Query 038366
Match_columns 169
No_of_seqs 133 out of 1167
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 10:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 4.8E-31 1E-35 170.5 17.8 151 15-166 8-158 (160)
2 KOG0027 Calmodulin and related 100.0 1E-27 2.2E-32 157.6 17.4 145 21-165 2-150 (151)
3 PTZ00183 centrin; Provisional 99.9 1.6E-25 3.6E-30 148.3 19.4 152 16-167 6-157 (158)
4 KOG0028 Ca2+-binding protein ( 99.9 8.2E-26 1.8E-30 143.3 16.5 154 12-165 18-171 (172)
5 PTZ00184 calmodulin; Provision 99.9 4E-24 8.6E-29 140.2 17.9 146 19-164 3-148 (149)
6 KOG0031 Myosin regulatory ligh 99.9 3.5E-23 7.5E-28 130.5 16.0 147 13-163 18-164 (171)
7 KOG0030 Myosin essential light 99.9 3.4E-22 7.4E-27 124.0 13.6 144 20-164 4-151 (152)
8 KOG0034 Ca2+/calmodulin-depend 99.9 3.2E-20 7E-25 124.1 15.9 143 20-166 26-177 (187)
9 KOG0037 Ca2+-binding protein, 99.8 2.7E-19 5.9E-24 119.6 15.5 133 25-164 55-188 (221)
10 KOG0036 Predicted mitochondria 99.8 4.4E-18 9.6E-23 123.2 16.4 143 19-167 6-149 (463)
11 KOG0044 Ca2+ sensor (EF-Hand s 99.8 4.3E-18 9.3E-23 114.1 14.5 146 17-165 19-176 (193)
12 KOG4223 Reticulocalbin, calume 99.6 2.6E-15 5.7E-20 106.0 9.7 138 23-160 159-301 (325)
13 PLN02964 phosphatidylserine de 99.6 1.3E-13 2.9E-18 107.5 14.6 105 19-128 135-243 (644)
14 cd05022 S-100A13 S-100A13: S-1 99.5 1.4E-13 3.1E-18 81.7 7.4 65 100-164 8-75 (89)
15 KOG0037 Ca2+-binding protein, 99.5 9.6E-13 2.1E-17 88.5 9.8 86 26-118 123-208 (221)
16 KOG0027 Calmodulin and related 99.4 3.5E-12 7.5E-17 83.8 11.5 104 62-166 7-115 (151)
17 PF13499 EF-hand_7: EF-hand do 99.4 6.3E-13 1.4E-17 75.1 6.8 61 102-162 2-66 (66)
18 KOG0038 Ca2+-binding kinase in 99.4 2.7E-11 5.8E-16 76.5 13.6 147 16-166 17-179 (189)
19 cd05027 S-100B S-100B: S-100B 99.4 2.1E-12 4.5E-17 76.8 8.2 66 100-165 8-80 (88)
20 KOG0377 Protein serine/threoni 99.4 1.6E-11 3.4E-16 90.5 13.0 135 27-163 464-614 (631)
21 cd05022 S-100A13 S-100A13: S-1 99.4 5.2E-12 1.1E-16 75.0 8.2 70 23-92 4-76 (89)
22 PTZ00183 centrin; Provisional 99.4 3.9E-11 8.4E-16 79.3 12.7 103 62-165 16-119 (158)
23 KOG4223 Reticulocalbin, calume 99.4 1.1E-11 2.4E-16 87.9 10.3 141 24-164 74-228 (325)
24 PF13499 EF-hand_7: EF-hand do 99.3 7.8E-12 1.7E-16 70.6 7.5 62 28-89 1-66 (66)
25 KOG0044 Ca2+ sensor (EF-Hand s 99.3 1.4E-11 3.1E-16 82.9 9.8 106 23-128 60-175 (193)
26 cd05029 S-100A6 S-100A6: S-100 99.3 5.1E-12 1.1E-16 75.1 6.6 67 100-166 10-81 (88)
27 cd05027 S-100B S-100B: S-100B 99.3 2.3E-11 5.1E-16 72.3 9.2 70 23-92 4-80 (88)
28 COG5126 FRQ1 Ca2+-binding prot 99.3 9.5E-11 2.1E-15 76.4 12.2 100 63-164 20-120 (160)
29 cd05031 S-100A10_like S-100A10 99.3 2.1E-11 4.6E-16 73.7 8.0 65 100-164 8-79 (94)
30 smart00027 EH Eps15 homology d 99.3 6.2E-11 1.4E-15 71.9 9.5 71 20-92 3-73 (96)
31 PTZ00184 calmodulin; Provision 99.3 1.8E-10 3.9E-15 75.2 12.3 102 63-165 11-113 (149)
32 cd05025 S-100A1 S-100A1: S-100 99.3 4.8E-11 1E-15 71.8 8.2 65 100-164 9-80 (92)
33 cd05026 S-100Z S-100Z: S-100Z 99.3 5.6E-11 1.2E-15 71.6 8.4 66 100-165 10-82 (93)
34 PF13833 EF-hand_8: EF-hand do 99.3 2.7E-11 5.8E-16 65.6 6.1 52 113-164 1-53 (54)
35 cd00052 EH Eps15 homology doma 99.2 6.3E-11 1.4E-15 67.0 7.1 60 103-164 2-61 (67)
36 cd05029 S-100A6 S-100A6: S-100 99.2 2.5E-10 5.5E-15 67.9 9.0 70 23-92 6-80 (88)
37 smart00027 EH Eps15 homology d 99.2 1.5E-10 3.3E-15 70.2 7.9 64 99-164 9-72 (96)
38 cd05025 S-100A1 S-100A1: S-100 99.2 3E-10 6.4E-15 68.4 9.1 70 23-92 5-81 (92)
39 cd00213 S-100 S-100: S-100 dom 99.2 1.7E-10 3.7E-15 68.9 7.7 67 99-165 7-80 (88)
40 cd05026 S-100Z S-100Z: S-100Z 99.2 3.4E-10 7.4E-15 68.1 8.9 70 23-92 6-82 (93)
41 cd05031 S-100A10_like S-100A10 99.2 3.7E-10 8.1E-15 68.2 8.8 69 24-92 5-80 (94)
42 cd05023 S-100A11 S-100A11: S-1 99.2 3.4E-10 7.4E-15 67.4 8.0 66 100-165 9-81 (89)
43 cd00213 S-100 S-100: S-100 dom 99.2 4.1E-10 8.9E-15 67.2 8.3 70 23-92 4-80 (88)
44 cd00051 EFh EF-hand, calcium b 99.2 3.7E-10 7.9E-15 62.4 7.7 61 102-162 2-62 (63)
45 PLN02964 phosphatidylserine de 99.2 1E-09 2.2E-14 86.1 12.6 120 42-166 119-245 (644)
46 KOG0034 Ca2+/calmodulin-depend 99.1 1.1E-09 2.3E-14 73.8 10.8 111 19-129 49-176 (187)
47 KOG0040 Ca2+-binding actin-bun 99.1 2.2E-09 4.7E-14 89.0 14.5 140 16-163 2242-2397(2399)
48 KOG0028 Ca2+-binding protein ( 99.1 2.2E-09 4.7E-14 69.0 11.1 102 62-164 32-134 (172)
49 cd00252 SPARC_EC SPARC_EC; ext 99.1 6.8E-10 1.5E-14 69.2 7.8 61 99-163 47-107 (116)
50 PF13833 EF-hand_8: EF-hand do 99.1 6.9E-10 1.5E-14 60.0 6.9 52 40-91 1-53 (54)
51 cd00052 EH Eps15 homology doma 99.1 8.4E-10 1.8E-14 62.3 7.4 61 30-92 2-62 (67)
52 KOG0041 Predicted Ca2+-binding 99.1 2.3E-09 4.9E-14 71.4 9.8 117 9-125 81-200 (244)
53 cd05030 calgranulins Calgranul 99.1 6.2E-10 1.3E-14 66.3 5.8 66 100-165 8-80 (88)
54 cd00051 EFh EF-hand, calcium b 99.0 2E-09 4.4E-14 59.3 7.4 61 29-89 2-62 (63)
55 KOG2643 Ca2+ binding protein, 99.0 3.4E-09 7.4E-14 78.2 10.0 135 25-165 316-454 (489)
56 PF14658 EF-hand_9: EF-hand do 99.0 1.7E-09 3.8E-14 59.7 6.4 61 104-164 2-64 (66)
57 KOG0036 Predicted mitochondria 99.0 1.2E-08 2.7E-13 74.8 12.5 129 25-164 49-183 (463)
58 cd05023 S-100A11 S-100A11: S-1 99.0 6.4E-09 1.4E-13 61.9 8.9 70 23-92 5-81 (89)
59 PF14658 EF-hand_9: EF-hand do 99.0 3.7E-09 7.9E-14 58.4 6.8 61 32-92 3-65 (66)
60 KOG4251 Calcium binding protei 99.0 4.3E-09 9.4E-14 72.3 8.3 68 24-91 98-168 (362)
61 cd00252 SPARC_EC SPARC_EC; ext 98.9 9.4E-09 2E-13 64.1 7.1 64 22-89 43-106 (116)
62 KOG2562 Protein phosphatase 2 98.9 7.1E-08 1.5E-12 71.9 11.5 140 17-160 268-420 (493)
63 cd05030 calgranulins Calgranul 98.9 2.9E-08 6.2E-13 59.1 7.8 70 23-92 4-80 (88)
64 KOG2643 Ca2+ binding protein, 98.8 9.9E-08 2.1E-12 70.7 11.5 129 29-163 235-383 (489)
65 KOG0041 Predicted Ca2+-binding 98.7 9.4E-08 2E-12 63.8 8.4 68 100-167 99-166 (244)
66 KOG0751 Mitochondrial aspartat 98.7 3.5E-07 7.6E-12 68.9 11.3 144 19-165 28-176 (694)
67 cd05024 S-100A10 S-100A10: A s 98.7 4.2E-07 9E-12 53.8 8.5 64 100-164 8-76 (91)
68 PF12763 EF-hand_4: Cytoskelet 98.6 2.8E-07 6E-12 56.3 7.1 71 19-92 2-72 (104)
69 KOG1029 Endocytic adaptor prot 98.6 1.7E-06 3.7E-11 68.4 12.2 137 21-162 10-255 (1118)
70 PF00036 EF-hand_1: EF hand; 98.6 1.5E-07 3.3E-12 43.7 3.8 28 28-55 1-28 (29)
71 PF00036 EF-hand_1: EF hand; 98.6 1.4E-07 3E-12 43.9 3.6 28 137-164 1-28 (29)
72 KOG0030 Myosin essential light 98.5 2.9E-06 6.3E-11 53.6 10.3 103 61-164 9-116 (152)
73 KOG4666 Predicted phosphate ac 98.5 1.3E-07 2.8E-12 67.6 4.6 123 38-166 238-361 (412)
74 cd05024 S-100A10 S-100A10: A s 98.5 3E-06 6.4E-11 50.2 9.2 69 23-92 4-77 (91)
75 PF12763 EF-hand_4: Cytoskelet 98.5 9.6E-07 2.1E-11 54.0 7.2 63 98-163 8-70 (104)
76 KOG0031 Myosin regulatory ligh 98.5 1.5E-06 3.3E-11 55.8 7.8 87 40-127 77-164 (171)
77 PRK12309 transaldolase/EF-hand 98.4 3.7E-06 8E-11 63.1 10.6 58 94-164 328-385 (391)
78 PF13405 EF-hand_6: EF-hand do 98.4 5.1E-07 1.1E-11 42.8 3.8 30 28-57 1-31 (31)
79 KOG0751 Mitochondrial aspartat 98.4 2.2E-06 4.8E-11 64.7 8.7 126 29-159 110-239 (694)
80 KOG0038 Ca2+-binding kinase in 98.4 2.5E-06 5.5E-11 54.3 7.6 100 31-130 75-179 (189)
81 KOG0169 Phosphoinositide-speci 98.4 1.1E-05 2.5E-10 63.8 12.7 143 18-165 127-275 (746)
82 PF14788 EF-hand_10: EF hand; 98.4 3.3E-06 7.2E-11 44.1 6.2 50 43-92 1-50 (51)
83 PF13405 EF-hand_6: EF-hand do 98.4 6.3E-07 1.4E-11 42.4 3.1 29 102-130 2-31 (31)
84 PF14788 EF-hand_10: EF hand; 98.3 3.5E-06 7.5E-11 44.0 5.3 48 117-164 2-49 (51)
85 KOG2562 Protein phosphatase 2 98.3 1.1E-05 2.3E-10 60.6 9.5 133 27-163 225-378 (493)
86 KOG0377 Protein serine/threoni 98.1 1.8E-05 3.9E-10 59.2 7.7 62 29-90 549-614 (631)
87 PF10591 SPARC_Ca_bdg: Secrete 98.1 1.7E-06 3.8E-11 53.8 1.7 63 97-161 51-113 (113)
88 PF13202 EF-hand_5: EF hand; P 98.1 7.8E-06 1.7E-10 36.5 3.3 25 29-53 1-25 (25)
89 KOG0046 Ca2+-binding actin-bun 98.0 3.3E-05 7.1E-10 58.9 8.1 75 17-92 9-86 (627)
90 PF13202 EF-hand_5: EF hand; P 98.0 1.3E-05 2.7E-10 35.8 3.2 21 140-160 3-23 (25)
91 PRK12309 transaldolase/EF-hand 97.9 8E-05 1.7E-09 56.1 8.2 59 57-129 328-386 (391)
92 KOG1707 Predicted Ras related/ 97.8 0.00066 1.4E-08 52.9 11.2 143 17-163 185-376 (625)
93 KOG4666 Predicted phosphate ac 97.8 0.00012 2.7E-09 52.8 6.8 102 27-130 259-361 (412)
94 KOG0040 Ca2+-binding actin-bun 97.8 8.5E-05 1.9E-09 63.0 6.7 66 100-165 2253-2325(2399)
95 PF05042 Caleosin: Caleosin re 97.7 0.001 2.2E-08 44.0 9.6 136 26-162 6-164 (174)
96 PF09279 EF-hand_like: Phospho 97.7 0.00019 4.2E-09 42.1 5.7 65 101-166 1-71 (83)
97 PF10591 SPARC_Ca_bdg: Secrete 97.5 4.8E-05 1E-09 47.4 1.6 56 29-86 56-111 (113)
98 KOG0046 Ca2+-binding actin-bun 97.5 0.0006 1.3E-08 52.3 6.9 64 100-164 19-85 (627)
99 KOG4065 Uncharacterized conser 97.4 0.00055 1.2E-08 42.0 5.0 59 103-161 70-142 (144)
100 KOG4251 Calcium binding protei 97.3 0.0002 4.3E-09 49.9 2.4 60 100-159 101-163 (362)
101 smart00054 EFh EF-hand, calciu 97.2 0.00053 1.1E-08 30.7 3.1 27 29-55 2-28 (29)
102 PF09279 EF-hand_like: Phospho 97.2 0.0021 4.5E-08 37.6 6.1 64 28-92 1-70 (83)
103 smart00054 EFh EF-hand, calciu 97.1 0.00083 1.8E-08 30.0 3.1 25 139-163 3-27 (29)
104 KOG0035 Ca2+-binding actin-bun 97.1 0.0099 2.1E-07 48.9 10.6 111 13-124 733-848 (890)
105 KOG1955 Ral-GTPase effector RA 96.7 0.0067 1.5E-07 46.6 6.5 74 17-92 221-294 (737)
106 PLN02952 phosphoinositide phos 96.3 0.079 1.7E-06 42.4 10.4 87 77-164 14-110 (599)
107 KOG1955 Ral-GTPase effector RA 96.2 0.016 3.4E-07 44.7 5.9 63 99-163 230-292 (737)
108 KOG0998 Synaptic vesicle prote 96.1 0.0089 1.9E-07 49.7 4.2 139 19-162 121-343 (847)
109 KOG4578 Uncharacterized conser 96.0 0.0083 1.8E-07 43.7 3.5 65 101-167 334-401 (421)
110 KOG1029 Endocytic adaptor prot 95.9 0.018 4E-07 46.6 5.2 68 22-91 190-257 (1118)
111 PF05517 p25-alpha: p25-alpha 95.8 0.13 2.8E-06 33.9 8.1 63 30-92 2-70 (154)
112 KOG0042 Glycerol-3-phosphate d 95.8 0.049 1.1E-06 42.8 6.8 75 20-94 586-660 (680)
113 KOG2243 Ca2+ release channel ( 95.7 0.022 4.8E-07 49.2 5.1 59 104-163 4061-4119(5019)
114 PF05517 p25-alpha: p25-alpha 95.7 0.084 1.8E-06 34.8 6.9 62 103-164 2-69 (154)
115 KOG3555 Ca2+-binding proteogly 95.6 0.025 5.4E-07 41.6 4.4 62 99-164 249-310 (434)
116 KOG0042 Glycerol-3-phosphate d 95.5 0.035 7.5E-07 43.6 5.1 68 102-169 595-662 (680)
117 KOG0169 Phosphoinositide-speci 95.2 0.27 5.8E-06 40.1 9.4 98 62-164 135-232 (746)
118 KOG1265 Phospholipase C [Lipid 95.2 1 2.2E-05 37.8 12.5 121 38-165 159-300 (1189)
119 KOG4065 Uncharacterized conser 94.3 0.57 1.2E-05 29.1 7.2 21 103-123 120-140 (144)
120 PF09069 EF-hand_3: EF-hand; 94.1 0.68 1.5E-05 27.5 8.0 65 100-167 3-78 (90)
121 KOG3866 DNA-binding protein of 94.1 0.16 3.5E-06 37.0 5.3 66 102-167 246-327 (442)
122 PF08726 EFhand_Ca_insen: Ca2+ 94.0 0.027 5.8E-07 31.7 1.0 55 99-161 5-66 (69)
123 KOG3555 Ca2+-binding proteogly 93.8 0.14 3.1E-06 37.8 4.5 99 27-130 211-312 (434)
124 KOG4347 GTPase-activating prot 93.5 0.72 1.6E-05 37.1 8.2 106 15-122 492-612 (671)
125 PF08976 DUF1880: Domain of un 93.1 0.083 1.8E-06 32.7 2.2 31 133-163 4-34 (118)
126 PLN02952 phosphoinositide phos 92.9 2.1 4.6E-05 34.6 10.2 87 40-127 13-109 (599)
127 PF05042 Caleosin: Caleosin re 92.5 0.98 2.1E-05 30.2 6.6 29 27-55 96-124 (174)
128 KOG1264 Phospholipase C [Lipid 92.5 1.1 2.3E-05 37.4 8.0 145 21-166 137-295 (1267)
129 KOG0998 Synaptic vesicle prote 92.4 0.23 4.9E-06 41.8 4.4 132 27-163 11-189 (847)
130 KOG4578 Uncharacterized conser 91.8 0.16 3.5E-06 37.3 2.6 65 65-129 335-399 (421)
131 KOG4347 GTPase-activating prot 90.8 0.48 1.1E-05 38.0 4.5 57 100-157 555-611 (671)
132 cd07313 terB_like_2 tellurium 90.6 2.4 5.2E-05 25.6 6.7 81 40-122 12-94 (104)
133 KOG1707 Predicted Ras related/ 90.6 1.1 2.4E-05 35.8 6.2 71 16-92 304-378 (625)
134 KOG2243 Ca2+ release channel ( 90.1 0.77 1.7E-05 40.5 5.3 58 32-90 4062-4119(5019)
135 PRK09430 djlA Dna-J like membr 89.8 6 0.00013 28.7 10.8 102 39-145 67-175 (267)
136 KOG0035 Ca2+-binding actin-bun 89.7 1.3 2.9E-05 37.1 6.3 68 99-166 746-818 (890)
137 PF14513 DAG_kinase_N: Diacylg 87.5 2.4 5.1E-05 27.5 5.2 71 40-112 4-81 (138)
138 PLN02222 phosphoinositide phos 87.0 4.9 0.00011 32.5 7.6 63 100-164 25-90 (581)
139 PF05099 TerB: Tellurite resis 86.5 0.87 1.9E-05 29.2 2.9 95 40-138 36-135 (140)
140 KOG3866 DNA-binding protein of 86.0 1.3 2.8E-05 32.5 3.7 61 32-92 249-325 (442)
141 PLN02228 Phosphoinositide phos 86.0 6.7 0.00015 31.7 7.9 30 61-92 22-51 (567)
142 PF07308 DUF1456: Protein of u 85.9 4.3 9.2E-05 22.8 5.1 46 118-163 15-60 (68)
143 PLN02230 phosphoinositide phos 85.9 6.2 0.00013 32.1 7.7 66 98-164 27-102 (598)
144 PF11116 DUF2624: Protein of u 84.7 6.1 0.00013 23.2 6.5 34 115-148 13-46 (85)
145 PF08976 DUF1880: Domain of un 83.5 1.2 2.5E-05 27.8 2.3 33 60-92 4-36 (118)
146 cd07313 terB_like_2 tellurium 83.5 4.5 9.8E-05 24.4 5.0 52 77-128 13-65 (104)
147 PF12174 RST: RCD1-SRO-TAF4 (R 80.6 2.6 5.7E-05 23.8 2.9 47 79-129 8-54 (70)
148 TIGR01639 P_fal_TIGR01639 Plas 80.5 5.7 0.00012 21.7 4.1 33 115-147 8-40 (61)
149 KOG0039 Ferric reductase, NADH 79.9 6.3 0.00014 32.5 5.8 78 80-164 4-89 (646)
150 PTZ00373 60S Acidic ribosomal 79.6 12 0.00027 23.3 5.9 44 102-145 5-48 (112)
151 KOG1265 Phospholipase C [Lipid 79.1 41 0.00089 29.0 11.0 93 67-166 152-251 (1189)
152 PF14513 DAG_kinase_N: Diacylg 79.0 15 0.00032 23.8 6.5 70 76-148 4-81 (138)
153 PF07308 DUF1456: Protein of u 78.5 9.6 0.00021 21.4 5.2 49 44-92 14-62 (68)
154 KOG3449 60S acidic ribosomal p 78.0 14 0.00029 22.8 5.5 44 102-145 3-46 (112)
155 cd07176 terB tellurite resista 77.8 9.5 0.00021 23.1 5.1 79 40-121 15-98 (111)
156 PLN02222 phosphoinositide phos 77.7 15 0.00033 29.9 7.2 63 28-92 26-91 (581)
157 COG4359 Uncharacterized conser 76.8 15 0.00033 25.2 5.9 14 77-90 11-24 (220)
158 PLN02228 Phosphoinositide phos 76.7 20 0.00043 29.1 7.6 63 28-92 25-93 (567)
159 TIGR01848 PHA_reg_PhaR polyhyd 76.5 11 0.00024 23.1 4.8 21 70-90 10-30 (107)
160 PF11116 DUF2624: Protein of u 76.4 13 0.00028 21.8 8.0 68 42-109 13-82 (85)
161 KOG4301 Beta-dystrobrevin [Cyt 76.0 12 0.00026 28.1 5.8 82 13-95 94-177 (434)
162 KOG2871 Uncharacterized conser 75.8 3.7 8.1E-05 31.0 3.2 44 99-142 308-351 (449)
163 cd05833 Ribosomal_P2 Ribosomal 74.4 18 0.00039 22.4 5.9 54 103-161 4-57 (109)
164 PF00404 Dockerin_1: Dockerin 74.4 4.3 9.3E-05 17.0 1.9 16 37-52 1-16 (21)
165 PF08414 NADPH_Ox: Respiratory 74.0 9.4 0.0002 23.1 4.0 62 26-92 29-93 (100)
166 PLN02230 phosphoinositide phos 73.3 28 0.0006 28.5 7.6 65 26-91 28-102 (598)
167 PF01023 S_100: S-100/ICaBP ty 73.1 10 0.00023 19.1 4.0 32 24-55 3-36 (44)
168 PF03979 Sigma70_r1_1: Sigma-7 70.6 5.5 0.00012 23.1 2.6 33 113-147 18-50 (82)
169 KOG2871 Uncharacterized conser 70.1 5.2 0.00011 30.3 2.8 67 26-92 308-375 (449)
170 PF08461 HTH_12: Ribonuclease 69.0 17 0.00037 20.1 4.2 37 113-149 10-46 (66)
171 PLN02223 phosphoinositide phos 67.6 40 0.00087 27.2 7.3 65 99-164 15-92 (537)
172 PF12174 RST: RCD1-SRO-TAF4 (R 67.6 12 0.00025 21.2 3.3 50 42-94 7-56 (70)
173 PF02761 Cbl_N2: CBL proto-onc 67.2 23 0.00051 20.8 5.6 68 60-129 4-71 (85)
174 KOG2301 Voltage-gated Ca2+ cha 67.0 15 0.00033 33.6 5.4 71 20-92 1410-1485(1592)
175 PF07879 PHB_acc_N: PHB/PHA ac 65.9 14 0.0003 20.4 3.2 37 108-144 11-57 (64)
176 PRK00523 hypothetical protein; 65.4 23 0.0005 20.1 4.1 32 41-72 37-68 (72)
177 KOG1954 Endocytosis/signaling 65.2 17 0.00037 28.0 4.6 57 101-160 445-501 (532)
178 PLN00138 large subunit ribosom 65.1 31 0.00068 21.5 5.8 42 104-145 5-46 (113)
179 COG4103 Uncharacterized protei 64.0 38 0.00082 22.1 10.5 102 31-138 34-140 (148)
180 KOG3077 Uncharacterized conser 63.9 53 0.0012 23.8 12.2 68 25-92 62-130 (260)
181 KOG4286 Dystrophin-like protei 63.6 55 0.0012 27.7 7.4 140 24-167 417-583 (966)
182 PF03672 UPF0154: Uncharacteri 63.2 24 0.00052 19.5 4.2 32 114-145 29-60 (64)
183 PF09069 EF-hand_3: EF-hand; 62.6 31 0.00066 20.6 7.3 61 27-90 3-74 (90)
184 KOG3449 60S acidic ribosomal p 59.9 39 0.00084 20.9 6.4 55 31-90 5-59 (112)
185 PF12419 DUF3670: SNF2 Helicas 59.9 26 0.00056 22.7 4.4 50 112-161 79-138 (141)
186 PLN02223 phosphoinositide phos 58.8 67 0.0015 26.0 7.1 63 28-91 17-92 (537)
187 cd04411 Ribosomal_P1_P2_L12p R 58.6 41 0.00088 20.7 6.0 41 117-162 17-57 (105)
188 COG3763 Uncharacterized protei 58.4 32 0.00069 19.4 4.2 33 41-73 36-68 (71)
189 KOG4004 Matricellular protein 58.3 3.5 7.6E-05 28.3 0.2 50 112-163 200-249 (259)
190 PF09336 Vps4_C: Vps4 C termin 55.6 21 0.00045 19.5 2.9 27 116-142 29-55 (62)
191 PRK09430 djlA Dna-J like membr 55.4 57 0.0012 23.7 5.9 9 114-122 69-77 (267)
192 PF06648 DUF1160: Protein of u 54.9 53 0.0011 20.8 6.2 44 99-145 36-80 (122)
193 KOG0506 Glutaminase (contains 54.5 27 0.00059 27.6 4.3 62 103-164 89-158 (622)
194 PF01885 PTS_2-RNA: RNA 2'-pho 54.5 24 0.00052 24.1 3.7 36 110-145 26-61 (186)
195 TIGR02675 tape_meas_nterm tape 53.7 18 0.00039 20.6 2.6 15 114-128 28-42 (75)
196 PRK06402 rpl12p 50S ribosomal 53.0 52 0.0011 20.3 5.9 30 116-145 16-45 (106)
197 PF07499 RuvA_C: RuvA, C-termi 52.7 31 0.00067 17.5 5.3 39 120-162 4-42 (47)
198 cd07316 terB_like_DjlA N-termi 52.2 49 0.0011 19.7 8.8 78 40-121 12-94 (106)
199 PF13623 SurA_N_2: SurA N-term 52.2 64 0.0014 21.1 7.6 41 122-162 95-145 (145)
200 COG4807 Uncharacterized protei 51.4 63 0.0014 20.7 5.4 89 48-145 20-127 (155)
201 KOG4286 Dystrophin-like protei 51.2 84 0.0018 26.7 6.6 97 28-127 471-579 (966)
202 TIGR00135 gatC glutamyl-tRNA(G 50.5 50 0.0011 19.5 4.3 28 117-144 1-28 (93)
203 PF12486 DUF3702: ImpA domain 50.0 32 0.00069 22.6 3.5 32 24-55 66-97 (148)
204 PF07128 DUF1380: Protein of u 50.0 43 0.00094 21.7 4.0 31 117-147 27-57 (139)
205 cd03035 ArsC_Yffb Arsenate Red 49.9 20 0.00042 21.9 2.5 49 115-166 34-85 (105)
206 PF09068 EF-hand_2: EF hand; 48.8 69 0.0015 20.4 7.7 27 102-128 99-125 (127)
207 KOG4403 Cell surface glycoprot 48.7 38 0.00081 26.5 4.2 30 61-90 66-95 (575)
208 PRK10945 gene expression modul 48.6 50 0.0011 18.7 3.8 11 117-127 35-45 (72)
209 COG5069 SAC6 Ca2+-binding acti 48.4 55 0.0012 26.1 5.0 90 21-114 479-568 (612)
210 COG4103 Uncharacterized protei 47.7 63 0.0014 21.1 4.5 49 114-163 42-93 (148)
211 TIGR03573 WbuX N-acetyl sugar 46.8 74 0.0016 24.0 5.6 42 114-161 300-341 (343)
212 PF10437 Lip_prot_lig_C: Bacte 46.6 57 0.0012 18.8 4.6 42 119-162 44-86 (86)
213 PRK00819 RNA 2'-phosphotransfe 46.5 45 0.00098 22.7 4.0 34 111-144 28-61 (179)
214 PF09312 SurA_N: SurA N-termin 45.5 27 0.00059 21.7 2.7 13 42-54 11-23 (118)
215 PF02761 Cbl_N2: CBL proto-onc 45.2 64 0.0014 19.0 6.1 51 41-91 20-70 (85)
216 PRK01844 hypothetical protein; 44.0 61 0.0013 18.4 4.1 32 114-145 36-67 (72)
217 PF02337 Gag_p10: Retroviral G 44.0 70 0.0015 19.1 4.0 10 148-157 69-78 (90)
218 TIGR00624 tag DNA-3-methyladen 43.3 1.1E+02 0.0023 21.0 5.8 106 23-131 49-168 (179)
219 KOG4070 Putative signal transd 42.2 77 0.0017 21.0 4.3 84 27-110 12-108 (180)
220 COG0721 GatC Asp-tRNAAsn/Glu-t 41.0 81 0.0018 19.0 4.1 30 116-145 2-31 (96)
221 PRK00034 gatC aspartyl/glutamy 41.0 77 0.0017 18.7 4.3 28 117-144 3-30 (95)
222 PRK14981 DNA-directed RNA poly 40.7 64 0.0014 20.0 3.7 25 119-143 81-105 (112)
223 COG2036 HHT1 Histones H3 and H 40.4 81 0.0018 18.8 6.7 81 46-131 6-86 (91)
224 PF01885 PTS_2-RNA: RNA 2'-pho 40.2 67 0.0014 22.0 4.1 37 37-73 26-62 (186)
225 PF09107 SelB-wing_3: Elongati 40.1 57 0.0012 17.0 3.0 30 114-148 8-37 (50)
226 PHA02105 hypothetical protein 40.1 62 0.0013 17.4 3.1 47 116-162 4-55 (68)
227 smart00513 SAP Putative DNA-bi 39.7 44 0.00096 15.6 2.6 19 116-134 3-21 (35)
228 KOG0506 Glutaminase (contains 39.6 1.6E+02 0.0035 23.6 6.3 60 32-91 91-158 (622)
229 PF11848 DUF3368: Domain of un 39.3 56 0.0012 16.7 3.9 33 113-145 14-47 (48)
230 PF09494 Slx4: Slx4 endonuclea 39.0 68 0.0015 17.5 3.7 27 117-143 25-55 (64)
231 PF12949 HeH: HeH/LEM domain; 38.6 26 0.00057 16.8 1.4 19 116-134 3-21 (35)
232 PRK10391 oriC-binding nucleoid 38.1 69 0.0015 18.0 3.1 25 121-145 18-43 (71)
233 PF02037 SAP: SAP domain; Int 37.8 47 0.001 15.6 2.3 19 43-61 3-21 (35)
234 cd00076 H4 Histone H4, one of 37.0 90 0.002 18.4 8.3 69 59-132 13-81 (85)
235 COG2058 RPP1A Ribosomal protei 36.8 1E+02 0.0023 19.0 5.5 40 105-145 6-45 (109)
236 COG2818 Tag 3-methyladenine DN 36.7 67 0.0015 22.0 3.6 43 99-141 54-96 (188)
237 PF12987 DUF3871: Domain of un 36.1 1.8E+02 0.0039 21.7 5.8 52 113-164 214-285 (323)
238 cd00086 homeodomain Homeodomai 35.6 68 0.0015 16.5 6.7 46 19-71 5-50 (59)
239 PF13551 HTH_29: Winged helix- 35.3 1E+02 0.0022 18.4 7.0 51 21-71 58-110 (112)
240 PRK14074 rpsF 30S ribosomal pr 34.3 1.5E+02 0.0032 21.4 5.0 72 18-92 11-82 (257)
241 COG5562 Phage envelope protein 33.9 39 0.00085 21.8 2.0 22 143-164 79-100 (137)
242 TIGR03798 ocin_TIGR03798 bacte 33.6 85 0.0018 17.1 3.3 25 117-141 25-49 (64)
243 PF14069 SpoVIF: Stage VI spor 33.5 1E+02 0.0022 17.9 5.7 45 118-163 29-77 (79)
244 PTZ00015 histone H4; Provision 33.4 1.2E+02 0.0025 18.6 8.5 75 53-132 24-98 (102)
245 TIGR03685 L21P_arch 50S riboso 32.8 1.2E+02 0.0026 18.6 5.9 30 116-145 16-45 (105)
246 PF08730 Rad33: Rad33; InterP 32.6 1.6E+02 0.0034 19.9 11.6 40 20-60 7-46 (170)
247 PF09373 PMBR: Pseudomurein-bi 32.6 51 0.0011 15.3 1.9 14 150-163 2-15 (33)
248 cd05832 Ribosomal_L12p Ribosom 32.5 1.2E+02 0.0027 18.7 5.9 31 116-146 16-46 (106)
249 PF06384 ICAT: Beta-catenin-in 32.5 71 0.0015 18.5 2.7 22 121-142 21-42 (78)
250 PRK00819 RNA 2'-phosphotransfe 32.5 1.2E+02 0.0026 20.6 4.3 43 38-83 28-70 (179)
251 KOG4403 Cell surface glycoprot 32.4 93 0.002 24.5 4.1 29 27-55 68-96 (575)
252 PF08671 SinI: Anti-repressor 32.2 49 0.0011 15.2 1.7 11 117-127 17-27 (30)
253 PF08349 DUF1722: Protein of u 32.0 54 0.0012 20.4 2.5 31 132-162 65-95 (117)
254 PF11020 DUF2610: Domain of un 31.9 1.1E+02 0.0024 17.8 3.5 40 125-164 37-77 (82)
255 PF05321 HHA: Haemolysin expre 31.8 45 0.00098 18.0 1.8 28 119-146 9-36 (57)
256 cd08819 CARD_MDA5_2 Caspase ac 31.6 1.2E+02 0.0025 18.1 5.9 60 103-167 22-81 (88)
257 PF02885 Glycos_trans_3N: Glyc 31.4 95 0.0021 16.9 4.4 27 100-129 18-44 (66)
258 TIGR03573 WbuX N-acetyl sugar 31.2 1.6E+02 0.0035 22.2 5.3 65 49-126 276-342 (343)
259 PF01325 Fe_dep_repress: Iron 31.2 92 0.002 16.7 4.7 53 21-82 2-54 (60)
260 PF09820 AAA-ATPase_like: Pred 31.1 61 0.0013 23.7 3.0 37 133-169 225-261 (284)
261 PF06207 DUF1002: Protein of u 30.4 1.4E+02 0.003 21.2 4.5 47 118-164 173-223 (225)
262 PTZ00373 60S Acidic ribosomal 30.3 1.4E+02 0.0031 18.6 6.4 47 36-87 12-58 (112)
263 KOG1954 Endocytosis/signaling 29.9 1.4E+02 0.0031 23.3 4.6 57 29-88 446-502 (532)
264 PF14848 HU-DNA_bdg: DNA-bindi 29.8 1.5E+02 0.0032 18.7 4.4 33 113-145 25-57 (124)
265 cd08313 Death_TNFR1 Death doma 29.8 1.1E+02 0.0024 17.7 3.3 25 117-143 9-33 (80)
266 cd08327 CARD_RAIDD Caspase act 29.6 1.3E+02 0.0029 18.0 4.5 47 113-164 32-78 (94)
267 PF00046 Homeobox: Homeobox do 29.5 90 0.002 16.1 6.6 46 18-70 4-49 (57)
268 PF13608 Potyvirid-P3: Protein 29.3 1.9E+02 0.0042 22.9 5.5 34 23-57 285-318 (445)
269 KOG4422 Uncharacterized conser 29.3 1.6E+02 0.0036 23.4 5.0 43 126-168 141-183 (625)
270 COG2818 Tag 3-methyladenine DN 28.9 61 0.0013 22.2 2.4 48 23-70 51-98 (188)
271 PLN02508 magnesium-protoporphy 28.7 1.6E+02 0.0036 22.3 4.7 81 27-113 41-123 (357)
272 PF02459 Adeno_terminal: Adeno 28.6 1.8E+02 0.0039 23.7 5.1 46 103-148 458-503 (548)
273 PRK13654 magnesium-protoporphy 28.0 1.4E+02 0.003 22.6 4.3 81 27-113 45-127 (355)
274 PRK10026 arsenate reductase; P 27.9 1.8E+02 0.0038 19.0 5.7 49 115-166 37-89 (141)
275 CHL00185 ycf59 magnesium-proto 27.7 1.5E+02 0.0032 22.4 4.4 82 26-113 40-123 (351)
276 KOG1785 Tyrosine kinase negati 27.6 3E+02 0.0066 21.6 6.2 47 112-158 186-232 (563)
277 PF07848 PaaX: PaaX-like prote 27.4 1.2E+02 0.0027 17.0 4.1 46 101-148 5-50 (70)
278 PF12983 DUF3867: Protein of u 27.4 2E+02 0.0044 19.5 6.5 33 116-150 54-90 (186)
279 KOG2301 Voltage-gated Ca2+ cha 26.2 49 0.0011 30.6 2.0 65 99-164 1416-1484(1592)
280 cd08032 LARP_7 La RNA-binding 26.2 90 0.002 18.2 2.5 19 107-125 30-48 (82)
281 KOG1785 Tyrosine kinase negati 25.8 3.3E+02 0.0072 21.4 8.3 80 42-128 189-274 (563)
282 cd01047 ACSF Aerobic Cyclase S 25.8 2E+02 0.0043 21.6 4.6 81 27-113 25-107 (323)
283 PLN00035 histone H4; Provision 25.6 1.7E+02 0.0037 18.0 9.1 78 50-132 20-97 (103)
284 PF12631 GTPase_Cys_C: Catalyt 25.4 95 0.0021 17.4 2.5 45 101-145 24-72 (73)
285 PF11422 IBP39: Initiator bind 25.4 2.3E+02 0.0049 19.4 7.2 66 65-131 21-90 (181)
286 cd03033 ArsC_15kD Arsenate Red 25.3 1.1E+02 0.0024 18.9 3.0 15 116-130 36-50 (113)
287 PF08355 EF_assoc_1: EF hand a 25.2 71 0.0015 18.3 2.0 19 145-163 11-29 (76)
288 PF14771 DUF4476: Domain of un 25.1 1.6E+02 0.0034 17.4 9.4 12 79-90 39-50 (95)
289 PRK06253 O-phosphoseryl-tRNA s 24.9 3.9E+02 0.0084 21.9 8.2 77 17-93 79-156 (529)
290 PF14932 HAUS-augmin3: HAUS au 24.8 2.7E+02 0.0059 20.1 5.7 34 115-148 23-58 (256)
291 TIGR02787 codY_Gpos GTP-sensin 24.7 2.8E+02 0.006 20.1 5.5 48 19-72 175-222 (251)
292 PRK09389 (R)-citramalate synth 24.7 1.8E+02 0.004 23.3 4.7 44 122-165 323-368 (488)
293 PRK10353 3-methyl-adenine DNA 24.6 1.1E+02 0.0023 21.1 3.0 45 99-143 53-97 (187)
294 PF04963 Sigma54_CBD: Sigma-54 24.5 2.4E+02 0.0052 19.3 5.0 89 38-129 45-143 (194)
295 TIGR00470 sepS O-phosphoseryl- 24.1 3.9E+02 0.0086 21.7 8.1 92 17-109 79-173 (533)
296 PF11829 DUF3349: Protein of u 23.7 1.8E+02 0.0039 17.6 6.6 45 100-144 39-84 (96)
297 cd07177 terB_like tellurium re 23.5 1.6E+02 0.0035 17.0 5.6 16 41-56 13-28 (104)
298 COG4535 CorC Putative Mg2+ and 23.5 2.7E+02 0.0058 20.3 4.8 61 77-141 176-239 (293)
299 PF00627 UBA: UBA/TS-N domain; 23.5 64 0.0014 15.2 1.4 20 126-147 9-28 (37)
300 PF13331 DUF4093: Domain of un 23.4 1.7E+02 0.0037 17.2 8.1 76 60-142 7-86 (87)
301 cd05831 Ribosomal_P1 Ribosomal 23.4 1.9E+02 0.0041 17.7 4.6 31 115-145 16-46 (103)
302 KOG2116 Protein involved in pl 23.2 86 0.0019 26.1 2.7 38 112-149 536-574 (738)
303 cd08332 CARD_CASP2 Caspase act 23.2 1.7E+02 0.0037 17.2 4.1 47 114-165 32-78 (90)
304 KOG0039 Ferric reductase, NADH 22.8 3.5E+02 0.0077 22.7 6.1 65 63-128 18-89 (646)
305 PF07492 Trehalase_Ca-bi: Neut 22.7 19 0.00041 16.6 -0.6 17 140-156 3-19 (30)
306 PF04157 EAP30: EAP30/Vps36 fa 22.4 2.8E+02 0.0061 19.4 12.4 49 102-150 99-150 (223)
307 cd01671 CARD Caspase activatio 22.2 1.6E+02 0.0034 16.4 4.4 47 114-165 25-71 (80)
308 PF00690 Cation_ATPase_N: Cati 22.1 1.5E+02 0.0033 16.1 3.3 28 104-131 8-35 (69)
309 cd07894 Adenylation_RNA_ligase 22.0 2.3E+02 0.005 21.6 4.6 22 38-59 136-157 (342)
310 PF03352 Adenine_glyco: Methyl 21.9 95 0.0021 21.2 2.4 46 99-144 48-93 (179)
311 cd04790 HTH_Cfa-like_unk Helix 21.8 2.6E+02 0.0056 18.8 6.1 36 16-55 35-70 (172)
312 TIGR01446 DnaD_dom DnaD and ph 21.6 1.6E+02 0.0034 16.2 4.4 30 115-146 11-43 (73)
313 PRK12821 aspartyl/glutamyl-tRN 21.5 2.4E+02 0.0053 22.5 4.6 35 111-145 383-417 (477)
314 PRK00441 argR arginine repress 21.4 2.5E+02 0.0054 18.4 4.3 40 113-152 15-58 (149)
315 smart00862 Trans_reg_C Transcr 21.1 1.6E+02 0.0035 16.0 3.1 11 130-140 22-32 (78)
316 PF11300 DUF3102: Protein of u 21.1 2.4E+02 0.0052 18.1 6.9 33 43-75 38-72 (130)
317 PF13624 SurA_N_3: SurA N-term 21.1 1.7E+02 0.0036 18.8 3.4 40 123-164 90-132 (154)
318 TIGR02574 stabl_TIGR02574 puta 21.1 1.6E+02 0.0034 16.0 4.2 30 22-51 29-58 (63)
319 PRK09462 fur ferric uptake reg 20.9 2.5E+02 0.0053 18.1 6.5 51 18-72 12-62 (148)
320 PF10281 Ish1: Putative stress 20.9 1.2E+02 0.0026 14.5 4.1 17 118-134 5-21 (38)
321 cd04411 Ribosomal_P1_P2_L12p R 20.8 2.2E+02 0.0047 17.5 7.1 44 44-92 17-60 (105)
322 PHA02335 hypothetical protein 20.7 2.2E+02 0.0048 17.6 4.7 31 77-114 22-52 (118)
323 KOG4169 15-hydroxyprostaglandi 20.6 2.8E+02 0.0062 20.1 4.5 49 104-153 188-237 (261)
324 TIGR02029 AcsF magnesium-proto 20.6 2.1E+02 0.0045 21.6 4.0 81 27-113 35-117 (337)
325 COG1423 ATP-dependent DNA liga 20.6 2.8E+02 0.0061 21.3 4.7 42 35-76 173-225 (382)
326 COG0541 Ffh Signal recognition 20.4 69 0.0015 25.2 1.6 47 115-164 292-338 (451)
327 KOG4301 Beta-dystrobrevin [Cyt 20.3 2.1E+02 0.0046 21.9 4.0 58 105-163 115-172 (434)
328 PF06627 DUF1153: Protein of u 20.2 1.2E+02 0.0027 18.0 2.3 33 114-151 47-79 (90)
329 cd08330 CARD_ASC_NALP1 Caspase 20.1 1.9E+02 0.0042 16.7 4.9 47 113-164 26-72 (82)
330 PF09682 Holin_LLH: Phage holi 20.1 2.2E+02 0.0049 17.4 4.0 32 114-145 65-100 (108)
331 PF13592 HTH_33: Winged helix- 20.1 1.6E+02 0.0035 15.7 3.8 30 116-145 4-34 (60)
332 PF07862 Nif11: Nitrogen fixat 20.0 1.4E+02 0.0031 15.0 5.6 21 118-138 28-48 (49)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=4.8e-31 Score=170.48 Aligned_cols=151 Identities=37% Similarity=0.708 Sum_probs=144.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhc
Q 038366 15 RGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIG 94 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~ 94 (169)
.....+++.+++++|++.|..+|++++|.|+..+|..+++++|..++.+++.+++..++. +.+.|+|.+|+.++.....
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 556678999999999999999999999999999999999999999999999999999998 8999999999999998887
Q ss_pred CcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 95 ERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 95 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
....++++..+|+.||++++|+|+..+++.+++.+|..+++++++.++..++.|++|.|+|++|.+.+...+
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 778889999999999999999999999999999999999999999999999999999999999999887654
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=1e-27 Score=157.60 Aligned_cols=145 Identities=43% Similarity=0.744 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcch--
Q 038366 21 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDS-- 98 (169)
Q Consensus 21 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~-- 98 (169)
++..++..++.+|..+|++++|.|+..++..+++.+|..++..++..++..++.+++|.|++.+|+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 577899999999999999999999999999999999999999999999999999999999999999999876544332
Q ss_pred --HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 99 --KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 99 --~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
.+++..+|+.+|.+++|.||.+||+.+|..+|...+.+++..+++.+|.|+||.|+|.+|++++...
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 4599999999999999999999999999999999999999999999999999999999999998653
No 3
>PTZ00183 centrin; Provisional
Probab=99.95 E-value=1.6e-25 Score=148.29 Aligned_cols=152 Identities=59% Similarity=0.990 Sum_probs=140.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcC
Q 038366 16 GRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGE 95 (169)
Q Consensus 16 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~ 95 (169)
...+.+++.++.++..+|..+|++++|.|+..||..++..+|..++...+..++..++.+++|.|++.+|+.++......
T Consensus 6 ~~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~ 85 (158)
T PTZ00183 6 SERPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGE 85 (158)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcC
Confidence 44567899999999999999999999999999999999999988899999999999999999999999999988765444
Q ss_pred cchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcCC
Q 038366 96 RDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTF 167 (169)
Q Consensus 96 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~~ 167 (169)
....+.+..+|+.+|.+++|.|+.+||..++...|..+++.++..++..++.+++|.|+|++|..++...|.
T Consensus 86 ~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 86 RDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcccC
Confidence 455678999999999999999999999999999999999999999999999999999999999999988764
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8.2e-26 Score=143.32 Aligned_cols=154 Identities=58% Similarity=0.924 Sum_probs=146.3
Q ss_pred cccccCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHH
Q 038366 12 DKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTA 91 (169)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~ 91 (169)
.......+.+++.+.+.++..|..+|++++|.|+..||..+++++|+.+..+++..++..++.++.|.|++++|...+..
T Consensus 18 ~~~~~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 18 AKPASPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred hccCCCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 45556777889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 92 KIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 92 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
.+....+.+++..+|+.+|.+++|.|+..+|+.+.+.+|..++++++..++..+|.+++|.|+-++|...+.+.
T Consensus 98 k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 98 KLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 88877788999999999999999999999999999999999999999999999999999999999999998764
No 5
>PTZ00184 calmodulin; Provisional
Probab=99.93 E-value=4e-24 Score=140.24 Aligned_cols=146 Identities=46% Similarity=0.786 Sum_probs=134.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcch
Q 038366 19 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDS 98 (169)
Q Consensus 19 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 98 (169)
..+++.++..++..|..+|++++|.|+..+|..++..++..++...+..++..++.+++|.|++++|+.++.........
T Consensus 3 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~ 82 (149)
T PTZ00184 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDS 82 (149)
T ss_pred CccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcH
Confidence 35788999999999999999999999999999999999988889999999999999999999999999998765444445
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
.+.+..+|..+|.+++|.|+.++|..++...|..++.+++..++..+|.+++|.|+|.||+.++..
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 577899999999999999999999999999998899999999999999999999999999998763
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.92 E-value=3.5e-23 Score=130.54 Aligned_cols=147 Identities=29% Similarity=0.509 Sum_probs=138.0
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 13 KIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
.-.+....+++.+|+++++.|...|+|+||.|+.++++..+.++|..++++++..++.. ..|.|+|.-|+.++...
T Consensus 18 asSnvFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGek 93 (171)
T KOG0031|consen 18 ASSNVFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEK 93 (171)
T ss_pred ccchHHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHH
Confidence 34455667899999999999999999999999999999999999999999999999965 46789999999999999
Q ss_pred hcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 93 IGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 93 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
+....+++.+..+|..||.+++|.|..+.|+++|...|..+++++++.+++.+-.|..|.|+|..|+..+.
T Consensus 94 L~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 94 LNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred hcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 98888999999999999999999999999999999999999999999999999999999999999999885
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.90 E-value=3.4e-22 Score=124.04 Aligned_cols=144 Identities=24% Similarity=0.517 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccC--CCCcccHHHHHHHHHHhhcC--
Q 038366 20 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKD--GSGAIDLDEFEHMMTAKIGE-- 95 (169)
Q Consensus 20 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~ef~~~~~~~~~~-- 95 (169)
..++++..+++++|..||..+||.|+..+...+|+++|..|+..++.+....+..+ +-.+++|++|+.++......
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 35677889999999999999999999999999999999999999999999988766 45789999999999876543
Q ss_pred cchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 96 RDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 96 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
...-+.+...++.||+.++|+|...||+++|.++|..++++|++.+++-. .|.+|.|+|+.|++-+..
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIMS 151 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHhc
Confidence 33457788999999999999999999999999999999999999999875 478899999999987753
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.87 E-value=3.2e-20 Score=124.15 Aligned_cols=143 Identities=28% Similarity=0.516 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCc-ccHHHHHHHHHHhhcCcc
Q 038366 20 GLSQQKKQEIKEAFELFDTD-GSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGA-IDLDEFEHMMTAKIGERD 97 (169)
Q Consensus 20 ~~~~~~~~~~~~~f~~~D~~-~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-i~~~ef~~~~~~~~~~~~ 97 (169)
.++..++..+...|.+++++ ++|.|+.+||..++ .+...+ -...++..++.+++|. |++++|+..+........
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc
Confidence 38999999999999999999 99999999999998 333333 3456777777777777 999999999998877767
Q ss_pred hHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh-CCCCC--HHH----HHHHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 98 SKEELMKAFHIIDQDNNGKISAGDIKRIAREL-GVNFT--DRE----IHEMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 98 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~~~----~~~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
.++.+..+|+.||.+++|.|+.+|+.+++..+ |...+ ++. ++.++..+|.|+||.|+++||++++.+.|
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 77799999999999999999999999999986 44444 333 56677899999999999999999998875
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=2.7e-19 Score=119.58 Aligned_cols=133 Identities=26% Similarity=0.409 Sum_probs=124.1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHH
Q 038366 25 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALGF-EMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELM 103 (169)
Q Consensus 25 ~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 103 (169)
....+..+|..+|+++.|.|+.+|+.++|..... +.+.+.|..++..+|.+..|+|+++||..++..+ ..++
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr 127 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWR 127 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHH
Confidence 4558899999999999999999999999986544 5889999999999999999999999999999987 7899
Q ss_pred HHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 104 KAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 104 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
.+|+.+|.|++|.|+..||++.|..+|..++++-.+.+++++|.-..|.|.+++|++++-.
T Consensus 128 ~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 128 NVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888999999999999754
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.81 E-value=4.4e-18 Score=123.17 Aligned_cols=143 Identities=22% Similarity=0.435 Sum_probs=133.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcc
Q 038366 19 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE-MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERD 97 (169)
Q Consensus 19 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~ 97 (169)
....++...+++..|..+|.+++|.++..++...+.++..+ +...-...+++.+|.+.+|.++|.+|...+...
T Consensus 6 ~~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~----- 80 (463)
T KOG0036|consen 6 RETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK----- 80 (463)
T ss_pred cCCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh-----
Confidence 45677888899999999999999999999999999999887 778888899999999999999999999999876
Q ss_pred hHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcCC
Q 038366 98 SKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTF 167 (169)
Q Consensus 98 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~~ 167 (169)
+.++..+|..+|.+.+|.|..+|+.+.++.+|.++++++++.+++.+|.++++.|+++||.+.+.-+|.
T Consensus 81 -E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~ 149 (463)
T KOG0036|consen 81 -ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPE 149 (463)
T ss_pred -HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCCh
Confidence 678999999999999999999999999999999999999999999999999999999999999887663
No 11
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.80 E-value=4.3e-18 Score=114.06 Aligned_cols=146 Identities=21% Similarity=0.329 Sum_probs=121.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcC
Q 038366 17 RHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGF-EMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGE 95 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~ 95 (169)
....+++.+++.|.+-|..-+ ++|.|+..+|+.++.+++. .-+......+++.+|.+++|.|++.||+..+......
T Consensus 19 ~~t~f~~~ei~~~Yr~Fk~~c--P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG 96 (193)
T KOG0044|consen 19 QQTKFSKKEIQQWYRGFKNEC--PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG 96 (193)
T ss_pred HhcCCCHHHHHHHHHHhcccC--CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC
Confidence 356788889888888886643 4889999999999999876 4556678889999999999999999999999876544
Q ss_pred cchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh----CC-------CCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 96 RDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL----GV-------NFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 96 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
...+.+..+|+.||.+++|.||++|+-.+++.. |. .-.++-+..+|+.+|.|.||.||++||......
T Consensus 97 -t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 97 -TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred -cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 445888899999999999999999998887764 32 123566889999999999999999999988765
Q ss_pred c
Q 038366 165 T 165 (169)
Q Consensus 165 ~ 165 (169)
.
T Consensus 176 d 176 (193)
T KOG0044|consen 176 D 176 (193)
T ss_pred C
Confidence 4
No 12
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.6e-15 Score=106.01 Aligned_cols=138 Identities=23% Similarity=0.425 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcc----
Q 038366 23 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE-MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERD---- 97 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~---- 97 (169)
...+.+.++.|+..|.|++|.+|..||...|..--.+ +....|.+.+..+|.|++|.|+++||+.-+....+...
T Consensus 159 ~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeW 238 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEW 238 (325)
T ss_pred HHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccc
Confidence 4567788899999999999999999999998776554 56777888999999999999999999998876543211
Q ss_pred hHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHH
Q 038366 98 SKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIR 160 (169)
Q Consensus 98 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~ 160 (169)
...+-..++...|++++|.++.+|+++++...+...+..++..++...|.|+||++|++|-+.
T Consensus 239 v~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 239 VLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 113345778889999999999999999999988888999999999999999999999999764
No 13
>PLN02964 phosphatidylserine decarboxylase
Probab=99.57 E-value=1.3e-13 Score=107.49 Aligned_cols=105 Identities=18% Similarity=0.337 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC-CCCCHHH---HHHHHHhHccCCCCcccHHHHHHHHHHhhc
Q 038366 19 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG-FEMTEEQ---INQMIADVDKDGSGAIDLDEFEHMMTAKIG 94 (169)
Q Consensus 19 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~ 94 (169)
..++..+++++.+.|..+|++++|.+ +..+++++| ..+++.+ +..++..+|.+++|.|+++||+.++... .
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g 209 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-G 209 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-c
Confidence 56788999999999999999999997 888999999 5888887 8999999999999999999999999864 4
Q ss_pred CcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHH
Q 038366 95 ERDSKEELMKAFHIIDQDNNGKISAGDIKRIARE 128 (169)
Q Consensus 95 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 128 (169)
.....+++..+|+.+|++++|.|+.+||.+++..
T Consensus 210 ~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 4456688999999999999999999999999998
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.50 E-value=1.4e-13 Score=81.72 Aligned_cols=65 Identities=18% Similarity=0.388 Sum_probs=61.1
Q ss_pred HHHHHHHhHhcc-CCCCCcCHHHHHHHHHH-hCCCCCH-HHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 100 EELMKAFHIIDQ-DNNGKISAGDIKRIARE-LGVNFTD-REIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 100 ~~~~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
..+..+|..||+ +++|.|+..||+.++.. +|..++. ++++.++..+|.|+||.|+|+||+.++..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 568899999999 99999999999999999 8988888 99999999999999999999999998865
No 15
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.46 E-value=9.6e-13 Score=88.46 Aligned_cols=86 Identities=31% Similarity=0.562 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHH
Q 038366 26 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKA 105 (169)
Q Consensus 26 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 105 (169)
+..|+.+|..+|+|++|.|+..||.++|..+|..++.+-...|+++++..+.|.|.+++|+.++..+ ..+..+
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------~~lt~~ 195 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------QRLTEA 195 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------HHHHHH
Confidence 4566777777777777777777777777777777777777777777766656777777777777665 556677
Q ss_pred HhHhccCCCCCcC
Q 038366 106 FHIIDQDNNGKIS 118 (169)
Q Consensus 106 f~~~D~~~~g~i~ 118 (169)
|+..|.+..|.|+
T Consensus 196 Fr~~D~~q~G~i~ 208 (221)
T KOG0037|consen 196 FRRRDTAQQGSIT 208 (221)
T ss_pred HHHhccccceeEE
Confidence 7777776666654
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.44 E-value=3.5e-12 Score=83.83 Aligned_cols=104 Identities=25% Similarity=0.429 Sum_probs=91.6
Q ss_pred HHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCC-----CHH
Q 038366 62 EEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNF-----TDR 136 (169)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-----~~~ 136 (169)
..++..+|..+|.+++|.|+..++..++... +......++..++..+|.+++|.|+.++|..++...+... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~l-g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSL-GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 4568889999999999999999999999875 5555669999999999999999999999999999876433 345
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 137 EIHEMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 137 ~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
++..+|+.+|.|++|.|++.|+..+|....
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg 115 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLG 115 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhC
Confidence 999999999999999999999999987643
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.44 E-value=6.3e-13 Score=75.14 Aligned_cols=61 Identities=36% Similarity=0.670 Sum_probs=53.8
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHH----HHHHHHHHhccCCCCcccHHHHHHHH
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDR----EIHEMVEEADRDHDGEVNADEFIRMM 162 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~d~~g~i~~~ef~~~l 162 (169)
+..+|+.+|.+++|.|+.+||..++..++...++. .+..+++.+|.|++|.|+++||+.++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999999998766554 45556999999999999999999875
No 18
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.42 E-value=2.7e-11 Score=76.48 Aligned_cols=147 Identities=19% Similarity=0.263 Sum_probs=106.5
Q ss_pred cCCCCCCHHHHHHHHHHHHhhCCC-----------CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHH
Q 038366 16 GRHHGLSQQKKQEIKEAFELFDTD-----------GSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDE 84 (169)
Q Consensus 16 ~~~~~~~~~~~~~~~~~f~~~D~~-----------~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~e 84 (169)
+--.-++..++-++-..|..+.++ ..-.++.+.+..+.. +.-++. -..+...+..+|.|.+++++
T Consensus 17 QDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPE-Lkenpf---k~ri~e~FSeDG~Gnlsfdd 92 (189)
T KOG0038|consen 17 QDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPE-LKENPF---KRRICEVFSEDGRGNLSFDD 92 (189)
T ss_pred cccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChh-hhcChH---HHHHHHHhccCCCCcccHHH
Confidence 334456778888888888776543 122344444433322 222222 23466777789999999999
Q ss_pred HHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh-CCCCCHHHHH----HHHHHhccCCCCcccHHHHH
Q 038366 85 FEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL-GVNFTDREIH----EMVEEADRDHDGEVNADEFI 159 (169)
Q Consensus 85 f~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~----~~~~~~d~d~~g~i~~~ef~ 159 (169)
|+.++..........-....+|+.+|-++++.|...++...+.++ ...++++++. .++..+|.|+||++++.+|-
T Consensus 93 FlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe 172 (189)
T KOG0038|consen 93 FLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE 172 (189)
T ss_pred HHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH
Confidence 999998765444444567789999999999999999999999887 3358888855 45667899999999999999
Q ss_pred HHHHhcC
Q 038366 160 RMMKRTT 166 (169)
Q Consensus 160 ~~l~~~~ 166 (169)
+.+.+.|
T Consensus 173 ~~i~raP 179 (189)
T KOG0038|consen 173 HVILRAP 179 (189)
T ss_pred HHHHhCc
Confidence 9998766
No 19
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.41 E-value=2.1e-12 Score=76.83 Aligned_cols=66 Identities=21% Similarity=0.415 Sum_probs=60.8
Q ss_pred HHHHHHHhHhc-cCCCC-CcCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 100 EELMKAFHIID-QDNNG-KISAGDIKRIARE-----LGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 100 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
..+..+|..+| ++++| .|+.+||+.+|+. +|...++++++.+++.+|.|++|.|+|++|+.++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 56889999998 79999 5999999999999 8888899999999999999999999999999988653
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.39 E-value=1.6e-11 Score=90.48 Aligned_cols=135 Identities=21% Similarity=0.422 Sum_probs=105.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhc-----------
Q 038366 27 QEIKEAFELFDTDGSGTIDAKELNVAMRAL-GFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIG----------- 94 (169)
Q Consensus 27 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~----------- 94 (169)
..+.+-|+.+|+.++|.|+...+..++..+ |+.++...+.--+ ...+.+|.|.|......+.....
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 346677999999999999999999999875 6666644433322 23456788999888776642210
Q ss_pred CcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh----CCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 95 ERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL----GVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 95 ~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
....+..+..+|+.+|.+++|.||.+||++..+-+ +..++++++..+.+.+|-|+||.|+++||++.++
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 11224568889999999999999999999988765 5678999999999999999999999999999875
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.38 E-value=5.2e-12 Score=75.02 Aligned_cols=70 Identities=13% Similarity=0.309 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH-cCCCCCH-HHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 23 QQKKQEIKEAFELFDT-DGSGTIDAKELNVAMRA-LGFEMTE-EQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~-~~~g~l~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+..+..++.+|..||+ +++|.|+..||+.+|.. +|..++. .++..+++.+|.+++|.|+|+||+.++...
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4567889999999999 99999999999999999 8877777 899999999999999999999999998765
No 22
>PTZ00183 centrin; Provisional
Probab=99.36 E-value=3.9e-11 Score=79.25 Aligned_cols=103 Identities=27% Similarity=0.387 Sum_probs=87.3
Q ss_pred HHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh-CCCCCHHHHHH
Q 038366 62 EEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL-GVNFTDREIHE 140 (169)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~ 140 (169)
..++..+|..+|.+++|.|++.+|..++... +.......+..+|..+|.+++|.|+.++|..++... ....+.+.+..
T Consensus 16 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 16 KKEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3456778999999999999999999999754 433455789999999999999999999999887764 34456788999
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhc
Q 038366 141 MVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 141 ~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
+|..+|.+++|.|+..+|..++...
T Consensus 95 ~F~~~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 95 AFRLFDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHHHh
Confidence 9999999999999999999998753
No 23
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.1e-11 Score=87.93 Aligned_cols=141 Identities=18% Similarity=0.316 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhh------cCcc
Q 038366 24 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKI------GERD 97 (169)
Q Consensus 24 ~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~------~~~~ 97 (169)
+...++..++...|.+++|.|+..|+..++..........+...-+..++.+.+|.|+|+++........ ....
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e 153 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEE 153 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccch
Confidence 3566788899999999999999999999988766555667777888889999999999999998876421 0100
Q ss_pred h-------HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhC-CCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 98 S-------KEELMKAFHIIDQDNNGKISAGDIKRIARELG-VNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 98 ~-------~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
. -..-..-|+..|.+++|.+|.+||..+|..-. ..+.+-.+.+-+...|+|+||.|+++||+.-+-.
T Consensus 154 ~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 154 DNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred hcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 0 11234688999999999999999999998753 3466777888999999999999999999976644
No 24
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.35 E-value=7.8e-12 Score=70.62 Aligned_cols=62 Identities=45% Similarity=0.804 Sum_probs=51.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHH----HHHHHHHhHccCCCCcccHHHHHHHH
Q 038366 28 EIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEE----QINQMIADVDKDGSGAIDLDEFEHMM 89 (169)
Q Consensus 28 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~----~~~~l~~~~~~~~~~~i~~~ef~~~~ 89 (169)
+++.+|..+|.+++|.|+.+||..++..++...+.. .+..+++.+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478899999999999999999999999998766544 44455888888888889988888764
No 25
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.34 E-value=1.4e-11 Score=82.86 Aligned_cols=106 Identities=24% Similarity=0.329 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhc--------
Q 038366 23 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIG-------- 94 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~-------- 94 (169)
.+.......+|+.+|.+++|.|++.||..++..+-....++-+.=.|+.||.+++|.|++.|++.++.....
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~ 139 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALP 139 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCC
Confidence 455667788999999999999999999999988877777788888899999999999999999999876542
Q ss_pred --CcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHH
Q 038366 95 --ERDSKEELMKAFHIIDQDNNGKISAGDIKRIARE 128 (169)
Q Consensus 95 --~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 128 (169)
....++....+|..+|.+++|.||.+||.....+
T Consensus 140 ~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 140 EDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 1224577889999999999999999999887764
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.34 E-value=5.1e-12 Score=75.13 Aligned_cols=67 Identities=25% Similarity=0.518 Sum_probs=60.1
Q ss_pred HHHHHHHhHhcc-CC-CCCcCHHHHHHHHHH---hCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 100 EELMKAFHIIDQ-DN-NGKISAGDIKRIARE---LGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 100 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
..+..+|..||. ++ +|.|+.+||++++.. +|..++++++..+++.+|.|++|.|+|+||+.++....
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 457789999998 67 899999999999974 68889999999999999999999999999999987643
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.33 E-value=2.3e-11 Score=72.30 Aligned_cols=70 Identities=19% Similarity=0.405 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-----cCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 23 QQKKQEIKEAFELFD-TDGSG-TIDAKELNVAMRA-----LGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D-~~~~g-~l~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+..+..+.++|..+| ++++| .|+..||+.+|+. +|..++..++..+++.+|.+++|.|+|++|+.++...
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 456788999999998 79999 5999999999999 8888999999999999999999999999999988765
No 28
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.32 E-value=9.5e-11 Score=76.39 Aligned_cols=100 Identities=24% Similarity=0.393 Sum_probs=89.2
Q ss_pred HHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhC-CCCCHHHHHHH
Q 038366 63 EQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELG-VNFTDREIHEM 141 (169)
Q Consensus 63 ~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~ 141 (169)
+++++.|..++.+++|.|++.++..++. .++.......+..+|..+|. +.|.|+..+|..+|...- ..-+.+++...
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a 97 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA 97 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 4566778899999999999999999998 46777788999999999999 999999999999998753 45679999999
Q ss_pred HHHhccCCCCcccHHHHHHHHHh
Q 038366 142 VEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 142 ~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
|+.+|.|++|.|+..++...+..
T Consensus 98 F~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 98 FKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHhCCCCCceecHHHHHHHHHh
Confidence 99999999999999999998864
No 29
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.30 E-value=2.1e-11 Score=73.66 Aligned_cols=65 Identities=23% Similarity=0.488 Sum_probs=58.8
Q ss_pred HHHHHHHhHhcc-CC-CCCcCHHHHHHHHHH-----hCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 100 EELMKAFHIIDQ-DN-NGKISAGDIKRIARE-----LGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 100 ~~~~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
..+..+|..+|. ++ +|.|+.+||+.++.. +|..++++++..++..+|.+++|.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 568899999997 87 799999999999986 466789999999999999999999999999998864
No 30
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=6.2e-11 Score=71.92 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 20 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 20 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
.++++++..+..+|..+|++++|.|+..++..+++..+ ++..++..++..++.+++|.|++++|+.++...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 46889999999999999999999999999999999965 678899999999999999999999999988765
No 31
>PTZ00184 calmodulin; Provisional
Probab=99.28 E-value=1.8e-10 Score=75.20 Aligned_cols=102 Identities=25% Similarity=0.396 Sum_probs=85.4
Q ss_pred HHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHH
Q 038366 63 EQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL-GVNFTDREIHEM 141 (169)
Q Consensus 63 ~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~ 141 (169)
..+...|..+|.+++|.|++.+|..++... +.....+.+..+|..+|.+++|.|+.++|..++... ......+.+..+
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 346668888999999999999999988654 433445789999999999999999999999988765 334566788999
Q ss_pred HHHhccCCCCcccHHHHHHHHHhc
Q 038366 142 VEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 142 ~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
|..+|.+++|.|+.++|..++...
T Consensus 90 F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 90 FKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHhhCCCCCCeEeHHHHHHHHHHH
Confidence 999999999999999999888653
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.27 E-value=4.8e-11 Score=71.83 Aligned_cols=65 Identities=25% Similarity=0.493 Sum_probs=57.9
Q ss_pred HHHHHHHhHhc-cCCCC-CcCHHHHHHHHHH-hCC----CCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 100 EELMKAFHIID-QDNNG-KISAGDIKRIARE-LGV----NFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 100 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~~----~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
+.+..+|..+| .+++| .|+..||+.+|.. +|. .+++++++.++..+|.|++|.|+|++|+.++..
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 67899999997 99999 5999999999986 443 468899999999999999999999999998865
No 33
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.27 E-value=5.6e-11 Score=71.58 Aligned_cols=66 Identities=21% Similarity=0.485 Sum_probs=57.1
Q ss_pred HHHHHHHhHhc-cCCCC-CcCHHHHHHHHHH-h----CCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 100 EELMKAFHIID-QDNNG-KISAGDIKRIARE-L----GVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 100 ~~~~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
..+..+|..|| ++++| .|+.+||+.++.. . +...++.+++.++..+|.|++|.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 56788899999 78998 5999999999977 2 334578899999999999999999999999998653
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.26 E-value=2.7e-11 Score=65.61 Aligned_cols=52 Identities=37% Similarity=0.719 Sum_probs=48.7
Q ss_pred CCCCcCHHHHHHHHHHhCCC-CCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 113 NNGKISAGDIKRIARELGVN-FTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 113 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
++|.|+.++|+.++..+|.. ++++++..++..+|.|++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999999864
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.23 E-value=6.3e-11 Score=66.99 Aligned_cols=60 Identities=25% Similarity=0.452 Sum_probs=55.4
Q ss_pred HHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 103 MKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 103 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
..+|..+|.+++|.|+.+|+..++...| ++.+++..++..++.+++|.|++.+|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 4689999999999999999999999987 58999999999999999999999999998764
No 36
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.21 E-value=2.5e-10 Score=67.86 Aligned_cols=70 Identities=19% Similarity=0.449 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhCC-CC-CCcccHHHHHHHHH---HcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 23 QQKKQEIKEAFELFDT-DG-SGTIDAKELNVAMR---ALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~-~~-~g~l~~~e~~~~l~---~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
++.+..+..+|.+|+. ++ +|.|+..||+.++. .+|..++.+++..+++.+|.+++|.|+|++|+.++..+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4567789999999997 66 89999999999996 36888999999999999999999999999999988765
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.20 E-value=1.5e-10 Score=70.23 Aligned_cols=64 Identities=27% Similarity=0.462 Sum_probs=58.8
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
...+..+|..+|.+++|.|+.+++..++...| ++.+++..++..++.+.+|.|++++|+.++..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 36788999999999999999999999999877 78999999999999999999999999987753
No 38
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.20 E-value=3e-10 Score=68.38 Aligned_cols=70 Identities=19% Similarity=0.474 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-cC----CCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 23 QQKKQEIKEAFELFD-TDGSG-TIDAKELNVAMRA-LG----FEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D-~~~~g-~l~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+..+..++++|..+| ++++| .|+..|++.+|+. +| ..++..++..++..+|.+++|.|+|++|+.++...
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 345678999999997 99999 5999999999986 43 35688999999999999999999999999988765
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.19 E-value=1.7e-10 Score=68.87 Aligned_cols=67 Identities=18% Similarity=0.394 Sum_probs=58.7
Q ss_pred HHHHHHHHhHhcc--CCCCCcCHHHHHHHHHH-hCCC----CCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 99 KEELMKAFHIIDQ--DNNGKISAGDIKRIARE-LGVN----FTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 99 ~~~~~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
.+.+..+|..+|. +++|.|+.++|..++.. +|.. .+.+++..++..++.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3568889999999 89999999999999986 5543 358999999999999999999999999988653
No 40
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.18 E-value=3.4e-10 Score=68.14 Aligned_cols=70 Identities=14% Similarity=0.333 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhC-CCCCC-cccHHHHHHHHHHc-----CCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 23 QQKKQEIKEAFELFD-TDGSG-TIDAKELNVAMRAL-----GFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D-~~~~g-~l~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+..+..+.++|..|| ++++| .|+..||+.++... ....+..++..+++.+|.+++|.|+|+||+.++..+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456778899999999 78998 59999999999773 334578899999999999999999999999998766
No 41
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.17 E-value=3.7e-10 Score=68.21 Aligned_cols=69 Identities=20% Similarity=0.436 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-----cCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 24 QKKQEIKEAFELFDT-DG-SGTIDAKELNVAMRA-----LGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 24 ~~~~~~~~~f~~~D~-~~-~g~l~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
.....+..+|..+|. ++ +|.|+..|+..+|.. ++..++..++..++..++.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 446779999999997 87 699999999999986 5667899999999999999999999999999888654
No 42
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.16 E-value=3.4e-10 Score=67.42 Aligned_cols=66 Identities=17% Similarity=0.333 Sum_probs=56.9
Q ss_pred HHHHHHHhH-hccCCCC-CcCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 100 EELMKAFHI-IDQDNNG-KISAGDIKRIAREL-----GVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 100 ~~~~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
..+..+|.. +|++++| .|+.+||+.++... +...++.+++.++..+|.|+||.|+|+||+.++...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567889998 6787876 99999999999986 345678999999999999999999999999988653
No 43
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.16 E-value=4.1e-10 Score=67.22 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhCC--CCCCcccHHHHHHHHHH-cCCC----CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 23 QQKKQEIKEAFELFDT--DGSGTIDAKELNVAMRA-LGFE----MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~--~~~g~l~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+.++..++.+|..+|+ +++|.|+..++..++.. .|.. ++..++..++..++.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5778889999999999 89999999999999986 4533 458999999999999999999999999988765
No 44
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.16 E-value=3.7e-10 Score=62.41 Aligned_cols=61 Identities=39% Similarity=0.786 Sum_probs=57.3
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 162 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l 162 (169)
+..+|..+|.+++|.|+.+++..++..++...+.+.+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999876
No 45
>PLN02964 phosphatidylserine decarboxylase
Probab=99.15 E-value=1e-09 Score=86.11 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=90.9
Q ss_pred CcccHHHHHHHHHHcCCC---CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhc--CcchHH--HHHHHHhHhccCCC
Q 038366 42 GTIDAKELNVAMRALGFE---MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIG--ERDSKE--ELMKAFHIIDQDNN 114 (169)
Q Consensus 42 g~l~~~e~~~~l~~~~~~---~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~--~~~~~~--~~~~~f~~~D~~~~ 114 (169)
..++.+++......--.. ...+++.+.|..+|.+++|.+ +..++... + .+...+ .+..+|..+|.+++
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrsl-G~~~pte~e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSC-SIEDPVETERSFARRILAIVDYDED 193 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHh-CCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 456666666554331111 234567778999999999987 33334332 3 222222 38899999999999
Q ss_pred CCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 115 GKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 115 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
|.|+.+||..++..++...+++++..+|+.+|.|++|.|+++||..++....
T Consensus 194 G~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 194 GQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred CeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 9999999999999998778999999999999999999999999999988743
No 46
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-09 Score=73.79 Aligned_cols=111 Identities=24% Similarity=0.424 Sum_probs=90.6
Q ss_pred CCCCHHHHHHH---------HHHHHhhCCCCCCc-ccHHHHHHHHHHcCCCCCHH-HHHHHHHhHccCCCCcccHHHHHH
Q 038366 19 HGLSQQKKQEI---------KEAFELFDTDGSGT-IDAKELNVAMRALGFEMTEE-QINQMIADVDKDGSGAIDLDEFEH 87 (169)
Q Consensus 19 ~~~~~~~~~~~---------~~~f~~~D~~~~g~-l~~~e~~~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~i~~~ef~~ 87 (169)
..++.++...+ .++++.++.+++|. |++++|...+.......+.. .+.-.|+.||.+++|.|+.+++..
T Consensus 49 g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~ 128 (187)
T KOG0034|consen 49 GYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQ 128 (187)
T ss_pred CccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence 34455555544 46678888888888 99999999999887765555 888899999999999999999999
Q ss_pred HHHHhhcCcch------HHHHHHHHhHhccCCCCCcCHHHHHHHHHHh
Q 038366 88 MMTAKIGERDS------KEELMKAFHIIDQDNNGKISAGDIKRIAREL 129 (169)
Q Consensus 88 ~~~~~~~~~~~------~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 129 (169)
++....+.... ...+...|..+|.+++|.|+.+|+..++...
T Consensus 129 iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 129 ILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 99887653222 3456778999999999999999999998864
No 47
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.15 E-value=2.2e-09 Score=88.96 Aligned_cols=140 Identities=19% Similarity=0.415 Sum_probs=114.8
Q ss_pred cCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHhHccCCCCcccHHHHHHH
Q 038366 16 GRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM-------TEEQINQMIADVDKDGSGAIDLDEFEHM 88 (169)
Q Consensus 16 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~-------~~~~~~~l~~~~~~~~~~~i~~~ef~~~ 88 (169)
..++.++++++.++..+|..||++.+|.++..+|..+|+++|+.+ ++.+++.++..+|++.+|.|+..+|+.+
T Consensus 2242 rn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~af 2321 (2399)
T KOG0040|consen 2242 RNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAF 2321 (2399)
T ss_pred hccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHH
Confidence 356789999999999999999999999999999999999999975 2447999999999999999999999999
Q ss_pred HHHhh-cCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhc----c----CCCCcccHHHHH
Q 038366 89 MTAKI-GERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEAD----R----DHDGEVNADEFI 159 (169)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d----~----d~~g~i~~~ef~ 159 (169)
|...- ......+.+..+|+.+|. +..+|+.+++.+. +|+++++.++..+. + ...+.++|.+|+
T Consensus 2322 mi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv 2393 (2399)
T KOG0040|consen 2322 MISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFV 2393 (2399)
T ss_pred HHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHH
Confidence 97653 233445799999999998 8889999886542 57777776665553 2 223568999999
Q ss_pred HHHH
Q 038366 160 RMMK 163 (169)
Q Consensus 160 ~~l~ 163 (169)
+.+-
T Consensus 2394 ~sl~ 2397 (2399)
T KOG0040|consen 2394 NSLF 2397 (2399)
T ss_pred HHHh
Confidence 8764
No 48
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=2.2e-09 Score=69.00 Aligned_cols=102 Identities=29% Similarity=0.480 Sum_probs=89.3
Q ss_pred HHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHH-hCCCCCHHHHHH
Q 038366 62 EEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARE-LGVNFTDREIHE 140 (169)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~ 140 (169)
..+++..|..++.++.|.|++.++..++.. ++.....+++..+..-+|+++.|.|+.++|..++.. ++..-|.+++..
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmra-lGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~ 110 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRA-LGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKK 110 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHH-cCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHH
Confidence 366888999999999999999999777766 466666788889999999999999999999999775 566669999999
Q ss_pred HHHHhccCCCCcccHHHHHHHHHh
Q 038366 141 MVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 141 ~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
.|+.+|.|.+|.|++.+|+.+...
T Consensus 111 afrl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 111 AFRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred HHHcccccCCCCcCHHHHHHHHHH
Confidence 999999999999999999987654
No 49
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.10 E-value=6.8e-10 Score=69.18 Aligned_cols=61 Identities=26% Similarity=0.419 Sum_probs=54.7
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
...+..+|..+|.+++|.|+.+||..+. ++ ..+..+..++..+|.|+||.||++||+.++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~--~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--LD--PNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc--chHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 4678999999999999999999999877 22 5677889999999999999999999999984
No 50
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.10 E-value=6.9e-10 Score=60.00 Aligned_cols=52 Identities=35% Similarity=0.679 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhHccCCCCcccHHHHHHHHHH
Q 038366 40 GSGTIDAKELNVAMRALGFE-MTEEQINQMIADVDKDGSGAIDLDEFEHMMTA 91 (169)
Q Consensus 40 ~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~ 91 (169)
++|.|+.++|..+|..+|.. ++.+++..++..+|.+++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999998864
No 51
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.10 E-value=8.4e-10 Score=62.29 Aligned_cols=61 Identities=26% Similarity=0.412 Sum_probs=55.5
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 30 KEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 30 ~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+.+|..+|++++|.|+..|+..++...|. +..++..++..++.+++|.|++++|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999999874 78889999999999999999999999988654
No 52
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.08 E-value=2.3e-09 Score=71.40 Aligned_cols=117 Identities=21% Similarity=0.327 Sum_probs=94.6
Q ss_pred ccccccccCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHH
Q 038366 9 SRKDKIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHM 88 (169)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~ 88 (169)
.+...++...+.++..+|..+..+|..||.+.||+|+..|++.+|..+|.+.|..-++.++..++.+.+|+|+|.+|+-+
T Consensus 81 ~kv~n~yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 81 LKVFNVYTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34446667778899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhcCcc-hHHHHHHHHhH--hccCCCCCcCHHHHHHH
Q 038366 89 MTAKIGERD-SKEELMKAFHI--IDQDNNGKISAGDIKRI 125 (169)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~f~~--~D~~~~g~i~~~e~~~~ 125 (169)
+........ .+..+..+=+. .|+.+-|......|-+.
T Consensus 161 frkaaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 161 FRKAAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred HHHHhccccccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 876543221 12333333333 68888888887776554
No 53
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.05 E-value=6.2e-10 Score=66.32 Aligned_cols=66 Identities=20% Similarity=0.458 Sum_probs=57.0
Q ss_pred HHHHHHHhHhccC--CCCCcCHHHHHHHHH-HhCCCCC----HHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 100 EELMKAFHIIDQD--NNGKISAGDIKRIAR-ELGVNFT----DREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 100 ~~~~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
..+...|..++.. ++|.|+.+||+.++. .+|..++ ++++..++..+|.+++|.|+|++|+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4577889988866 479999999999997 5566566 8999999999999999999999999998754
No 54
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.04 E-value=2e-09 Score=59.33 Aligned_cols=61 Identities=54% Similarity=0.960 Sum_probs=56.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHH
Q 038366 29 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMM 89 (169)
Q Consensus 29 ~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~ 89 (169)
+..+|..+|.+++|.|+..++..++..++...+...+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998764
No 55
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.03 E-value=3.4e-09 Score=78.18 Aligned_cols=135 Identities=21% Similarity=0.340 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHH
Q 038366 25 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE---MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEE 101 (169)
Q Consensus 25 ~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~---~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~ 101 (169)
+.+.++.-|..+|+..+|.|+..+|..+|-..... --...++++.+.++.. +..|+++||..++..... -..
T Consensus 316 q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~----l~d 390 (489)
T KOG2643|consen 316 QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNN----LND 390 (489)
T ss_pred HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhh----hhH
Confidence 44556666999999988999999999987665432 1233566677777655 456999999998876632 244
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHHH-hCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIARE-LGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
+..+...|- ...+.|+..+|+.+... .|..+++..++.+|..||.|+||.|++.||+..+.+.
T Consensus 391 fd~Al~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 391 FDIALRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 555555553 33478999999988776 4889999999999999999999999999999998763
No 56
>PF14658 EF-hand_9: EF-hand domain
Probab=99.02 E-value=1.7e-09 Score=59.67 Aligned_cols=61 Identities=25% Similarity=0.516 Sum_probs=57.2
Q ss_pred HHHhHhccCCCCCcCHHHHHHHHHHhCC-CCCHHHHHHHHHHhccCCC-CcccHHHHHHHHHh
Q 038366 104 KAFHIIDQDNNGKISAGDIKRIARELGV-NFTDREIHEMVEEADRDHD-GEVNADEFIRMMKR 164 (169)
Q Consensus 104 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~d~~-g~i~~~ef~~~l~~ 164 (169)
.+|..+|.++.|.|...++..+|+..+. .+++++++.+...+|.++. |.|+++.|+..|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999987 8899999999999999987 99999999999875
No 57
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.02 E-value=1.2e-08 Score=74.84 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHH
Q 038366 25 KKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMK 104 (169)
Q Consensus 25 ~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 104 (169)
.-+....+|...|.|.+|.++.+||++.+.. .+.++.++|..+|.+.+|.|+..|.-..+... ...-..+....
T Consensus 49 ~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-gi~l~de~~~k 122 (463)
T KOG0036|consen 49 NYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-GIQLSDEKAAK 122 (463)
T ss_pred chHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-CCccCHHHHHH
Confidence 3456788999999999999999999999986 78889999999999999999999999999874 55556688889
Q ss_pred HHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh------ccCCCCcccHHHHHHHHHh
Q 038366 105 AFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA------DRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 105 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~------d~d~~g~i~~~ef~~~l~~ 164 (169)
+|+..|+++++.|+.+|++..+.-.. ++.++.++..+ |...+..|+ ++|....+.
T Consensus 123 ~~e~~d~~g~~~I~~~e~rd~~ll~p----~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e~~ 183 (463)
T KOG0036|consen 123 FFEHMDKDGKATIDLEEWRDHLLLYP----ESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLEND 183 (463)
T ss_pred HHHHhccCCCeeeccHHHHhhhhcCC----hhHHHHHHHhhhhheEEEccccccCC-cchHHHHhc
Confidence 99999999999999999999887543 55666665443 556677777 776665543
No 58
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.01 E-value=6.4e-09 Score=61.95 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHh-hCCCCCC-cccHHHHHHHHHHcC-----CCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 23 QQKKQEIKEAFEL-FDTDGSG-TIDAKELNVAMRALG-----FEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 23 ~~~~~~~~~~f~~-~D~~~~g-~l~~~e~~~~l~~~~-----~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+..+..|..+|.. +|++++| .|+..||+.++.... ......++..+++.+|.+++|.|+|+||+.++..+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4667889999999 6787875 999999999998863 34567899999999999999999999999988765
No 59
>PF14658 EF-hand_9: EF-hand domain
Probab=98.99 E-value=3.7e-09 Score=58.39 Aligned_cols=61 Identities=28% Similarity=0.548 Sum_probs=57.7
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCC-CCCHHHHHHHHHhHccCCC-CcccHHHHHHHHHHh
Q 038366 32 AFELFDTDGSGTIDAKELNVAMRALGF-EMTEEQINQMIADVDKDGS-GAIDLDEFEHMMTAK 92 (169)
Q Consensus 32 ~f~~~D~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~-~~i~~~ef~~~~~~~ 92 (169)
.|..+|.++.|.+...++..+|++++. .+++.++..+...+|.++. |.|+++.|+.+|..+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 689999999999999999999999999 8999999999999999987 999999999998764
No 60
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.98 E-value=4.3e-09 Score=72.34 Aligned_cols=68 Identities=24% Similarity=0.373 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC---CCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHH
Q 038366 24 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG---FEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTA 91 (169)
Q Consensus 24 ~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~---~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~ 91 (169)
.-.+.+..+|.+.|.|.+|.|+..|+++++..-. +.-+..+.+.-|+..|.+++|.|+|++|...+..
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 4566789999999999999999999999875521 1123334455678889999999999999876653
No 61
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.90 E-value=9.4e-09 Score=64.08 Aligned_cols=64 Identities=23% Similarity=0.317 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHH
Q 038366 22 SQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMM 89 (169)
Q Consensus 22 ~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~ 89 (169)
.+.....+.-.|..+|.|++|.|+.+|+..+. .......+..++..+|.+++|.|+++||...+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45677778888888888888888888888765 34556677778888888888888888888877
No 62
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.85 E-value=7.1e-08 Score=71.88 Aligned_cols=140 Identities=18% Similarity=0.321 Sum_probs=105.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhH----ccCCCCcccHHHHHHHHHHh
Q 038366 17 RHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADV----DKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~----~~~~~~~i~~~ef~~~~~~~ 92 (169)
....++-+.-..+.-.|-.+|.+.+|.|+.++++..-.. ..+..-+.++|..+ -...+|+++|++|+.++.+.
T Consensus 268 ~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 268 VTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred hhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 334556666666666688899999999999998876533 24677788899832 23458999999999999886
Q ss_pred hcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHH-------hCC-CCC-HHHHHHHHHHhccCCCCcccHHHHHH
Q 038366 93 IGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARE-------LGV-NFT-DREIHEMVEEADRDHDGEVNADEFIR 160 (169)
Q Consensus 93 ~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~-------~~~-~~~-~~~~~~~~~~~d~d~~g~i~~~ef~~ 160 (169)
. .+.....+...|+.+|.+++|.|+..|++-++.. .|. .++ +..+..++.-+.....++|+.++|..
T Consensus 345 e-~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 345 E-DKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred c-cCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 4 3444478999999999999999999998776553 232 233 45567777777777789999999987
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.85 E-value=2.9e-08 Score=59.13 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhCCC--CCCcccHHHHHHHHH-HcCCCCC----HHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 23 QQKKQEIKEAFELFDTD--GSGTIDAKELNVAMR-ALGFEMT----EEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~~--~~g~l~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+..+..+..+|..|+.. .+|.|+..||+.+|. .++..++ ..++..++..+|.+++|.|+|++|+.++...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677889999999865 479999999999997 4555555 8999999999999999999999999988765
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.83 E-value=9.9e-08 Score=70.67 Aligned_cols=129 Identities=25% Similarity=0.431 Sum_probs=94.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHc------CC----CCC-----HHHHH--HHHHhHccCCCCcccHHHHHHHHHH
Q 038366 29 IKEAFELFDTDGSGTIDAKELNVAMRAL------GF----EMT-----EEQIN--QMIADVDKDGSGAIDLDEFEHMMTA 91 (169)
Q Consensus 29 ~~~~f~~~D~~~~g~l~~~e~~~~l~~~------~~----~~~-----~~~~~--~l~~~~~~~~~~~i~~~ef~~~~~~ 91 (169)
++-.|..+|.|++|.|+.+||..+...+ |. .++ ..++. .+...++.++++++++++|+.++..
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 4456888999999999999999986443 11 011 11111 2455568999999999999999988
Q ss_pred hhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCC-CCCH--HHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 92 KIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGV-NFTD--REIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 92 ~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~--~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
+ ..+.+..-|..+|+..+|.|+..+|..++..+.. +... ..+..+.+.+..+ +..|+++||..+..
T Consensus 315 L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~ 383 (489)
T KOG2643|consen 315 L-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFR 383 (489)
T ss_pred H-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHH
Confidence 7 3477888999999999999999999999888642 2211 2355666676655 56799999888753
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.75 E-value=9.4e-08 Score=63.83 Aligned_cols=68 Identities=26% Similarity=0.512 Sum_probs=62.2
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcCC
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTF 167 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~~ 167 (169)
..+...|+.||.+.||+|+..||+.+|..+|.+-|---+..++...|.|.+|+|++.+|+-++++...
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 66888999999999999999999999999998777778999999999999999999999998876543
No 66
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.71 E-value=3.5e-07 Score=68.91 Aligned_cols=144 Identities=13% Similarity=0.191 Sum_probs=102.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH-HcCCC-CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCc
Q 038366 19 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMR-ALGFE-MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGER 96 (169)
Q Consensus 19 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~-~~~~~-~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~ 96 (169)
+.-.++++..+-.-+...+.++...++.++|..-.. ..+.. .+..-+..+-...|..+||.|+|+||+.+=..+ .
T Consensus 28 kra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~l---C 104 (694)
T KOG0751|consen 28 KRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVL---C 104 (694)
T ss_pred ccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhc---c
Confidence 344566666666666777889999999999998643 33444 445555555666688899999999999865443 2
Q ss_pred chHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCC---CCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 97 DSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVN---FTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 97 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
.++.....+|..||..++|.+|.+++..++...... +-..+-+.+-..|..+....++|.+|.+++.+.
T Consensus 105 ~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~ 176 (694)
T KOG0751|consen 105 APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEF 176 (694)
T ss_pred CchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHH
Confidence 345778899999999999999999999999876421 112222333335555667778888888887653
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.66 E-value=4.2e-07 Score=53.81 Aligned_cols=64 Identities=16% Similarity=0.365 Sum_probs=53.4
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHHHh-----CCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIAREL-----GVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
..+..+|..|. .+++.++..||+.+++.- +..-.+..++.++...|.|+||.|+|.||+.++..
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45778888887 456799999999999762 33446888999999999999999999999998864
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.62 E-value=2.8e-07 Score=56.34 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 19 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 19 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+.+++++.+.+..+|...++ .+|.|+-.+...++...+ ++...+..||...|.+++|.++++||+-++...
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 45788999999999999986 589999999999998866 556899999999999999999999999988754
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.7e-06 Score=68.40 Aligned_cols=137 Identities=23% Similarity=0.364 Sum_probs=114.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcC-----
Q 038366 21 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGE----- 95 (169)
Q Consensus 21 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~----- 95 (169)
++..+...-...|..+.+ +.|+||-..-++++...|++ ...+..||..-|.++||+++..||.-+|......
T Consensus 10 vT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS~LP--~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQSGLP--TPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred cchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhcCCC--hHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCc
Confidence 577888888888888755 68999999999998877755 4578899999999999999999999887643211
Q ss_pred --------------------------------------------------------------------------------
Q 038366 96 -------------------------------------------------------------------------------- 95 (169)
Q Consensus 96 -------------------------------------------------------------------------------- 95 (169)
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred ------------------------cchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCC
Q 038366 96 ------------------------RDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDG 151 (169)
Q Consensus 96 ------------------------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g 151 (169)
...+-.++.+|..+|+..+|++|...-+.+|...+ ++...+..|+..-|.|+||
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDG 244 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCC
Confidence 01123477899999999999999999999999888 8888999999999999999
Q ss_pred cccHHHHHHHH
Q 038366 152 EVNADEFIRMM 162 (169)
Q Consensus 152 ~i~~~ef~~~l 162 (169)
+++.+||+-.+
T Consensus 245 kL~~dEfilam 255 (1118)
T KOG1029|consen 245 KLSADEFILAM 255 (1118)
T ss_pred cccHHHHHHHH
Confidence 99999998654
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.56 E-value=1.5e-07 Score=43.73 Aligned_cols=28 Identities=50% Similarity=0.815 Sum_probs=22.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 038366 28 EIKEAFELFDTDGSGTIDAKELNVAMRA 55 (169)
Q Consensus 28 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~ 55 (169)
+++.+|+.+|+|++|.|+.+||..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3677888888888888888888888765
No 71
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.55 E-value=1.4e-07 Score=43.87 Aligned_cols=28 Identities=43% Similarity=0.762 Sum_probs=19.3
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 137 EIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 137 ~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
|++.+|+.+|.|+||.|+++||+.++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4566777777777777777777776653
No 72
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.54 E-value=2.9e-06 Score=53.57 Aligned_cols=103 Identities=15% Similarity=0.269 Sum_probs=86.4
Q ss_pred CHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccC--CCCCcCHHHHHHHHHHhC---CCCCH
Q 038366 61 TEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQD--NNGKISAGDIKRIARELG---VNFTD 135 (169)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~e~~~~l~~~~---~~~~~ 135 (169)
...+++++|..+|..++++|++.+--..++. ++..+...++......++++ +-..|+.++|--+++.++ .+.+-
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa-lG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ 87 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRA-LGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTY 87 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHH-hcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcH
Confidence 3478999999999999999999999988877 46666668888888887666 446799999988888774 45688
Q ss_pred HHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 136 REIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 136 ~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
+++-+-++.||++++|.|.+.|+.+.|-.
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHH
Confidence 88999999999999999999999998854
No 73
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.53 E-value=1.3e-07 Score=67.64 Aligned_cols=123 Identities=14% Similarity=0.188 Sum_probs=98.7
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCc
Q 038366 38 TDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKI 117 (169)
Q Consensus 38 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 117 (169)
..+.+.|...||...++- +. ...+..+|..++.+++|.++|.+....+..+.+.......+..+|+.|+.+.||.+
T Consensus 238 ~~kg~~igi~efa~~l~v---pv-sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ 313 (412)
T KOG4666|consen 238 EAKGPDIGIVEFAVNLRV---PV-SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGIS 313 (412)
T ss_pred hccCCCcceeEeeeeeec---ch-hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhccccccccc
Confidence 345566666666555442 22 24567789999999999999999999888777777777899999999999999999
Q ss_pred CHHHHHHHHHHh-CCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 118 SAGDIKRIAREL-GVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 118 ~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
+..+|..+++.. | +..-.+--+|..++...+|+|+|.+|.++....+
T Consensus 314 ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 314 GEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred chHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 999999999875 5 4555566788888888999999999999987665
No 74
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.51 E-value=3e-06 Score=50.22 Aligned_cols=69 Identities=12% Similarity=0.266 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHc-----CCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 23 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRAL-----GFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+..+..+..+|..|-. ..+.|+..||+.+|..- ........+..++..+|.++||.|+|.||+.++..+
T Consensus 4 E~ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 4 EHSMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3557778899999974 46799999999998653 223467789999999999999999999999998766
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.49 E-value=9.6e-07 Score=53.98 Aligned_cols=63 Identities=25% Similarity=0.443 Sum_probs=55.8
Q ss_pred hHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 98 SKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 98 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
....+..+|..++. ++|.|+.++.+.++...| ++.+.+..|+...|.|++|.++.+||+-.+.
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 45778899999985 689999999999999988 8999999999999999999999999987653
No 76
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.47 E-value=1.5e-06 Score=55.79 Aligned_cols=87 Identities=23% Similarity=0.317 Sum_probs=52.7
Q ss_pred CCCcccHHHHHHHHHHc-CCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcC
Q 038366 40 GSGTIDAKELNVAMRAL-GFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKIS 118 (169)
Q Consensus 40 ~~g~l~~~e~~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~ 118 (169)
..|.|++--|..++..- ...-+++.|...|..+|.++.|.|.-+.+..++.. .+..-..+++..+|+.+-.+..|.++
T Consensus 77 a~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt-~gDr~~~eEV~~m~r~~p~d~~G~~d 155 (171)
T KOG0031|consen 77 APGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTT-MGDRFTDEEVDEMYREAPIDKKGNFD 155 (171)
T ss_pred CCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHH-hcccCCHHHHHHHHHhCCcccCCcee
Confidence 45666666666665432 22223555666666666666666666666666654 45555556666666666666666666
Q ss_pred HHHHHHHHH
Q 038366 119 AGDIKRIAR 127 (169)
Q Consensus 119 ~~e~~~~l~ 127 (169)
+..|..++.
T Consensus 156 y~~~~~~it 164 (171)
T KOG0031|consen 156 YKAFTYIIT 164 (171)
T ss_pred HHHHHHHHH
Confidence 666666665
No 77
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.45 E-value=3.7e-06 Score=63.15 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=50.4
Q ss_pred cCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 94 GERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 94 ~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
+.......+..+|+.+|.+++|.|+.+||.. ++.+|..+|.|+||.|+++||...+..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4455567899999999999999999999842 578999999999999999999998764
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.43 E-value=5.1e-07 Score=42.76 Aligned_cols=30 Identities=50% Similarity=0.943 Sum_probs=26.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HcC
Q 038366 28 EIKEAFELFDTDGSGTIDAKELNVAMR-ALG 57 (169)
Q Consensus 28 ~~~~~f~~~D~~~~g~l~~~e~~~~l~-~~~ 57 (169)
+++.+|..+|++++|.|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 79
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.41 E-value=2.2e-06 Score=64.74 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHH
Q 038366 29 IKEAFELFDTDGSGTIDAKELNVAMRALGFE---MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKA 105 (169)
Q Consensus 29 ~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~---~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 105 (169)
.+.+|..+|+.++|.++.+++..++....+. +-..+..-+-..++......++|.+|.+++.... .+.-.++
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~-----~E~~~qa 184 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ-----LEHAEQA 184 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH-----HHHHHHH
Confidence 3455666666666666666666666655332 1111222222233334445566666666665541 2446789
Q ss_pred HhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh-ccCCCCcccHHHHH
Q 038366 106 FHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA-DRDHDGEVNADEFI 159 (169)
Q Consensus 106 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~-d~d~~g~i~~~ef~ 159 (169)
|+..|+.++|.||.-+|+.++......+...-++..+-.. ..+...++++..|.
T Consensus 185 fr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 185 FREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 9999999999999999999999886666555566555544 33344456665543
No 80
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.41 E-value=2.5e-06 Score=54.29 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=78.0
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHH----H
Q 038366 31 EAFELFDTDGSGTIDAKELNVAMRALGFE-MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMK----A 105 (169)
Q Consensus 31 ~~f~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~----~ 105 (169)
+++..+-.++.|.++.++|..++..+.-. +....+...|+.+|-++++.|--.+....+..........++... +
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKV 154 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 45667778999999999999998775443 344456667888999999999999998888877655555555544 4
Q ss_pred HhHhccCCCCCcCHHHHHHHHHHhC
Q 038366 106 FHIIDQDNNGKISAGDIKRIARELG 130 (169)
Q Consensus 106 f~~~D~~~~g~i~~~e~~~~l~~~~ 130 (169)
....|.+++|.++..||.+++.+..
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhCc
Confidence 4556999999999999999988754
No 81
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.40 E-value=1.1e-05 Score=63.85 Aligned_cols=143 Identities=17% Similarity=0.277 Sum_probs=119.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcc
Q 038366 18 HHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERD 97 (169)
Q Consensus 18 ~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~ 97 (169)
...+.......+..+|...|++++|.++..+...++..+...+....+..+++..+..+.+++...+|..+.......
T Consensus 127 ~~~~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-- 204 (746)
T KOG0169|consen 127 SMRQRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-- 204 (746)
T ss_pred hhhhcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC--
Confidence 345667778889999999999999999999999999999999999999999999999999999999999988765322
Q ss_pred hHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhC--CCCCHHHHHHHHHHhccC----CCCcccHHHHHHHHHhc
Q 038366 98 SKEELMKAFHIIDQDNNGKISAGDIKRIARELG--VNFTDREIHEMVEEADRD----HDGEVNADEFIRMMKRT 165 (169)
Q Consensus 98 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~d----~~g~i~~~ef~~~l~~~ 165 (169)
.++..+|..+..+ .+.++.++|..+++..+ ...+.+.++.+++.+... ..+.++.+.|..+|...
T Consensus 205 --pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 205 --PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred --chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 2678888887544 89999999999999874 357888899999877443 44669999999998653
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.37 E-value=3.3e-06 Score=44.09 Aligned_cols=50 Identities=26% Similarity=0.468 Sum_probs=41.3
Q ss_pred cccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 43 TIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 43 ~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+|+++|++.+|+.+++.+++..+..+|+.+|.+++|.++-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999988654
No 83
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.35 E-value=6.3e-07 Score=42.44 Aligned_cols=29 Identities=38% Similarity=0.702 Sum_probs=21.4
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHH-HhC
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIAR-ELG 130 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 130 (169)
+..+|+.+|.+++|.|+.+||+.++. .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56778888888888888888888877 454
No 84
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.30 E-value=3.5e-06 Score=44.01 Aligned_cols=48 Identities=21% Similarity=0.534 Sum_probs=39.7
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 117 ISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 117 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
++..|++.+|+.+++.++++-+..+|+.+|.+++|.+.-+||..++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999998764
No 85
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.28 E-value=1.1e-05 Score=60.61 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=100.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHH--HHHc------------CCCCCHHHHHHH---HHhHccCCCCcccHHHHHHHH
Q 038366 27 QEIKEAFELFDTDGSGTIDAKELNVA--MRAL------------GFEMTEEQINQM---IADVDKDGSGAIDLDEFEHMM 89 (169)
Q Consensus 27 ~~~~~~f~~~D~~~~g~l~~~e~~~~--l~~~------------~~~~~~~~~~~l---~~~~~~~~~~~i~~~ef~~~~ 89 (169)
-.++++|..+++.++|.|+.+++... +..+ ..-.+.+....+ +..+|.+.+|.|+.++...+.
T Consensus 225 tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~ 304 (493)
T KOG2562|consen 225 TVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG 304 (493)
T ss_pred HHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHh
Confidence 34678898899999999999998763 2222 111233334444 677789999999999988776
Q ss_pred HHhhcCcchHHHHHHHHh----HhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 90 TAKIGERDSKEELMKAFH----IIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 90 ~~~~~~~~~~~~~~~~f~----~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
...+ ....+..+|. .+-...+|.|+.++|..++-++-..-++.-++..|+.+|.+++|.|+..|..-+..
T Consensus 305 d~tl----t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 305 DHTL----TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred ccch----hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 5542 2356778888 34456689999999999999887777888899999999999999999888765543
No 86
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.11 E-value=1.8e-05 Score=59.22 Aligned_cols=62 Identities=27% Similarity=0.523 Sum_probs=33.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcC----CCCCHHHHHHHHHhHccCCCCcccHHHHHHHHH
Q 038366 29 IKEAFELFDTDGSGTIDAKELNVAMRALG----FEMTEEQINQMIADVDKDGSGAIDLDEFEHMMT 90 (169)
Q Consensus 29 ~~~~f~~~D~~~~g~l~~~e~~~~l~~~~----~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~ 90 (169)
+..+|+..|.+++|.|+.+||..+.+.++ ...+..++.++.+.+|.++||.|++.||+.++.
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 44555555555555555555555544332 234455555555555555555555555555554
No 87
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.08 E-value=1.7e-06 Score=53.80 Aligned_cols=63 Identities=19% Similarity=0.386 Sum_probs=48.2
Q ss_pred chHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038366 97 DSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRM 161 (169)
Q Consensus 97 ~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~ 161 (169)
.....+...|..+|.+++|.|+..|+..+...+ ...+..+..++...|.|+||.|+..||..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 345778889999999999999999998877655 356677899999999999999999999864
No 88
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.06 E-value=7.8e-06 Score=36.54 Aligned_cols=25 Identities=44% Similarity=0.787 Sum_probs=19.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 038366 29 IKEAFELFDTDGSGTIDAKELNVAM 53 (169)
Q Consensus 29 ~~~~f~~~D~~~~g~l~~~e~~~~l 53 (169)
+++.|..+|.|++|.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4567888888888888888887753
No 89
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.04 E-value=3.3e-05 Score=58.95 Aligned_cols=75 Identities=25% Similarity=0.474 Sum_probs=67.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 17 RHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE---MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~---~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
..+.++++++..+.+.|...| +++|+++..++..++...+.. ...++++.+....+.+.+|.|+|++|+.++...
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 346789999999999999999 999999999999999988765 358899999999999999999999999977655
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.99 E-value=1.3e-05 Score=35.84 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=10.9
Q ss_pred HHHHHhccCCCCcccHHHHHH
Q 038366 140 EMVEEADRDHDGEVNADEFIR 160 (169)
Q Consensus 140 ~~~~~~d~d~~g~i~~~ef~~ 160 (169)
.+|..+|.|+||.|+.+||..
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 345555555555555555544
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.91 E-value=8e-05 Score=56.11 Aligned_cols=59 Identities=22% Similarity=0.311 Sum_probs=51.9
Q ss_pred CCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh
Q 038366 57 GFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL 129 (169)
Q Consensus 57 ~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 129 (169)
|.......+..+|+.+|.+++|.|+..||.. ...+|..+|.+++|.|+.+||.+.+...
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5567788899999999999999999999952 3568999999999999999999988754
No 92
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.78 E-value=0.00066 Score=52.92 Aligned_cols=143 Identities=18% Similarity=0.282 Sum_probs=98.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHH-HHHcCCCCCHHHHHHHHHhHccC---C--CCcccHHHHHHHHH
Q 038366 17 RHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVA-MRALGFEMTEEQINQMIADVDKD---G--SGAIDLDEFEHMMT 90 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~-l~~~~~~~~~~~~~~l~~~~~~~---~--~~~i~~~ef~~~~~ 90 (169)
..+.+.+.-++.|.++|...|.|.||.++-.|+-.. -+.++.++...++..+....+.. + +..++...|+-+..
T Consensus 185 ~~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 185 EEQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 345678899999999999999999999999998886 56667777777766665554322 1 34455566665543
Q ss_pred HhhcC-----------------------------------------cchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh
Q 038366 91 AKIGE-----------------------------------------RDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL 129 (169)
Q Consensus 91 ~~~~~-----------------------------------------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 129 (169)
..... ...-+-+..+|..+|.++||.++.+|+..++...
T Consensus 265 lfiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~ 344 (625)
T KOG1707|consen 265 LFIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA 344 (625)
T ss_pred HHHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC
Confidence 22211 1112457889999999999999999999999988
Q ss_pred CCCC-C-HHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 130 GVNF-T-DREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 130 ~~~~-~-~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
+... + ..+.+ ....+..|.++|+.|+..+.
T Consensus 345 P~~pW~~~~~~~----~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 345 PGSPWTSSPYKD----STVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCCCCcccc----cceecccceeehhhHHHHHH
Confidence 6433 1 01111 11224678999999988765
No 93
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.78 E-value=0.00012 Score=52.81 Aligned_cols=102 Identities=19% Similarity=0.217 Sum_probs=86.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHH
Q 038366 27 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFE-MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKA 105 (169)
Q Consensus 27 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 105 (169)
..++..|..||.+++|.++..|....+.-++.+ .+..-++..|..++...||.+.-.+|..++...++... -.+...
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~--l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEV--LRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcce--eecccc
Confidence 567889999999999999999998888877665 66777888899999999999999888888877655432 356789
Q ss_pred HhHhccCCCCCcCHHHHHHHHHHhC
Q 038366 106 FHIIDQDNNGKISAGDIKRIARELG 130 (169)
Q Consensus 106 f~~~D~~~~g~i~~~e~~~~l~~~~ 130 (169)
|...+...+|.|+.++|+.+....+
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCc
Confidence 9999999999999999999998765
No 94
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.77 E-value=8.5e-05 Score=63.04 Aligned_cols=66 Identities=24% Similarity=0.516 Sum_probs=59.5
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCC-------HHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIARELGVNFT-------DREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
.++..+|+.||++++|.++..+|+..|+..|..++ +++++.++...|++.+|+|+..+|+.+|-..
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 46788999999999999999999999999987763 4589999999999999999999999998654
No 95
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.69 E-value=0.001 Score=44.01 Aligned_cols=136 Identities=16% Similarity=0.168 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccC---CCCcccHHHHHHHHHHh----hc----
Q 038366 26 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKD---GSGAIDLDEFEHMMTAK----IG---- 94 (169)
Q Consensus 26 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~---~~~~i~~~ef~~~~~~~----~~---- 94 (169)
...+++-..-+|+|+||.|.+-|-...++++|..+.-.-+..++-..... ..+-+.-.-|.-.+... .+
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 34567777779999999999999999999999986554444443332111 11111111111011000 00
Q ss_pred -----CcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCC-------CCCHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038366 95 -----ERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGV-------NFTDREIHEMVEEADRDHDGEVNADEFIRMM 162 (169)
Q Consensus 95 -----~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-------~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l 162 (169)
..-..+.+..+|..++..+.+.+|..|+.++++.-.. ..+.-|...++..+ .+.+|.+..++-..+.
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 0112478999999999988999999999999986321 12344555555443 5788999888776554
No 96
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.68 E-value=0.00019 Score=42.08 Aligned_cols=65 Identities=22% Similarity=0.433 Sum_probs=51.4
Q ss_pred HHHHHHhHhccCCCCCcCHHHHHHHHHHhC-C-CCCHHHHHHHHHHhccC----CCCcccHHHHHHHHHhcC
Q 038366 101 ELMKAFHIIDQDNNGKISAGDIKRIARELG-V-NFTDREIHEMVEEADRD----HDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 101 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~-~~~~~~~~~~~~~~d~d----~~g~i~~~ef~~~l~~~~ 166 (169)
++..+|..+.. +.+.||.++|..+|.... . .++.+.+..++..+..+ ..+.+++++|..+|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 36778888855 788999999999998763 2 46889999999888655 468899999999987643
No 97
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.52 E-value=4.8e-05 Score=47.38 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=22.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHH
Q 038366 29 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFE 86 (169)
Q Consensus 29 ~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~ 86 (169)
+.=.|..+|.|+||.|+..|+..+...+ .+.+.=+...+..+|.++++.|+..|+.
T Consensus 56 ~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 56 VHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 3334555555555555555554443322 2223334444555555555555555543
No 98
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.45 E-value=0.0006 Score=52.34 Aligned_cols=64 Identities=27% Similarity=0.500 Sum_probs=55.8
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCC---CCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIARELGVN---FTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
.++...|...| +++|+|+..++..++...+.. ...++++.++...+.|.+|+|++++|+..+.+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 46778999998 999999999999999987643 35889999999999999999999999996543
No 99
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.00055 Score=42.00 Aligned_cols=59 Identities=19% Similarity=0.404 Sum_probs=44.0
Q ss_pred HHHHhHhccCCCCCcCHHHHHHHHHHh------CC---C-CCHHHHHHHH----HHhccCCCCcccHHHHHHH
Q 038366 103 MKAFHIIDQDNNGKISAGDIKRIAREL------GV---N-FTDREIHEMV----EEADRDHDGEVNADEFIRM 161 (169)
Q Consensus 103 ~~~f~~~D~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~~~~~~----~~~d~d~~g~i~~~ef~~~ 161 (169)
--.|...|-++++.|+.-|+...+... |. + .++.+++.++ +.-|.|+||.|+|.||++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 347888999999999999988877653 22 2 2455655554 4557789999999999875
No 100
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.27 E-value=0.0002 Score=49.87 Aligned_cols=60 Identities=28% Similarity=0.367 Sum_probs=32.3
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHH-HhCC--CCCHHHHHHHHHHhccCCCCcccHHHHH
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIAR-ELGV--NFTDREIHEMVEEADRDHDGEVNADEFI 159 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~-~~~~--~~~~~~~~~~~~~~d~d~~g~i~~~ef~ 159 (169)
..+..+|...|.+.+|.||..|+++++. .... .-+.++-+..|+..|.|+||+|+++||.
T Consensus 101 rklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 4455666666666666666666654433 2211 1233344455566666666666666654
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.24 E-value=0.00053 Score=30.73 Aligned_cols=27 Identities=52% Similarity=0.882 Sum_probs=20.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHH
Q 038366 29 IKEAFELFDTDGSGTIDAKELNVAMRA 55 (169)
Q Consensus 29 ~~~~f~~~D~~~~g~l~~~e~~~~l~~ 55 (169)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 566778888888888888888877764
No 102
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.22 E-value=0.0021 Score=37.63 Aligned_cols=64 Identities=25% Similarity=0.454 Sum_probs=47.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHhHccC----CCCcccHHHHHHHHHHh
Q 038366 28 EIKEAFELFDTDGSGTIDAKELNVAMRALGFE--MTEEQINQMIADVDKD----GSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 28 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~--~~~~~~~~l~~~~~~~----~~~~i~~~ef~~~~~~~ 92 (169)
++..+|..+.. +.+.|+.++|...|...... .+...+..++..+..+ ..+.++++.|..++...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36778888855 68888888888888776544 5788888888887544 36788888888887654
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.13 E-value=0.00083 Score=30.04 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=13.1
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHH
Q 038366 139 HEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 139 ~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
..++..+|.+++|.|++.+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3445555555555555555555543
No 104
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.09 E-value=0.0099 Score=48.94 Aligned_cols=111 Identities=18% Similarity=0.229 Sum_probs=87.6
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCH-----HHHHHHHHhHccCCCCcccHHHHHH
Q 038366 13 KIRGRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTE-----EQINQMIADVDKDGSGAIDLDEFEH 87 (169)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~-----~~~~~l~~~~~~~~~~~i~~~ef~~ 87 (169)
......+..++....+++..|+.+++...|.++..++..+|..+|...-. .++..+....+.+.-|.+++.+|..
T Consensus 733 il~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~d 812 (890)
T KOG0035|consen 733 ILERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFED 812 (890)
T ss_pred HHHhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHh
Confidence 33445667788999999999999999999999999999999999997653 2344444444444458899999999
Q ss_pred HHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHH
Q 038366 88 MMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKR 124 (169)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~ 124 (169)
.+............+..+|+.+-+++. .|..+||..
T Consensus 813 dl~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 813 DLEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HhhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 998887777777888889998866554 788888766
No 105
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0067 Score=46.60 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=64.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 17 RHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
.--.+++++++++...|+-+-++..|.|+-.--++++-... +.-.++..||...|.++||-+++.||+.++...
T Consensus 221 ~pw~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 221 TPWQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred CccccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 33457999999999999999999999999888888877644 556789999999999999999999999998754
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=96.32 E-value=0.079 Score=42.43 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=58.9
Q ss_pred CCcccHHHHHHHHHHhh-cCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHHhc-------
Q 038366 77 SGAIDLDEFEHMMTAKI-GERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGV--NFTDREIHEMVEEAD------- 146 (169)
Q Consensus 77 ~~~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d------- 146 (169)
.|.++|++|..+..... .....+.++..+|..+.. +.+.||.++|..+|..... ..+.+++..++..+-
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 46888888877766542 222346788888888854 4468999999988887642 356666776665431
Q ss_pred cCCCCcccHHHHHHHHHh
Q 038366 147 RDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 147 ~d~~g~i~~~ef~~~l~~ 164 (169)
....+.++++.|..+|..
T Consensus 93 ~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccCcCHHHHHHHHcC
Confidence 112345889999998864
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.016 Score=44.67 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=56.5
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
++.+..-|+.+-.+-.|+|+..--+.++.... ++-+|+..|+...|.|.||.+++.||+..+.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 56788899999899999999998888888665 8889999999999999999999999998864
No 108
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.0089 Score=49.74 Aligned_cols=139 Identities=21% Similarity=0.355 Sum_probs=111.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcC---
Q 038366 19 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGE--- 95 (169)
Q Consensus 19 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~--- 95 (169)
..++..+......+|....++ .|.++-...+.+|..-. +...-+..+|...|.+.+|.++..+|...+......
T Consensus 121 p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 121 PAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 447888889999999999886 88888888888877654 444567789999999999999999999877533210
Q ss_pred --------------------------------------------------------------------------------
Q 038366 96 -------------------------------------------------------------------------------- 95 (169)
Q Consensus 96 -------------------------------------------------------------------------------- 95 (169)
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence
Q ss_pred -cchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038366 96 -RDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 162 (169)
Q Consensus 96 -~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l 162 (169)
+.....+..+|...|.+.+|.|+..+...++...| ++...+..++...+..+.|.+++.+|+-.+
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~ 343 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAM 343 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhh
Confidence 01123456689999999999999999999988877 889999999999999999999999876554
No 109
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.05 E-value=0.0083 Score=43.71 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=52.4
Q ss_pred HHHHHHhHhccCCCCCcCHHHH---HHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcCC
Q 038366 101 ELMKAFHIIDQDNNGKISAGDI---KRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTF 167 (169)
Q Consensus 101 ~~~~~f~~~D~~~~g~i~~~e~---~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~~ 167 (169)
.+...|..+|++.++.|...|+ +.++.... -.......+++..|.|+|..|++.||..+|...+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 4677899999999999999984 55555433 34567788999999999999999999999876543
No 110
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.018 Score=46.62 Aligned_cols=68 Identities=25% Similarity=0.426 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHH
Q 038366 22 SQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTA 91 (169)
Q Consensus 22 ~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~ 91 (169)
+.-.....+.+|+.+|+...|+++-..-+.+|...++ +...+..||..-|.++||+++-+||+-.+..
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L--pq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL--PQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhcCC--chhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 4455677899999999999999999999999887664 4567889999999999999999999988754
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.78 E-value=0.13 Score=33.90 Aligned_cols=63 Identities=16% Similarity=0.405 Sum_probs=49.2
Q ss_pred HHHHHhh---CCCCCCcccHHHHHHHHHHcCC---CCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 30 KEAFELF---DTDGSGTIDAKELNVAMRALGF---EMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 30 ~~~f~~~---D~~~~g~l~~~e~~~~l~~~~~---~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+.+|..| -+.+...|+...|..+++..++ .++..++..+|..+...+..+|+|++|..++..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3445554 4566789999999999999866 4889999999999877777889999999998765
No 112
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.75 E-value=0.049 Score=42.80 Aligned_cols=75 Identities=17% Similarity=0.318 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhc
Q 038366 20 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIG 94 (169)
Q Consensus 20 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~ 94 (169)
.+++.++...+..|..+|.++.|..+..+...+|+..+...+...+.++.+..+.+.+|.+...+|..++.....
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999998899999999999999888999999999999877643
No 113
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.73 E-value=0.022 Score=49.17 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=51.7
Q ss_pred HHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 104 KAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 104 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
.-|+.+|++++|.|+..+|...++... +.+..+++.++..+..|.+.-.+|++|++-+.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 357778999999999999999998654 47899999999999999999999999998654
No 114
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.67 E-value=0.084 Score=34.81 Aligned_cols=62 Identities=8% Similarity=0.336 Sum_probs=44.0
Q ss_pred HHHHhHhc---cCCCCCcCHHHHHHHHHHhC---CCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 103 MKAFHIID---QDNNGKISAGDIKRIARELG---VNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 103 ~~~f~~~D---~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
..+|..|. ..+...|+...|..+++..+ ..++..+++.+|..+-..+...|+|++|+.+|..
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 34555552 45566788889999998864 3578899999999876666667999999888754
No 115
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.58 E-value=0.025 Score=41.60 Aligned_cols=62 Identities=16% Similarity=0.333 Sum_probs=48.5
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
+.++-..|..+|.+.+|.++..|++.+-.. -.+..++.+|...|...||.|+-.||+-++.+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 456778888888888888888887766542 45677888888888888888888888877654
No 116
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.49 E-value=0.035 Score=43.62 Aligned_cols=68 Identities=24% Similarity=0.452 Sum_probs=61.0
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcCCCC
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFGY 169 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~~~~ 169 (169)
...-|..+|.++.|.++.+++.++|+..+..++++.++.+++.++.+.+|.+...||.++++....|+
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 44677888999999999999999999999889999999999999999999999999999988766553
No 117
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.24 E-value=0.27 Score=40.07 Aligned_cols=98 Identities=17% Similarity=0.339 Sum_probs=71.9
Q ss_pred HHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHH
Q 038366 62 EEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEM 141 (169)
Q Consensus 62 ~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 141 (169)
..=+..++...|.+++|.+++.+-..++....... ....+...|+..+..+++.+...++..+...... .+ ++..+
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l-~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~--rp-ev~~~ 210 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL-SESKARRLFKESDNSQTGKLEEEEFVKFRKELTK--RP-EVYFL 210 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhh-hHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc--Cc-hHHHH
Confidence 33366788889999999999999888887654332 2366778888888888999999999888887763 23 66777
Q ss_pred HHHhccCCCCcccHHHHHHHHHh
Q 038366 142 VEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 142 ~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
|..+..+ .+.++.++++.++..
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~ 232 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEE 232 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHH
Confidence 7666544 667777776666643
No 118
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.22 E-value=1 Score=37.80 Aligned_cols=121 Identities=14% Similarity=0.299 Sum_probs=83.9
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHcc--CCCCc-----ccHHHHHHHHHHhhcCcchHHHHHHHHhHhc
Q 038366 38 TDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDK--DGSGA-----IDLDEFEHMMTAKIGERDSKEELMKAFHIID 110 (169)
Q Consensus 38 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~--~~~~~-----i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 110 (169)
.+.+|.|....+...+.+ .-.+..+......+.. ++... .+++.|..++..+ -++.++..+|..+.
T Consensus 159 vn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~kl----cpR~eie~iF~ki~ 231 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKL----CPRPEIEEIFRKIS 231 (1189)
T ss_pred ccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhc----CCchhHHHHHHHhc
Confidence 556777777666665544 2222344444444422 22223 4566666666554 33578999999998
Q ss_pred cCCCCCcCHHHHHHHHHHhC----------CCCCHHHHHHHHHHhccCC----CCcccHHHHHHHHHhc
Q 038366 111 QDNNGKISAGDIKRIARELG----------VNFTDREIHEMVEEADRDH----DGEVNADEFIRMMKRT 165 (169)
Q Consensus 111 ~~~~g~i~~~e~~~~l~~~~----------~~~~~~~~~~~~~~~d~d~----~g~i~~~ef~~~l~~~ 165 (169)
.+++-++|.++|..+++.-. ..+.+..+..++..+..|. .|+++-+.|+.+++.-
T Consensus 232 ~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 232 GKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred cCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhCC
Confidence 88889999999999998531 2357888999999998774 6899999999999873
No 119
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.57 Score=29.09 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=11.2
Q ss_pred HHHHhHhccCCCCCcCHHHHH
Q 038366 103 MKAFHIIDQDNNGKISAGDIK 123 (169)
Q Consensus 103 ~~~f~~~D~~~~g~i~~~e~~ 123 (169)
..+.+--|.+++|.|++.||.
T Consensus 120 D~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 120 DAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred HHHhcccccCCCceeeHHHHH
Confidence 344444455566666655553
No 120
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.14 E-value=0.68 Score=27.54 Aligned_cols=65 Identities=11% Similarity=0.341 Sum_probs=41.3
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHHHh-------CCC----CCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcCC
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIAREL-------GVN----FTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTF 167 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-------~~~----~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~~ 167 (169)
+.++.+|..+ .+.+|.++...|..+|... |.. ..+..++.+|... .....|+-++|++.++..|.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 5678888888 6778999999887777632 221 2677788888775 35677999999999987764
No 121
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.10 E-value=0.16 Score=37.00 Aligned_cols=66 Identities=14% Similarity=0.291 Sum_probs=48.7
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHHHh-----CCCCCHHH-----------HHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIAREL-----GVNFTDRE-----------IHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~-----------~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
-..+|..+|.+++|+++..|+..++..- ...-.+++ -+.++..+|+|.|.-|+.+||++.-.+.
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 4568888999999999999998877642 11111111 3457889999999999999999876655
Q ss_pred CC
Q 038366 166 TF 167 (169)
Q Consensus 166 ~~ 167 (169)
.+
T Consensus 326 ef 327 (442)
T KOG3866|consen 326 EF 327 (442)
T ss_pred cc
Confidence 44
No 122
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.03 E-value=0.027 Score=31.68 Aligned_cols=55 Identities=13% Similarity=0.230 Sum_probs=38.2
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC-------CCCcccHHHHHHH
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRD-------HDGEVNADEFIRM 161 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d-------~~g~i~~~ef~~~ 161 (169)
.+.+..+|+.+ .+++++||.+||++.|. ++.++.+...+..- ..|.++|..|++-
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 47789999999 78889999999998854 33345555544221 2367899888754
No 123
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.76 E-value=0.14 Score=37.80 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=72.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHc---CCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHH
Q 038366 27 QEIKEAFELFDTDGSGTIDAKELNVAMRAL---GFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELM 103 (169)
Q Consensus 27 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 103 (169)
.+|++.|..+-.+.++......+...-..+ ..++-..++.=+|..+|.+.++.++..|+..+-... .+.-+.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~Cik 285 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIK 285 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccC-----chhHHH
Confidence 357788888766555555444444442222 223557778889999999999999999977765433 346788
Q ss_pred HHHhHhccCCCCCcCHHHHHHHHHHhC
Q 038366 104 KAFHIIDQDNNGKISAGDIKRIARELG 130 (169)
Q Consensus 104 ~~f~~~D~~~~g~i~~~e~~~~l~~~~ 130 (169)
.+|...|...+|.|+..|...-+...+
T Consensus 286 pFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 286 PFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHHhhhcccccCccccchhhhhhccCC
Confidence 999999999999999999888877665
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=93.50 E-value=0.72 Score=37.09 Aligned_cols=106 Identities=11% Similarity=0.155 Sum_probs=71.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHhhC-----------CCCCC---cccHHHHHHHHHHcCC-CCCHHHHHHHHHhHccCCCCc
Q 038366 15 RGRHHGLSQQKKQEIKEAFELFD-----------TDGSG---TIDAKELNVAMRALGF-EMTEEQINQMIADVDKDGSGA 79 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~f~~~D-----------~~~~g---~l~~~e~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~ 79 (169)
......++.+++..+.++|..-= ++-.+ .++...|..++..+-. ..+..-+..+|+..|.+++|.
T Consensus 492 ~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~ 571 (671)
T KOG4347|consen 492 VVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGL 571 (671)
T ss_pred hcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcce
Confidence 34556788888888888886521 11111 1222333333332211 134555778999999999999
Q ss_pred ccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHH
Q 038366 80 IDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDI 122 (169)
Q Consensus 80 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~ 122 (169)
+++.+++..+........ -+.+.-+|+.+|++++ ....++.
T Consensus 572 Ltf~~lv~gL~~l~~~~~-~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 572 LTFKDLVSGLSILKAGDA-LEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred eEHHHHHHHHHHHHhhhH-HHHHHHHHhhccCCcc-ccccccc
Confidence 999999999987644433 3778899999999998 8888887
No 125
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=93.12 E-value=0.083 Score=32.67 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 133 FTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 133 ~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
+++++++.++..+-.|..|+|.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 7899999999999999999999999998765
No 126
>PLN02952 phosphoinositide phospholipase C
Probab=92.93 E-value=2.1 Score=34.62 Aligned_cols=87 Identities=13% Similarity=0.219 Sum_probs=60.3
Q ss_pred CCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCc-chHHHHHHHHhHh----c--
Q 038366 40 GSGTIDAKELNVAMRALGFE--MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGER-DSKEELMKAFHII----D-- 110 (169)
Q Consensus 40 ~~g~l~~~e~~~~l~~~~~~--~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~----D-- 110 (169)
+.|.+++++|..+.+.+... ....++..+|..+.. +.+.++.++|..++....+.. ...+....++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 46899999998887776432 368899999999964 446899999999998775533 2223344443322 1
Q ss_pred -cCCCCCcCHHHHHHHHH
Q 038366 111 -QDNNGKISAGDIKRIAR 127 (169)
Q Consensus 111 -~~~~g~i~~~e~~~~l~ 127 (169)
..+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 11235688999888876
No 127
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.51 E-value=0.98 Score=30.24 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=20.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 038366 27 QEIKEAFELFDTDGSGTIDAKELNVAMRA 55 (169)
Q Consensus 27 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~ 55 (169)
+.+.++|.++++.+.+.||..|+..+++.
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 45667777777766677777777777665
No 128
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=92.51 E-value=1.1 Score=37.36 Aligned_cols=145 Identities=10% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCHHHHHH-HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHH-HHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcch
Q 038366 21 LSQQKKQE-IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEE-QINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDS 98 (169)
Q Consensus 21 ~~~~~~~~-~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 98 (169)
.++.+|.. ++..+...|.+....++..+++..|..+.+.++.. .+.+-+... ..+.+.++|.+|..+...++-....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted-~~~k~dlsf~~f~~ly~~lmfs~~~ 215 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTED-GARKDDLSFEQFHLLYKKLMFSQQK 215 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHh-hhccccccHHHHHHHHHHHhhccch
Confidence 45555555 56678888888788899999999999888875433 332333333 2345679999999988766422111
Q ss_pred --HHHHHH--HHhHhccCCCCCcCHHHHHHHHHHhCCCCCH---HHHHHHHHHhccC-----CCCcccHHHHHHHHHhcC
Q 038366 99 --KEELMK--AFHIIDQDNNGKISAGDIKRIARELGVNFTD---REIHEMVEEADRD-----HDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 99 --~~~~~~--~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~---~~~~~~~~~~d~d-----~~g~i~~~ef~~~l~~~~ 166 (169)
..+... +...-+...-..++..+|.++|......... ..++.+++.|-.| ....++..||+.+|....
T Consensus 216 a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSre 295 (1267)
T KOG1264|consen 216 AILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSRE 295 (1267)
T ss_pred hhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhcc
Confidence 111111 1112233334679999999999865322222 2456666666444 345789999999986544
No 129
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=0.23 Score=41.76 Aligned_cols=132 Identities=20% Similarity=0.323 Sum_probs=104.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcC-----------
Q 038366 27 QEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGE----------- 95 (169)
Q Consensus 27 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~----------- 95 (169)
..+..+|..+|..++|.++-.+-...+...| +....+-.+|...+..+.|.++...|...+......
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 5678889999999999999999999888765 456678889999999988999999998877643210
Q ss_pred ------------------------------------cchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHH
Q 038366 96 ------------------------------------RDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIH 139 (169)
Q Consensus 96 ------------------------------------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~ 139 (169)
......+..+|..+.+. .|.++....+-++..-+ ++..-+.
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l~ 165 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVLG 165 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChhhhc
Confidence 00123456678887544 88999988888888766 7788888
Q ss_pred HHHHHhccCCCCcccHHHHHHHHH
Q 038366 140 EMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 140 ~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
.++...|.|.+|.++..+|.-.+.
T Consensus 166 ~iw~l~d~d~~g~Ld~~ef~~am~ 189 (847)
T KOG0998|consen 166 RIWELSDIDKDGNLDRDEFAVAMH 189 (847)
T ss_pred cccccccccccCCCChhhhhhhhh
Confidence 999999999999999999976553
No 130
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.80 E-value=0.16 Score=37.27 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=50.0
Q ss_pred HHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh
Q 038366 65 INQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL 129 (169)
Q Consensus 65 ~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 129 (169)
+.-.|..+|.|.++.|+-.|+..+=..+......+.-.+.+|+..|.++|-.||..|++.-|...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 34467888888888888777776655555555666778889999999999999999988877643
No 131
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=90.82 E-value=0.48 Score=38.00 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=43.7
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHH
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADE 157 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~e 157 (169)
..+..+|+.+|.+++|.|+..+|..-|..+-..-.-+.+.-++..++.+++ ..+.++
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 456789999999999999999998888876444455667778888887776 554443
No 132
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=90.58 E-value=2.4 Score=25.60 Aligned_cols=81 Identities=19% Similarity=0.297 Sum_probs=49.7
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCc
Q 038366 40 GSGTIDAKELNVAMRAL--GFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKI 117 (169)
Q Consensus 40 ~~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 117 (169)
.||.++..|...+-..+ ...++..+...+...+........++.+|...+...........-+..++... --||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCC
Confidence 37788888877664432 12456677777777776655667888888888776432212223344455544 345788
Q ss_pred CHHHH
Q 038366 118 SAGDI 122 (169)
Q Consensus 118 ~~~e~ 122 (169)
+..|-
T Consensus 90 ~~~E~ 94 (104)
T cd07313 90 DEYEE 94 (104)
T ss_pred CHHHH
Confidence 88874
No 133
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=90.57 E-value=1.1 Score=35.81 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=54.3
Q ss_pred cCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC----CHHHHHHHHHhHccCCCCcccHHHHHHHHHH
Q 038366 16 GRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM----TEEQINQMIADVDKDGSGAIDLDEFEHMMTA 91 (169)
Q Consensus 16 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~----~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~ 91 (169)
...-.+++.-++-+..+|..+|.++||-++..|+..++...+..+ ...+.-. .+..|.+++.-|...+..
T Consensus 304 ~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~------~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 304 DQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTV------KNERGWLTLNGFLSQWSL 377 (625)
T ss_pred CcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccce------ecccceeehhhHHHHHHH
Confidence 344568899999999999999999999999999999999876654 1111111 225788999999887765
Q ss_pred h
Q 038366 92 K 92 (169)
Q Consensus 92 ~ 92 (169)
.
T Consensus 378 ~ 378 (625)
T KOG1707|consen 378 M 378 (625)
T ss_pred H
Confidence 4
No 134
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.14 E-value=0.77 Score=40.55 Aligned_cols=58 Identities=24% Similarity=0.480 Sum_probs=48.1
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHH
Q 038366 32 AFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMT 90 (169)
Q Consensus 32 ~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~ 90 (169)
.|..||+++.|.|+..+|..+|..- ...+..++.-++.-...+.+..++|++|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 4677899999999999999998752 346778888888777778889999999998764
No 135
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=89.81 E-value=6 Score=28.68 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=59.4
Q ss_pred CCCCcccHHHHHHHHHHcC--CCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchH-H-HHHHHHhHhccCCC
Q 038366 39 DGSGTIDAKELNVAMRALG--FEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSK-E-ELMKAFHIIDQDNN 114 (169)
Q Consensus 39 ~~~g~l~~~e~~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~-~-~~~~~f~~~D~~~~ 114 (169)
.-||.++..|.. +.+.+. ..++.++-..+...+........++.+|+..+.......... + -+...|..- --|
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA--~AD 143 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAA--FAD 143 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH--Hhc
Confidence 359999999998 333331 334555533333444344445588999999887654321110 1 113334433 245
Q ss_pred CCcCHHH---HHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 115 GKISAGD---IKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 115 g~i~~~e---~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
|.++..| ++.+...+| ++..++..+...+
T Consensus 144 G~l~~~E~~~L~~Ia~~Lg--is~~df~~~~~~~ 175 (267)
T PRK09430 144 GSLHPNERQVLYVIAEELG--FSRFQFDQLLRMM 175 (267)
T ss_pred CCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 8899988 344444456 7888888877654
No 136
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=89.71 E-value=1.3 Score=37.13 Aligned_cols=68 Identities=24% Similarity=0.255 Sum_probs=54.0
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCH-----HHHHHHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTD-----REIHEMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
..+++..|..+++...|.++.+++...+..+|...-. .++..+....+.+..|++++.+|.+.|....
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 3678899999999999999999999999999976553 2344455555666779999999999886543
No 137
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=87.46 E-value=2.4 Score=27.46 Aligned_cols=71 Identities=8% Similarity=0.165 Sum_probs=39.4
Q ss_pred CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhH-------ccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccC
Q 038366 40 GSGTIDAKELNVAMRALGFEMTEEQINQMIADV-------DKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQD 112 (169)
Q Consensus 40 ~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~-------~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 112 (169)
..+.|++.||.++=+=+- .+...+..++..+ ..+..+.|+|+.|..+|...+....+.+-...+|..|-..
T Consensus 4 ~~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp --S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred ceeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 356777788777643322 2333455555555 2334678999999999998887667777778888888443
No 138
>PLN02222 phosphoinositide phospholipase C 2
Probab=86.96 E-value=4.9 Score=32.54 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=34.2
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHHHhCC--CCCHHHHHHHHHHhcc-CCCCcccHHHHHHHHHh
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIARELGV--NFTDREIHEMVEEADR-DHDGEVNADEFIRMMKR 164 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d~-d~~g~i~~~ef~~~l~~ 164 (169)
.++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+.. -..+.++++.|..+|..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 456666666532 356666666666665532 2345555555555421 12445666666666654
No 139
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=86.51 E-value=0.87 Score=29.16 Aligned_cols=95 Identities=23% Similarity=0.446 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCc
Q 038366 40 GSGTIDAKELNVAMRAL--GFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKI 117 (169)
Q Consensus 40 ~~g~l~~~e~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i 117 (169)
-||.++..|...+...+ ....+..+...+...+........++.+++..+...........-+..++...-. ||.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DGEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TTC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CCCC
Confidence 48999999988876655 2334455566666666544444677778776665432211222344555555544 5677
Q ss_pred CHHH---HHHHHHHhCCCCCHHHH
Q 038366 118 SAGD---IKRIARELGVNFTDREI 138 (169)
Q Consensus 118 ~~~e---~~~~l~~~~~~~~~~~~ 138 (169)
+..| +..+...+| ++++++
T Consensus 114 ~~~E~~~l~~ia~~L~--i~~~~~ 135 (140)
T PF05099_consen 114 SPEEQEFLRRIAEALG--ISEEDF 135 (140)
T ss_dssp SCCHHHHHHHHHHHCT--S-SS--
T ss_pred CHHHHHHHHHHHHHcC--CCHHHH
Confidence 7766 455555566 444443
No 140
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=86.03 E-value=1.3 Score=32.55 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=41.7
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHH----cCCCCC-HHH-----------HHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 32 AFELFDTDGSGTIDAKELNVAMRA----LGFEMT-EEQ-----------INQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 32 ~f~~~D~~~~g~l~~~e~~~~l~~----~~~~~~-~~~-----------~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
.|...|.|+||.++-.|+..++.. +-.+.+ +.+ -..++..+|.+.+..|+.++|+..-...
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 466778899999999999887543 211111 111 2335667789999999999998866543
No 141
>PLN02228 Phosphoinositide phospholipase C
Probab=86.01 E-value=6.7 Score=31.67 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=14.3
Q ss_pred CHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 61 TEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+..++..+|..+.. ++.++.++|..++...
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~ 51 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEV 51 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHh
Confidence 34455555555432 1345555555555443
No 142
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=85.94 E-value=4.3 Score=22.78 Aligned_cols=46 Identities=13% Similarity=0.204 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 118 SAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 118 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
+-+++..+++..|..++++++..+++.-+..+--..+-..+..+|.
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 3445667777777777777777777664333333344444444443
No 143
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.86 E-value=6.2 Score=32.08 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=44.9
Q ss_pred hHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCC---CCCHHHHHHHHHHhcc-------CCCCcccHHHHHHHHHh
Q 038366 98 SKEELMKAFHIIDQDNNGKISAGDIKRIARELGV---NFTDREIHEMVEEADR-------DHDGEVNADEFIRMMKR 164 (169)
Q Consensus 98 ~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~d~-------d~~g~i~~~ef~~~l~~ 164 (169)
+..++..+|..+..+ .+.||.++|..+|..... ..+.+++..++..+-. -..+.++.+.|..+|..
T Consensus 27 p~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 456788888888533 378888888888887652 2456666666654421 12346889999888865
No 144
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=84.69 E-value=6.1 Score=23.22 Aligned_cols=34 Identities=9% Similarity=0.313 Sum_probs=25.5
Q ss_pred CCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Q 038366 115 GKISAGDIKRIARELGVNFTDREIHEMVEEADRD 148 (169)
Q Consensus 115 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d 148 (169)
..||..||.++.+.+|.++|+++++.++..+-.+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 3578888888888888888888888777776443
No 145
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=83.55 E-value=1.2 Score=27.75 Aligned_cols=33 Identities=18% Similarity=0.468 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 60 MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+++++++.+|..+-.+..|++.|.+|+.-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 689999999999999999999999999877643
No 146
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=83.46 E-value=4.5 Score=24.37 Aligned_cols=52 Identities=12% Similarity=0.021 Sum_probs=24.7
Q ss_pred CCcccHHHHHHHHHHhhc-CcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHH
Q 038366 77 SGAIDLDEFEHMMTAKIG-ERDSKEELMKAFHIIDQDNNGKISAGDIKRIARE 128 (169)
Q Consensus 77 ~~~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 128 (169)
||.++-.|--.+-..... ..........+...+........+..++...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 667777665554432211 0112233444444444444445666666555554
No 147
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.63 E-value=2.6 Score=23.77 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=28.2
Q ss_pred cccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh
Q 038366 79 AIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL 129 (169)
Q Consensus 79 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 129 (169)
-++|...+..+...+. ......+...|+.=+.+.|+.+||-..++.+
T Consensus 8 ~~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3555555555555432 2445555555555556788888887777764
No 148
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=80.48 E-value=5.7 Score=21.69 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=28.6
Q ss_pred CCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 038366 115 GKISAGDIKRIARELGVNFTDREIHEMVEEADR 147 (169)
Q Consensus 115 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 147 (169)
-.+|.+|+...+..++..++..++-.++..+-.
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~ 40 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVHG 40 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999999999987643
No 149
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.89 E-value=6.3 Score=32.47 Aligned_cols=78 Identities=19% Similarity=0.407 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh---C-----CCCCHHHHHHHHHHhccCCCC
Q 038366 80 IDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL---G-----VNFTDREIHEMVEEADRDHDG 151 (169)
Q Consensus 80 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~d~d~~g 151 (169)
+++++|. ......+..++..|..+|. ++|.++.+++..++... + ...+.+....++...+.+..|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 5666665 2233445666666666665 66777777766665532 1 123344455566666666666
Q ss_pred cccHHHHHHHHHh
Q 038366 152 EVNADEFIRMMKR 164 (169)
Q Consensus 152 ~i~~~ef~~~l~~ 164 (169)
.+.+.++..++..
T Consensus 77 y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 77 YITNEDLEILLLQ 89 (646)
T ss_pred eeeecchhHHHHh
Confidence 6666655555543
No 150
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=79.63 E-value=12 Score=23.25 Aligned_cols=44 Identities=9% Similarity=0.225 Sum_probs=36.4
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
+..+|......++..+|.+++..+|...|..+.+..+..++..+
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L 48 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSL 48 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 34556666667777899999999999999998888888888877
No 151
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=79.13 E-value=41 Score=28.99 Aligned_cols=93 Identities=14% Similarity=0.258 Sum_probs=61.9
Q ss_pred HHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHh--ccCCCCCcCHHHH-----HHHHHHhCCCCCHHHHH
Q 038366 67 QMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHII--DQDNNGKISAGDI-----KRIARELGVNFTDREIH 139 (169)
Q Consensus 67 ~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~--D~~~~g~i~~~e~-----~~~l~~~~~~~~~~~~~ 139 (169)
.+.-.+..+..|+|..+.++..+..-. ....+..+...+ -.++...|..++| ..++..+. ...+++
T Consensus 152 ~tklkmqvn~~grip~knI~k~F~~~k----~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc---pR~eie 224 (1189)
T KOG1265|consen 152 HTKLKMQVNFEGRIPVKNIIKTFSADK----KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC---PRPEIE 224 (1189)
T ss_pred HHhhhhcccccccccHHHHHHHhhcCC----chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC---CchhHH
Confidence 344445667788898888888776531 114444554443 2233455666654 44444332 347999
Q ss_pred HHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 140 EMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 140 ~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
.+|..+..+....++.+++.++|++..
T Consensus 225 ~iF~ki~~~~kpylT~~ql~dfln~~Q 251 (1189)
T KOG1265|consen 225 EIFRKISGKKKPYLTKEQLVDFLNKKQ 251 (1189)
T ss_pred HHHHHhccCCCccccHHHHHHHHhhhc
Confidence 999999998888999999999998764
No 152
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=79.04 E-value=15 Score=23.84 Aligned_cols=70 Identities=10% Similarity=0.139 Sum_probs=39.1
Q ss_pred CCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCC-------CCCcCHHHHHHHHHHh-CCCCCHHHHHHHHHHhcc
Q 038366 76 GSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDN-------NGKISAGDIKRIAREL-GVNFTDREIHEMVEEADR 147 (169)
Q Consensus 76 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~-------~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~ 147 (169)
..+.++..||.++-.-.-.. ...+..+...|..+| .+.|+.+-|+.+|+.. ...++++-...+|..|..
T Consensus 4 ~~~~lsp~eF~qLq~y~eys---~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 4 EWVSLSPEEFAQLQKYSEYS---TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp --S-S-HHHHHHHHHHHHH-------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred ceeccCHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 35678888888875433211 134555555553322 4689999999999995 666888889999998855
Q ss_pred C
Q 038366 148 D 148 (169)
Q Consensus 148 d 148 (169)
.
T Consensus 81 ~ 81 (138)
T PF14513_consen 81 K 81 (138)
T ss_dssp -
T ss_pred c
Confidence 3
No 153
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=78.49 E-value=9.6 Score=21.37 Aligned_cols=49 Identities=10% Similarity=0.267 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 44 IDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 44 l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
++-.++..++...|..++..++..+++.-+..+-...+-+.+..++..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 3455677888888888888888888877655544444444454444443
No 154
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=78.01 E-value=14 Score=22.84 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=38.4
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
+..+|..+...++...+..+++.+|...|..+.++.++.++..+
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel 46 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSEL 46 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHh
Confidence 34567777888888999999999999999999999999999876
No 155
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=77.76 E-value=9.5 Score=23.05 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=38.4
Q ss_pred CCCcccHHHHHHHHHHcCC-----CCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCC
Q 038366 40 GSGTIDAKELNVAMRALGF-----EMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNN 114 (169)
Q Consensus 40 ~~g~l~~~e~~~~l~~~~~-----~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 114 (169)
.||.++..|...+...+.. ......+..++......- ...+..++...+...........-+..++... .-|
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia--~aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIA--AAD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHH--Hcc
Confidence 3778888887777665531 233444555554442210 02344555555555433111112233344444 335
Q ss_pred CCcCHHH
Q 038366 115 GKISAGD 121 (169)
Q Consensus 115 g~i~~~e 121 (169)
|.++..|
T Consensus 92 G~~~~~E 98 (111)
T cd07176 92 GEVDPEE 98 (111)
T ss_pred CCCCHHH
Confidence 7777766
No 156
>PLN02222 phosphoinositide phospholipase C 2
Probab=77.69 E-value=15 Score=29.87 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=46.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHhHcc-CCCCcccHHHHHHHHHHh
Q 038366 28 EIKEAFELFDTDGSGTIDAKELNVAMRALGFE--MTEEQINQMIADVDK-DGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 28 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~--~~~~~~~~l~~~~~~-~~~~~i~~~ef~~~~~~~ 92 (169)
++..+|..+-. ++.|+.++|...|...... .+.+.+..|+..+.. ...+.++++.|..++...
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 55666666643 4799999999999887664 567788888887632 235679999999998653
No 157
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=76.78 E-value=15 Score=25.18 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=6.5
Q ss_pred CCcccHHHHHHHHH
Q 038366 77 SGAIDLDEFEHMMT 90 (169)
Q Consensus 77 ~~~i~~~ef~~~~~ 90 (169)
+|+|+.+++...+.
T Consensus 11 DGTITl~Ds~~~it 24 (220)
T COG4359 11 DGTITLNDSNDYIT 24 (220)
T ss_pred CCceEecchhHHHH
Confidence 44455444444443
No 158
>PLN02228 Phosphoinositide phospholipase C
Probab=76.71 E-value=20 Score=29.11 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=45.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC--CCHHHHHHHHHhHccC----CCCcccHHHHHHHHHHh
Q 038366 28 EIKEAFELFDTDGSGTIDAKELNVAMRALGFE--MTEEQINQMIADVDKD----GSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 28 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~--~~~~~~~~l~~~~~~~----~~~~i~~~ef~~~~~~~ 92 (169)
++..+|..+-. ++.|+.++|...|...... .+...+..++..+... ..+.++.+.|..++...
T Consensus 25 ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 25 SIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 34555555533 3589999999999887543 5667788888888543 24679999999998643
No 159
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=76.50 E-value=11 Score=23.10 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=14.0
Q ss_pred HhHccCCCCcccHHHHHHHHH
Q 038366 70 ADVDKDGSGAIDLDEFEHMMT 90 (169)
Q Consensus 70 ~~~~~~~~~~i~~~ef~~~~~ 90 (169)
+.+|......|+.++...++.
T Consensus 10 RLYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred cccCCCccceeeHHHHHHHHH
Confidence 345666677777777766664
No 160
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=76.40 E-value=13 Score=21.85 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhh--cCcchHHHHHHHHhHh
Q 038366 42 GTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKI--GERDSKEELMKAFHII 109 (169)
Q Consensus 42 g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~ 109 (169)
..||..||..+-+..+.+++..+.+.+...+..++-...+-++=..++.... .++.....+..+|..|
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999888666655555555555554432 2233334455555543
No 161
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=76.03 E-value=12 Score=28.06 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=62.4
Q ss_pred ccccCCCCCCHHHHHHHHHHHHh--hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHH
Q 038366 13 KIRGRHHGLSQQKKQEIKEAFEL--FDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMT 90 (169)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~f~~--~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~ 90 (169)
+.....+.++.++.-.+.-.|.. +|+.+.|.++..-.+-.|..++..--...+..++... .+..|.+.+-.|..++.
T Consensus 94 krL~ss~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 94 KRLPSSHQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLH 172 (434)
T ss_pred ccCcccccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHH
Confidence 45556667777777666666655 6888899999998888888877766677788888888 46678888888888887
Q ss_pred HhhcC
Q 038366 91 AKIGE 95 (169)
Q Consensus 91 ~~~~~ 95 (169)
..++.
T Consensus 173 evlsl 177 (434)
T KOG4301|consen 173 EVLSL 177 (434)
T ss_pred HHHcC
Confidence 66554
No 162
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.83 E-value=3.7 Score=31.02 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=36.4
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHH
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMV 142 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 142 (169)
.+.++++|..+|+.+.|+|+.+-++.++...+..+++.+.-.+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~ 351 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLM 351 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHh
Confidence 57899999999999999999999999999988666655544333
No 163
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=74.43 E-value=18 Score=22.42 Aligned_cols=54 Identities=24% Similarity=0.447 Sum_probs=40.5
Q ss_pred HHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038366 103 MKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRM 161 (169)
Q Consensus 103 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~ 161 (169)
..+|......++..+|.+++..++...|..+.+.-+..++..+.. .+.++++.-
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~ 57 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAA 57 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 345666666777899999999999999998888888888887632 345555543
No 164
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=74.37 E-value=4.3 Score=17.02 Aligned_cols=16 Identities=31% Similarity=0.694 Sum_probs=9.5
Q ss_pred CCCCCCcccHHHHHHH
Q 038366 37 DTDGSGTIDAKELNVA 52 (169)
Q Consensus 37 D~~~~g~l~~~e~~~~ 52 (169)
|.|++|.++.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4566777776666543
No 165
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=74.05 E-value=9.4 Score=23.12 Aligned_cols=62 Identities=11% Similarity=0.274 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccC---CCCcccHHHHHHHHHHh
Q 038366 26 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKD---GSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 26 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~---~~~~i~~~ef~~~~~~~ 92 (169)
...++..|..+-. +|.|+...|..++.. .-+.+-..+||..+... ....|+.+|+..++...
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM---~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGM---KDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCC---cccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 5556666666645 778888887777643 23444444444443221 13556666666666543
No 166
>PLN02230 phosphoinositide phospholipase C 4
Probab=73.28 E-value=28 Score=28.53 Aligned_cols=65 Identities=15% Similarity=0.336 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCC---CCHHHHHHHHHhHccC-------CCCcccHHHHHHHHHH
Q 038366 26 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFE---MTEEQINQMIADVDKD-------GSGAIDLDEFEHMMTA 91 (169)
Q Consensus 26 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~---~~~~~~~~l~~~~~~~-------~~~~i~~~ef~~~~~~ 91 (169)
..++..+|..+-.+ .+.|+.++|...|...... .+...+..++..+-.. +.+.++.+.|..++..
T Consensus 28 ~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 35677788887443 4899999999999998742 3566677777654221 2346999999998864
No 167
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=73.05 E-value=10 Score=19.12 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhC-C-CCCCcccHHHHHHHHHH
Q 038366 24 QKKQEIKEAFELFD-T-DGSGTIDAKELNVAMRA 55 (169)
Q Consensus 24 ~~~~~~~~~f~~~D-~-~~~g~l~~~e~~~~l~~ 55 (169)
..+..+..+|..|- + .....++..||+.+|..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34567778888874 2 34678999999998875
No 168
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=70.61 E-value=5.5 Score=23.10 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=18.6
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 038366 113 NNGKISAGDIKRIARELGVNFTDREIHEMVEEADR 147 (169)
Q Consensus 113 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 147 (169)
..|+||..++..+|.... ++++.++.++..+..
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLED 50 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHT
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHH
Confidence 357777777777777433 677777777766643
No 169
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.07 E-value=5.2 Score=30.32 Aligned_cols=67 Identities=21% Similarity=0.366 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHH-HHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 26 KQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQ-INQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 26 ~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
-..+++.|..+|+.+.|.|+..-+..++...+...++.. +...-..++...-|.|-..+|...+...
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p~ 375 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFPT 375 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccCc
Confidence 467899999999999999999999999999886655544 3344444566666666666665555443
No 170
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=68.95 E-value=17 Score=20.13 Aligned_cols=37 Identities=8% Similarity=0.247 Sum_probs=30.8
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCC
Q 038366 113 NNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDH 149 (169)
Q Consensus 113 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~ 149 (169)
.++.++..++.+.+...|..++++.+..-++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567899999998888888888999999998887665
No 171
>PLN02223 phosphoinositide phospholipase C
Probab=67.57 E-value=40 Score=27.22 Aligned_cols=65 Identities=8% Similarity=-0.025 Sum_probs=42.6
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHH---HHh-C-CCCCHHHHHHHHHHhccC--------CCCcccHHHHHHHHHh
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIA---REL-G-VNFTDREIHEMVEEADRD--------HDGEVNADEFIRMMKR 164 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~d--------~~g~i~~~ef~~~l~~ 164 (169)
-+.+..+|..+. .+.|.++.+.+..++ ... | ...+.++++.++..+-.. ..+.++.+.|..+|..
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 366777888773 566788888888777 333 2 235666667766654221 2255888888888865
No 172
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=67.55 E-value=12 Score=21.15 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=31.1
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhc
Q 038366 42 GTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIG 94 (169)
Q Consensus 42 g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~ 94 (169)
..+++..+..++.. .++......+...|+.=+.+.|+-++|+..+....+
T Consensus 7 p~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 7 PWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred CcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 34554444444443 445555666666665555678899999888887744
No 173
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=67.17 E-value=23 Score=20.81 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh
Q 038366 60 MTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL 129 (169)
Q Consensus 60 ~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 129 (169)
++..+....++..-. ..-.|.+.+|...+....+.... .+...+=..+|-..+|.||.=||--+.+-+
T Consensus 4 ITK~eA~~FW~~~Fg-~r~IVPW~~F~~~L~~~h~~~~~-~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFG-KRTIVPWSEFRQALQKVHPISSG-LEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SSHHHHHHHHHHHT-T-SEEEHHHHHHHHHHHS--SSH-HHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred eccHHHHHHHHHHCC-CCeEeeHHHHHHHHHHhcCCCch-HHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 344555555555422 23457777777777665444433 222333335677777777776665444433
No 174
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=66.97 E-value=15 Score=33.61 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC-----CHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 20 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM-----TEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 20 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~-----~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
.+++.+.+...++|..+|++.+|.|...++...++.+..++ ... +.+...+....++.|++.+-+.++...
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 58999999999999999999999999999999999974432 122 334444455578889988887777544
No 175
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=65.92 E-value=14 Score=20.44 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=24.9
Q ss_pred HhccCCCCCcCHHHHHHHHHH----------hCCCCCHHHHHHHHHH
Q 038366 108 IIDQDNNGKISAGDIKRIARE----------LGVNFTDREIHEMVEE 144 (169)
Q Consensus 108 ~~D~~~~g~i~~~e~~~~l~~----------~~~~~~~~~~~~~~~~ 144 (169)
.||...+.+||.+++.++... .|..+|..-+-.++-.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred cccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 467788888888888888774 2555666555555443
No 176
>PRK00523 hypothetical protein; Provisional
Probab=65.36 E-value=23 Score=20.08 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=28.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhH
Q 038366 41 SGTIDAKELNVAMRALGFEMTEEQINQMIADV 72 (169)
Q Consensus 41 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 72 (169)
+-.|+.+-++..+.+.|..+++..+..+.+.+
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 55799999999999999999999999998876
No 177
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.16 E-value=17 Score=27.96 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=46.9
Q ss_pred HHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHH
Q 038366 101 ELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIR 160 (169)
Q Consensus 101 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~ 160 (169)
....+|..+. .-+|.||...-+..|.... ++...+-.++...|.|.||.++-+||.-
T Consensus 445 ~yde~fy~l~-p~~gk~sg~~ak~~mv~sk--lpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 445 TYDEIFYTLS-PVNGKLSGRNAKKEMVKSK--LPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred chHhhhhccc-ccCceeccchhHHHHHhcc--CchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 4667787774 4579999988887777544 8889999999999999999999999964
No 178
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=65.12 E-value=31 Score=21.52 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=33.7
Q ss_pred HHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 104 KAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 104 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
.+|...-..++..+|.+++..+|...|..+.+.-+..++..+
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L 46 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEV 46 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 445555556677899999999999999888888888888777
No 179
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.03 E-value=38 Score=22.10 Aligned_cols=102 Identities=21% Similarity=0.345 Sum_probs=66.7
Q ss_pred HHHHhhCCCCCCcccHHHHHHHH--HHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhH
Q 038366 31 EAFELFDTDGSGTIDAKELNVAM--RALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHI 108 (169)
Q Consensus 31 ~~f~~~D~~~~g~l~~~e~~~~l--~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 108 (169)
-+|..... ||.+...|..... .+-.+..+..++..+......-+...+++..|...+...+......+-+...++.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777655 6677777765542 2234567778888888877666777899999999988665443333444555555
Q ss_pred hccCCCCCcCHHHH---HHHHHHhCCCCCHHHH
Q 038366 109 IDQDNNGKISAGDI---KRIARELGVNFTDREI 138 (169)
Q Consensus 109 ~D~~~~g~i~~~e~---~~~l~~~~~~~~~~~~ 138 (169)
. .-||.++..|- +.+...+| +++++.
T Consensus 112 a--~ADg~l~e~Ed~vi~RvAeLLg--V~~~d~ 140 (148)
T COG4103 112 A--YADGELDESEDHVIWRVAELLG--VSPEDR 140 (148)
T ss_pred H--HccccccHHHHHHHHHHHHHhC--CCHHHH
Confidence 4 45678888874 44555567 455543
No 180
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.92 E-value=53 Score=23.80 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhh-CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 25 KKQEIKEAFELF-DTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 25 ~~~~~~~~f~~~-D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
....+...|..+ |+.-+..|..+-+..+...+|..+....+.-+--.++...-+..+.++|+..+...
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTAL 130 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHc
Confidence 345566666665 55555789999999999999999877666666556666666788889998877654
No 181
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=63.57 E-value=55 Score=27.66 Aligned_cols=140 Identities=11% Similarity=0.155 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHc--------CCCCC-----HHHHHHHHHhHccCCCCcccHHHHHHHH
Q 038366 24 QKKQEIKEAFELFDTD-GSGTIDAKELNVAMRAL--------GFEMT-----EEQINQMIADVDKDGSGAIDLDEFEHMM 89 (169)
Q Consensus 24 ~~~~~~~~~f~~~D~~-~~g~l~~~e~~~~l~~~--------~~~~~-----~~~~~~l~~~~~~~~~~~i~~~ef~~~~ 89 (169)
-...-+.++|..++-+ ++..+...+...+|-.. |.-.. +--+.-++..||...+|.|..-+|.-.+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 3445567778887755 55667777666655332 22111 1124457889999999999999988877
Q ss_pred HHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHH-------HHh------CCCCCHHHHHHHHHHhccCCCCcccHH
Q 038366 90 TAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIA-------REL------GVNFTDREIHEMVEEADRDHDGEVNAD 156 (169)
Q Consensus 90 ~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l-------~~~------~~~~~~~~~~~~~~~~d~d~~g~i~~~ 156 (169)
..+ .....++.++.+|.....++...+ ...|..+| ..+ |..--+..++..|+ ..++-..|+..
T Consensus 497 i~l-ck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~--~v~~~pei~~~ 572 (966)
T KOG4286|consen 497 ISL-CKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQ--FVNNKPEIEAA 572 (966)
T ss_pred HHH-hcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHH--hcCCCCcchHH
Confidence 654 333445788899999876665444 44443333 322 33222345677777 34666789999
Q ss_pred HHHHHHHhcCC
Q 038366 157 EFIRMMKRTTF 167 (169)
Q Consensus 157 ef~~~l~~~~~ 167 (169)
.|+..+...|.
T Consensus 573 ~f~dw~~~epq 583 (966)
T KOG4286|consen 573 LFLDWMRLEPQ 583 (966)
T ss_pred HHHHHhccCcc
Confidence 99988776554
No 182
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=63.23 E-value=24 Score=19.54 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=28.5
Q ss_pred CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 114 NGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 114 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
+-.|+.+-++..+...|..+|+..+..+.+.+
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45799999999999999999999999988765
No 183
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=62.65 E-value=31 Score=20.58 Aligned_cols=61 Identities=21% Similarity=0.425 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHc-------C----CCCCHHHHHHHHHhHccCCCCcccHHHHHHHHH
Q 038366 27 QEIKEAFELFDTDGSGTIDAKELNVAMRAL-------G----FEMTEEQINQMIADVDKDGSGAIDLDEFEHMMT 90 (169)
Q Consensus 27 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~-------~----~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~ 90 (169)
.+++-+|..+ .|++|.++...|..+|..+ | +...+..+...|... .....|+.++|+.-+.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 4567778877 6778889998888887653 1 112444455555543 1234566666666554
No 184
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=59.93 E-value=39 Score=20.90 Aligned_cols=55 Identities=22% Similarity=0.432 Sum_probs=41.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHH
Q 038366 31 EAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMT 90 (169)
Q Consensus 31 ~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~ 90 (169)
..|-.++..++-..+..+++.+|.++|.....+.+..++..+. |+ +.+|.+..=.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~G~ 59 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAAGR 59 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHHhH
Confidence 3455556666777889999999999999999999999988873 22 6677666433
No 185
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=59.88 E-value=26 Score=22.68 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=39.2
Q ss_pred CCCCCcCHHHHHHHHHHhC---------CCCCHHHHHHHHHHhccCCCC-cccHHHHHHH
Q 038366 112 DNNGKISAGDIKRIARELG---------VNFTDREIHEMVEEADRDHDG-EVNADEFIRM 161 (169)
Q Consensus 112 ~~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~d~~g-~i~~~ef~~~ 161 (169)
=|+..||.+||.+++..-. +.+.++++..+...+...+.+ .++..|-+..
T Consensus 79 lGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 79 LGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred ECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 3567899999999988642 236899999999999886665 4999887765
No 186
>PLN02223 phosphoinositide phospholipase C
Probab=58.83 E-value=67 Score=26.02 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHH---HHcCC--CCCHHHHHHHHHhHccCC--------CCcccHHHHHHHHHH
Q 038366 28 EIKEAFELFDTDGSGTIDAKELNVAM---RALGF--EMTEEQINQMIADVDKDG--------SGAIDLDEFEHMMTA 91 (169)
Q Consensus 28 ~~~~~f~~~D~~~~g~l~~~e~~~~l---~~~~~--~~~~~~~~~l~~~~~~~~--------~~~i~~~ef~~~~~~ 91 (169)
.++.+|..+ ..+.|.|+...+...| ..... ..+.++.+.++..+-... .+.++.+.|..++..
T Consensus 17 ~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 17 LILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 455666666 3567899999999988 44333 366777777776653322 256999999999865
No 187
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=58.55 E-value=41 Score=20.68 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=32.4
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038366 117 ISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 162 (169)
Q Consensus 117 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l 162 (169)
||.+++..+|...|..+.+..+..++..+. ..+.++++.-.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHH
Confidence 999999999999999999999998888762 23555555443
No 188
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.35 E-value=32 Score=19.39 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=28.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHc
Q 038366 41 SGTIDAKELNVAMRALGFEMTEEQINQMIADVD 73 (169)
Q Consensus 41 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~ 73 (169)
+..|+.+-++..+...|..+++..+.++++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 567999999999999999999999999888763
No 189
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=58.31 E-value=3.5 Score=28.33 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 112 DNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 112 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
.-+|++|..|+.-+-. .....+.....+|.-.|.|+||.|+..||..++.
T Consensus 200 p~d~~~sh~el~pl~a--p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 200 PIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred CccccccccccccccC--CcccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 3478888877644322 2223456677889999999999999999987653
No 190
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=55.57 E-value=21 Score=19.53 Aligned_cols=27 Identities=7% Similarity=0.255 Sum_probs=20.0
Q ss_pred CcCHHHHHHHHHHhCCCCCHHHHHHHH
Q 038366 116 KISAGDIKRIARELGVNFTDREIHEMV 142 (169)
Q Consensus 116 ~i~~~e~~~~l~~~~~~~~~~~~~~~~ 142 (169)
.|+.++|...|+.....++.+++...-
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 478888888888887778887776543
No 191
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=55.43 E-value=57 Score=23.74 Aligned_cols=9 Identities=33% Similarity=0.885 Sum_probs=4.3
Q ss_pred CCCcCHHHH
Q 038366 114 NGKISAGDI 122 (169)
Q Consensus 114 ~g~i~~~e~ 122 (169)
||.||..|+
T Consensus 69 DG~Vse~Ei 77 (267)
T PRK09430 69 KGRVTEADI 77 (267)
T ss_pred CCCcCHHHH
Confidence 444554444
No 192
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=54.91 E-value=53 Score=20.85 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=30.1
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHHHHHh
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIAREL-GVNFTDREIHEMVEEA 145 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 145 (169)
.+.+..+|+.|-. +.|+.+.+..++.+. |..+|...+..++..+
T Consensus 36 ~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 36 LDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 4566677777743 467777777777766 4677777777766655
No 193
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=54.54 E-value=27 Score=27.64 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=46.9
Q ss_pred HHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh---cc----CC-CCcccHHHHHHHHHh
Q 038366 103 MKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA---DR----DH-DGEVNADEFIRMMKR 164 (169)
Q Consensus 103 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~----d~-~g~i~~~ef~~~l~~ 164 (169)
.-+|..+....++.++.-.|.++|+..|..-++.-+..++..+ +. +. -+.++.+-|.+++..
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 4578888666679999999999999999988887777777654 21 12 245888888887643
No 194
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=54.53 E-value=24 Score=24.10 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=22.8
Q ss_pred ccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 110 DQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 110 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
..+.+|++..+|+-+.+..-+..++.+++..+...-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 457789999999888888777778899988888764
No 195
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=53.66 E-value=18 Score=20.59 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=7.8
Q ss_pred CCCcCHHHHHHHHHH
Q 038366 114 NGKISAGDIKRIARE 128 (169)
Q Consensus 114 ~g~i~~~e~~~~l~~ 128 (169)
.|.++.+||..++..
T Consensus 28 ~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 28 SGKLRGEEINSLLEA 42 (75)
T ss_pred cCcccHHHHHHHHHH
Confidence 455555555555543
No 196
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=53.04 E-value=52 Score=20.28 Aligned_cols=30 Identities=17% Similarity=0.450 Sum_probs=27.2
Q ss_pred CcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 116 KISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 116 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
.||.+++..+|...|..+.+.-+..+...+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL 45 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAAL 45 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 799999999999999999988888888776
No 197
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=52.70 E-value=31 Score=17.52 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038366 120 GDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMM 162 (169)
Q Consensus 120 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l 162 (169)
+|....|..+| +++.++..++..+.. ...++-++.++..
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 56778888888 789999999988865 4446677766543
No 198
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=52.21 E-value=49 Score=19.72 Aligned_cols=78 Identities=19% Similarity=0.359 Sum_probs=38.7
Q ss_pred CCCcccHHHHHHH---HHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhc-CcchH-HHHHHHHhHhccCCC
Q 038366 40 GSGTIDAKELNVA---MRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIG-ERDSK-EELMKAFHIIDQDNN 114 (169)
Q Consensus 40 ~~g~l~~~e~~~~---l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~-~~~~~-~~~~~~f~~~D~~~~ 114 (169)
-||.++..|...+ +.... .+..+...+...+........++.+|...+..... .+..+ .-+..++... --|
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA--~AD 87 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMG--LDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIA--YAD 87 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHc
Confidence 3677777776554 33332 22333333333332222223677787777765432 22222 2334444443 235
Q ss_pred CCcCHHH
Q 038366 115 GKISAGD 121 (169)
Q Consensus 115 g~i~~~e 121 (169)
|.++..|
T Consensus 88 G~~~~~E 94 (106)
T cd07316 88 GELSEAE 94 (106)
T ss_pred CCCCHHH
Confidence 7888877
No 199
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=52.16 E-value=64 Score=21.06 Aligned_cols=41 Identities=15% Similarity=0.406 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHH----------HhccCCCCcccHHHHHHHH
Q 038366 122 IKRIARELGVNFTDREIHEMVE----------EADRDHDGEVNADEFIRMM 162 (169)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~----------~~d~d~~g~i~~~ef~~~l 162 (169)
+.+-++.+|..++++|+..++. .+-.+..|..+...|.+++
T Consensus 95 l~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 95 LEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 4455667788888888877771 1223567888888777653
No 200
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.41 E-value=63 Score=20.75 Aligned_cols=89 Identities=16% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcch-------------------HHHHHHHHhH
Q 038366 48 ELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDS-------------------KEELMKAFHI 108 (169)
Q Consensus 48 e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~-------------------~~~~~~~f~~ 108 (169)
.+.+++...+..++.+++....+.=+..|-....-.....++..++..... -..++.+|..
T Consensus 20 ~lv~i~~~~n~~~t~edv~~yLkKedeeGfq~cpd~~l~~fL~GLI~qkRGkde~~P~p~ve~~inNNivLkKLRiAf~l 99 (155)
T COG4807 20 DLVRILALGNVEATAEDVAVYLKKEDEEGFQRCPDIVLSSFLNGLIYQKRGKDESAPAPEVERRINNNIVLKKLRIAFSL 99 (155)
T ss_pred HHHHHHHhcCcccCHHHHHHHHHHhhHhHHhhCcHHHHHHHhcchheeecccccCCCCCcceeeecchhhHHhHhHhhhc
Confidence 355666666666666666665555433332222222333333333211111 1234445543
Q ss_pred hccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 109 IDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 109 ~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
-+ .++..++...+..++..|+..+|+.-
T Consensus 100 K~---------~Dm~~I~~~~~f~vS~pElsAlfR~~ 127 (155)
T COG4807 100 KT---------DDMLAILTEQQFRVSMPELSALFRAP 127 (155)
T ss_pred cc---------chHHHHHhccCcccccHHHHHHHhCC
Confidence 32 35778888888888999999888754
No 201
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=51.20 E-value=84 Score=26.65 Aligned_cols=97 Identities=16% Similarity=0.253 Sum_probs=66.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhh------------cC
Q 038366 28 EIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKI------------GE 95 (169)
Q Consensus 28 ~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~------------~~ 95 (169)
.+.=.++.||+..+|.|..-+|+-.+-.+...+.++....+|..+...+. .++-..|-.++...+ +.
T Consensus 471 ~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~s-q~~q~~l~lLL~dliqipr~lGE~aAfGg 549 (966)
T KOG4286|consen 471 CLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTS-QCDQRRLGLLLHDLIQIPRQLGEVAAFGG 549 (966)
T ss_pred HHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchh-hHHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 34445788999999999999999999888887788888899999865543 344555555544332 22
Q ss_pred cchHHHHHHHHhHhccCCCCCcCHHHHHHHHH
Q 038366 96 RDSKEELMKAFHIIDQDNNGKISAGDIKRIAR 127 (169)
Q Consensus 96 ~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~ 127 (169)
....-.++.-|.. ..+.-.|+...|..++.
T Consensus 550 sNvepsvrsCF~~--v~~~pei~~~~f~dw~~ 579 (966)
T KOG4286|consen 550 SNIEPSVRSCFQF--VNNKPEIEAALFLDWMR 579 (966)
T ss_pred CCCChHHHHHHHh--cCCCCcchHHHHHHHhc
Confidence 2333456777773 35566677777766654
No 202
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=50.52 E-value=50 Score=19.53 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=18.9
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 038366 117 ISAGDIKRIARELGVNFTDREIHEMVEE 144 (169)
Q Consensus 117 i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 144 (169)
||.+++.++.+-....+++++++.+...
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4667777777777777787776554443
No 203
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=50.04 E-value=32 Score=22.62 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 038366 24 QKKQEIKEAFELFDTDGSGTIDAKELNVAMRA 55 (169)
Q Consensus 24 ~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~ 55 (169)
.++..+.+.....|..+.++||.++++.++-.
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHH
Confidence 45666777777788888888999999887644
No 204
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=49.98 E-value=43 Score=21.72 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=19.8
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 038366 117 ISAGDIKRIARELGVNFTDREIHEMVEEADR 147 (169)
Q Consensus 117 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 147 (169)
.|.++++.+...++.++|++++..+++.++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4566666665555555677777777776655
No 205
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=49.91 E-value=20 Score=21.90 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=25.5
Q ss_pred CCcCHHHHHHHHHHhCCCCCHHHH---HHHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 115 GKISAGDIKRIARELGVNFTDREI---HEMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 115 g~i~~~e~~~~l~~~~~~~~~~~~---~~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
..+|.+|+..++...|. .+-+ ...++....+....++-++++++|..+|
T Consensus 34 ~p~s~~eL~~~l~~~g~---~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p 85 (105)
T cd03035 34 DGLDAATLERWLAKVGW---ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHP 85 (105)
T ss_pred CCCCHHHHHHHHHHhCh---HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCc
Confidence 45677777777776661 1111 1123333222223466777777777665
No 206
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=48.81 E-value=69 Score=20.40 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHHH
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIARE 128 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~~ 128 (169)
+..++..||++++|.|+.-.++..+..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 556778899999999999888877654
No 207
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=48.69 E-value=38 Score=26.48 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=14.8
Q ss_pred CHHHHHHHHHhHccCCCCcccHHHHHHHHH
Q 038366 61 TEEQINQMIADVDKDGSGAIDLDEFEHMMT 90 (169)
Q Consensus 61 ~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~ 90 (169)
..+.+..|-+.+|-+.+|.|+.+|=-.++.
T Consensus 66 g~EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 66 GYEAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred hHHHHHHHHHhcccccCCCcccccchHHHH
Confidence 344445555555555555555554444443
No 208
>PRK10945 gene expression modulator; Provisional
Probab=48.60 E-value=50 Score=18.71 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=4.9
Q ss_pred cCHHHHHHHHH
Q 038366 117 ISAGDIKRIAR 127 (169)
Q Consensus 117 i~~~e~~~~l~ 127 (169)
++..|+..+..
T Consensus 35 L~~~E~~~f~~ 45 (72)
T PRK10945 35 LSDDELAVFYS 45 (72)
T ss_pred CCHHHHHHHHH
Confidence 44444444444
No 209
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=48.37 E-value=55 Score=26.11 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHH
Q 038366 21 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKE 100 (169)
Q Consensus 21 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~ 100 (169)
+.....+....+|..+-+.+...|+..++..++.++|......+-...|...+.. ..-+.|..+.......+. ..+
T Consensus 479 l~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s-~~gv~yl~v~~~i~sel~---D~d 554 (612)
T COG5069 479 LVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGS-VSGVFYLDVLKGIHSELV---DYD 554 (612)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccc-cccchHHHHHHHHhhhhc---Chh
Confidence 3445566667778777666777899999999999998876655544455433222 113556655555544433 345
Q ss_pred HHHHHHhHhccCCC
Q 038366 101 ELMKAFHIIDQDNN 114 (169)
Q Consensus 101 ~~~~~f~~~D~~~~ 114 (169)
.+..+|..++.-.+
T Consensus 555 ~v~~~~~~f~diad 568 (612)
T COG5069 555 LVTRGFTEFDDIAD 568 (612)
T ss_pred hhhhhHHHHHHhhh
Confidence 56666666644333
No 210
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.74 E-value=63 Score=21.13 Aligned_cols=49 Identities=16% Similarity=0.399 Sum_probs=24.5
Q ss_pred CCCcCHHHH---HHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 114 NGKISAGDI---KRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 114 ~g~i~~~e~---~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
||.++..|. +.+++. ...++.+++..++.....-+...+++-.|...|.
T Consensus 42 DG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 42 DGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred ccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455665553 333332 1225666666666555444445555555555443
No 211
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=46.80 E-value=74 Score=24.05 Aligned_cols=42 Identities=14% Similarity=0.406 Sum_probs=24.1
Q ss_pred CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHH
Q 038366 114 NGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRM 161 (169)
Q Consensus 114 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~ 161 (169)
.|.||++|-...++......+++.++.+++.++ ||-+||.++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 466666666666655544445566666666653 455555554
No 212
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=46.62 E-value=57 Score=18.84 Aligned_cols=42 Identities=17% Similarity=0.405 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhccC-CCCcccHHHHHHHH
Q 038366 119 AGDIKRIARELGVNFTDREIHEMVEEADRD-HDGEVNADEFIRMM 162 (169)
Q Consensus 119 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d-~~g~i~~~ef~~~l 162 (169)
.+++.+.|. |...+.+.+...+...+.+ --+.++-+|++++|
T Consensus 44 i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 455555554 6677888888888877443 33578888887764
No 213
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=46.53 E-value=45 Score=22.69 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=23.5
Q ss_pred cCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 038366 111 QDNNGKISAGDIKRIARELGVNFTDREIHEMVEE 144 (169)
Q Consensus 111 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 144 (169)
.+.+|++..++|...++.-+..++.+++..+...
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES 61 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc
Confidence 4567788887777777655555777777777654
No 214
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=45.52 E-value=27 Score=21.69 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=6.1
Q ss_pred CcccHHHHHHHHH
Q 038366 42 GTIDAKELNVAMR 54 (169)
Q Consensus 42 g~l~~~e~~~~l~ 54 (169)
..|+..|+...+.
T Consensus 11 eiIt~sel~~~~~ 23 (118)
T PF09312_consen 11 EIITQSELEQRLA 23 (118)
T ss_dssp SEEEHHHHHHHHH
T ss_pred cCcCHHHHHHHHH
Confidence 3445555544443
No 215
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=45.22 E-value=64 Score=19.02 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=40.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHH
Q 038366 41 SGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTA 91 (169)
Q Consensus 41 ~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~ 91 (169)
.-.+.-.+|...|.....-....+...+-..+|...++.|+.=||--+.+.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRl 70 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRL 70 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHH
Confidence 357999999999999877767778888999999999999998887666543
No 216
>PRK01844 hypothetical protein; Provisional
Probab=43.98 E-value=61 Score=18.42 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=28.7
Q ss_pred CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 114 NGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 114 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
+-.|+.+-++..+...|..+++..+..+.+.+
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45799999999999999999999999998876
No 217
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=43.96 E-value=70 Score=19.09 Aligned_cols=10 Identities=0% Similarity=0.053 Sum_probs=4.1
Q ss_pred CCCCcccHHH
Q 038366 148 DHDGEVNADE 157 (169)
Q Consensus 148 d~~g~i~~~e 157 (169)
.+.+.|+..-
T Consensus 69 ~~~~~Ip~~~ 78 (90)
T PF02337_consen 69 QGPEKIPIQA 78 (90)
T ss_dssp CSTTTS-CHH
T ss_pred hCCCCCChhH
Confidence 4445554443
No 218
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.32 E-value=1.1e+02 Score=20.97 Aligned_cols=106 Identities=15% Similarity=0.163 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhH----ccCCCCcccHHHHHHHHHHhhc----
Q 038366 23 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADV----DKDGSGAIDLDEFEHMMTAKIG---- 94 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~----~~~~~~~i~~~ef~~~~~~~~~---- 94 (169)
......+++.|..||+..--.++.+++..++..-++-.+...+..+.... +.... ++.+|+-.+.....
T Consensus 49 L~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e---sf~~ylW~fv~~~Pi~~~ 125 (179)
T TIGR00624 49 LRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN---DLVEFLWSFVNHQPQPRQ 125 (179)
T ss_pred HHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc---cHHHHHHhccCCCCccCC
Confidence 35567789999999999888999999999998877765555555444321 11111 67777655421110
Q ss_pred ------CcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCC
Q 038366 95 ------ERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGV 131 (169)
Q Consensus 95 ------~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 131 (169)
.+.....-..+.+.+-+.|-..+...-.-.+|++.|.
T Consensus 126 ~~~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 126 RPTDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred ccccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 0111122344445555556666666666666666663
No 219
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=42.17 E-value=77 Score=20.97 Aligned_cols=84 Identities=15% Similarity=0.315 Sum_probs=51.2
Q ss_pred HHHHHHHHhh----CCCCC-CcccHHHHHHHHHHcCC----CCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhh----
Q 038366 27 QEIKEAFELF----DTDGS-GTIDAKELNVAMRALGF----EMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKI---- 93 (169)
Q Consensus 27 ~~~~~~f~~~----D~~~~-g~l~~~e~~~~l~~~~~----~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~---- 93 (169)
..+.+.|+.| |+..+ -.|+-..+..+++..+. .++.-+..-.|..+.-...+.++|++|...+..+.
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~ 91 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRF 91 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhh
Confidence 3344455544 23323 35777778888877543 35555555666666555677899999977776543
Q ss_pred cCcchHHHHHHHHhHhc
Q 038366 94 GERDSKEELMKAFHIID 110 (169)
Q Consensus 94 ~~~~~~~~~~~~f~~~D 110 (169)
.....++.+..++..+.
T Consensus 92 k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 92 KGKSKEEALDAICQLLA 108 (180)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 23444566777776653
No 220
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=41.00 E-value=81 Score=18.99 Aligned_cols=30 Identities=13% Similarity=0.386 Sum_probs=21.8
Q ss_pred CcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 116 KISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 116 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
.|+.+++.++.+-....+++++.+.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 478888888877777778888777655443
No 221
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=40.97 E-value=77 Score=18.73 Aligned_cols=28 Identities=14% Similarity=0.436 Sum_probs=20.1
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 038366 117 ISAGDIKRIARELGVNFTDREIHEMVEE 144 (169)
Q Consensus 117 i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 144 (169)
|+.+++..+.+-....++++++..+...
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 7778888888777777888776555443
No 222
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=40.65 E-value=64 Score=20.03 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q 038366 119 AGDIKRIARELGVNFTDREIHEMVE 143 (169)
Q Consensus 119 ~~e~~~~l~~~~~~~~~~~~~~~~~ 143 (169)
.+|++.++-.....+++++++.++.
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd 105 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILD 105 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4444444444444445555554444
No 223
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=40.40 E-value=81 Score=18.85 Aligned_cols=81 Identities=15% Similarity=0.287 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHH
Q 038366 46 AKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRI 125 (169)
Q Consensus 46 ~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~ 125 (169)
..++...++.....++...+..+.+.....+-+.--.+++..++.... .+....+-......+.-+|+.+|+...
T Consensus 6 ~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~Rvs~~A~~~l~~~~e~~~-----~~i~~~A~~~A~ha~RKTV~~~DI~la 80 (91)
T COG2036 6 LKEIRRYQRSTDLLLPKAPVRRILRKAGAERVSSSAIEELQEALEEYL-----EEIAEDAVELAEHAKRKTVKAEDIKLA 80 (91)
T ss_pred HHHHHhhhhhhhhhcCchHHHHHHHHHhHHHhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 344455555555555555566666655443222222333333333221 123334444456677788999999988
Q ss_pred HHHhCC
Q 038366 126 ARELGV 131 (169)
Q Consensus 126 l~~~~~ 131 (169)
++..|.
T Consensus 81 ~~~~~~ 86 (91)
T COG2036 81 LKRLGR 86 (91)
T ss_pred HHHhcc
Confidence 887764
No 224
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=40.21 E-value=67 Score=21.98 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHc
Q 038366 37 DTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVD 73 (169)
Q Consensus 37 D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~ 73 (169)
..+.+|.+..+++...+..-+..++.+++..+...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4677999999999999988777788889888887643
No 225
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=40.13 E-value=57 Score=16.97 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=19.7
Q ss_pred CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Q 038366 114 NGKISAGDIKRIARELGVNFTDREIHEMVEEADRD 148 (169)
Q Consensus 114 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d 148 (169)
.|.|+..+|+..+. ++-.-+-.++..+|..
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 57788877777764 5666666666666554
No 226
>PHA02105 hypothetical protein
Probab=40.11 E-value=62 Score=17.42 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=26.9
Q ss_pred CcCHHHHHHHHHHhC---CCCCHHHHHHHHHHhccCCCC--cccHHHHHHHH
Q 038366 116 KISAGDIKRIARELG---VNFTDREIHEMVEEADRDHDG--EVNADEFIRMM 162 (169)
Q Consensus 116 ~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~d~~g--~i~~~ef~~~l 162 (169)
.+|.+|+...+.... .++..+-++.+-..|..-.-. .++|+||...+
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 366777777766532 234455555555555444332 46888887765
No 227
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=39.67 E-value=44 Score=15.61 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=13.8
Q ss_pred CcCHHHHHHHHHHhCCCCC
Q 038366 116 KISAGDIKRIARELGVNFT 134 (169)
Q Consensus 116 ~i~~~e~~~~l~~~~~~~~ 134 (169)
.++..+++..+...|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4677888888888776543
No 228
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=39.61 E-value=1.6e+02 Score=23.63 Aligned_cols=60 Identities=18% Similarity=0.375 Sum_probs=42.5
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhH---cc-----CCCCcccHHHHHHHHHH
Q 038366 32 AFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADV---DK-----DGSGAIDLDEFEHMMTA 91 (169)
Q Consensus 32 ~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~---~~-----~~~~~i~~~ef~~~~~~ 91 (169)
+|..+-...++.+...-|..+|++.|+.-++..+..++..+ +. .....++.+-|......
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 46666554579999999999999999976666666555443 32 23567788888776643
No 229
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.35 E-value=56 Score=16.67 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCCcC-HHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 113 NNGKIS-AGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 113 ~~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
..|.|+ ..++-+-|...|..++++.++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 356776 333444455568888888888877653
No 230
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=39.02 E-value=68 Score=17.53 Aligned_cols=27 Identities=11% Similarity=0.340 Sum_probs=16.5
Q ss_pred cCHHHHHHHHHHhCC----CCCHHHHHHHHH
Q 038366 117 ISAGDIKRIARELGV----NFTDREIHEMVE 143 (169)
Q Consensus 117 i~~~e~~~~l~~~~~----~~~~~~~~~~~~ 143 (169)
|..+||...++..|. .++...+...+.
T Consensus 25 I~L~el~~~L~~~g~~~~~~~~~~~l~~~lD 55 (64)
T PF09494_consen 25 INLEELHAWLKASGIGFDRKVDPSKLKEWLD 55 (64)
T ss_pred ccHHHHHHHHHHcCCCccceeCHHHHHHHHH
Confidence 666777777776555 555555555553
No 231
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=38.55 E-value=26 Score=16.77 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=11.3
Q ss_pred CcCHHHHHHHHHHhCCCCC
Q 038366 116 KISAGDIKRIARELGVNFT 134 (169)
Q Consensus 116 ~i~~~e~~~~l~~~~~~~~ 134 (169)
.+++.+++.+|...|+.++
T Consensus 3 sltV~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEFP 21 (35)
T ss_dssp T--SHHHHHHHHHHT---S
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4677889999998876543
No 232
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=38.08 E-value=69 Score=18.04 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=11.3
Q ss_pred HHHHHHHHhCCCCCH-HHHHHHHHHh
Q 038366 121 DIKRIARELGVNFTD-REIHEMVEEA 145 (169)
Q Consensus 121 e~~~~l~~~~~~~~~-~~~~~~~~~~ 145 (169)
.+..++......+++ .++..+...+
T Consensus 18 TLEkv~e~~~y~L~~~~e~~~f~~Aa 43 (71)
T PRK10391 18 SLEKLFDHLNYTLTDDQEIINMYRAA 43 (71)
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHHH
Confidence 344444444444443 4444444443
No 233
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=37.75 E-value=47 Score=15.64 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=12.8
Q ss_pred cccHHHHHHHHHHcCCCCC
Q 038366 43 TIDAKELNVAMRALGFEMT 61 (169)
Q Consensus 43 ~l~~~e~~~~l~~~~~~~~ 61 (169)
.++..|++..++..|++.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 4667778888887777643
No 234
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=36.96 E-value=90 Score=18.37 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCC
Q 038366 59 EMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVN 132 (169)
Q Consensus 59 ~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 132 (169)
.++...+..|.+..+...-+.--|++....+...+ .+-+..+-......+.-+|+.+|+.-.++..|.+
T Consensus 13 gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l-----~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYL-----EDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 45556666666654433222223555555554432 1333444444445667789999999999988754
No 235
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=36.78 E-value=1e+02 Score=19.04 Aligned_cols=40 Identities=15% Similarity=0.376 Sum_probs=31.2
Q ss_pred HHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 105 AFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 105 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
.+..+..-+. .||.+.++.+++..|..+.+.-+..+...+
T Consensus 6 a~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaL 45 (109)
T COG2058 6 AYLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAAL 45 (109)
T ss_pred HHHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHh
Confidence 3344443333 899999999999999999888888888776
No 236
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=36.72 E-value=67 Score=22.04 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=33.8
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHH
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEM 141 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 141 (169)
++.++.+|..||+++=-..+.+++..+|...|+.=...-++.+
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~ 96 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKAT 96 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHH
Confidence 4789999999999998899999999999987754344333333
No 237
>PF12987 DUF3871: Domain of unknown function, B. Theta Gene description (DUF3871); InterPro: IPR024353 This entry represents proteins of unknown function found primarily in Bacteroides species. The B. thetaiotaomicron gene appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].
Probab=36.12 E-value=1.8e+02 Score=21.70 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=38.6
Q ss_pred CCCCcCHHHHHHHHHHhC---------------CCCCHHHHHHHHHHhccC-----CCCcccHHHHHHHHHh
Q 038366 113 NNGKISAGDIKRIARELG---------------VNFTDREIHEMVEEADRD-----HDGEVNADEFIRMMKR 164 (169)
Q Consensus 113 ~~g~i~~~e~~~~l~~~~---------------~~~~~~~~~~~~~~~d~d-----~~g~i~~~ef~~~l~~ 164 (169)
++-.||..+|.+++-++. ..+++..+..+.+.+-.| .++.|+.+.|.+++..
T Consensus 214 ~~t~ltE~QFaQiiGR~RLYQ~LP~~~qk~lP~ll~tD~qiN~vak~Y~~d~nF~~~~~~Is~W~~ynLlT~ 285 (323)
T PF12987_consen 214 GDTSLTEHQFAQIIGRMRLYQALPQGEQKRLPRLLITDSQINTVAKAYYNDENFGRKGGEISMWNFYNLLTG 285 (323)
T ss_pred ccCcccHHHHHHHHhHHHHHHhCCHhHHhhCCceecchHHHHHHHHHHhcCcccccCCCcccHHHHHHHHhc
Confidence 467899999988877541 235788888888766333 3678999999999866
No 238
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=35.58 E-value=68 Score=16.52 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 038366 19 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIAD 71 (169)
Q Consensus 19 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~ 71 (169)
..++..+...|...|.. +...+..+...+...+| ++...|..-|..
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 46788999999999977 55788888888888877 455666666654
No 239
>PF13551 HTH_29: Winged helix-turn helix
Probab=35.31 E-value=1e+02 Score=18.38 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHH--HHcCCCCCHHHHHHHHHh
Q 038366 21 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAM--RALGFEMTEEQINQMIAD 71 (169)
Q Consensus 21 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l--~~~~~~~~~~~~~~l~~~ 71 (169)
+++++...+.+.+...-..+.+..+...+...+ ...+..++...+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 788888888888876544433578888888855 344667888777777664
No 240
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=34.29 E-value=1.5e+02 Score=21.36 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 18 HHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 18 ~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
.+.+++.+...+.+-|...=.+..|.+-..|.--++..-...++..++..-...+. ...|.|.+|+..+...
T Consensus 11 ~q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 82 (257)
T PRK14074 11 QQGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDIK---ESLIAYSDFLEDLTKI 82 (257)
T ss_pred cccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHHH---HHHHHHHHHHHHHHHH
Confidence 36789999999999998887888899988888888777666677776655444432 3468888888876544
No 241
>COG5562 Phage envelope protein [General function prediction only]
Probab=33.86 E-value=39 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=16.6
Q ss_pred HHhccCCCCcccHHHHHHHHHh
Q 038366 143 EEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 143 ~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
.....+..|+.+|+||+..+-.
T Consensus 79 ~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred HHHHHHhcCCccHHHHHHHHHh
Confidence 3334578899999999988754
No 242
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=33.57 E-value=85 Score=17.07 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=20.5
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHH
Q 038366 117 ISAGDIKRIARELGVNFTDREIHEM 141 (169)
Q Consensus 117 i~~~e~~~~l~~~~~~~~~~~~~~~ 141 (169)
.+.+++..+.+..|..+|.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4477888899999999999988764
No 243
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=33.53 E-value=1e+02 Score=17.92 Aligned_cols=45 Identities=7% Similarity=0.245 Sum_probs=31.6
Q ss_pred CHHHHHHHHHH----hCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 118 SAGDIKRIARE----LGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 118 ~~~e~~~~l~~----~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
+...++++++. .|.+++++..+.+...+-.++- ..++..+..+|.
T Consensus 29 dE~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 29 DEKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred cHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 33445555554 4788898888888888766665 677777777765
No 244
>PTZ00015 histone H4; Provisional
Probab=33.41 E-value=1.2e+02 Score=18.63 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=42.1
Q ss_pred HHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCC
Q 038366 53 MRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVN 132 (169)
Q Consensus 53 l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 132 (169)
++.....++...+..|.+..+...-+..-|++....+...+ .+.+..+-......+.-+|+.+|+...++..|..
T Consensus 24 ~r~~i~gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l-----~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~~ 98 (102)
T PTZ00015 24 LRDNIRGITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFL-----ENVVRDSTAYTEYARRKTVTAMDVVYALKRQGRT 98 (102)
T ss_pred HhhcccCCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCC
Confidence 33333345555566666655444433344555555554432 1334444444445567789999999999887753
No 245
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=32.83 E-value=1.2e+02 Score=18.63 Aligned_cols=30 Identities=17% Similarity=0.403 Sum_probs=26.9
Q ss_pred CcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 116 KISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 116 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
.||.+.+..+|...|..+.+..+..+...+
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L 45 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAAL 45 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 799999999999999888888888888777
No 246
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=32.63 E-value=1.6e+02 Score=19.90 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCC
Q 038366 20 GLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEM 60 (169)
Q Consensus 20 ~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~ 60 (169)
.++++-..++.++|..+-.+ ++-+..+++..++..+.++.
T Consensus 7 ki~~EiEDEILe~Ya~~~~~-~~D~~l~~Lp~~f~~L~IP~ 46 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYTED-EQDMTLKDLPNYFEDLQIPK 46 (170)
T ss_pred cCChHHHHHHHHHHHHhcCC-ccceeHHHHHHHHHHcCCCh
Confidence 56777777888888877443 77899999999999988763
No 247
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=32.63 E-value=51 Score=15.32 Aligned_cols=14 Identities=21% Similarity=0.672 Sum_probs=8.4
Q ss_pred CCcccHHHHHHHHH
Q 038366 150 DGEVNADEFIRMMK 163 (169)
Q Consensus 150 ~g~i~~~ef~~~l~ 163 (169)
.|.|++++++.+..
T Consensus 2 ~~~i~~~~~~d~a~ 15 (33)
T PF09373_consen 2 SGTISKEEYLDMAS 15 (33)
T ss_pred CceecHHHHHHHHH
Confidence 35666666666554
No 248
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=32.52 E-value=1.2e+02 Score=18.66 Aligned_cols=31 Identities=13% Similarity=0.452 Sum_probs=27.3
Q ss_pred CcCHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 038366 116 KISAGDIKRIARELGVNFTDREIHEMVEEAD 146 (169)
Q Consensus 116 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 146 (169)
.||.+.+..+|...|..+.+..+..+...+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~ 46 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 7999999999999998888888888888773
No 249
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=32.49 E-value=71 Score=18.49 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHH
Q 038366 121 DIKRIARELGVNFTDREIHEMV 142 (169)
Q Consensus 121 e~~~~l~~~~~~~~~~~~~~~~ 142 (169)
|+-..|+.+|..+++++...+-
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~ 42 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLE 42 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHH
Confidence 4566788889999988865544
No 250
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=32.47 E-value=1.2e+02 Score=20.63 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=32.8
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHH
Q 038366 38 TDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLD 83 (169)
Q Consensus 38 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ 83 (169)
-+.+|.+..+++...++.-+...+.+.+.++... +..++..++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~---d~K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES---DDKGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc---CCCcceEec
Confidence 4679999999999998866666888888888764 445555554
No 251
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=32.44 E-value=93 Score=24.47 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=15.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 038366 27 QEIKEAFELFDTDGSGTIDAKELNVAMRA 55 (169)
Q Consensus 27 ~~~~~~f~~~D~~~~g~l~~~e~~~~l~~ 55 (169)
+.++.+.+.+|-+.+|.|+.+|=..+|+.
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHH
Confidence 34555555555555555555555555443
No 252
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=32.22 E-value=49 Score=15.22 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=5.0
Q ss_pred cCHHHHHHHHH
Q 038366 117 ISAGDIKRIAR 127 (169)
Q Consensus 117 i~~~e~~~~l~ 127 (169)
||.+||++++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555554
No 253
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=31.96 E-value=54 Score=20.41 Aligned_cols=31 Identities=6% Similarity=0.276 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHhccCCCCcccHHHHHHHH
Q 038366 132 NFTDREIHEMVEEADRDHDGEVNADEFIRMM 162 (169)
Q Consensus 132 ~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l 162 (169)
.++.+|-..+...++.=.+|.|++...+.+|
T Consensus 65 ~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L 95 (117)
T PF08349_consen 65 KLSSEEKQHFLDLIEDYREGKIPLSVPLTLL 95 (117)
T ss_pred hCCHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 3455554444444444445555554444443
No 254
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=31.87 E-value=1.1e+02 Score=17.80 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=25.1
Q ss_pred HHHHh-CCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 125 IAREL-GVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 125 ~l~~~-~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
+|... |..++++..+.+-+.++.-....|+++|++-+...
T Consensus 37 WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 37 WLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44433 55567666666666665555566888888776554
No 255
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=31.78 E-value=45 Score=17.95 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhc
Q 038366 119 AGDIKRIARELGVNFTDREIHEMVEEAD 146 (169)
Q Consensus 119 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d 146 (169)
.+.+..++......++.+++..+...+|
T Consensus 9 ~dtLEkv~e~~~~~L~~~e~~~f~~AaD 36 (57)
T PF05321_consen 9 LDTLEKVIEHNRYKLTDDELEAFNSAAD 36 (57)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HhhHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 3445555555555566666666665554
No 256
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.65 E-value=1.2e+02 Score=18.08 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=42.5
Q ss_pred HHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcCC
Q 038366 103 MKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTF 167 (169)
Q Consensus 103 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~~ 167 (169)
..++..+ =+.|.+|.++...+-...+..-..+.+..++.... .|.=-|..|+.+|+.+..
T Consensus 22 ~~v~d~l--l~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~---rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 22 RDVCDKC--LEQGLLTEEDRNRIEAATENHGNESGARELLKRIV---QKEGWFSKFLQALRETEH 81 (88)
T ss_pred HHHHHHH--HhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc---cCCcHHHHHHHHHHHcCc
Confidence 3444444 23578999888888776555567888888888886 445578899999887643
No 257
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=31.41 E-value=95 Score=16.94 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=12.0
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHHHh
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIAREL 129 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 129 (169)
++...+|..+- +|.++..++-.+|..+
T Consensus 18 ~e~~~~~~~i~---~g~~s~~qiaAfL~al 44 (66)
T PF02885_consen 18 EEAKAAFDAIL---DGEVSDAQIAAFLMAL 44 (66)
T ss_dssp HHHHHHHHHHH---TTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 44444444441 2445555555554443
No 258
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=31.20 E-value=1.6e+02 Score=22.22 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=43.2
Q ss_pred HHHHH--HHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHH
Q 038366 49 LNVAM--RALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIA 126 (169)
Q Consensus 49 ~~~~l--~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l 126 (169)
|...+ ...|......++...++ .|.|+-+|=+..+... ....+.+.+..+++.++ ||.+||..++
T Consensus 276 ~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~-d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 276 FHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKEY-DGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHh-cccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 54443 34677655555444443 4789999999888873 33334577888888886 6777887765
No 259
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=31.15 E-value=92 Score=16.74 Aligned_cols=53 Identities=15% Similarity=0.448 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccH
Q 038366 21 LSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDL 82 (169)
Q Consensus 21 ~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 82 (169)
+++.....++.+|..-. ..+.++..++...|. .+...+..+++.+.. .|.|.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~-----vs~~tvt~ml~~L~~--~GlV~~ 54 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG-----VSPPTVTEMLKRLAE--KGLVEY 54 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT-----S-HHHHHHHHHHHHH--TTSEEE
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC-----CChHHHHHHHHHHHH--CCCEEe
Confidence 56677788888988875 678899999988885 466677777777643 344443
No 260
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=31.10 E-value=61 Score=23.70 Aligned_cols=37 Identities=22% Similarity=0.365 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcCCCC
Q 038366 133 FTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFGY 169 (169)
Q Consensus 133 ~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~~~~ 169 (169)
+|++|++.+++.+-.+.....+.++..+-+.....||
T Consensus 225 FT~~Ev~~ll~~~~~~~~~~~~~~~~~~~lk~wYdGY 261 (284)
T PF09820_consen 225 FTEEEVETLLKYYIENLAEEQDREELLEELKEWYDGY 261 (284)
T ss_pred cCHHHHHHHHHHHHHHhhhccchHHHHHHHHHHcCCc
Confidence 8999999999988555544447778888777777776
No 261
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=30.38 E-value=1.4e+02 Score=21.23 Aligned_cols=47 Identities=13% Similarity=0.340 Sum_probs=36.5
Q ss_pred CHHHHHHHHH----HhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 118 SAGDIKRIAR----ELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 118 ~~~e~~~~l~----~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
+.++++.++. ..+..++++++..+...+..=.+-.+++.+|.+-|.+
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7788776655 4588899999999888887766677888888887754
No 262
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=30.30 E-value=1.4e+02 Score=18.62 Aligned_cols=47 Identities=11% Similarity=0.211 Sum_probs=34.3
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHH
Q 038366 36 FDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEH 87 (169)
Q Consensus 36 ~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~ 87 (169)
....++..+|..++..+|.+.|..+....+..++..+.. .+..+.+.
T Consensus 12 ~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 12 CVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 334455668899999999999988888777777777632 55666665
No 263
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.93 E-value=1.4e+02 Score=23.30 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=33.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHH
Q 038366 29 IKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHM 88 (169)
Q Consensus 29 ~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~ 88 (169)
..++|..+-+ -+|.|+-..-+..|-. ..++...+-.+|...|.+++|.++-+||.-+
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHHh--ccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 4455655533 3566665555555433 2345556667777777777777777776543
No 264
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=29.80 E-value=1.5e+02 Score=18.67 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 113 NNGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 113 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
..|.++.+++..-+...+..++.+++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 357788888877666556667887777776654
No 265
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=29.79 E-value=1.1e+02 Score=17.71 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=15.7
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 038366 117 ISAGDIKRIARELGVNFTDREIHEMVE 143 (169)
Q Consensus 117 i~~~e~~~~l~~~~~~~~~~~~~~~~~ 143 (169)
|+..+.+.+.+.+| +++.+++.+-.
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~ie~ 33 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERVEL 33 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 56666777777777 56666555543
No 266
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=29.56 E-value=1.3e+02 Score=18.02 Aligned_cols=47 Identities=11% Similarity=0.284 Sum_probs=27.7
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 113 NNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 113 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
++|.+|.++...+-. ...+.+.+..++... -.-|.--|..|+++|..
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiL--p~RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDIL--PSRGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHH--HhhChhHHHHHHHHHHH
Confidence 356777777655543 123445555565554 34455677777777765
No 267
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=29.45 E-value=90 Score=16.09 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038366 18 HHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIA 70 (169)
Q Consensus 18 ~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~ 70 (169)
...++..++..|...|.. +...+..+...+...+| ++...|...|.
T Consensus 4 r~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 4 RTRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp SSSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 356899999999999985 56778888888888776 44556665554
No 268
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=29.34 E-value=1.9e+02 Score=22.91 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcC
Q 038366 23 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALG 57 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~ 57 (169)
.++...+..++ .+.....+.-|.+||.+.+....
T Consensus 285 ~~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~~ 318 (445)
T PF13608_consen 285 EKEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEEVN 318 (445)
T ss_pred HHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHhcC
Confidence 34555666667 66556678889999999998644
No 269
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.33 E-value=1.6e+02 Score=23.45 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=34.5
Q ss_pred HHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhcCCC
Q 038366 126 ARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFG 168 (169)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~~~~ 168 (169)
|+.-|..++++.-.++|+...--++..+.|.|+..++..+.+|
T Consensus 141 m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~ 183 (625)
T KOG4422|consen 141 MRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG 183 (625)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc
Confidence 4455888999999999988877777778899999998877665
No 270
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=28.91 E-value=61 Score=22.21 Aligned_cols=48 Identities=19% Similarity=0.368 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038366 23 QQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIA 70 (169)
Q Consensus 23 ~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~ 70 (169)
....+.+++.|..||+.+--.++..++..+|...|+-.+...|..+..
T Consensus 51 L~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~ 98 (188)
T COG2818 51 LKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATIN 98 (188)
T ss_pred HHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHH
Confidence 345677999999999999999999999999998888666555555443
No 271
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=28.69 E-value=1.6e+02 Score=22.27 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=47.9
Q ss_pred HHHHHHHHh--hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHH
Q 038366 27 QEIKEAFEL--FDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMK 104 (169)
Q Consensus 27 ~~~~~~f~~--~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 104 (169)
.+|..+... .|.|....+--++|......+.......-+.-+.+.|-..=.|.+=|+|...-+... ...+..
T Consensus 41 ~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~------nP~lae 114 (357)
T PLN02508 41 AEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT------NPVVAE 114 (357)
T ss_pred HHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC------ChHHHH
Confidence 344444443 377777888888887755543322333445556666655557777777755533221 256778
Q ss_pred HHhHhccCC
Q 038366 105 AFHIIDQDN 113 (169)
Q Consensus 105 ~f~~~D~~~ 113 (169)
+|..+..|.
T Consensus 115 ~F~lMaRDE 123 (357)
T PLN02508 115 IFTLMSRDE 123 (357)
T ss_pred HHHHhCchh
Confidence 888876654
No 272
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=28.55 E-value=1.8e+02 Score=23.65 Aligned_cols=46 Identities=9% Similarity=0.317 Sum_probs=34.2
Q ss_pred HHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Q 038366 103 MKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRD 148 (169)
Q Consensus 103 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d 148 (169)
..+.-..+..+.|.++.+|..++|..+...-..-++.++++++..|
T Consensus 458 ~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 458 RDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcc
Confidence 3444455777888899999999999887666666777888777554
No 273
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.96 E-value=1.4e+02 Score=22.65 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=45.9
Q ss_pred HHHHHHHHh--hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHH
Q 038366 27 QEIKEAFEL--FDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMK 104 (169)
Q Consensus 27 ~~~~~~f~~--~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 104 (169)
.+|..+... .|.|....+--++|......+.......-+.-+.+.|-..=.|.+=|+|...-+... ...+..
T Consensus 45 ~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~------nP~lae 118 (355)
T PRK13654 45 EELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR------NPLLAE 118 (355)
T ss_pred HHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc------CcHHHH
Confidence 344444443 367777888888887755443323333345555555554456666666654433221 246778
Q ss_pred HHhHhccCC
Q 038366 105 AFHIIDQDN 113 (169)
Q Consensus 105 ~f~~~D~~~ 113 (169)
+|..+..|.
T Consensus 119 ~F~lMaRDE 127 (355)
T PRK13654 119 LFQLMARDE 127 (355)
T ss_pred HHHHHhhhH
Confidence 888876653
No 274
>PRK10026 arsenate reductase; Provisional
Probab=27.92 E-value=1.8e+02 Score=18.97 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCcCHHHHHHHHHHhCCCCCHHHH-H---HHHHHhccCCCCcccHHHHHHHHHhcC
Q 038366 115 GKISAGDIKRIARELGVNFTDREI-H---EMVEEADRDHDGEVNADEFIRMMKRTT 166 (169)
Q Consensus 115 g~i~~~e~~~~l~~~~~~~~~~~~-~---~~~~~~d~d~~g~i~~~ef~~~l~~~~ 166 (169)
..+|.+|+..++...|. ...++ . ..++....+. ..++.++.+.+|..+|
T Consensus 37 ~ppt~~eL~~~l~~~g~--~~~~lint~~~~yr~L~~~~-~~ls~~e~l~ll~~~P 89 (141)
T PRK10026 37 TPPTRDELVKLIADMGI--SVRALLRKNVEPYEELGLAE-DKFTDDQLIDFMLQHP 89 (141)
T ss_pred CCcCHHHHHHHHHhCCC--CHHHHHHcCCchHHHcCCCc-cCCCHHHHHHHHHhCc
Confidence 45777777777777662 21111 1 2344433333 2467777777776655
No 275
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.74 E-value=1.5e+02 Score=22.45 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=46.5
Q ss_pred HHHHHHHHHh--hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHH
Q 038366 26 KQEIKEAFEL--FDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELM 103 (169)
Q Consensus 26 ~~~~~~~f~~--~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~ 103 (169)
..++..+... .|.|....+--+||......+.......-+.-+.+.|-..=.|.+=|+|...-+... ...+.
T Consensus 40 ~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~------nP~la 113 (351)
T CHL00185 40 IEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK------NPLLA 113 (351)
T ss_pred HHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC------CcHHH
Confidence 3344444444 377777888888887755443222333344555555554456666666655433221 24677
Q ss_pred HHHhHhccCC
Q 038366 104 KAFHIIDQDN 113 (169)
Q Consensus 104 ~~f~~~D~~~ 113 (169)
.+|..+..|.
T Consensus 114 e~F~lMaRDE 123 (351)
T CHL00185 114 EGFLLMSRDE 123 (351)
T ss_pred HHHHHHhhhh
Confidence 7888776653
No 276
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=27.61 E-value=3e+02 Score=21.58 Aligned_cols=47 Identities=9% Similarity=0.043 Sum_probs=25.1
Q ss_pred CCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHH
Q 038366 112 DNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEF 158 (169)
Q Consensus 112 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef 158 (169)
..+..+.+..|++.|.......+--++..+-.-+|...++.|+--||
T Consensus 186 g~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEF 232 (563)
T KOG1785|consen 186 GKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEF 232 (563)
T ss_pred CCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehh
Confidence 44567777777777776532223334444444445555555544433
No 277
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=27.45 E-value=1.2e+02 Score=16.97 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=31.8
Q ss_pred HHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccC
Q 038366 101 ELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRD 148 (169)
Q Consensus 101 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d 148 (169)
-+..+|-.+-.+..+.|+...+..++..+| +++..+...+..+..+
T Consensus 5 li~tl~Gdy~~~~g~~i~~~~Li~ll~~~G--v~e~avR~alsRl~~~ 50 (70)
T PF07848_consen 5 LIVTLLGDYLRPRGGWIWVASLIRLLAAFG--VSESAVRTALSRLVRR 50 (70)
T ss_dssp HHHHHHHHHCCTTTS-EEHHHHHHHHCCTT----HHHHHHHHHHHHHT
T ss_pred ehHHHHHHHhccCCCceeHHHHHHHHHHcC--CChHHHHHHHHHHHHc
Confidence 345556555566778999999999999999 7888888777766443
No 278
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=27.45 E-value=2e+02 Score=19.52 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=22.1
Q ss_pred CcCHHHH----HHHHHHhCCCCCHHHHHHHHHHhccCCC
Q 038366 116 KISAGDI----KRIARELGVNFTDREIHEMVEEADRDHD 150 (169)
Q Consensus 116 ~i~~~e~----~~~l~~~~~~~~~~~~~~~~~~~d~d~~ 150 (169)
.||.+-| +++|++.| +.+++++.-++.++.|.+
T Consensus 54 NISqeKf~niQkk~mERYG--fd~~~iE~q~K~~Gid~~ 90 (186)
T PF12983_consen 54 NISQEKFLNIQKKFMERYG--FDPSEIEKQMKSMGIDMS 90 (186)
T ss_pred CCcHHHHHHHHHHHHHHhC--CCHHHHHHHHHHcCCCcc
Confidence 3566655 45677777 667788888887766643
No 279
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.18 E-value=49 Score=30.62 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=44.1
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCC----CHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNF----TDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
-+....++..+|++..|.|...++..++..+..++ .... +.+...+-...+|.|++.+-+-.+.+
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 46778899999999999999999999999863222 2222 33333444456667777766665544
No 280
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=26.16 E-value=90 Score=18.23 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=10.2
Q ss_pred hHhccCCCCCcCHHHHHHH
Q 038366 107 HIIDQDNNGKISAGDIKRI 125 (169)
Q Consensus 107 ~~~D~~~~g~i~~~e~~~~ 125 (169)
+.++.+.+|+|+.+-+..+
T Consensus 30 ~~~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 30 EQIEKSRDGYIDISLLVSF 48 (82)
T ss_pred HHhcCCCCCCEeHHHHhcc
Confidence 3445555667666544443
No 281
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=25.79 E-value=3.3e+02 Score=21.39 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=39.2
Q ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHH---HHHHHHhhcCcchHHHHHHHHhHhccCCCC---
Q 038366 42 GTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEF---EHMMTAKIGERDSKEELMKAFHIIDQDNNG--- 115 (169)
Q Consensus 42 g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef---~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g--- 115 (169)
..+....|.++|...+.-.+--+...+-..+|...++.|+.=|| .+++..+ ..+..-+..+....-|
T Consensus 189 ~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw-------~tllkNWq~LavtHPGYmA 261 (563)
T KOG1785|consen 189 TIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPW-------KTLLKNWQTLAVTHPGYMA 261 (563)
T ss_pred ccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccH-------HHHHHhhhhhhccCCceeE
Confidence 35566666666666554444455555555666666655543333 3332222 2333333333333333
Q ss_pred CcCHHHHHHHHHH
Q 038366 116 KISAGDIKRIARE 128 (169)
Q Consensus 116 ~i~~~e~~~~l~~ 128 (169)
++|++|++.-|+.
T Consensus 262 FLTYDEVk~RLqk 274 (563)
T KOG1785|consen 262 FLTYDEVKARLQK 274 (563)
T ss_pred EeeHHHHHHHHHH
Confidence 3566666655553
No 282
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=25.76 E-value=2e+02 Score=21.56 Aligned_cols=81 Identities=12% Similarity=0.191 Sum_probs=48.9
Q ss_pred HHHHHHHHh--hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHH
Q 038366 27 QEIKEAFEL--FDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMK 104 (169)
Q Consensus 27 ~~~~~~f~~--~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 104 (169)
.++..+... .|.|....+--++|......+.......-+.-+.+.|-..=.|.+=|+|...-+... ...+..
T Consensus 25 ~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~------nP~lae 98 (323)
T cd01047 25 EEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT------NPVVAE 98 (323)
T ss_pred HHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC------CcHHHH
Confidence 444455444 477888888888888865553333344445556666655556777776655433221 246778
Q ss_pred HHhHhccCC
Q 038366 105 AFHIIDQDN 113 (169)
Q Consensus 105 ~f~~~D~~~ 113 (169)
+|..+..|.
T Consensus 99 ~F~lMaRDE 107 (323)
T cd01047 99 LFRLMARDE 107 (323)
T ss_pred HHHHHhhhH
Confidence 888876654
No 283
>PLN00035 histone H4; Provisional
Probab=25.57 E-value=1.7e+02 Score=17.98 Aligned_cols=78 Identities=10% Similarity=0.108 Sum_probs=46.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHh
Q 038366 50 NVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIAREL 129 (169)
Q Consensus 50 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~ 129 (169)
...++..-..++...+..|.+..+...-+.--|+++...+...+ .+.+..+-......+.-+|+.+|+.-.++..
T Consensus 20 ~k~~~d~i~~ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l-----~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~ 94 (103)
T PLN00035 20 RKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFL-----ENVIRDAVTYTEHARRKTVTAMDVVYALKRQ 94 (103)
T ss_pred HHHHHhhhccCCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHc
Confidence 34444444446666677777766554444444555555554432 2334444444455677789999999999887
Q ss_pred CCC
Q 038366 130 GVN 132 (169)
Q Consensus 130 ~~~ 132 (169)
|.+
T Consensus 95 g~~ 97 (103)
T PLN00035 95 GRT 97 (103)
T ss_pred CCc
Confidence 753
No 284
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=25.43 E-value=95 Score=17.39 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=21.3
Q ss_pred HHHHHHhHhccCCCCCcCHHHHHHHHHHh----CCCCCHHHHHHHHHHh
Q 038366 101 ELMKAFHIIDQDNNGKISAGDIKRIAREL----GVNFTDREIHEMVEEA 145 (169)
Q Consensus 101 ~~~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 145 (169)
.+..+...++....--+-..+++..+..+ |...+++-++.+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34444444433222223344555555543 6666777777777654
No 285
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=25.40 E-value=2.3e+02 Score=19.37 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=37.9
Q ss_pred HHHHHHhHccCCCC--cccHHHHHHHHHHhhcCcc-h-HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCC
Q 038366 65 INQMIADVDKDGSG--AIDLDEFEHMMTAKIGERD-S-KEELMKAFHIIDQDNNGKISAGDIKRIARELGV 131 (169)
Q Consensus 65 ~~~l~~~~~~~~~~--~i~~~ef~~~~~~~~~~~~-~-~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 131 (169)
+..+|..+-. ..| .++.+.|+..+........ . ......+=..+-......||..||..+|.++|.
T Consensus 21 vi~~W~eiv~-~~~i~av~~~~Fi~~aa~~f~q~~q~~~Na~~~I~~il~~k~~~~iT~~Df~~F~A~FGP 90 (181)
T PF11422_consen 21 VISIWEEIVQ-NHGIFAVSLDFFIKKAANRFKQPSQSLKNAIQVIQYILTPKNTNVITIPDFYKFLARFGP 90 (181)
T ss_dssp HHHHHHHHHS-SSS--EEEHHHHHHHHHHHHS-TTS-HHHHHHHHHHHS--SS-SEEEHHHHHHHHHHSSS
T ss_pred HHHHHHHHhc-CCCcceeeHHHHHHHHHHHhccccccccchHHHHHHHHcCCCCceeeHHHHHHHHHHhCC
Confidence 3344544422 444 7888999888876652211 1 122222223344555678999999999999983
No 286
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=25.34 E-value=1.1e+02 Score=18.91 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=8.9
Q ss_pred CcCHHHHHHHHHHhC
Q 038366 116 KISAGDIKRIARELG 130 (169)
Q Consensus 116 ~i~~~e~~~~l~~~~ 130 (169)
.+|.+|+..++..+|
T Consensus 36 p~s~~eL~~~l~~~g 50 (113)
T cd03033 36 PWTAETLRPFFGDLP 50 (113)
T ss_pred CCCHHHHHHHHHHcC
Confidence 456666666666554
No 287
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=25.19 E-value=71 Score=18.33 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=15.4
Q ss_pred hccCCCCcccHHHHHHHHH
Q 038366 145 ADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 145 ~d~d~~g~i~~~ef~~~l~ 163 (169)
...|..|.|+++.|+..+.
T Consensus 11 ~~~n~~G~iTl~gfLa~W~ 29 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQWS 29 (76)
T ss_pred eEEcCCCcCcHHHHHHHHH
Confidence 4568889999999998765
No 288
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=25.13 E-value=1.6e+02 Score=17.38 Aligned_cols=12 Identities=0% Similarity=0.299 Sum_probs=5.7
Q ss_pred cccHHHHHHHHH
Q 038366 79 AIDLDEFEHMMT 90 (169)
Q Consensus 79 ~i~~~ef~~~~~ 90 (169)
.++-.+...++.
T Consensus 39 ~~T~~Qv~~il~ 50 (95)
T PF14771_consen 39 CFTCAQVKQILS 50 (95)
T ss_pred ceeHHHHHHHHH
Confidence 355555444444
No 289
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=24.94 E-value=3.9e+02 Score=21.87 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhh
Q 038366 17 RHHGLSQQKKQEIKEAFELFD-TDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKI 93 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~f~~~D-~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~ 93 (169)
.++++.++....+.++|...- +-++-.|+.+.+..+=.-+|..++.+..+.+...+-.=+.|.|+=++...-+...+
T Consensus 79 ~~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l 156 (529)
T PRK06253 79 IYKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLSEEKIESLREVLHSYKKGEIDGDDLVLEISKAL 156 (529)
T ss_pred HHHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhc
Confidence 456778888899999998865 44677788888888777788888887755554444333567787788777665544
No 290
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=24.78 E-value=2.7e+02 Score=20.08 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=15.9
Q ss_pred CCcCHHHHHHH--HHHhCCCCCHHHHHHHHHHhccC
Q 038366 115 GKISAGDIKRI--ARELGVNFTDREIHEMVEEADRD 148 (169)
Q Consensus 115 g~i~~~e~~~~--l~~~~~~~~~~~~~~~~~~~d~d 148 (169)
..||.+|+..+ |...|..+..++++..+..+...
T Consensus 23 NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~ 58 (256)
T PF14932_consen 23 NVLSEEELQAFEELQKSGKILEGEALDEALKTISAF 58 (256)
T ss_pred ccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccc
Confidence 44555554333 33444444555555555544443
No 291
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=24.67 E-value=2.8e+02 Score=20.12 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhH
Q 038366 19 HGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADV 72 (169)
Q Consensus 19 ~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 72 (169)
..+|-.+++.+..++..++.+ +|.++..++..-+. ++...+.+.++.+
T Consensus 175 ~tLSySEleAv~~IL~~L~~~-egrlse~eLAerlG-----VSRs~ireAlrkL 222 (251)
T TIGR02787 175 NTLSYSELEAVEHIFEELDGN-EGLLVASKIADRVG-----ITRSVIVNALRKL 222 (251)
T ss_pred HhccHhHHHHHHHHHHHhccc-cccccHHHHHHHHC-----CCHHHHHHHHHHH
Confidence 346667777777777777443 56777777666553 4555555555555
No 292
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.66 E-value=1.8e+02 Score=23.31 Aligned_cols=44 Identities=18% Similarity=0.482 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHhcc--CCCCcccHHHHHHHHHhc
Q 038366 122 IKRIARELGVNFTDREIHEMVEEADR--DHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~~~~~~~d~--d~~g~i~~~ef~~~l~~~ 165 (169)
+...++.+|..++++++..++..+-. +..+.++-+|+..++...
T Consensus 323 v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~ 368 (488)
T PRK09389 323 LKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDV 368 (488)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 56677888999999999988887643 344579999988887653
No 293
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=24.64 E-value=1.1e+02 Score=21.10 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=33.3
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVE 143 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 143 (169)
++.++.+|..||+..=-..+.+++..++..-++--+..-++.++.
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~ 97 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIG 97 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHH
Confidence 478999999999988778889999999887665434444444443
No 294
>PF04963 Sigma54_CBD: Sigma-54 factor, core binding domain; InterPro: IPR007046 This domain makes a direct interaction with the core RNA polymerase, to form an enhancer dependent holoenzyme []. The centre of this domain contains a very weak similarity to a helix-turn-helix motif, which may represent a DNA binding domain.; GO: 0003677 DNA binding, 0006352 transcription initiation, DNA-dependent; PDB: 2K9L_A 2K9M_A.
Probab=24.53 E-value=2.4e+02 Score=19.33 Aligned_cols=89 Identities=19% Similarity=0.339 Sum_probs=33.6
Q ss_pred CCCCCcccHHHHHHHHHHcCCCCCHHHHH---HHHHhHccCCCCcccHHHHHHHHHHhhcC-cchHHHHHHHHhHhccC-
Q 038366 38 TDGSGTIDAKELNVAMRALGFEMTEEQIN---QMIADVDKDGSGAIDLDEFEHMMTAKIGE-RDSKEELMKAFHIIDQD- 112 (169)
Q Consensus 38 ~~~~g~l~~~e~~~~l~~~~~~~~~~~~~---~l~~~~~~~~~~~i~~~ef~~~~~~~~~~-~~~~~~~~~~f~~~D~~- 112 (169)
-|.+|+++ .....+...++ .+..++. .+++.++.-|-|.-+..|.+.+-...... ......+...+..+...
T Consensus 45 LD~~GyL~-~~~~eia~~l~--~~~~~v~~~l~~lQ~leP~GigAr~l~EcLllQl~~~~~~~~~~~il~~~l~~l~~~~ 121 (194)
T PF04963_consen 45 LDDDGYLT-ESLEEIAEELG--VSEEEVEKALELLQSLEPAGIGARDLQECLLLQLERKGPPDLAYRILENHLELLANKD 121 (194)
T ss_dssp BTTTSTCS-S-HHHHHHHCT--S-HHHHHHHHHHHHTTSS--TTTS-TTHHHHHHHHHS-S--TTHHHHHHHHHHHHH--
T ss_pred CCCCCccC-CCHHHHHHHhC--CCHHHHHHHHHHHHcCCCCccCcCCHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhh
Confidence 35577776 34455555555 4444444 45666777777777888866554433221 11223344444443221
Q ss_pred -----CCCCcCHHHHHHHHHHh
Q 038366 113 -----NNGKISAGDIKRIAREL 129 (169)
Q Consensus 113 -----~~g~i~~~e~~~~l~~~ 129 (169)
+.=.++.+++..++..+
T Consensus 122 ~~~ia~~l~~s~~~v~~~~~~I 143 (194)
T PF04963_consen 122 YKKIAKKLGISEEEVQEAIELI 143 (194)
T ss_dssp ----------------------
T ss_pred hccccccccccccccccccccc
Confidence 12235666666655543
No 295
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=24.10 E-value=3.9e+02 Score=21.69 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC-CCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcC
Q 038366 17 RHHGLSQQKKQEIKEAFELFD-TDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGE 95 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~f~~~D-~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~ 95 (169)
..+++.++..+.+.++|...- +-++=-|+.+.+.++=. +|..++.+..+.+...+-.=+.|.|+=++...-+...+.-
T Consensus 79 v~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~-~g~~~~~~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~ 157 (533)
T TIGR00470 79 IYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIEN-LGIDIDDEKKERLREVFHLYKKGAIDGDDLVFEIAKALNV 157 (533)
T ss_pred HHHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHH-hCCCCChhHHHHHHHHHHHhhcCCCccchhHHHHHHhhCC
Confidence 456778888899999998865 44666787777777666 8888887766665544433356778888877766555432
Q ss_pred cc--hHHHHHHHHhHh
Q 038366 96 RD--SKEELMKAFHII 109 (169)
Q Consensus 96 ~~--~~~~~~~~f~~~ 109 (169)
.. .-..+..+|-.|
T Consensus 158 ~d~~~~~ild~vfpef 173 (533)
T TIGR00470 158 SNEMGLKVLETVFPEF 173 (533)
T ss_pred chHHHHHHHHHhChhh
Confidence 22 123444555444
No 296
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=23.72 E-value=1.8e+02 Score=17.61 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=17.7
Q ss_pred HHHHHHHhHhccCCCCCcCHHHHHHHHHHh-CCCCCHHHHHHHHHH
Q 038366 100 EELMKAFHIIDQDNNGKISAGDIKRIAREL-GVNFTDREIHEMVEE 144 (169)
Q Consensus 100 ~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~ 144 (169)
+++..+-..+-..+....+..++...+... +...++++++.+-..
T Consensus 39 ~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~ 84 (96)
T PF11829_consen 39 DEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRAR 84 (96)
T ss_dssp HHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 444444333333333333444444444443 333444454444443
No 297
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=23.52 E-value=1.6e+02 Score=17.02 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=10.4
Q ss_pred CCcccHHHHHHHHHHc
Q 038366 41 SGTIDAKELNVAMRAL 56 (169)
Q Consensus 41 ~g~l~~~e~~~~l~~~ 56 (169)
||.++..|...+...+
T Consensus 13 DG~i~~~E~~~i~~~~ 28 (104)
T cd07177 13 DGRVDEEEIAAIEALL 28 (104)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 7777777766654443
No 298
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=23.47 E-value=2.7e+02 Score=20.29 Aligned_cols=61 Identities=15% Similarity=0.351 Sum_probs=30.6
Q ss_pred CCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCC---CCCcCHHHHHHHHHHhCCCCCHHHHHHH
Q 038366 77 SGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDN---NGKISAGDIKRIARELGVNFTDREIHEM 141 (169)
Q Consensus 77 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~---~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 141 (169)
.|.|++++.+.....-+.+....++-.. .+...... .+.-..+ .+=..+|-.+++++++.+
T Consensus 176 sGLVTIEDiLEqIVGdIEDE~Deee~~d-I~~ls~~~~~VrALT~Ie---dFNe~F~t~FsDeevDTI 239 (293)
T COG4535 176 SGLVTIEDILEQIVGDIEDEYDEEEDAD-IRQLSRHTWRVRALTEIE---DFNEAFGTHFSDEEVDTI 239 (293)
T ss_pred eeeEEHHHHHHHHhcccccccchhhhhh-hHhhcCCceEEEecccHH---HHHHHhcCCCChhhhhhh
Confidence 5778888877766554443333333333 22221111 1222233 333445666788887664
No 299
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=23.45 E-value=64 Score=15.20 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=11.6
Q ss_pred HHHhCCCCCHHHHHHHHHHhcc
Q 038366 126 ARELGVNFTDREIHEMVEEADR 147 (169)
Q Consensus 126 l~~~~~~~~~~~~~~~~~~~d~ 147 (169)
|..+| ++.+.+...+...+.
T Consensus 9 L~~mG--f~~~~~~~AL~~~~~ 28 (37)
T PF00627_consen 9 LMEMG--FSREQAREALRACNG 28 (37)
T ss_dssp HHHHT--S-HHHHHHHHHHTTT
T ss_pred HHHcC--CCHHHHHHHHHHcCC
Confidence 33447 677777777766543
No 300
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=23.39 E-value=1.7e+02 Score=17.24 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHhHcc---CCC-CcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCH
Q 038366 60 MTEEQINQMIADVDK---DGS-GAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTD 135 (169)
Q Consensus 60 ~~~~~~~~l~~~~~~---~~~-~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~ 135 (169)
.+.+.+...+..... +.. ..+++.+++..= +.+.+.....=..+.+.+-. |+.+..+|..-|+.+| +|.
T Consensus 7 A~~e~I~~AL~~~~~~~~~~~~~~it~~dL~~~G--L~g~~~s~~rR~~l~~~L~i---Gy~N~KqllkrLN~f~--it~ 79 (87)
T PF13331_consen 7 ASPEAIREALENARTEDEEPKESEITWEDLIELG--LIGGPDSKERREKLGEYLGI---GYGNAKQLLKRLNMFG--ITR 79 (87)
T ss_pred CCHHHHHHHHHHhCccccCCccCcCCHHHHHHCC--CCCCccHHHHHHHHHHHHCC---CCCCHHHHHHHHHHcC--CCH
Confidence 444455554444322 111 247888876632 22222222222234444433 7788888888888888 788
Q ss_pred HHHHHHH
Q 038366 136 REIHEMV 142 (169)
Q Consensus 136 ~~~~~~~ 142 (169)
+++..++
T Consensus 80 ~e~~~al 86 (87)
T PF13331_consen 80 EEFEEAL 86 (87)
T ss_pred HHHHHHh
Confidence 8877654
No 301
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=23.36 E-value=1.9e+02 Score=17.70 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=25.0
Q ss_pred CCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 115 GKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 115 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
-.+|.+++..+++..|..+...-+..+...+
T Consensus 16 ~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 16 IEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred CCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 4699999999999999887777666666655
No 302
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=23.23 E-value=86 Score=26.13 Aligned_cols=38 Identities=16% Similarity=0.395 Sum_probs=31.5
Q ss_pred CCCCCcCHHH-HHHHHHHhCCCCCHHHHHHHHHHhccCC
Q 038366 112 DNNGKISAGD-IKRIARELGVNFTDREIHEMVEEADRDH 149 (169)
Q Consensus 112 ~~~g~i~~~e-~~~~l~~~~~~~~~~~~~~~~~~~d~d~ 149 (169)
+=||.||..+ |-++|-.+|...+-.-+..+|..+-.|+
T Consensus 536 DIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NG 574 (738)
T KOG2116|consen 536 DIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENG 574 (738)
T ss_pred cCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCC
Confidence 4479999999 6788888898888888999998886664
No 303
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.19 E-value=1.7e+02 Score=17.23 Aligned_cols=47 Identities=9% Similarity=0.059 Sum_probs=26.8
Q ss_pred CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 114 NGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 114 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
+|.+|.++...+-. .+ ...+....++... -..|.-.|..|+++|...
T Consensus 32 ~gvlt~~~~~~I~~-~~--t~~~k~~~Lld~L--~~RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 32 KDILTDSMAESIMA-KP--TSFSQNVALLNLL--PKRGPRAFSAFCEALRET 78 (90)
T ss_pred cCCCCHHHHHHHHc-CC--CcHHHHHHHHHHH--HHhChhHHHHHHHHHHhc
Confidence 47777776554443 12 3444555555554 334556777777777653
No 304
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.81 E-value=3.5e+02 Score=22.68 Aligned_cols=65 Identities=18% Similarity=0.394 Sum_probs=31.2
Q ss_pred HHHHHHHHhHccCCCCcccHHHHHHHHHHhhcC-------cchHHHHHHHHhHhccCCCCCcCHHHHHHHHHH
Q 038366 63 EQINQMIADVDKDGSGAIDLDEFEHMMTAKIGE-------RDSKEELMKAFHIIDQDNNGKISAGDIKRIARE 128 (169)
Q Consensus 63 ~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~-------~~~~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~ 128 (169)
..++-++..+|. .+|.++-+++..++.....- ....+....++...|.+..|.+..+++..++..
T Consensus 18 ~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 18 DKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred HHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 334444444443 45555555555544332211 111123344555566666666666666655553
No 305
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.66 E-value=19 Score=16.56 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=10.2
Q ss_pred HHHHHhccCCCCcccHH
Q 038366 140 EMVEEADRDHDGEVNAD 156 (169)
Q Consensus 140 ~~~~~~d~d~~g~i~~~ 156 (169)
.++.+=|.|++-+|+.+
T Consensus 3 ~LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIE 19 (30)
T ss_pred hHhhccccCCCcEEEEe
Confidence 44555566777666644
No 306
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=22.41 E-value=2.8e+02 Score=19.41 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=26.3
Q ss_pred HHHHHhHhccCCCCCcCHHHHHHHHHHhC---CCCCHHHHHHHHHHhccCCC
Q 038366 102 LMKAFHIIDQDNNGKISAGDIKRIARELG---VNFTDREIHEMVEEADRDHD 150 (169)
Q Consensus 102 ~~~~f~~~D~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~d~~ 150 (169)
+..++...-....|.|+..|+...+.+.. ..++++++...+..+..=+.
T Consensus 99 i~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~ 150 (223)
T PF04157_consen 99 IAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGL 150 (223)
T ss_dssp HHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTS
T ss_pred HHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCC
Confidence 33444443334446777777776666642 24567777666666655443
No 307
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.22 E-value=1.6e+02 Score=16.42 Aligned_cols=47 Identities=15% Similarity=0.357 Sum_probs=27.5
Q ss_pred CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 038366 114 NGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRT 165 (169)
Q Consensus 114 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~~ 165 (169)
+|.++.+|...+.... ...+....++..... .|.=.|..|+..|...
T Consensus 25 ~~vlt~~e~~~i~~~~---~~~~k~~~Lld~l~~--kg~~af~~F~~~L~~~ 71 (80)
T cd01671 25 DGVLTEEEYEKIRSES---TRQDKARKLLDILPR--KGPKAFQSFLQALQET 71 (80)
T ss_pred cCCCCHHHHHHHHcCC---ChHHHHHHHHHHHHh--cChHHHHHHHHHHHhc
Confidence 4677777766654421 245555666666543 3445677777777654
No 308
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=22.07 E-value=1.5e+02 Score=16.12 Aligned_cols=28 Identities=7% Similarity=0.300 Sum_probs=13.7
Q ss_pred HHHhHhccCCCCCcCHHHHHHHHHHhCC
Q 038366 104 KAFHIIDQDNNGKISAGDIKRIARELGV 131 (169)
Q Consensus 104 ~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 131 (169)
.+++.++.+...-++.+|...-.+..|.
T Consensus 8 ~v~~~l~t~~~~GLs~~ev~~r~~~~G~ 35 (69)
T PF00690_consen 8 EVLKRLNTSSSQGLSSEEVEERRKKYGP 35 (69)
T ss_dssp HHHHHHTTBTSSBBTHHHHHHHHHHHSS
T ss_pred HHHHHHCcCCCCCCCHHHHHHHHHhccc
Confidence 3444444344444555555555555543
No 309
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=22.01 E-value=2.3e+02 Score=21.59 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=16.3
Q ss_pred CCCCCcccHHHHHHHHHHcCCC
Q 038366 38 TDGSGTIDAKELNVAMRALGFE 59 (169)
Q Consensus 38 ~~~~g~l~~~e~~~~l~~~~~~ 59 (169)
.+..+.++..+-..++..++.+
T Consensus 136 ~~~~~~lp~~eR~~lLe~lg~~ 157 (342)
T cd07894 136 KNTGRPLPVEERRELLEKYGLP 157 (342)
T ss_pred cCCCCCCCHHHHHHHHHhcCCC
Confidence 4445678888888888888664
No 310
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=21.85 E-value=95 Score=21.16 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=32.2
Q ss_pred HHHHHHHHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 038366 99 KEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEE 144 (169)
Q Consensus 99 ~~~~~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 144 (169)
++.++.+|.-||++.=-.++.+++..++..-++--+..-+..+...
T Consensus 48 r~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~N 93 (179)
T PF03352_consen 48 REAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINN 93 (179)
T ss_dssp HHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 4789999999999887788899999998877765555555555443
No 311
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=21.80 E-value=2.6e+02 Score=18.76 Aligned_cols=36 Identities=3% Similarity=0.119 Sum_probs=21.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 038366 16 GRHHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRA 55 (169)
Q Consensus 16 ~~~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~ 55 (169)
+-....+++++..+..+-..- +..++.++++.++..
T Consensus 35 ~gyR~Y~~~dl~rL~~I~~lr----~~G~sL~eI~~ll~~ 70 (172)
T cd04790 35 SNYRLYGERDLERLEQICAYR----SAGVSLEDIRSLLQQ 70 (172)
T ss_pred CCCccCCHHHHHHHHHHHHHH----HcCCCHHHHHHHHhc
Confidence 344455777777776665542 234667777776654
No 312
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=21.61 E-value=1.6e+02 Score=16.20 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=15.9
Q ss_pred CCcCHHHH---HHHHHHhCCCCCHHHHHHHHHHhc
Q 038366 115 GKISAGDI---KRIARELGVNFTDREIHEMVEEAD 146 (169)
Q Consensus 115 g~i~~~e~---~~~l~~~~~~~~~~~~~~~~~~~d 146 (169)
+.+|..+. ..++...| ++++-+..++..+-
T Consensus 11 r~ls~~e~~~i~~~~~~~~--~~~evI~~ai~~a~ 43 (73)
T TIGR01446 11 RMLSPFEMEDLKYWLDEFG--NSPELIKEALKEAV 43 (73)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 35554443 33444445 55666666666543
No 313
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=21.45 E-value=2.4e+02 Score=22.46 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=27.9
Q ss_pred cCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 111 QDNNGKISAGDIKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 111 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
....-.|+.++++++-+-....++++|.+.+...+
T Consensus 383 ~~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 383 TSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred ccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34456899999999988888889999987766544
No 314
>PRK00441 argR arginine repressor; Provisional
Probab=21.42 E-value=2.5e+02 Score=18.43 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc----CCCCc
Q 038366 113 NNGKISAGDIKRIARELGVNFTDREIHEMVEEADR----DHDGE 152 (169)
Q Consensus 113 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~----d~~g~ 152 (169)
..+..+.+|+.+.|+..|..+|..-+..-+..+.. +++|.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~ 58 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGK 58 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCC
Confidence 35788999999999999999998888777766532 45564
No 315
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=21.12 E-value=1.6e+02 Score=16.05 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=5.5
Q ss_pred CCCCCHHHHHH
Q 038366 130 GVNFTDREIHE 140 (169)
Q Consensus 130 ~~~~~~~~~~~ 140 (169)
|..++.+++..
T Consensus 22 ~~~vs~~~l~~ 32 (78)
T smart00862 22 GRVVSREELLE 32 (78)
T ss_pred CCccCHHHHHH
Confidence 44456555444
No 316
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.12 E-value=2.4e+02 Score=18.14 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=22.9
Q ss_pred cccHHHHHHHHH-HcCCC-CCHHHHHHHHHhHccC
Q 038366 43 TIDAKELNVAMR-ALGFE-MTEEQINQMIADVDKD 75 (169)
Q Consensus 43 ~l~~~e~~~~l~-~~~~~-~~~~~~~~l~~~~~~~ 75 (169)
.+.-.+|..|+. .+++. .+...+..++..|+..
T Consensus 38 ~l~HGef~~Wle~~~~~s~rtA~~~M~va~~yg~~ 72 (130)
T PF11300_consen 38 LLPHGEFGKWLEEEVGYSQRTAQRFMQVAEEYGSN 72 (130)
T ss_pred hCCHHHHHHHHHHHcCcCHHHHHHHHHHHHHhCcc
Confidence 477788999997 66665 4455566777777543
No 317
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=21.11 E-value=1.7e+02 Score=18.81 Aligned_cols=40 Identities=20% Similarity=0.549 Sum_probs=16.6
Q ss_pred HHHHHHhCCCCCHHHHHHHHHH---hccCCCCcccHHHHHHHHHh
Q 038366 123 KRIARELGVNFTDREIHEMVEE---ADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~---~d~d~~g~i~~~ef~~~l~~ 164 (169)
.+..+..|..+++++++..+.. +.. +|..+-+.|.++|..
T Consensus 90 ~q~A~~~gi~vsd~ev~~~i~~~~~f~~--~g~~~~~~f~~~L~~ 132 (154)
T PF13624_consen 90 LQEAKKLGISVSDAEVDDAIKQIPAFQE--NGKFDKEAFEEFLKQ 132 (154)
T ss_dssp HHHHHHTT----HHHHHHHHHH--HHHH--H----HHHHHHHHH-
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHH
Confidence 3334455766777777766655 222 254555556555544
No 318
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=21.05 E-value=1.6e+02 Score=15.98 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 038366 22 SQQKKQEIKEAFELFDTDGSGTIDAKELNV 51 (169)
Q Consensus 22 ~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~ 51 (169)
+..+...+.+.+..+..++...++.+++..
T Consensus 29 ~~~~~~el~~R~~~~~~g~~~~i~~eev~~ 58 (63)
T TIGR02574 29 TEAQKAELDRRLADYKADPSKASPWEEVRA 58 (63)
T ss_pred CHHHHHHHHHHHHHHHcCCcCCCCHHHHHH
Confidence 344444444444444444444444444443
No 319
>PRK09462 fur ferric uptake regulator; Provisional
Probab=20.92 E-value=2.5e+02 Score=18.14 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhH
Q 038366 18 HHGLSQQKKQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADV 72 (169)
Q Consensus 18 ~~~~~~~~~~~~~~~f~~~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 72 (169)
.-.+++.+...+..+.. ..++.++..|+...|+.-+..++...+.+.+..+
T Consensus 12 glr~T~qR~~Il~~l~~----~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 12 GLKVTLPRLKILEVLQE----PDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred CCCCCHHHHHHHHHHHh----CCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 33456555555555442 2356789999999998887777777777776665
No 320
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.91 E-value=1.2e+02 Score=14.47 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHhCCCCC
Q 038366 118 SAGDIKRIARELGVNFT 134 (169)
Q Consensus 118 ~~~e~~~~l~~~~~~~~ 134 (169)
|.++|+.+|...|+..+
T Consensus 5 s~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 44566666666665443
No 321
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=20.80 E-value=2.2e+02 Score=17.50 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHh
Q 038366 44 IDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAK 92 (169)
Q Consensus 44 l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~ 92 (169)
+|.+++..+|...|.......+..+...+. ..+..+.+......
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~~k 60 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGKEL 60 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHHhh
Confidence 999999999999999998888888887763 25777777665543
No 322
>PHA02335 hypothetical protein
Probab=20.74 E-value=2.2e+02 Score=17.58 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=20.6
Q ss_pred CCcccHHHHHHHHHHhhcCcchHHHHHHHHhHhccCCC
Q 038366 77 SGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNN 114 (169)
Q Consensus 77 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~ 114 (169)
...|++++|..-+... ..+...|+.+...++
T Consensus 22 p~sVt~ddf~~DlkRi-------~yIkrllKRy~~~~~ 52 (118)
T PHA02335 22 PQSVTYDDFEEDLKRF-------KYIKRLFKRYLNTGE 52 (118)
T ss_pred cccccHHHHHHHHHHH-------HHHHHHHHhhcCCCC
Confidence 4468888887777665 556667777755443
No 323
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=20.64 E-value=2.8e+02 Score=20.07 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=36.6
Q ss_pred HHHhHhccCCCCCcCHHH-HHHHHHHhCCCCCHHHHHHHHHHhccCCCCcc
Q 038366 104 KAFHIIDQDNNGKISAGD-IKRIARELGVNFTDREIHEMVEEADRDHDGEV 153 (169)
Q Consensus 104 ~~f~~~D~~~~g~i~~~e-~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i 153 (169)
.++..++.. .+++..++ +...+++++.+.+......+.+.+..+.+|.|
T Consensus 188 ~l~~~~~~~-~~~~e~~~~~~~~l~~~~~q~~~~~a~~~v~aiE~~~NGai 237 (261)
T KOG4169|consen 188 DLAENIDAS-GGYLEYSDSIKEALERAPKQSPACCAINIVNAIEYPKNGAI 237 (261)
T ss_pred HHHHHHHhc-CCcccccHHHHHHHHHcccCCHHHHHHHHHHHHhhccCCcE
Confidence 345555443 56777765 78899999988888888888888887877764
No 324
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=20.64 E-value=2.1e+02 Score=21.60 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHHHHHh--hCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhHccCCCCcccHHHHHHHHHHhhcCcchHHHHHH
Q 038366 27 QEIKEAFEL--FDTDGSGTIDAKELNVAMRALGFEMTEEQINQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMK 104 (169)
Q Consensus 27 ~~~~~~f~~--~D~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 104 (169)
.+|..+... .|.|....+--++|......+.......-+.-+.+.|-..=.|.+=|+|...-+.. ....+..
T Consensus 35 ~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~------~~P~lae 108 (337)
T TIGR02029 35 NEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN------RDPVVAE 108 (337)
T ss_pred HHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC------CChHHHH
Confidence 344444443 37777788888888775444322233334455555554444666666664443321 2345778
Q ss_pred HHhHhccCC
Q 038366 105 AFHIIDQDN 113 (169)
Q Consensus 105 ~f~~~D~~~ 113 (169)
+|..+..|.
T Consensus 109 ~F~~MaRDE 117 (337)
T TIGR02029 109 LFQLMARDE 117 (337)
T ss_pred HHHHHhhhh
Confidence 888876654
No 325
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=20.62 E-value=2.8e+02 Score=21.30 Aligned_cols=42 Identities=14% Similarity=0.307 Sum_probs=26.7
Q ss_pred hhCCCCCCcccHHHHHHHHHHcCCCC-------C----HHHHHHHHHhHccCC
Q 038366 35 LFDTDGSGTIDAKELNVAMRALGFEM-------T----EEQINQMIADVDKDG 76 (169)
Q Consensus 35 ~~D~~~~g~l~~~e~~~~l~~~~~~~-------~----~~~~~~l~~~~~~~~ 76 (169)
..+++..+.++.++=..++..-|++. + .+++..+...++.++
T Consensus 173 ire~~tgr~Lp~eer~~l~ekYgl~~V~~fg~~~~~e~~eei~eIve~L~keG 225 (382)
T COG1423 173 IREKNTGRPLPVEERLELAEKYGLPHVEIFGEFPADEAGEEIYEIVERLNKEG 225 (382)
T ss_pred EEecCCCCCCCHHHHHHHHHHcCCCceEEeeeechhHhHHHHHHHHHHHhhcC
Confidence 33456667777777777777766532 1 256777777776655
No 326
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.42 E-value=69 Score=25.24 Aligned_cols=47 Identities=13% Similarity=0.367 Sum_probs=30.3
Q ss_pred CCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 115 GKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 115 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
..+.--|+..+++.....+.+++.+.+...+ ..|..++++|...+.+
T Consensus 292 RILGMGDv~sLvEk~~~~~d~e~a~~~~~kl---~~g~FtL~Df~~Ql~~ 338 (451)
T COG0541 292 RILGMGDVLSLIEKAEEVVDEEEAEKLAEKL---KKGKFTLEDFLEQLEQ 338 (451)
T ss_pred HhcCcccHHHHHHHHHHhhhHHHHHHHHHHH---HhCCCCHHHHHHHHHH
Confidence 3444445666666665555666666666665 4566888888887754
No 327
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=20.31 E-value=2.1e+02 Score=21.86 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=37.1
Q ss_pred HHhHhccCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHH
Q 038366 105 AFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMK 163 (169)
Q Consensus 105 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~ 163 (169)
..-.+|..+.|.+++--.+-.+..+...--.+.+..+|..+. |.+|-+.+..|.+++.
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ 172 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLH 172 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHH
Confidence 334578889999988877777776532123445677777663 5567666665555554
No 328
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=20.15 E-value=1.2e+02 Score=17.99 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=21.4
Q ss_pred CCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCC
Q 038366 114 NGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDG 151 (169)
Q Consensus 114 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g 151 (169)
.|.||.+| .+.+++ ++.+|+....+.++..+-.
T Consensus 47 ~Glis~~E---A~~rY~--Ls~eEf~~W~~av~rhge~ 79 (90)
T PF06627_consen 47 GGLISVEE---ACRRYG--LSEEEFESWQRAVDRHGEN 79 (90)
T ss_dssp CTTS-HHH---HHHCTT--SSHHHHHHHHHHCCT--TT
T ss_pred cCCCCHHH---HHHHhC--CCHHHHHHHHHHHHHHhHH
Confidence 47787765 455555 8899998888887665543
No 329
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=20.15 E-value=1.9e+02 Score=16.65 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 038366 113 NNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKR 164 (169)
Q Consensus 113 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~d~~g~i~~~ef~~~l~~ 164 (169)
++|.||.++...+... ..+.+....++.... .-|...+.-|++.|..
T Consensus 26 ~~~Vit~e~~~~I~a~---~T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e 72 (82)
T cd08330 26 GKKVITQEQYSEVRAE---KTNQEKMRKLFSFVR--SWGASCKDIFYQILRE 72 (82)
T ss_pred HCCCCCHHHHHHHHcC---CCcHHHHHHHHHHHH--ccCHHHHHHHHHHHHH
Confidence 4577888776666552 245666677776653 3567788888888764
No 330
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.13 E-value=2.2e+02 Score=17.37 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=23.0
Q ss_pred CCCcCHHH----HHHHHHHhCCCCCHHHHHHHHHHh
Q 038366 114 NGKISAGD----IKRIARELGVNFTDREIHEMVEEA 145 (169)
Q Consensus 114 ~g~i~~~e----~~~~l~~~~~~~~~~~~~~~~~~~ 145 (169)
+|.--.++ +...|...|..+|+++++.+.+..
T Consensus 65 ~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 65 KGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 55554443 456677779999999998888765
No 331
>PF13592 HTH_33: Winged helix-turn helix
Probab=20.12 E-value=1.6e+02 Score=15.66 Aligned_cols=30 Identities=13% Similarity=0.360 Sum_probs=15.4
Q ss_pred CcCHHHHHHHHHH-hCCCCCHHHHHHHHHHh
Q 038366 116 KISAGDIKRIARE-LGVNFTDREIHEMVEEA 145 (169)
Q Consensus 116 ~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~ 145 (169)
..|..++..++.. +|..++..-+..+++.+
T Consensus 4 ~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~ 34 (60)
T PF13592_consen 4 RWTLKEIAAYIEEEFGVKYSPSGVYRLLKRL 34 (60)
T ss_pred cccHHHHHHHHHHHHCCEEcHHHHHHHHHHc
Confidence 4445555554443 45555555555555544
No 332
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.02 E-value=1.4e+02 Score=15.03 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHhCCCCCHHHH
Q 038366 118 SAGDIKRIARELGVNFTDREI 138 (169)
Q Consensus 118 ~~~e~~~~l~~~~~~~~~~~~ 138 (169)
+.+++..+.+..|..+|.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 667888888888888887775
Done!