Query 038369
Match_columns 111
No_of_seqs 149 out of 1033
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 17:47:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038369.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038369hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 42.3 6.3 0.00046 23.5 1.9 19 29-47 37-55 (137)
2 d1jhga_ a.4.12.1 (A:) Trp repr 16.2 13 0.00097 21.1 -0.2 15 95-109 68-82 (101)
3 d1v54m_ f.23.7.1 (M:) Mitochon 6.9 1.5E+02 0.011 13.7 2.9 20 78-97 13-32 (43)
4 d1ikpa3 f.1.5.1 (A:252-394) Ex 6.0 1.5E+02 0.011 17.0 1.9 12 72-83 3-14 (143)
5 d1eysh2 f.23.10.1 (H:7-43) Pho 4.6 2E+02 0.015 12.8 3.6 21 6-26 11-31 (37)
6 d1ikpa2 d.166.1.1 (A:395-606) 3.4 71 0.0051 19.5 -1.0 19 65-85 41-59 (212)
7 d1vh4a_ b.80.6.1 (A:) Stabiliz 2.5 2.2E+02 0.016 18.8 0.8 17 33-49 19-35 (413)
8 d1aila_ a.16.1.1 (A:) N-termin 2.4 2E+02 0.015 14.4 0.3 6 16-21 15-20 (70)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 2.0 3.8E+02 0.027 10.9 3.1 12 6-17 4-15 (30)
10 d1y9ia_ a.195.1.1 (A:) Low tem 2.0 5.7E+02 0.041 14.9 2.0 12 96-107 144-155 (159)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=42.26 E-value=6.3 Score=23.51 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=15.9
Q ss_pred CCCCHHHHhhHHHHHHHHH
Q 038369 29 KGFSSAAFADLYPVLKLSI 47 (111)
Q Consensus 29 ~~~~~~~~~~~~~~l~lg~ 47 (111)
.+.+..||..+|+++|+++
T Consensus 37 PgPS~~DF~qLr~flklal 55 (137)
T d1jvra_ 37 PGPSDFDFQQLRRFLKLAL 55 (137)
T ss_dssp CCCSTTTHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHHHHHHHH
Confidence 4566788999999999986
No 2
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=16.15 E-value=13 Score=21.05 Aligned_cols=15 Identities=20% Similarity=-0.009 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhh
Q 038369 95 FGFLAASGYVSKNDH 109 (111)
Q Consensus 95 ~gl~~A~sirVg~~l 109 (111)
.|.|.|+-+|+.|++
T Consensus 68 ~gvs~aTItR~s~~L 82 (101)
T d1jhga_ 68 LGAGIATITRGSNSL 82 (101)
T ss_dssp HCCCHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHH
Confidence 578889999998875
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.90 E-value=1.5e+02 Score=13.75 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038369 78 SSFSICLNIISWEFMLVFGF 97 (111)
Q Consensus 78 AA~~I~~n~~~l~f~~~~gl 97 (111)
+-+.|.+....+.|..|-|-
T Consensus 13 ~E~aigLt~~f~~~L~PaGw 32 (43)
T d1v54m_ 13 KEQAIGLSVTFLSFLLPAGW 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHH
Confidence 34668888888889888764
No 4
>d1ikpa3 f.1.5.1 (A:252-394) Exotoxin A, middle domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.04 E-value=1.5e+02 Score=16.95 Aligned_cols=12 Identities=8% Similarity=0.434 Sum_probs=7.6
Q ss_pred chHHHHHHHHHH
Q 038369 72 NATIEISSFSIC 83 (111)
Q Consensus 72 ~~~~~lAA~~I~ 83 (111)
++-.+++||++|
T Consensus 3 ~smsAL~AH~~C 14 (143)
T d1ikpa3 3 GSLAALTAHQAC 14 (143)
T ss_dssp CHHHHHHHHHHH
T ss_pred chHHHHHHHHhh
Confidence 344567788774
No 5
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.64 E-value=2e+02 Score=12.75 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhcccCc
Q 038369 6 IASWFIVIGQFVYLFGGWCPN 26 (111)
Q Consensus 6 is~~~~~~~l~~y~~~~~~~~ 26 (111)
-.-|+-...+++|+.+...|+
T Consensus 11 y~Fw~FFagLi~YL~rE~~RE 31 (37)
T d1eysh2 11 WAFWLFFFGLIIYLRREDKRE 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 345677777777776655454
No 6
>d1ikpa2 d.166.1.1 (A:395-606) Exotoxin A, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.40 E-value=71 Score=19.50 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=14.4
Q ss_pred HHHhhcCchHHHHHHHHHHHH
Q 038369 65 LLAGHMKNATIEISSFSICLN 85 (111)
Q Consensus 65 ~~~g~lg~~~~~lAA~~I~~n 85 (111)
.++|+.| +.-.|||+|++.
T Consensus 41 VFVGYHG--T~~~AAQsIV~~ 59 (212)
T d1ikpa2 41 VFVGYHG--TFLEAAQSIVFG 59 (212)
T ss_dssp EEEEEEE--ECHHHHHHHHHT
T ss_pred EEEeecc--chHHHHHHHHHh
Confidence 3568888 778889988753
No 7
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=2.53 E-value=2.2e+02 Score=18.77 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=12.5
Q ss_pred HHHHhhHHHHHHHHHHH
Q 038369 33 SAAFADLYPVLKLSISS 49 (111)
Q Consensus 33 ~~~~~~~~~~l~lg~P~ 49 (111)
.+..+.|.++.+.|+|.
T Consensus 19 ~~~~~~l~~f~~~GlPt 35 (413)
T d1vh4a_ 19 PQAQQHLQQLLRTGLPT 35 (413)
T ss_dssp HHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 34456788888899885
No 8
>d1aila_ a.16.1.1 (A:) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza A virus [TaxId: 11320]}
Probab=2.38 E-value=2e+02 Score=14.35 Aligned_cols=6 Identities=0% Similarity=-0.291 Sum_probs=2.5
Q ss_pred HHHHHh
Q 038369 16 FVYLFG 21 (111)
Q Consensus 16 ~~y~~~ 21 (111)
++.+++
T Consensus 15 LWHvRk 20 (70)
T d1aila_ 15 LWHVRK 20 (70)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.01 E-value=3.8e+02 Score=10.85 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 038369 6 IASWFIVIGQFV 17 (111)
Q Consensus 6 is~~~~~~~l~~ 17 (111)
|++.+....+..
T Consensus 4 i~yv~ifac~i~ 15 (30)
T d2axtt1 4 ITYVFIFACIIA 15 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred eehHHHHHHHHH
Confidence 444444433333
No 10
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=1.97 E-value=5.7e+02 Score=14.89 Aligned_cols=12 Identities=17% Similarity=0.044 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhh
Q 038369 96 GFLAASGYVSKN 107 (111)
Q Consensus 96 gl~~A~sirVg~ 107 (111)
|+..+++.|+.|
T Consensus 144 gi~Aa~~srlah 155 (159)
T d1y9ia_ 144 AIAAAAASRLAH 155 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 444444444444
Done!