Query 038369
Match_columns 111
No_of_seqs 149 out of 1033
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 17:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.4 4.4E-12 1.5E-16 94.8 10.7 107 1-109 196-305 (460)
2 3mkt_A Multi antimicrobial ext 97.8 4.2E-05 1.4E-09 56.8 6.2 73 34-108 6-78 (460)
3 1jvr_A HTLV-II MA, MA, human T 50.0 8.7 0.0003 24.1 1.9 19 29-47 37-55 (137)
4 4gnt_B Carbohydrate-responsive 7.3 1.4E+02 0.0048 13.1 0.6 8 103-110 4-11 (26)
5 1jhg_A Trp operon repressor; c 6.8 94 0.0032 18.6 -0.2 15 95-109 68-82 (101)
6 1nov_D Nodamura virus coat pro 6.5 3.3E+02 0.011 13.7 3.0 13 36-48 4-16 (44)
7 2l5r_A Antimicrobial peptide a 4.9 3.2E+02 0.011 11.7 2.2 12 39-50 2-13 (26)
8 1b9u_A Protein (ATP synthase); 4.8 3.6E+02 0.012 12.0 3.2 16 4-19 6-21 (34)
9 2z2q_B Coat protein gamma; wil 4.4 4.8E+02 0.016 13.0 3.2 39 36-89 4-42 (44)
10 4f35_D Transporter, NADC famil 3.9 1E+03 0.035 17.2 3.9 16 38-53 421-436 (449)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.37 E-value=4.4e-12 Score=94.79 Aligned_cols=107 Identities=17% Similarity=0.278 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHhc-ccCc--ccCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHH
Q 038369 1 MSAMIIASWFIVIGQFVYLFGG-WCPN--TWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEI 77 (111)
Q Consensus 1 Aiat~is~~~~~~~l~~y~~~~-~~~~--~~~~~~~~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~l 77 (111)
|+||.+++++..++...+++++ +.++ .++++.+++++.+|+++|+|+|..++...+...+.+...+++++| +.++
T Consensus 196 a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~v 273 (460)
T 3mkt_A 196 GVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVV 273 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHH
Confidence 4789999999998888887765 3222 234444566788899999999999999999999999999999999 7899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038369 78 SSFSICLNIISWEFMLVFGFLAASGYVSKNDH 109 (111)
Q Consensus 78 AA~~I~~n~~~l~f~~~~gl~~A~sirVg~~l 109 (111)
|+++++.++.++.++++.|++.+...++|+++
T Consensus 274 a~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~ 305 (460)
T 3mkt_A 274 AAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=97.79 E-value=4.2e-05 Score=56.76 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=65.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038369 34 AAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISWEFMLVFGFLAASGYVSKND 108 (111)
Q Consensus 34 ~~~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l~f~~~~gl~~A~sirVg~~ 108 (111)
...+..|+++|.++|..+........-.+-+.+++++| ++++++.+++.++..+...+..|++.+.+..++++
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~ 78 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQL 78 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999 77899999999999998999999999998888775
No 3
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=50.01 E-value=8.7 Score=24.12 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=15.9
Q ss_pred CCCCHHHHhhHHHHHHHHH
Q 038369 29 KGFSSAAFADLYPVLKLSI 47 (111)
Q Consensus 29 ~~~~~~~~~~~~~~l~lg~ 47 (111)
.+.+..||+.+|+++|+++
T Consensus 37 PgPS~fDFhqLr~fLklAl 55 (137)
T 1jvr_A 37 PGPSDFDFQQLRRFLKLAL 55 (137)
T ss_dssp CCCSTTTHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHh
Confidence 4567788999999999886
No 4
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=7.33 E-value=1.4e+02 Score=13.09 Aligned_cols=8 Identities=13% Similarity=0.040 Sum_probs=5.2
Q ss_pred HHHhhhhc
Q 038369 103 YVSKNDHF 110 (111)
Q Consensus 103 irVg~~l~ 110 (111)
+|..|++|
T Consensus 4 irlnnaiw 11 (26)
T 4gnt_B 4 IRLNNAIW 11 (26)
T ss_dssp HHHHHHHH
T ss_pred hhhhhHHH
Confidence 56667666
No 5
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=6.76 E-value=94 Score=18.57 Aligned_cols=15 Identities=20% Similarity=-0.009 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhhh
Q 038369 95 FGFLAASGYVSKNDH 109 (111)
Q Consensus 95 ~gl~~A~sirVg~~l 109 (111)
+|+|.++-+|+.+++
T Consensus 68 lGiS~stISRi~r~L 82 (101)
T 1jhg_A 68 LGAGIATITRGSNSL 82 (101)
T ss_dssp HCCCHHHHHHHHHHH
T ss_pred HCCChhhhhHHHHHH
Confidence 466777777776543
No 6
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=6.54 E-value=3.3e+02 Score=13.66 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=8.6
Q ss_pred HhhHHHHHHHHHH
Q 038369 36 FADLYPVLKLSIS 48 (111)
Q Consensus 36 ~~~~~~~l~lg~P 48 (111)
|++.++++|-++-
T Consensus 4 WErVk~ilks~l~ 16 (44)
T 1nov_D 4 WERVRSILKSGLN 16 (44)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777776653
No 7
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=4.90 E-value=3.2e+02 Score=11.75 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 038369 39 LYPVLKLSISSG 50 (111)
Q Consensus 39 ~~~~l~lg~P~~ 50 (111)
+++++|-|+-+-
T Consensus 2 lkeifkaglgsl 13 (26)
T 2l5r_A 2 LKEIFKAGLGSL 13 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHH
Confidence 466777666553
No 8
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=4.77 E-value=3.6e+02 Score=12.05 Aligned_cols=16 Identities=6% Similarity=0.110 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 038369 4 MIIASWFIVIGQFVYL 19 (111)
Q Consensus 4 t~is~~~~~~~l~~y~ 19 (111)
|.+.+.++.+++.+.+
T Consensus 6 ~l~~~~i~Flil~~~l 21 (34)
T 1b9u_A 6 TILGQAIAFVLFVLFC 21 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666655444
No 9
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=4.36 E-value=4.8e+02 Score=13.01 Aligned_cols=39 Identities=8% Similarity=0.147 Sum_probs=22.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH
Q 038369 36 FADLYPVLKLSISSGVMICLEFWYNALLVLLAGHMKNATIEISSFSICLNIISW 89 (111)
Q Consensus 36 ~~~~~~~l~lg~P~~~~~~~E~~~f~~~~~~~g~lg~~~~~lAA~~I~~n~~~l 89 (111)
|++.++++|-|+-. .+.+=|..| ..+..-|++.--+..+
T Consensus 4 WErVk~ilks~l~a-------------~S~iPGPVG--~~asGi~~l~~l~~~l 42 (44)
T 2z2q_B 4 WERVKSIIKSSLAA-------------ASNIPGPIG--VAASGISGLSALFEGF 42 (44)
T ss_pred HHHHHHHHHHHHHH-------------HhcCCCchh--HHHHhHHHHHHHHHHh
Confidence 56677777766532 223335566 5666666665544443
No 10
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=3.94 E-value=1e+03 Score=17.16 Aligned_cols=16 Identities=0% Similarity=0.133 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 038369 38 DLYPVLKLSISSGVMI 53 (111)
Q Consensus 38 ~~~~~l~lg~P~~~~~ 53 (111)
..++++|.|+|..+..
T Consensus 421 ~~~d~~k~G~~~~~~~ 436 (449)
T 4f35_D 421 KQSEMMRVGLYLNIAC 436 (449)
T ss_dssp GTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4588999999987643
Done!