~~a-~~i~~~~~~~ 561 (1076)
..| .-+++++.+.
T Consensus 1037 R~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 1037 RDAAAIIYEKLSRY 1050 (1139)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 544 4455555543
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.50 E-value=1.3e+02 Score=33.42 Aligned_cols=23 Identities=26% Similarity=0.119 Sum_probs=12.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 038364 775 MIMGFAIYGNGKEAILLFHELLE 797 (1076)
Q Consensus 775 li~~~~~~g~~~~Al~l~~~M~~ 797 (1076)
++..|...|++.+|++++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44555555555555555555554
No 266
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.72 E-value=1.6e+02 Score=32.78 Aligned_cols=25 Identities=8% Similarity=-0.103 Sum_probs=15.4
Q ss_pred HHHHHHHccCChhhHHHHhhhcCCC
Q 038364 232 SLIFHYLEFGDFTSAAKAFFLYFSR 256 (1076)
Q Consensus 232 ~ll~~y~~~g~~~~A~~~f~~~~~~ 256 (1076)
+.+..-+..|+++-.+.+++.-..+
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~ 40 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASP 40 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCC
Confidence 3455556677777777777654433
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=54.01 E-value=72 Score=29.52 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHhhcCCCCChhhHHHHHHHHhcCCCchhHHHHHHHHHHcCCCCChhhHHHHHH
Q 038364 684 YRESLKFFIQMQQEDIKPNSTTMSSLLQTCGGLGLLQNGKEIHCLCLKNGFIKDAYVATGLID 746 (1076)
Q Consensus 684 ~~eAl~l~~~m~~~gi~pd~~t~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~~~~~Li~ 746 (1076)
.-+..+-++.+....+.|+.....+.|.+|.+.+++..|.++++-+... ..+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3356666777777788999999999999999999999999999877654 3333445655543
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.35 E-value=55 Score=42.25 Aligned_cols=53 Identities=11% Similarity=0.100 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 774 CMIMGFAIYGNGKEAILLFHELLETGFQPDAITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 774 ~li~~~~~~g~~~~Al~l~~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
.++..+..++..+-|.++..- .+-+...--.+..++...|++++|.++|.+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 466777888888777665432 22333332234446888999999999998764
No 269
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=49.02 E-value=1e+02 Score=30.45 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=9.5
Q ss_pred HHHHHhCCChHHHHHHHHhc
Q 038364 438 ISMYSRNNKLELATRVFDSM 457 (1076)
Q Consensus 438 i~~y~k~g~~~~A~~lf~~m 457 (1076)
+...++.|+.+-+..+++.-
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 33444455555555444443
No 270
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=47.33 E-value=86 Score=33.64 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 038364 863 IRTMPFKPDA--TIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEV 935 (1076)
Q Consensus 863 ~~~m~~~pd~--~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~ 935 (1076)
|...++.|.. .++.+-++.+.+++|+..|..++++++++.|.. ...++|.+++..-...
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcC
Confidence 3344555643 367778888999999999999999999999853 1346677777776544
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.12 E-value=39 Score=37.10 Aligned_cols=247 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 038364 466 NSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTEL 545 (1076)
Q Consensus 466 n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~ 545 (1076)
.++|.-|...|+.++|...+++|......|..+.-..-...=.+...-+.+-.++..+. .++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred Cc--------hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCHhHHHHHHHHHHhcCChH
Q 038364 546 RL--------LKYGRESHGYILRNGLDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKN--RNIVAWNSLISGYCFKGLFV 615 (1076)
Q Consensus 546 g~--------~~~a~~i~~~~~~~g~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~--~d~~~~n~lI~~~~~~g~~~ 615 (1076)
.+ .+..-.+...++..++-|-.++....... .-+.+.+++++... .....+..+-....-.|...
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~-----~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~ 211 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTV-----DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQ 211 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCCCSSS
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcc-----cchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCc
Q ss_pred HHHHHHHHHHHcCCCCCccchhhhhhhhhhcCChhHHHHHHHHhHhcCCCCchHHHHHHHHHHhcCC--ChhHHHHHHHH
Q 038364 616 NAKKMLNQMEEEEIKPDLVSWNSLVSGYSIWGQSKEALVIIHHMKNSGIYPNVVTWTSLISGSLQNE--NYRESLKFFIQ 693 (1076)
Q Consensus 616 ~A~~lf~~M~~~g~~pd~~t~~~Li~~y~k~g~~~~A~~lf~~m~~~gi~pd~~ty~~LI~~~~~~g--~~~eAl~l~~~ 693 (1076)
...++-+++. .++.-|...|+.++|.+.++++......+..+ ...+..++-+.+ ..+...+++..
T Consensus 212 ~veelkkki~------------~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V-~~av~~aLE~~~~~~re~~~~LL~~ 278 (358)
T 3eiq_C 212 PVNHLVKEID------------MLLKEYLLSGDISEAEHCLKELEVPHFHHELV-YEAIVMVLESTGESAFKMILDLLKS 278 (358)
T ss_dssp CHHHHHHHHH------------HHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHH-HHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHH------------HHHHHhccCCCHHHHHHHHHHccCCcchHHHH-HHHHHHHHccCchHHHHHHHHHHHH
Q ss_pred HhhcCCCCChhhHHHHHHHHhcCC----CchhHHHHHHHHHH
Q 038364 694 MQQEDIKPNSTTMSSLLQTCGGLG----LLQNGKEIHCLCLK 731 (1076)
Q Consensus 694 m~~~gi~pd~~t~~~lL~a~~~~g----~~~~a~~i~~~~~~ 731 (1076)
+...|+-+.......+...+.... ++..|..++..++.
T Consensus 279 L~~~glls~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~va 320 (358)
T 3eiq_C 279 LWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 320 (358)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHH
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=46.77 E-value=47 Score=30.72 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=38.9
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHH
Q 038364 865 TMPFKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMM 913 (1076)
Q Consensus 865 ~m~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~ 913 (1076)
.+..-|++.+..+.|.+|++.+|+..|.+++|-+...-.+....|-.+.
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3467899999999999999999999999999988764433345565544
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.37 E-value=2e+02 Score=28.41 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=11.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC
Q 038364 609 CFKGLFVNAKKMLNQMEEEEIKPD 632 (1076)
Q Consensus 609 ~~~g~~~~A~~lf~~M~~~g~~pd 632 (1076)
++.|+.+....+++.+.+.|..++
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCC
Confidence 344555544445544444444433
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=46.11 E-value=28 Score=36.40 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=33.2
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcCCCCC
Q 038364 849 LLGKAGYLDEAWDFIRTM-PFKP-DATIWGALLGSCRIHGHLEYAEIASRRLFKLEPCN 905 (1076)
Q Consensus 849 ~l~r~G~l~eA~~l~~~m-~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~ 905 (1076)
.+.+.|++++|++....- .-.| |...-..|..-++..|+++.|..-++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345666666666555443 2223 44444455566666677777766666666666653
No 275
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.22 E-value=2.3e+02 Score=29.37 Aligned_cols=20 Identities=5% Similarity=-0.139 Sum_probs=10.1
Q ss_pred HHHHHHhCCCHHHHHHHHhh
Q 038364 573 LMDMYVKNDCLQNAQEVFDN 592 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~~ 592 (1076)
.+...+..|+.+-+..+++.
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSE 151 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHhC
Confidence 33444455555555555544
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=44.87 E-value=1.5e+02 Score=30.72 Aligned_cols=144 Identities=11% Similarity=-0.015 Sum_probs=65.7
Q ss_pred hhHHHHHHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcc---hHHHHHHHHhc
Q 038364 230 VKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSR---ILTIILKLCTK 306 (1076)
Q Consensus 230 ~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~---t~~~ll~a~~~ 306 (1076)
..+.+..-++.|..+-+..+++.-..++...-.+.+..-+..|.. + +.+.+.+.|..++.. -.+.+.. .+.
T Consensus 31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~-~----~v~~Ll~~ga~~~~~d~~g~t~L~~-A~~ 104 (285)
T 3kea_A 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDT-K----IVKILLFSGLDDSQFDDKGNTALYY-AVD 104 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSC-H----HHHHHHHTTCCTTCCCTTSCCHHHH-HHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCH-H----HHHHHHHCCCCCCCcCCCCCcHHHH-HHH
Confidence 344455566677777777776653322222112233333455555 2 334444556554432 2223333 334
Q ss_pred cCChhhHHHHHHHHHHhCCCCChHH---HHHHHHHHhcCCChHHHHHHHhhcCCCCCh-hhHHHHHHHHHhCCChhHHHH
Q 038364 307 LMAFWLGVEVHASLIKRGFDFDVHL---KCALMNFYGKCRDVESANKLFSEVSDLEDD-LLWNEIIMVKLRNEKWENAIK 382 (1076)
Q Consensus 307 ~~~~~~a~~~~~~~~~~g~~~d~~~---~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~-~s~n~li~~~~~~g~~~eAl~ 382 (1076)
.|+.+ +...+++.|..++..- +.+.+..-++.|+.+-++.+++.-....+. .-++. +...++.|+.+-+.-
T Consensus 105 ~g~~~----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~-L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 105 SGNMQ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC-IHITIKNGHVDMMIL 179 (285)
T ss_dssp TTCHH----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHH-HHHHHHTTCHHHHHH
T ss_pred cCCHH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccH-HHHHHHcChHHHHHH
Confidence 44443 3344444554433221 134445555667776666666654431122 22333 333345555544443
Q ss_pred HH
Q 038364 383 LF 384 (1076)
Q Consensus 383 lf 384 (1076)
++
T Consensus 180 Ll 181 (285)
T 3kea_A 180 LL 181 (285)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 277
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=44.10 E-value=65 Score=31.02 Aligned_cols=53 Identities=11% Similarity=-0.027 Sum_probs=28.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC-----CCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 038364 744 LIDMYSKSGNLKSAREVFRKSA-----NKTL-------ASWNCMIMGFAIYGNGKEAILLFHELL 796 (1076)
Q Consensus 744 Li~~y~k~G~~~~A~~vf~~m~-----~~d~-------~s~n~li~~~~~~g~~~~Al~l~~~M~ 796 (1076)
=+..+...|.++.|+-+-+.+. ++++ .+...+..++...+++.+|...|++.+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3455566677777666554422 1222 133344566666666666666666654
No 278
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.86 E-value=36 Score=34.89 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=8.8
Q ss_pred ccCCcHHHHHHHHHHHHhCC
Q 038364 408 KVGAFHEGKQIHGYVLKSAL 427 (1076)
Q Consensus 408 ~~g~~~~a~~i~~~~~~~g~ 427 (1076)
+.|+.+..+.+++.+.+.|.
T Consensus 14 ~~g~~~~v~~ll~~l~~~~~ 33 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHKK 33 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHTC
T ss_pred HhCCHHHHHHHHHHHHhcCC
Confidence 33444444444444444443
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=40.80 E-value=5.1e+02 Score=30.50 Aligned_cols=265 Identities=11% Similarity=0.025 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038364 330 HLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACAKV 409 (1076)
Q Consensus 330 ~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 409 (1076)
.+.+.-+..+++.++.......|.. +. .+...-.....+....|+..+|.....++-..| .........++....+.
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p-~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 3445556677778888888887776 33 465555567778888999888988888877665 22333444555555444
Q ss_pred CCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 038364 410 GAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMN 489 (1076)
Q Consensus 410 g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~ 489 (1076)
|.+ .+..++.- +......|+...|..+...++.........++..+.. ...+......
T Consensus 150 g~l----------------t~~~~~~R-~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~-- 207 (618)
T 1qsa_A 150 GKQ----------------DPLAYLER-IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART-- 207 (618)
T ss_dssp TCS----------------CHHHHHHH-HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH--
T ss_pred CCC----------------CHHHHHHH-HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc--
Confidence 433 22222322 3455567788888888777743322223333333322 2222222211
Q ss_pred hCCCCCChhhHHH---HHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHH----hcCchHHHHHHHHHHHHcC
Q 038364 490 SSRIQPDIITWNC---LLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVT----ELRLLKYGRESHGYILRNG 562 (1076)
Q Consensus 490 ~~g~~pd~~ty~~---Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~----~~g~~~~a~~i~~~~~~~g 562 (1076)
+.|+...-.. -+.-+.+. +.+.|..+|....+... .+......+-...+ ..+...++...+.......
T Consensus 208 ---~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~ 282 (618)
T 1qsa_A 208 ---TGATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (618)
T ss_dssp ---SCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred ---cCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC
Confidence 1122221111 22223333 66788888877765432 23222222222222 2332334444444433332
Q ss_pred CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCC--Hh-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038364 563 LDYDLYVGTSLMDMYVKNDCLQNAQEVFDNMKNRN--IV-AWNSLISGYCFKGLFVNAKKMLNQMEE 626 (1076)
Q Consensus 563 ~~~d~~v~~aLi~~y~k~g~~~~A~~lf~~m~~~d--~~-~~n~lI~~~~~~g~~~~A~~lf~~M~~ 626 (1076)
. +..+..-.+....+.|+++.|...|+.|.... .. ..--+-.++.+.|+.++|..+|.++..
T Consensus 283 ~--~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 283 Q--STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp C--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C--ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 22223334444557799999999999998632 12 222344567788999999999998863
No 280
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=39.94 E-value=60 Score=33.14 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=53.0
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHH--hcCChhhHHHHHHHHHhcC---------CC-CCc
Q 038364 472 YTGLGYVDVAWSLFNKMNSSRIQPDII-------TWNCLLSGHF--THGSYQNVLTLLRGMQSLG---------FR-PNG 532 (1076)
Q Consensus 472 ~~~~g~~~~A~~lf~~M~~~g~~pd~~-------ty~~Li~~~~--~~g~~~~Al~l~~~m~~~g---------i~-pd~ 532 (1076)
.++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-...+ +. .|.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 345566666666666555555444432 2233333332 3455555544444432211 10 111
Q ss_pred ccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhH----------------HHHHHHHHHhCCCHHHHHHHHh
Q 038364 533 SSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYV----------------GTSLMDMYVKNDCLQNAQEVFD 591 (1076)
Q Consensus 533 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v----------------~~aLi~~y~k~g~~~~A~~lf~ 591 (1076)
.-.+.+ ...+..|+.+- .+.+++.|..++... ..+.+...+..|+.+-+..+++
T Consensus 92 ~g~t~L-~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 92 RGQTAL-HIAIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp ESBCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHH-HHHHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 222223 33334455543 344445565544332 3344555566677776666666
No 281
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=38.27 E-value=3.8e+02 Score=28.20 Aligned_cols=81 Identities=6% Similarity=-0.055 Sum_probs=35.0
Q ss_pred HHHHhCCCHHHHHHHHhhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccch--hhhhhhhhhcCC
Q 038364 575 DMYVKNDCLQNAQEVFDNMK----NRNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW--NSLVSGYSIWGQ 648 (1076)
Q Consensus 575 ~~y~k~g~~~~A~~lf~~m~----~~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~--~~Li~~y~k~g~ 648 (1076)
...++.|+.+-+..++++.. .+|....+.+...... +.......+.+.+.+.|..+|.... .+.+...+..|.
T Consensus 173 ~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence 33455666666666665422 1222222333322222 1112222334445566666554332 223344455666
Q ss_pred hhHHHHHH
Q 038364 649 SKEALVII 656 (1076)
Q Consensus 649 ~~~A~~lf 656 (1076)
.+....++
T Consensus 252 ~~~v~~Ll 259 (337)
T 4g8k_A 252 LGLVQRLL 259 (337)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 65554443
No 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=37.36 E-value=1.8e+02 Score=27.77 Aligned_cols=60 Identities=8% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHhCCCHHHHHHHHhhc-CC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCcc
Q 038364 575 DMYVKNDCLQNAQEVFDNM-KN---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLV 634 (1076)
Q Consensus 575 ~~y~k~g~~~~A~~lf~~m-~~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ 634 (1076)
...++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..++..
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK 174 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence 3444556666666555543 11 233333444443333222333455666666666666544
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=37.18 E-value=1.9e+02 Score=30.14 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=25.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 038364 779 FAIYGNGKEAILLFHELLETGFQPD-AITFTALLAACKNSGLVEEGWKYFDSMS 831 (1076)
Q Consensus 779 ~~~~g~~~~Al~l~~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~eA~~~~~~m~ 831 (1076)
..+.|..++|++....-++. .|. ...-..+..-+|-.|++++|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455555555555555542 332 2333334445555666666665555443
No 284
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=36.94 E-value=1.2e+02 Score=32.81 Aligned_cols=19 Identities=5% Similarity=-0.032 Sum_probs=10.3
Q ss_pred HHHHHhCCCHHHHHHHHhh
Q 038364 574 MDMYVKNDCLQNAQEVFDN 592 (1076)
Q Consensus 574 i~~y~k~g~~~~A~~lf~~ 592 (1076)
+...+..|+.+-+..+++.
T Consensus 177 L~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 177 LMRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc
Confidence 3344555666665555554
No 285
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=36.79 E-value=11 Score=26.67 Aligned_cols=13 Identities=31% Similarity=0.887 Sum_probs=10.0
Q ss_pred ccc-cCCcccCCCC
Q 038364 1062 HHF-REGECSCNDC 1074 (1076)
Q Consensus 1062 h~f-~~g~csc~d~ 1074 (1076)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 4899999977
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.33 E-value=1.1e+02 Score=30.55 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=10.1
Q ss_pred HhCCChhHHHHHHHHHHHCCCC
Q 038364 372 LRNEKWENAIKLFREMQFSSAK 393 (1076)
Q Consensus 372 ~~~g~~~eAl~lf~~M~~~g~~ 393 (1076)
++.|+.+-...+++.+.+.|..
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCC
Confidence 4445555444444444444433
No 287
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.91 E-value=2.1e+02 Score=31.72 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=9.5
Q ss_pred HHHhCCChHHHHHHHHhc
Q 038364 440 MYSRNNKLELATRVFDSM 457 (1076)
Q Consensus 440 ~y~k~g~~~~A~~lf~~m 457 (1076)
..++.|+.+.+..+++.-
T Consensus 119 ~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 119 IAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHHHHTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhCC
Confidence 334456666555555543
No 288
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.09 E-value=1.1e+02 Score=34.39 Aligned_cols=93 Identities=5% Similarity=-0.064 Sum_probs=58.3
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcCC--CCCch----h
Q 038364 840 IEHYSCMVDLLGKAGYLDEAWDFIRTMP-----FKPDATIWGALLGSCRIHGHLEYAEIASRRLFKLE--PCNSA----N 908 (1076)
Q Consensus 840 ~~~y~~li~~l~r~G~l~eA~~l~~~m~-----~~pd~~~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~--P~~~~----~ 908 (1076)
......+.+.|.+.|++++|.+.+.++. ...-...|-..+..|...+|+..+....+++..+. ..++. .
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3456677777888888888888777762 22223466677777777888888887777765431 11221 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 038364 909 YNLMMNLLAMSNRWEDVERLRHSM 932 (1076)
Q Consensus 909 y~~L~~~y~~~G~~~eA~~~~~~m 932 (1076)
..+-+-++...++|.+|.+.|-..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHH
Confidence 223344455667788887777664
No 289
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.94 E-value=3.3e+02 Score=26.02 Aligned_cols=186 Identities=10% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 038364 417 QIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPD 496 (1076)
Q Consensus 417 ~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd 496 (1076)
..+..+++.=-.+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+..-.+...+... |
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~----~ 89 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDE----D 89 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----S
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCC----C
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 038364 497 IITWNCLLSGHFTHGSYQNVLTLLRGMQSLGFRPNGSSVSVVLQAVTELRLLKYGRESHGYILRNGLDYDLYVGTSLMDM 576 (1076)
Q Consensus 497 ~~ty~~Li~~~~~~g~~~~Al~l~~~m~~~gi~pd~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~~aLi~~ 576 (1076)
...-...+.++.+.+..+....+.+.+.. +|...-...+.++...++.+....+...+. .++..+-...+.+
T Consensus 90 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~A~~a 161 (201)
T 3ltj_A 90 GWVRQSAAVALGQIGDERAVEPLIKALKD----EDWFVRIAAAFALGEIGDERAVEPLIKALK----DEDGWVRQSAADA 161 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHTCGGGHHHHHHHTT----CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCCHHHHHHHHHH
Q ss_pred HHhCCCHHHHHHHHhhcCCCCHhHHHHHHHHHHhcCCh
Q 038364 577 YVKNDCLQNAQEVFDNMKNRNIVAWNSLISGYCFKGLF 614 (1076)
Q Consensus 577 y~k~g~~~~A~~lf~~m~~~d~~~~n~lI~~~~~~g~~ 614 (1076)
+.+.|..+....+.+.+..++...-...+.++.+....
T Consensus 162 L~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 162 LGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--
T ss_pred HHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhh
No 290
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=32.90 E-value=2.8e+02 Score=26.59 Aligned_cols=90 Identities=4% Similarity=-0.065 Sum_probs=43.4
Q ss_pred HhCCCHHHHHHHHhhcCC-CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccc---hhhhhhhhhhc-CChhH
Q 038364 578 VKNDCLQNAQEVFDNMKN-RN-IVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVS---WNSLVSGYSIW-GQSKE 651 (1076)
Q Consensus 578 ~k~g~~~~A~~lf~~m~~-~d-~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t---~~~Li~~y~k~-g~~~~ 651 (1076)
++.|+++....++..-.. .+ ..-+ +.+...+..|..+.-.++.+.+.+.|..+|... ++.|..++... .+...
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 445666665555544322 11 1112 233344455666555666777777777666543 23333332221 22333
Q ss_pred HHHHHHHhHhcCCCCch
Q 038364 652 ALVIIHHMKNSGIYPNV 668 (1076)
Q Consensus 652 A~~lf~~m~~~gi~pd~ 668 (1076)
..++.+.+.+.|..++.
T Consensus 93 ~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 93 TTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 44555556666655543
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.76 E-value=3.3e+02 Score=25.85 Aligned_cols=76 Identities=7% Similarity=0.030 Sum_probs=34.5
Q ss_pred HHhCCCHHHHHHHHhhcC-C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCccch--hhhhhhhhhcCChh
Q 038364 577 YVKNDCLQNAQEVFDNMK-N---RNIVAWNSLISGYCFKGLFVNAKKMLNQMEEEEIKPDLVSW--NSLVSGYSIWGQSK 650 (1076)
Q Consensus 577 y~k~g~~~~A~~lf~~m~-~---~d~~~~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~t~--~~Li~~y~k~g~~~ 650 (1076)
.+..|+.+....+++.-. . +|..-++.+.. .++.|+. ++++.+.+.|..++.... .+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI-AVHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345566666666655433 1 22222333332 2344443 344444455655554332 22333444556666
Q ss_pred HHHHHHH
Q 038364 651 EALVIIH 657 (1076)
Q Consensus 651 ~A~~lf~ 657 (1076)
-+..+++
T Consensus 87 ~~~~Ll~ 93 (201)
T 3hra_A 87 ILAYMLK 93 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555553
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.33 E-value=94 Score=33.26 Aligned_cols=66 Identities=11% Similarity=0.217 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--hhhHHHHHHHHHhcCCCC
Q 038364 464 SWNSMISSYTGLGYVDVAWSLFNKMNSSRIQPDIITWNCLLSGHFTHGS--YQNVLTLLRGMQSLGFRP 530 (1076)
Q Consensus 464 s~n~lI~~~~~~g~~~~A~~lf~~M~~~g~~pd~~ty~~Li~~~~~~g~--~~~Al~l~~~m~~~gi~p 530 (1076)
-.+.++.-|...|+.++|.+.++++..-... ....+..+..++-+.++ .+.+.+++..+.+.|+-+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 4567888999999999999999998532111 22333444444444332 455778888888766543
No 293
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.19 E-value=3.5e+02 Score=26.08 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCC
Q 038364 429 SNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLG 476 (1076)
Q Consensus 429 ~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g 476 (1076)
+|..+-...+....+.|+.+....+.+.+..+|...-...+.++.+.|
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 344444444444444444333333333333344333333333343333
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.72 E-value=1.2e+02 Score=29.98 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=9.8
Q ss_pred HHHHHhCCCHHHHHHHHhhc
Q 038364 574 MDMYVKNDCLQNAQEVFDNM 593 (1076)
Q Consensus 574 i~~y~k~g~~~~A~~lf~~m 593 (1076)
++...+.|+.+-+..+.+..
T Consensus 214 l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHhh
Confidence 34445555555555554443
No 295
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=30.62 E-value=7.2e+02 Score=29.20 Aligned_cols=96 Identities=6% Similarity=-0.091 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCCCCchhhhHHHHHHHccCChhhHHHHhhhcCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCC
Q 038364 212 SKHAQMIKMGKIWNSDDMVKSLIFHYLEFGDFTSAAKAFFLYFSRSYADWSSFLEDYESFGGEVQELLEVWGELHGKGVI 291 (1076)
Q Consensus 212 ~~h~~~~~~g~~~~~~~~~~~ll~~y~~~g~~~~A~~~f~~~~~~~~~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~ 291 (1076)
++-+.+-+..-.+....+.+.-+..+++.+++..-...|.. +..+...-=....+....|+. .+|....+.+=..|-.
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~-~~a~~~~~~lW~~~~~ 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQS-EEAWQGAKELWLTGKS 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCH-HHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHhCCCC
Confidence 55555554311101123445556677778888888887766 433333222355566777887 7787777776655532
Q ss_pred CCcchHHHHHHHHhccCCh
Q 038364 292 FRSRILTIILKLCTKLMAF 310 (1076)
Q Consensus 292 p~~~t~~~ll~a~~~~~~~ 310 (1076)
....+..++....+.|.+
T Consensus 135 -~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 135 -QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp -CCTHHHHHHHHHHHTTCS
T ss_pred -CcHHHHHHHHHHHHCCCC
Confidence 344566666666654443
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=30.24 E-value=2.6e+02 Score=27.47 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=8.1
Q ss_pred hcCCChhHHHHHHHHHh
Q 038364 679 LQNENYRESLKFFIQMQ 695 (1076)
Q Consensus 679 ~~~g~~~eAl~l~~~m~ 695 (1076)
...|+.+.++++.+.++
T Consensus 218 ~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 218 SLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444445555554444
No 297
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=29.81 E-value=20 Score=33.11 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=31.4
Q ss_pred CCcEEEE----eccccCchhHHHHHHHHhhcCceEEEecCCccccccCCccc
Q 038364 1023 RAPIRVI----KNTRVCSDCHTAAKYMSLVRGREIFLRDGARFHHFREGECS 1070 (1076)
Q Consensus 1023 ~~~i~v~----knlr~c~dch~~~k~~s~~~~r~i~vrd~~rfh~f~~g~cs 1070 (1076)
.-.+||+ ++.++|.+| .|+..-..-++.-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4567777 578999998 566655666899999999999874
No 298
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.12 E-value=4e+02 Score=25.87 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=9.3
Q ss_pred HHHHhCCChHHHHHHHHh
Q 038364 439 SMYSRNNKLELATRVFDS 456 (1076)
Q Consensus 439 ~~y~k~g~~~~A~~lf~~ 456 (1076)
...++.|+++....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334445555555555544
No 299
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.55 E-value=1.6e+02 Score=29.63 Aligned_cols=54 Identities=15% Similarity=0.113 Sum_probs=26.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhc---CChhhHHHHHHHHH
Q 038364 470 SSYTGLGYVDVAWSLFNKMNSSRIQPDI-------ITWNCLLSGHFTH---GSYQNVLTLLRGMQ 524 (1076)
Q Consensus 470 ~~~~~~g~~~~A~~lf~~M~~~g~~pd~-------~ty~~Li~~~~~~---g~~~~Al~l~~~m~ 524 (1076)
...++.|+.+....+++.+.+.|..++. .-++.|..+ +.. |+.+-+..+++.-.
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCC
Confidence 3345566666666666666555544432 223333333 333 55555555554433
No 300
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.97 E-value=1.1e+02 Score=30.56 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=20.7
Q ss_pred HHHHcCCCCCccch--hhhhhhhhhcCChhHHHHHHHHhHh
Q 038364 623 QMEEEEIKPDLVSW--NSLVSGYSIWGQSKEALVIIHHMKN 661 (1076)
Q Consensus 623 ~M~~~g~~pd~~t~--~~Li~~y~k~g~~~~A~~lf~~m~~ 661 (1076)
.+.+.|..++...- .+-+......|+.+.+.++.+.+.+
T Consensus 195 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 195 LFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444544443321 2344455566777777777766654
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.97 E-value=3.7e+02 Score=26.11 Aligned_cols=19 Identities=16% Similarity=-0.006 Sum_probs=8.9
Q ss_pred HHHHHhCCChHHHHHHHHH
Q 038364 469 ISSYTGLGYVDVAWSLFNK 487 (1076)
Q Consensus 469 I~~~~~~g~~~~A~~lf~~ 487 (1076)
+...++.|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3334445555555544443
No 302
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=26.68 E-value=5.7e+02 Score=26.70 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=6.9
Q ss_pred HHHHHHHCCCCCCH
Q 038364 791 LFHELLETGFQPDA 804 (1076)
Q Consensus 791 l~~~M~~~g~~Pd~ 804 (1076)
+.+-+++.|-.||.
T Consensus 316 iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHHHTTCCC--
T ss_pred HHHHHHHCcCCCCC
Confidence 34445566666664
No 303
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.39 E-value=2.5e+02 Score=31.40 Aligned_cols=61 Identities=8% Similarity=0.036 Sum_probs=40.3
Q ss_pred chhhhhhhhhhcCChhHHHHHHHHhHhc--CCCCchHHHHHHHHHHhcCCChhHHHHHHHHHh
Q 038364 635 SWNSLVSGYSIWGQSKEALVIIHHMKNS--GIYPNVVTWTSLISGSLQNENYRESLKFFIQMQ 695 (1076)
Q Consensus 635 t~~~Li~~y~k~g~~~~A~~lf~~m~~~--gi~pd~~ty~~LI~~~~~~g~~~eAl~l~~~m~ 695 (1076)
+...+...|.+.|++++|.+.|.++.+. +..--...|-.+|..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556777777888888888888777753 223334556666666677777777776666653
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.71 E-value=2.2e+02 Score=25.96 Aligned_cols=63 Identities=21% Similarity=0.297 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhcCCCC---ChhhHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCC
Q 038364 332 KCALMNFYGKCRDVESANKLFSEVSDLE---DDLLWNEIIMVKLRNEK--WENAIKLFREMQFSSAKAI 395 (1076)
Q Consensus 332 ~~~Li~~y~k~g~~~~A~~vf~~m~~~~---d~~s~n~li~~~~~~g~--~~eAl~lf~~M~~~g~~p~ 395 (1076)
.+.++.=|...|+.++|.+.++++.. + ..+...++..++=+.+. .+....++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45677888888999999999998865 4 23444555555555432 3567778888877765443
No 305
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=25.39 E-value=3.5e+02 Score=26.82 Aligned_cols=94 Identities=14% Similarity=0.222 Sum_probs=64.6
Q ss_pred CCCCHH---HHHHHHHHHHHcCCchHHHHHHHHHhc--CCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCCCccCcc
Q 038364 868 FKPDAT---IWGALLGSCRIHGHLEYAEIASRRLFK--LEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVGVKSVLV 942 (1076)
Q Consensus 868 ~~pd~~---~~~~Ll~a~~~~g~~e~A~~~~~~l~~--l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g~~~~~~ 942 (1076)
.+-|.. +|-.++..| ..++...+..+|+.+.. +.-..+..|...+..|...|++.+|.++++.=.+++..+
T Consensus 73 YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P--- 148 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP--- 148 (202)
T ss_dssp GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS---
T ss_pred ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---
Confidence 344544 565555554 23446688888888874 556667789999999999999999999999877766432
Q ss_pred eEEEEECCEEEEEEeCCCCCcCcHHHHHHHHHHHHHHHHCCcccC
Q 038364 943 WSWIQIDQIVHVFSAEGAPHPATGEIYFELYHLVSEMKKLGYVPD 987 (1076)
Q Consensus 943 ~swi~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~m~~~G~~pd 987 (1076)
.+.+-........+|.+.+++-+
T Consensus 149 ----------------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 149 ----------------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ----------------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 12334445566677877777433
No 306
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.07 E-value=5e+02 Score=24.77 Aligned_cols=16 Identities=0% Similarity=-0.025 Sum_probs=7.8
Q ss_pred HHHHHHHH-cCCCCCcc
Q 038364 619 KMLNQMEE-EEIKPDLV 634 (1076)
Q Consensus 619 ~lf~~M~~-~g~~pd~~ 634 (1076)
++++.+.+ .|..++..
T Consensus 134 ~iv~~Ll~~~gad~~~~ 150 (186)
T 3t8k_A 134 PLYKLIFSQSGLQLLIK 150 (186)
T ss_dssp HHHHHHHTSTTCCTTCC
T ss_pred HHHHHHHHhcCCCCccc
Confidence 44444555 55555443
No 307
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.16 E-value=2.8e+02 Score=25.21 Aligned_cols=58 Identities=10% Similarity=0.226 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCCh---hHHHHHHHHHHhCCC--hHHHHHHHHHHHhCC
Q 038364 435 NCLISMYSRNNKLELATRVFDSMKDHNL---SSWNSMISSYTGLGY--VDVAWSLFNKMNSSR 492 (1076)
Q Consensus 435 n~Li~~y~k~g~~~~A~~lf~~m~~~d~---~s~n~lI~~~~~~g~--~~~A~~lf~~M~~~g 492 (1076)
+.++.=|...|+.++|.+.++++..|.- +...++..++-+.+. .+....++..+...|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 4455555555666666666655544321 233333334433321 233445555554443
No 308
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=22.06 E-value=2.2e+02 Score=28.93 Aligned_cols=19 Identities=5% Similarity=0.048 Sum_probs=10.8
Q ss_pred HHHHHHhCCCHHHHHHHHh
Q 038364 573 LMDMYVKNDCLQNAQEVFD 591 (1076)
Q Consensus 573 Li~~y~k~g~~~~A~~lf~ 591 (1076)
.+...++.|+.+-+..+++
T Consensus 151 pL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 151 PLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 3444555666666666655
No 309
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.87 E-value=5.3e+02 Score=24.70 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHhhcCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038364 328 DVHLKCALMNFYGKCRDVESANKLFSEVSDLEDDLLWNEIIMVKLRNEKWENAIKLFREMQFSSAKAISRTIVKMLQACA 407 (1076)
Q Consensus 328 d~~~~~~Li~~y~k~g~~~~A~~vf~~m~~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~p~~~t~~~ll~a~~ 407 (1076)
|..+....+..+++.|..+....+.+.+.. +|...-...+.++.+.|.. +++..+.++.. .+|...-...+.+..
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKD-EDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcC-CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 333333334444444443333333333334 4444444444555554442 33333334332 245555555556666
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChHHHHHHHHH
Q 038364 408 KVGAFHEGKQIHGYVLKSALESNLSVCNCLISMYSRNNKLELATRVFDSMKDHNLSSWNSMISSYTGLGYVDVAWSLFNK 487 (1076)
Q Consensus 408 ~~g~~~~a~~i~~~~~~~g~~~d~~v~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~lI~~~~~~g~~~~A~~lf~~ 487 (1076)
..++.+....+.. ++ -.++..+-...+..+.+.|+.+....+.+.+..+|...-...+.++.+.+. .++...+.+
T Consensus 107 ~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~ 181 (211)
T 3ltm_A 107 QIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 181 (211)
T ss_dssp HHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 6665432222222 21 245666666667777666665544444455555565555555555655554 344444444
Q ss_pred HHh
Q 038364 488 MNS 490 (1076)
Q Consensus 488 M~~ 490 (1076)
+.+
T Consensus 182 ~l~ 184 (211)
T 3ltm_A 182 LAE 184 (211)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 310
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=21.51 E-value=19 Score=22.11 Aligned_cols=13 Identities=38% Similarity=1.321 Sum_probs=10.2
Q ss_pred cccCCcc--cCCCCC
Q 038364 1063 HFREGEC--SCNDCW 1075 (1076)
Q Consensus 1063 ~f~~g~c--sc~d~w 1075 (1076)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5888888 688777
No 311
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.35 E-value=1.3e+02 Score=32.24 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=43.8
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHHcCCchHHHHHHHHHhcCCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 038364 863 IRTMPFKPDAT--IWGALLGSCRIHGHLEYAEIASRRLFKLEPCNSANYNLMMNLLAMSNRWEDVERLRHSMDEVG 936 (1076)
Q Consensus 863 ~~~m~~~pd~~--~~~~Ll~a~~~~g~~e~A~~~~~~l~~l~P~~~~~y~~L~~~y~~~G~~~eA~~~~~~m~~~g 936 (1076)
|...++.|... ++.+-++.+.+++|+..|..++++++++.|.. ...++|.+++..-...+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP--------------EVAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH--------------HHHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCC
Confidence 33445556443 67778888999999999999999999998852 13456777777765543
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.36 E-value=7.8e+02 Score=26.00 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcCCCCh---HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 038364 742 TGLIDMYSKSGNLKSAREVFRKSANKTL---ASWNCMIMGFAIYGN--GKEAILLFHELLETGFQPDAI 805 (1076)
Q Consensus 742 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~---~s~n~li~~~~~~g~--~~~Al~l~~~M~~~g~~Pd~~ 805 (1076)
..++.=|...|+.++|.+.++++..|.- +...++..++-+.++ .+....++..+.+.|+-+...
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4678888889999999999999986632 344556666665533 344668888888766655443
No 313
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.12 E-value=2.6e+02 Score=30.19 Aligned_cols=94 Identities=18% Similarity=0.090 Sum_probs=55.9
Q ss_pred hhHHHHHHHccCChhhHHHHhhhcCCCCc---ccHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCCCcc---hHHHHHHH
Q 038364 230 VKSLIFHYLEFGDFTSAAKAFFLYFSRSY---ADWSSFLEDYESFGGEVQELLEVWGELHGKGVIFRSR---ILTIILKL 303 (1076)
Q Consensus 230 ~~~ll~~y~~~g~~~~A~~~f~~~~~~~~---~~wn~li~~~~~~g~~~~~al~lf~~m~~~g~~p~~~---t~~~ll~a 303 (1076)
.+.++.-|...|+.++|.+.++++..|.. +....+..++-+....-+.+..++..+...|+-+... .|..++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 45688999999999999999999987642 2222333333333222134557788888776543322 24444444
Q ss_pred HhccC-ChhhHHHHHHHHHHh
Q 038364 304 CTKLM-AFWLGVEVHASLIKR 323 (1076)
Q Consensus 304 ~~~~~-~~~~a~~~~~~~~~~ 323 (1076)
+-... ++..+....+.++..
T Consensus 94 l~Dl~lDiP~a~~~La~~v~~ 114 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVTP 114 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHGG
T ss_pred ChHhhcCccchHHHHHHHHHH
Confidence 44332 566666666665544
Done!