BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038369
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S3J|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3P|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
pdb|3S3S|A Chain A, Transglutaminase 2 In Complex With A Novel Inhibitor
Length = 694
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 12 VIGQFVYLFGGWCP 25
V+G F+ LF WCP
Sbjct: 138 VLGHFILLFNAWCP 151
>pdb|3LY6|A Chain A, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|B Chain B, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
pdb|3LY6|C Chain C, Crystal Structure Of Human Transglutaminase 2 Complex With
Adenosine 5' Triphosphate
Length = 697
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 12 VIGQFVYLFGGWCP 25
V+G F+ LF WCP
Sbjct: 131 VLGHFILLFNAWCP 144
>pdb|1KV3|A Chain A, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|B Chain B, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|C Chain C, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|D Chain D, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|E Chain E, Human Tissue Transglutaminase In Gdp Bound Form
pdb|1KV3|F Chain F, Human Tissue Transglutaminase In Gdp Bound Form
pdb|2Q3Z|A Chain A, Transglutaminase 2 Undergoes Large Conformational Change
Upon Activation
Length = 687
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 12 VIGQFVYLFGGWCP 25
V+G F+ LF WCP
Sbjct: 131 VLGHFILLFNAWCP 144
>pdb|1MJB|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
E338q Mutant Complexed With Acetyl Coenzyme A
Length = 278
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 50 GVMICLEFWYNALLVLLAGHMKNATI-EISSFS 81
G++ +W + L+ LL H K TI EISS +
Sbjct: 188 GLLSYRAYWSDTLITLLVEHQKEITIDEISSMT 220
>pdb|1MJ9|A Chain A, Crystal Structure Of Yeast Esa1(C304s) Mutant Complexed
With Coenzyme A
Length = 278
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 50 GVMICLEFWYNALLVLLAGHMKNATI-EISSFS 81
G++ +W + L+ LL H K TI EISS +
Sbjct: 188 GLLSYRAYWSDTLITLLVEHQKEITIDEISSMT 220
>pdb|1MJA|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
Domain Complexed With Acetyl Coenzyme A
Length = 278
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 50 GVMICLEFWYNALLVLLAGHMKNATI-EISSFS 81
G++ +W + L+ LL H K TI EISS +
Sbjct: 188 GLLSYRAYWSDTLITLLVEHQKEITIDEISSMT 220
>pdb|1FY7|A Chain A, Crystal Structure Of Yeast Esa1 Histone Acetyltransferase
Domain Complexed With Coenzyme A
Length = 278
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 50 GVMICLEFWYNALLVLLAGHMKNATI-EISSFS 81
G++ +W + L+ LL H K TI EISS +
Sbjct: 188 GLLSYRAYWSDTLITLLVEHQKEITIDEISSMT 220
>pdb|3TO9|A Chain A, Crystal Structure Of Yeast Esa1 E338q Hat Domain Bound To
Coenzyme A With Active Site Lysine Acetylated
Length = 276
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 50 GVMICLEFWYNALLVLLAGHMKNATI-EISSFS 81
G++ +W + L+ LL H K TI EISS +
Sbjct: 186 GLLSYRAYWSDTLITLLVEHQKEITIDEISSMT 218
>pdb|3TO6|A Chain A, Crystal Structure Of Yeast Esa1 Hat Domain Complexed With
H4k16coa Bisubstrate Inhibitor
pdb|3TO7|A Chain A, Crystal Structure Of Yeast Esa1 Hat Domain Bound To
Coenzyme A With Active Site Lysine Acetylated
Length = 276
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 50 GVMICLEFWYNALLVLLAGHMKNATI-EISSFS 81
G++ +W + L+ LL H K TI EISS +
Sbjct: 186 GLLSYRAYWSDTLITLLVEHQKEITIDEISSMT 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.141 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,030,746
Number of Sequences: 62578
Number of extensions: 93207
Number of successful extensions: 215
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 9
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)