Query 038365
Match_columns 148
No_of_seqs 190 out of 968
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:16:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4754 Predicted phosphoglyce 99.9 6E-26 1.3E-30 177.6 7.6 117 6-122 10-193 (248)
2 PRK14116 gpmA phosphoglyceromu 99.9 7.1E-24 1.5E-28 167.9 5.8 109 10-125 1-190 (228)
3 PRK13463 phosphatase PhoE; Pro 99.9 1.8E-23 4E-28 162.5 5.9 108 10-124 2-158 (203)
4 PRK14119 gpmA phosphoglyceromu 99.9 1.7E-23 3.7E-28 165.5 5.6 108 10-124 1-189 (228)
5 PRK14117 gpmA phosphoglyceromu 99.9 4E-23 8.8E-28 163.9 6.1 109 10-125 1-190 (230)
6 PRK13462 acid phosphatase; Pro 99.9 4.2E-23 9.1E-28 161.1 6.1 110 8-124 3-154 (203)
7 PRK03482 phosphoglycerate muta 99.9 1.8E-22 4E-27 157.6 7.0 107 10-123 1-156 (215)
8 PRK01112 phosphoglyceromutase; 99.9 1.5E-22 3.2E-27 160.8 6.1 109 10-125 1-189 (228)
9 COG0406 phoE Broad specificity 99.9 3E-22 6.4E-27 155.1 6.3 107 9-122 1-158 (208)
10 PRK14118 gpmA phosphoglyceromu 99.9 4.4E-22 9.6E-27 157.6 5.4 108 11-125 1-189 (227)
11 PRK15004 alpha-ribazole phosph 99.9 5E-22 1.1E-26 153.6 5.2 107 11-124 1-156 (199)
12 PRK01295 phosphoglyceromutase; 99.8 2E-21 4.3E-26 151.8 6.4 108 10-124 2-165 (206)
13 TIGR03848 MSMEG_4193 probable 99.8 3.6E-21 7.7E-26 149.2 6.2 107 12-125 1-160 (204)
14 PRK14120 gpmA phosphoglyceromu 99.8 3.1E-21 6.6E-26 155.2 4.8 110 9-125 3-191 (249)
15 PRK14115 gpmA phosphoglyceromu 99.8 8.7E-21 1.9E-25 152.3 6.1 107 11-124 1-188 (247)
16 TIGR01258 pgm_1 phosphoglycera 99.8 1E-20 2.2E-25 151.7 6.2 107 11-124 1-188 (245)
17 TIGR03162 ribazole_cobC alpha- 99.8 2.1E-20 4.6E-25 141.0 5.1 104 13-124 1-152 (177)
18 PRK07238 bifunctional RNase H/ 99.8 3.9E-20 8.4E-25 155.4 7.1 109 8-123 169-326 (372)
19 smart00855 PGAM Phosphoglycera 99.8 3.3E-19 7.2E-24 132.0 6.6 105 12-123 1-154 (155)
20 PF00300 His_Phos_1: Histidine 99.8 6.2E-20 1.3E-24 134.2 1.9 105 12-123 1-157 (158)
21 PTZ00322 6-phosphofructo-2-kin 99.7 1.8E-18 3.8E-23 155.3 7.4 106 11-125 420-593 (664)
22 KOG0235 Phosphoglycerate mutas 99.7 8.4E-18 1.8E-22 132.6 4.7 110 8-124 3-171 (214)
23 cd07067 HP_PGM_like Histidine 99.4 6.4E-14 1.4E-18 102.8 3.2 92 12-123 1-113 (153)
24 PTZ00122 phosphoglycerate muta 99.4 6.9E-13 1.5E-17 109.4 6.1 103 9-125 101-248 (299)
25 COG0588 GpmA Phosphoglycerate 99.4 2E-13 4.2E-18 107.5 1.8 35 10-51 1-35 (230)
26 PTZ00123 phosphoglycerate muta 99.4 2E-13 4.4E-18 108.7 1.5 95 23-124 1-176 (236)
27 cd07040 HP Histidine phosphata 99.3 1.6E-12 3.5E-17 94.5 2.8 88 12-122 1-112 (153)
28 PRK06193 hypothetical protein; 99.2 1.7E-11 3.7E-16 96.4 6.7 108 11-127 43-173 (206)
29 TIGR00249 sixA phosphohistidin 99.0 7.8E-10 1.7E-14 82.7 5.2 94 11-122 1-113 (152)
30 PRK10848 phosphohistidine phos 98.8 3.5E-09 7.7E-14 79.8 4.6 47 11-68 1-63 (159)
31 KOG0234 Fructose-6-phosphate 2 98.8 5.6E-09 1.2E-13 89.7 6.2 102 11-123 240-389 (438)
32 PRK15416 lipopolysaccharide co 98.6 5.1E-08 1.1E-12 76.5 3.6 91 9-122 53-164 (201)
33 COG2062 SixA Phosphohistidine 98.1 1.6E-06 3.5E-11 66.1 2.8 50 10-68 1-66 (163)
34 KOG3734 Predicted phosphoglyce 97.9 6.4E-05 1.4E-09 61.5 8.5 35 88-122 169-207 (272)
35 KOG4609 Predicted phosphoglyce 97.9 2.3E-05 4.9E-10 62.5 5.2 97 10-122 94-230 (284)
36 cd07061 HP_HAP_like Histidine 64.0 5.3 0.00011 31.1 2.1 23 11-51 4-26 (242)
37 PRK10173 glucose-1-phosphatase 52.2 64 0.0014 28.0 6.9 38 11-51 33-78 (413)
38 PF00328 His_Phos_2: Histidine 50.9 5.4 0.00012 31.9 0.1 10 42-51 61-70 (347)
39 COG3848 Phosphohistidine swive 25.5 33 0.00072 24.5 0.8 28 109-136 57-84 (111)
40 PRK00865 glutamate racemase; P 24.4 1.5E+02 0.0031 23.8 4.5 66 62-130 21-95 (261)
41 PF09370 TIM-br_sig_trns: TIM- 23.3 1.3E+02 0.0027 24.9 3.9 36 89-124 190-227 (268)
42 PF02500 DNA_pack_N: Probable 21.7 47 0.001 27.6 1.1 14 12-25 191-206 (284)
No 1
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=6e-26 Score=177.63 Aligned_cols=117 Identities=44% Similarity=0.744 Sum_probs=108.5
Q ss_pred CCccceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------------------------
Q 038365 6 QEFRMTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ---------------------------------- 51 (148)
Q Consensus 6 ~~~~mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q---------------------------------- 51 (148)
+....|+||||||||+.||+++..+|..||+.-|+||.||++|++|
T Consensus 10 t~~r~KtiyLvRHgQg~HNV~g~~~h~ay~s~~~fD~~LTplG~~Qv~~l~~~~~A~qL~~~ieliv~SPMrRtLqT~v~ 89 (248)
T KOG4754|consen 10 TKNRCKTIYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIVVSPMRRTLQTMVI 89 (248)
T ss_pred ccCcceEEEEEeccccccccCcccchhhhhhhhccccccCHHHHHHHHHHhhhhhhhhcCCceeEEEechHHHHHHHHHH
Confidence 4556899999999999999999999999999999999999999999
Q ss_pred ------------------------------ccccCCCCCCHHHHHHhCCCCCcCCcccCCCccccCCCCCCHHHHHHHHH
Q 038365 52 ------------------------------GVHPCDKRRSISDYQFLFPAVDFSLIESDEDVLWKANVRETNEEVAARGL 101 (148)
Q Consensus 52 ------------------------------~~~~~d~~r~~~~i~~~fp~~~f~~~~~~~d~~w~~~~gEs~~~v~~Rv~ 101 (148)
|.++||+|+....+.+.||.+||+....+.++.|++.-+|+.++.+.|-+
T Consensus 90 ~f~~~~~e~g~~~~p~~vsp~~i~~~rE~lG~hpCD~r~~v~~~~~lfp~~DFs~~~~dv~~~~~pdy~ed~e~~a~r~r 169 (248)
T KOG4754|consen 90 AFGGYLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSSVTDLMKLFPAYDFSLCETDVDPLKKPDYREDDEESAARSR 169 (248)
T ss_pred HhcceeccCCCcCCceeecchHHHHHHHHhCCCcccccchhHHHHhhcccccceeeccCcchhccCcchhhHHHHHHhHH
Confidence 56899999999999999999999988777889999999999999999999
Q ss_pred HHHHHHHcCCC---Ceeecccccc
Q 038365 102 KFMNCMTGSDS---SSTNYPGKIP 122 (148)
Q Consensus 102 ~fl~~i~~~~~---~vVsHgg~I~ 122 (148)
+|+++|....+ .||+|+|.|+
T Consensus 170 e~~~~l~~r~ek~iavvths~fl~ 193 (248)
T KOG4754|consen 170 EFLEWLAKRPEKEIAVVTHSGFLR 193 (248)
T ss_pred HHHHHHHhCccceEEEEEehHHHH
Confidence 99999998765 5799999996
No 2
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=99.89 E-value=7.1e-24 Score=167.94 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=82.8
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh-----
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL----- 68 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~----- 68 (148)
|++|||||||||.||..++. ||+.|+|||+.|++| .+++||+.|++++++..
T Consensus 1 m~~l~LVRHGeT~~N~~~~~-------~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~qTA~~i~~~~~ 73 (228)
T PRK14116 1 MAKLVLIRHGQSEWNLSNQF-------TGWVDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIKTLHYALEESD 73 (228)
T ss_pred CCEEEEEeCCCCCCccccCc-------CCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcC
Confidence 68899999999999999985 899999999999999 36889999998775521
Q ss_pred -----------CCCCCcCCccc--------CC-C----------------------------c------cccCCCCCCHH
Q 038365 69 -----------FPAVDFSLIES--------DE-D----------------------------V------LWKANVRETNE 94 (148)
Q Consensus 69 -----------fp~~~f~~~~~--------~~-d----------------------------~------~w~~~~gEs~~ 94 (148)
+-|++|+.+.. .. + . .+.+|+|||+.
T Consensus 74 ~~~~~~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pgGEs~~ 153 (228)
T PRK14116 74 QLWIPETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDPRIIPGGENLK 153 (228)
T ss_pred cCCCCcccCcccccccchhhcCCCHHHHHHHhhhhHHHHHhhcccccCcccccccccccccchhhhccCccCCCCCCCHH
Confidence 22456654321 00 0 0 12458999999
Q ss_pred HHHHHHHHHHHHHHcC---C-C--CeeecccccccCC
Q 038365 95 EVAARGLKFMNCMTGS---D-S--SSTNYPGKIPSAL 125 (148)
Q Consensus 95 ~v~~Rv~~fl~~i~~~---~-~--~vVsHgg~I~~~~ 125 (148)
++.+|+..++++++.. . . .||||||+|++++
T Consensus 154 ~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~ll 190 (228)
T PRK14116 154 VTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRALT 190 (228)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHHHH
Confidence 9999999999997631 1 2 4699999998544
No 3
>PRK13463 phosphatase PhoE; Provisional
Probab=99.88 E-value=1.8e-23 Score=162.52 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=83.6
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc--------------ccccCCCCCCHHHHHHh-------
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ--------------GVHPCDKRRSISDYQFL------- 68 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q--------------~~~~~d~~r~~~~i~~~------- 68 (148)
|++|||||||||.||+.++. +|+.|+|||++|++| .+++|+..|++++++..
T Consensus 2 ~~~i~lvRHG~t~~n~~~~~-------~G~~d~~Lt~~G~~Qa~~~~~~l~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~ 74 (203)
T PRK13463 2 KTTVYVTRHGETEWNVAKRM-------QGRKNSALTENGILQAKQLGERMKDLSIHAIYSSPSERTLHTAELIKGERDIP 74 (203)
T ss_pred ceEEEEEeCCCCccchhCcc-------cCCCCCCcCHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHhcCCCC
Confidence 47899999999999999875 799999999999999 47899999998876521
Q ss_pred ------CCCCCcCCccc--------C----------CCccccCCCCCCHHHHHHHHHHHHHHHHcCC--C--Ceeecccc
Q 038365 69 ------FPAVDFSLIES--------D----------EDVLWKANVRETNEEVAARGLKFMNCMTGSD--S--SSTNYPGK 120 (148)
Q Consensus 69 ------fp~~~f~~~~~--------~----------~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~--~--~vVsHgg~ 120 (148)
+-|++|+.+.. . .+..+.+|+|||+.++.+|+..++++|.+++ . .|||||++
T Consensus 75 ~~~~~~l~E~~~G~~eG~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg~~ 154 (203)
T PRK13463 75 IIADEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLEKHKGESILIVSHAAA 154 (203)
T ss_pred ceECcCceeCCCCccCCCcHHHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeChHH
Confidence 23445543211 0 1112345799999999999999999998753 2 46999999
Q ss_pred cccC
Q 038365 121 IPSA 124 (148)
Q Consensus 121 I~~~ 124 (148)
|++.
T Consensus 155 ir~~ 158 (203)
T PRK13463 155 AKLL 158 (203)
T ss_pred HHHH
Confidence 9744
No 4
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=99.88 E-value=1.7e-23 Score=165.55 Aligned_cols=108 Identities=12% Similarity=0.170 Sum_probs=82.6
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh-----
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL----- 68 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~----- 68 (148)
|++|||||||||.||..+++ ||+.|+|||++|++| .+++||+.|++++++..
T Consensus 1 m~~l~LvRHGeT~~N~~~~~-------~G~~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~~TA~~i~~~~~ 73 (228)
T PRK14119 1 MPKLILCRHGQSEWNAKNLF-------TGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESK 73 (228)
T ss_pred CCEEEEEeCCCCCcccCCCc-------cCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEeCccHHHHHHHHHHHHhcc
Confidence 68899999999999999875 899999999999999 36889999998776532
Q ss_pred -----------CCCCCcCCccc--------CCC----ccc-------------------------------cCCCCCCHH
Q 038365 69 -----------FPAVDFSLIES--------DED----VLW-------------------------------KANVRETNE 94 (148)
Q Consensus 69 -----------fp~~~f~~~~~--------~~d----~~w-------------------------------~~~~gEs~~ 94 (148)
+-|++|+.+.. ..+ ..| .+|+|||+.
T Consensus 74 ~~~~~~~~~~~LrE~~fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~ 153 (228)
T PRK14119 74 QQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLK 153 (228)
T ss_pred cCCCCeeECCCccccccccccCCcHHHHHHHccHHHHHHHHcccccCCCcccccccccccccccccccccccCCCCCCHH
Confidence 22456654321 000 011 136899999
Q ss_pred HHHHHHHHHHHHHHcCC----C--CeeecccccccC
Q 038365 95 EVAARGLKFMNCMTGSD----S--SSTNYPGKIPSA 124 (148)
Q Consensus 95 ~v~~Rv~~fl~~i~~~~----~--~vVsHgg~I~~~ 124 (148)
++.+|+..++++++.++ . .||||||+|+++
T Consensus 154 ~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~l 189 (228)
T PRK14119 154 DTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRAL 189 (228)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHHH
Confidence 99999999999986542 2 469999999854
No 5
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=99.88 E-value=4e-23 Score=163.91 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=82.6
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHH------
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQF------ 67 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~------ 67 (148)
|++|||||||||.||..+++ ||+.|+|||++|++| .+++|++.|++++++.
T Consensus 1 m~~l~LvRHG~t~~n~~~~~-------qG~~D~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~sSpl~Ra~~TA~~i~~~~~ 73 (230)
T PRK14117 1 MVKLVFARHGESEWNKANLF-------TGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNLALEASD 73 (230)
T ss_pred CCEEEEEeCccccCcccCCc-------CCCCCCCcCHHHHHHHHHHHHHHHHcCCCCCEEEECCcHHHHHHHHHHHHhcc
Confidence 78999999999999999975 899999999999999 3578999999887552
Q ss_pred ----------hCCCCCcCCcccC---------CC---ccc-------------------------------cCCCCCCHH
Q 038365 68 ----------LFPAVDFSLIESD---------ED---VLW-------------------------------KANVRETNE 94 (148)
Q Consensus 68 ----------~fp~~~f~~~~~~---------~d---~~w-------------------------------~~~~gEs~~ 94 (148)
.+-|++|+.+... .+ ..| .+|+|||+.
T Consensus 74 ~~~~~~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~ 153 (230)
T PRK14117 74 QLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAHTDRRYASLDDSVIPDAENLK 153 (230)
T ss_pred cCCCCceeCCccccccchhhcCCCHHHHHHHccHHHHHHHhcccccCCCcccccccccccccccccccccCCCCCCCCHH
Confidence 1234566543210 00 011 347899999
Q ss_pred HHHHHHHHHHHHHHc-C--C-C--CeeecccccccCC
Q 038365 95 EVAARGLKFMNCMTG-S--D-S--SSTNYPGKIPSAL 125 (148)
Q Consensus 95 ~v~~Rv~~fl~~i~~-~--~-~--~vVsHgg~I~~~~ 125 (148)
++.+|+..|+++++. . . . .||||||+|++++
T Consensus 154 ~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll 190 (230)
T PRK14117 154 VTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALV 190 (230)
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEEEeChHHHHHHH
Confidence 999999999999762 2 1 2 4699999998543
No 6
>PRK13462 acid phosphatase; Provisional
Probab=99.88 E-value=4.2e-23 Score=161.07 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=85.5
Q ss_pred ccceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc-------------c---cccCCCCCCHHHHHHh---
Q 038365 8 FRMTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ-------------G---VHPCDKRRSISDYQFL--- 68 (148)
Q Consensus 8 ~~mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q-------------~---~~~~d~~r~~~~i~~~--- 68 (148)
..|++|||||||||.||..++. +|+.|+|||++|++| . +++|+..|++++++..
T Consensus 3 ~~~~~i~LvRHG~t~~n~~~~~-------~G~~d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sSpl~Ra~qTA~~i~~~ 75 (203)
T PRK13462 3 VRNHRLLLLRHGETEWSKSGRH-------TGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRRALDTAKLAGLT 75 (203)
T ss_pred ccccEEEEEeCCCCCcccCCCc-------cCCCCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEECchHHHHHHHHHhcCc
Confidence 5789999999999999999875 899999999999999 2 7889999998877642
Q ss_pred -------CCCCCcCCccc--------CCCc--cc--cCCCCCCHHHHHHHHHHHHHHHHcCC--C--CeeecccccccC
Q 038365 69 -------FPAVDFSLIES--------DEDV--LW--KANVRETNEEVAARGLKFMNCMTGSD--S--SSTNYPGKIPSA 124 (148)
Q Consensus 69 -------fp~~~f~~~~~--------~~d~--~w--~~~~gEs~~~v~~Rv~~fl~~i~~~~--~--~vVsHgg~I~~~ 124 (148)
+.|++|+.+.. ..+. .| ..|+|||+.++.+|+..+++.|..++ . .|||||++|+++
T Consensus 76 ~~~~~~~LrE~~~G~~eG~~~~ei~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg~vir~l 154 (203)
T PRK13462 76 VDEVSGLLAEWDYGSYEGLTTPQIRESEPDWLVWTHGCPGGESVAQVNERADRAVALALEHMESRDVVFVSHGHFSRAV 154 (203)
T ss_pred ccccCccccccCCccccCCcHHHHHHhCchHHhhcCCCCCCccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHH
Confidence 23456665421 0111 12 23789999999999999999998653 2 469999999853
No 7
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.87 E-value=1.8e-22 Score=157.58 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=83.5
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc--------------ccccCCCCCCHHHHHH--------
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ--------------GVHPCDKRRSISDYQF-------- 67 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q--------------~~~~~d~~r~~~~i~~-------- 67 (148)
|++|||||||||.+|..++. +|+.|+|||+.|++| .+++|+..|++++++.
T Consensus 1 m~~i~lvRHG~t~~n~~~~~-------~g~~d~~Lt~~G~~qA~~~~~~l~~~~~~~I~sSpl~Ra~qTA~~i~~~~~~~ 73 (215)
T PRK03482 1 MLQVYLVRHGETQWNAERRI-------QGQSDSPLTAKGEQQAMQVAERAKELGITHIISSDLGRTRRTAEIIAQACGCD 73 (215)
T ss_pred CcEEEEEeCCCccccccccc-------CCCCCCCcCHHHHHHHHHHHHHHhcCCCCEEEECCcHHHHHHHHHHHHhcCCC
Confidence 78999999999999998874 788999999999999 4789999999987763
Q ss_pred -----hCCCCCcCCcccC------------------CCccccCCCCCCHHHHHHHHHHHHHHHHcCCC----Ceeecccc
Q 038365 68 -----LFPAVDFSLIESD------------------EDVLWKANVRETNEEVAARGLKFMNCMTGSDS----SSTNYPGK 120 (148)
Q Consensus 68 -----~fp~~~f~~~~~~------------------~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~~----~vVsHgg~ 120 (148)
.+-|++|+.+... .+..+.+|+|||+.++..|+..++++|...+. .|||||++
T Consensus 74 ~~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~Rv~~~l~~~~~~~~~~~vliVsHg~~ 153 (215)
T PRK03482 74 IIFDPRLRELNMGVLEKRHIDSLTEEEEGWRRQLVNGTVDGRIPEGESMQELSDRMHAALESCLELPQGSRPLLVSHGIA 153 (215)
T ss_pred eeEChhccccCCccccCCcHHHHHhhHHHHHHhhhcCCCccCCCCCccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcHH
Confidence 1234556543210 01123357899999999999999999976432 46999999
Q ss_pred ccc
Q 038365 121 IPS 123 (148)
Q Consensus 121 I~~ 123 (148)
|++
T Consensus 154 i~~ 156 (215)
T PRK03482 154 LGC 156 (215)
T ss_pred HHH
Confidence 974
No 8
>PRK01112 phosphoglyceromutase; Provisional
Probab=99.87 E-value=1.5e-22 Score=160.77 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=82.4
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc--------------ccccCCCCCCHHHHHH--------
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ--------------GVHPCDKRRSISDYQF-------- 67 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q--------------~~~~~d~~r~~~~i~~-------- 67 (148)
|++|||||||||.||..++. +|+.|+|||+.|++| .+++|++.|++++++.
T Consensus 1 M~~L~LvRHGqt~~n~~~~~-------~G~~D~~Lte~G~~Qa~~l~~~L~~~~~d~iysSpl~Ra~qTA~~i~~~~~~~ 73 (228)
T PRK01112 1 MALLILLRHGQSVWNAKNLF-------TGWVDIPLSQQGIAEAIAAGEKIKDLPIDCIFTSTLVRSLMTALLAMTNHSSG 73 (228)
T ss_pred CcEEEEEeCCCCcccccccc-------CCCCCCCcCHHHHHHHHHHHHHhhcCCCCEEEEcCcHHHHHHHHHHHHhhccc
Confidence 78999999999999998875 799999999999999 4789999999887652
Q ss_pred ----------------------------------hCCCCCcCCcccC--------C----------CccccCCCCCCHHH
Q 038365 68 ----------------------------------LFPAVDFSLIESD--------E----------DVLWKANVRETNEE 95 (148)
Q Consensus 68 ----------------------------------~fp~~~f~~~~~~--------~----------d~~w~~~~gEs~~~ 95 (148)
.+.+++|+.+... . +..+.+|+|||+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d 153 (228)
T PRK01112 74 KIPYIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPPQGESLED 153 (228)
T ss_pred ccccccccccccccccccccccccccCCCeeecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHH
Confidence 1223455533210 0 11233689999999
Q ss_pred HHHHHHHHHHHHHcC----CC--CeeecccccccCC
Q 038365 96 VAARGLKFMNCMTGS----DS--SSTNYPGKIPSAL 125 (148)
Q Consensus 96 v~~Rv~~fl~~i~~~----~~--~vVsHgg~I~~~~ 125 (148)
+.+|+..++++++.+ .. .||||||+|++++
T Consensus 154 ~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~ 189 (228)
T PRK01112 154 TGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLI 189 (228)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHH
Confidence 999999999976432 22 4699999998544
No 9
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.86 E-value=3e-22 Score=155.05 Aligned_cols=107 Identities=22% Similarity=0.263 Sum_probs=82.4
Q ss_pred cceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh----
Q 038365 9 RMTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL---- 68 (148)
Q Consensus 9 ~mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~---- 68 (148)
.|++|||||||||.||..++. ||+.|+|||+.|++| .+++|+..|++++++..
T Consensus 1 ~~~~i~lvRHGqt~~n~~~~~-------~G~~d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sS~l~Ra~~TA~~~a~~~ 73 (208)
T COG0406 1 MMMRLYLVRHGETEWNVEGRL-------QGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLKRAQQTAEPLAEEL 73 (208)
T ss_pred CceEEEEEecCCccccccccc-------cCCCCCCCCHHHHHHHHHHHHHHhhcCCCCCEEEECchHHHHHHHHHHHHhc
Confidence 478999999999999999885 789999999999999 35689999998776631
Q ss_pred ---------CCCCCcCCccc--------C----------CCccccCCCCCCHHHHHHHHHHHHHHHHcCCC----Ceeec
Q 038365 69 ---------FPAVDFSLIES--------D----------EDVLWKANVRETNEEVAARGLKFMNCMTGSDS----SSTNY 117 (148)
Q Consensus 69 ---------fp~~~f~~~~~--------~----------~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~~----~vVsH 117 (148)
+-+++|+.+.. . .+..+..++|||+.++.+|+..++.++...+. .||||
T Consensus 74 ~~~~~~~~~l~E~~~G~~eg~~~~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsH 153 (208)
T COG0406 74 GLPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLRSPPGNNVLVVSH 153 (208)
T ss_pred CCCceecCCeeEeecccccCCcHHHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 12445554311 0 11122335699999999999999999998643 45999
Q ss_pred ccccc
Q 038365 118 PGKIP 122 (148)
Q Consensus 118 gg~I~ 122 (148)
|++|+
T Consensus 154 g~~ir 158 (208)
T COG0406 154 GGVIR 158 (208)
T ss_pred hHHHH
Confidence 99997
No 10
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=99.85 E-value=4.4e-22 Score=157.57 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=81.3
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh------
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL------ 68 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~------ 68 (148)
++|||||||||.||..+++ ||+.|+|||+.|++| .+++||+.|++++++..
T Consensus 1 m~l~LvRHG~t~~n~~~~~-------~G~~d~~Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSpl~Ra~~TA~~i~~~~~~ 73 (227)
T PRK14118 1 MELVFIRHGFSEWNAKNLF-------TGWRDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCNIVLEESNQ 73 (227)
T ss_pred CEEEEEecCCCccccccCc-------CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHhcCC
Confidence 3699999999999999985 899999999999999 36889999988766521
Q ss_pred ----------CCCCCcCCcccC---------CC---cc-------------------------------ccCCCCCCHHH
Q 038365 69 ----------FPAVDFSLIESD---------ED---VL-------------------------------WKANVRETNEE 95 (148)
Q Consensus 69 ----------fp~~~f~~~~~~---------~d---~~-------------------------------w~~~~gEs~~~ 95 (148)
+-|++|+.+... .+ .. ..+|+|||+.+
T Consensus 74 ~~~~~~~~~~LrE~~fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GEs~~~ 153 (227)
T PRK14118 74 LWIPQVKNWRLNERHYGALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLPADVVPDAENLKV 153 (227)
T ss_pred CCCCeecCCccccccCccccCCcHHHHHHHhhHHHHHHHHhccccCCCccccccccccccchhhccCcCCCCCCCCCHHH
Confidence 234566644210 00 00 12479999999
Q ss_pred HHHHHHHHHHHHHcC----CC--CeeecccccccCC
Q 038365 96 VAARGLKFMNCMTGS----DS--SSTNYPGKIPSAL 125 (148)
Q Consensus 96 v~~Rv~~fl~~i~~~----~~--~vVsHgg~I~~~~ 125 (148)
+.+|+..++++++.+ .. .||||||+|++++
T Consensus 154 ~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~ll 189 (227)
T PRK14118 154 TLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRALA 189 (227)
T ss_pred HHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHHHH
Confidence 999999999997752 12 4699999998544
No 11
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=99.85 E-value=5e-22 Score=153.63 Aligned_cols=107 Identities=18% Similarity=0.145 Sum_probs=82.1
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc--------------ccccCCCCCCHHHHHHh--------
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ--------------GVHPCDKRRSISDYQFL-------- 68 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q--------------~~~~~d~~r~~~~i~~~-------- 68 (148)
++|||||||||.+|..++. +|+.|+|||++|++| .+++|+..|++++++..
T Consensus 1 ~~i~lvRHG~t~~n~~~~~-------~G~~d~pLt~~G~~Qa~~~~~~l~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 73 (199)
T PRK15004 1 MRLWLVRHGETQANVDGLY-------SGHAPTPLTARGIEQAQNLHTLLRDVPFDLVLCSELERAQHTARLVLSDRQLPV 73 (199)
T ss_pred CeEEEEeCCCCccccCCcE-------eCCCCCCcCHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHhcCCCCc
Confidence 4699999999999999875 799999999999999 47899999998877632
Q ss_pred -----CCCCCcCCccc--------CCC---------c-cccCCCCCCHHHHHHHHHHHHHHHHcCC--C--Ceeeccccc
Q 038365 69 -----FPAVDFSLIES--------DED---------V-LWKANVRETNEEVAARGLKFMNCMTGSD--S--SSTNYPGKI 121 (148)
Q Consensus 69 -----fp~~~f~~~~~--------~~d---------~-~w~~~~gEs~~~v~~Rv~~fl~~i~~~~--~--~vVsHgg~I 121 (148)
+-|++|+.+.. ..+ + ...+++|||+.++..|+..|+++|.... . .|||||++|
T Consensus 74 ~~~~~L~E~~~G~~eg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg~~i 153 (199)
T PRK15004 74 HIIPELNEMFFGDWEMRHHRDLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQGVL 153 (199)
T ss_pred eeChhheeCCCcccCCCCHHHHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcChHHH
Confidence 23556654420 000 1 1124689999999999999999998653 2 469999999
Q ss_pred ccC
Q 038365 122 PSA 124 (148)
Q Consensus 122 ~~~ 124 (148)
+++
T Consensus 154 ~~l 156 (199)
T PRK15004 154 SLL 156 (199)
T ss_pred HHH
Confidence 743
No 12
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.84 E-value=2e-21 Score=151.84 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=80.4
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh-----
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL----- 68 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~----- 68 (148)
-|+|||||||||.+|+.++. +|+.|+|||+.|++| .+++|+..|++++++..
T Consensus 2 ~~~i~LVRHGet~~n~~~~~-------~G~~d~~Lt~~G~~qA~~~~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~ 74 (206)
T PRK01295 2 SRTLVLVRHGQSEWNLKNLF-------TGWRDPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQLILEELG 74 (206)
T ss_pred CceEEEEeCCCCcccccCCc-------CCCCCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEeCCcHHHHHHHHHHHHHcC
Confidence 37899999999999999875 799999999999999 35789999998877631
Q ss_pred -----------CCCCCcCCccc--------CC----------CccccCCCCCCHHHHHHHHHHH-HHHHHcC---CC--C
Q 038365 69 -----------FPAVDFSLIES--------DE----------DVLWKANVRETNEEVAARGLKF-MNCMTGS---DS--S 113 (148)
Q Consensus 69 -----------fp~~~f~~~~~--------~~----------d~~w~~~~gEs~~~v~~Rv~~f-l~~i~~~---~~--~ 113 (148)
+-|++|+.+.. .. +..+.+|+|||+.+|.+|+..+ ++.|..+ .. .
T Consensus 75 ~~~~~~~~~~~L~E~~~G~~eg~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vl 154 (206)
T PRK01295 75 QPGLETIRDQALNERDYGDLSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVL 154 (206)
T ss_pred CCCCCeEECCcccccccccccCCcHHHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 22455654321 00 1123457999999999999997 4566542 12 4
Q ss_pred eeecccccccC
Q 038365 114 STNYPGKIPSA 124 (148)
Q Consensus 114 vVsHgg~I~~~ 124 (148)
|||||++|+++
T Consensus 155 iVtHg~~ir~l 165 (206)
T PRK01295 155 VAAHGNSLRAL 165 (206)
T ss_pred EEcChHHHHHH
Confidence 69999999744
No 13
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.84 E-value=3.6e-21 Score=149.23 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=81.0
Q ss_pred EEEEeeCCcccccccCCcccccccCCCcc-CCCCChhhhhc--------------ccccCCCCCCHHHHHH---------
Q 038365 12 EKQMVRHAQGLHNVDGDKNYKAYLSPEYF-DAPVTQLGWQQ--------------GVHPCDKRRSISDYQF--------- 67 (148)
Q Consensus 12 ~iyLvRHGeT~~N~~~r~~~~~y~~qg~~-D~pLTe~G~~Q--------------~~~~~d~~r~~~~i~~--------- 67 (148)
+|||||||||.||..++. +|+. |+|||++|++| .+++|+..|++++++.
T Consensus 1 ~i~lvRHG~t~~n~~~~~-------~g~~~d~~Lt~~G~~qa~~l~~~l~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 73 (204)
T TIGR03848 1 TVILVRHGRSTANTAGTL-------AGRTPGVDLDERGREQAAALAERLADLPIAAIVSSPLERCRETAEPIAEARGLPP 73 (204)
T ss_pred CEEEEeCCCCCccccccc-------cCCCCCCCcCHHHHHHHHHHHHHHhcCCCCEEEeCcHHHHHHHHHHHHHhcCCCc
Confidence 489999999999999875 7888 59999999999 4789999999887763
Q ss_pred ----hCCCCCcCCccc-------CC---------CccccCCCCCCHHHHHHHHHHHHHHHHcC------C-C--Ceeecc
Q 038365 68 ----LFPAVDFSLIES-------DE---------DVLWKANVRETNEEVAARGLKFMNCMTGS------D-S--SSTNYP 118 (148)
Q Consensus 68 ----~fp~~~f~~~~~-------~~---------d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~------~-~--~vVsHg 118 (148)
.+-|++|+.+.. .. +..+.+|+|||+.++..|+..+++++.++ . . .|||||
T Consensus 74 ~~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg 153 (204)
T TIGR03848 74 RVDERLGECDYGDWTGRELKELAKEPLWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHG 153 (204)
T ss_pred eECcccccCCCCeeCCcCHHHHhCcHHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCC
Confidence 133556654321 00 11223578999999999999999998643 1 2 469999
Q ss_pred cccccCC
Q 038365 119 GKIPSAL 125 (148)
Q Consensus 119 g~I~~~~ 125 (148)
|+|++++
T Consensus 154 ~~ir~ll 160 (204)
T TIGR03848 154 DVIKSVL 160 (204)
T ss_pred hHHHHHH
Confidence 9997543
No 14
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.83 E-value=3.1e-21 Score=155.18 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=81.4
Q ss_pred cceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh----
Q 038365 9 RMTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL---- 68 (148)
Q Consensus 9 ~mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~---- 68 (148)
.|++|||||||||.||..++. +|+.|+|||++|++| .+++|+..|++++++..
T Consensus 3 ~m~~i~LVRHGqt~~n~~~~~-------~G~~D~pLTe~G~~QA~~~a~~l~~~~~~~~~IysSpl~Ra~qTA~~i~~~~ 75 (249)
T PRK14120 3 MTYTLVLLRHGESEWNAKNLF-------TGWVDVDLTEKGEAEAKRGGELLAEAGVLPDVVYTSLLRRAIRTANLALDAA 75 (249)
T ss_pred CCcEEEEEeCCCCcccccCCc-------CCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEecChHHHHHHHHHHHHhc
Confidence 478899999999999999875 799999999999999 36889999998776532
Q ss_pred ------------CCCCCcCCccc--------CCCc----ccc-----------------------------CCCCCCHHH
Q 038365 69 ------------FPAVDFSLIES--------DEDV----LWK-----------------------------ANVRETNEE 95 (148)
Q Consensus 69 ------------fp~~~f~~~~~--------~~d~----~w~-----------------------------~~~gEs~~~ 95 (148)
+-|++|+.+.. +.+. .|. +|+|||+.+
T Consensus 76 ~~~~~~i~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~~d~~~~~~~~~p~GES~~~ 155 (249)
T PRK14120 76 DRLWIPVRRSWRLNERHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQDNDPRYADLGVGPRTECLKD 155 (249)
T ss_pred ccCCCCeEECCCcccccccccCCCCHHHHHHHccHHHHHHHHhccccCCCccccccccccccCccccccCCCCCCCCHHH
Confidence 22445554321 0000 011 378999999
Q ss_pred HHHHHHHHHHHHH-cC--C-C--CeeecccccccCC
Q 038365 96 VAARGLKFMNCMT-GS--D-S--SSTNYPGKIPSAL 125 (148)
Q Consensus 96 v~~Rv~~fl~~i~-~~--~-~--~vVsHgg~I~~~~ 125 (148)
+.+|+..+|++++ .+ . . .|||||++|++.+
T Consensus 156 ~~~Rv~~~l~~~~~~~~~~~~~iliVsHggvir~l~ 191 (249)
T PRK14120 156 VVARFLPYWEDDIVPDLKAGKTVLIAAHGNSLRALV 191 (249)
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHH
Confidence 9999999999853 21 1 2 4699999998544
No 15
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.82 E-value=8.7e-21 Score=152.26 Aligned_cols=107 Identities=13% Similarity=0.145 Sum_probs=80.1
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh------
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL------ 68 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~------ 68 (148)
|+|||||||||.||..++. +|+.|+|||+.|++| .+++|+..|++++++..
T Consensus 1 ~~i~LVRHGqt~~n~~~~~-------~G~~D~pLte~G~~QA~~la~~L~~~~~~~d~IysSpl~Ra~qTA~~i~~~~~~ 73 (247)
T PRK14115 1 TKLVLIRHGESQWNKENRF-------TGWTDVDLSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRAIRTLWIVLDELDQ 73 (247)
T ss_pred CEEEEEECCCcccccccCc-------CCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHcCC
Confidence 4699999999999999875 799999999999999 36889999998776632
Q ss_pred ----------CCCCCcCCcccC--------C-----------------------------Ccc------ccCCCCCCHHH
Q 038365 69 ----------FPAVDFSLIESD--------E-----------------------------DVL------WKANVRETNEE 95 (148)
Q Consensus 69 ----------fp~~~f~~~~~~--------~-----------------------------d~~------w~~~~gEs~~~ 95 (148)
+-|++|+.+... . +.. ...|+|||+.+
T Consensus 74 ~~~~~~~~~~L~E~~fG~~eG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~GES~~~ 153 (247)
T PRK14115 74 MWLPVEKSWRLNERHYGALQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKDDERYPGHDPRYAKLPEEELPLTESLKD 153 (247)
T ss_pred CCCCceECccccccccccccCCCHHHHHHHhhHHHHHHHhcccccCCCcccccccccccccchhhcccCCCCCCCCcHHH
Confidence 224456543210 0 000 12478999999
Q ss_pred HHHHHHHHHHHHHcC----CC--CeeecccccccC
Q 038365 96 VAARGLKFMNCMTGS----DS--SSTNYPGKIPSA 124 (148)
Q Consensus 96 v~~Rv~~fl~~i~~~----~~--~vVsHgg~I~~~ 124 (148)
+..|+..+|++++.+ .. .||||||+|+++
T Consensus 154 ~~~Rv~~~l~~~i~~~~~~~~~vlvVtHggvir~l 188 (247)
T PRK14115 154 TIARVLPYWNETIAPQLKSGKRVLIAAHGNSLRAL 188 (247)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEeChHHHHHH
Confidence 999999999987531 12 469999999754
No 16
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.82 E-value=1e-20 Score=151.70 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=79.1
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh------
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL------ 68 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~------ 68 (148)
++|||||||||.||..+++ +|+.|+|||+.|++| .+++|+..|++++++..
T Consensus 1 ~~l~lVRHGqt~~n~~~~~-------~G~~D~~Lt~~G~~QA~~la~~L~~~~~~~d~iysSpl~Ra~qTA~ii~~~~~~ 73 (245)
T TIGR01258 1 MKLVLVRHGESEWNALNLF-------TGWVDVKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIHTLNIALDELDQ 73 (245)
T ss_pred CEEEEEeCCCcCccccCCc-------CCCCCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHHHHhcCC
Confidence 4699999999999999875 799999999999999 35789999988765522
Q ss_pred ----------CCCCCcCCcccC--------C-----------------------------Cccc------cCCCCCCHHH
Q 038365 69 ----------FPAVDFSLIESD--------E-----------------------------DVLW------KANVRETNEE 95 (148)
Q Consensus 69 ----------fp~~~f~~~~~~--------~-----------------------------d~~w------~~~~gEs~~~ 95 (148)
+-|++|+.+... . +..| ..|+|||+.+
T Consensus 74 ~~~~i~~~~~L~E~~~G~~eG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~~d~~y~~~~~~~~p~GES~~~ 153 (245)
T TIGR01258 74 LWIPVKKSWRLNERHYGALQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHNDPRYAHLDPKVLPLTESLKD 153 (245)
T ss_pred CCCCeeeCcccccccCCCCcCCCHHHHHHHhhHHHHHHHHhhccCCCCcCCcccccccccChhhhcCCcccCCCCCCHHH
Confidence 123345433210 0 0011 1468999999
Q ss_pred HHHHHHHHHHHHHcC----CC--CeeecccccccC
Q 038365 96 VAARGLKFMNCMTGS----DS--SSTNYPGKIPSA 124 (148)
Q Consensus 96 v~~Rv~~fl~~i~~~----~~--~vVsHgg~I~~~ 124 (148)
+.+|+..+|++++.+ .. .|||||++|+++
T Consensus 154 ~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~vir~l 188 (245)
T TIGR01258 154 TIARVLPYWNDEIAPDLLSGKRVLIVAHGNSLRAL 188 (245)
T ss_pred HHHHHHHHHHHHHhhhhcCCCEEEEEcChHHHHHH
Confidence 999999999998642 12 469999999854
No 17
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.81 E-value=2.1e-20 Score=141.04 Aligned_cols=104 Identities=17% Similarity=0.119 Sum_probs=78.0
Q ss_pred EEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc--------------ccccCCCCCCHHHHHHh----------
Q 038365 13 KQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ--------------GVHPCDKRRSISDYQFL---------- 68 (148)
Q Consensus 13 iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q--------------~~~~~d~~r~~~~i~~~---------- 68 (148)
|||||||||.+|..++. |+.|+|||+.|++| .+++|+..|++++++..
T Consensus 1 i~lvRHg~t~~n~~~~~--------g~~d~~Lt~~G~~qa~~l~~~l~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~~~ 72 (177)
T TIGR03162 1 LYLIRHGETDVNAGLCY--------GQTDVPLAEKGAEQAAALREKLADVPFDAVYSSPLSRCRELAEILAERRGLPIIK 72 (177)
T ss_pred CEEEeCCCCccCCCcee--------CCCCCCcChhHHHHHHHHHHHhcCCCCCEEEECchHHHHHHHHHHHhhcCCCceE
Confidence 69999999999998752 77899999999999 46889999998876531
Q ss_pred ---CCCCCcCCccc--------C---------CCccccCCCCCCHHHHHHHHHHHHHHHHcCC--C--CeeecccccccC
Q 038365 69 ---FPAVDFSLIES--------D---------EDVLWKANVRETNEEVAARGLKFMNCMTGSD--S--SSTNYPGKIPSA 124 (148)
Q Consensus 69 ---fp~~~f~~~~~--------~---------~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~--~--~vVsHgg~I~~~ 124 (148)
+-|++|+.+.. . .+..+.+++|||+.++.+|+..++++|..+. . .|||||++|++.
T Consensus 73 ~~~L~E~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsHg~~i~~l 152 (177)
T TIGR03162 73 DPRLREMDFGDWEGRSWDEIPEAYPELDAWAADWQHARPPGGESFADFYQRVSEFLEELLKAHEGDNVLIVTHGGVIRAL 152 (177)
T ss_pred CCccccccCCccCCCCHHHHHHhCHHHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHH
Confidence 22444443210 0 0112345789999999999999999998753 2 469999999754
No 18
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.81 E-value=3.9e-20 Score=155.43 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=84.0
Q ss_pred ccceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc---------------ccccCCCCCCHHHHHHh----
Q 038365 8 FRMTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ---------------GVHPCDKRRSISDYQFL---- 68 (148)
Q Consensus 8 ~~mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q---------------~~~~~d~~r~~~~i~~~---- 68 (148)
..|++|||||||||.+|..++. +|+.|+|||++|++| .+++|+..|++++++..
T Consensus 169 ~~~~~i~LvRHGet~~n~~~~~-------~g~~D~~Lt~~G~~QA~~l~~~l~~~~~~d~i~sSpl~Ra~qTA~~i~~~~ 241 (372)
T PRK07238 169 GTPTRLLLLRHGQTELSVQRRY-------SGRGNPELTEVGRRQAAAAARYLAARGGIDAVVSSPLQRARDTAAAAAKAL 241 (372)
T ss_pred CCceEEEEEeCCCCCcccCCee-------eCCCCCCcCHHHHHHHHHHHHHHhccCCCCEEEECChHHHHHHHHHHHHhc
Confidence 4678999999999999998874 688999999999999 25789999998877521
Q ss_pred ---------CCCCCcCCccc--------C---------CCccccCCCCCCHHHHHHHHHHHHHHHHcCC--C--Ceeecc
Q 038365 69 ---------FPAVDFSLIES--------D---------EDVLWKANVRETNEEVAARGLKFMNCMTGSD--S--SSTNYP 118 (148)
Q Consensus 69 ---------fp~~~f~~~~~--------~---------~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~--~--~vVsHg 118 (148)
+-|++|+.+.. . .+..+.+|+|||+.++.+|+..|+++|...+ . .|||||
T Consensus 242 ~~~~~~~~~L~E~~~G~~eg~~~~ei~~~~p~~~~~w~~~~~~~~p~gEs~~~~~~Rv~~~l~~l~~~~~~~~vlvVtHg 321 (372)
T PRK07238 242 GLDVTVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADTSVAPPGGESFDAVARRVRRARDRLIAEYPGATVLVVSHV 321 (372)
T ss_pred CCCcEECccceeCCCCccCCCCHHHHHHHCHHHHHHHHhCCCCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEECh
Confidence 22445554321 0 0123556899999999999999999998653 2 469999
Q ss_pred ccccc
Q 038365 119 GKIPS 123 (148)
Q Consensus 119 g~I~~ 123 (148)
++|++
T Consensus 322 ~~ir~ 326 (372)
T PRK07238 322 TPIKT 326 (372)
T ss_pred HHHHH
Confidence 99973
No 19
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.78 E-value=3.3e-19 Score=132.03 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=77.6
Q ss_pred EEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc-----------------ccccCCCCCCHHHHHHh------
Q 038365 12 EKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ-----------------GVHPCDKRRSISDYQFL------ 68 (148)
Q Consensus 12 ~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q-----------------~~~~~d~~r~~~~i~~~------ 68 (148)
+|||||||||.+|..+.. +|+.|+|||+.|++| .+++|+..|++++++..
T Consensus 1 ~i~lvRHG~s~~n~~~~~-------~g~~d~~Lt~~G~~qa~~~a~~l~~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~ 73 (155)
T smart00855 1 RLYLIRHGETEANREGRL-------TGWTDSPLTELGRAQAEALGELLASLGRLRFDVIYSSPLLRARETAEALAIALGL 73 (155)
T ss_pred CEEEEeCCCCcccccCeE-------cCCCCCCCCHHHHHHHHHHHHHHHhccCCCCCEEEeCchHHHHHHHHHHHHhcCC
Confidence 489999999999987753 466899999999999 24688888988876521
Q ss_pred ------CCCCCcCCccc-----------C---CCccccCCCCCCHHHHHHHHHHHHHHHHcCC----C--Ceeecccccc
Q 038365 69 ------FPAVDFSLIES-----------D---EDVLWKANVRETNEEVAARGLKFMNCMTGSD----S--SSTNYPGKIP 122 (148)
Q Consensus 69 ------fp~~~f~~~~~-----------~---~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~----~--~vVsHgg~I~ 122 (148)
+.+++|+.+.. + ....+.+++|||+.++..|+..|++.|..++ . .||+||++|+
T Consensus 74 ~~~~~~L~E~~~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir 153 (155)
T smart00855 74 GEVDPRLRERDYGAWEGLTKEEERAKAWTRPADWLGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIR 153 (155)
T ss_pred CCCChhhhhcccceecCCcHHHHHHHHHHHHhccCCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCcccc
Confidence 23445543210 0 0022345789999999999999999998642 2 4699999998
Q ss_pred c
Q 038365 123 S 123 (148)
Q Consensus 123 ~ 123 (148)
+
T Consensus 154 ~ 154 (155)
T smart00855 154 A 154 (155)
T ss_pred c
Confidence 5
No 20
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.77 E-value=6.2e-20 Score=134.19 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=77.2
Q ss_pred EEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHH--------
Q 038365 12 EKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQF-------- 67 (148)
Q Consensus 12 ~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~-------- 67 (148)
+||||||||+.||..++. +++.|+|||+.|++| .+++|+..|+++++..
T Consensus 1 ~i~liRHg~~~~n~~~~~-------~~~~d~~Lt~~G~~qA~~~~~~l~~~~~~~~~i~~Sp~~R~~qTA~~~~~~~~~~ 73 (158)
T PF00300_consen 1 RIYLIRHGESEFNAEGRV-------QGDSDPPLTERGREQARQLGEYLAERDIQIDVIYSSPLRRCIQTAEIIAEGLGIE 73 (158)
T ss_dssp EEEEEE-S-BHHHHTTBC-------GTTSSTGBEHHHHHHHHHHHHHHHHTTSSCSEEEEESSHHHHHHHHHHHHHHTSE
T ss_pred CEEEEECCccccccCCCc-------CCCCCccccHHHHHHHHhhcccccccccCceEEecCCcchhhhhhchhhcccccc
Confidence 699999999999998874 688899999999999 3678999999877662
Q ss_pred -----hCCCCCcCCccc------------------CCCccccCCCCCCHHHHHHHHHHHHHHHHc--CC-C--Ceeeccc
Q 038365 68 -----LFPAVDFSLIES------------------DEDVLWKANVRETNEEVAARGLKFMNCMTG--SD-S--SSTNYPG 119 (148)
Q Consensus 68 -----~fp~~~f~~~~~------------------~~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~--~~-~--~vVsHgg 119 (148)
.+.+++|+.+.. ..+..+.++++||..++..|+..++++|.. .+ . .|||||+
T Consensus 74 ~~~~~~l~E~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~~~~~~~~vliVsHg~ 153 (158)
T PF00300_consen 74 IIVDPRLREIDFGDWEGRPFDEIEEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIAYKRPGENVLIVSHGG 153 (158)
T ss_dssp EEEEGGGSCCGCGGGTTSBHHHHHHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEE-HH
T ss_pred cccccccccccchhhcccchhhHHhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHHHhCCCCEEEEEecHH
Confidence 233455532110 112344557899999999999999999994 22 2 4699999
Q ss_pred cccc
Q 038365 120 KIPS 123 (148)
Q Consensus 120 ~I~~ 123 (148)
+|++
T Consensus 154 ~i~~ 157 (158)
T PF00300_consen 154 FIRA 157 (158)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9975
No 21
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.75 E-value=1.8e-18 Score=155.31 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=80.7
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc-----------------ccccCCCCCCHHHHH-------
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ-----------------GVHPCDKRRSISDYQ------- 66 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q-----------------~~~~~d~~r~~~~i~------- 66 (148)
++|||||||||.||..+++ +| |+|||+.|++| .+++|++.|++++++
T Consensus 420 m~i~LiRHGeT~~n~~~r~-------~G--d~pLt~~G~~qA~~l~~~l~~~~~~~~~~V~sSpl~Ra~~TA~~i~~~~~ 490 (664)
T PTZ00322 420 MNLYLTRAGEYVDLLSGRI-------GG--NSRLTERGRAYSRALFEYFQKEISTTSFTVMSSCAKRCTETVHYFAEESI 490 (664)
T ss_pred ceEEEEecccchhhhcCcc-------CC--CCccCHHHHHHHHHHHHHHHhccCCCCcEEEcCCcHHHHHHHHHHHhccc
Confidence 5799999999999999985 67 99999999999 257899999887742
Q ss_pred -----------------------HhCCCCCcCCccc--------C---------CC-ccccCCCCCCHHHHH-HHHHHHH
Q 038365 67 -----------------------FLFPAVDFSLIES--------D---------ED-VLWKANVRETNEEVA-ARGLKFM 104 (148)
Q Consensus 67 -----------------------~~fp~~~f~~~~~--------~---------~d-~~w~~~~gEs~~~v~-~Rv~~fl 104 (148)
..+.|++|+.+.. . .+ ..+.+|+|||+.++. .|+..++
T Consensus 491 ~~~~~~~~a~~~~~~~~~~~~~~~~L~Ei~fG~wEG~t~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i 570 (664)
T PTZ00322 491 LQQSTASAASSQSPSLNCRVLYFPTLDDINHGDCEGQLLSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPHI 570 (664)
T ss_pred cccccccccccccccccccccchhhhCcCCCcccCCCCHHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHHHH
Confidence 2344667775431 0 01 123457999999965 7999999
Q ss_pred HHHHcCCC--CeeecccccccCC
Q 038365 105 NCMTGSDS--SSTNYPGKIPSAL 125 (148)
Q Consensus 105 ~~i~~~~~--~vVsHgg~I~~~~ 125 (148)
.+|..... .||||||+||+++
T Consensus 571 ~~l~~~~~~ilvVsHg~vir~ll 593 (664)
T PTZ00322 571 HDIQASTTPVLVVSHLHLLQGLY 593 (664)
T ss_pred HHHHccCCCEEEEeCcHHHHHHH
Confidence 99965443 4799999998544
No 22
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=8.4e-18 Score=132.56 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=79.8
Q ss_pred ccceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHhC--
Q 038365 8 FRMTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFLF-- 69 (148)
Q Consensus 8 ~~mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~f-- 69 (148)
....++.|||||||+||+++++ |||.|.|||+.|.+| .+++|++.|++++++...
T Consensus 3 ~~~~~lvlvRHGes~wN~e~~~-------~G~~D~~Lte~G~~qA~~~~~~l~~~~~~~~~~~tS~l~RakqT~~~il~~ 75 (214)
T KOG0235|consen 3 SNTFRLVLVRHGESEWNKENIF-------QGWIDAPLTEKGEEQAKAAAQRLKDLNIEFDVCYTSDLKRAKQTAELILEE 75 (214)
T ss_pred CcceEEEEEecCchhhhhhCcc-------cccccCccChhhHHHHHHHHHHHHhcCCcccEEecCHHHHHHHHHHHHHHh
Confidence 3567899999999999999986 999999999999999 245788888887766211
Q ss_pred ------C--------CCCcCCcc-----------c----CCCcccc------CCCCCCHHHHHHHHHHHHHHHHcCCC--
Q 038365 70 ------P--------AVDFSLIE-----------S----DEDVLWK------ANVRETNEEVAARGLKFMNCMTGSDS-- 112 (148)
Q Consensus 70 ------p--------~~~f~~~~-----------~----~~d~~w~------~~~gEs~~~v~~Rv~~fl~~i~~~~~-- 112 (148)
| +..|+.+. . .++..|. .|.+||+.++..|+..|+++......
T Consensus 76 ~~~~~~pv~~~~~L~ER~yG~l~Gl~~~e~~~~~g~~~~~~~~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~ 155 (214)
T KOG0235|consen 76 LKQKKVPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKE 155 (214)
T ss_pred hccCCcceEechhhchhhhccccCccHHHHHHHcchhccccchhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcC
Confidence 1 11222111 0 0112222 36899999999999999998886542
Q ss_pred ----CeeecccccccC
Q 038365 113 ----SSTNYPGKIPSA 124 (148)
Q Consensus 113 ----~vVsHgg~I~~~ 124 (148)
.|++||..+|+.
T Consensus 156 gk~Vli~aHGnsLR~i 171 (214)
T KOG0235|consen 156 GKNVLIVAHGNSLRAI 171 (214)
T ss_pred CcEEEEEcCcHHHHHH
Confidence 359999998743
No 23
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=99.43 E-value=6.4e-14 Score=102.84 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=66.7
Q ss_pred EEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHhCCCC-Cc
Q 038365 12 EKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFLFPAV-DF 74 (148)
Q Consensus 12 ~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~fp~~-~f 74 (148)
+||||||||+.+|..++. .+..|.|||+.|++| .+++|+..|++++++.....+ +.
T Consensus 1 ~i~liRHg~~~~~~~~~~-------~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~ 73 (153)
T cd07067 1 RLYLVRHGESEWNAEGRF-------QGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAIQTAEIILEELPGL 73 (153)
T ss_pred CEEEEECCCCcccccCcc-------cCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHHHHHHHHHHHHhcCCC
Confidence 489999999999987652 467899999999999 367899999998887554332 11
Q ss_pred CCcccCCCccccCCCCCCHHHHHHHHHHHHHHHHcC--CC--Ceeeccccccc
Q 038365 75 SLIESDEDVLWKANVRETNEEVAARGLKFMNCMTGS--DS--SSTNYPGKIPS 123 (148)
Q Consensus 75 ~~~~~~~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~--~~--~vVsHgg~I~~ 123 (148)
. +. .+ +.+.+ .|+..+++.+... .. .||+||++|+.
T Consensus 74 ~-~~--~~--------~~L~e--~R~~~~~~~l~~~~~~~~iliV~H~~~i~~ 113 (153)
T cd07067 74 P-VE--VD--------PRLRE--ARVLPALEELIAPHDGKNVLIVSHGGVLRA 113 (153)
T ss_pred C-ce--eC--------ccchH--HHHHHHHHHHHHhCCCCeEEEEeChHHHHH
Confidence 1 10 01 11111 8999999999875 22 46999999963
No 24
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.37 E-value=6.9e-13 Score=109.41 Aligned_cols=103 Identities=20% Similarity=0.117 Sum_probs=66.3
Q ss_pred cceEEEEeeCCcccccccCCcccccccCCCccCCC---CChhhhhc---------c-------------cccCCCCCCHH
Q 038365 9 RMTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAP---VTQLGWQQ---------G-------------VHPCDKRRSIS 63 (148)
Q Consensus 9 ~mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~p---LTe~G~~Q---------~-------------~~~~d~~r~~~ 63 (148)
+-+.||||||||+.++ + +.|.| ||++|++| . +++||+.|+++
T Consensus 101 ~~~~L~LVRHGq~~~~--~-----------~~d~~~~~LTe~G~~QA~~lg~~L~~~~~~~~~~~~~d~IysSPL~RA~q 167 (299)
T PTZ00122 101 HQRQIILVRHGQYINE--S-----------SNDDNIKRLTELGKEQARITGKYLKEQFGEILVDKKVKAIYHSDMTRAKE 167 (299)
T ss_pred ceeEEEEEECCCCCCC--C-----------CCCcccCCCCHHHHHHHHHHHHHHHHhhccccccCCCCEEEEcCcHHHHH
Confidence 4489999999995443 2 33555 99999999 2 26789999988
Q ss_pred HHHH---hCCCCCc------CCcc---cCCC-ccccCCCCCCHHHHHHHHHHHHHHHHcCC-----C--Ceeeccccccc
Q 038365 64 DYQF---LFPAVDF------SLIE---SDED-VLWKANVRETNEEVAARGLKFMNCMTGSD-----S--SSTNYPGKIPS 123 (148)
Q Consensus 64 ~i~~---~fp~~~f------~~~~---~~~d-~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~-----~--~vVsHgg~I~~ 123 (148)
+++. .++.... .+.. +... ..+.++ +|+..++.+|+..+++.+..+. . .||+|||+|++
T Consensus 168 TAeiIa~~~~~~~v~~d~~LrEG~~~~~~~~~~~~~~~-gee~~~~~~Rv~~al~~i~~r~~~~~~~~vLVVsHGgvIR~ 246 (299)
T PTZ00122 168 TAEIISEAFPGVRLIEDPNLAEGVPCAPDPPSRGFKPT-IEEILEDMKRIEAAFEKYFHRPVEDEDSVEIIVCHGNVIRY 246 (299)
T ss_pred HHHHHHHhCCCCCceeCcccccCCccccCccccccCCC-cchHHHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChHHHH
Confidence 7663 2432211 1110 0011 123334 4444777999999999998542 2 46999999974
Q ss_pred CC
Q 038365 124 AL 125 (148)
Q Consensus 124 ~~ 125 (148)
++
T Consensus 247 ll 248 (299)
T PTZ00122 247 LV 248 (299)
T ss_pred HH
Confidence 43
No 25
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2e-13 Score=107.46 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=32.9
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ 51 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q 51 (148)
|.++.|+||||++||..+++ -||.|.+||++|++|
T Consensus 1 ~~~Lvl~RHGqSeWN~~NlF-------tGW~Dv~LtekG~~E 35 (230)
T COG0588 1 MMKLVLLRHGQSEWNKENLF-------TGWVDVDLTEKGISE 35 (230)
T ss_pred CceEEEEecCchhhhhcCce-------eeeeecCcchhhHHH
Confidence 67899999999999999985 799999999999999
No 26
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.35 E-value=2e-13 Score=108.70 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=67.3
Q ss_pred ccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh----------------CC
Q 038365 23 HNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL----------------FP 70 (148)
Q Consensus 23 ~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~----------------fp 70 (148)
||+.+++ ||+.|+|||++|++| .+++|+..|++++++.. +-
T Consensus 1 ~N~~~~~-------qG~~D~pLTe~G~~QA~~l~~~L~~~~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~L~ 73 (236)
T PTZ00123 1 WNKENRF-------TGWTDVPLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLN 73 (236)
T ss_pred CcccCce-------eCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcCCCCCCceeCchhh
Confidence 6888875 899999999999999 35789999998776532 12
Q ss_pred CCCcCCcccC---------CC---ccc-------------------------------cCCCCCCHHHHHHHHHHHHHHH
Q 038365 71 AVDFSLIESD---------ED---VLW-------------------------------KANVRETNEEVAARGLKFMNCM 107 (148)
Q Consensus 71 ~~~f~~~~~~---------~d---~~w-------------------------------~~~~gEs~~~v~~Rv~~fl~~i 107 (148)
+++|+.+... .+ .+| .+|+|||+.++.+|+..+++++
T Consensus 74 E~~~G~~EG~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gES~~~~~~Rv~~~l~~l 153 (236)
T PTZ00123 74 ERHYGALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPGNDPVYKDIPKDALPNTECLKDTVERVLPYWEDH 153 (236)
T ss_pred hcccccccCCCHHHHHHHccHHHHHHHhcccCCCCCCcccccccccccchhhhccccCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3445433200 00 001 2368999999999999999987
Q ss_pred HcC----CC--CeeecccccccC
Q 038365 108 TGS----DS--SSTNYPGKIPSA 124 (148)
Q Consensus 108 ~~~----~~--~vVsHgg~I~~~ 124 (148)
+.+ .. .|||||++|+++
T Consensus 154 i~~~~~~~~~vliVsHG~vir~l 176 (236)
T PTZ00123 154 IAPDILAGKKVLVAAHGNSLRAL 176 (236)
T ss_pred HHHHhhCCCeEEEEeCHHHHHHH
Confidence 532 12 469999999743
No 27
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=99.28 E-value=1.6e-12 Score=94.45 Aligned_cols=88 Identities=23% Similarity=0.302 Sum_probs=65.2
Q ss_pred EEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHhCCCC--C
Q 038365 12 EKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFLFPAV--D 73 (148)
Q Consensus 12 ~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~fp~~--~ 73 (148)
+|||||||++.+|..++. .+..|.|||+.|++| .+++|+..|+.++++.....+ .
T Consensus 1 ~i~liRHg~~~~~~~~~~-------~~~~d~~Lt~~G~~qa~~l~~~l~~~~~~~~~v~sSp~~R~~~Ta~~~~~~~~~~ 73 (153)
T cd07040 1 VLYLVRHGEREPNAEGRF-------TGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAIQTAEIILEGLFEG 73 (153)
T ss_pred CEEEEeCCCCccccCCCc-------cCCCCCCcCHHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHHHHHHhcCC
Confidence 489999999999988652 477899999999999 357889999998887543332 1
Q ss_pred cCCcccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCC----C--Ceeecccccc
Q 038365 74 FSLIESDEDVLWKANVRETNEEVAARGLKFMNCMTGSD----S--SSTNYPGKIP 122 (148)
Q Consensus 74 f~~~~~~~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~----~--~vVsHgg~I~ 122 (148)
.. +... +. .|+..++.++..+. . .+|+|+++|+
T Consensus 74 ~~-~~~~-------~~--------~r~~~~~~~~~~~~~~~~~~iliv~H~~~i~ 112 (153)
T cd07040 74 LP-VEVD-------PR--------ARVLNALLELLARHLLDGKNVLIVSHGGTIR 112 (153)
T ss_pred CC-eEEC-------HH--------HHHHHHHHHHHHhhCCCCCEEEEEeCCHHHH
Confidence 11 1000 00 99999999998852 2 3599999996
No 28
>PRK06193 hypothetical protein; Provisional
Probab=99.24 E-value=1.7e-11 Score=96.43 Aligned_cols=108 Identities=12% Similarity=0.031 Sum_probs=75.5
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCcc-----CCCCChhhhhc----------------ccccCCCCCCHHHHHHhC
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYF-----DAPVTQLGWQQ----------------GVHPCDKRRSISDYQFLF 69 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~-----D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~f 69 (148)
..|||||||||++|..++. .|.. |.|||+.|++| .+++|+..|++++++..+
T Consensus 43 ~~L~LvRHGet~~n~~~~~-------~gd~d~~~~~rpLt~~G~~qA~~l~~~L~~~~~~~d~V~sSpl~Ra~qTA~il~ 115 (206)
T PRK06193 43 GYVIYFRHAATDRSQADQD-------TSDMDDCSTQRNLSEEGREQARAIGEAFRALAIPVGKVISSPYCRAWETAQLAF 115 (206)
T ss_pred CEEEEEeCccCCCCccCCc-------ccccccCcCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHh
Confidence 6899999999999987653 3433 57999999999 367899999999988766
Q ss_pred CCCCcCCcccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCCC--CeeecccccccCCcc
Q 038365 70 PAVDFSLIESDEDVLWKANVRETNEEVAARGLKFMNCMTGSDS--SSTNYPGKIPSALDL 127 (148)
Q Consensus 70 p~~~f~~~~~~~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~~--~vVsHgg~I~~~~~~ 127 (148)
.......-....+ ...+.+|+.....+|+..+|+++..... .+|+|+-+|+...-+
T Consensus 116 ~~~~~~~~l~~~~--~~~~~~~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp~i~~l~g~ 173 (206)
T PRK06193 116 GRHEKEIRLNFLN--SEPVPAERNALLKAGLRPLLTTPPDPGTNTVLVGHDDNLEAATGI 173 (206)
T ss_pred cccccCccccccc--ccCCChhhHHHHHHHHHHHHhhCCCCCCeEEEEeCchHHHHHhCC
Confidence 4321110000000 0122468899999999999999875433 359999999744333
No 29
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=98.97 E-value=7.8e-10 Score=82.71 Aligned_cols=94 Identities=10% Similarity=-0.021 Sum_probs=58.2
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHhCCCCCc
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFLFPAVDF 74 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~fp~~~f 74 (148)
++|||||||++.+|..+ ..|.|||+.|++| .+++|+..|++++++..-..+..
T Consensus 1 m~l~LvRHg~a~~~~~~-----------d~dr~Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra~qTa~~l~~~~~~ 69 (152)
T TIGR00249 1 MQLFIMRHGDAALDAAS-----------DSVRPLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAEQTAEIVGDCLNL 69 (152)
T ss_pred CEEEEEeCCCcccccCC-----------CCCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHHcCC
Confidence 37999999999998652 3589999999999 36789999999887743222111
Q ss_pred CCcccCCCccccCCCCCCHHHHHHHHHHHHHHHHcC-CC--Ceeecccccc
Q 038365 75 SLIESDEDVLWKANVRETNEEVAARGLKFMNCMTGS-DS--SSTNYPGKIP 122 (148)
Q Consensus 75 ~~~~~~~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~-~~--~vVsHgg~I~ 122 (148)
..-....+..+ | +++..++...+ ..+..+ .. .||+|+.+|.
T Consensus 70 ~~~~~~~~~l~--p-~~~~~~~~~~l----~~~~~~~~~~vliVgH~P~i~ 113 (152)
T TIGR00249 70 PSSAEVLEGLT--P-CGDIGLVSDYL----EALTNEGVASVLLVSHLPLVG 113 (152)
T ss_pred CcceEEccCcC--C-CCCHHHHHHHH----HHHHhcCCCEEEEEeCCCCHH
Confidence 10000111121 2 34555544444 444332 22 4699999984
No 30
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=98.84 E-value=3.5e-09 Score=79.82 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=38.3
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL 68 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~ 68 (148)
++||||||||+.||..+ -.|.|||+.|++| .+++|+..|+.++++..
T Consensus 1 m~l~lvRHg~a~~~~~~-----------d~~rpLt~~G~~qa~~~~~~l~~~~~~~d~i~sSp~~Ra~qTa~~l 63 (159)
T PRK10848 1 MQVFIMRHGDAALDAAS-----------DSVRPLTTCGCDESRLMANWLKGQKVDIERVLVSPYLRAEQTLEVV 63 (159)
T ss_pred CEEEEEeCCCCCCCCCC-----------CcCCCcCHHHHHHHHHHHHHHHhCCCCCCEEEECCHHHHHHHHHHH
Confidence 36999999999998532 2478999999999 36789999999887743
No 31
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=5.6e-09 Score=89.68 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=73.4
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCC-------------
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRS------------- 61 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~------------- 61 (148)
.+|||.||||++.|+.|+. . .|++|++.|.+= .+.+|...|+
T Consensus 240 R~i~l~r~geS~~n~~gri-------g--gds~ls~~g~~ya~~l~~f~~~~~~~dl~vwts~~~rti~ta~~l~~~~~~ 310 (438)
T KOG0234|consen 240 RTIYLTRHGESEFNVEGRI-------G--GDSPLSERGSQYAKSLIKFVEEQSSSDLDVWTSQRKRTIQTAEGLKLDYSV 310 (438)
T ss_pred ceEEEEecCCCcccccccc-------C--CcccccHHHHHHHHHHHHHHhhhcccCceeccchHHHHhhhHhhcCcchhh
Confidence 5799999999999999974 3 599999999876 1233333333
Q ss_pred ------------------HHHHHHhCCCCCcCCcccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCCC-Ceeecccccc
Q 038365 62 ------------------ISDYQFLFPAVDFSLIESDEDVLWKANVRETNEEVAARGLKFMNCMTGSDS-SSTNYPGKIP 122 (148)
Q Consensus 62 ------------------~~~i~~~fp~~~f~~~~~~~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~~-~vVsHgg~I~ 122 (148)
.++++..||+ .|... ......++.++|||+.++..|.+..+-+|-.+.. .|++|..+||
T Consensus 311 ~~~~~Ldei~ag~~~g~t~eeI~~~~p~-e~~~r-~~dky~yry~~gESy~D~v~RlePvImElEr~~~Vlvi~Hqavir 388 (438)
T KOG0234|consen 311 EQWKALDEIDAGVCEGLTYEEIETNYPE-EFALR-DKDKYRYRYPGGESYSDLVQRLEPVIMELERQENVLVITHQAVIR 388 (438)
T ss_pred hhHhhcCcccccccccccHHHHHHhCch-hhhhc-cCCcceeecCCCCCHHHHHHhhhhHhHhhhhcccEEEEecHHHHH
Confidence 3455555655 33322 1223456678999999999999999998875443 4699999997
Q ss_pred c
Q 038365 123 S 123 (148)
Q Consensus 123 ~ 123 (148)
+
T Consensus 389 c 389 (438)
T KOG0234|consen 389 C 389 (438)
T ss_pred H
Confidence 3
No 32
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=98.56 E-value=5.1e-08 Score=76.53 Aligned_cols=91 Identities=10% Similarity=0.051 Sum_probs=54.5
Q ss_pred cceEEEEeeCCcc-cccccCCcccccccCCCccC-CCCChhhhhc---------------ccccCCCCCCHHHHHHhCCC
Q 038365 9 RMTEKQMVRHAQG-LHNVDGDKNYKAYLSPEYFD-APVTQLGWQQ---------------GVHPCDKRRSISDYQFLFPA 71 (148)
Q Consensus 9 ~mk~iyLvRHGeT-~~N~~~r~~~~~y~~qg~~D-~pLTe~G~~Q---------------~~~~~d~~r~~~~i~~~fp~ 71 (148)
..++||||||||+ .|+. + ++..| .|||+.|++| .+++||..|++++++...+.
T Consensus 53 ~~~~L~LiRHGet~~~~~-~---------~~~sD~RpLTerG~~qA~~lg~~L~~~~~~d~I~sSpa~Ra~qTAe~ia~~ 122 (201)
T PRK15416 53 QHPVVVLFRHAERCDRSD-N---------QCLSDKTGITVKGTQDARELGKAFSADIPDYDLYSSNTVRTIQSATWFSAG 122 (201)
T ss_pred CCCEEEEEeCccccCccC-C---------CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCCHHHHHHHHHHhcC
Confidence 3456999999998 3321 1 11122 5899999999 36789999999998865432
Q ss_pred CCcCCcccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCC--C--Ceeecccccc
Q 038365 72 VDFSLIESDEDVLWKANVRETNEEVAARGLKFMNCMTGSD--S--SSTNYPGKIP 122 (148)
Q Consensus 72 ~~f~~~~~~~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~--~--~vVsHgg~I~ 122 (148)
.... . -|.+.+...+...++.++..+. + .||+|.-+|.
T Consensus 123 ~~v~-----~--------~~~Lye~~~~~~~~i~~~i~~~~~~tVLIVGHnp~i~ 164 (201)
T PRK15416 123 KKLT-----V--------DKRLSDCGNGIYSAIKDLQRKSPDKNIVIFTHNHCLT 164 (201)
T ss_pred CCcE-----e--------cHHHhhcCchhHHHHHHHHHhCCCCEEEEEeCchhHH
Confidence 1110 0 1223333344444444444321 2 4699999973
No 33
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=98.13 E-value=1.6e-06 Score=66.07 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=41.4
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----------------ccccCCCCCCHHHHHHh
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----------------GVHPCDKRRSISDYQFL 68 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----------------~~~~~d~~r~~~~i~~~ 68 (148)
|+.|||+|||++.|-+.+. .=.|=|||+.|++| .+.+|+..|+++|++..
T Consensus 1 m~~L~LmRHgkA~~~~~~~---------~D~dR~Lt~~G~~ea~~~a~~L~~~~~~~D~VL~Spa~Ra~QTae~v 66 (163)
T COG2062 1 MMRLYLMRHGKAEWAAPGI---------ADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIV 66 (163)
T ss_pred CceEEEeecccccccCCCC---------CCccCcCCHHHHHHHHHHHHHHHhcCCCCCEEEeChhHHHHHHHHHH
Confidence 7899999999999987652 23578999999999 36789999999988854
No 34
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=6.4e-05 Score=61.50 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCC----Ceeecccccc
Q 038365 88 NVRETNEEVAARGLKFMNCMTGSDS----SSTNYPGKIP 122 (148)
Q Consensus 88 ~~gEs~~~v~~Rv~~fl~~i~~~~~----~vVsHgg~I~ 122 (148)
-.+||.++...|...++..|+.+.. .||+||.++.
T Consensus 169 ~~~es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~sv~ 207 (272)
T KOG3734|consen 169 RWGESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSSVD 207 (272)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCCCceEEEeccchHH
Confidence 3589999999999999999998743 4699999973
No 35
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=97.88 E-value=2.3e-05 Score=62.52 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=54.0
Q ss_pred ceEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc----c------------cccCCCCCCHHHHH---HhCC
Q 038365 10 MTEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ----G------------VHPCDKRRSISDYQ---FLFP 70 (148)
Q Consensus 10 mk~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q----~------------~~~~d~~r~~~~i~---~~fp 70 (148)
...|+||||||-.- . |-.| .||++|++| | +..|-.-|+.++.. +..|
T Consensus 94 tRhI~LiRHgeY~~--~-----------g~~~-hLTelGReQAE~tGkRL~elglk~d~vv~StM~RA~ETadIIlk~l~ 159 (284)
T KOG4609|consen 94 TRHIFLIRHGEYHV--D-----------GSLE-HLTELGREQAELTGKRLAELGLKFDKVVASTMVRATETADIILKHLP 159 (284)
T ss_pred hceEEEEeccceec--c-----------Cchh-hcchhhHHHHHHHhHHHHHcCCchhhhhhhhhhhhHHHHHHHHHhCC
Confidence 35699999998322 2 3334 899999999 1 22233334444333 3344
Q ss_pred CCCcC-----Ccc------cCC-CccccCCCCCCHHHHHHHHHHHHHHHHcC------CC---Ceeecccccc
Q 038365 71 AVDFS-----LIE------SDE-DVLWKANVRETNEEVAARGLKFMNCMTGS------DS---SSTNYPGKIP 122 (148)
Q Consensus 71 ~~~f~-----~~~------~~~-d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~------~~---~vVsHgg~I~ 122 (148)
+ +.. .+. +++ ...|++. .--+..=-.|+...+..++-+ ++ .||+|+-+||
T Consensus 160 d-~lk~~s~~ll~EGaP~ppdPp~k~wrp~-~~qy~rdgaRIEaafRryfhRA~p~QeedSy~liV~HaNVIR 230 (284)
T KOG4609|consen 160 D-DLKRVSCPLLREGAPYPPDPPVKHWRPL-DPQYYRDGARIEAAFRRYFHRASPSQEEDSYELIVCHANVIR 230 (284)
T ss_pred C-ccceecccccccCCCCCCCCCcccCCcc-ChHhhhcchHHHHHHHHHHhhcCcccccccEEEEEeecchhh
Confidence 2 110 010 111 1256642 222444457898888888743 12 5799999997
No 36
>cd07061 HP_HAP_like Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been
Probab=63.97 E-value=5.3 Score=31.13 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=18.4
Q ss_pred eEEEEeeCCcccccccCCcccccccCCCccCCCCChhhhhc
Q 038365 11 TEKQMVRHAQGLHNVDGDKNYKAYLSPEYFDAPVTQLGWQQ 51 (148)
Q Consensus 11 k~iyLvRHGeT~~N~~~r~~~~~y~~qg~~D~pLTe~G~~Q 51 (148)
..+.|+|||+-. + ..||..|++|
T Consensus 4 ~v~~~~RHg~r~--------------p----~~LT~~G~~q 26 (242)
T cd07061 4 QVQVLSRHGDRY--------------P----GELTPFGRQQ 26 (242)
T ss_pred EEEEEEecCCCC--------------c----hhhhHHHHHH
Confidence 467899999842 1 6899999999
No 37
>PRK10173 glucose-1-phosphatase/inositol phosphatase; Provisional
Probab=52.23 E-value=64 Score=28.01 Aligned_cols=38 Identities=16% Similarity=0.045 Sum_probs=22.2
Q ss_pred eEEEEeeCCc---cccc-c-cCC---cccccccCCCccCCCCChhhhhc
Q 038365 11 TEKQMVRHAQ---GLHN-V-DGD---KNYKAYLSPEYFDAPVTQLGWQQ 51 (148)
Q Consensus 11 k~iyLvRHGe---T~~N-~-~~r---~~~~~y~~qg~~D~pLTe~G~~Q 51 (148)
|.+.|-|||= +..| . ..+ ..|-. | ......||..|.+|
T Consensus 33 ~vvilsRHg~R~P~~~~~~~l~~~t~~~Wp~-w--~~~~G~LT~~G~~~ 78 (413)
T PRK10173 33 QVLMMSRHNLRAPLANNGSVLEQSTPNAWPE-W--DVPGGQLTTKGGVL 78 (413)
T ss_pred EEEEEeecccCCCCCCcchhhhhcCCCCCCC-C--CCCcccccHHHHHH
Confidence 6799999994 2222 1 110 01211 1 22468899999999
No 38
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=50.89 E-value=5.4 Score=31.93 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=8.7
Q ss_pred CCCChhhhhc
Q 038365 42 APVTQLGWQQ 51 (148)
Q Consensus 42 ~pLTe~G~~Q 51 (148)
..||+.|.+|
T Consensus 61 g~LT~~G~~q 70 (347)
T PF00328_consen 61 GQLTPRGMEQ 70 (347)
T ss_dssp TSBTHHHHHH
T ss_pred CcccchhhhH
Confidence 3499999999
No 39
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=25.54 E-value=33 Score=24.47 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=22.3
Q ss_pred cCCCCeeecccccccCCccceeeecccC
Q 038365 109 GSDSSSTNYPGKIPSALDLPADIAERSH 136 (148)
Q Consensus 109 ~~~~~vVsHgg~I~~~~~~p~~~~~~~~ 136 (148)
.++..++||..+|.--+-||++|-....
T Consensus 57 tee~glTshaAVvgl~LgvPvIvG~~~a 84 (111)
T COG3848 57 TEEGGLTSHAAVVGLELGVPVIVGVKKA 84 (111)
T ss_pred eccCCccccceeeEeecCCcEEEEecch
Confidence 4466899999999999999999844333
No 40
>PRK00865 glutamate racemase; Provisional
Probab=24.44 E-value=1.5e+02 Score=23.78 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=43.8
Q ss_pred HHHHHHhCCCCCcCCcccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCC-CC--e---eecccc---cccCCcccee
Q 038365 62 ISDYQFLFPAVDFSLIESDEDVLWKANVRETNEEVAARGLKFMNCMTGSD-SS--S---TNYPGK---IPSALDLPAD 130 (148)
Q Consensus 62 ~~~i~~~fp~~~f~~~~~~~d~~w~~~~gEs~~~v~~Rv~~fl~~i~~~~-~~--v---VsHgg~---I~~~~~~p~~ 130 (148)
..++.+.+|+.+|--+. |....|.|.-|.+++.+|+.+.++.+.+.. +. | ++|... ++...-||++
T Consensus 21 l~~i~~~lp~~~~iY~~---D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iPvi 95 (261)
T PRK00865 21 LREIRRLLPDEHIIYVG---DTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLRERYDIPVV 95 (261)
T ss_pred HHHHHHHCCCCCEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCCEE
Confidence 46788889987664222 334445566799999999999999998753 21 2 456432 4555567776
No 41
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=23.31 E-value=1.3e+02 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCC--CeeecccccccC
Q 038365 89 VRETNEEVAARGLKFMNCMTGSDS--SSTNYPGKIPSA 124 (148)
Q Consensus 89 ~gEs~~~v~~Rv~~fl~~i~~~~~--~vVsHgg~I~~~ 124 (148)
...|.++..+++++.++...+-+. .+.+|||.|.+-
T Consensus 190 ~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p 227 (268)
T PF09370_consen 190 TALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATP 227 (268)
T ss_dssp -S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SH
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCH
Confidence 467999999999999998876543 358999999643
No 42
>PF02500 DNA_pack_N: Probable DNA packing protein, N-terminus ; InterPro: IPR003499 This family includes proteins that are probably involved in DNA packing in Herpesviridae. This domain is normally found at the N terminus of the protein.; GO: 0006323 DNA packaging
Probab=21.69 E-value=47 Score=27.61 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=10.0
Q ss_pred EEEEe--eCCcccccc
Q 038365 12 EKQMV--RHAQGLHNV 25 (148)
Q Consensus 12 ~iyLv--RHGeT~~N~ 25 (148)
++||| |||.|+.=+
T Consensus 191 TVFLVPRRHGKTWfvV 206 (284)
T PF02500_consen 191 TVFLVPRRHGKTWFVV 206 (284)
T ss_pred cEEEeeccCCCcchHH
Confidence 56776 888887754
Done!