Query 038369
Match_columns 111
No_of_seqs 149 out of 1033
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 10:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1347 Uncharacterized membra 99.8 1.5E-20 3.2E-25 146.1 10.5 108 1-109 209-316 (473)
2 COG0534 NorM Na+-driven multid 99.8 4.8E-19 1E-23 136.9 11.5 107 1-109 200-308 (455)
3 PRK10367 DNA-damage-inducible 99.7 6E-17 1.3E-21 124.7 12.1 106 1-109 191-299 (441)
4 PRK00187 multidrug efflux prot 99.7 4.7E-16 1E-20 120.2 12.9 107 1-109 194-303 (464)
5 PRK10189 MATE family multidrug 99.7 9.2E-16 2E-20 119.2 12.6 107 1-109 216-326 (478)
6 PRK01766 multidrug efflux prot 99.6 2.6E-14 5.7E-19 109.6 11.6 107 1-109 197-306 (456)
7 PRK09575 vmrA multidrug efflux 99.5 1.7E-13 3.7E-18 105.6 11.7 108 1-109 194-302 (453)
8 TIGR00797 matE putative efflux 99.3 1.4E-10 3E-15 85.4 12.3 106 1-108 176-282 (342)
9 PRK10189 MATE family multidrug 98.9 1.3E-08 2.7E-13 79.4 11.0 71 37-109 26-96 (478)
10 PRK00187 multidrug efflux prot 98.8 4.9E-08 1.1E-12 75.7 10.4 72 36-109 6-77 (464)
11 PRK15099 O-antigen translocase 98.8 1.7E-07 3.6E-12 71.3 12.6 105 1-108 176-283 (416)
12 TIGR01695 mviN integral membra 98.6 2.1E-06 4.6E-11 66.3 12.7 103 2-108 187-290 (502)
13 PRK10367 DNA-damage-inducible 98.6 8.3E-07 1.8E-11 68.6 10.3 73 36-109 5-77 (441)
14 PRK01766 multidrug efflux prot 98.6 1.3E-06 2.9E-11 67.1 11.3 72 36-109 8-79 (456)
15 COG0534 NorM Na+-driven multid 98.3 7.6E-06 1.7E-10 63.7 10.4 71 37-109 14-84 (455)
16 PRK09575 vmrA multidrug efflux 98.3 6.5E-06 1.4E-10 63.6 9.2 71 37-109 9-80 (453)
17 PF01554 MatE: MatE; InterPro 98.2 1.1E-06 2.5E-11 58.1 2.9 60 48-109 1-60 (162)
18 TIGR02900 spore_V_B stage V sp 98.0 0.00016 3.6E-09 55.6 12.5 107 2-108 184-302 (488)
19 PF01943 Polysacc_synt: Polysa 97.4 0.016 3.4E-07 40.6 13.5 70 36-106 201-270 (273)
20 TIGR00797 matE putative efflux 97.0 0.0058 1.3E-07 44.8 8.2 60 48-109 1-60 (342)
21 PF03023 MVIN: MviN-like prote 96.7 0.13 2.8E-06 40.1 13.9 95 1-101 161-258 (451)
22 KOG1347 Uncharacterized membra 96.6 0.0094 2E-07 47.0 7.0 72 35-108 23-95 (473)
23 PF13440 Polysacc_synt_3: Poly 96.5 0.16 3.5E-06 35.2 13.6 65 41-107 184-250 (251)
24 COG0728 MviN Uncharacterized m 95.3 0.45 9.8E-06 38.2 11.1 87 1-97 195-283 (518)
25 PRK10459 colanic acid exporter 93.1 2.5 5.5E-05 32.7 11.0 53 36-89 203-255 (492)
26 COG2244 RfbX Membrane protein 90.7 6.3 0.00014 30.3 11.1 66 35-101 208-273 (480)
27 TIGR02900 spore_V_B stage V sp 82.6 11 0.00024 28.9 8.0 63 43-107 2-66 (488)
28 PF07260 ANKH: Progressive ank 61.3 60 0.0013 25.0 7.1 44 30-73 225-269 (345)
29 KOG2234 Predicted UDP-galactos 61.0 29 0.00063 26.7 5.4 49 29-86 79-127 (345)
30 PF14667 Polysacc_synt_C: Poly 46.1 74 0.0016 20.0 10.5 22 1-22 59-80 (146)
31 PF03023 MVIN: MviN-like prote 27.7 3E+02 0.0064 21.5 7.4 22 1-22 382-403 (451)
32 TIGR01695 mviN integral membra 27.5 2.9E+02 0.0062 21.3 8.6 40 62-103 22-65 (502)
33 PF02228 Gag_p19: Major core p 25.9 53 0.0011 19.9 1.6 19 29-47 36-54 (92)
34 PRK15099 O-antigen translocase 25.7 1.7E+02 0.0037 22.1 4.8 46 59-106 21-67 (416)
35 PF01371 Trp_repressor: Trp re 23.9 32 0.0007 21.0 0.4 15 95-109 59-73 (87)
36 PF07260 ANKH: Progressive ank 23.6 3.5E+02 0.0076 20.9 8.1 70 38-107 9-79 (345)
37 PF04142 Nuc_sug_transp: Nucle 23.3 2.3E+02 0.0049 20.4 4.8 28 33-60 8-35 (244)
38 PF11014 DUF2852: Protein of u 21.8 2.4E+02 0.0051 18.3 4.2 29 81-109 11-39 (115)
39 PF06808 DctM: DctM-like trans 21.6 3.9E+02 0.0085 20.8 8.6 39 13-51 183-221 (416)
40 PLN03098 LPA1 LOW PSII ACCUMUL 21.6 4.3E+02 0.0094 21.2 6.7 61 35-95 195-255 (453)
No 1
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.84 E-value=1.5e-20 Score=146.05 Aligned_cols=108 Identities=38% Similarity=0.656 Sum_probs=104.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSF 80 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~ 80 (111)
|++..+++|++..++..|+....++++|.+++++ +++|++++|+++|+++|.|+|||.|++..++.|.+||++.+++++
T Consensus 209 ala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~ 287 (473)
T KOG1347|consen 209 ALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQ 287 (473)
T ss_pred hHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 5789999999999999999887888999999988 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 81 SICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 81 ~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
+|++|+.++.||+|.|++.|+++||+|++
T Consensus 288 sI~~~~~~~~~~~~~~~~~a~strv~neL 316 (473)
T KOG1347|consen 288 SICLEIGGWHLMIPGAFSAAVSTRVSNEL 316 (473)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999986
No 2
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.80 E-value=4.8e-19 Score=136.89 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=96.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhccc--CcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGGWC--PNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEIS 78 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~~~--~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lA 78 (111)
|+||.+++++.+++++.|+.+++. +....+..+++++.+|+++|+|+|++++...|...+...+.+.+++| +.++|
T Consensus 200 A~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lA 277 (455)
T COG0534 200 ALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALA 277 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHH
Confidence 689999999999999999988742 22323444677799999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 79 SFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 79 A~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
||+|+.++.++.||+++|+++|++++|||++
T Consensus 278 a~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~ 308 (455)
T COG0534 278 AYGIALRIASFIFMPPFGIAQAVTILVGQNL 308 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999975
No 3
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.73 E-value=6e-17 Score=124.66 Aligned_cols=106 Identities=12% Similarity=0.084 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc-ccCcc-cCCCCHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGG-WCPNT-WKGFSSAAF-ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEI 77 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~-~~~~~-~~~~~~~~~-~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~l 77 (111)
|+||.+++++.+++...|++++ +.++. ++.+ ++++ +.+|+++|+|.|++++...|..++.+.+.+++++| +.++
T Consensus 191 a~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~al 267 (441)
T PRK10367 191 ALATVIAEYATLLIGLLMVRKVLKLRGISLEML-KTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLG--SDII 267 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccHHHh-hhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHH
Confidence 5899999999998887777654 22211 1111 2222 46899999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 78 SSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 78 AA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
|||+|+.|+.++.|++++|+++|++++|||++
T Consensus 268 Aa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~ 299 (441)
T PRK10367 268 AVNAVLMTLLTFTAYALDGFAYAVEAHSGQAY 299 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.69 E-value=4.7e-16 Score=120.18 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc-ccCc--ccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGG-WCPN--TWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEI 77 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~-~~~~--~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~l 77 (111)
|+||.+++++..+.+..|++++ ++++ .++++.+++++.+|+++|+|+|++++.+.|...+.+.+.+++++| +.++
T Consensus 194 alat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~al 271 (464)
T PRK00187 194 GLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALG--STQL 271 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHH
Confidence 5799999999888877777765 3322 122333456778999999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 78 SSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 78 AA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
|||+++.|+..+.++++.|++.|++++|||++
T Consensus 272 Aa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~ 303 (464)
T PRK00187 272 AAHQIALQIVSVAFMVPVGLSYAVTMRVGQHY 303 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975
No 5
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.67 E-value=9.2e-16 Score=119.17 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc-c--cCcccCC-CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGG-W--CPNTWKG-FSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIE 76 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~-~--~~~~~~~-~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~ 76 (111)
|+||.+++++..+++..++.++ + .+..+++ +.+++++.+|+++|+|+|.+++...+...+.+.+.+++++| +.+
T Consensus 216 a~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~ 293 (478)
T PRK10189 216 GLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSV 293 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHH
Confidence 5799999999988876655543 2 1112222 22346788999999999999999999999988899999999 889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 77 ISSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 77 lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
+|||+|+.|+.++.|+++.|+++|++++|||++
T Consensus 294 ~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~ 326 (478)
T PRK10189 294 IAGNFIAFSIAALINLPGNALGSASTIITGTRL 326 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999975
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.58 E-value=2.6e-14 Score=109.61 Aligned_cols=107 Identities=23% Similarity=0.348 Sum_probs=92.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc-ccC--cccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGG-WCP--NTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEI 77 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~-~~~--~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~l 77 (111)
|+||.+++++..+....|++++ +++ +.+.++.+++++.+|+++|+|+|..++...|...+.+...+++++| +.++
T Consensus 197 a~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~l 274 (456)
T PRK01766 197 GVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTV 274 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHH
Confidence 4789999999999888777655 322 1233334456678999999999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 78 SSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 78 AA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
|+++++.|+.++.++++.|++.|+++++||++
T Consensus 275 Aa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~ 306 (456)
T PRK01766 275 AAHQIALNFSSLLFMLPLSLAMALTIRVGFEL 306 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999975
No 7
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.52 E-value=1.7e-13 Score=105.55 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=90.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccCcccC-CCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGGWCPNTWK-GFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISS 79 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~~~~~~~~-~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA 79 (111)
|+||.+++++.+++.+.|+++++.+..++ +..+.+++.+|+++|+|+|++++...+...+.+...+.+++|+ +.++|+
T Consensus 194 a~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa 272 (453)
T PRK09575 194 AIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGA 272 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHH
Confidence 57999999999998888776553222221 1223556788999999999999999999999999999999994 257999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 80 FSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 80 ~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
|+++.|+..+.++++.|++.+++++|||++
T Consensus 273 ~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~ 302 (453)
T PRK09575 273 YAIVGYLMVLYYLVAEGIAEGMQPPVSYYF 302 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 999999999999999999999999999974
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.27 E-value=1.4e-10 Score=85.36 Aligned_cols=106 Identities=26% Similarity=0.401 Sum_probs=89.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc-ccCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGG-WCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISS 79 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~-~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA 79 (111)
++++.+++.+.++....+.+++ +.+..|++..+.+++.+|+++|+|+|..+....+...+.+...+.+.+| +.++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~ 253 (342)
T TIGR00797 176 ALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAA 253 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHH
Confidence 3678889998888777666554 4433444434456678899999999999999999999999999999999 778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038369 80 FSICLNIISWEFMLVFGFLAASGYVSKND 108 (111)
Q Consensus 80 ~~I~~n~~~l~f~~~~gl~~A~sirVg~~ 108 (111)
++++.++..+.++++.+++.+...+++++
T Consensus 254 ~~~a~~~~~~~~~~~~~~~~a~~~~~~~~ 282 (342)
T TIGR00797 254 HQIALNVESLLFMPAFGFGIAVSILVGQA 282 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 9
>PRK10189 MATE family multidrug exporter; Provisional
Probab=98.94 E-value=1.3e-08 Score=79.42 Aligned_cols=71 Identities=6% Similarity=-0.062 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 37 ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 37 ~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
+.+|+++|+|+|..++...+.....+-+.++|++| ++++||++++.++..+.+++..|++.++++++||++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~ 96 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSL 96 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44899999999999999999999999999999999 889999999999999999999999999999999974
No 10
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=98.82 E-value=4.9e-08 Score=75.70 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=68.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
.+++|+++|+|+|..++...+......-+.++|++| +.++||++++.++.++.++++.|++.+.+++++|+.
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~ 77 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRH 77 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999999 889999999999999999999999999999999874
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=98.80 E-value=1.7e-07 Score=71.31 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc-ccCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCchHHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGG-WCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAG-HMKNATIEIS 78 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~-~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g-~lg~~~~~lA 78 (111)
++||.+++.+..+..+.++.++ +.+..+.+ .+.+++.+|++++.|.|..++.........+...+++ .+| +.+++
T Consensus 176 ~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg 252 (416)
T PRK15099 176 LLGLALVPALVVLPAGIMLIRRGTIPLSYLK-PSWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVG 252 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccceehHhhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhh
Confidence 4789999988877766666544 21111111 1234567899999999999999999999999888886 999 77999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 038369 79 SFSICLNIIS-WEFMLVFGFLAASGYVSKND 108 (111)
Q Consensus 79 A~~I~~n~~~-l~f~~~~gl~~A~sirVg~~ 108 (111)
.++++.++.. +..+++.+++++..-+++++
T Consensus 253 ~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~ 283 (416)
T PRK15099 253 IWQGVSSISDAYLQFITASFSVYLLPTLSRL 283 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999977 55899999999999999873
No 12
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.57 E-value=2.1e-06 Score=66.30 Aligned_cols=103 Identities=12% Similarity=-0.042 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHH
Q 038369 2 SAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFS 81 (111)
Q Consensus 2 iat~is~~~~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~ 81 (111)
+++.+++.+..+....+.++++.+ |+...+.+++.+|+++|.|.|..++...+.....+-..+.+.+| +.++++++
T Consensus 187 ~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~--~~~v~~~~ 262 (502)
T TIGR01695 187 IGVLIGGVAQLLIQLPFLRKAGFL--LKPRFNFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLE--IGSVSALY 262 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc--ccCcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHH
Confidence 678888888887776666544321 11111123467899999999999999999999999888888888 66889999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhhh
Q 038369 82 ICLNIISWEFM-LVFGFLAASGYVSKND 108 (111)
Q Consensus 82 I~~n~~~l~f~-~~~gl~~A~sirVg~~ 108 (111)
++.++..+... +..+++.+...++++.
T Consensus 263 ~a~~l~~~~~~~~~~~i~~~~~P~~s~~ 290 (502)
T TIGR01695 263 YANRIYQLPLGIFGISLSTVLLPKLSRH 290 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888775 5778999999888875
No 13
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=98.56 E-value=8.3e-07 Score=68.59 Aligned_cols=73 Identities=10% Similarity=0.100 Sum_probs=67.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
+++.|+++|+++|..+++..+.....+-+.++|++|+ +.++||.+++.++..+.+.+..|++.++++.++|.+
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~ 77 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAF 77 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999999999999999999942 668999999999999999999999999999999874
No 14
>PRK01766 multidrug efflux protein; Reviewed
Probab=98.56 E-value=1.3e-06 Score=67.08 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=67.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
.+.+|+++|+++|..++...+.....+-..+++++| +.++|+++++.++..+.+.+..|++.+.+.+++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~ 79 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLN 79 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999 789999999999999999999999999999999864
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=98.33 E-value=7.6e-06 Score=63.67 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 37 ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 37 ~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
+.+|+++|+++|..+++..+...-.+=++++|++| +.++||.+++.++..+.+.+..|++.++++.++|++
T Consensus 14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~ 84 (455)
T COG0534 14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAI 84 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 57899999999999999999999999999999999 899999999999999999999999999999999974
No 16
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=98.29 E-value=6.5e-06 Score=63.62 Aligned_cols=71 Identities=10% Similarity=0.096 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 37 ADLYPVLKLSISSGVMICLEFWYNALLVLLAGHM-KNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 37 ~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~l-g~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
+..|+++|+++|..++...+...-.+-+.+.|++ | +.++|+.+++.++..+.+.+..+++.++++++||.+
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~ 80 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKR 80 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 5579999999999999999999999999999996 8 789999999999999999999999999999999864
No 17
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=98.20 E-value=1.1e-06 Score=58.11 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 48 SSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 48 P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
|..++...|...+.+.+.+++++| ++++|+++++.++..+.+++..|++.|+++++||++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~ 60 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNI 60 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccc
Confidence 899999999999999999999999 789999999999999999999999999999999864
No 18
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=98.05 E-value=0.00016 Score=55.58 Aligned_cols=107 Identities=8% Similarity=0.083 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhc-ccC--cccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----Cc-h
Q 038369 2 SAMIIASWFIVIGQFVYLFGG-WCP--NTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHM----KN-A 73 (111)
Q Consensus 2 iat~is~~~~~~~l~~y~~~~-~~~--~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~l----g~-~ 73 (111)
+++.+++++..+....+.+++ +.+ ..+.++.+.+++.+|++++.|+|..++...+.....+-.++.++. |. .
T Consensus 184 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~ 263 (488)
T TIGR02900 184 LSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTY 263 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 466778888877766555444 212 122222344567899999999999999999999988888887754 21 0
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038369 74 TIEISSF----SICLNIISWEFMLVFGFLAASGYVSKND 108 (111)
Q Consensus 74 ~~~lAA~----~I~~n~~~l~f~~~~gl~~A~sirVg~~ 108 (111)
+.+.+.. +++.++..+..++..+++.+...++++.
T Consensus 264 ~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~ 302 (488)
T TIGR02900 264 REATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEA 302 (488)
T ss_pred HHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1122222 2445566666677788899988888875
No 19
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.39 E-value=0.016 Score=40.61 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=59.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038369 36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSK 106 (111)
Q Consensus 36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg 106 (111)
.+..|+++|.|.|........+.....-.++.+.+-+ +.+++-++++.++.....+++..+..+..=+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s 270 (273)
T PF01943_consen 201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLS 270 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999998888888754 678999999999999999999888876554443
No 20
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=96.99 E-value=0.0058 Score=44.82 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 48 SSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 48 P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
|..++...+.....+.+++.+++| +.++++++++.++..+...++.|++++.+.++++..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~ 60 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAV 60 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 677888888888999999999999 788999999999999999999999999999999753
No 21
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=96.70 E-value=0.13 Score=40.10 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcccC--cccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGGWCP--NTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEIS 78 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~~~~--~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lA 78 (111)
|++..++..++.+.++.+.++...+ ..++ +. .++.|+++|...|..+.........-+-..+++.++ +-.++
T Consensus 161 a~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs 234 (451)
T PF03023_consen 161 AWGVLIGAIIQFLIQLPYLRRFGFRFRPKFD-WR---DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVS 234 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccccCC-CC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHH
Confidence 4678888888888777776655322 2221 11 245799999999999999999888888888899999 66777
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHH
Q 038369 79 SFSICLNIISWEF-MLVFGFLAAS 101 (111)
Q Consensus 79 A~~I~~n~~~l~f-~~~~gl~~A~ 101 (111)
+...+..+..+.. .+..+++.+.
T Consensus 235 ~l~YA~~l~~lp~~i~~~~i~tv~ 258 (451)
T PF03023_consen 235 ALNYAQRLYQLPLGIFAVSISTVV 258 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666555544 2333444443
No 22
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=96.59 E-value=0.0094 Score=46.99 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=64.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 038369 35 AFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISW-EFMLVFGFLAASGYVSKND 108 (111)
Q Consensus 35 ~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l-~f~~~~gl~~A~sirVg~~ 108 (111)
..++.|++.+++.|..+....+...-.+...++|++| +.++|+.+++.++.+. .|-+-.|++.+.-+..||+
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa 95 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQA 95 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhh
Confidence 3578899999999999999999999999999999999 7799999999888876 6788889998888888875
No 23
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=96.47 E-value=0.16 Score=35.22 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 038369 41 PVLKLSISSGVMICLEFWYNALLVLLAGH-MKNATIEISSFSICLNIISWEF-MLVFGFLAASGYVSKN 107 (111)
Q Consensus 41 ~~l~lg~P~~~~~~~E~~~f~~~~~~~g~-lg~~~~~lAA~~I~~n~~~l~f-~~~~gl~~A~sirVg~ 107 (111)
+.+|-+.|........+....+-.++++. +| .++++.++++.++..... +++.+++....-+..+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999 87 789999999999999888 8888888776665544
No 24
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=95.30 E-value=0.45 Score=38.18 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=65.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcc--cCcccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGGW--CPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEIS 78 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~~--~~~~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lA 78 (111)
|+++.++-..+.+..+..+++.+ .+..| +++. ++.|++.+.-.|.-+.........-+-+.+++.+. +-+.+
T Consensus 195 a~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~-~~~~---~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~--~Gsis 268 (518)
T COG0728 195 AWGVLIGGLLQLLVQLPALRKAGLLIKPRF-GFKD---PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLA--EGSVS 268 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccCCCC-CCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccHH
Confidence 46788888888888877777663 22222 2222 56799999999999999999999999999999997 33443
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038369 79 SFSICLNIISWEFMLVFGF 97 (111)
Q Consensus 79 A~~I~~n~~~l~f~~~~gl 97 (111)
. ++.....|+.|+|+
T Consensus 269 ~----l~YA~rl~qlPlGi 283 (518)
T COG0728 269 W----LYYADRLYQLPLGI 283 (518)
T ss_pred H----HHHHHHHHHhhHHH
Confidence 3 57778888989865
No 25
>PRK10459 colanic acid exporter; Provisional
Probab=93.11 E-value=2.5 Score=32.72 Aligned_cols=53 Identities=11% Similarity=0.251 Sum_probs=42.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH
Q 038369 36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISW 89 (111)
Q Consensus 36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l 89 (111)
.+.+|++++.|.|..............-.++.|.+-+ +.+++.++.+.++..+
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~ 255 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILG-AEVLGGYNLAYNVATV 255 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHH
Confidence 4668999999999999888888887777787766532 6788888888887655
No 26
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=90.71 E-value=6.3 Score=30.34 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=50.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038369 35 AFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAAS 101 (111)
Q Consensus 35 ~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~ 101 (111)
.++.+++++|.|+|..............=.++.|.+-. +.+++-++.+..+......+...++.+.
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l 273 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVL 273 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999888888888776632 5667777766666666666666665544
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=82.59 E-value=11 Score=28.94 Aligned_cols=63 Identities=10% Similarity=0.066 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 038369 43 LKLSISSGVMICLEFWYNALLVLLAGH-MKNATIEISSFSICLNIISWEFMLV-FGFLAASGYVSKN 107 (111)
Q Consensus 43 l~lg~P~~~~~~~E~~~f~~~~~~~g~-lg~~~~~lAA~~I~~n~~~l~f~~~-~gl~~A~sirVg~ 107 (111)
+|=+.|..+........--+.+.+.++ +| +++.++.+.+.++..+..++. +|++.+.+-++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~ 66 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAE 66 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 355677777777766666666777776 69 889999999998888877765 6899888887765
No 28
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=61.29 E-value=60 Score=24.96 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=37.4
Q ss_pred CCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCch
Q 038369 30 GFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGH-MKNA 73 (111)
Q Consensus 30 ~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~-lg~~ 73 (111)
+.++.+-...+++++.-.|-+..+..++.+--+..+++++ +|++
T Consensus 225 ~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs 269 (345)
T PF07260_consen 225 GLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGS 269 (345)
T ss_pred CcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3444445678999999999999999999999999999999 7764
No 29
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=60.95 E-value=29 Score=26.66 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=30.2
Q ss_pred CCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Q 038369 29 KGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNI 86 (111)
Q Consensus 29 ~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~ 86 (111)
+...+..+..+++.+|+++|+.+= .++. .+.-+-.+.++ .+.+||..|.
T Consensus 79 ~~l~~~i~~~~~~~lk~~vPa~iY-alqN---nl~yval~~ld-----aatyqVt~ql 127 (345)
T KOG2234|consen 79 KSLSKEILAAPRETLKVSVPALIY-ALQN---NLQYVALSNLD-----AATYQVTYQL 127 (345)
T ss_pred hhcCHHHHhChHHHHHHHHHHHHH-HHhh---hHHHHHHhcCC-----chhhhhhhhH
Confidence 556677788889999999999863 3333 23333334454 2346665554
No 30
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=46.06 E-value=74 Score=19.99 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc
Q 038369 1 MSAMIIASWFIVIGQFVYLFGG 22 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~ 22 (111)
|+||.+++.+.+.....+.+++
T Consensus 59 a~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 59 AIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888877776666554
No 31
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=27.70 E-value=3e+02 Score=21.47 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=18.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc
Q 038369 1 MSAMIIASWFIVIGQFVYLFGG 22 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~ 22 (111)
|+||+++.+++++++..+..++
T Consensus 382 ala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 382 ALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999887777665
No 32
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=27.51 E-value=2.9e+02 Score=21.25 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=25.7
Q ss_pred HHHHHHhh-cCchHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 038369 62 LLVLLAGH-MKNATIEI-SSFSICLNIISWEFMLVF--GFLAASGY 103 (111)
Q Consensus 62 ~~~~~~g~-lg~~~~~l-AA~~I~~n~~~l~f~~~~--gl~~A~si 103 (111)
+-..+.++ +| +.+. ++.+++.++..+.+.+.. |++.+..-
T Consensus 22 ~~~~~~a~~lG--~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~ 65 (502)
T TIGR01695 22 VRDAIIASAFG--AGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVP 65 (502)
T ss_pred HHHHHHHHHhC--CChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444455 89 5677 789998888877766543 45555443
No 33
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=25.95 E-value=53 Score=19.91 Aligned_cols=19 Identities=42% Similarity=0.485 Sum_probs=13.9
Q ss_pred CCCCHHHHhhHHHHHHHHH
Q 038369 29 KGFSSAAFADLYPVLKLSI 47 (111)
Q Consensus 29 ~~~~~~~~~~~~~~l~lg~ 47 (111)
.+.+..+|..+|+++|+++
T Consensus 36 PgPS~~DF~qLr~flk~al 54 (92)
T PF02228_consen 36 PGPSSFDFHQLRNFLKLAL 54 (92)
T ss_dssp ---STTTHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHH
Confidence 3456778999999999986
No 34
>PRK15099 O-antigen translocase; Provisional
Probab=25.71 E-value=1.7e+02 Score=22.10 Aligned_cols=46 Identities=13% Similarity=-0.018 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 038369 59 YNALLVLLAGHMKNATIEISSFSICLNIISWEFML-VFGFLAASGYVSK 106 (111)
Q Consensus 59 ~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~-~~gl~~A~sirVg 106 (111)
.+-..-+++-.+| +++.+......++..+...+ .+|++.+.+..++
T Consensus 21 ~~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia 67 (416)
T PRK15099 21 GLLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVA 67 (416)
T ss_pred HHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHH
Confidence 4455666677778 66776666666666655544 5666555544443
No 35
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=23.95 E-value=32 Score=21.02 Aligned_cols=15 Identities=13% Similarity=-0.188 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhh
Q 038369 95 FGFLAASGYVSKNDH 109 (111)
Q Consensus 95 ~gl~~A~sirVg~~l 109 (111)
.|.|.|+-+||.+++
T Consensus 59 tgvS~aTItRvsr~L 73 (87)
T PF01371_consen 59 TGVSIATITRVSRCL 73 (87)
T ss_dssp HTSTHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHH
Confidence 578888889988875
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=23.64 E-value=3.5e+02 Score=20.91 Aligned_cols=70 Identities=7% Similarity=0.078 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038369 38 DLYPVLKLSISSGVMICLEFWYNALLVLLAGH-MKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKN 107 (111)
Q Consensus 38 ~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~-lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~ 107 (111)
..+++.+.=+|-++....--.+-.+..--.++ .-++.+.+|++.++..+.-+.=-+...+-..+...|..
T Consensus 9 ~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s 79 (345)
T PF07260_consen 9 SYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS 79 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc
Confidence 44677777778777766666666666665555 44445668999998888776655666666666655543
No 37
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=23.29 E-value=2.3e+02 Score=20.38 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=19.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038369 33 SAAFADLYPVLKLSISSGVMICLEFWYN 60 (111)
Q Consensus 33 ~~~~~~~~~~l~lg~P~~~~~~~E~~~f 60 (111)
++.++.+|+.+++++|+.+=.......|
T Consensus 8 ~~~~~~~~~~~~~~vPA~lY~~qn~L~~ 35 (244)
T PF04142_consen 8 DEVWKSPKDTLKLAVPALLYAIQNNLQF 35 (244)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999988544444333
No 38
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=21.77 E-value=2.4e+02 Score=18.26 Aligned_cols=29 Identities=7% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 81 SICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 81 ~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
.|+.-+..+++-.|+|++.-+-+.-|..+
T Consensus 11 ~Ia~mVlGFi~fWPlGla~Lay~iw~~rm 39 (115)
T PF11014_consen 11 WIAAMVLGFIVFWPLGLALLAYMIWGKRM 39 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677888888999999998888777654
No 39
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=21.62 E-value=3.9e+02 Score=20.75 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=17.8
Q ss_pred HHHHHHHHhcccCcccCCCCHHHHhhHHHHHHHHHHHHH
Q 038369 13 IGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGV 51 (111)
Q Consensus 13 ~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~l~lg~P~~~ 51 (111)
+.+..|......|+.++..+++++++.++.++-++|.-+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 221 (416)
T PF06808_consen 183 LGLMIYVYFIARKPGLPPEPRASLKERWRAFKRAIPALL 221 (416)
T ss_pred HHHHHhHhheeeccccCccccchHHHHHHHHHhcchHHH
Confidence 333444444312333343344455555666665555433
No 40
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=21.57 E-value=4.3e+02 Score=21.23 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=39.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHH
Q 038369 35 AFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVF 95 (111)
Q Consensus 35 ~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~ 95 (111)
.|+.+|+++-+++-.+..+..-.....++..++|.=+.+.+.-+....+.|+..+..|..+
T Consensus 195 PfR~~R~f~y~a~~asa~ig~~i~~~rl~~a~aG~~~ap~l~~~~~nlaI~igav~~f~~L 255 (453)
T PLN03098 195 PFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIVAFVSL 255 (453)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHhhcccchHHHHHHHHHHH
Confidence 3688999999998888766655555555566666633233333346677788777666543
Done!