BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038373
(475 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690
OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2
Length = 579
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 202/374 (54%), Positives = 273/374 (72%), Gaps = 6/374 (1%)
Query: 102 LLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK 161
++ LC+ ++AIE + D A + F L +SC NLKS+E K+VH+ S F
Sbjct: 212 VMRLCQRRLYKDAIELL--DKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRG 269
Query: 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMR 221
D +LNN +I M+G+C + A++VFD + +++ SWHLM+ Y+ NG G D L LFE+M
Sbjct: 270 DPKLNNMVISMFGECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMT 329
Query: 222 KTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHL 281
K G P++ETFL VF ACA+ ++E FL+F+ MKN++GI P EHY+ ++ VLG GHL
Sbjct: 330 KHGLKPNEETFLTVFLACATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHL 389
Query: 282 IEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPR 341
+EAE+++ +PFEPT + WEA+RN+A++HGD++LED EEL+ D+DPSKA+++KIP PP
Sbjct: 390 VEAEQYIRDLPFEPTADFWEAMRNYARLHGDIDLEDYMEELMVDVDPSKAVINKIPTPPP 449
Query: 342 KKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKE 401
K TNM+ K+R+ ++R+ Y+ E ++M G + YVPDTR+VLHDID+EAKE
Sbjct: 450 KSFKETNMVTSKSRILEFRNLTFYKDEAKEMAAKKGVV----YVPDTRFVLHDIDQEAKE 505
Query: 402 KALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRF 461
+AL YHSERLAIAYG+I TPPR L IIKNLR+CGDCHN IKIMSKI+GR LIVRDNKRF
Sbjct: 506 QALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRF 565
Query: 462 HHFRDGKCSCGDYW 475
HHF+DGKCSCGDYW
Sbjct: 566 HHFKDGKCSCGDYW 579
>sp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2
SV=1
Length = 537
Score = 305 bits (781), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 167/418 (39%), Positives = 247/418 (59%), Gaps = 26/418 (6%)
Query: 73 QEPKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-- 130
QE TG H Q + G++ L+ LD S+C+EGKV++A+E + + + GY V
Sbjct: 131 QENNTGGNHFQQDHS---GHSSLDELD----SICREGKVKKAVEII--KSWRNEGYVVDL 181
Query: 131 --FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQ 188
+ CG+ ++++ K VHE + +S + D+ N +IEMY C + A VF+
Sbjct: 182 PRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDISAYNSIIEMYSGCGSVEDALTVFNS 241
Query: 189 LRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
+ +RNL +W +I +A NGQG D + F + ++ G PD E F +F AC + EG
Sbjct: 242 MPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNKPDGEMFKEIFFACGVLGDMNEG 301
Query: 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQ 308
L+FE M +YGI+P +EHY++++K+L G+L EA FVE M EP V++WE L N ++
Sbjct: 302 LLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEALRFVESM--EPNVDLWETLMNLSR 359
Query: 309 IHGDVELEDRAEELLGDLDPSKAIVD-KIPLPPRK-----KQSATNMLEEKNRVSDYRST 362
+HGD+ L DR ++++ LD S+ + K L P K K+ M + N Y +
Sbjct: 360 VHGDLILGDRCQDMVEQLDASRLNKESKAGLVPVKSSDLVKEKLQRMAKGPNYGIRYMAA 419
Query: 363 -DLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGL 417
D+ R E Y +K L M E GYVP ++ LHD+D+E+K++ L H+ER A
Sbjct: 420 GDISRPENRELYMALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTF 479
Query: 418 ISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
+ TP R +R++KNLR+C DCHNA+K+MSKIVGRELI RD KRFHH +DG CSC +YW
Sbjct: 480 LDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 296 bits (758), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 153/371 (41%), Positives = 212/371 (57%), Gaps = 25/371 (6%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
+ +L +C L ++ +GK VH+L+R++ F + ++ LI MY KC + AR++FD +
Sbjct: 422 TITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM 481
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF 249
K+N +W+ MISGY +GQG + L +F +M +G P TFL V AC+ A VKEG
Sbjct: 482 TKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGD 541
Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
F M + YG P ++HY ++ +LG AGHL A +F+E M EP VWE L +I
Sbjct: 542 EIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRI 601
Query: 310 HGDVELEDRAEELLGDLDPSK----AIVDKIPLPPRK-KQSATNMLEEKNR--------- 355
H D L E L +LDP ++ I R Q+AT K R
Sbjct: 602 HKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYT 661
Query: 356 -----------VSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKAL 404
S +S + YEK++ L G+MREAGY P+T LHD++EE +E +
Sbjct: 662 LIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMV 721
Query: 405 QYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 464
+ HSERLAIA+GLI+T P +RIIKNLR+C DCH K++SKI R ++VRD RFHHF
Sbjct: 722 KVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHF 781
Query: 465 RDGKCSCGDYW 475
+DG CSCGDYW
Sbjct: 782 KDGVCSCGDYW 792
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 2/162 (1%)
Query: 150 VHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQ 209
+H S F+ ++ L +Y K ARK+FD+ +++L SW+ MISGY NG
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGL 400
Query: 210 GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYI 269
D + LF +M+K+ P+ T + +ACA A+ G +++++ I
Sbjct: 401 TEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRST-DFESSIYVST 459
Query: 270 AIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
A+I + G + EA + M + V W + + +HG
Sbjct: 460 ALIGMYAKCGSIAEARRLFDLMTKKNEV-TWNTMISGYGLHG 500
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 134 LLDSCGNLKSIEMGKRVHEL-LRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
+L + L+ + +G ++H L +T + D L I +Y KC ++ +F + RK
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTG-FISLYSKCGKIKMGSALFREFRKP 285
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL 233
++ +++ MI GY +NG+ L LF+++ +G T +
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLV 326
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAA 206
G+ +H ++ L + +++MY K ARKVFD++ +++ W+ MISGY
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197
Query: 207 NGQGADGLMLFEQM-RKTGPHPDKETFLVVFAACASAEAVKEG 248
N + + +F + ++ D T L + A A + ++ G
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLG 240
>sp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g25580
OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2
Length = 615
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/393 (40%), Positives = 233/393 (59%), Gaps = 26/393 (6%)
Query: 104 SLCKEGKVREAIEYMGQDASASAGYDV-FSSLL---DSCGNLKSIEMGKRVHELLRTSAF 159
+ CK GKV++A+ + D AS Y V S LL CG + ++ K VH + S
Sbjct: 228 AFCKHGKVKKALYTI--DILASMNYVVDLSRLLRLAKICGEAEGLQEAKTVHGKISASVS 285
Query: 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQ 219
D+ N+ L+EMY C A VF+++ ++NL +W ++I +A NG G D + +F +
Sbjct: 286 HLDLSSNHVLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSR 345
Query: 220 MRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAG 279
++ G PD + F +F AC V EG L+FE M DYGI P IE Y++++++ G
Sbjct: 346 FKEEGNIPDGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYALPG 405
Query: 280 HLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDK---- 335
L EA EFVERMP EP V+VWE L N +++HG++EL D E++ LDP++ ++K
Sbjct: 406 FLDEALEFVERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTR--LNKQSRE 463
Query: 336 --IPLPPR-------KKQSATNMLEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREA 382
IP+ KK+S + K+ + ++R+ D E ++ ++ L M E
Sbjct: 464 GFIPVKASDVEKESLKKRSGI-LHGVKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEV 522
Query: 383 GYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAI 442
GYV +TR LHDID+E+KE L HSER+A A ++++ PR P +IKNLR+C DCHNA+
Sbjct: 523 GYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNAL 582
Query: 443 KIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
KIMS IVGRE+I RD KRFH ++G C+C DYW
Sbjct: 583 KIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 221/370 (59%), Gaps = 26/370 (7%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
++SL +C + +E GK VH + S N L++MY K + ARK+FD+L
Sbjct: 265 YASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLA 324
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
KR++ SW+ +++ YA +G G + + FE+MR+ G P++ +FL V AC+ + + EG+
Sbjct: 325 KRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWH 384
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
Y+E+MK D GIVP HY+ ++ +LG AG L A F+E MP EPT +W+AL N ++H
Sbjct: 385 YYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMH 443
Query: 311 GDVELEDRAEELLGDLDP---------------------SKAIVDKIPLPPRKKQSATNM 349
+ EL A E + +LDP + + K+ KK+ A +
Sbjct: 444 KNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSW 503
Query: 350 LEEKNRVSDYRSTDLYRGEYE----KMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
+E +N + + + D + E K + + +++E GYVPDT +V+ +D++ +E LQ
Sbjct: 504 VEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQ 563
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
YHSE++A+A+ L++TPP + I KN+R+CGDCH AIK+ SK+VGRE+IVRD RFHHF+
Sbjct: 564 YHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFK 623
Query: 466 DGKCSCGDYW 475
DG CSC DYW
Sbjct: 624 DGNCSCKDYW 633
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 63/111 (56%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
+++LL C K + G+ VH + S F D+ + N L+ MY KC + ARKVF+++
Sbjct: 63 YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241
+R+ +W +ISGY+ + + D L+ F QM + G P++ T V A A+
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAA 173
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAA 206
G ++H F +V + + L+++Y + A+ VFD L RN SW+ +I+G+A
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239
Query: 207 NGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-FLYFEIMKNDYGIVPGI 265
L LF+ M + G P ++ +F AC+S +++G +++ ++K+ +V
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299
Query: 266 EHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
+ ++ + +G + +A + +R+ V W +L HG
Sbjct: 300 GN--TLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQHG 342
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 217/370 (58%), Gaps = 25/370 (6%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
FSS L +C ++ ++E+GK++H L + + N L+ MY KC + A +F ++
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+++ SW+ MI+GY+ +G G L FE M++ G PD T + V +AC+ V +G
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
YF M DYG++P +HY ++ +LG AG L +A ++ MPFEP +W L +++H
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591
Query: 311 GDVELEDRAEELLGDLDPSKA-----------------IVDKIPLPPR----KKQSATNM 349
G+ EL + A + + ++P + V K+ + R KK +
Sbjct: 592 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSW 651
Query: 350 LEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
+E +N+ + D + E + ++ L+ +M++AGYV T VLHD++EE KE+ ++
Sbjct: 652 IEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVR 711
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
YHSERLA+AYG++ P+R+IKNLR+C DCHNAIK M++I GR +I+RDN RFHHF+
Sbjct: 712 YHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFK 771
Query: 466 DGKCSCGDYW 475
DG CSCGDYW
Sbjct: 772 DGSCSCGDYW 781
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISG 203
+EM K + +++ ++V N +I Y +C A+ +FD++ KR+ SW MI+G
Sbjct: 328 MEMAKELFDVMP----CRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAG 383
Query: 204 YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-FLYFEIMKNDY--G 260
Y+ +G + L LF QM + G ++ +F + CA A++ G L+ ++K Y G
Sbjct: 384 YSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETG 443
Query: 261 IVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDR 318
G A++ + G + EA + + M + V W + HG E+ R
Sbjct: 444 CFVG----NALLLMYCKCGSIEEANDLFKEMAGKDIVS-WNTMIAGYSRHGFGEVALR 496
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 82/178 (46%), Gaps = 23/178 (12%)
Query: 161 KDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQM 220
+D+ N +I+ Y + N AR++F+ + +R++ SW+ M+SGYA NG D +F++M
Sbjct: 124 RDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM 183
Query: 221 RKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGH 280
P + ++ + +A ++E + F+ +N + +V + ++
Sbjct: 184 ----PEKNDVSWNALLSAYVQNSKMEEACMLFKSREN-WALVS----WNCLLGGFVKKKK 234
Query: 281 LIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPL 338
++EA +F + M V + +AQ G +D ++ + D+ P+
Sbjct: 235 IVEARQFFDSMNVRDVVSWNTIITGYAQS--------------GKIDEARQLFDESPV 278
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQ 219
V+DV N +I Y + AR++FD+ +++ +W M+SGY N + LF++
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 306
Query: 220 MRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP--GIEHYIAIIKVLGS 277
M P ++ ++ + A E + E+ K + ++P + + +I
Sbjct: 307 M----PERNEVSWNAMLAGYVQGERM-------EMAKELFDVMPCRNVSTWNTMITGYAQ 355
Query: 278 AGHLIEAEEFVERMP-------------FEPTVEVWEALRNFAQI 309
G + EA+ ++MP + + +EALR F Q+
Sbjct: 356 CGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 282 bits (721), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 224/396 (56%), Gaps = 27/396 (6%)
Query: 107 KEGKVREAIEYMGQDASASA--GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE 164
+ G+ EA+ Q +A G FSS++ +C +L ++ +GK++H + F ++
Sbjct: 320 QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIF 379
Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
+ + L++MY KC N + ARK+FD++ + SW +I G+A +G G + + LFE+M++ G
Sbjct: 380 IASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQG 439
Query: 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284
P++ F+ V AC+ V E + YF M YG+ +EHY A+ +LG AG L EA
Sbjct: 440 VKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEA 499
Query: 285 EEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK--AIV--------- 333
F+ +M EPT VW L + +H ++EL ++ E + +D A V
Sbjct: 500 YNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASN 559
Query: 334 ------DKIPLPPRK----KQSATNMLEEKNRVSDYRSTDLYRGEYEK----MKGLNGQM 379
K+ L RK K+ A + +E KN+ + S D +K +K + QM
Sbjct: 560 GRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQM 619
Query: 380 REAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCH 439
+ GYV DT VLHD+DEE K + L HSERLA+A+G+I+T P +R+ KN+RIC DCH
Sbjct: 620 EKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCH 679
Query: 440 NAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
AIK +SKI RE+IVRDN RFHHF G CSCGDYW
Sbjct: 680 VAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 4/182 (2%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
SS+L + GK +H + DV + + L++MY K + +VF +L
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-F 249
R+ SW+ +++GY NG+ + L LF QM P F V ACA + G
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364
Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
L+ +++ +G I A++ + G++ A + +RM V W A+ +
Sbjct: 365 LHGYVLRGGFG--SNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHAL 421
Query: 310 HG 311
HG
Sbjct: 422 HG 423
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 36/141 (25%)
Query: 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK------------ 175
++VF S+L SC + + G+ VH + D+ N L+ MY K
Sbjct: 105 HNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGN 164
Query: 176 --------------------CCNTRLA----RKVFDQLRKRNLSSWHLMISGYAANGQGA 211
C R+VF+ + ++++ S++ +I+GYA +G
Sbjct: 165 VFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYE 224
Query: 212 DGLMLFEQMRKTGPHPDKETF 232
D L + +M T PD T
Sbjct: 225 DALRMVREMGTTDLKPDSFTL 245
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 275 bits (703), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 146/355 (41%), Positives = 207/355 (58%), Gaps = 26/355 (7%)
Query: 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR-KRNLSSWHLMISGYA 205
GK++H S + V ++N LI MY K N A + FD +R +R+ SW MI A
Sbjct: 432 GKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALA 491
Query: 206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI 265
+G + L LFE M G PD T++ VF+AC A V +G YF++MK+ I+P +
Sbjct: 492 QHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTL 551
Query: 266 EHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGD 325
HY ++ + G AG L EA+EF+E+MP EP V W +L + ++H +++L A E L
Sbjct: 552 SHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLL 611
Query: 326 LDPSKA---------------------IVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDL 364
L+P + I + KK+ + +E K++V + D
Sbjct: 612 LEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDG 671
Query: 365 YRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLIST 420
E Y MK + ++++ GYVPDT VLHD++EE KE+ L++HSE+LAIA+GLIST
Sbjct: 672 THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731
Query: 421 PPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
P + LRI+KNLR+C DCH AIK +SK+VGRE+IVRD RFHHF+DG CSC DYW
Sbjct: 732 PDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 109 GKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELN 166
G+ +AI MG F+ ++L S + +E GK+VH + +V ++
Sbjct: 125 GQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVS 184
Query: 167 NKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQM 220
N L+ MY KC + +A+ VFD++ R++SSW+ MI+ + GQ + FEQM
Sbjct: 185 NSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 56/241 (23%)
Query: 118 MGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC 177
M +D+ S +S+L +C NL+ + +GK++H + T+ F + N LI MY +C
Sbjct: 269 MLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCG 328
Query: 178 NTRLARKVFDQ---------------------------------LRKRNLSSWHLMISGY 204
AR++ +Q L+ R++ +W MI GY
Sbjct: 329 GVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGY 388
Query: 205 AANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS-----------AEAVKEGFLYFE 253
+G + + LF M G P+ T + + +S AVK G +Y
Sbjct: 389 EQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSV 448
Query: 254 IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDV 313
+ N A+I + AG++ A + + E W ++ HG
Sbjct: 449 SVSN------------ALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 496
Query: 314 E 314
E
Sbjct: 497 E 497
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 131 FSSLLDSCGNL--KSIE------MGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182
S+LL+ C NL KS+ + VH + S + V L N L+ +Y K A
Sbjct: 9 LSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHA 68
Query: 183 RKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQM 220
RK+FD++ R SW+ ++S Y+ G F+Q+
Sbjct: 69 RKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQL 106
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 272 bits (695), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 223/396 (56%), Gaps = 27/396 (6%)
Query: 107 KEGKVREAIEYM--GQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE 164
+ GK EA+E Q A + S+L +CGN+ ++ G+ H + +V
Sbjct: 365 QNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVH 424
Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
+ + LI+MY KC L++ VF+ + +NL W+ +++G++ +G+ + + +FE + +T
Sbjct: 425 VGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR 484
Query: 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284
PD +F + +AC EG+ YF++M +YGI P +EHY ++ +LG AG L EA
Sbjct: 485 LKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544
Query: 285 EEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK-------------- 330
+ ++ MPFEP VW AL N ++ +V+L + A E L L+P
Sbjct: 545 YDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAK 604
Query: 331 -------AIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEY----EKMKGLNGQM 379
+I +K+ KK + ++ KNRV + D + EKM ++ +M
Sbjct: 605 GMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEM 664
Query: 380 REAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCH 439
R++G+ P+ + LHD++E+ +E+ L HSE+LA+ +GL++TP PL++IKNLRICGDCH
Sbjct: 665 RKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCH 724
Query: 440 NAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
IK +S GRE+ +RD RFHHF+DG CSCGD+W
Sbjct: 725 AVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 96/221 (43%), Gaps = 49/221 (22%)
Query: 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK---------------- 175
SS+L S G+ + + MG+ +H + +KD + + +I+MYGK
Sbjct: 256 SSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEM 315
Query: 176 ----CCN---TRLAR--------KVFDQLRKR----NLSSWHLMISGYAANGQGADGLML 216
CN T L+R ++F+ +++ N+ SW +I+G A NG+ + L L
Sbjct: 316 MEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALEL 375
Query: 217 FEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYG------IVPGIEHYIA 270
F +M+ G P+ T + AC + A+ G ++ +G ++ + A
Sbjct: 376 FREMQVAGVKPNHVTIPSMLPACGNIAALGHG-------RSTHGFAVRVHLLDNVHVGSA 428
Query: 271 IIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
+I + G + ++ MP + V W +L N +HG
Sbjct: 429 LIDMYAKCGRINLSQIVFNMMPTKNLV-CWNSLMNGFSMHG 468
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 79/188 (42%), Gaps = 38/188 (20%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
V +L C L + ++GK++H + S D + + MY +C ARKVFD++
Sbjct: 118 VLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRM 177
Query: 190 RKR-----------------------------------NLSSWHLMISGYAANGQGADGL 214
+ N+ SW+ ++SG+ +G + +
Sbjct: 178 SDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAV 237
Query: 215 MLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-FLYFEIMKNDYGIVPGIEHYIAIIK 273
++F+++ G PD+ T V + +E + G ++ ++K G++ A+I
Sbjct: 238 VMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQ--GLLKDKCVISAMID 295
Query: 274 VLGSAGHL 281
+ G +GH+
Sbjct: 296 MYGKSGHV 303
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 271 bits (693), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 224/369 (60%), Gaps = 26/369 (7%)
Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
S+L SC L S+++GK +H+ + +F K V++N LI+M+ KC + A +F+++R +
Sbjct: 235 SVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYK 294
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252
+ +W MI YA +G+ +++FE+MR PD+ TFL + AC+ V+EG YF
Sbjct: 295 DTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYF 354
Query: 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGD 312
M + +GIVP I+HY +++ +L AG+L +A EF++++P PT +W L H +
Sbjct: 355 SQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNN 414
Query: 313 VELEDRAEELLGDLDPSKA-----------------IVDKI--PLPPRK--KQSATNMLE 351
++L ++ E + +LD S VD + + RK K + +E
Sbjct: 415 LDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIE 474
Query: 352 EKNRVSDYRSTDLYRGEYEKM-KGLNGQMRE---AGYVPDTRYVLH-DIDEEAKEKALQY 406
N V ++ S D + K+ + L+ ++E +GYVPDT V+H +++++ KE L+Y
Sbjct: 475 VNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRY 534
Query: 407 HSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRD 466
HSE+LAI +GL++TPP +R++KNLR+C DCHNA K++S I GR++++RD +RFHHF D
Sbjct: 535 HSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFED 594
Query: 467 GKCSCGDYW 475
GKCSCGD+W
Sbjct: 595 GKCSCGDFW 603
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 2/184 (1%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F SLL +C K++E G+++H L +V + LI MY +C + AR VFD++
Sbjct: 132 FPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIV 191
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+ + ++ MI+GYA + + L LF +M+ P++ T L V ++CA ++ G
Sbjct: 192 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
+ K + ++ A+I + G L +A E+M ++ T + W A+ H
Sbjct: 252 IHKYAKK-HSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDT-QAWSAMIVAYANH 309
Query: 311 GDVE 314
G E
Sbjct: 310 GKAE 313
Score = 40.0 bits (92), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 134 LLDSCGNLKSIEMGKRVHELLRTSAF-----VKDVELNNKLIEMYGKC---CNTRLARKV 185
L+ C +L+ EL++ A+ ++DV KLI + + AR +
Sbjct: 35 LISKCNSLR---------ELMQIQAYAIKSHIEDVSFVAKLINFCTESPTESSMSYARHL 85
Query: 186 FDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAV 245
F+ + + ++ ++ M GY+ + LF ++ + G PD TF + ACA A+A+
Sbjct: 86 FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKAL 145
Query: 246 KEG 248
+EG
Sbjct: 146 EEG 148
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 271 bits (693), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 217/373 (58%), Gaps = 27/373 (7%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
+ SS+L +C + +E+G+ +H + + + + + L++MYGKC + + FD++
Sbjct: 312 MISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEM 371
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQM--RKTGPHPDKETFLVVFAACASAEAVKE 247
++NL + + +I GYA GQ L LFE+M R GP P+ TF+ + +AC+ A AV+
Sbjct: 372 PEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVEN 431
Query: 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFA 307
G F+ M++ YGI PG EHY I+ +LG AG + A EF+++MP +PT+ VW AL+N
Sbjct: 432 GMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNAC 491
Query: 308 QIHGDVELEDRAEELLGDLDP---------------------SKAIVDKIPLPPRKKQSA 346
++HG +L A E L LDP + + +++ KK +
Sbjct: 492 RMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAG 551
Query: 347 TNMLEEKNRVSDYRSTD----LYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEK 402
+ + KN+V +++ D L + + L +M AGY PD + L+D++EE K
Sbjct: 552 YSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAA 611
Query: 403 ALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFH 462
+ +HSE+LA+A+GL+S P +P+RI KNLRICGDCH+ K +S V RE+IVRDN RFH
Sbjct: 612 EVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFH 671
Query: 463 HFRDGKCSCGDYW 475
F+DG CSC DYW
Sbjct: 672 RFKDGICSCKDYW 684
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 11/204 (5%)
Query: 95 LESLDVNLLSLCKEGKVREAIEYM--GQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHE 152
LE+ + + + +G+ REAIE + F + L++C + + +G ++H
Sbjct: 174 LETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHG 233
Query: 153 LLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGAD 212
L+ S F DV + N LI+ YGKC R + +F ++ +N SW +++ Y N +
Sbjct: 234 LVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEK 293
Query: 213 GLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYI--- 269
+L+ + RK V +ACA ++ G + + + +E I
Sbjct: 294 ASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSI-----HAHAVKACVERTIFVG 348
Query: 270 -AIIKVLGSAGHLIEAEEFVERMP 292
A++ + G G + ++E+ + MP
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMP 372
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRL---ARKVF 186
F + +L+ GK++H L + DV + +MY C TRL ARK+F
Sbjct: 110 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMY---CKTRLRDDARKLF 166
Query: 187 DQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA 240
D++ +RNL +W+ IS +G+ + + F + R+ HP+ TF AC+
Sbjct: 167 DEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACS 220
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 129 DVFSSLLDSCGNLKSIEMGKRVH-ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD 187
D LL + + S+ +G+ VH +++T L N LI MY K + AR V
Sbjct: 7 DALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLR 66
Query: 188 QLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241
RN+ SW +ISG A NG + L+ F +MR+ G P+ TF F A AS
Sbjct: 67 LTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVAS 120
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 271 bits (693), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 223/375 (59%), Gaps = 29/375 (7%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
+++++L + ++ ++E G VH + DV + + L++MY KC A + F+ +
Sbjct: 621 MYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTM 680
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEG 248
RN SW+ MISGYA +GQG + L LFE M+ G P D TF+ V +AC+ A ++EG
Sbjct: 681 PVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEG 740
Query: 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWE-ALRNFA 307
F +FE M + YG+ P IEH+ + VLG AG L + E+F+E+MP +P V +W L
Sbjct: 741 FKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACC 800
Query: 308 QIHG-DVELEDRAEELLGDLDPSKAI---------------------VDKIPLPPRKKQS 345
+ +G EL +A E+L L+P A+ K+ KK++
Sbjct: 801 RANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEA 860
Query: 346 ATNMLEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKE 401
+ + K+ V + + D + Y+K+K LN +MR+AGYVP T + L+D+++E KE
Sbjct: 861 GYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKE 920
Query: 402 KALQYHSERLAIAYGLIST-PPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKR 460
+ L YHSE+LA+A+ L + +P+RI+KNLR+CGDCH+A K +SKI GR++I+RD+ R
Sbjct: 921 EILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNR 980
Query: 461 FHHFRDGKCSCGDYW 475
FHHF+DG CSC D+W
Sbjct: 981 FHHFQDGACSCSDFW 995
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 151 HELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQG 210
H L + KDV L N LI Y + ++ ARKVFD++ RN SW ++SGY+ NG+
Sbjct: 24 HSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEH 83
Query: 211 ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF---LYFEIMKNDYGIVPGIEH 267
+ L+ M K G ++ F+ V AC +V F ++ + K Y + + +
Sbjct: 84 KEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSN 143
Query: 268 YIAII--KVLGSAGHLIEA 284
+ + K +GS G+ + A
Sbjct: 144 VLISMYWKCIGSVGYALCA 162
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 144 IEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMIS 202
++ G+ VH + T+ V V + N L+ MY KC + AR+VF + ++ SW+ MI+
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT 388
Query: 203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-FLYFEIMKNDYGI 261
G NG + + ++ MR+ P T + ++CAS + K G ++ E +K GI
Sbjct: 389 GLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLK--LGI 446
Query: 262 VPGIEHYIAIIKVLGSAGHLIEAEEFVERMP 292
+ A++ + G+L E + MP
Sbjct: 447 DLNVSVSNALMTLYAETGYLNECRKIFSSMP 477
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 131 FSSLLDSCGNLKSIEM--GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT-RLARKVFD 187
F S+L +C + S+ + G+++H L+ ++ D ++N LI MY KC + A F
Sbjct: 105 FVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFG 164
Query: 188 QLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF-LVVFAACASAE 243
+ +N SW+ +IS Y+ G +F M+ G P + TF +V AC+ E
Sbjct: 165 DIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTE 221
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 13/176 (7%)
Query: 145 EMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL-RKRNLSSWHLMISG 203
E+GK++H L + + N LI YGKC K+F ++ +R+ +W+ MISG
Sbjct: 534 ELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISG 593
Query: 204 YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF-----EIMKND 258
Y N A L L M +TG D + V +A AS ++ G +++D
Sbjct: 594 YIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESD 653
Query: 259 YGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVE 314
+V G A++ + G L A F MP + W ++ + HG E
Sbjct: 654 --VVVG----SALVDMYSKCGRLDYALRFFNTMPVRNSYS-WNSMISGYARHGQGE 702
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 87 DPLRGNAQLESLDVNLLSLCKEGKVREAIE---YMGQDASASAGYDVFSSLLDSCGNLKS 143
D + N+ + LD N G EA+E M + + + SSL SC +LK
Sbjct: 379 DSVSWNSMITGLDQN-------GCFIEAVERYKSMRRHDILPGSFTLISSL-SSCASLKW 430
Query: 144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISG 203
++G+++H +V ++N L+ +Y + RK+F + + + SW+ +I
Sbjct: 431 AKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGA 490
Query: 204 YAANGQGA-DGLMLFEQMRKTGPHPDKETF 232
A + + + ++ F ++ G ++ TF
Sbjct: 491 LARSERSLPEAVVCFLNAQRAGQKLNRITF 520
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 118 MGQDASASAGYDVFSSLLDSCGNLK--SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175
M D S Y F SL+ + +L + + +++ ++ S + D+ + + L+ + K
Sbjct: 197 MQYDGSRPTEY-TFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAK 255
Query: 176 CCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQM 220
+ ARKVF+Q+ RN + + ++ G G + LF M
Sbjct: 256 SGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM 300
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 222/399 (55%), Gaps = 28/399 (7%)
Query: 105 LCKEGKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVHELLRTSAFVKD 162
+ GK EA+ + S D F+ SLL +C + ++ +GKRVH + ++
Sbjct: 197 FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 256
Query: 163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222
+ +N L+++Y +C A+ +FD++ +N SW +I G A NG G + + LF+ M
Sbjct: 257 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 316
Query: 223 T-GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHL 281
T G P + TF+ + AC+ VKEGF YF M+ +Y I P IEH+ ++ +L AG +
Sbjct: 317 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 376
Query: 282 IEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA---------- 331
+A E+++ MP +P V +W L +HGD +L + A + L+P+ +
Sbjct: 377 KKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMY 436
Query: 332 -----------IVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGE----YEKMKGLN 376
I ++ KK +++E NRV ++ D + Y K+K +
Sbjct: 437 ASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMT 496
Query: 377 GQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICG 436
G++R GYVP V D++EE KE A+ YHSE++AIA+ LISTP R P+ ++KNLR+C
Sbjct: 497 GRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCA 556
Query: 437 DCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
DCH AIK++SK+ RE++VRD RFHHF++G CSC DYW
Sbjct: 557 DCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 84/163 (51%), Gaps = 10/163 (6%)
Query: 86 NDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIE 145
N +RG A++ + ++ SL +E +V +E + L+ + + +
Sbjct: 89 NTLIRGYAEIGN-SISAFSLYREMRVSGLVE---------PDTHTYPFLIKAVTTMADVR 138
Query: 146 MGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYA 205
+G+ +H ++ S F + + N L+ +Y C + A KVFD++ +++L +W+ +I+G+A
Sbjct: 139 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFA 198
Query: 206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
NG+ + L L+ +M G PD T + + +ACA A+ G
Sbjct: 199 ENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 134 LLDSCGNL------KSIEMGKRVHEL-LRTSAFVKDVELNNKLIEMYGKCCN---TRLAR 183
+++ C NL SI +++H +R + D EL LI + A
Sbjct: 14 MVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73
Query: 184 KVFDQLRKR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVFAACAS 241
KVF ++ K N+ W+ +I GYA G L+ +MR +G PD T+ + A +
Sbjct: 74 KVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTT 133
Query: 242 AEAVKEG-FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVW 300
V+ G ++ ++++ +G + +++ +++ + + G + A + ++MP E + W
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQN--SLLHLYANCGDVASAYKVFDKMP-EKDLVAW 190
Query: 301 EALRN-FAQ 308
++ N FA+
Sbjct: 191 NSVINGFAE 199
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 225/412 (54%), Gaps = 28/412 (6%)
Query: 92 NAQLESLDVNLLSLCKEGKVREAIEY---MGQDASASAGYDVFSSLLDSCGNLKSIEMGK 148
N + S + + + G EAIE M ++ +A + S+L +C ++ G
Sbjct: 412 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM 471
Query: 149 RVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANG 208
++H L + DV + L +MYGKC A +F Q+ + N W+ +I+ + +G
Sbjct: 472 KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHG 531
Query: 209 QGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHY 268
G +MLF++M G PD TF+ + +AC+ + V EG FE+M+ DYGI P ++HY
Sbjct: 532 HGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHY 591
Query: 269 IAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP 328
++ + G AG L A +F++ M +P +W AL + ++HG+V+L A E L +++P
Sbjct: 592 GCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEP 651
Query: 329 SKAI-----------------VDKIPLPPR----KKQSATNMLEEKNRVSDYRSTD---- 363
VD+I +K + +E N+V + + +
Sbjct: 652 EHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHP 711
Query: 364 LYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPR 423
+Y Y ++ L +++ GYVPD R+VL D++++ KE L HSERLAIA+ LI+TP +
Sbjct: 712 MYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAK 771
Query: 424 MPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
+RI KNLR+CGDCH+ K +SKI RE+IVRD+ RFHHF++G CSCGDYW
Sbjct: 772 TTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 35/199 (17%)
Query: 106 CKEGKVREAIEYMGQ-----DASASAGYDVFS------------SLLDSCGNLKSIEMGK 148
CK G+ ++ +G ASA+A D + +L C NL+S K
Sbjct: 15 CKGGRFTRVLQSIGSVIREFSASANALQDCWKNGNESKEIDDVHTLFRYCTNLQS---AK 71
Query: 149 RVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANG 208
+H L S +++V ++ KL+ +Y N LAR FD ++ R++ +W+LMISGY G
Sbjct: 72 CLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAG 131
Query: 209 QGADGLMLFEQ-MRKTGPHPDKETFLVVFAACAS--------AEAVKEGFLYFEIMKNDY 259
++ + F M +G PD TF V AC + A+K GF++ D
Sbjct: 132 NSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMW------DV 185
Query: 260 GIVPGIEHYIAIIKVLGSA 278
+ + H + K +G+A
Sbjct: 186 YVAASLIHLYSRYKAVGNA 204
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 154 LRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADG 213
LR F++D+ + N ++ MY K AR VF+ L ++ SW+ +ISGYA NG ++
Sbjct: 375 LRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEA 434
Query: 214 LMLFEQMRKTGP-HPDKETFLVVFAACASAEAVKEGF-LYFEIMKNDYGIVPGIEHYIAI 271
+ ++ M + G ++ T++ V AC+ A A+++G L+ ++KN G+ + ++
Sbjct: 435 IEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN--GLYLDVFVVTSL 492
Query: 272 IKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVE 314
+ G G L +A ++P +V W L HG E
Sbjct: 493 ADMYGKCGRLEDALSLFYQIPRVNSVP-WNTLIACHGFHGHGE 534
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 16/168 (9%)
Query: 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD 187
Y F S+L +C +++ G ++H L F+ DV + LI +Y + AR +FD
Sbjct: 153 YRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFD 209
Query: 188 QLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE 247
++ R++ SW+ MISGY +G + L L +R D T + + +AC A
Sbjct: 210 EMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNR 265
Query: 248 GFLYFEIMKNDYGIVPGIEHYIAI----IKVLGSAGHLIEAEEFVERM 291
G + + Y I G+E + + I + G L + ++ +RM
Sbjct: 266 G-----VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRM 308
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 5/146 (3%)
Query: 88 PLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMG 147
P+R + S + + C+ G +EA+ + A V S LL +C G
Sbjct: 212 PVR---DMGSWNAMISGYCQSGNAKEALT-LSNGLRAMDSVTVVS-LLSACTEAGDFNRG 266
Query: 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAAN 207
+H ++ ++NKLI++Y + R +KVFD++ R+L SW+ +I Y N
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 208 GQGADGLMLFEQMRKTGPHPDKETFL 233
Q + LF++MR + PD T +
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLI 352
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 212/370 (57%), Gaps = 25/370 (6%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
S++L + + ++ +GK +H+ + DV + +I+MY KC ARK FD+++
Sbjct: 290 LSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK 349
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+N+ SW MI+GY +G A L LF M +G P+ TF+ V AAC+ A EG+
Sbjct: 350 NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWR 409
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
+F MK +G+ PG+EHY ++ +LG AG L +A + ++RM +P +W +L +IH
Sbjct: 410 WFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIH 469
Query: 311 GDVELEDRAEELLGDLDPSKA-----------------IVDKIPLPPRK----KQSATNM 349
+VEL + + L +LD S V+++ + + K ++
Sbjct: 470 KNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSL 529
Query: 350 LEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
LE V + D + YE + LN ++ EAGYV +T V HD+DEE KE L+
Sbjct: 530 LELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLR 589
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
HSE+LAIA+G+++T P + ++KNLR+C DCHN IK++SKIV RE +VRD KRFHHF+
Sbjct: 590 VHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFK 649
Query: 466 DGKCSCGDYW 475
DG CSCGDYW
Sbjct: 650 DGGCSCGDYW 659
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F + +C +L I GK+ H+ + D+ +++ LI MY C ARKVFD++
Sbjct: 79 FPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP 138
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL------VVFAACAS--A 242
KRN+ SW MI GY NG D + LF+ + D FL V +AC+ A
Sbjct: 139 KRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPA 198
Query: 243 EAVKEGFLYFEIMKN-DYGIVPG 264
+ + E F I + D G+ G
Sbjct: 199 KGLTESIHSFVIKRGFDRGVSVG 221
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC--NTRLARKVFDQLR 190
S++ +C + + + + +H + F + V + N L++ Y K +ARK+FDQ+
Sbjct: 188 SVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV 247
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGF 249
++ S++ ++S YA +G + +F ++ K + T V A + + A++ G
Sbjct: 248 DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGK 307
Query: 250 LYFEIMKNDYGIVPGIEHYI----AIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRN 305
+D I G+E + +II + G + A + +RM V W A+
Sbjct: 308 CI-----HDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIA 361
Query: 306 FAQIHG 311
+HG
Sbjct: 362 GYGMHG 367
Score = 40.4 bits (93), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
K ++ SW+ +I+ A +G A+ L+ F MRK +P + +F AC+S + G
Sbjct: 38 KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSG-- 95
Query: 251 YFEIMKNDYGIVPGIEHYI----AIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNF 306
+ V G + I A+I + + G L +A + + +P V +R +
Sbjct: 96 ---KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGY 152
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 268 bits (685), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 223/396 (56%), Gaps = 28/396 (7%)
Query: 107 KEGKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE 164
K G REAI+ + + D S S + +C + S+E + ++E + S + DV
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVF 359
Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
+++ LI+M+ KC + AR VFD+ R++ W MI GY +G+ + + L+ M + G
Sbjct: 360 ISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGG 419
Query: 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284
HP+ TFL + AC + V+EG+ +F M D+ I P +HY +I +LG AGHL +A
Sbjct: 420 VHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQA 478
Query: 285 EEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA------------- 331
E ++ MP +P V VW AL + + H VEL + A + L +DPS
Sbjct: 479 YEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAA 538
Query: 332 -IVDKIP-LPPRKKQSATN------MLEEKNRVSDYRSTDLYRGEYE----KMKGLNGQM 379
+ D++ + R K+ N +E + R+ +R D YE +++ + ++
Sbjct: 539 RLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRL 598
Query: 380 REAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCH 439
+E G+V + LHD+++E E+ L HSER+AIAYGLISTP PLRI KNLR C +CH
Sbjct: 599 KEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCH 658
Query: 440 NAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
A K++SK+V RE++VRD RFHHF+DG CSCGDYW
Sbjct: 659 AATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 14/279 (5%)
Query: 120 QDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT 179
Q A S F LL +C L ++MG+ VH + F DV + N LI +Y KC
Sbjct: 111 QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRL 170
Query: 180 RLARKVFD--QLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFA 237
AR VF+ L +R + SW ++S YA NG+ + L +F QMRK PD + V
Sbjct: 171 GSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLN 230
Query: 238 ACASAEAVKEG-FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPT 296
A + +K+G ++ ++K I P + I++ + G + A+ ++M P
Sbjct: 231 AFTCLQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAKILFDKMK-SPN 287
Query: 297 VEVWEAL-RNFAQIHGDVELEDRAEELLG-DLDPSKAIVDKIPLPPRKKQSA-TNMLEEK 353
+ +W A+ +A+ E D E++ D+ P D I + A LE+
Sbjct: 288 LILWNAMISGYAKNGYAREAIDMFHEMINKDVRP-----DTISITSAISACAQVGSLEQA 342
Query: 354 NRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVL 392
+ +Y YR + L + G V R V
Sbjct: 343 RSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVF 381
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 6/208 (2%)
Query: 107 KEGKVREAIEYMGQ--DASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE 164
+ G+ EA+E Q + S+L++ L+ ++ G+ +H + + +
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258
Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
L L MY KC A+ +FD+++ NL W+ MISGYA NG + + +F +M
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD 318
Query: 225 PHPDKETFLVVFAACASAEAVKEGFLYFE-IMKNDYGIVPGIEHYIAIIKVLGSAGHLIE 283
PD + +ACA ++++ +E + ++DY I A+I + G +E
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISS--ALIDMFAKCGS-VE 375
Query: 284 AEEFVERMPFEPTVEVWEALRNFAQIHG 311
V + V VW A+ +HG
Sbjct: 376 GARLVFDRTLDRDVVVWSAMIVGYGLHG 403
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 13/178 (7%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
++SL+DS + + K++H L L KLI + AR+VFD L
Sbjct: 24 YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLP 80
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-F 249
+ + W+ +I GY+ N D L+++ M+ PD TF + AC+ ++ G F
Sbjct: 81 RPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRF 140
Query: 250 LYFEIMK----NDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
++ ++ + D + G+ A + LGSA + E ER T+ W A+
Sbjct: 141 VHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPER-----TIVSWTAI 193
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 268 bits (684), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 227/404 (56%), Gaps = 30/404 (7%)
Query: 102 LLSLC-KEGKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVHELLRTSA 158
L++C + G A+EY + + + +D F+ S+L +CG L S+E+G+ +++ R
Sbjct: 181 FLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEE 240
Query: 159 FVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFE 218
++ + N ++M+ KC NT AR +F+++++RN+ SW MI GYA NG + L LF
Sbjct: 241 IDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFT 300
Query: 219 QMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIM--KNDYGIVPGIEHYIAIIKVLG 276
M+ G P+ TFL V +AC+ A V EG YF +M ND + P EHY ++ +LG
Sbjct: 301 TMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLG 360
Query: 277 SAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA----- 331
+G L EA EF+++MP EP +W AL +H D+ L + ++L + P
Sbjct: 361 RSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVL 420
Query: 332 ------------IVDKIPLPPRK----KQSATNMLEEKNRVSDYRSTD----LYRGEYEK 371
VDK+ RK K +A + +E + ++ + D + YEK
Sbjct: 421 LSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEK 480
Query: 372 MKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKN 431
+ + ++R+ GYVPDT V HD++ E KE +L +HSE+LAIA+GLI P P+R++KN
Sbjct: 481 LDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKN 540
Query: 432 LRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
LR C DCH K +S + E+I+RD RFHHFR+G CSC ++W
Sbjct: 541 LRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 115/275 (41%), Gaps = 47/275 (17%)
Query: 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAAN 207
K++H ++ + F + L +L+E + AR+VFD++ K + W+ + GY N
Sbjct: 28 KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87
Query: 208 GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF-LYFEIMKNDYGIVPGIE 266
+ L+L+++MR G PD+ T+ V A + GF L+ ++K +G + +
Sbjct: 88 QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVA 147
Query: 267 HYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWE--------------ALRNFAQIHGD 312
+ ++ + G L AE E M + V W AL F ++ D
Sbjct: 148 TELVMMYM--KFGELSSAEFLFESMQVKDLV-AWNAFLAVCVQTGNSAIALEYFNKMCAD 204
Query: 313 VELEDRAEEL--------LGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYR---S 361
D + LG L+ + I D+ RK++ N++ E R+ + +
Sbjct: 205 AVQFDSFTVVSMLSACGQLGSLEIGEEIYDR----ARKEEIDCNIIVENARLDMHLKCGN 260
Query: 362 TDLYRGEYEKMK--------------GLNGQMREA 382
T+ R +E+MK +NG REA
Sbjct: 261 TEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREA 295
>sp|Q9C6G2|PPR63_ARATH Pentatricopeptide repeat-containing protein At1g29710,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=1
SV=1
Length = 475
Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/430 (35%), Positives = 235/430 (54%), Gaps = 26/430 (6%)
Query: 63 KKQRNPSSNEQEPKTGTGHSQNTNDP-LRGNAQLESLDVNLLSLCKEGKVREAIEYMGQD 121
+ +RN + + + G + T P + N +E+ D SLC +G REA+E + D
Sbjct: 55 RYKRNVAGHTLTQNSMVGQYKTTVSPSVAQNVTIETFD----SLCIQGNWREAVEVL--D 108
Query: 122 ASASAGYDV----FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC 177
+ GY + L CG +++E + VHE + DV N +IEMY CC
Sbjct: 109 YLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECIIALVSPCDVGARNAIIEMYSGCC 168
Query: 178 NTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFA 237
+ A KVF+++ + N + +M+ + NG G + + LF + ++ G P+ E F VF+
Sbjct: 169 SVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEGNKPNGEIFNQVFS 228
Query: 238 ACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTV 297
C VKEG L F+ M +YGIVP +EHY ++ K+L ++GHL EA FVERMP EP+V
Sbjct: 229 TCTLTGDVKEGSLQFQAMYREYGIVPSMEHYHSVTKMLATSGHLDEALNFVERMPMEPSV 288
Query: 298 EVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLE------ 351
+VWE L N +++HGDVEL DR EL+ LD ++ +DK+ A++ ++
Sbjct: 289 DVWETLMNLSRVHGDVELGDRCAELVEKLDATR--LDKVSSAGLVATKASDFVKKEPSTR 346
Query: 352 -EKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDI-DEEAKEKALQ 405
E S +R D + YE + L Q++E GYVPDTRY I E KE+
Sbjct: 347 SEPYFYSTFRPVDSSHPQMNIIYETLMSLRSQLKEMGYVPDTRYYRSLIMAMENKEQIFG 406
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
Y E +A+ L+ + PR + ++ N+RI GDCH+ +K+MS I GR++I RD K +H F+
Sbjct: 407 YR-EEIAVVESLLKSKPRSAITLLTNIRIVGDCHDMMKLMSVITGRDMIKRDAKIYHLFK 465
Query: 466 DGKCSCGDYW 475
+G C C + W
Sbjct: 466 NGVCRCNNLW 475
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 207/366 (56%), Gaps = 25/366 (6%)
Query: 135 LDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNL 194
+ +C N+ S+E G + H TS + V ++N L+ +YGKC + + ++F+++ R+
Sbjct: 378 ISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437
Query: 195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI 254
SW M+S YA G+ + + LF++M + G PD T V +AC+ A V++G YF++
Sbjct: 438 VSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKL 497
Query: 255 MKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVE 314
M ++YGIVP I HY +I + +G L EA F+ MPF P W L + + G++E
Sbjct: 498 MTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLE 557
Query: 315 LEDRAEELLGDLDP--------------SKAIVDKIPLPPR-------KKQSATNMLEEK 353
+ A E L +LDP SK D + R KK+ + ++ K
Sbjct: 558 IGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWK 617
Query: 354 NRVSDYRSTD----LYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSE 409
++ + + D Y K++ LN ++ + GY PDT +V HD++E K K L YHSE
Sbjct: 618 GKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSE 677
Query: 410 RLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKC 469
RLAIA+GLI P P+R+ KNLR+C DCHNA K +S + GRE++VRD RFH F+DG C
Sbjct: 678 RLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTC 737
Query: 470 SCGDYW 475
SCGD+W
Sbjct: 738 SCGDFW 743
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 11/216 (5%)
Query: 105 LCKEGKVREAIEYMGQDASASAGYDV--FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD 162
L + G +EAIE + D F S+L +CG L +I GK++H + + F
Sbjct: 245 LAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH 304
Query: 163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222
+ + + LI+MY KC A+ VFD+++++N+ SW M+ GY G+ + + +F M++
Sbjct: 305 IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQR 364
Query: 223 TGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAI----IKVLGSA 278
+G PD T +ACA+ +++EG + + I G+ HY+ + + + G
Sbjct: 365 SGIDPDHYTLGQAISACANVSSLEEGSQF-----HGKAITSGLIHYVTVSNSLVTLYGKC 419
Query: 279 GHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVE 314
G + ++ M V + +AQ VE
Sbjct: 420 GDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVE 455
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 17/202 (8%)
Query: 109 GKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK 168
G +A M +D SA+ ++L + + +GK++H + F + + +
Sbjct: 120 GAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSP 179
Query: 169 LIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD 228
L+ MY A+KVF L RN ++ ++ G A G D L LF M K D
Sbjct: 180 LLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEK-----D 234
Query: 229 KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEH----YIAIIKVLGSAGHLIEA 284
++ + A KE F MK V G++ + +++ G G + E
Sbjct: 235 SVSWAAMIKGLAQNGLAKEAIECFREMK-----VQGLKMDQYPFGSVLPACGGLGAINEG 289
Query: 285 EEF---VERMPFEPTVEVWEAL 303
++ + R F+ + V AL
Sbjct: 290 KQIHACIIRTNFQDHIYVGSAL 311
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
L N ++ Y ++ AR+VFD++ + NL SW+ ++ Y+ G ++ FE++
Sbjct: 43 LYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKL---- 98
Query: 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284
P D T+ V+ + + V + M D+ + ++K+ S GH+
Sbjct: 99 PDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLG 158
Query: 285 EEF---VERMPFEPTVEV 299
++ V ++ FE + V
Sbjct: 159 KQIHGQVIKLGFESYLLV 176
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 211/369 (57%), Gaps = 25/369 (6%)
Query: 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK 191
++L + L ++E G+++H D + L++MY KC + A +F ++
Sbjct: 622 ATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEM 681
Query: 192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251
N+++W+ M+ G A +G+G + L LF+QM+ G PDK TF+ V +AC+ + V E + +
Sbjct: 682 MNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKH 741
Query: 252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
M DYGI P IEHY + LG AG + +AE +E M E + ++ L ++ G
Sbjct: 742 MRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQG 801
Query: 312 DVELEDRAEELLGDLDP--SKAIV------------DKIPLPPR-------KKQSATNML 350
D E R L +L+P S A V D++ L KK + +
Sbjct: 802 DTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWI 861
Query: 351 EEKNR----VSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQY 406
E KN+ V D RS Y K+K + +++ GYVP+T + L D++EE KE+AL Y
Sbjct: 862 EVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYY 921
Query: 407 HSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRD 466
HSE+LA+A+GL+STPP P+R+IKNLR+CGDCHNA+K ++K+ RE+++RD RFH F+D
Sbjct: 922 HSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKD 981
Query: 467 GKCSCGDYW 475
G CSCGDYW
Sbjct: 982 GICSCGDYW 990
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
+++ +CG L +I GK+VH S + D+ +++ +++MY KC + A+ FD +
Sbjct: 520 LATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIP 579
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
+ +W MISG NG+ +F QMR G PD+ T + A + A+++G
Sbjct: 580 VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG 637
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F +L + + S+ +G++VH + + ++N LI MY K AR VFD +
Sbjct: 318 FILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMS 377
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241
+R+L SW+ +I+G A NG + + LF Q+ + G PD+ T V A +S
Sbjct: 378 ERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS 428
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 15/167 (8%)
Query: 146 MGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYA 205
+GK H + T + L N LI MY KC + AR+VFD++ R+L SW+ +++ YA
Sbjct: 57 LGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116
Query: 206 ANGQGA-----DGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYG 260
+ + +LF +R+ + + T + C + G+++ + Y
Sbjct: 117 QSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLC-----LHSGYVWASESFHGYA 171
Query: 261 IVPGI--EHYI--AIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
G+ + ++ A++ + G + E + E MP+ V +W +
Sbjct: 172 CKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVV-LWNLM 217
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 132 SSLLDSCGNL-KSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
+S+L + +L + + + K+VH V D ++ LI+ Y + + A +F++
Sbjct: 420 TSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-H 478
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
+L +W+ M++GY + G L LF M K G D T VF C A+ +G
Sbjct: 479 NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQG 536
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 229/408 (56%), Gaps = 28/408 (6%)
Query: 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVHE 152
L S + +L + G+ +A+ Y Q S + D F+ S++ + L K +H
Sbjct: 403 LVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHG 462
Query: 153 LLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGAD 212
++ S K+V + L++MY KC +AR +FD + +R++++W+ MI GY +G G
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522
Query: 213 GLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAII 272
L LFE+M+K P+ TFL V +AC+ + V+ G F +MK +Y I ++HY A++
Sbjct: 523 ALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMV 582
Query: 273 KVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP---- 328
+LG AG L EA +F+ +MP +P V V+ A+ QIH +V ++A E L +L+P
Sbjct: 583 DLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGG 642
Query: 329 ----------SKAIVDKIPL-------PPRKKQSATNMLEEKNRVSDYRSTDLYRGE--- 368
+ ++ +K+ +K +M+E KN V + S +
Sbjct: 643 YHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKK 702
Query: 369 -YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLR 427
Y ++ L ++EAGYVPDT VL ++ + KE+ L HSE+LAI++GL++T +
Sbjct: 703 IYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIH 761
Query: 428 IIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
+ KNLR+C DCHNA K +S + GRE++VRD +RFHHF++G CSCGDYW
Sbjct: 762 VRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 135 LDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNL 194
L +C +L +E G+ +H+L ++V + N LI MY KC A +F +L+ R L
Sbjct: 344 LHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTL 403
Query: 195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-FLYFE 253
SW+ MI G+A NG+ D L F QMR PD T++ V A A +++
Sbjct: 404 VSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGV 463
Query: 254 IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
+M++ + + A++ + G ++ A + M E V W A+ + HG
Sbjct: 464 VMRS--CLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS-ERHVTTWNAMIDGYGTHG 518
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 10/177 (5%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F+ LL CG+ + +GK +H LL S F D+ L MY KC ARKVFD++
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMP 197
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+R+L SW+ +++GY+ NG L + + M + P T + V A ++ + G
Sbjct: 198 ERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG-- 255
Query: 251 YFEIMKNDYGIVPGIEHYI----AIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
EI + Y + G + + A++ + G L A + + M E V W ++
Sbjct: 256 -KEI--HGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM-LERNVVSWNSM 308
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 107 KEGKVREAIEYMGQ--DASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE 164
+ G R A+E + + + + S+L + L+ I +GK +H S F V
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272
Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
++ L++MY KC + AR++FD + +RN+ SW+ MI Y N + +++F++M G
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG 332
Query: 225 PHPDKETFLVVFAACASAEAVKEG 248
P + + ACA ++ G
Sbjct: 333 VKPTDVSVMGALHACADLGDLERG 356
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 14/164 (8%)
Query: 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRN 193
LL+ C +LK + +++ L+ + ++ KL+ ++ + + A +VF+ + +
Sbjct: 43 LLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99
Query: 194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVK-----EG 248
+H M+ G+A L F +MR P F + C ++ G
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159
Query: 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP 292
L D + G+E+ A + + EA + +RMP
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVN------EARKVFDRMP 197
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 264 bits (675), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 207/367 (56%), Gaps = 26/367 (7%)
Query: 135 LDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNL 194
L +C + ++E G+ +H +++S +V++ LI+MY KC + A VF+ ++++
Sbjct: 266 LSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDI 325
Query: 195 SSWHLMISGYAANGQGADGLMLFEQMRK-TGPHPDKETFLVVFAACASAEAVKEGFLYFE 253
+W+ MI+GYA +G D L LF +M+ TG P TF+ ACA A V EG FE
Sbjct: 326 VAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFE 385
Query: 254 IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDV 313
M +YGI P IEHY ++ +LG AG L A E ++ M + +W ++ ++HGD
Sbjct: 386 SMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDF 445
Query: 314 ELEDRAEELL---------------------GDLDPSKAIVDKIPLPPRKKQSATNMLEE 352
L E L GD + + + + K+ + +E
Sbjct: 446 VLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEI 505
Query: 353 KNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHS 408
+N+V ++R+ D + Y ++ ++ +++ GYVP+T VL D++E KE++LQ HS
Sbjct: 506 ENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHS 565
Query: 409 ERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGK 468
ERLAIAYGLIST P PL+I KNLR+C DCH K++SKI GR++++RD RFHHF DG
Sbjct: 566 ERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGS 625
Query: 469 CSCGDYW 475
CSCGD+W
Sbjct: 626 CSCGDFW 632
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 166 NNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG- 224
+ +I Y K N AR +FD + +R++ SW++MI GYA +G D LMLF+++ G
Sbjct: 195 STAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGK 254
Query: 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284
P PD+ T + +AC+ A++ G + + I ++ +I + G L EA
Sbjct: 255 PKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEA 313
Query: 285 EEFVERMPFEPTVEVWEALRNFAQIHG 311
P + V W A+ +HG
Sbjct: 314 VLVFNDTPRKDIV-AWNAMIAGYAMHG 339
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
LN KL Y R + +F Q +L + I+ + NG +L+ Q+ +
Sbjct: 66 LNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSE 125
Query: 225 PHPDKETFLVVFAACASAEAVKEG-FLYFEIMKNDYGIVPGIEHYIA--IIKVLGSAGHL 281
+P++ TF + +C++ K G ++ ++K GI P Y+A ++ V G +
Sbjct: 126 INPNEFTFSSLLKSCST----KSGKLIHTHVLKFGLGIDP----YVATGLVDVYAKGGDV 177
Query: 282 IEAEEFVERMPFEPTVEVWEALRNFAQIHGDVE 314
+ A++ +RMP V + +A+ G+VE
Sbjct: 178 VSAQKVFDRMPERSLVSSTAMITCYAK-QGNVE 209
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 262 bits (670), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 213/369 (57%), Gaps = 26/369 (7%)
Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
++L SC L ++ GK +H + DV + + L++MY KC +++RKVFDQ+ ++
Sbjct: 522 TILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK 581
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252
N+ +W+++I Y +G G + + L M G P++ TF+ VFAAC+ + V EG F
Sbjct: 582 NVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIF 641
Query: 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFE-PTVEVWEALRNFAQIHG 311
+MK DYG+ P +HY ++ +LG AG + EA + + MP + W +L ++IH
Sbjct: 642 YVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHN 701
Query: 312 DVELEDRAEELLGDLDP--------------SKAIVDKIPLPPR-------KKQSATNML 350
++E+ + A + L L+P S + DK R +K+ + +
Sbjct: 702 NLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWI 761
Query: 351 EEKNRVSDYRSTDLYRGEYEKMKG----LNGQMREAGYVPDTRYVLHDIDEEAKEKALQY 406
E + V + + D + EK+ G L +MR+ GYVPDT VLH+++E+ KE L
Sbjct: 762 EHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCG 821
Query: 407 HSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRD 466
HSE+LAIA+G+++T P +R+ KNLR+C DCH A K +SKIV RE+I+RD +RFH F++
Sbjct: 822 HSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKN 881
Query: 467 GKCSCGDYW 475
G CSCGDYW
Sbjct: 882 GTCSCGDYW 890
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 91 GNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVF--SSLLDSCGNLKSIEMGK 148
G L + + L SLC+ ++ EA+EY+ + D F SS+L +C +L+ + GK
Sbjct: 263 GGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322
Query: 149 RVHEL-LRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAAN 207
+H L+ + ++ + + L++MY C R+VFD + R + W+ MI+GY+ N
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382
Query: 208 GQGADGLMLFEQMRKT-GPHPDKETFLVVFAACASAEA 244
+ L+LF M ++ G + T V AC + A
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA 420
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAF-VKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
F +LL + +L+ +E+GK++H + + V V + N L+ +Y KC + KVFD++
Sbjct: 100 FPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRI 159
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241
+RN SW+ +IS + + L F M P T + V AC++
Sbjct: 160 SERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 211
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 94/210 (44%), Gaps = 17/210 (8%)
Query: 117 YMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174
++G + SA A + ++ +C + + +H + +D + N L++MY
Sbjct: 392 FIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYS 451
Query: 175 KCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMR-----------KT 223
+ +A ++F ++ R+L +W+ MI+GY + D L+L +M+ +
Sbjct: 452 RLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRV 511
Query: 224 GPHPDKETFLVVFAACASAEAVKEGF-LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLI 282
P+ T + + +CA+ A+ +G ++ +KN+ + A++ + G L
Sbjct: 512 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGS--ALVDMYAKCGCLQ 569
Query: 283 EAEEFVERMPFEPTVEVWEALRNFAQIHGD 312
+ + +++P + V W + +HG+
Sbjct: 570 MSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 13/166 (7%)
Query: 90 RGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNL---KSIEM 146
R SL +L S K EA M + + + + S ++ +C NL + + M
Sbjct: 162 RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVS-VVTACSNLPMPEGLMM 220
Query: 147 GKRVHELLRTSAFVKDVELN----NKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMIS 202
GK+VH + ++ ELN N L+ MYGK ++ + R+L +W+ ++S
Sbjct: 221 GKQVH-----AYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 275
Query: 203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
N Q + L +M G PD+ T V AC+ E ++ G
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 220/385 (57%), Gaps = 32/385 (8%)
Query: 120 QDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT 179
Q+ + +++L +C + ++ GK +H + S DV L N L++MYGKC
Sbjct: 329 QEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEV 388
Query: 180 RLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239
+R+VFD + ++L+SW++M++ YA NG + + LFE M ++G PD TF+ + + C
Sbjct: 389 EYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGC 448
Query: 240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEV 299
+ + G FE MK ++ + P +EHY ++ +LG AG + EA + +E MPF+P+ +
Sbjct: 449 SDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASI 508
Query: 300 WEALRNFAQIHGDVELEDRAEELLGDLDPSKA-----------------IVDKI--PLPP 340
W +L N ++HG+V + + A + L L+P VDKI +
Sbjct: 509 WGSLLNSCRLHGNVSVGEIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQ 568
Query: 341 R--KKQSATNMLEEKNRVS--------DYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRY 390
R KK++ + ++ K+++ ++R++D Y+ + + L + ++GY P+T
Sbjct: 569 RGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDEYKKVWTE---LQEAIEKSGYSPNTSV 625
Query: 391 VLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVG 450
VLHD+DEE K + HSERLA Y LI T +P+RI KNLR+C DCH+ +KI+S++
Sbjct: 626 VLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTR 685
Query: 451 RELIVRDNKRFHHFRDGKCSCGDYW 475
R +++RD KRFHHF DG CSC DYW
Sbjct: 686 RVIVLRDTKRFHHFVDGICSCKDYW 710
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 11/209 (5%)
Query: 103 LSLCKEGKVREA---IEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHEL-LRTSA 158
L L K K+ EA IE S + + ++ LL +C + KS+ G ++ L L +
Sbjct: 103 LGLSKSTKLDEAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIKICSLILNNPS 162
Query: 159 FVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSS---WHLMISGYAANGQGADGLM 215
+ +L +KLI ++ C LARK+FD + +L + W M GY+ NG D L+
Sbjct: 163 LRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALI 222
Query: 216 LFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-FLYFEIMKNDYGIVPGIEHYIAIIKV 274
++ M + P + V AC + ++ G ++ +I+K + + Y ++K+
Sbjct: 223 VYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVV--YNVLLKL 280
Query: 275 LGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
+G +A + + M E V W +L
Sbjct: 281 YMESGLFDDARKVFDGMS-ERNVVTWNSL 308
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 86/185 (46%), Gaps = 4/185 (2%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
S L +C +LK + +G+ +H + D + N L+++Y + ARKVFD +
Sbjct: 239 ISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMS 298
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF- 249
+RN+ +W+ +IS + + + LF +M++ T + AC+ A+ G
Sbjct: 299 ERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKE 358
Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
++ +I+K+ P + +++ + G G +E V + + W + N I
Sbjct: 359 IHAQILKSKEK--PDVPLLNSLMDMYGKCGE-VEYSRRVFDVMLTKDLASWNIMLNCYAI 415
Query: 310 HGDVE 314
+G++E
Sbjct: 416 NGNIE 420
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 206/370 (55%), Gaps = 25/370 (6%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
SS L C L ++++G+++H+++ S DV LI MY KC A K+F+ ++
Sbjct: 287 LSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK 346
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
K+++ +W+ MISGYA +G L LF +M PD TF+ V AC A V G
Sbjct: 347 KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMA 406
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
YFE M DY + P +HY ++ +LG AG L EA + + MPF P V+ L ++H
Sbjct: 407 YFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVH 466
Query: 311 GDVELEDRAEELLGDLDPSKA---------------IVDKIPLPPRKKQS------ATNM 349
+VEL + A E L L+ A D + R K+S +
Sbjct: 467 KNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSW 526
Query: 350 LEEKNRVSDYRSTDLYRGEYEKM----KGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
+E +N+V +RS+D E + + K L +M+ AGY P+ + LH+++EE KEK L
Sbjct: 527 IEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLL 586
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
+HSE+LA+A+G I P +++ KNLRICGDCH AIK +S+I RE+IVRD RFHHF+
Sbjct: 587 WHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFK 646
Query: 466 DGKCSCGDYW 475
DG CSCGDYW
Sbjct: 647 DGSCSCGDYW 656
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Query: 160 VKDVELNNKLIEMYGKCCNTRLARKVF-DQLRKRNLSSWHLMISGYAANGQGADGLMLFE 218
V+ V +I Y K LA +F D +NL +W+ MISGY N + DGL LF
Sbjct: 214 VRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFR 273
Query: 219 QMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA 278
M + G P+ C+ A++ G +I+ + + ++I +
Sbjct: 274 AMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKS-TLCNDVTALTSLISMYCKC 332
Query: 279 GHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVE 314
G L +A + E M + V W A+ + HG+ +
Sbjct: 333 GELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGNAD 367
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 9/137 (6%)
Query: 167 NKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH 226
N ++ Y + N A+ FD++ ++ +SW+ MI+GYA G+ LF M +
Sbjct: 128 NIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKN-E 186
Query: 227 PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEE 286
+ + C E +F++ V G+ + A+I A + AE
Sbjct: 187 VSWNAMISGYIECGDLEKASH---FFKV-----APVRGVVAWTAMITGYMKAKKVELAEA 238
Query: 287 FVERMPFEPTVEVWEAL 303
+ M + W A+
Sbjct: 239 MFKDMTVNKNLVTWNAM 255
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/371 (36%), Positives = 207/371 (55%), Gaps = 26/371 (7%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
FS + SC L + G++ H L F + N LI MY KC AR+VF +
Sbjct: 420 FSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMP 479
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+ SW+ +I+ +G GA+ + ++E+M K G PD+ T L V AC+ A V +G
Sbjct: 480 CLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRK 539
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
YF+ M+ Y I PG +HY +I +L +G +AE +E +PF+PT E+WEAL + ++H
Sbjct: 540 YFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVH 599
Query: 311 GDVEL--------------EDRAEELLGDLDPSKAIVDKIPLPPR-------KKQSATNM 349
G++EL D LL ++ + +++ + KK+ A +
Sbjct: 600 GNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSW 659
Query: 350 LEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEA-KEKAL 404
+E + +V + D E Y ++ L +MR GYVPDT +VLHD++ + KE L
Sbjct: 660 IEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDML 719
Query: 405 QYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 464
HSE++A+A+GL+ PP +RI KNLR CGDCHN + +S +V R++I+RD KRFHHF
Sbjct: 720 TTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHF 779
Query: 465 RDGKCSCGDYW 475
R+G+CSCG++W
Sbjct: 780 RNGECSCGNFW 790
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 41/268 (15%)
Query: 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKR 149
N +L + + + G +EA+E + + S+ D F+ S++ +C +++GK+
Sbjct: 248 NMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQ 307
Query: 150 VHE-LLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGY---- 204
VH +LR F +N L+ +Y KC AR +F+++ ++L SW+ ++SGY
Sbjct: 308 VHAYVLRREDF--SFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSG 365
Query: 205 ---------------------------AANGQGADGLMLFEQMRKTGPHPDKETFLVVFA 237
A NG G +GL LF M++ G P F
Sbjct: 366 HIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIK 425
Query: 238 ACASAEAVKEGFLYF-EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPT 296
+CA A G Y +++K G + A+I + G + EA + MP +
Sbjct: 426 SCAVLGAYCNGQQYHAQLLK--IGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDS 483
Query: 297 VEVWEALRNFAQIHG-DVELEDRAEELL 323
V W AL HG E D EE+L
Sbjct: 484 VS-WNALIAALGQHGHGAEAVDVYEEML 510
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 45/178 (25%)
Query: 165 LNNKLIEMYGKCCNT----RLARKVFDQLRKRNLSSWHLMISGYAANG---------QGA 211
++N L+ +Y KC ++ ARKVFD++ +++ SW M++GY NG +G
Sbjct: 186 VSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGM 245
Query: 212 D-----------------------GLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
D L + +M +G D+ T+ V ACA+A ++ G
Sbjct: 246 DDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG 305
Query: 249 --FLYFEIMKNDYGIVPGIEHYI-AIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
+ + + D+ H+ +++ + G EA E+MP + V W AL
Sbjct: 306 KQVHAYVLRREDFSF-----HFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVS-WNAL 357
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 33/131 (25%)
Query: 143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK----------- 191
S+++ + VH + T F + N+LI++Y K AR++FD++ +
Sbjct: 29 SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88
Query: 192 ----------------------RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK 229
R+ ++ MI+G++ N G + LF +M+ G PD
Sbjct: 89 GYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDN 148
Query: 230 ETFLVVFAACA 240
TF V A A
Sbjct: 149 FTFASVLAGLA 159
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 258 bits (660), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 209/370 (56%), Gaps = 28/370 (7%)
Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
S+L C L S++ G++VH L F DV + + L+ MY KC A+ VFD+ +
Sbjct: 336 SILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSK 395
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252
++ W+ +ISGYA++G G + L +F +M +G P+K T + + AC+ A ++EG F
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIF 455
Query: 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGD 312
E M++ + + P +EHY + +LG AG + +A E +E M +P VW AL + H
Sbjct: 456 ESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSR 515
Query: 313 VELEDRAEELLGDLDPSKA----IVDKIPLPPRKKQSATNMLEEK---NRVSDYRSTD-- 363
++L + A + L + +P A ++ I R K ++ + N VS +
Sbjct: 516 LDLAEVAAKKLFENEPDNAGTYVLLSSIN-ASRSKWGDVAVVRKNMRTNNVSKFPGCSWI 574
Query: 364 --------LYRGEYEK----------MKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
RG + ++ +G +REAGY PD +VLHD+DEE K +L
Sbjct: 575 EVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLS 634
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
HSERLA+AYGL+ P +P+R++KNLR+CGDCH AIK++SK+ RE+I+RD RFHHF
Sbjct: 635 RHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFN 694
Query: 466 DGKCSCGDYW 475
+G+CSC DYW
Sbjct: 695 NGECSCRDYW 704
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%)
Query: 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQ 219
+K V N +I +G+ AR+VFD + R+ ++W MI Y G + L LF Q
Sbjct: 262 MKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQ 321
Query: 220 MRKTGPHPDKETFLVVFAACASAEAVKEG 248
M+K G P + + + + CA+ +++ G
Sbjct: 322 MQKQGVRPSFPSLISILSVCATLASLQYG 350
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 84/200 (42%), Gaps = 53/200 (26%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRL--ARKVFD 187
+F L+D I+ +++++++ VKDV + +I G C R+ AR +FD
Sbjct: 147 MFGGLIDD----GRIDKARKLYDMMP----VKDVVASTNMIG--GLCREGRVDEARLIFD 196
Query: 188 QLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE 247
++R+RN+ +W MI+GY N + LFE M P+K
Sbjct: 197 EMRERNVVTWTTMITGYRQNNRVDVARKLFEVM------PEKTEV--------------- 235
Query: 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFA 307
+ +++ +G + +AEEF E MP +P + + F
Sbjct: 236 -------------------SWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFG 276
Query: 308 QIHGDVELEDRAEELLGDLD 327
++ G++ R +L+ D D
Sbjct: 277 EV-GEISKARRVFDLMEDRD 295
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 35/174 (20%)
Query: 182 ARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241
ARK FD L+ + + SW+ ++SGY +NG + LF++M + S
Sbjct: 36 ARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERN--------------VVS 81
Query: 242 AEAVKEGFLYFEIM---KNDYGIVP--GIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPT 296
+ G++ ++ +N + ++P + + A++K G + EAE RMP
Sbjct: 82 WNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNE 141
Query: 297 VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNML 350
V W + F + D G +D ++ + D +P+ + ++TNM+
Sbjct: 142 VS-WTVM--FGGLIDD-----------GRIDKARKLYDMMPV--KDVVASTNMI 179
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 167 NKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH 226
N L+ Y K AR VF+ + +RN+ SW M+ GY G + LF +M P
Sbjct: 83 NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM----PE 138
Query: 227 PDKETFLVVFAA 238
++ ++ V+F
Sbjct: 139 RNEVSWTVMFGG 150
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 258 bits (660), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 211/370 (57%), Gaps = 26/370 (7%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
FSS++ C N +E+G+++H L S+F + + L+ +Y KC A +VF+++
Sbjct: 220 FSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVP 279
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+NL W+ M+ YA + + LF++M+ +G P+ TFL V AC+ A V EG
Sbjct: 280 VKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRY 339
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
YF+ MK + I P +HY +++ +LG AG L EA E + MP +PT VW AL +H
Sbjct: 340 YFDQMK-ESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVH 398
Query: 311 GDVELEDRAEELLGDLDP-------------------SKAIVDKIPLPPR--KKQSATNM 349
+ EL A + + +L P A + L R KK++ +
Sbjct: 399 KNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSW 458
Query: 350 LEEKNRVSDY----RSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
+EE+N+V + R + + YEK+ L +M +AGY+ DT YVL ++D + K + ++
Sbjct: 459 VEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIR 518
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
YHSERLAIA+GLI+ P P+R++KNLR+CGDCHNAIK MS R +IVRDN RFH F
Sbjct: 519 YHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFE 578
Query: 466 DGKCSCGDYW 475
DGKCSC DYW
Sbjct: 579 DGKCSCNDYW 588
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 64/119 (53%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
V S SC L ++G+ VH L + + DV + + L++MY KC ARK+FD++
Sbjct: 118 VLPSATKSCAILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEM 177
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
+RN+ +W M+ GYA G+ + L LF++ + +F V + CA++ ++ G
Sbjct: 178 PQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELG 236
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 258 bits (658), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 206/371 (55%), Gaps = 26/371 (7%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
++ L +C L ++E GK +H L + D L LI+MY KC A +VF ++
Sbjct: 250 LANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIK 309
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
K+++ +W +ISGYA +G G + + F +M+K G P+ TF V AC+ V+EG L
Sbjct: 310 KKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKL 369
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
F M+ DY + P IEHY I+ +LG AG L EA+ F++ MP +P +W AL +IH
Sbjct: 370 IFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH 429
Query: 311 GDVELEDRAEELLGDLDP-------SKAIVDKIPLPPRKKQSATNMLEEK---------- 353
++EL + E+L +DP KA + + K +++E+
Sbjct: 430 KNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCST 489
Query: 354 ----NRVSDYRSTDLYRGEYEKMKG----LNGQMREAGYVPDTRYVLHD-IDEEAKEKAL 404
++ + D E EK++ + ++ E GYVP+ +L D +D++ +E +
Sbjct: 490 ISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIV 549
Query: 405 QYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 464
HSE+LAI YGLI T P +RI+KNLR+C DCH K++SKI R++++RD RFHHF
Sbjct: 550 HQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHF 609
Query: 465 RDGKCSCGDYW 475
RDGKCSCGDYW
Sbjct: 610 RDGKCSCGDYW 620
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 87/224 (38%), Gaps = 39/224 (17%)
Query: 122 ASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRL 181
+SA F SLL +C NL + E ++H + + DV N LI Y N +L
Sbjct: 109 SSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKL 168
Query: 182 ARKVFD-------------------------------QLRKRNLSSWHLMISGYAANGQG 210
A +FD ++ ++N SW MISGY
Sbjct: 169 AHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMN 228
Query: 211 ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL---YFEIMKNDYGIVPGIEH 267
+ L LF +M+ + PD + +ACA A+++G Y + V G
Sbjct: 229 KEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG--- 285
Query: 268 YIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
+I + G + EA E + + + +V+ W AL + HG
Sbjct: 286 -CVLIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALISGYAYHG 327
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 182 ARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241
A+ VFD + + W+LMI G++ + + L+L+++M + + TF + AC++
Sbjct: 68 AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127
Query: 242 AEAVKEGF-LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVW 300
A +E ++ +I K G + ++I G+ A +R+P EP W
Sbjct: 128 LSAFEETTQIHAQITK--LGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIP-EPDDVSW 184
Query: 301 EAL 303
++
Sbjct: 185 NSV 187
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 257 bits (657), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 210/376 (55%), Gaps = 26/376 (6%)
Query: 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKV 185
A F+++L + + S+ +GK++H + S +++V + L++MY KC + + A +V
Sbjct: 450 ADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQV 509
Query: 186 FDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAV 245
F+++ RN SW+ +IS +A NG G + F +M ++G PD + L V AC+ V
Sbjct: 510 FEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFV 569
Query: 246 KEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRN 305
++G YF+ M YGI P +HY ++ +LG G EAE+ ++ MPFEP +W ++ N
Sbjct: 570 EQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLN 629
Query: 306 FAQIHGDVELEDRAEELL----------------------GDLDPSKAIVDKIPLPPRKK 343
+IH + L +RA E L G+ + + + + KK
Sbjct: 630 ACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKK 689
Query: 344 QSATNMLEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEA 399
A + +E +++ + S D K+ L ++ GY PDT V+ D+DE+
Sbjct: 690 VPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQM 749
Query: 400 KEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNK 459
K ++L+YHSERLA+A+ LISTP P+ ++KNLR C DCH AIK++SKIV RE+ VRD
Sbjct: 750 KIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTS 809
Query: 460 RFHHFRDGKCSCGDYW 475
RFHHF +G CSCGDYW
Sbjct: 810 RFHHFSEGVCSCGDYW 825
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 93/187 (49%), Gaps = 8/187 (4%)
Query: 131 FSSLLDSCGNLKSIEMGKRVH--ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQ 188
F+++L NL S++MG+++H LL T+ + + + N L++MY KC A +F
Sbjct: 354 FATMLSIAANLSSLQMGRQLHCQALLATADSI--LHVGNSLVDMYAKCEMFEEAELIFKS 411
Query: 189 LRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
L +R SW +ISGY G GL LF +MR + D+ TF V A AS ++ G
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG 471
Query: 249 -FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFA 307
L+ I+++ G + + ++ + G + +A + E MP V W AL +
Sbjct: 472 KQLHAFIIRS--GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISAH 528
Query: 308 QIHGDVE 314
+GD E
Sbjct: 529 ADNGDGE 535
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 59/119 (49%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
FS +L + L +G+++H L T+ F +D + N++++ Y K R +FD++
Sbjct: 252 TFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEM 311
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
+ + S++++IS Y+ Q L F +M+ G F + + A+ +++ G
Sbjct: 312 PELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMG 370
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD--VELNNKLIEMYGKCCNTRLARKVFD 187
F++LL C + +VH F + + ++N L++ Y + LA +F+
Sbjct: 149 TFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFE 208
Query: 188 QLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAA 238
++ +++ +++ +I+GY +G + + LF +MR++G P TF V A
Sbjct: 209 EIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAAN 207
+RV + + F D +N ++E + ARKV+D++ +N S + MISG+
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92
Query: 208 GQGADGLMLFEQMRKTGPHPDKE--TFLVVFAACASAEAVKEGFLYFEIM 255
G + LF+ M PD+ T+ ++ A E F F M
Sbjct: 93 GDVSSARDLFDAM------PDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 212/373 (56%), Gaps = 27/373 (7%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
V SS++ +C NL + G++VH L+ F V ++N LI+MY KC + A+ +F ++
Sbjct: 240 VLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRM 299
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF 249
R R++ SW +I G A +GQ L L++ M G P++ TF+ + AC+ V++G
Sbjct: 300 RHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGR 359
Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
F+ M DYGI P ++HY ++ +LG +G L EAE + MPF P W AL + +
Sbjct: 360 ELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKR 419
Query: 310 HGDVELEDR-AEELLGDL---DPSKAIV-----DKIPLPPRKKQSATNMLEEKNR----- 355
G ++ R A+ L+ DPS I+ L + ++ + E + R
Sbjct: 420 QGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGH 479
Query: 356 --VSDYRSTDL-YRGE---------YEKMKGLNGQMR-EAGYVPDTRYVLHDIDEEAKEK 402
V + T++ Y GE + +K L +MR GYVPDT ++LHD+DE+ KEK
Sbjct: 480 SSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEK 539
Query: 403 ALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFH 462
L +HSER A+AYGL+ P P+RI+KNLR+CGDCH +K +S+I RE+IVRD R+H
Sbjct: 540 LLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYH 599
Query: 463 HFRDGKCSCGDYW 475
HF+ GKCSC D+W
Sbjct: 600 HFKGGKCSCNDFW 612
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
VFS+L+ +C NL SI+ G++VH S + D + + L++MY KC A+ VFD +
Sbjct: 107 VFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSI 166
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLF 217
R +N SW M+SGYA +G+ + L LF
Sbjct: 167 RVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 135 LDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNL 194
L C +++ K +H + V+ L N L+ +YGKC A +VFD++ R+
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 195 SSWHLMISGY-AANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
+W +++ AN G + +G PD F + ACA+ ++ G
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHG 124
>sp|Q8S8Q7|PP183_ARATH Pentatricopeptide repeat-containing protein At2g34370,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2
SV=1
Length = 469
Score = 256 bits (654), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/477 (35%), Positives = 256/477 (53%), Gaps = 51/477 (10%)
Query: 18 SSNFNSKI-SHSISAHSVTLKSSSPVKLLCAYATPNPKVYRNTRFVKKQRNPSSNEQEPK 76
S FNS+ SH++ ++T SS +L +++N FV+ +R S
Sbjct: 25 SRCFNSRAQSHNLITKTIT---SSLQDVL------TRPIWQNRSFVQCRRVSS------- 68
Query: 77 TGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLL 135
++Q N+ + +E+ D +LCK+ K+REA+E + D GY V F LL
Sbjct: 69 ----YAQMVNN--HQSVTIETFD----ALCKQVKIREALEVI--DILEDKGYIVDFPRLL 116
Query: 136 ---DSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
CG ++++E + VH+ + D + +IEMY C +T A VF+++ KR
Sbjct: 117 GLAKLCGEVEALEEARVVHDCITPL----DARSYHTVIEMYSGCRSTDDALNVFNEMPKR 172
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252
N +W MI A NG+G + +F + + G PDKE F VF AC S + EG L+F
Sbjct: 173 NSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDINEGLLHF 232
Query: 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGD 312
E M DYG+V +E Y+ +I++L + GHL EA +FVERM EP+VE+WE L N + G
Sbjct: 233 ESMYRDYGMVLSMEDYVNVIEMLAACGHLDEALDFVERMTVEPSVEMWETLMNLCWVQGY 292
Query: 313 VELEDRAEELLGDLDPSKAIVDKIP--LPPRKKQSATNMLEE-----------KNRVSDY 359
+EL DR EL+ LD S+ + + + SA L+E K R+ ++
Sbjct: 293 LELGDRFAELIKKLDASRMSKESNAGLVAAKASDSAMEKLKELRYCQMIRDDPKKRMHEF 352
Query: 360 RSTDL-YRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLI 418
R+ D + G + L QM + G+VP TR ++EE KE+ L + S +LA A+ +I
Sbjct: 353 RAGDTSHLGTVSAFRSLKVQMLDIGFVPATRVCFVTVEEEEKEEQLLFRSNKLAFAHAII 412
Query: 419 STPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
++ R PL +++N+R C D HN K++S I GR LI RD K++H +++G CSC DYW
Sbjct: 413 NSEARRPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKNGVCSCKDYW 469
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 255 bits (651), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 209/379 (55%), Gaps = 38/379 (10%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
+S+L +CG+ ++ +GK++H + + ++ L N LI+MY KC AR VF+ ++
Sbjct: 312 ITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMK 371
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
R++ SW MIS Y +G+G D + LF +++ +G PD F+ AAC+ A ++EG
Sbjct: 372 SRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRS 431
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
F++M + Y I P +EH ++ +LG AG + EA F++ M EP VW AL ++H
Sbjct: 432 CFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVH 491
Query: 311 GDVELEDRAEELLGDLDPSKA----IVDKIPLPPRKKQSATNMLE--------------- 351
D ++ A + L L P ++ ++ I + + TN+
Sbjct: 492 SDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASN 551
Query: 352 -EKNRV---------SDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKE 401
E NR+ S +S ++YR ++ L +M+E GYVPD+ LHD++EE KE
Sbjct: 552 VEVNRIIHTFLVGDRSHPQSDEIYR----ELDVLVKKMKELGYVPDSESALHDVEEEDKE 607
Query: 402 KALQYHSERLAIAYGLISTP-----PRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVR 456
L HSE+LAI + L++T +RI KNLRICGDCH A K++S+I RE+I+R
Sbjct: 608 THLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIR 667
Query: 457 DNKRFHHFRDGKCSCGDYW 475
D RFH FR G CSCGDYW
Sbjct: 668 DTNRFHVFRFGVCSCGDYW 686
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 28/311 (9%)
Query: 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYD--VFSSLLDSCGNLKSIEMGKRVHELLR 155
++V + S G E ++ G + D F +L +C +I +G+++H
Sbjct: 108 INVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSAT 167
Query: 156 TSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLM 215
+ + N L+ MYGKC AR V D++ +R++ SW+ ++ GYA N + D L
Sbjct: 168 KVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALE 227
Query: 216 LFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVL 275
+ +M D T + A ++ E +Y + M G + + +I V
Sbjct: 228 VCREMESVKISHDAGTMASLLPAVSNTTT--ENVMYVKDMFFKMG-KKSLVSWNVMIGVY 284
Query: 276 GSAGHLIEAEEFVERMP---FEP-TVEV---------WEALRNFAQIHGDVELEDRAEEL 322
+EA E RM FEP V + AL +IHG +E ++L
Sbjct: 285 MKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE----RKKL 340
Query: 323 LGDLDPSKAIVD---KIPLPPRKKQSATNMLEEKNRVSDYRSTDLY--RGEYEKMKGLNG 377
+ +L A++D K + + NM + ++ VS Y G L
Sbjct: 341 IPNLLLENALIDMYAKCGCLEKARDVFENM-KSRDVVSWTAMISAYGFSGRGCDAVALFS 399
Query: 378 QMREAGYVPDT 388
+++++G VPD+
Sbjct: 400 KLQDSGLVPDS 410
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 5/174 (2%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
+ +LD+ +++++ + VH + + L KL+ Y + ARKVFD++
Sbjct: 44 LLGQVLDTYPDIRTL---RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEI 100
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF 249
+RN+ ++MI Y NG +G+ +F M PD TF V AC+ + + G
Sbjct: 101 PERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIG- 159
Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
G+ + ++ + G G L EA ++ M V W +L
Sbjct: 160 RKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVS-WNSL 212
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 88/231 (38%), Gaps = 13/231 (5%)
Query: 178 NTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFA 237
N + +F ++ K++L SW++MI Y N + + L+ +M G PD + V
Sbjct: 258 NVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLP 317
Query: 238 ACASAEAVKEG---FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFE 294
AC A+ G Y E K ++P + A+I + G L +A + E M
Sbjct: 318 ACGDTSALSLGKKIHGYIERKK----LIPNLLLENALIDMYAKCGCLEKARDVFENMKSR 373
Query: 295 PTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKN 354
V W A+ + G A L L S + D I + L E+
Sbjct: 374 DVVS-WTAMISAYGFSGR---GCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEG 429
Query: 355 RVSDYRSTDLYR--GEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKA 403
R TD Y+ E + + + AG V + + D+ E E+
Sbjct: 430 RSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERV 480
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 206/369 (55%), Gaps = 25/369 (6%)
Query: 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK 191
+ +L +C +L + + G+ +H + + + D + N L++MY KC LA +FD +
Sbjct: 503 ACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIAS 562
Query: 192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251
++L SW +MI+GY +G G + + LF QMR+ G D+ +F+ + AC+ + V EG+ +
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622
Query: 252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
F IM+++ I P +EHY I+ +L G LI+A F+E MP P +W AL +IH
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHH 682
Query: 312 DVELEDRAEELLGDLDPS---------------------KAIVDKIPLPPRKKQSATNML 350
DV+L ++ E + +L+P K + +I +K + +
Sbjct: 683 DVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWI 742
Query: 351 EEKNRVSDYRSTDLYRGEYEK----MKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQY 406
E K RV+ + + D E E ++ + +M E GY P T+Y L D +E KE+AL
Sbjct: 743 EIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCG 802
Query: 407 HSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRD 466
HSE+LA+A G+IS+ +R+ KNLR+CGDCH K MSK+ RE+++RD+ RFH F+D
Sbjct: 803 HSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKD 862
Query: 467 GKCSCGDYW 475
G CSC +W
Sbjct: 863 GHCSCRGFW 871
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 4/157 (2%)
Query: 107 KEGKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE 164
+EG EA++ + DV++ ++L+ C + ++ GKRVHE ++ + D+
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIF 433
Query: 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
++N L++MY KC + + A VF ++R +++ SW+ +I GY+ N + L LF + +
Sbjct: 434 VSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEK 493
Query: 225 PH-PDKETFLVVFAACASAEAVKEGF-LYFEIMKNDY 259
PD+ T V ACAS A +G ++ IM+N Y
Sbjct: 494 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY 530
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 4/172 (2%)
Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
S+ C + + I +G+ VH + + F ++ N L++MY KC + A+ VF ++ R
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 360
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252
++ S+ MI+GYA G + + LFE+M + G PD T V CA + EG
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH 420
Query: 253 EIMK-NDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
E +K ND G + + A++ + G + EAE M + + W +
Sbjct: 421 EWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVKDIIS-WNTI 469
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Query: 105 LCKEGKVREAIEYMGQDASASAGYD--VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD 162
L K G +I + S+ D FS + S +L+S+ G+++H + S F +
Sbjct: 170 LAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGER 229
Query: 163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222
+ N L+ Y K ARKVFD++ +R++ SW+ +I+GY +NG GL +F QM
Sbjct: 230 NSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLV 289
Query: 223 TGPHPDKETFLVVFAACASAEAVKEG 248
+G D T + VFA CA + + G
Sbjct: 290 SGIEIDLATIVSVFAGCADSRLISLG 315
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 99 DVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSA 158
+ L C+ G + A++ + S+L C + KS++ GK V +R +
Sbjct: 65 NTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNG 124
Query: 159 FVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFE 218
FV D L +KL MY C + + A +VFD+++ W+++++ A +G + + LF+
Sbjct: 125 FVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFK 184
Query: 219 QMRKTGPHPDKETFLVVFAACASAEAVKEG-FLYFEIMKNDYG 260
+M +G D TF V + +S +V G L+ I+K+ +G
Sbjct: 185 KMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFG 227
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 217/398 (54%), Gaps = 29/398 (7%)
Query: 107 KEGKVREAI----EYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD 162
K GK EA+ E M + +S S+L +C +L ++E GK +H +
Sbjct: 260 KNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSI 319
Query: 163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222
+ + + L+ MYG+C + ++VFD++ R++ SW+ +IS Y +G G + +FE+M
Sbjct: 320 LPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLA 379
Query: 223 TGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLI 282
G P TF+ V AC+ V+EG FE M D+GI P IEHY ++ +LG A L
Sbjct: 380 NGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLD 439
Query: 283 EAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA----------- 331
EA + V+ M EP +VW +L +IHG+VEL +RA L L+P A
Sbjct: 440 EAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYA 499
Query: 332 ---IVDKIPLPPR-------KKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKG----LNG 377
+ D++ + +K +E + ++ + S D + E++ L
Sbjct: 500 EAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAE 559
Query: 378 QMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGD 437
M+E GY+P T+ VL++++ E KE+ + HSE+LA+A+GLI+T P+RI KNLR+C D
Sbjct: 560 DMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCED 619
Query: 438 CHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
CH K +SK + +E++VRD RFH F++G CSCGDYW
Sbjct: 620 CHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 104 SLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDV 163
SLCKEGK+++AI + Q++S S + L+ CG+ S+ RVH + + +D
Sbjct: 55 SLCKEGKLKQAIRVLSQESSPSQ--QTYELLILCCGHRSSLSDALRVHRHILDNGSDQDP 112
Query: 164 ELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKT 223
L KLI MY + ARKVFD+ RKR + W+ + G G + L L+ +M +
Sbjct: 113 FLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRI 172
Query: 224 GPHPDKETFLVVFAACASAEA 244
G D+ T+ V AC ++E
Sbjct: 173 GVESDRFTYTYVLKACVASEC 193
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 8/169 (4%)
Query: 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAA 206
GK +H L + V + L++MY + A VF + RN+ SW MI+ YA
Sbjct: 201 GKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAK 260
Query: 207 NGQGADGLMLF-EQMRKT-GPHPDKETFLVVFAACASAEAVKEGFLY--FEIMKNDYGIV 262
NG+ + L F E MR+T P+ T + V ACAS A+++G L + + + I+
Sbjct: 261 NGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSIL 320
Query: 263 PGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
P I A++ + G G L + +RM + V W +L + +HG
Sbjct: 321 PVIS---ALVTMYGRCGKLEVGQRVFDRM-HDRDVVSWNSLISSYGVHG 365
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 253 bits (645), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 215/374 (57%), Gaps = 32/374 (8%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
FSS L +C +L S+++G +VH L + K V ++N LI+MY KC + + A+ VF+++
Sbjct: 452 FSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEME 511
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+++SW+ +ISGY+ +G G L + + M+ P+ TFL V + C++A + +G
Sbjct: 512 TIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQE 571
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
FE M D+GI P +EHY ++++LG +G L +A + +E +P+EP+V +W A+ + +
Sbjct: 572 CFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQ 631
Query: 311 GDVELEDRAEELLGDLDP----SKAIVDKIPLPPR-----------------KKQSATNM 349
+ E R+ E + ++P + +V + + KK+ +
Sbjct: 632 NNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSW 691
Query: 350 LEEKNRV-------SDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEK 402
+E + V SD+ L G E LN + AGYVPD VL D+D+E K+K
Sbjct: 692 IEHQGDVHYFSVGLSDHPDMKLINGMLE---WLNMKATRAGYVPDRNAVLLDMDDEEKDK 748
Query: 403 ALQYHSERLAIAYGLISTP-PRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRF 461
L HSERLA+AYGL+ P R + I+KNLRIC DCH+A+K++S IV R+L++RD RF
Sbjct: 749 RLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRF 808
Query: 462 HHFRDGKCSCGDYW 475
HHF G CSCGD+W
Sbjct: 809 HHFHAGVCSCGDHW 822
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Query: 105 LCKEGKVREAIEYM--GQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD 162
C+ G EA++ ++A SS+L+ C K +G+++H L+ F D
Sbjct: 323 FCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLD 382
Query: 163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222
+ ++N LI++Y KC A K+F +L +N SW+ +I GY G+G +F + +
Sbjct: 383 IYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALR 442
Query: 223 TGPHPDKETFLVVFAACASAEAVKEG 248
+ TF ACAS ++ G
Sbjct: 443 NQVSVTEVTFSSALGACASLASMDLG 468
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F + L + L + + K VH + + +V D + L+++Y + + A KVF+++
Sbjct: 250 FDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMP 309
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA 240
K ++ W MI+ + NG + + LF +MR+ P++ T + CA
Sbjct: 310 KNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCA 359
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 3/180 (1%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
VF+S L +L E+ +H + + + + LI Y C + AR VF+ +
Sbjct: 148 VFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGI 207
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG- 248
+++ W ++S Y NG D L L MR G P+ TF A A
Sbjct: 208 LCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAK 267
Query: 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQ 308
++ +I+K Y + P + + ++++ G + +A + MP V + F Q
Sbjct: 268 GVHGQILKTCYVLDPRVG--VGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQ 325
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 252 bits (644), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 136/399 (34%), Positives = 219/399 (54%), Gaps = 30/399 (7%)
Query: 107 KEGKVREAIEYMGQ----DASASAGYDVFSSLLDSCGNLKSIEMGKRVHEL-LRTSAFVK 161
+ G +A+E + + D S L +C +L ++ +GK++H LR
Sbjct: 452 QHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAV 511
Query: 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMR 221
+ ++N LI+MY KC + AR VFD + +N +W +++GY +G G + L +F++MR
Sbjct: 512 PLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMR 571
Query: 222 KTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHL 281
+ G D T LVV AC+ + + +G YF MK +G+ PG EHY ++ +LG AG L
Sbjct: 572 RIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRL 631
Query: 282 IEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDL----DPSKAIVDKIP 337
A +E MP EP VW A + +IHG VEL + A E + +L D S ++ +
Sbjct: 632 NAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLY 691
Query: 338 LPPRKKQSAT---NMLEEK--------NRVSDYR-STDLYRGE---------YEKMKGLN 376
+ + T +++ K + V + +T + G+ Y+ +
Sbjct: 692 ANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHM 751
Query: 377 GQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICG 436
++++ GYVP+T + LHD+D+E K+ L HSE+LA+AYG+++TP +RI KNLR+CG
Sbjct: 752 QRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCG 811
Query: 437 DCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
DCH A MS+I+ ++I+RD+ RFHHF++G CSC YW
Sbjct: 812 DCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F + +CG + S+ G+ H L + F+ +V + N L+ MY +C + ARKVFD++
Sbjct: 130 FPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMS 189
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQM-RKTGPHPDKETFLVVFAACAS 241
++ SW+ +I YA G+ L +F +M + G PD T + V CAS
Sbjct: 190 VWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCAS 241
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
++L C +L + +GK++H TS ++++ + N L++MY KC A VF + +
Sbjct: 234 NVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVK 293
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252
++ SW+ M++GY+ G+ D + LFE+M++ D T+ + A E
Sbjct: 294 DVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVC 353
Query: 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEE 286
M + GI P I+++ S G L+ +E
Sbjct: 354 RQMLSS-GIKPNEVTLISVLSGCASVGALMHGKE 386
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 20/216 (9%)
Query: 133 SLLDSCGNLKSIEMGKRVHEL-------LRTSAFVKDVELNNKLIEMYGKCCNTRLARKV 185
S+L C ++ ++ GK +H LR + + + N+LI+MY KC AR +
Sbjct: 370 SVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAM 429
Query: 186 FDQL--RKRNLSSWHLMISGYAANGQGADGLMLFEQM--RKTGPHPDKETFLVVFAACAS 241
FD L ++R++ +W +MI GY+ +G L L +M P+ T ACAS
Sbjct: 430 FDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACAS 489
Query: 242 AEAVKEG-FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVW 300
A++ G ++ ++N VP +I + G + +A + M + V W
Sbjct: 490 LAALRIGKQIHAYALRNQQNAVPLFVSN-CLIDMYAKCGSISDARLVFDNMMAKNEV-TW 547
Query: 301 EALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKI 336
+L +HG EE LG D + I K+
Sbjct: 548 TSLMTGYGMHG------YGEEALGIFDEMRRIGFKL 577
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 197 WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
W+ +I Y NG L LF M PD TF VF AC +V+ G
Sbjct: 95 WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCG 146
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 205/372 (55%), Gaps = 27/372 (7%)
Query: 131 FSSLLDSCGNLK-SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
FSS+L+ C S+ GK+ H S + +++ L+ MY K N A +VF +
Sbjct: 497 FSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQ 556
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF 249
R+++L SW+ MISGYA +GQ L +F++M+K D TF+ VFAAC A V+EG
Sbjct: 557 REKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGE 616
Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
YF+IM D I P EH ++ + AG L +A + +E MP +W + ++
Sbjct: 617 KYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRV 676
Query: 310 HGDVEL-------------EDRAEELL--------GDLDPSKAIVDKIPLPPRKKQSATN 348
H EL ED A +L GD + + KK+ +
Sbjct: 677 HKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYS 736
Query: 349 MLEEKNRVSDY----RSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKAL 404
+E KN+ + RS L Y K++ L+ ++++ GY PDT YVL DID+E KE L
Sbjct: 737 WIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVL 796
Query: 405 QYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 464
HSERLAIA+GLI+TP PL IIKNLR+CGDCH IK+++KI RE++VRD+ RFHHF
Sbjct: 797 AQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHF 856
Query: 465 -RDGKCSCGDYW 475
DG CSCGD+W
Sbjct: 857 SSDGVCSCGDFW 868
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 10/145 (6%)
Query: 102 LLSLCKEGKVREA------IEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLR 155
L ++G+ +EA I +G + S +FSS+L L G+++H
Sbjct: 65 LFGFSRDGRTQEAKRLFLNIHRLGMEMDCS----IFSSVLKVSATLCDELFGRQLHCQCI 120
Query: 156 TSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLM 215
F+ DV + L++ Y K N + RKVFD++++RN+ +W +ISGYA N + L
Sbjct: 121 KFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLT 180
Query: 216 LFEQMRKTGPHPDKETFLVVFAACA 240
LF +M+ G P+ TF A
Sbjct: 181 LFMRMQNEGTQPNSFTFAAALGVLA 205
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAA 206
G +VH ++ + K + ++N LI +Y KC N R AR +FD+ +++ +W+ MISGYAA
Sbjct: 213 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 272
Query: 207 NGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS-----------AEAVKEGFLYFEIM 255
NG + L +F MR + +F V CA+ VK GFL+ + +
Sbjct: 273 NGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332
Query: 256 KN----DYGIVPGIEHYIAIIKVLGSAGHLI 282
+ Y + + + K +G G+++
Sbjct: 333 RTALMVAYSKCTAMLDALRLFKEIGCVGNVV 363
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F+S++ C NLK + +++H + F+ D + L+ Y KC A ++F ++
Sbjct: 298 FASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIG 357
Query: 191 -KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAA 238
N+ SW MISG+ N + + LF +M++ G P++ T+ V+ A
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%)
Query: 150 VHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQ 209
VH + + + + + L++ Y K A KVF + +++ +W M++GYA G+
Sbjct: 415 VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 474
Query: 210 GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244
+ +F ++ K G P++ TF + CA+ A
Sbjct: 475 TEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA 509
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 142/413 (34%), Positives = 221/413 (53%), Gaps = 31/413 (7%)
Query: 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVH 151
L S + L C+ +A + + + G F+ SLL N+ SI G+++H
Sbjct: 438 NLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIH 497
Query: 152 ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGA 211
+ + + N LI MY KC + A +VF+ + RN+ SW MI+G+A +G
Sbjct: 498 SQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAI 557
Query: 212 DGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAI 271
L F QM + G P++ T++ + +AC+ V EG+ +F M D+ I P +EHY +
Sbjct: 558 RVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACM 617
Query: 272 IKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331
+ +L AG L +A EF+ MPF+ V VW ++H + EL A + +LDP++
Sbjct: 618 VDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEP 677
Query: 332 I----VDKIPLPPRKKQSATNM---LEEKNRVSDYRST---------DLYRGE------- 368
+ I K + +T M ++E+N V + + Y G+
Sbjct: 678 AAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAH 737
Query: 369 --YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKE----KALQYHSERLAIAYGLISTPP 422
Y+++ L +++ GYVPDT VLH ++EE E + L HSE++A+A+GLIST
Sbjct: 738 QIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSK 797
Query: 423 RMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
P+R+ KNLR+CGDCHNA+K +S + GRE+++RD RFHHF+DGKCSC DYW
Sbjct: 798 SRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 114 AIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173
A++ M +D FSSLL SC + +GK VH L D L N LI +Y
Sbjct: 48 ALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLY 107
Query: 174 GKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE 230
K ++ A VF+ +R KR++ SW M++ Y NG+ D + +F + + G P+
Sbjct: 108 SKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDY 167
Query: 231 TFLVVFAACASAEAVKEG 248
+ V AC++++ V G
Sbjct: 168 CYTAVIRACSNSDFVGVG 185
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Query: 102 LLSLCKE-GKVREAIEYMGQDASASAGYDVF--SSLLDSCGNLKSIEMGKRVHELLRTSA 158
+++ C + G REAI + + D F SS+ +C L+++ +GK++H S
Sbjct: 240 MITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG 299
Query: 159 FVKDVELNNKLIEMYGKCC---NTRLARKVFDQLRKRNLSSWHLMISGYAANGQGA-DGL 214
V DVE + L++MY KC + RKVFD++ ++ SW +I+GY N A + +
Sbjct: 300 LVDDVECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAI 357
Query: 215 MLFEQMRKTG-PHPDKETFLVVFAACAS 241
LF +M G P+ TF F AC +
Sbjct: 358 NLFSEMITQGHVEPNHFTFSSAFKACGN 385
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 91/177 (51%), Gaps = 7/177 (3%)
Query: 131 FSSLLDSCGNLKSIEMGK-RVHELLRTSAFVKDVELNNKLIEMYGKCCNT-RLARKVFDQ 188
+++++ +C N + +G+ + L++T F DV + LI+M+ K N+ A KVFD+
Sbjct: 169 YTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDK 228
Query: 189 LRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
+ + N+ +W LMI+ G + + F M +G DK T VF+ACA E + G
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288
Query: 249 -FLYFEIMKNDYGIVPGIEHYIAIIKVLGSA-GHLIEAEEFVERMPFEPTVEVWEAL 303
L+ +++ G+V +E + + SA G + + + +RM + +V W AL
Sbjct: 289 KQLHSWAIRS--GLVDDVECSLVDMYAKCSADGSVDDCRKVFDRME-DHSVMSWTAL 342
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
FSS +CGNL +GK+V + + N +I M+ K A++ F+ L
Sbjct: 376 FSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLS 435
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
++NL S++ + G N L ++ + TF + + A+ ++++G
Sbjct: 436 EKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKG 493
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 143/410 (34%), Positives = 226/410 (55%), Gaps = 36/410 (8%)
Query: 100 VNLLSLCKEGKVREAIEYMGQ-------DASASAGYDVFSSLLDSCGNLKSIEMGKRVHE 152
+N +C GK +EA++ + +A S++L +CG L ++E GK VH
Sbjct: 166 INGYVMC--GKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHA 223
Query: 153 LLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL-RKRNLSSWHLMISGYAANGQGA 211
+ D+ L LI+MY KC + A++VF+ L K+++ ++ MI A G
Sbjct: 224 YIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTD 283
Query: 212 DGLMLFEQMRKT-GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIA 270
+ LF +M + +P+ TF+ + AC + EG YF++M ++GI P I+HY
Sbjct: 284 ECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGC 343
Query: 271 IIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP-- 328
++ + G +G + EAE F+ MP EP V +W +L + +++ GD++ + A + L +LDP
Sbjct: 344 MVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMN 403
Query: 329 -------------------SKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEY 369
K I ++ + K + +E + V ++ D + E
Sbjct: 404 SGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQES 463
Query: 370 EKMKGLNGQ----MREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMP 425
E++ + + +REAGYV DT+ VL D++E+ KE AL YHSE+LAIA+ L+ T P P
Sbjct: 464 ERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTP 523
Query: 426 LRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
+RIIKNLRICGDCH +K++SK+ RE++VRD RFHHFRDG CSC D+W
Sbjct: 524 VRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDFW 573
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 98/245 (40%), Gaps = 40/245 (16%)
Query: 124 ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRL-- 181
S + F LL S N + +G+R H + KD + L+ MY C + R
Sbjct: 58 VSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQ 117
Query: 182 -----------------------------ARKVFDQLRKRNLSSWHLMISGYAANGQGAD 212
ARK+FD++ +RN+ SW +I+GY G+ +
Sbjct: 118 RVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKE 177
Query: 213 GLMLFEQMRKTGPH-----PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEH 267
L LF +M+ P+ P++ T V +AC A+++G + + Y + I
Sbjct: 178 ALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQG-KWVHAYIDKYHVEIDIVL 236
Query: 268 YIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD 327
A+I + G L A+ + + V+ + A+ ++G L D +L ++
Sbjct: 237 GTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYG---LTDECFQLFSEMT 293
Query: 328 PSKAI 332
S I
Sbjct: 294 TSDNI 298
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 248 bits (632), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 138/413 (33%), Positives = 219/413 (53%), Gaps = 42/413 (10%)
Query: 90 RGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKR 149
R +LE+LD+ +L Q + S+L C +L S+ GK+
Sbjct: 308 RNGFELEALDLFILM---------------QKQGVRPTFPTLISILSVCASLASLHHGKQ 352
Query: 150 VHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQ 209
VH L F DV + + L+ MY KC ++ +FD+ +++ W+ +ISGYA++G
Sbjct: 353 VHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGL 412
Query: 210 GADGLMLFEQMRKTG-PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHY 268
G + L +F +M +G P++ TF+ +AC+ A V+EG +E M++ +G+ P HY
Sbjct: 413 GEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHY 472
Query: 269 IAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP 328
++ +LG AG EA E ++ M EP VW +L + H +++ + + L +++P
Sbjct: 473 ACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEP 532
Query: 329 SKA---------------IVDKIPLPPR------KKQSATNMLEEKNRVSDYRSTDLYRG 367
+ D L +K + E +N+V + +
Sbjct: 533 ENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSH 592
Query: 368 EYEK-----MKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPP 422
++ + L+G +REAGY PD Y LHD+DEE K +L+YHSERLA+AY L+
Sbjct: 593 PEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSE 652
Query: 423 RMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDYW 475
+P+R++KNLR+C DCH AIKI+SK+ RE+I+RD RFHHFR+G+CSC DYW
Sbjct: 653 GIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 107/237 (45%), Gaps = 37/237 (15%)
Query: 105 LCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELL-------RTS 157
LCKEG+V EA E D + +++++ G ++ +++ +++ TS
Sbjct: 182 LCKEGRVDEAREIF--DEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTS 239
Query: 158 AF--------------------VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSW 197
VK V N +I G+ AR+VFD +++RN +SW
Sbjct: 240 MLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASW 299
Query: 198 HLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-FLYFEIMK 256
+I + NG + L LF M+K G P T + + + CAS ++ G ++ ++++
Sbjct: 300 QTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVR 359
Query: 257 NDYGIVPGIEHYIA--IIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
+ ++ Y+A ++ + G L++++ +R P + + +W ++ + HG
Sbjct: 360 CQF----DVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDII-MWNSIISGYASHG 411
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 167 NKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH 226
N L+ Y K ARKVFD + +RN+ SW ++ GY NG+ LF +M P
Sbjct: 83 NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM----PE 138
Query: 227 PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEE 286
+K ++ V+ + + +E++ + I ++I L G + EA E
Sbjct: 139 KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIA-----RTSMIHGLCKEGRVDEARE 193
Query: 287 FVERMPFEPTVEVWEAL 303
+ M E +V W +
Sbjct: 194 IFDEMS-ERSVITWTTM 209
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 149 RVHEL--LRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAA 206
++HE L S K + N ++ Y R ARK+FD++ RN+ SW+ ++SGY
Sbjct: 32 KIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMK 91
Query: 207 NGQGADGLMLFEQM 220
NG+ + +F+ M
Sbjct: 92 NGEIDEARKVFDLM 105
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 172 MYGKCCNTRL--ARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK 229
++G C R+ AR++FD++ +R++ +W M++GY N + D +F+ M P +
Sbjct: 179 IHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVM----PEKTE 234
Query: 230 ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVE 289
++ + +++ FE+M V + A+I LG G + +A +
Sbjct: 235 VSWTSMLMGYVQNGRIEDAEELFEVMP-----VKPVIACNAMISGLGQKGEIAKARRVFD 289
Query: 290 RM 291
M
Sbjct: 290 SM 291
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 245 bits (626), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 208/376 (55%), Gaps = 31/376 (8%)
Query: 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD 187
Y S+L + L S+E+G+ +H S D L + LI+MY KC A VF+
Sbjct: 274 YVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFE 333
Query: 188 QLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE 247
+L + N+ +W MI+G+A +GQ D + F +MR+ G P ++ + AC+ V+E
Sbjct: 334 RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEE 393
Query: 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFA 307
G YF M + G+ P IEHY ++ +LG +G L EAEEF+ MP +P +W+AL
Sbjct: 394 GRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGAC 453
Query: 308 QIHGDVELEDRAEELLGDLDP--SKAIVD-------------------KIPLPPRKKQSA 346
++ G+VE+ R +L D+ P S A V ++ +K
Sbjct: 454 RMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPG 513
Query: 347 TNMLEEKNRVSDYRSTDLYRGEYEKMKGLNG-------QMREAGYVPDTRYVLHDIDEEA 399
++++ + ++ D + K K +N ++R AGY P T VL +++EE
Sbjct: 514 CSLIDIDGVLHEFVVED---DSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEED 570
Query: 400 KEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNK 459
KE L YHSE++A A+GLIST P P+RI+KNLRIC DCH++IK++SK+ R++ VRD K
Sbjct: 571 KENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRK 630
Query: 460 RFHHFRDGKCSCGDYW 475
RFHHF+DG CSC DYW
Sbjct: 631 RFHHFQDGSCSCMDYW 646
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMR 221
++ L N +I+ Y + + + AR +FD++R+R++ SW+ MISGY+ NG D + +F +M+
Sbjct: 207 EIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK 266
Query: 222 KTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHL 281
K P+ T + V A + +++ G + + D GI A+I + G +
Sbjct: 267 KGDIRPNYVTLVSVLPAISRLGSLELG-EWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 325
Query: 282 IEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
+A ER+P E + W A+ N IHG
Sbjct: 326 EKAIHVFERLPRENVI-TWSAMINGFAIHG 354
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI--EMYGKCCNTRL-------ARK 184
L N ++I ++H + F+K ++ + L E+ C + L A K
Sbjct: 26 LFPQINNCRTIRDLSQIH-----AVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHK 80
Query: 185 VFDQLRKRNLSSWHLMISGYAANGQGADGL---MLFEQMRKTGPHPDKETFLVVFAACAS 241
+F+Q+ +RN SW+ +I G++ + + + + +E M P++ TF V ACA
Sbjct: 81 IFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAK 140
Query: 242 AEAVKEG 248
++EG
Sbjct: 141 TGKIQEG 147
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 245 bits (626), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 129/369 (34%), Positives = 207/369 (56%), Gaps = 26/369 (7%)
Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
S L +C + ++E+G+ +H ++ + + + LI MY KC + +R+VF+ + KR
Sbjct: 370 STLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR 429
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252
++ W MI G A +G G + + +F +M++ P+ TF VF AC+ V E F
Sbjct: 430 DVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 489
Query: 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGD 312
M+++YGIVP +HY I+ VLG +G+L +A +F+E MP P+ VW AL +IH +
Sbjct: 490 HQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 549
Query: 313 VELEDRAEELLGDLDP----SKAIVDKI-----------------PLPPRKKQSATNMLE 351
+ L + A L +L+P + ++ I + KK+ + +E
Sbjct: 550 LNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIE 609
Query: 352 EKNRVSDYRSTD----LYRGEYEKMKGLNGQMREAGYVPDTRYVLHDI-DEEAKEKALQY 406
+ ++ S D + Y K+ + +++ GY P+ VL I +EE KE++L
Sbjct: 610 IDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNL 669
Query: 407 HSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRD 466
HSE+LAI YGLIST +R+IKNLR+CGDCH+ K++S++ RE+IVRD RFHHFR+
Sbjct: 670 HSEKLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRN 729
Query: 467 GKCSCGDYW 475
G+CSC D+W
Sbjct: 730 GQCSCNDFW 738
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
F L+ + + S+ +G+ +H + SA DV + N LI Y C + A KVF +
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
+++++ SW+ MI+G+ G L LF++M T + V +ACA ++ G
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFG 251
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKV 185
A + +L +C ++++E G++V + + ++ L N +++MY KC + A+++
Sbjct: 230 ASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRL 289
Query: 186 FDQLRKRNLSSWHLMISGYA-------------------------------ANGQGADGL 214
FD + +++ +W M+ GYA NG+ + L
Sbjct: 290 FDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEAL 349
Query: 215 MLFEQMR-KTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK 273
++F +++ + ++ T + +ACA A++ G +K +GI A+I
Sbjct: 350 IVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKK-HGIRMNFHVTSALIH 408
Query: 274 VLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHG 311
+ G L ++ E + + V VW A+ +HG
Sbjct: 409 MYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG 445
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 8/120 (6%)
Query: 133 SLLDSCGNLKSIEMGKRVH-ELLRTSAFVKDVELNNKLIEMYGKCCNTRL--ARKVFDQL 189
SL++ C +L+ + K+ H ++RT F D +KL M L ARKVFD++
Sbjct: 35 SLIERCVSLRQL---KQTHGHMIRTGTF-SDPYSASKLFAMAALSSFASLEYARKVFDEI 90
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQM-RKTGPHPDKETFLVVFAACASAEAVKEG 248
K N +W+ +I YA+ + F M ++ +P+K TF + A A ++ G
Sbjct: 91 PKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLG 150
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 209/374 (55%), Gaps = 29/374 (7%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRLARKVFDQL 189
F + +C NL S K++H L S + + +NN LI +Y K N + AR VFD++
Sbjct: 348 FVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRM 407
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF 249
+ N S++ MI GYA +G G + L+L+++M +G P+K TF+ V +ACA V EG
Sbjct: 408 PELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQ 467
Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
YF MK + I P EHY +I +LG AG L EAE F++ MP++P W AL +
Sbjct: 468 EYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRK 527
Query: 310 HGDVELEDRAEELLGDLDPSKA----IVDKIPLPPRK-----------------KQSATN 348
H ++ L +RA L + P A ++ + RK K+ +
Sbjct: 528 HKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCS 587
Query: 349 MLEEKNR----VSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKA- 403
+E K + V++ S + R E ++ + +M++ GYV D ++ + DE +
Sbjct: 588 WIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEE 647
Query: 404 --LQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRF 461
L +HSE+LA+A+GL+ST L ++KNLRICGDCHNAIK MS + GRE+IVRDN RF
Sbjct: 648 MRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRF 707
Query: 462 HHFRDGKCSCGDYW 475
H F+DGKCSCGDYW
Sbjct: 708 HCFKDGKCSCGDYW 721
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 100/198 (50%), Gaps = 25/198 (12%)
Query: 129 DVFS--SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC--CNTRL-AR 183
D+F+ S+L++ +L + G++ H L + F ++ + + LI+ Y KC C+ +
Sbjct: 239 DMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSE 298
Query: 184 KVFDQLRKRNLSSWHLMISGYAANGQ-GADGLMLFEQMRKTGPHPDKETFLVVFAACASA 242
KVF ++ +L W+ MISGY+ N + + + F QM++ G PD +F+ V +AC++
Sbjct: 299 KVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNL 358
Query: 243 EAVKEGFLYFEIMKNDYGIVPGIEHYI---------AIIKVLGSAGHLIEAEEFVERMPF 293
+ + K +G+ I+ +I A+I + +G+L +A +RMP
Sbjct: 359 SSPSQ-------CKQIHGL--AIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPE 409
Query: 294 EPTVEVWEALRNFAQIHG 311
V ++ +AQ HG
Sbjct: 410 LNAVSFNCMIKGYAQ-HG 426
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 109 GKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELN-- 166
GK A+ AS++ + F +L CG L +AF E N
Sbjct: 27 GKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYAR-----------AAFYSTEEPNVF 75
Query: 167 --NKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
N +++ Y K +AR++FD++ + + S++ +ISGYA + ++LF++MRK G
Sbjct: 76 SYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLG 135
Query: 225 PHPDKETFLVVFAAC 239
D T + AAC
Sbjct: 136 FEVDGFTLSGLIAAC 150
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 127 GYDV----FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182
G++V S L+ +C + +++ K++H + F +NN + Y K R A
Sbjct: 135 GFEVDGFTLSGLIAACCD--RVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREA 192
Query: 183 RKVF---DQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239
VF D+LR SW+ MI Y + +GA L L+++M G D T V A
Sbjct: 193 VSVFYGMDELRDE--VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNAL 250
Query: 240 ASAEAVKEG 248
S + + G
Sbjct: 251 TSLDHLIGG 259
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 244 bits (622), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 26/368 (7%)
Query: 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRN 193
+ +C L S+ +G+ H D + LI+MY K + + KVF+ L++++
Sbjct: 603 VFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKS 662
Query: 194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFE 253
+SW+ MI GY +G + + LFE+M++TG +PD TFL V AC + + EG Y +
Sbjct: 663 TASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD 722
Query: 254 IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFV-ERMPFEPTVEVWEALRNFAQIHGD 312
MK+ +G+ P ++HY +I +LG AG L +A V E M E V +W++L + +IH +
Sbjct: 723 QMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQN 782
Query: 313 VELEDRAEELLGDLDPSK---------------------AIVDKIPLPPRKKQSATNMLE 351
+E+ ++ L +L+P K + ++ +K + + +E
Sbjct: 783 LEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIE 842
Query: 352 EKNRVSDYRSTDLYRGEYEKMKGLNG----QMREAGYVPDTRYVLHDIDEEAKEKALQYH 407
+V + + + +E++K L ++ + GY PDT V HD+ EE K + L+ H
Sbjct: 843 LNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGH 902
Query: 408 SERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDG 467
SE+LA+ YGLI T +R+ KNLRIC DCHNA K++SK++ RE++VRDNKRFHHF++G
Sbjct: 903 SEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNG 962
Query: 468 KCSCGDYW 475
CSCGDYW
Sbjct: 963 VCSCGDYW 970
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 15/233 (6%)
Query: 104 SLCKEGKV----REAIEYMGQDASASAGY----DVFSSLLDSCGNLKSIEMGKRVHELLR 155
+ C+ G + R E++G D S+S + + LL + G K IEMG+++H+L+
Sbjct: 52 NFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQLVS 111
Query: 156 TSAFVK-DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGL 214
S ++ D L ++I MY C + +R VFD LR +NL W+ +IS Y+ N + L
Sbjct: 112 GSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVL 171
Query: 215 MLF-EQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK 273
F E + T PD T+ V ACA V G ++ G+V + A++
Sbjct: 172 ETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKT-GLVEDVFVGNALVS 230
Query: 274 VLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDL 326
G+ G + +A + + MP E + W ++ ++ D + + LLG++
Sbjct: 231 FYGTHGFVTDALQLFDIMP-ERNLVSWNSM---IRVFSDNGFSEESFLLLGEM 279
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%)
Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
SLL +C LKS+ +GK VH + + +D+ + ++ +Y C + +FD + +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
+L SW+ +I+GY NG L +F QM G + + VF AC+ +++ G
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
+ ++ +C + + +G VH L+ + V+DV + N L+ YG A ++FD +
Sbjct: 190 YPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMP 249
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLF-EQMRKTGP---HPDKETFLVVFAACASAEAVK 246
+RNL SW+ MI ++ NG + +L E M + G PD T + V CA +
Sbjct: 250 ERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIG 309
Query: 247 EG 248
G
Sbjct: 310 LG 311
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR 192
++L C + I +GK VH K++ LNN L++MY KC A+ +F +
Sbjct: 297 TVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNK 356
Query: 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGP--HPDKETFLVVFAAC----------- 239
N+ SW+ M+ G++A G + QM G D+ T L C
Sbjct: 357 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 416
Query: 240 ASAEAVKEGFLYFEIMKNDY 259
++K+ F+Y E++ N +
Sbjct: 417 LHCYSLKQEFVYNELVANAF 436
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAAN 207
K +H FV + + N + Y KC + A++VF +R + ++SW+ +I G+A +
Sbjct: 415 KELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 474
Query: 208 GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVK-----EGFLYFEIMKNDYGIV 262
L QM+ +G PD T + +AC+ ++++ GF+ ++ D +
Sbjct: 475 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV- 533
Query: 263 PGIEHYIAIIKVLGSAGHLIEAEEFVERM 291
Y++++ + G L + + M
Sbjct: 534 -----YLSVLSLYIHCGELCTVQALFDAM 557
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 242 bits (618), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 210/370 (56%), Gaps = 25/370 (6%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
SS++ +C NL ++ GK++H ++ S F +V + + ++MY KC + R + +F +++
Sbjct: 266 LSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ 325
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
++NL W+ +ISG+A + + + ++LFE+M++ G HP++ TF + + C V+EG
Sbjct: 326 EKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRR 385
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
+F++M+ YG+ P + HY ++ +LG AG L EA E ++ +PF+PT +W +L +++
Sbjct: 386 FFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVY 445
Query: 311 GDVELEDRAEELLGDLDPSKA----IVDKIPLPPR-----------------KKQSATNM 349
++EL + A E L +L+P A ++ I + KK +
Sbjct: 446 KNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSW 505
Query: 350 LEEKNRVSDYRSTD----LYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
++ K++V + + R + L + R+ GY P + LHD++ KE+ L
Sbjct: 506 IDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLM 565
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
HSE+LA+ +GL+ P P+RI+KNLRIC DCH +K S R +IVRD RFHHF
Sbjct: 566 QHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFS 625
Query: 466 DGKCSCGDYW 475
DG CSCGD+W
Sbjct: 626 DGHCSCGDFW 635
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 103/246 (41%), Gaps = 30/246 (12%)
Query: 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYD-----------------VFSSLLDSCGN 140
VN L CK R + ++ S A YD + +L C
Sbjct: 14 FTVNFLIRCKVLPRRSNTSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCAR 73
Query: 141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLM 200
++ K H + DV L N LI Y KC LAR+VFD + +R+L SW+ M
Sbjct: 74 NGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTM 133
Query: 201 ISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC-ASAEAVKEGFLYFEIMKN-- 257
I Y N ++ L +F +MR G + T V +AC + +A++ L+ +K
Sbjct: 134 IGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCI 193
Query: 258 DYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELED 317
D + G A++ + G + +A + E M + +V W ++ + G V+ ++
Sbjct: 194 DLNLYVG----TALLDLYAKCGMIKDAVQVFESMQDKSSV-TWSSM-----VAGYVQNKN 243
Query: 318 RAEELL 323
E LL
Sbjct: 244 YEEALL 249
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 132 SSLLDSCG-NLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
SS+L +CG N ++E K++H L + ++ + L+++Y KC + A +VF+ ++
Sbjct: 166 SSVLSACGVNCDALEC-KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ 224
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-F 249
++ +W M++GY N + L+L+ + ++ ++ T V AC++ A+ EG
Sbjct: 225 DKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQ 284
Query: 250 LYFEIMKNDYG 260
++ I K+ +G
Sbjct: 285 MHAVICKSGFG 295
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 209/370 (56%), Gaps = 27/370 (7%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
+S+L +C L +E+G + H + + +D+ LNN L++MY KC + A +VF+Q++
Sbjct: 263 LTSVLRACTGLALLELGMQAH--VHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMK 320
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+R++ +W MISG A NG + L LFE+M+ +G P+ T + V AC+ A +++G+
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWY 380
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
YF MK YGI P EHY +I +LG AG L +A + + M EP W L ++
Sbjct: 381 YFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQ 440
Query: 311 GDVELEDRAEELLGDLDPSKA-----------------IVDKIPLPPR----KKQSATNM 349
++ L + A + + LDP A V++I R KK+ +
Sbjct: 441 RNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSW 500
Query: 350 LEEKNRVSDYRSTDLYRGEY----EKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
+E ++ + D + +K+ L ++ GYVP+T +VL D++ E E +L+
Sbjct: 501 IEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLR 560
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
+HSE+LA+A+GL++ P +RI KNLRICGDCH K+ SK+ R +++RD R+HHF+
Sbjct: 561 HHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQ 620
Query: 466 DGKCSCGDYW 475
DGKCSCGDYW
Sbjct: 621 DGKCSCGDYW 630
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 9/174 (5%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
+SS+L SC + + M +H + DV + + LI+++ K A VFD++
Sbjct: 165 YSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV 221
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF- 249
+ W+ +I G+A N + L LF++M++ G ++ T V AC ++ G
Sbjct: 222 TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQ 281
Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEAL 303
+ I+K D ++ A++ + G L +A +M E V W +
Sbjct: 282 AHVHIVKYDQDLILN----NALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTM 330
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 9/216 (4%)
Query: 105 LCKEGKVREAIEYMG--QDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD 162
LC + + A++ M Q A +S L+ C + +++ G + L +
Sbjct: 36 LCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPM 95
Query: 163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222
+ L N LI MY K A ++FDQ+ +RN+ SW MIS Y+ L L M +
Sbjct: 96 MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155
Query: 223 TGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLI 282
P+ T+ V +C V+ L+ I+K G+ + A+I V G
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVR--MLHCGIIKE--GLESDVFVRSALIDVFAKLGEPE 211
Query: 283 EAEEFVERMPFEPTVEVWEA-LRNFAQ-IHGDVELE 316
+A + M + VW + + FAQ DV LE
Sbjct: 212 DALSVFDEMVTGDAI-VWNSIIGGFAQNSRSDVALE 246
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 239 bits (609), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 201/371 (54%), Gaps = 26/371 (7%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F L C +L + +GK +H L + ++++ N LIEMY KC + +VF+++
Sbjct: 512 FLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMS 571
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+R++ +W MI Y G+G L F M K+G PD F+ + AC+ + V EG
Sbjct: 572 RRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLA 631
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
FE MK Y I P IEHY ++ +L + + +AEEF++ MP +P +W ++ +
Sbjct: 632 CFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTS 691
Query: 311 GDVELEDRAEELLGDL---DPSKAIV-----------DKIPLPPRK-------KQSATNM 349
GD+E +R + +L DP +I+ DK+ L + K +
Sbjct: 692 GDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSW 751
Query: 350 LEEKNRVSDYRSTD----LYRGEYEKMKGLNGQMREAGYVPDTRYVLHDI-DEEAKEKAL 404
+E V + S D Y+ ++ L M + GY+PD R V ++ +EE K + +
Sbjct: 752 IEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLI 811
Query: 405 QYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHF 464
HSERLAIA+GL++T P PL+++KNLR+CGDCH K++SKIVGRE++VRD RFH F
Sbjct: 812 CGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLF 871
Query: 465 RDGKCSCGDYW 475
+DG CSC D W
Sbjct: 872 KDGTCSCKDRW 882
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 104 SLCKEGKVREAIEYMGQ--DASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK 161
+ K G EA+E+ G+ ++ S F S++ +C L EMG V+E + F
Sbjct: 80 AFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFES 139
Query: 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMR 221
D+ + N L++MY + AR+VFD++ R+L SW+ +ISGY+++G + L ++ +++
Sbjct: 140 DLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELK 199
Query: 222 KTGPHPDKETFLVVFAACASAEAVKEG 248
+ PD T V A + VK+G
Sbjct: 200 NSWIVPDSFTVSSVLPAFGNLLVVKQG 226
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 7/204 (3%)
Query: 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRN 193
L+ L ++ GK +H S D+ ++N LI+MY KC + K+F + +
Sbjct: 414 LISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGD 473
Query: 194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF-LYF 252
+W+ +IS G A GL + QMRK+ PD TFLV CAS A + G ++
Sbjct: 474 TVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHC 533
Query: 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGD 312
+++ +G ++ A+I++ G L + ERM V W + ++G+
Sbjct: 534 CLLR--FGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVV-TWTGMIYAYGMYGE 590
Query: 313 VELEDRAEELLGDLDPSKAIVDKI 336
E +A E D++ S + D +
Sbjct: 591 GE---KALETFADMEKSGIVPDSV 611
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%)
Query: 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK 191
SS+L +CG+L+ + + K ++ + + FV + + N LI++Y KC + AR VF+ +
Sbjct: 311 SSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMEC 370
Query: 192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
++ SW+ +ISGY +G + + LF+ M D T+L++ + +K G
Sbjct: 371 KDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFG 427
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 6/184 (3%)
Query: 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR- 190
S L S NL + +R+H L+ + + KLI+ Y + VF ++
Sbjct: 11 SRALSSSSNLNEL---RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSP 67
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
+N+ W+ +I ++ NG + L + ++R++ PDK TF V ACA + G L
Sbjct: 68 AKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDL 127
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
+E + D G + A++ + G L A + + MP V W +L + H
Sbjct: 128 VYEQIL-DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS-WNSLISGYSSH 185
Query: 311 GDVE 314
G E
Sbjct: 186 GYYE 189
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK 191
SS+L + GNL ++ G+ +H S V +NN L+ MY K AR+VFD++
Sbjct: 211 SSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDV 270
Query: 192 RNLSSWHLMISGYAANGQGADGL-MLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG-F 249
R+ S++ MI GY + + M E + + PD T V AC + +
Sbjct: 271 RDSVSYNTMICGYLKLEMVEESVRMFLENLDQF--KPDLLTVSSVLRACGHLRDLSLAKY 328
Query: 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
+Y ++K + + + + +I V G +I A + M + TV W ++ I
Sbjct: 329 IYNYMLKAGFVLESTVRN--ILIDVYAKCGDMITARDVFNSMECKDTVS-WNSI-----I 380
Query: 310 HGDVELEDRAEEL 322
G ++ D E +
Sbjct: 381 SGYIQSGDLMEAM 393
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 239 bits (609), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/369 (35%), Positives = 208/369 (56%), Gaps = 24/369 (6%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F+S L+SC L +++ GK +H + D + N L+ MY N A VF ++
Sbjct: 329 FASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIF 388
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
K+++ SW+ +I G A +G+G ++F QM + PD+ TF + +AC+ +++G
Sbjct: 389 KKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRK 448
Query: 251 YFEIMKNDYG-IVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309
F M + I I+HY ++ +LG G L EAEE +ERM +P VW AL + ++
Sbjct: 449 LFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRM 508
Query: 310 HGDVELEDRAEELLGDLDPSKAI-----------------VDKIPLPPRK----KQSATN 348
H DV+ ++A + +LD + V K+ + +K K+ ++
Sbjct: 509 HSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSS 568
Query: 349 MLEEKNRVSDYRSTDLYRGE--YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQY 406
+ + + ++ S D YEK++ L +++E GY PD R LHD+++E KE+ L Y
Sbjct: 569 WVVIRGKKHEFFSGDQPHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWY 628
Query: 407 HSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRD 466
HSERLAIA+GLI+T + ++KNLR+C DCH IK++S +VGRE+++RD RFHHF++
Sbjct: 629 HSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKN 688
Query: 467 GKCSCGDYW 475
G CSCGDYW
Sbjct: 689 GTCSCGDYW 697
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F+ ++ +C N + MG +VH L+ F+ + ++ LI Y C +RKVFD+
Sbjct: 228 FTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKV 287
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248
++ W ++SGY+ N + D L +F M + P++ TF +C++ + G
Sbjct: 288 HEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWG 345
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQ 219
VKD N ++ Y + A K+F Q+ +N+ SW MI G N + + L LF+
Sbjct: 156 VKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKN 215
Query: 220 MRKTGPHPDKETFLVVFAACASAEA-----------VKEGFLYFE 253
M + F V ACA+A A +K GFLY E
Sbjct: 216 MLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEE 260
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 80/182 (43%), Gaps = 25/182 (13%)
Query: 158 AFVKDVELNNKLIEMYGKCCNTRL--ARKVFDQLRKRNLSSWHLMISGYAANGQGADGLM 215
+F VE N+ + + + R+ AR+VF+Q+ ++S + MI+GY + + D L
Sbjct: 28 SFSVTVEFQNREVLICNHLLSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALN 87
Query: 216 LFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVL 275
LF++M P D ++ + + C + F+ M + + A++
Sbjct: 88 LFDEM----PVRDVVSWNSMISGCVECGDMNTAVKLFDEMPE-----RSVVSWTAMVNGC 138
Query: 276 GSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDK 335
+G + +AE +MP + T W ++ +HG ++ G +D + + +
Sbjct: 139 FRSGKVDQAERLFYQMPVKDTA-AWNSM-----VHGYLQ--------FGKVDDALKLFKQ 184
Query: 336 IP 337
+P
Sbjct: 185 MP 186
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 238 bits (607), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 128/370 (34%), Positives = 198/370 (53%), Gaps = 25/370 (6%)
Query: 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190
F+ LL+S L ++ G +H L+ S + V + N L+ MY K + ARK F +
Sbjct: 341 FAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMT 400
Query: 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250
R++ +W+ MISG + +G G + L F++M TG P++ TF+ V AC+ V++G
Sbjct: 401 FRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQGLH 460
Query: 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310
YF + + + P I+HY I+ +L AG +AE+F+ P E V W L N +
Sbjct: 461 YFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLNACYVR 520
Query: 311 GDVELEDRAEELLGDLDPSKA----IVDKIPLPPR-----------------KKQSATNM 349
+ L + E + P+ + ++ I R KK+ +
Sbjct: 521 RNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSW 580
Query: 350 LEEKNRVSDYRSTDLYRGE----YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQ 405
+ +N+ + + D E Y K+K + +++ GY PD HD+DEE +E L
Sbjct: 581 IGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLS 640
Query: 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465
YHSE+LA+AYGLI TP + PL + KN+RIC DCH+AIK++SKI R +++RD+ RFHHF
Sbjct: 641 YHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFL 700
Query: 466 DGKCSCGDYW 475
DG+CSC DYW
Sbjct: 701 DGQCSCCDYW 710
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 129 DVFSSLLDSCGNLKSIEMGKRVHELL---RTSAFVKDVELNNKLIEMYGKCCNTRLARKV 185
D + LL C N + +G+ +H L S+ +D N LI +Y KC T ARK+
Sbjct: 32 DRLNELLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKL 91
Query: 186 FDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVFAACASAEA 244
FD + +RN+ SW M+ GY +G + L LF+ M +G P++ VVF +C+++
Sbjct: 92 FDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGR 151
Query: 245 VKEG 248
++EG
Sbjct: 152 IEEG 155
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 10/208 (4%)
Query: 109 GKVREAIEYMGQDASASAGYD--VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELN 166
G +E ++ + + A+ ++ + S L NL+ + + +VH + F +VE
Sbjct: 216 GAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEAC 275
Query: 167 NKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH 226
LI MYGKC A++VFD +N+ ++ Y + + L LF +M
Sbjct: 276 GALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVP 335
Query: 227 PDKETFLVVFAACASAEAVKEG-FLYFEIMKNDY--GIVPGIEHYIAIIKVLGSAGHLIE 283
P++ TF ++ + A +K+G L+ ++K+ Y ++ G A++ + +G + +
Sbjct: 336 PNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVG----NALVNMYAKSGSIED 391
Query: 284 AEEFVERMPFEPTVEVWEALRNFAQIHG 311
A + M F V W + + HG
Sbjct: 392 ARKAFSGMTFRDIV-TWNTMISGCSHHG 418
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189
V + + SC N IE GK+ H + + N L+ MY C A +V D L
Sbjct: 138 VATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDL 197
Query: 190 RKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224
+LS + +SGY G +GL + +RKT
Sbjct: 198 PYCDLSVFSSALSGYLECGAFKEGL---DVLRKTA 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,799,573
Number of Sequences: 539616
Number of extensions: 7540573
Number of successful extensions: 23429
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 165
Number of HSP's that attempted gapping in prelim test: 21333
Number of HSP's gapped (non-prelim): 1655
length of query: 475
length of database: 191,569,459
effective HSP length: 121
effective length of query: 354
effective length of database: 126,275,923
effective search space: 44701676742
effective search space used: 44701676742
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)