Query 038373
Match_columns 475
No_of_seqs 510 out of 3751
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 10:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 5.7E-74 1.2E-78 615.7 38.2 391 85-475 280-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.5E-67 3.3E-72 578.6 37.1 397 75-473 435-857 (857)
3 PLN03081 pentatricopeptide (PP 100.0 4.4E-53 9.4E-58 454.2 22.3 374 90-472 184-585 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 3.9E-52 8.3E-57 456.8 19.9 383 77-467 235-666 (857)
5 PLN03218 maturation of RBCL 1; 100.0 1.8E-51 4E-56 446.8 24.2 358 92-474 403-770 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.8E-51 3.9E-56 446.8 22.2 357 88-469 430-799 (1060)
7 PRK11788 tetratricopeptide rep 99.8 8.3E-17 1.8E-21 161.7 26.5 274 93-389 67-354 (389)
8 PRK11788 tetratricopeptide rep 99.8 1.9E-16 4E-21 159.2 25.1 267 102-396 42-323 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.7 2.4E-15 5.1E-20 166.5 27.9 234 93-330 531-769 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.7 8.8E-16 1.9E-20 169.9 23.8 373 92-473 496-886 (899)
11 PF13041 PPR_2: PPR repeat fam 99.6 3.7E-15 8.1E-20 102.6 6.8 50 192-241 1-50 (50)
12 KOG4422 Uncharacterized conser 99.5 2E-11 4.4E-16 116.0 24.8 227 92-322 204-458 (625)
13 PF14432 DYW_deaminase: DYW fa 99.5 6.8E-14 1.5E-18 113.6 6.5 99 357-465 9-116 (116)
14 PF13041 PPR_2: PPR repeat fam 99.4 3.8E-13 8.2E-18 92.5 6.3 50 126-175 1-50 (50)
15 PRK15174 Vi polysaccharide exp 99.3 4.4E-10 9.6E-15 119.9 26.4 230 97-331 78-318 (656)
16 TIGR00990 3a0801s09 mitochondr 99.3 1.4E-09 2.9E-14 116.0 28.4 230 98-331 130-433 (615)
17 PRK15174 Vi polysaccharide exp 99.3 1.5E-09 3.2E-14 115.9 28.0 231 95-330 144-385 (656)
18 TIGR00990 3a0801s09 mitochondr 99.2 8.4E-09 1.8E-13 110.0 28.8 229 93-327 329-572 (615)
19 KOG4422 Uncharacterized conser 99.2 1.3E-09 2.8E-14 103.9 17.4 175 130-313 118-328 (625)
20 PRK09782 bacteriophage N4 rece 99.1 2.6E-08 5.6E-13 109.5 27.7 230 94-331 476-711 (987)
21 TIGR02521 type_IV_pilW type IV 99.1 3.7E-08 8.1E-13 90.4 24.6 193 95-291 31-229 (234)
22 PF12854 PPR_1: PPR repeat 99.1 1.2E-10 2.6E-15 72.4 4.6 34 157-190 1-34 (34)
23 TIGR02521 type_IV_pilW type IV 99.1 9.7E-08 2.1E-12 87.7 24.9 196 128-326 31-232 (234)
24 PF13429 TPR_15: Tetratricopep 99.0 1.5E-10 3.3E-15 110.8 4.9 223 104-331 17-248 (280)
25 KOG4626 O-linked N-acetylgluco 99.0 1.8E-08 3.9E-13 100.2 19.1 187 137-330 295-489 (966)
26 PRK10049 pgaA outer membrane p 99.0 1.5E-07 3.4E-12 102.5 26.6 346 93-451 47-456 (765)
27 KOG4626 O-linked N-acetylgluco 99.0 6.7E-09 1.4E-13 103.2 13.8 328 95-450 116-484 (966)
28 PF12854 PPR_1: PPR repeat 99.0 6.2E-10 1.4E-14 69.2 4.3 32 260-291 2-33 (34)
29 PRK09782 bacteriophage N4 rece 99.0 3.6E-07 7.9E-12 100.6 28.2 234 92-331 506-745 (987)
30 PF13429 TPR_15: Tetratricopep 99.0 3.7E-09 8E-14 101.3 11.3 220 97-323 46-274 (280)
31 PRK11447 cellulose synthase su 99.0 2E-07 4.4E-12 106.2 26.2 228 93-329 383-669 (1157)
32 KOG4318 Bicoid mRNA stability 98.9 7.5E-09 1.6E-13 106.7 12.7 254 91-395 21-278 (1088)
33 PRK10747 putative protoheme IX 98.9 2.9E-07 6.2E-12 92.7 23.4 257 108-394 97-367 (398)
34 PRK10747 putative protoheme IX 98.9 1.2E-06 2.7E-11 88.1 27.3 215 102-324 125-388 (398)
35 PRK11447 cellulose synthase su 98.9 1E-06 2.2E-11 100.6 28.7 222 98-328 464-702 (1157)
36 KOG1840 Kinesin light chain [C 98.9 3.9E-07 8.4E-12 92.3 22.4 229 97-325 201-478 (508)
37 TIGR00540 hemY_coli hemY prote 98.9 1.6E-06 3.5E-11 87.6 27.2 220 102-323 160-396 (409)
38 PRK12370 invasion protein regu 98.9 1.1E-06 2.3E-11 92.4 26.5 226 93-325 254-501 (553)
39 KOG4318 Bicoid mRNA stability 98.9 2E-08 4.3E-13 103.6 12.6 193 93-312 57-286 (1088)
40 TIGR00540 hemY_coli hemY prote 98.9 3E-07 6.5E-12 92.9 20.9 274 98-394 85-376 (409)
41 PRK10049 pgaA outer membrane p 98.9 1.4E-06 3.1E-11 95.0 27.5 237 93-331 81-393 (765)
42 KOG1126 DNA-binding cell divis 98.8 1.9E-07 4.1E-12 94.1 17.1 223 103-331 361-625 (638)
43 PRK12370 invasion protein regu 98.8 1.9E-06 4.2E-11 90.5 24.9 196 109-313 318-523 (553)
44 TIGR00756 PPR pentatricopeptid 98.6 4.1E-08 8.8E-13 61.5 4.2 35 195-229 1-35 (35)
45 PRK14574 hmsH outer membrane p 98.6 5.9E-06 1.3E-10 89.4 21.3 332 97-450 37-395 (822)
46 COG3071 HemY Uncharacterized e 98.5 0.00013 2.7E-09 70.0 26.0 223 95-324 118-388 (400)
47 PRK11189 lipoprotein NlpI; Pro 98.5 5.6E-05 1.2E-09 72.9 24.0 91 131-222 67-160 (296)
48 PF04733 Coatomer_E: Coatomer 98.5 1.7E-05 3.7E-10 75.8 19.9 229 94-331 34-270 (290)
49 PF13812 PPR_3: Pentatricopept 98.5 1.9E-07 4.2E-12 58.1 4.3 34 194-227 1-34 (34)
50 COG2956 Predicted N-acetylgluc 98.4 4.9E-05 1.1E-09 70.9 20.3 214 107-323 47-275 (389)
51 KOG1126 DNA-binding cell divis 98.4 6.8E-06 1.5E-10 83.2 15.7 192 92-291 418-617 (638)
52 PRK11189 lipoprotein NlpI; Pro 98.4 0.00013 2.9E-09 70.3 24.0 204 95-304 64-277 (296)
53 KOG1129 TPR repeat-containing 98.4 2.9E-05 6.3E-10 72.4 17.1 226 99-328 227-460 (478)
54 KOG1155 Anaphase-promoting com 98.4 8.5E-06 1.8E-10 79.1 14.2 219 103-325 235-494 (559)
55 PRK14574 hmsH outer membrane p 98.4 0.00012 2.6E-09 79.5 24.6 196 134-332 298-519 (822)
56 PF01535 PPR: PPR repeat; Int 98.4 4E-07 8.7E-12 55.3 3.2 31 195-225 1-31 (31)
57 COG3071 HemY Uncharacterized e 98.3 0.00026 5.7E-09 67.9 23.2 277 100-404 87-377 (400)
58 KOG1840 Kinesin light chain [C 98.3 0.00023 5E-09 72.5 22.2 200 92-291 237-476 (508)
59 PF12569 NARP1: NMDA receptor- 98.2 0.00078 1.7E-08 69.3 25.4 220 104-327 13-292 (517)
60 KOG2003 TPR repeat-containing 98.2 0.00028 6E-09 68.6 20.5 186 141-331 503-694 (840)
61 COG3063 PilF Tfp pilus assembl 98.2 0.00081 1.8E-08 60.1 21.3 196 131-330 38-240 (250)
62 KOG1129 TPR repeat-containing 98.2 5E-05 1.1E-09 70.8 14.0 207 88-297 249-462 (478)
63 KOG1155 Anaphase-promoting com 98.2 0.00037 8.1E-09 68.1 19.9 185 129-318 331-528 (559)
64 COG2956 Predicted N-acetylgluc 98.1 0.00094 2E-08 62.5 21.1 185 102-291 76-275 (389)
65 TIGR00756 PPR pentatricopeptid 98.1 3.5E-06 7.5E-11 52.5 3.8 33 130-162 2-34 (35)
66 PLN02789 farnesyltranstransfer 98.1 0.002 4.2E-08 62.5 24.0 210 96-310 38-268 (320)
67 PF13812 PPR_3: Pentatricopept 98.1 6.2E-06 1.3E-10 51.1 4.3 33 129-161 2-34 (34)
68 PF12569 NARP1: NMDA receptor- 98.0 0.0052 1.1E-07 63.4 25.8 232 92-330 34-342 (517)
69 TIGR03302 OM_YfiO outer membra 98.0 0.001 2.3E-08 61.6 19.4 181 93-291 31-229 (235)
70 KOG1070 rRNA processing protei 98.0 0.002 4.3E-08 70.8 23.1 222 92-319 1454-1693(1710)
71 PF06239 ECSIT: Evolutionarily 98.0 0.00015 3.3E-09 64.4 12.1 116 126-256 45-166 (228)
72 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00049 1.1E-08 68.2 17.0 128 165-296 171-299 (395)
73 PF04733 Coatomer_E: Coatomer 97.9 0.00094 2E-08 63.9 18.5 190 92-291 63-262 (290)
74 TIGR03302 OM_YfiO outer membra 97.9 0.001 2.2E-08 61.8 18.4 178 127-326 32-232 (235)
75 KOG2076 RNA polymerase III tra 97.9 0.013 2.9E-07 61.9 27.2 198 93-291 137-342 (895)
76 KOG2003 TPR repeat-containing 97.9 0.0036 7.9E-08 61.0 21.0 198 108-313 503-710 (840)
77 COG3063 PilF Tfp pilus assembl 97.9 0.0046 1E-07 55.4 19.9 200 98-301 38-244 (250)
78 KOG2002 TPR-containing nuclear 97.9 0.00093 2E-08 70.8 18.0 222 105-330 506-749 (1018)
79 PF01535 PPR: PPR repeat; Int 97.8 1.8E-05 3.9E-10 47.8 3.2 27 165-191 2-28 (31)
80 KOG1070 rRNA processing protei 97.8 0.002 4.3E-08 70.8 19.9 199 124-326 1453-1663(1710)
81 KOG0495 HAT repeat protein [RN 97.8 0.015 3.2E-07 59.6 24.6 234 95-330 618-884 (913)
82 cd05804 StaR_like StaR_like; a 97.8 0.0066 1.4E-07 60.0 22.6 195 95-291 6-212 (355)
83 cd05804 StaR_like StaR_like; a 97.8 0.0089 1.9E-07 59.1 23.0 220 104-325 52-292 (355)
84 KOG1174 Anaphase-promoting com 97.7 0.023 5E-07 55.2 23.6 230 92-328 229-502 (564)
85 PF08579 RPM2: Mitochondrial r 97.7 0.00047 1E-08 54.6 10.2 87 132-241 29-116 (120)
86 PF06239 ECSIT: Evolutionarily 97.7 0.00031 6.7E-09 62.4 10.2 98 183-281 34-154 (228)
87 KOG2076 RNA polymerase III tra 97.7 0.02 4.3E-07 60.7 24.8 238 92-331 170-483 (895)
88 KOG1173 Anaphase-promoting com 97.7 0.0068 1.5E-07 60.9 20.5 231 99-332 248-524 (611)
89 KOG0547 Translocase of outer m 97.7 0.0026 5.5E-08 62.8 17.0 208 106-319 337-559 (606)
90 KOG1128 Uncharacterized conser 97.7 0.00076 1.7E-08 69.4 13.8 214 101-331 404-621 (777)
91 PF10037 MRP-S27: Mitochondria 97.7 0.00057 1.2E-08 68.1 12.5 118 160-278 63-186 (429)
92 PRK15359 type III secretion sy 97.6 0.0021 4.5E-08 54.8 14.1 88 134-222 30-120 (144)
93 COG5010 TadD Flp pilus assembl 97.6 0.014 3E-07 53.4 19.7 155 132-291 70-228 (257)
94 PF08579 RPM2: Mitochondrial r 97.6 0.00077 1.7E-08 53.4 9.9 81 196-277 27-116 (120)
95 COG5010 TadD Flp pilus assembl 97.6 0.008 1.7E-07 54.9 17.7 155 99-255 70-228 (257)
96 KOG0547 Translocase of outer m 97.6 0.0067 1.5E-07 59.9 18.2 189 98-291 363-563 (606)
97 PRK15359 type III secretion sy 97.6 0.0031 6.7E-08 53.7 14.2 89 199-291 29-118 (144)
98 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.002 4.3E-08 63.9 14.5 124 127-256 168-295 (395)
99 PRK10370 formate-dependent nit 97.5 0.02 4.3E-07 51.6 19.5 114 141-256 52-171 (198)
100 KOG3616 Selective LIM binding 97.5 0.0027 5.9E-08 65.3 15.0 103 107-218 744-848 (1636)
101 PRK10370 formate-dependent nit 97.5 0.0032 7E-08 56.7 14.0 123 108-232 52-181 (198)
102 TIGR02552 LcrH_SycD type III s 97.5 0.0037 8E-08 52.3 13.5 90 132-222 21-113 (135)
103 KOG1173 Anaphase-promoting com 97.5 0.013 2.9E-07 58.9 18.6 207 95-307 312-532 (611)
104 PF10037 MRP-S27: Mitochondria 97.4 0.0016 3.5E-08 64.9 11.9 117 193-310 65-186 (429)
105 PRK15179 Vi polysaccharide bio 97.4 0.02 4.3E-07 61.4 20.8 139 127-271 85-228 (694)
106 COG4783 Putative Zn-dependent 97.4 0.048 1E-06 54.2 21.6 189 91-301 270-463 (484)
107 KOG0495 HAT repeat protein [RN 97.4 0.12 2.7E-06 53.1 24.8 180 141-326 597-783 (913)
108 COG4783 Putative Zn-dependent 97.4 0.031 6.8E-07 55.5 20.2 116 203-323 315-434 (484)
109 PF09976 TPR_21: Tetratricopep 97.3 0.008 1.7E-07 51.2 13.9 121 166-290 15-143 (145)
110 KOG2002 TPR-containing nuclear 97.3 0.073 1.6E-06 57.0 23.1 233 92-330 267-529 (1018)
111 KOG3081 Vesicle coat complex C 97.3 0.12 2.6E-06 47.5 21.5 174 148-328 93-273 (299)
112 PF09976 TPR_21: Tetratricopep 97.3 0.012 2.6E-07 50.1 14.7 122 97-219 14-143 (145)
113 TIGR02552 LcrH_SycD type III s 97.3 0.0099 2.2E-07 49.6 14.0 93 163-256 17-112 (135)
114 KOG1128 Uncharacterized conser 97.3 0.0047 1E-07 63.8 13.7 186 95-291 424-613 (777)
115 PF05843 Suf: Suppressor of fo 97.3 0.0028 6.1E-08 60.5 11.3 131 196-329 3-139 (280)
116 PRK15179 Vi polysaccharide bio 97.2 0.018 3.9E-07 61.7 18.1 141 94-236 85-229 (694)
117 cd00189 TPR Tetratricopeptide 97.2 0.0043 9.3E-08 47.0 10.0 87 100-187 5-92 (100)
118 PF05843 Suf: Suppressor of fo 97.2 0.0095 2.1E-07 56.9 14.1 128 163-291 1-133 (280)
119 KOG3616 Selective LIM binding 97.2 0.034 7.4E-07 57.6 18.1 165 98-291 768-934 (1636)
120 PRK14720 transcript cleavage f 97.2 0.054 1.2E-06 59.1 20.6 209 93-308 29-268 (906)
121 KOG3081 Vesicle coat complex C 97.2 0.027 5.8E-07 51.7 15.5 115 137-258 117-236 (299)
122 PRK04841 transcriptional regul 97.1 0.1 2.2E-06 58.6 24.0 229 96-325 492-759 (903)
123 cd00189 TPR Tetratricopeptide 97.1 0.0084 1.8E-07 45.3 10.8 90 198-290 4-93 (100)
124 KOG1915 Cell cycle control pro 97.1 0.34 7.4E-06 48.2 23.1 234 92-331 171-471 (677)
125 KOG3617 WD40 and TPR repeat-co 97.1 0.12 2.7E-06 54.4 21.0 60 241-313 924-983 (1416)
126 KOG1125 TPR repeat-containing 97.0 0.092 2E-06 53.2 19.5 205 105-315 295-560 (579)
127 KOG3785 Uncharacterized conser 97.0 0.026 5.7E-07 53.7 14.7 194 104-330 294-494 (557)
128 KOG1915 Cell cycle control pro 96.9 0.17 3.7E-06 50.3 19.5 208 107-318 85-301 (677)
129 KOG1914 mRNA cleavage and poly 96.9 0.07 1.5E-06 53.7 16.7 126 130-256 368-499 (656)
130 KOG2047 mRNA splicing factor [ 96.9 0.39 8.4E-06 49.6 22.1 138 165-305 389-555 (835)
131 PRK04841 transcriptional regul 96.9 0.34 7.4E-06 54.4 24.8 222 104-325 461-719 (903)
132 PF12921 ATP13: Mitochondrial 96.8 0.0044 9.6E-08 51.2 7.2 79 195-273 3-96 (126)
133 PLN02789 farnesyltranstransfer 96.8 0.43 9.4E-06 46.3 21.9 169 139-311 48-231 (320)
134 TIGR02795 tol_pal_ybgF tol-pal 96.8 0.034 7.4E-07 44.9 12.4 90 167-256 6-103 (119)
135 KOG1156 N-terminal acetyltrans 96.8 0.7 1.5E-05 47.7 23.6 222 105-330 51-287 (700)
136 PRK02603 photosystem I assembl 96.8 0.041 9E-07 48.3 13.7 126 97-244 37-166 (172)
137 TIGR02795 tol_pal_ybgF tol-pal 96.8 0.034 7.4E-07 44.9 12.4 93 199-291 7-102 (119)
138 KOG1125 TPR repeat-containing 96.8 0.053 1.2E-06 54.9 15.4 189 139-330 296-497 (579)
139 KOG3060 Uncharacterized conser 96.7 0.49 1.1E-05 43.4 19.4 177 142-323 26-214 (289)
140 KOG3785 Uncharacterized conser 96.6 0.37 7.9E-06 46.2 19.0 105 270-400 398-506 (557)
141 PF12921 ATP13: Mitochondrial 96.6 0.033 7.1E-07 46.0 10.8 85 228-312 1-103 (126)
142 KOG0985 Vesicle coat protein c 96.6 0.76 1.6E-05 49.9 22.5 86 195-289 1105-1190(1666)
143 PLN03088 SGT1, suppressor of 96.6 0.04 8.6E-07 54.6 13.0 95 139-236 13-110 (356)
144 PF12895 Apc3: Anaphase-promot 96.5 0.0086 1.9E-07 45.6 6.5 79 207-289 2-82 (84)
145 KOG3941 Intermediate in Toll s 96.5 0.029 6.3E-07 51.8 10.7 99 142-256 86-186 (406)
146 PRK02603 photosystem I assembl 96.5 0.087 1.9E-06 46.2 13.8 58 165-222 37-100 (172)
147 KOG0985 Vesicle coat protein c 96.5 0.38 8.2E-06 52.1 19.8 199 95-311 1104-1327(1666)
148 PF04840 Vps16_C: Vps16, C-ter 96.5 0.61 1.3E-05 45.2 20.2 104 196-317 179-282 (319)
149 PRK14720 transcript cleavage f 96.4 0.26 5.6E-06 53.9 18.9 141 120-276 108-268 (906)
150 CHL00033 ycf3 photosystem I as 96.4 0.099 2.1E-06 45.6 13.4 79 95-174 35-117 (168)
151 KOG2376 Signal recognition par 96.4 0.35 7.6E-06 49.4 18.3 119 101-225 18-141 (652)
152 KOG4340 Uncharacterized conser 96.4 0.54 1.2E-05 44.1 18.1 187 98-291 13-204 (459)
153 PF14938 SNAP: Soluble NSF att 96.4 0.13 2.8E-06 49.1 15.1 201 97-327 37-264 (282)
154 PF12895 Apc3: Anaphase-promot 96.4 0.016 3.6E-07 44.0 7.2 20 169-188 31-50 (84)
155 KOG3941 Intermediate in Toll s 96.4 0.027 5.9E-07 52.0 9.4 100 181-281 52-174 (406)
156 PRK10153 DNA-binding transcrip 96.2 0.15 3.2E-06 53.0 15.4 136 126-268 335-489 (517)
157 KOG0624 dsRNA-activated protei 96.2 1.2 2.7E-05 42.6 22.0 224 105-332 116-376 (504)
158 KOG2047 mRNA splicing factor [ 96.2 0.41 8.8E-06 49.4 17.5 174 112-291 92-274 (835)
159 PLN03088 SGT1, suppressor of 96.2 0.077 1.7E-06 52.5 12.6 92 204-299 12-105 (356)
160 PF14559 TPR_19: Tetratricopep 96.1 0.04 8.6E-07 39.8 7.6 49 141-190 4-52 (68)
161 CHL00033 ycf3 photosystem I as 96.1 0.15 3.2E-06 44.5 12.6 61 196-256 37-99 (168)
162 PF14559 TPR_19: Tetratricopep 96.0 0.03 6.6E-07 40.4 6.7 60 241-303 3-64 (68)
163 PRK10153 DNA-binding transcrip 96.0 0.33 7.1E-06 50.5 16.6 141 157-300 331-489 (517)
164 KOG4340 Uncharacterized conser 96.0 0.38 8.3E-06 45.0 14.8 142 172-316 153-329 (459)
165 KOG2053 Mitochondrial inherita 95.9 2.2 4.9E-05 45.8 21.8 195 92-291 39-252 (932)
166 KOG2796 Uncharacterized conser 95.9 0.54 1.2E-05 43.3 15.1 60 131-190 180-239 (366)
167 KOG2053 Mitochondrial inherita 95.8 3.4 7.3E-05 44.6 22.9 177 105-289 19-214 (932)
168 PF12688 TPR_5: Tetratrico pep 95.8 0.21 4.5E-06 40.8 11.4 106 202-308 9-117 (120)
169 KOG0553 TPR repeat-containing 95.8 0.13 2.8E-06 48.2 11.2 97 204-305 91-190 (304)
170 KOG1914 mRNA cleavage and poly 95.8 0.63 1.4E-05 47.1 16.5 126 195-323 367-498 (656)
171 KOG2041 WD40 repeat protein [G 95.7 0.93 2E-05 47.3 17.8 184 111-320 679-875 (1189)
172 KOG1156 N-terminal acetyltrans 95.7 2.3 4.9E-05 44.2 20.4 218 105-327 195-469 (700)
173 PF13170 DUF4003: Protein of u 95.7 1.2 2.6E-05 42.8 17.8 143 126-271 58-223 (297)
174 PF04840 Vps16_C: Vps16, C-ter 95.7 1.1 2.3E-05 43.5 17.6 208 97-315 2-255 (319)
175 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.46 1E-05 47.5 14.8 66 92-157 72-141 (453)
176 PF14938 SNAP: Soluble NSF att 95.5 0.94 2E-05 43.2 16.7 117 196-328 96-227 (282)
177 PRK15363 pathogenicity island 95.5 0.55 1.2E-05 40.1 13.0 88 170-258 42-132 (157)
178 KOG1174 Anaphase-promoting com 95.5 1 2.2E-05 44.2 16.2 154 137-296 343-503 (564)
179 KOG2376 Signal recognition par 95.4 1 2.2E-05 46.1 16.7 176 133-323 17-201 (652)
180 PF13432 TPR_16: Tetratricopep 95.4 0.061 1.3E-06 38.4 6.2 51 172-222 6-59 (65)
181 PF03704 BTAD: Bacterial trans 95.3 0.12 2.6E-06 43.8 8.9 67 165-231 64-138 (146)
182 PRK15363 pathogenicity island 95.2 0.36 7.8E-06 41.2 10.9 84 104-188 44-128 (157)
183 KOG1127 TPR repeat-containing 95.1 1.1 2.3E-05 48.8 16.3 122 131-255 495-622 (1238)
184 PF12688 TPR_5: Tetratrico pep 95.0 0.66 1.4E-05 37.9 11.8 83 138-220 11-101 (120)
185 smart00299 CLH Clathrin heavy 95.0 1.5 3.3E-05 36.7 14.6 44 132-176 11-54 (140)
186 PF13281 DUF4071: Domain of un 94.9 3.3 7.2E-05 40.8 18.3 161 168-331 146-339 (374)
187 KOG3617 WD40 and TPR repeat-co 94.9 1 2.2E-05 47.9 15.2 53 232-291 941-993 (1416)
188 KOG3060 Uncharacterized conser 94.8 3.4 7.3E-05 38.1 19.6 178 108-291 25-217 (289)
189 PF13424 TPR_12: Tetratricopep 94.7 0.13 2.9E-06 38.2 6.5 55 165-219 7-71 (78)
190 PF13432 TPR_16: Tetratricopep 94.6 0.12 2.5E-06 36.9 5.8 54 201-256 4-58 (65)
191 KOG0553 TPR repeat-containing 94.6 0.46 1E-05 44.6 10.9 94 138-234 91-187 (304)
192 KOG1538 Uncharacterized conser 94.5 0.83 1.8E-05 47.2 13.4 218 93-323 554-843 (1081)
193 PF03704 BTAD: Bacterial trans 94.5 0.18 3.8E-06 42.8 7.7 68 98-165 65-138 (146)
194 COG4700 Uncharacterized protei 94.4 3.3 7.2E-05 36.4 16.7 122 160-286 86-214 (251)
195 COG5107 RNA14 Pre-mRNA 3'-end 94.2 0.99 2.1E-05 44.8 12.7 141 163-308 397-546 (660)
196 PRK10803 tol-pal system protei 93.9 0.92 2E-05 42.7 11.8 94 196-291 145-243 (263)
197 KOG4162 Predicted calmodulin-b 93.9 4.6 0.0001 42.8 17.4 164 157-322 317-538 (799)
198 COG5107 RNA14 Pre-mRNA 3'-end 93.9 6.8 0.00015 39.2 17.5 136 192-331 395-536 (660)
199 KOG1127 TPR repeat-containing 93.7 2 4.3E-05 46.8 14.8 172 144-323 474-656 (1238)
200 PF13424 TPR_12: Tetratricopep 93.6 0.2 4.3E-06 37.2 5.6 62 195-256 6-73 (78)
201 PRK10866 outer membrane biogen 93.5 6.4 0.00014 36.6 19.4 51 273-323 183-238 (243)
202 KOG2796 Uncharacterized conser 93.5 2 4.4E-05 39.7 12.5 139 98-238 180-328 (366)
203 PF13414 TPR_11: TPR repeat; P 93.4 0.34 7.4E-06 34.9 6.4 62 95-156 3-66 (69)
204 PF13414 TPR_11: TPR repeat; P 93.4 0.4 8.6E-06 34.5 6.7 60 163-222 3-66 (69)
205 PLN03098 LPA1 LOW PSII ACCUMUL 93.3 0.81 1.8E-05 45.8 10.7 64 160-223 72-141 (453)
206 smart00299 CLH Clathrin heavy 93.3 4.2 9.1E-05 34.0 14.7 122 167-308 11-136 (140)
207 PRK10803 tol-pal system protei 93.0 1.2 2.5E-05 42.1 10.9 94 96-189 144-243 (263)
208 PF13170 DUF4003: Protein of u 92.8 6.3 0.00014 37.8 15.7 65 210-274 78-150 (297)
209 PF10300 DUF3808: Protein of u 92.8 6.1 0.00013 40.7 16.7 157 134-291 194-373 (468)
210 PF13371 TPR_9: Tetratricopept 92.5 0.81 1.7E-05 33.2 7.4 52 204-256 5-56 (73)
211 PF10300 DUF3808: Protein of u 92.3 5.4 0.00012 41.1 15.6 164 144-313 173-356 (468)
212 PF13371 TPR_9: Tetratricopept 92.3 0.75 1.6E-05 33.4 7.0 53 171-223 3-58 (73)
213 COG4235 Cytochrome c biogenesi 91.9 2.1 4.5E-05 40.4 10.8 110 193-305 155-268 (287)
214 KOG2280 Vacuolar assembly/sort 91.8 18 0.00039 38.6 18.1 103 197-316 687-789 (829)
215 COG3898 Uncharacterized membra 91.6 15 0.00032 36.2 23.0 215 107-333 132-365 (531)
216 COG3898 Uncharacterized membra 91.1 17 0.00036 35.9 19.5 227 98-332 85-330 (531)
217 PF04053 Coatomer_WDAD: Coatom 91.1 4.9 0.00011 41.0 13.4 158 105-293 271-430 (443)
218 COG3629 DnrI DNA-binding trans 90.8 2.4 5.2E-05 40.0 10.1 76 163-238 153-236 (280)
219 KOG0624 dsRNA-activated protei 90.7 17 0.00036 35.2 21.8 192 100-299 43-258 (504)
220 PF09205 DUF1955: Domain of un 90.5 8.9 0.00019 31.7 13.2 64 197-262 89-152 (161)
221 COG4235 Cytochrome c biogenesi 90.4 4.3 9.4E-05 38.3 11.3 96 127-223 155-256 (287)
222 KOG0548 Molecular co-chaperone 90.2 24 0.00051 36.1 17.2 220 98-330 227-459 (539)
223 PF07079 DUF1347: Protein of u 89.2 7.2 0.00016 39.0 12.1 134 105-241 16-179 (549)
224 PRK10866 outer membrane biogen 89.1 19 0.00041 33.4 19.5 57 235-291 181-238 (243)
225 COG0457 NrfG FOG: TPR repeat [ 88.6 16 0.00034 31.8 23.9 217 108-328 36-267 (291)
226 KOG4570 Uncharacterized conser 88.4 4.2 9E-05 38.7 9.5 101 157-258 58-164 (418)
227 KOG4162 Predicted calmodulin-b 88.1 41 0.00089 36.1 23.3 130 196-330 652-787 (799)
228 PF04053 Coatomer_WDAD: Coatom 87.6 14 0.00029 37.8 13.6 132 96-254 296-427 (443)
229 PF13176 TPR_7: Tetratricopept 87.5 1.3 2.9E-05 27.3 4.1 25 196-220 1-25 (36)
230 KOG1538 Uncharacterized conser 87.4 9.8 0.00021 39.8 12.2 84 196-291 749-843 (1081)
231 PF10602 RPN7: 26S proteasome 86.9 7.3 0.00016 34.3 10.0 94 196-291 38-139 (177)
232 COG0457 NrfG FOG: TPR repeat [ 86.7 20 0.00044 31.1 22.9 199 94-296 58-268 (291)
233 PF09613 HrpB1_HrpK: Bacterial 86.7 13 0.00028 31.9 10.8 47 175-223 22-73 (160)
234 PF10602 RPN7: 26S proteasome 86.6 12 0.00025 33.0 11.1 94 164-257 37-141 (177)
235 COG4105 ComL DNA uptake lipopr 86.1 29 0.00062 32.3 16.6 61 270-330 172-237 (254)
236 COG1729 Uncharacterized protei 85.6 10 0.00023 35.3 10.5 95 196-291 144-241 (262)
237 PF02284 COX5A: Cytochrome c o 85.5 6.8 0.00015 30.7 7.7 60 212-273 28-87 (108)
238 KOG2280 Vacuolar assembly/sort 85.4 8.6 0.00019 40.8 10.8 110 165-290 686-795 (829)
239 PF13512 TPR_18: Tetratricopep 85.3 7.6 0.00016 32.6 8.7 47 176-222 23-75 (142)
240 KOG0543 FKBP-type peptidyl-pro 85.1 14 0.00029 36.6 11.5 85 171-256 216-318 (397)
241 PF07079 DUF1347: Protein of u 84.9 11 0.00024 37.8 10.7 142 139-281 17-183 (549)
242 PF13762 MNE1: Mitochondrial s 84.7 20 0.00044 30.2 11.0 89 154-242 28-128 (145)
243 cd00923 Cyt_c_Oxidase_Va Cytoc 84.7 7.2 0.00016 30.3 7.4 62 210-273 23-84 (103)
244 PF04184 ST7: ST7 protein; In 84.5 24 0.00053 35.9 13.1 78 234-311 264-345 (539)
245 COG3629 DnrI DNA-binding trans 84.5 11 0.00024 35.7 10.3 60 196-256 155-214 (280)
246 PF08631 SPO22: Meiosis protei 84.4 38 0.00082 32.1 21.2 192 96-289 37-270 (278)
247 COG4700 Uncharacterized protei 84.2 29 0.00063 30.7 16.1 120 192-316 87-212 (251)
248 PF13525 YfiO: Outer membrane 83.8 32 0.00069 30.8 18.7 53 104-156 14-70 (203)
249 PF04184 ST7: ST7 protein; In 83.7 45 0.00097 34.1 14.6 162 97-272 171-338 (539)
250 PF00637 Clathrin: Region in C 83.6 0.3 6.5E-06 41.2 -0.4 83 134-219 13-95 (143)
251 TIGR02561 HrpB1_HrpK type III 83.0 22 0.00048 30.1 10.3 33 175-207 56-89 (153)
252 PRK11906 transcriptional regul 82.9 56 0.0012 33.2 15.0 75 144-219 320-397 (458)
253 PRK15331 chaperone protein Sic 82.7 6.3 0.00014 34.0 7.3 82 140-222 49-133 (165)
254 KOG2041 WD40 repeat protein [G 82.2 75 0.0016 33.9 16.1 118 90-218 687-820 (1189)
255 PF13176 TPR_7: Tetratricopept 82.0 2.8 6.1E-05 25.8 3.8 25 165-189 1-25 (36)
256 PHA02875 ankyrin repeat protei 82.0 14 0.00031 37.2 11.1 195 102-313 6-215 (413)
257 KOG4570 Uncharacterized conser 82.0 5.3 0.00011 38.0 7.0 97 93-191 62-163 (418)
258 KOG0548 Molecular co-chaperone 81.5 14 0.00031 37.7 10.3 99 104-204 11-114 (539)
259 PF13428 TPR_14: Tetratricopep 81.1 2.4 5.1E-05 27.5 3.3 33 97-129 3-35 (44)
260 PF13428 TPR_14: Tetratricopep 80.9 3.6 7.8E-05 26.6 4.2 28 196-223 3-30 (44)
261 PF09205 DUF1955: Domain of un 80.9 23 0.00049 29.4 9.4 61 166-226 89-152 (161)
262 PF13374 TPR_10: Tetratricopep 80.8 4.1 8.8E-05 25.5 4.4 27 195-221 3-29 (42)
263 KOG4555 TPR repeat-containing 80.6 18 0.00039 30.0 8.7 86 104-189 52-141 (175)
264 KOG4555 TPR repeat-containing 79.9 33 0.00073 28.4 10.7 50 172-221 52-104 (175)
265 TIGR02561 HrpB1_HrpK type III 78.6 21 0.00045 30.2 8.8 73 165-242 9-89 (153)
266 TIGR02508 type_III_yscG type I 78.2 30 0.00065 27.1 8.8 52 171-224 47-98 (115)
267 COG4649 Uncharacterized protei 77.2 45 0.00097 29.2 10.5 117 174-291 69-193 (221)
268 PF00637 Clathrin: Region in C 77.2 1.2 2.6E-05 37.4 1.3 48 203-250 16-63 (143)
269 PF00515 TPR_1: Tetratricopept 76.7 6.5 0.00014 23.4 4.2 27 196-222 3-29 (34)
270 KOG1920 IkappaB kinase complex 76.4 1E+02 0.0022 35.0 15.5 54 236-291 972-1025(1265)
271 PF07035 Mic1: Colon cancer-as 76.3 51 0.0011 28.6 15.0 121 193-325 28-148 (167)
272 PF09613 HrpB1_HrpK: Bacterial 76.2 50 0.0011 28.4 11.9 90 138-231 20-114 (160)
273 PF13512 TPR_18: Tetratricopep 75.9 26 0.00057 29.4 8.8 51 206-256 22-74 (142)
274 KOG1130 Predicted G-alpha GTPa 74.9 15 0.00033 36.3 8.0 57 97-153 17-80 (639)
275 KOG0543 FKBP-type peptidyl-pro 73.6 42 0.00092 33.2 10.8 94 163-258 257-355 (397)
276 PF10366 Vps39_1: Vacuolar sor 73.4 16 0.00034 29.2 6.7 27 196-222 41-67 (108)
277 KOG2610 Uncharacterized conser 73.0 71 0.0015 31.0 11.7 93 127-219 136-234 (491)
278 PF13762 MNE1: Mitochondrial s 72.9 37 0.00079 28.7 8.9 78 98-175 42-127 (145)
279 PF13374 TPR_10: Tetratricopep 72.9 7.9 0.00017 24.1 4.1 28 163-190 2-29 (42)
280 PRK15331 chaperone protein Sic 72.8 32 0.00069 29.7 8.7 83 174-257 48-133 (165)
281 KOG0403 Neoplastic transformat 72.7 96 0.0021 31.3 12.8 67 268-337 512-581 (645)
282 PF00515 TPR_1: Tetratricopept 71.4 6.5 0.00014 23.4 3.2 31 96-126 2-32 (34)
283 TIGR02508 type_III_yscG type I 70.3 36 0.00078 26.7 7.5 48 203-256 48-95 (115)
284 KOG2114 Vacuolar assembly/sort 70.3 84 0.0018 34.3 12.7 111 99-218 338-455 (933)
285 KOG0550 Molecular chaperone (D 69.3 49 0.0011 33.0 10.0 145 105-256 179-348 (486)
286 COG1729 Uncharacterized protei 69.2 35 0.00076 31.9 8.8 94 97-191 144-243 (262)
287 PF13431 TPR_17: Tetratricopep 69.0 7.5 0.00016 23.6 3.1 21 162-182 12-32 (34)
288 PF11207 DUF2989: Protein of u 69.0 41 0.00089 30.1 8.8 74 139-214 118-198 (203)
289 PF02284 COX5A: Cytochrome c o 68.9 21 0.00045 28.1 6.0 45 146-190 28-72 (108)
290 PF04097 Nic96: Nup93/Nic96; 68.1 1E+02 0.0022 33.0 13.4 86 103-191 266-355 (613)
291 COG3118 Thioredoxin domain-con 67.8 1.2E+02 0.0025 29.0 16.4 135 137-276 143-283 (304)
292 PF11768 DUF3312: Protein of u 67.8 67 0.0014 33.3 11.1 128 166-317 411-543 (545)
293 COG4455 ImpE Protein of avirul 67.4 25 0.00055 31.8 7.1 53 100-152 6-59 (273)
294 PF07719 TPR_2: Tetratricopept 66.8 13 0.00028 21.9 3.9 27 196-222 3-29 (34)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 66.8 32 0.00069 26.8 6.6 47 144-190 23-69 (103)
296 PF07721 TPR_4: Tetratricopept 66.2 13 0.00029 20.8 3.6 20 168-187 6-25 (26)
297 PF13525 YfiO: Outer membrane 65.7 1E+02 0.0022 27.6 18.6 165 138-316 15-197 (203)
298 PF09477 Type_III_YscG: Bacter 65.5 68 0.0015 25.5 8.4 79 143-224 21-99 (116)
299 COG3118 Thioredoxin domain-con 65.3 1.3E+02 0.0028 28.7 13.5 137 172-313 143-288 (304)
300 PF13281 DUF4071: Domain of un 64.8 1.5E+02 0.0033 29.4 18.0 156 134-291 147-331 (374)
301 KOG1941 Acetylcholine receptor 64.2 1.5E+02 0.0033 29.2 12.4 195 96-290 44-271 (518)
302 KOG1585 Protein required for f 64.0 1.2E+02 0.0027 28.1 14.4 200 98-319 34-249 (308)
303 PF07035 Mic1: Colon cancer-as 64.0 98 0.0021 26.9 14.1 121 126-256 27-147 (167)
304 PF14689 SPOB_a: Sensor_kinase 63.5 17 0.00038 25.6 4.5 44 179-222 6-51 (62)
305 PF11846 DUF3366: Domain of un 63.2 25 0.00053 31.2 6.6 51 241-291 120-170 (193)
306 COG2178 Predicted RNA-binding 63.1 1.1E+02 0.0024 27.2 11.1 62 166-228 32-102 (204)
307 KOG0276 Vesicle coat complex C 62.9 1.4E+02 0.0029 31.6 12.1 165 93-292 579-748 (794)
308 KOG4077 Cytochrome c oxidase, 61.2 82 0.0018 25.9 8.3 71 212-293 67-137 (149)
309 PF11207 DUF2989: Protein of u 60.9 82 0.0018 28.2 9.1 74 211-285 123-198 (203)
310 KOG4648 Uncharacterized conser 59.9 23 0.0005 34.3 5.8 77 104-188 106-183 (536)
311 PF13934 ELYS: Nuclear pore co 59.0 1.5E+02 0.0032 27.2 11.6 70 235-308 114-183 (226)
312 PF07719 TPR_2: Tetratricopept 58.9 16 0.00034 21.5 3.2 26 98-123 4-29 (34)
313 PRK09687 putative lyase; Provi 57.6 1.8E+02 0.0038 27.7 23.8 223 91-329 33-266 (280)
314 PRK10564 maltose regulon perip 57.2 21 0.00045 34.0 5.1 45 192-236 254-299 (303)
315 TIGR03504 FimV_Cterm FimV C-te 56.6 21 0.00045 23.3 3.6 25 200-224 5-29 (44)
316 cd08819 CARD_MDA5_2 Caspase ac 56.1 82 0.0018 24.0 7.1 66 148-215 22-87 (88)
317 PF07163 Pex26: Pex26 protein; 55.4 1.3E+02 0.0029 28.4 9.8 87 201-290 90-183 (309)
318 PF13929 mRNA_stabil: mRNA sta 54.6 2E+02 0.0043 27.4 18.9 115 197-314 134-255 (292)
319 PF13929 mRNA_stabil: mRNA sta 54.5 2E+02 0.0043 27.4 14.7 114 177-290 142-263 (292)
320 PF11848 DUF3368: Domain of un 54.1 50 0.0011 21.9 5.2 31 206-236 14-44 (48)
321 PF04762 IKI3: IKI3 family; I 54.1 3.8E+02 0.0082 30.5 15.9 122 100-223 699-843 (928)
322 PF11846 DUF3366: Domain of un 53.5 66 0.0014 28.5 7.7 31 160-190 141-171 (193)
323 PF13181 TPR_8: Tetratricopept 53.2 37 0.00079 19.9 4.2 26 196-221 3-28 (34)
324 COG4455 ImpE Protein of avirul 53.1 73 0.0016 29.0 7.4 77 196-274 3-81 (273)
325 COG2178 Predicted RNA-binding 52.7 90 0.0019 27.8 7.8 72 112-190 20-96 (204)
326 PF11848 DUF3368: Domain of un 52.6 48 0.001 22.0 4.9 34 138-171 12-45 (48)
327 cd08326 CARD_CASP9 Caspase act 52.2 91 0.002 23.6 7.0 62 148-213 19-80 (84)
328 KOG2114 Vacuolar assembly/sort 51.5 3.7E+02 0.008 29.6 17.7 115 131-253 337-455 (933)
329 PF04034 DUF367: Domain of unk 51.3 92 0.002 25.6 7.2 57 266-322 67-124 (127)
330 PF10579 Rapsyn_N: Rapsyn N-te 51.1 44 0.00095 24.9 4.9 47 241-287 18-65 (80)
331 PF11663 Toxin_YhaV: Toxin wit 51.1 17 0.00036 30.2 2.9 32 206-239 107-138 (140)
332 KOG0276 Vesicle coat complex C 49.8 2E+02 0.0044 30.3 10.9 130 164-326 615-747 (794)
333 PF13174 TPR_6: Tetratricopept 49.1 19 0.00041 20.9 2.4 22 201-222 7-28 (33)
334 KOG2066 Vacuolar assembly/sort 48.8 4E+02 0.0086 29.2 16.1 89 211-311 611-704 (846)
335 KOG1585 Protein required for f 48.4 2.3E+02 0.0051 26.4 12.4 147 131-289 94-251 (308)
336 PHA03100 ankyrin repeat protei 48.1 1.9E+02 0.004 29.6 11.1 19 169-187 144-164 (480)
337 PHA02875 ankyrin repeat protei 47.7 2E+02 0.0044 28.7 11.1 17 369-385 296-312 (413)
338 PRK10564 maltose regulon perip 47.1 43 0.00092 32.0 5.4 41 126-166 254-295 (303)
339 KOG0687 26S proteasome regulat 46.8 2.8E+02 0.0062 26.9 13.9 93 196-291 106-207 (393)
340 PF07163 Pex26: Pex26 protein; 46.4 2.2E+02 0.0047 27.1 9.7 17 370-386 285-301 (309)
341 cd08332 CARD_CASP2 Caspase act 46.0 1.2E+02 0.0026 23.2 6.9 62 148-213 23-84 (90)
342 KOG1920 IkappaB kinase complex 45.9 5.2E+02 0.011 29.8 19.5 186 98-313 793-1015(1265)
343 KOG1550 Extracellular protein 45.6 3.9E+02 0.0085 28.2 13.8 147 138-291 259-423 (552)
344 PF08311 Mad3_BUB1_I: Mad3/BUB 45.5 1.7E+02 0.0037 24.0 9.6 43 146-188 81-124 (126)
345 COG3947 Response regulator con 45.2 1.2E+02 0.0025 29.1 7.7 60 130-190 281-340 (361)
346 KOG4648 Uncharacterized conser 45.0 51 0.0011 32.0 5.6 85 202-297 105-198 (536)
347 KOG0687 26S proteasome regulat 43.0 3.3E+02 0.0071 26.5 10.7 62 231-292 106-175 (393)
348 PF14689 SPOB_a: Sensor_kinase 42.8 34 0.00073 24.1 3.2 23 269-291 27-49 (62)
349 COG5108 RPO41 Mitochondrial DN 42.5 1E+02 0.0022 32.8 7.6 73 199-275 33-113 (1117)
350 PRK15180 Vi polysaccharide bio 42.2 1.8E+02 0.0038 29.8 8.9 113 141-256 302-418 (831)
351 smart00028 TPR Tetratricopepti 42.0 43 0.00093 18.1 3.3 27 97-123 3-29 (34)
352 cd00280 TRFH Telomeric Repeat 41.9 1.1E+02 0.0025 27.0 6.7 68 245-312 85-158 (200)
353 cd08819 CARD_MDA5_2 Caspase ac 41.3 1.1E+02 0.0023 23.4 5.7 67 213-286 21-87 (88)
354 KOG0550 Molecular chaperone (D 41.3 3.9E+02 0.0084 27.0 12.5 159 126-291 166-347 (486)
355 PF10366 Vps39_1: Vacuolar sor 39.4 1.9E+02 0.0042 22.9 8.2 26 166-191 42-67 (108)
356 COG1747 Uncharacterized N-term 39.4 4.6E+02 0.01 27.3 17.8 159 93-256 64-232 (711)
357 KOG3807 Predicted membrane pro 39.3 1.9E+02 0.0042 28.0 8.4 104 140-256 228-338 (556)
358 PF11838 ERAP1_C: ERAP1-like C 39.2 3.5E+02 0.0076 25.8 15.5 79 245-323 146-227 (324)
359 PF10579 Rapsyn_N: Rapsyn N-te 38.9 99 0.0021 23.1 5.1 46 206-251 18-65 (80)
360 PF02607 B12-binding_2: B12 bi 38.4 71 0.0015 23.4 4.6 40 205-244 12-51 (79)
361 PF13934 ELYS: Nuclear pore co 38.1 3.2E+02 0.0069 25.0 11.3 121 166-296 79-203 (226)
362 KOG1586 Protein required for f 37.8 3.4E+02 0.0073 25.2 16.0 54 276-329 165-227 (288)
363 COG4649 Uncharacterized protei 37.8 2.9E+02 0.0062 24.4 13.1 128 130-258 61-196 (221)
364 PF07218 RAP1: Rhoptry-associa 37.4 3E+02 0.0065 28.6 9.8 114 127-258 619-758 (782)
365 TIGR03504 FimV_Cterm FimV C-te 37.2 58 0.0013 21.2 3.4 25 134-158 5-29 (44)
366 KOG1130 Predicted G-alpha GTPa 35.7 1.3E+02 0.0029 30.1 6.9 126 130-255 197-341 (639)
367 COG2976 Uncharacterized protei 35.6 3.3E+02 0.0071 24.4 10.7 126 129-258 55-188 (207)
368 KOG2297 Predicted translation 35.2 4.2E+02 0.0091 25.6 12.6 20 296-315 320-339 (412)
369 PF11768 DUF3312: Protein of u 35.1 5.2E+02 0.011 27.1 11.3 25 99-123 412-436 (545)
370 PRK11906 transcriptional regul 34.8 5.2E+02 0.011 26.5 16.7 156 129-290 252-432 (458)
371 COG4105 ComL DNA uptake lipopr 33.5 4E+02 0.0088 24.9 18.8 80 93-174 33-117 (254)
372 PF12796 Ank_2: Ankyrin repeat 33.0 1.2E+02 0.0026 22.4 5.3 19 169-187 29-47 (89)
373 KOG2908 26S proteasome regulat 33.0 3.8E+02 0.0082 26.2 9.3 56 101-156 81-143 (380)
374 PF14669 Asp_Glu_race_2: Putat 32.7 1.1E+02 0.0025 27.1 5.4 56 133-188 137-206 (233)
375 cd04449 DEP_DEPDC5-like DEP (D 31.5 23 0.0005 26.7 0.9 32 437-469 48-79 (83)
376 cd08323 CARD_APAF1 Caspase act 30.6 2.4E+02 0.0052 21.4 6.6 64 147-214 16-79 (86)
377 KOG2396 HAT (Half-A-TPR) repea 30.5 3.6E+02 0.0077 27.9 9.1 94 160-256 456-557 (568)
378 PRK02287 hypothetical protein; 29.7 3E+02 0.0064 24.0 7.4 58 266-323 108-166 (171)
379 KOG2659 LisH motif-containing 29.6 4.4E+02 0.0096 24.1 9.0 91 196-290 28-128 (228)
380 PF02847 MA3: MA3 domain; Int 28.9 1.2E+02 0.0027 23.8 4.9 24 169-192 8-31 (113)
381 PRK14958 DNA polymerase III su 28.8 6.8E+02 0.015 26.1 11.4 75 152-229 189-280 (509)
382 PF11663 Toxin_YhaV: Toxin wit 28.3 1.2E+02 0.0026 25.2 4.6 23 366-388 108-130 (140)
383 PF02847 MA3: MA3 domain; Int 28.2 1.6E+02 0.0035 23.1 5.5 22 133-154 7-28 (113)
384 COG5108 RPO41 Mitochondrial DN 28.1 2.9E+02 0.0064 29.6 8.2 73 100-175 33-115 (1117)
385 PF14853 Fis1_TPR_C: Fis1 C-te 27.8 2E+02 0.0043 19.5 4.9 30 202-233 9-38 (53)
386 PF02259 FAT: FAT domain; Int 27.8 5.5E+02 0.012 24.6 17.4 63 228-291 145-210 (352)
387 KOG4279 Serine/threonine prote 27.6 1.9E+02 0.0042 31.3 6.9 171 147-330 182-399 (1226)
388 cd04441 DEP_2_DEP6 DEP (Dishev 27.4 31 0.00068 26.2 1.0 40 428-468 38-80 (85)
389 COG1747 Uncharacterized N-term 27.3 7.3E+02 0.016 25.9 19.1 176 126-307 64-249 (711)
390 PF09454 Vps23_core: Vps23 cor 27.2 1.8E+02 0.0039 20.8 4.8 33 193-225 7-39 (65)
391 cd04440 DEP_2_P-Rex DEP (Dishe 26.8 37 0.0008 26.3 1.3 40 428-468 43-85 (93)
392 PF10475 DUF2450: Protein of u 26.7 4.9E+02 0.011 24.7 9.4 112 166-289 101-221 (291)
393 KOG1941 Acetylcholine receptor 26.5 6.5E+02 0.014 25.0 11.9 18 267-284 164-181 (518)
394 KOG4077 Cytochrome c oxidase, 26.5 2.1E+02 0.0045 23.7 5.5 43 148-190 69-111 (149)
395 PF11817 Foie-gras_1: Foie gra 26.5 4E+02 0.0086 24.6 8.5 51 237-287 186-240 (247)
396 KOG2396 HAT (Half-A-TPR) repea 26.4 5.6E+02 0.012 26.6 9.6 30 193-222 104-133 (568)
397 PF09868 DUF2095: Uncharacteri 26.1 1E+02 0.0022 24.7 3.6 50 157-225 61-110 (128)
398 KOG0403 Neoplastic transformat 26.0 2.8E+02 0.006 28.2 7.3 77 198-280 513-589 (645)
399 PF09454 Vps23_core: Vps23 cor 25.9 2.1E+02 0.0045 20.4 4.9 49 126-175 6-54 (65)
400 PRK09687 putative lyase; Provi 25.7 5.8E+02 0.013 24.2 26.4 203 93-306 66-276 (280)
401 PF10475 DUF2450: Protein of u 25.4 4.7E+02 0.01 24.9 9.0 107 198-313 102-213 (291)
402 PF11123 DNA_Packaging_2: DNA 25.3 2.2E+02 0.0048 20.9 4.8 33 143-176 12-44 (82)
403 PF09868 DUF2095: Uncharacteri 25.2 2.5E+02 0.0055 22.6 5.6 39 134-173 67-105 (128)
404 KOG4234 TPR repeat-containing 25.1 4.1E+02 0.0088 24.1 7.5 85 138-223 105-197 (271)
405 COG2976 Uncharacterized protei 25.0 5.1E+02 0.011 23.3 8.7 124 96-224 55-189 (207)
406 PF12926 MOZART2: Mitotic-spin 24.3 3.3E+02 0.007 20.8 7.9 62 127-190 9-70 (88)
407 TIGR02270 conserved hypothetic 24.2 7.6E+02 0.016 25.0 22.5 102 101-208 44-145 (410)
408 COG3947 Response regulator con 24.1 6.5E+02 0.014 24.2 15.8 41 145-187 150-190 (361)
409 KOG2034 Vacuolar sorting prote 23.8 1E+03 0.023 26.5 15.1 165 104-291 367-556 (911)
410 PF02184 HAT: HAT (Half-A-TPR) 23.5 48 0.001 20.0 1.1 22 280-301 2-24 (32)
411 KOG2908 26S proteasome regulat 23.4 7.1E+02 0.015 24.4 9.4 80 168-247 80-175 (380)
412 COG4003 Uncharacterized protei 23.3 2.4E+02 0.0053 21.1 4.9 24 135-158 38-61 (98)
413 PRK10292 hypothetical protein; 23.0 2.8E+02 0.0062 19.7 4.9 37 219-255 24-60 (69)
414 cd07153 Fur_like Ferric uptake 23.0 2E+02 0.0043 22.7 5.1 36 208-243 14-49 (116)
415 PRK15180 Vi polysaccharide bio 22.9 7E+02 0.015 25.8 9.5 121 204-329 299-423 (831)
416 COG5431 Uncharacterized metal- 22.9 39 0.00083 26.4 0.7 20 454-474 38-57 (117)
417 TIGR03581 EF_0839 conserved hy 22.9 2.7E+02 0.0059 25.3 6.0 80 111-190 137-235 (236)
418 smart00386 HAT HAT (Half-A-TPR 22.7 1.2E+02 0.0027 16.9 2.9 12 280-291 2-13 (33)
419 cd00280 TRFH Telomeric Repeat 22.3 5.6E+02 0.012 22.8 7.9 12 179-190 85-96 (200)
420 PRK13342 recombination factor 21.6 8.3E+02 0.018 24.5 14.0 24 208-231 244-267 (413)
421 PRK11639 zinc uptake transcrip 21.4 3.9E+02 0.0085 23.1 6.9 62 220-283 17-78 (169)
422 KOG1550 Extracellular protein 21.2 9.8E+02 0.021 25.2 15.9 146 143-291 227-390 (552)
423 KOG0890 Protein kinase of the 21.2 1.2E+03 0.025 29.5 12.2 115 168-291 1388-1509(2382)
424 PF11838 ERAP1_C: ERAP1-like C 21.2 7.1E+02 0.015 23.6 20.5 78 210-291 146-227 (324)
425 PRK08691 DNA polymerase III su 21.1 8.7E+02 0.019 26.6 10.5 81 145-228 181-279 (709)
426 PRK00423 tfb transcription ini 20.8 7.6E+02 0.016 23.8 10.5 32 282-313 238-276 (310)
427 PF07443 HARP: HepA-related pr 20.8 61 0.0013 22.3 1.3 32 369-400 8-39 (55)
428 PHA02878 ankyrin repeat protei 20.6 9.2E+02 0.02 24.6 11.6 168 103-288 42-221 (477)
429 cd07229 Pat_TGL3_like Triacylg 20.4 3.7E+02 0.0079 27.0 7.2 147 149-313 100-253 (391)
430 PF08631 SPO22: Meiosis protei 20.1 7.3E+02 0.016 23.3 25.5 149 106-256 4-184 (278)
431 PF07218 RAP1: Rhoptry-associa 20.1 1E+03 0.022 25.0 10.2 58 178-241 595-661 (782)
432 PF11817 Foie-gras_1: Foie gra 20.0 4.5E+02 0.0097 24.3 7.5 50 171-220 186-244 (247)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.7e-74 Score=615.75 Aligned_cols=391 Identities=34% Similarity=0.582 Sum_probs=370.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038373 85 TNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD 162 (475)
Q Consensus 85 ~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 162 (475)
.++.....+|+++||+||.+|++.|++++|+++|++|...+ ||.+||+++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 280 ~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 33344457899999999999999999999999999997655 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA 242 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~ 242 (475)
..+||+||++|+|+|++++|.++|++|.+||++|||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373 243 EAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEEL 322 (475)
Q Consensus 243 g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 322 (475)
|++++|.++|+.|.+++|+.|+..+|++||++|++.|++++|.++|++|++.||..+|++||.+|+++|+++.|+++.+.
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 99999999999999778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCChh---------------------hhccCCCCCcccccceeEEecCeEEEEEccCcc---chH-HHHHHHHHH
Q 038373 323 LGDLDPSKAI---------------------VDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLY---RGE-YEKMKGLNG 377 (475)
Q Consensus 323 l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~a~~l~~ 377 (475)
+.++.|++.. .+.|...+..+.++++|++..+.++.|..++.. ..+ ++++.++..
T Consensus 520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 599 (697)
T PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMK 599 (697)
T ss_pred HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHH
Confidence 9999987531 246777888899999999999999999988633 333 788899999
Q ss_pred HHHHcCcccCCccccccccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCceEEEec
Q 038373 378 QMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRD 457 (475)
Q Consensus 378 ~M~~~G~~Pd~~t~~~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d 457 (475)
+|++.|+.||.......+++..++..+..|+|++|++||++.++++.+++|++|++.|||||.|.|+++++.+|+||+||
T Consensus 600 ~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd 679 (697)
T PLN03081 600 EISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRD 679 (697)
T ss_pred HHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEec
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCcCCCCCCC
Q 038373 458 NKRFHHFRDGKCSCGDYW 475 (475)
Q Consensus 458 ~~~~~~~~~g~cs~~~~~ 475 (475)
..|||||++|.|||||||
T Consensus 680 ~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 680 ASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCccccCCCCcccccccC
Confidence 999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-67 Score=578.62 Aligned_cols=397 Identities=31% Similarity=0.559 Sum_probs=366.8
Q ss_pred CCCCCccccccCCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 038373 75 PKTGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDAS-ASAGYDVFSSLLDSCGNLKSIEMGKRVHEL 153 (475)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 153 (475)
.+.|..+.+...+.....+|+++||+||.+|++.|+.++|+++|++|.. ..||.+||+++|.+|++.|+++.+.++|..
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 3344444444444445568999999999999999999999999999875 349999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 154 LRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL 233 (475)
Q Consensus 154 m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 233 (475)
|.+.|+.+|..++|+||++|+|+|++++|.++|++| .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 038373 234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~ 313 (475)
++|.+|++.|++++|.++|+.|.+++|+.||..+|++||++|++.|++++|.+++++|+++||..+|++|+.+|..+|++
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999778999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCChhh---------------------hccCCCCCcccccceeEEecCeEEEEEccCcc---chH-
Q 038373 314 ELEDRAEELLGDLDPSKAIV---------------------DKIPLPPRKKQSATNMLEEKNRVSDYRSTDLY---RGE- 368 (475)
Q Consensus 314 ~~a~~~~~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~- 368 (475)
+.++.+.+.+.+++|++... ..|...++++.++++|++.++.+|.|..++.. ..+
T Consensus 674 e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i 753 (857)
T PLN03077 674 ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEI 753 (857)
T ss_pred HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHH
Confidence 99999999999999987532 45678889999999999999999999988743 344
Q ss_pred HHHHHHHHHHHHHcCcccCCccccccccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhh
Q 038373 369 YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKI 448 (475)
Q Consensus 369 ~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m 448 (475)
++...+|..+|++.|+.||+.... ..++..++..+..|+|++|++||++.++++.+++|++|++.|||||.|.|+++++
T Consensus 754 ~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~ 832 (857)
T PLN03077 754 NTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKI 832 (857)
T ss_pred HHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHH
Confidence 777888999999999999987655 4467788999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEecCCccccccCCcCCCCC
Q 038373 449 VGRELIVRDNKRFHHFRDGKCSCGD 473 (475)
Q Consensus 449 ~~~~i~~~d~~~~~~~~~g~cs~~~ 473 (475)
.+|+||+||..|||||++|.|||||
T Consensus 833 ~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 833 VRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred hCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999998
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-53 Score=454.17 Aligned_cols=374 Identities=19% Similarity=0.232 Sum_probs=269.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 90 RGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN 167 (475)
Q Consensus 90 ~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 167 (475)
...||+++||+||.+|++.|++++|+++|++|...+ ||..||+.+|.+|++.|.++.+.+++..|.+.|+.||..+||
T Consensus 184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n 263 (697)
T PLN03081 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263 (697)
T ss_pred CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH
Confidence 345666666666666666666666666666665433 666666666666666666666666666667777778888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373 168 KLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE 247 (475)
Q Consensus 168 ~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~ 247 (475)
+||++|+|+|++++|.++|++|.++|+++||+||.+|+++|++++|+++|++|.+.|+.||.+||+++|.+|++.|++++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~ 343 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEH 343 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD 327 (475)
Q Consensus 248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~ 327 (475)
|.++|..|.+ .|+.||..+||+||++|+++|++++|.++|++|. +||++|||+||.+|+++|+.++|.+.++.|.+
T Consensus 344 a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-- 419 (697)
T PLN03081 344 AKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIA-- 419 (697)
T ss_pred HHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 9999999995 5999999999999999999999999999999997 68999999999999999999666666555543
Q ss_pred CCChhhhccCCCCCc---------cc---ccceeEEec------CeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCc
Q 038373 328 PSKAIVDKIPLPPRK---------KQ---SATNMLEEK------NRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTR 389 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~---------~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~ 389 (475)
.+..|+..++..+. .. .+..+.... ..+...+...++.|++++|.+++++| ++.||..
T Consensus 420 -~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~ 495 (697)
T PLN03081 420 -EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN 495 (697)
T ss_pred -hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH
Confidence 34434333211000 00 000000000 00111122223344444444444332 3445555
Q ss_pred cccccccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCceE--------EEecCCcc
Q 038373 390 YVLHDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGREL--------IVRDNKRF 461 (475)
Q Consensus 390 t~~~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i--------~~~d~~~~ 461 (475)
+|.+++.+|...+.+....+.....+++.+.....++.+++.|+++|+.++|.+++++|.++|+ +.-+. ..
T Consensus 496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~-~~ 574 (697)
T PLN03081 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK-QD 574 (697)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC-eE
Confidence 5555555554444433322222233444443345677899999999999999999999999975 33344 34
Q ss_pred ccccCCcCCCC
Q 038373 462 HHFRDGKCSCG 472 (475)
Q Consensus 462 ~~~~~g~cs~~ 472 (475)
|.|..|+.+..
T Consensus 575 ~~f~~~d~~h~ 585 (697)
T PLN03081 575 HSFFSGDRLHP 585 (697)
T ss_pred EEEccCCCCCc
Confidence 88988876653
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-52 Score=456.84 Aligned_cols=383 Identities=19% Similarity=0.218 Sum_probs=314.4
Q ss_pred CCCccccccCCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 038373 77 TGTGHSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELL 154 (475)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 154 (475)
.|..+.+..++.....||+++||+||.+|++.|++++|+++|++|...+ ||.+||+++|.+|++.|+++.|.++|.+|
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444444444455567999999999999999999999999999998755 99999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 155 RTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLV 234 (475)
Q Consensus 155 ~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ 234 (475)
.+.|+.||..+||+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||.+||++
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCch
Q 038373 235 VFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVE 314 (475)
Q Consensus 235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~ 314 (475)
+|.+|++.|++++|.++|+.|.+ .|+.||..+||+||++|+++|++++|.++|++|. ++|+++||+||.+|++.|+.+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHH
Confidence 99999999999999999999995 5999999999999999999999999999999997 689999999999999999997
Q ss_pred HHHHHHHHHhc-cCCCChhhhccC--------------------CCCCccc------------------cc---ceeEEe
Q 038373 315 LEDRAEELLGD-LDPSKAIVDKIP--------------------LPPRKKQ------------------SA---TNMLEE 352 (475)
Q Consensus 315 ~a~~~~~~l~~-~~~~~~~~~~~~--------------------~~~~~~~------------------~~---~~~~~~ 352 (475)
+|.+.++.|.+ +.|+..++..+. ..+.... .+ +..+ .
T Consensus 473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~ 551 (857)
T PLN03077 473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E 551 (857)
T ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C
Confidence 77777666543 334433221110 0000000 00 0000 1
Q ss_pred cCeE--EEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccHHHHHHhhhhhhH---HHHHHhhcccCCCCCchh
Q 038373 353 KNRV--SDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKALQYHSE---RLAIAYGLISTPPRMPLR 427 (475)
Q Consensus 353 ~~~~--~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~~~~l~~~~~---~l~~~~~~~~~~~~~~~~ 427 (475)
.+.+ +..+.+.+.+|+.++|+++|++|.+.|+.||.+||+.+|.+|++.+.+....+ .+...+|+.+.. ..+.+
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~~y~~ 630 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-KHYAC 630 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-HHHHH
Confidence 1111 12223446688999999999999999999999999999999999887754333 344456644443 35569
Q ss_pred eeccccccccccchhHHHhhhcCceEEEecCCccccccCC
Q 038373 428 IIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDG 467 (475)
Q Consensus 428 ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g 467 (475)
+++.|+++|++++|.++|++|+. ..|..+|..+..+
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~----~pd~~~~~aLl~a 666 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPI----TPDPAVWGALLNA 666 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCC----CCCHHHHHHHHHH
Confidence 99999999999999999999973 3344455554443
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-51 Score=446.78 Aligned_cols=358 Identities=19% Similarity=0.198 Sum_probs=264.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.++.+.++.++.+|++.|.+++|+++|+.|.. ||..||+.||++|++.|+++.|.++|++|.+.|+.||..+||+||+
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~ 480 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIS 480 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35666667777777777777777777777766 8888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHhcc----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373 172 MYGKCCNTRLARKVFDQLR----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE 247 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~ 247 (475)
+|+++|++++|.++|++|. .||++|||+||.+|++.|++++|+++|++|.+.|+.||.+||++||.+|++.|++++
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~de 560 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDR 560 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 8888888888888888887 478888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhh-CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 248 GFLYFEIMKND-YGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 248 a~~~~~~m~~~-~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
|.++|++|... .|+.||.++|++||++|+++|++++|.++|++| ++.|+..+||+||.+|++.|++++|.++++.|
T Consensus 561 A~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 561 AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88888888642 478888888888888888888888888888888 67788888888888888888885555555444
Q ss_pred hccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccHHHHHHh
Q 038373 324 GDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKA 403 (475)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~~~~ 403 (475)
. ..+..|+..++. .++.+.++.|++++|.++|++|.+.|+.||..||+.+|+++++.+.
T Consensus 641 ~---~~Gv~PD~~Tyn------------------sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~ 699 (1060)
T PLN03218 641 K---KKGVKPDEVFFS------------------ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699 (1060)
T ss_pred H---HcCCCCCHHHHH------------------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 3 333333322111 1122234466677777777777777777777777777777777666
Q ss_pred hhhhhHHHHHH--hhcccCCCCCchheeccccccccccchhHHHhhhcCceEEEecCCccccccCCcCCCCCC
Q 038373 404 LQYHSERLAIA--YGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGDY 474 (475)
Q Consensus 404 l~~~~~~l~~~--~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g~cs~~~~ 474 (475)
+....+..... .|+.++ ..+.+.+|++|+++|+.++|.++|++|...|+ ..|..+|..++.+.|.+|++
T Consensus 700 ~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi-~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 700 WKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGL-CPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCH
Confidence 54443322221 221111 12345777777777777777777777777774 34555777777777776653
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-51 Score=446.79 Aligned_cols=357 Identities=15% Similarity=0.182 Sum_probs=309.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038373 88 PLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL 165 (475)
Q Consensus 88 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 165 (475)
+....||..+||.||.+|++.|++++|+++|++|...| ||.++|++||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 430 ~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT 509 (1060)
T PLN03218 430 KLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509 (1060)
T ss_pred HHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 33445999999999999999999999999999998766 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHH
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLR----KRNLSSWHLMISGYAANGQGADGLMLFEQMRK--TGPHPDKETFLVVFAAC 239 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~--~g~~pd~~t~~~li~~~ 239 (475)
||+||++|++.|++++|.++|++|. .||.+|||+||.+|++.|++++|+++|++|.. .|+.||.+||++||.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 9999999999999999999999997 48999999999999999999999999999986 68999999999999999
Q ss_pred HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHH
Q 038373 240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELE 316 (475)
Q Consensus 240 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a 316 (475)
++.|++++|.++|+.|.+ .|+.|+..+||+||++|++.|++++|.++|++| |+.||.+||++||.+|++.|++++|
T Consensus 590 ~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999995 599999999999999999999999999999999 8899999999999999999999776
Q ss_pred HHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcccccccc
Q 038373 317 DRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDID 396 (475)
Q Consensus 317 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~ 396 (475)
.++++.+.+ .+..++..+ ++..+.+.++.|++++|.++|++|.+.|+.||.+||+.+|.
T Consensus 669 ~~l~~eM~k---~G~~pd~~t------------------ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 669 FEILQDARK---QGIKLGTVS------------------YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred HHHHHHHHH---cCCCCCHHH------------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 666666554 333222111 11223344668889999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHH--hhcccCCCCCchheeccccccccccchhHHHhhhcCceEEEecCCccccccCCcC
Q 038373 397 EEAKEKALQYHSERLAIA--YGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKC 469 (475)
Q Consensus 397 ~~~~~~~l~~~~~~l~~~--~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g~c 469 (475)
++++.+.+....+.+... .|+.++ ..+...+++.+++.|+.++|.++|.+|.+.|+. .|..+|+.++ |.|
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~-pd~~tynsLI-glc 799 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIK-PNLVMCRCIT-GLC 799 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH-HHH
Confidence 999988776655544432 232222 234568899999999999999999999999854 4555777765 444
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=8.3e-17 Score=161.75 Aligned_cols=274 Identities=12% Similarity=0.012 Sum_probs=206.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC--C---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA--G---YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN 167 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p--~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 167 (475)
.+..+|..+...+.+.|++++|..+++.+....+ + ..++..+...+.+.|++++|..+|..+.+.. ..+..+++
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 145 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ 145 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence 3456788888889999999999999888765331 1 2457788888889999999999999988753 45678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCC--------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 168 KLIEMYGKCCNTRLARKVFDQLRKRN--------LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239 (475)
Q Consensus 168 ~Li~~~~k~g~~~~A~~~f~~m~~~~--------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~ 239 (475)
.++..|.+.|++++|.++|+.+.+.+ ...|..+...+.+.|++++|...|+++.+.. ..+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 99999999999999999999886421 1245677778888999999999999988753 22355777888889
Q ss_pred HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHH
Q 038373 240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDR 318 (475)
Q Consensus 240 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~ 318 (475)
.+.|++++|.++++++.+. +......+++.++..|++.|++++|.+.++++ ...|+...+..+...+.+.|+++.|..
T Consensus 225 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999998843 22222456788899999999999999999988 456777777888888999999988888
Q ss_pred HHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCc
Q 038373 319 AEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTR 389 (475)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~ 389 (475)
.++...+..|+......+... +. .....|+..+++.++++|.+.+++||..
T Consensus 304 ~l~~~l~~~P~~~~~~~l~~~-------------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 304 LLREQLRRHPSLRGFHRLLDY-------------------HL-AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCcCHHHHHHHHHH-------------------hh-hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 877766666655433211100 00 0011456788999999999999998887
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=1.9e-16 Score=159.20 Aligned_cols=267 Identities=14% Similarity=0.070 Sum_probs=213.3
Q ss_pred HHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcC
Q 038373 102 LLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD---VELNNKLIEMYGKCC 177 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~Li~~~~k~g 177 (475)
...+...|++++|+..|.++....|+. .++..+...+...|++++|..+++.+.+.+-.++ ..++..|...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 335678899999999999998877755 4688899999999999999999999988643222 357889999999999
Q ss_pred CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHH
Q 038373 178 NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK----ETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 178 ~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~t~~~li~~~~~~g~~~~a~~ 250 (475)
++++|..+|+++.+ .+..+|+.++..|.+.|++++|.++|++|.+.+..++. ..|..+...+.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999975 46789999999999999999999999999986644432 245667778889999999999
Q ss_pred HHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 251 YFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT--VEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 251 ~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
+++++.+. .| +...+..+...|.+.|++++|.++|+++ ...|+ ..+++.+..+|...|+.+.|...++.+.+.
T Consensus 202 ~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 202 LLKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999842 34 4567888899999999999999999998 33454 456889999999999999888888887777
Q ss_pred CCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcccccccc
Q 038373 327 DPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDID 396 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~ 396 (475)
.|+...... ........|++++|..+++++.+. .||..++..++.
T Consensus 279 ~p~~~~~~~-----------------------la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 279 YPGADLLLA-----------------------LAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred CCCchHHHH-----------------------HHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 665432110 111223367799999999988865 688777765554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.72 E-value=2.4e-15 Score=166.48 Aligned_cols=234 Identities=10% Similarity=0.002 Sum_probs=178.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.+..+++.+...+.+.|+.++|..+|+++....| +...+..+...+.+.|++++|.++++.+.+.. ..+..+|..+..
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 609 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4667888888888888888888888887765443 44557778888888888888888888887654 566778888888
Q ss_pred HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a 248 (475)
+|.+.|++++|...|+.+.+ | +...|..+...|.+.|++++|...|+++.+.. ..+..++..+...+...|++++|
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887753 2 56678888888888888888888888887642 23467788888888888888888
Q ss_pred HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD 327 (475)
Q Consensus 249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~ 327 (475)
.++++.+.+. + ..+...+..+...|.+.|++++|.+.|+++ ...|+..++..+...+.+.|+.++|.+.++.+.+..
T Consensus 689 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 766 (899)
T TIGR02917 689 KKIAKSLQKQ-H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH 766 (899)
T ss_pred HHHHHHHHhh-C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8888888743 2 345666777788888888888888888877 445666777777788888888877777777666666
Q ss_pred CCC
Q 038373 328 PSK 330 (475)
Q Consensus 328 ~~~ 330 (475)
|..
T Consensus 767 ~~~ 769 (899)
T TIGR02917 767 PND 769 (899)
T ss_pred CCC
Confidence 554
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.71 E-value=8.8e-16 Score=169.90 Aligned_cols=373 Identities=13% Similarity=0.039 Sum_probs=251.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
..+...+..+...+.+.|++++|.+.|+++....| +..++..+...+.+.|+.++|..++..+.+.+ ..+...+..+.
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 574 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALA 574 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHH
Confidence 34566788888999999999999999998776554 55678889999999999999999999998775 56778889999
Q ss_pred HHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE 247 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~ 247 (475)
..|.+.|++++|..+++.+.+ .+..+|..+...|.+.|++++|...|+++.+.. ..+...+..+...+.+.|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999873 367899999999999999999999999998753 2356788899999999999999
Q ss_pred HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
|..+++.+.+. ...+..++..+...+.+.|++++|.++++.+ ....+...|..+...+...|+++.|.+.++...+
T Consensus 654 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 654 AITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999998832 2335788999999999999999999999999 2235677888888899999999988888888777
Q ss_pred cCCCChhhhcc----CCCCCccc---ccceeEEec--Ce--EEEEEccCccchHHHHHHHHHHHHHHcCcccCCcc-ccc
Q 038373 326 LDPSKAIVDKI----PLPPRKKQ---SATNMLEEK--NR--VSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRY-VLH 393 (475)
Q Consensus 326 ~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~--~~--~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t-~~~ 393 (475)
..|.......+ ...+.... .....+... +. ...........|++++|...|+++.+.. |+... +..
T Consensus 732 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 809 (899)
T TIGR02917 732 RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNN 809 (899)
T ss_pred hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 76665321100 00000000 000000000 00 0000011122566888888888887653 44322 222
Q ss_pred cccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCceEEEecCCccccccCCcCCCCC
Q 038373 394 DIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKCSCGD 473 (475)
Q Consensus 394 ~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g~cs~~~ 473 (475)
+.......+. ....+.+..+..+.+..+.....+...+..-|+.++|.+.+.++...+. .+...+-+.....+..|+
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP--EAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHcCC
Confidence 2111111111 1111222223332222221112333445666888888888888776542 244444444444444433
No 11
>PF13041 PPR_2: PPR repeat family
Probab=99.59 E-value=3.7e-15 Score=102.59 Aligned_cols=50 Identities=28% Similarity=0.584 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373 192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241 (475)
Q Consensus 192 ~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~ 241 (475)
||+++||+||++|++.|++++|+++|++|++.|+.||..||+++|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999985
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2e-11 Score=115.95 Aligned_cols=227 Identities=15% Similarity=0.260 Sum_probs=177.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhccc--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDAS--ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL 169 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L 169 (475)
..+..||.+||.++|+.-..++|.+++++-.. ...+..+||.+|.+-. +..+.++..+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHH
Confidence 45667899999999999999999999987543 2278889999998764 33448899999999999999999999
Q ss_pred HHHHHHcCCHHHHH----HHHHhcc----cCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCCC----CHHHH
Q 038373 170 IEMYGKCCNTRLAR----KVFDQLR----KRNLSSWHLMISGYAANGQGAD-GLMLFEQMRK----TGPHP----DKETF 232 (475)
Q Consensus 170 i~~~~k~g~~~~A~----~~f~~m~----~~~~~tyn~li~~~~~~g~~~~-A~~l~~~M~~----~g~~p----d~~t~ 232 (475)
+.+..+.|+++.|+ +++.+|+ +|...+|..+|.-+++.++..+ |..+..+... +-++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99999999888765 4566776 5888899999999999998844 5555555554 23443 55678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhCC--Cc-CC---HHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHH
Q 038373 233 LVVFAACASAEAVKEGFLYFEIMKNDYG--IV-PG---IEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEAL 303 (475)
Q Consensus 233 ~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~-p~---~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~l 303 (475)
.+.++.|.+..+.+.|.+++.-....-+ +. |+ ..-|..+.+..|....++.-.+.++.| -.-|+..+-.-+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 8999999999999999999988764322 22 22 234678899999999999999999999 234777787888
Q ss_pred HHHHHHcCCchHHHHHHHH
Q 038373 304 RNFAQIHGDVELEDRAEEL 322 (475)
Q Consensus 304 i~~~~~~g~~~~a~~~~~~ 322 (475)
+.+....|.++..-+++.-
T Consensus 440 lrA~~v~~~~e~ipRiw~D 458 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKD 458 (625)
T ss_pred HHHHhhcCcchhHHHHHHH
Confidence 8888888888555454443
No 13
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.47 E-value=6.8e-14 Score=113.61 Aligned_cols=99 Identities=60% Similarity=1.014 Sum_probs=83.2
Q ss_pred EEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccHHHH--------HHhhhhhhHHHHHHhhcccCCCCCchhe
Q 038373 357 SDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAK--------EKALQYHSERLAIAYGLISTPPRMPLRI 428 (475)
Q Consensus 357 ~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~--------~~~l~~~~~~l~~~~~~~~~~~~~~~~i 428 (475)
+.|..++..+... ++..+|...|+.|+.......++...+ +..+..|+|++|.+||++.. .+
T Consensus 9 h~F~sgd~shp~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~------~v 78 (116)
T PF14432_consen 9 HSFVSGDRSHPQS----ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT------RV 78 (116)
T ss_pred EEEEeCCCcCccH----HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce------eE
Confidence 5677665444444 788888899999998877766655443 45778899999999998888 78
Q ss_pred eccc-cccccccchhHHHhhhcCceEEEecCCcccccc
Q 038373 429 IKNL-RICGDCHNAIKIMSKIVGRELIVRDNKRFHHFR 465 (475)
Q Consensus 429 i~~~-~~~g~~~~A~~~~~~m~~~~i~~~d~~~~~~~~ 465 (475)
++++ +.|+|||++.|+++++.+|.|++||..+||||+
T Consensus 79 vkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 79 VKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred EecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 8888 999999999999999999999999999999995
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=3.8e-13 Score=92.52 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
||.++||++|++|++.|++++|.++|++|.+.|+.||..|||+||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999999999999999999988875
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.34 E-value=4.4e-10 Score=119.88 Aligned_cols=230 Identities=8% Similarity=-0.082 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
.+..+..+....|++++|++.|++.....|+. ..+..+-..+...|++++|...++...+.. ..+...+..+...|..
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~ 156 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVL 156 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 34445566677889999999888877655544 456667777888888999988888887753 3456778888888888
Q ss_pred cCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373 176 CCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~ 252 (475)
.|+.++|...++.+. .| +...|..+ ..+.+.|++++|..+++++......++...+..+..++...|+.++|...+
T Consensus 157 ~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 157 MDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred CCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 899998888888764 23 23333333 347788888888888888776543345555556667778888888888888
Q ss_pred HHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHH----HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373 253 EIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIE----AEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 253 ~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~----A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
+..... .| +...+..+-..|.+.|+.++ |...|++. ...| +...+..+...+...|+.+.|...++...+
T Consensus 236 ~~al~~---~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 236 ESALAR---GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 887732 23 45666777888888888875 67777777 3344 455777777788888888888777777777
Q ss_pred cCCCCh
Q 038373 326 LDPSKA 331 (475)
Q Consensus 326 ~~~~~~ 331 (475)
+.|+..
T Consensus 313 l~P~~~ 318 (656)
T PRK15174 313 THPDLP 318 (656)
T ss_pred hCCCCH
Confidence 776654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.31 E-value=1.4e-09 Score=115.99 Aligned_cols=230 Identities=13% Similarity=0.036 Sum_probs=153.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC 177 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g 177 (475)
+...-..|.+.|++++|+..|++.....|+...|..+-.++.+.|++++|.+.+...++.. ..+...+..+-.+|...|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 4455566888999999999999988777998889999999999999999999999988764 345678888888999999
Q ss_pred CHHHHHHHHHhccc--------------------------------C-CHHHHHHHHH----------------------
Q 038373 178 NTRLARKVFDQLRK--------------------------------R-NLSSWHLMIS---------------------- 202 (475)
Q Consensus 178 ~~~~A~~~f~~m~~--------------------------------~-~~~tyn~li~---------------------- 202 (475)
++++|..-|..... + +..+|..+-.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 99988765432210 0 0000000000
Q ss_pred ----HH----------HhcCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-H
Q 038373 203 ----GY----------AANGQGADGLMLFEQMRKTG-PHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-I 265 (475)
Q Consensus 203 ----~~----------~~~g~~~~A~~l~~~M~~~g-~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~ 265 (475)
++ ...+++++|++.|++..+.+ ..|+ ...|+.+-..+...|++++|...++... ...|+ .
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal---~l~P~~~ 365 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI---ELDPRVT 365 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcH
Confidence 00 11245677777777776654 2343 3456666666667777777777777766 23444 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 266 EHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 266 ~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
..|..+...|...|++++|.+.|++. ...| +...|..+...+...|+++.|...++...++.|+..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 45666666677777777777777665 2223 455666666667777777777777766666666543
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.30 E-value=1.5e-09 Score=115.90 Aligned_cols=231 Identities=10% Similarity=0.002 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
...|..+...+.+.|++++|...+++.....|+.......+..+...|++++|..+++.+.+..-.++...+..+...+.
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 33444455555555555555555544333222222211111224445555555555555544422223333444455666
Q ss_pred HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 038373 175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGAD----GLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVK 246 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~----A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~ 246 (475)
+.|+.++|...|++..+ | +...++.+-..|...|++++ |+..|++..+. .| +...+..+...+...|+++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 66666766666666542 2 45566677777777777764 67777777663 34 4457777778888888888
Q ss_pred HHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHHcCCchHHHHHHHHH
Q 038373 247 EGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEA-LRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 247 ~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~-li~~~~~~g~~~~a~~~~~~l 323 (475)
+|...++.... ..|+ ...+..+...|.+.|++++|.+.|+++ ...|+...+.. +...+...|+.++|...++..
T Consensus 302 eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 302 KAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888773 2443 445666778888888888888888877 34566544433 345677888888888887777
Q ss_pred hccCCCC
Q 038373 324 GDLDPSK 330 (475)
Q Consensus 324 ~~~~~~~ 330 (475)
.+..|+.
T Consensus 379 l~~~P~~ 385 (656)
T PRK15174 379 IQARASH 385 (656)
T ss_pred HHhChhh
Confidence 6666654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.23 E-value=8.4e-09 Score=109.96 Aligned_cols=229 Identities=13% Similarity=0.080 Sum_probs=183.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.+...|+.+-..+...|++++|+..|++.....|+ ...|..+...+...|++++|...++...+.. ..+..+|..+..
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~ 407 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQ 407 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567888888889999999999999987766676 4468888888899999999999999998764 456788999999
Q ss_pred HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKE 247 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~ 247 (475)
.|...|++++|...|++..+ | +...|..+...|.+.|++++|+..|++.... .| +...|+.+-..+...|++++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHH
Confidence 99999999999999998763 4 5678888899999999999999999998764 35 46788889999999999999
Q ss_pred HHHHHHHHhhhCCCcCC--H------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHH
Q 038373 248 GFLYFEIMKNDYGIVPG--I------EHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFAQIHGDVELED 317 (475)
Q Consensus 248 a~~~~~~m~~~~g~~p~--~------~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~ 317 (475)
|...|+.... +.|+ . ..++.....|...|++++|.+++++. .+.|+ ...+..|...+...|+.++|.
T Consensus 486 A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 486 AIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 9999998772 2232 1 11222333445579999999999885 44454 456888889999999998888
Q ss_pred HHHHHHhccC
Q 038373 318 RAEELLGDLD 327 (475)
Q Consensus 318 ~~~~~l~~~~ 327 (475)
+.++...++.
T Consensus 563 ~~~e~A~~l~ 572 (615)
T TIGR00990 563 KLFERAAELA 572 (615)
T ss_pred HHHHHHHHHh
Confidence 8777766553
No 19
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.3e-09 Score=103.89 Aligned_cols=175 Identities=14% Similarity=0.159 Sum_probs=126.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----------------------------HcCCHH
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG-----------------------------KCCNTR 180 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~-----------------------------k~g~~~ 180 (475)
|=|.|++. ...|.+..+.-+|+.|...|+..+..+--.|+..-| |.|.+.
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 34555543 334667777777777777776666655555544322 222222
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCC
Q 038373 181 LARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYG 260 (475)
Q Consensus 181 ~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g 260 (475)
+ ++-+..-+.-.||.+||.|+|+--..+.|.++++|-.+...+.+..+||.+|.+-+- ..+.++..+|... .
T Consensus 197 d---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisq-k 268 (625)
T KOG4422|consen 197 D---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQ-K 268 (625)
T ss_pred H---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHh-h
Confidence 2 222222234468999999999999999999999999988888999999999987553 3347888999955 9
Q ss_pred CcCCHHHHHHHHHHHHhcCCHHHHH----HHHHhC---CCCCCHHHHHHHHHHHHHcCCc
Q 038373 261 IVPGIEHYIAIIKVLGSAGHLIEAE----EFVERM---PFEPTVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 261 ~~p~~~~y~~li~~~~~~g~~~~A~----~~~~~m---~~~p~~~t~~~li~~~~~~g~~ 313 (475)
+.||..|+|+++....+.|+++.|. +++.+| |++|...+|..+|.-+++.++.
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 9999999999999999999887654 455555 8999999999999888888776
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.14 E-value=2.6e-08 Score=109.53 Aligned_cols=230 Identities=11% Similarity=0.006 Sum_probs=181.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~ 173 (475)
+...|..+-.++.. |+.++|+..|.+.....|+......+...+...|++++|...++.+... .|+...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 56677777777776 8999999988876665687655444455556899999999999987654 45555567777889
Q ss_pred HHcCCHHHHHHHHHhcccCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373 174 GKCCNTRLARKVFDQLRKRNL---SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~~~~---~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 250 (475)
.+.|+.++|...|++..+.+. ..+..+...+.+.|++++|+..|++..+ +.|+...|..+-..+.+.|+.++|..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998765332 2233333344456999999999999887 45788899999999999999999999
Q ss_pred HHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373 251 YFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLD 327 (475)
Q Consensus 251 ~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~ 327 (475)
.++... ...|+ ...++.+-..+...|+.++|.+.|++. ...| +...+..+-.++...|+.+.|...++...++.
T Consensus 631 ~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 631 DLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999988 34564 566778888999999999999999987 3344 56778888889999999999999999988888
Q ss_pred CCCh
Q 038373 328 PSKA 331 (475)
Q Consensus 328 ~~~~ 331 (475)
|+..
T Consensus 708 P~~a 711 (987)
T PRK09782 708 DNQA 711 (987)
T ss_pred CCCc
Confidence 7664
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=3.7e-08 Score=90.44 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~ 173 (475)
...+..+...+.+.|++++|.+.|++.....|+ ...+..+...+...|++++|.+.++...+.. ..+...+..+...|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 456667777888888888888888876554444 4556667777778888888888888777664 34556677777777
Q ss_pred HHcCCHHHHHHHHHhcccC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373 174 GKCCNTRLARKVFDQLRKR-----NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~~-----~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a 248 (475)
...|++++|.+.|++..+. ....|..+...|...|++++|...|++..... ..+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 7788888888887776431 23456666667777777777777777766542 12345666666777777777777
Q ss_pred HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
...+++..+. ...+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7777776632 2224455556666667777777777666554
No 22
>PF12854 PPR_1: PPR repeat
Probab=99.11 E-value=1.2e-10 Score=72.38 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=31.0
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 157 SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 157 ~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
.|+.||.+|||+||++|||.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999985
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=9.7e-08 Score=87.67 Aligned_cols=196 Identities=15% Similarity=0.059 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHH
Q 038373 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGY 204 (475)
Q Consensus 128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~ 204 (475)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4567788888999999999999999998764 44577888899999999999999999987753 3566888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 038373 205 AANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIE 283 (475)
Q Consensus 205 ~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~ 283 (475)
...|++++|.+.|++.......| +...+..+...+...|++++|...+....+. ...+...+..+...+.+.|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998753333 3456777788889999999999999998842 22245678889999999999999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 284 AEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 284 A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
|.+.+++. .. ..+...+..+...+...|+.+.|....+.+.+.
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999987 22 345667777778888899998877776666543
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.05 E-value=1.5e-10 Score=110.84 Aligned_cols=223 Identities=16% Similarity=0.132 Sum_probs=63.5
Q ss_pred HHHHcCChHHHHHHHHhcc-cC-CCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 038373 104 SLCKEGKVREAIEYMGQDA-SA-SAGYDVFSSLLD-SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTR 180 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~-~~-~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~ 180 (475)
.+.+.|++++|++++++.. .. +|+...|-.++. .+-..++.+.|.+.++.+.+.+- -+...+..++.. ...++.+
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccccc
Confidence 4455566666666664322 22 233333333222 23334556666666666655442 244445555555 4556666
Q ss_pred HHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373 181 LARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVFAACASAEAVKEGFLYFEIMKN 257 (475)
Q Consensus 181 ~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 257 (475)
+|.+++++.- .++...+..++..+.+.|+++++.+++++..... ...|...|..+...+.+.|+.++|.+.++...+
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665555432 2344455555555666666666666665554321 233444555555555566666666666665552
Q ss_pred hCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 258 DYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 258 ~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
..|+ ....+.++..+...|+.+++.++++.. ....|...|..+..+|...|+.+.|...++......|++.
T Consensus 175 ---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 175 ---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp ---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred ---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 2342 444555666666666666555555544 1123334455555556666666555555555555444443
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.04 E-value=1.8e-08 Score=100.21 Aligned_cols=187 Identities=11% Similarity=0.098 Sum_probs=143.6
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHH
Q 038373 137 SCGNLKSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGAD 212 (475)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~ 212 (475)
.|-..|.++.|..-|++.++. .|+ ...||.|-+++-..|++.+|.+.|..... |+ .-+-|.|-..|...|.+++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH
Confidence 344456677777777666654 333 56788888888888888888888877653 33 3477788888888888888
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 213 GLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 213 A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
|..+|..-.+ +.|.- ..+|.|-..|-+.|++++|...+++.. .+.|+ ...|+.+=+.|-..|+++.|...+.+
T Consensus 373 A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 373 ATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred HHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 8888887765 55653 478888888899999999999888877 57776 45678888888888999999988887
Q ss_pred C-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 291 M-PFEPT-VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 291 m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
. .+.|. ...++.|-..|...|++.+|...++.-..++|+-
T Consensus 448 AI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 448 AIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 6 55565 3567788889999999999999998888888764
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.00 E-value=1.5e-07 Score=102.51 Aligned_cols=346 Identities=10% Similarity=0.006 Sum_probs=197.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.+...+..+...+.+.|++++|.++|++.....|+ ...+..+...+...|++++|...++...+.. ..+.. +..+..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~ 124 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY 124 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence 44556788888888888888888888886654443 4556677777888888888888888887763 34555 777888
Q ss_pred HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHH------------------------------
Q 038373 172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFE------------------------------ 218 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~------------------------------ 218 (475)
+|.+.|+.++|...|++..+ | +...+..+...+...|+.++|++.++
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~ 204 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRS 204 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccC
Confidence 88888888888888887764 3 44455566666666666665554444
Q ss_pred ----------------HHHHc-CCCCCHH-HH----HHHHHHHHccCCHHHHHHHHHHHhhhCCC-cCCHHHHHHHHHHH
Q 038373 219 ----------------QMRKT-GPHPDKE-TF----LVVFAACASAEAVKEGFLYFEIMKNDYGI-VPGIEHYIAIIKVL 275 (475)
Q Consensus 219 ----------------~M~~~-g~~pd~~-t~----~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~y~~li~~~ 275 (475)
.+.+. .-.|+.. .+ ...+.++...|+.++|...|+.+.+. +- .|+.. --.+...|
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-~~~~P~~a-~~~la~~y 282 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-GQIIPPWA-QRWVASAY 282 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-CCCCCHHH-HHHHHHHH
Confidence 33321 1122211 11 11133445667788888888887743 32 23321 12245678
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCccccccee
Q 038373 276 GSAGHLIEAEEFVERM-PFEPT-----VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNM 349 (475)
Q Consensus 276 ~~~g~~~~A~~~~~~m-~~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (475)
...|+.++|.++|+++ ...|. ...+..|..++...|+.++|.+.++.+.+..|.....-.... ..+-..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~----~~p~~~~ 358 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPT----SIPNDDW 358 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCC----CCCCchH
Confidence 8888888888888776 22222 234555556677778887766666666555443211000000 0000000
Q ss_pred EEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccc-cHHHHHHhhhhhhHHHHHHhhcccCCCCCchhe
Q 038373 350 LEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDI-DEEAKEKALQYHSERLAIAYGLISTPPRMPLRI 428 (475)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~i 428 (475)
.. ............|++++|+++++++... .|+.......+ ......+......+.+..+..+.+.........
T Consensus 359 ~~---a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 359 LQ---GQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred HH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 00 0000001123367799999999998754 57764422211 112222222223333444444443322222233
Q ss_pred eccccccccccchhHHHhhhcCc
Q 038373 429 IKNLRICGDCHNAIKIMSKIVGR 451 (475)
Q Consensus 429 i~~~~~~g~~~~A~~~~~~m~~~ 451 (475)
..++-..|+.++|.++++++..+
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh
Confidence 34566778999999999888654
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.99 E-value=6.7e-09 Score=103.23 Aligned_cols=328 Identities=12% Similarity=0.095 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM- 172 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~- 172 (475)
..+|..+-+.+-..|++++|+.+++.+.+..|+- ..|..+-.++...|+.+.|.+.|.+.++. .|+.+...+-+.-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 4578889999999999999999999998877754 56999999999999999999999988875 4766554444333
Q ss_pred HHHcCCHHHHHHHHHhcc--cCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHH
Q 038373 173 YGKCCNTRLARKVFDQLR--KRN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~--~~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a 248 (475)
+-..|++++|...|-+.. +|. .+.|+.|-..+-..|+..+|+.-|++... +.|+- -.|..|-..|...+.+++|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHH
Confidence 334688888888876544 343 35777777777777888888777777654 34442 2455555555544444444
Q ss_pred HHHHHHHhhh-------------------------------CCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038373 249 FLYFEIMKND-------------------------------YGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP 295 (475)
Q Consensus 249 ~~~~~~m~~~-------------------------------~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p 295 (475)
...+...... ..+.|+ ...|+.|-+++-..|++.+|.+.+++- ...|
T Consensus 272 vs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 272 VSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 4444433310 023333 234555555555555555555555444 2122
Q ss_pred -CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHH
Q 038373 296 -TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKG 374 (475)
Q Consensus 296 -~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 374 (475)
-..+.+.|-..|...|+++.|.+.++.-.+..|.-..+ .+.+....-+.|++.+|+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa----------------------~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA----------------------HNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh----------------------hhhHHHHHHhcccHHHHHH
Confidence 22344445555555555555555444444433332211 1112223345677888888
Q ss_pred HHHHHHHcCcccCCccccccccH-HHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcC
Q 038373 375 LNGQMREAGYVPDTRYVLHDIDE-EAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVG 450 (475)
Q Consensus 375 l~~~M~~~G~~Pd~~t~~~~l~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~ 450 (475)
-+++-. .|.|+-.--...+.. +...+....+......+.-+.++....-.-+-..|...|.+.+|+.-.+.-..
T Consensus 410 ~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 410 CYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 887654 356663322222221 11122222222222233332333222222455567888999999887776543
No 28
>PF12854 PPR_1: PPR repeat
Probab=98.99 E-value=6.2e-10 Score=69.17 Aligned_cols=32 Identities=31% Similarity=0.446 Sum_probs=27.9
Q ss_pred CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 260 GIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 260 g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 78888888888888888888888888888887
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.98 E-value=3.6e-07 Score=100.61 Aligned_cols=234 Identities=6% Similarity=-0.094 Sum_probs=178.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.|+......+...+.+.|++++|...|++.....|+...+..+..++.+.|++++|.+.++...+.. ..+...+..+..
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 3554333333444568999999999999876655666666677778889999999999999998875 333344444444
Q ss_pred HHHHcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a 248 (475)
.+.+.|++++|...|++.. .|+...|..+...+.+.|+.++|+..|++.... .|+ ...++.+-.++...|+.++|
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 5556699999999999876 478889999999999999999999999998874 464 45677777899999999999
Q ss_pred HHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373 249 FLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTV-EVWEALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 249 ~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
..+++...+ ..| +...+..+-..|.+.|++++|++.|++. ...|+. .+.-..-....+..+++.+.+.++.-..
T Consensus 663 i~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 663 REMLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999883 345 4677889999999999999999999998 556654 2222333344556667666777777766
Q ss_pred cCCCCh
Q 038373 326 LDPSKA 331 (475)
Q Consensus 326 ~~~~~~ 331 (475)
+.+...
T Consensus 740 ~~~~~~ 745 (987)
T PRK09782 740 FSFDSS 745 (987)
T ss_pred cCccch
Confidence 776665
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.97 E-value=3.7e-09 Score=101.27 Aligned_cols=220 Identities=13% Similarity=0.076 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
-|-.+-.-.-..+++++|.+.++++...++. ...|..++.. ...+++++|.++....-+.. ++...+..++..|.+
T Consensus 46 ~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 46 YWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHH
Confidence 3433333445688899999999988775543 4456666666 68899999999988775543 566777889999999
Q ss_pred cCCHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHH
Q 038373 176 CCNTRLARKVFDQLR-----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGF 249 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~-----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~ 249 (475)
.|+.+++.++++... ..+...|..+...+.+.|+.++|++++++..+. .|| ....+.++..+...|+.+++.
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~ 200 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAR 200 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHH
Confidence 999999999999865 246778999999999999999999999999884 564 667889999999999999999
Q ss_pred HHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 250 LYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 250 ~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
+++...... ...|...+..+-.+|...|+.++|..+|++. ...| |..+...+.+++...|+.+.|.++...+
T Consensus 201 ~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 201 EALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999988844 2445566789999999999999999999998 3344 6667777788999999998777765544
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.95 E-value=2e-07 Score=106.22 Aligned_cols=228 Identities=13% Similarity=0.030 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--------CCCH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF--------VKDV 163 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--------~p~~ 163 (475)
.+...+..+-..|.+.|++++|++.|++.....|+ ...+..+...+. .++.++|..+++.+....- ....
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 34556677777788888888888888876654444 233333333331 2233333333332211100 0001
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHH-------
Q 038373 164 ELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETF------- 232 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~------- 232 (475)
..+..+...|...|++++|.+.|++..+ | +...+..+...|.+.|++++|...|++..+. .|+ ...+
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l 539 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYL 539 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 1233344444455555555555554432 2 2334444444455555555555555554432 121 1111
Q ss_pred -------------------------------------HHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHH
Q 038373 233 -------------------------------------LVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVL 275 (475)
Q Consensus 233 -------------------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~ 275 (475)
..+...+...|+.++|..+++. ...+...+..|-..|
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWA 613 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHH
Confidence 1223334445555555554441 112333455666667
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCC
Q 038373 276 GSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPS 329 (475)
Q Consensus 276 ~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~ 329 (475)
.+.|+.++|.+.|++. ...| +...+..+...+...|+.++|.+.++.+.+..|+
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 7777777777777766 2233 4566666777777777776666666665555443
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.95 E-value=7.5e-09 Score=106.67 Aligned_cols=254 Identities=15% Similarity=0.113 Sum_probs=128.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHh--cccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 91 GNAQLESLDVNLLSLCKEGKVREAIEYMGQ--DASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 91 ~~~~~~~~n~li~~~~~~g~~~~A~~l~~~--~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
-.|+-+||..+|..||..|+++.|- +|.- +...+.+...|+.++.+...+++.+.+. .|-..||+.
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 3455566666666666666655555 4432 2223344555555555555555554443 455555666
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373 169 LIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMR-KTGPHPDKETFLVVFAACASAEAVKE 247 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~-~~g~~pd~~t~~~li~~~~~~g~~~~ 247 (475)
|..+|.+.||+.. |+..++ -.-.++..+..+|....-..++.... .-+.-||..+- +.-....|-++.
T Consensus 89 Ll~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~eglwaq 157 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVLEGLWAQ 157 (1088)
T ss_pred HHHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHHHHHHHH
Confidence 6666666655544 222221 11223334444554444444433322 12334554433 222333455566
Q ss_pred HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA-GHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
+.+++..|-...-..|-.+ .+.-.... ..+++-..+-....-.|+..+|.+++......|++ +-+..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~---d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDV---DGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCch---hhHHHHHHHH
Confidence 6665544431101111111 12211111 12333333333332259999999999999999999 4566666666
Q ss_pred CCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccc
Q 038373 327 DPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDI 395 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l 395 (475)
...+.... . |.|-.-.+..+...-++.+++.|++.|+.||..|+..-+
T Consensus 231 ke~gfpir----------~-----------HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 231 KEKGFPIR----------A-----------HYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHcCCCcc----------c-----------ccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 65554221 1 111111122444566788999999999999999976543
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.93 E-value=2.9e-07 Score=92.65 Aligned_cols=257 Identities=10% Similarity=0.023 Sum_probs=180.9
Q ss_pred cCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 038373 108 EGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN--KLIEMYGKCCNTRLARK 184 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~Li~~~~k~g~~~~A~~ 184 (475)
.|++++|.+++.......+++.. |.....+..+.|+.+.|.+.+.++.+. .|+...+- .....+...|+.++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999988875543333333 333344447889999999999999875 45554333 44678899999999999
Q ss_pred HHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHH
Q 038373 185 VFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-------ETFLVVFAACASAEAVKEGFLYFEI 254 (475)
Q Consensus 185 ~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-------~t~~~li~~~~~~g~~~~a~~~~~~ 254 (475)
.+++..+ | +...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9998874 3 6678889999999999999999999999988766433 2444445544555566677777777
Q ss_pred HhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChhh
Q 038373 255 MKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIV 333 (475)
Q Consensus 255 m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~ 333 (475)
+-+ ....+.....++...+.+.|+.++|.+++++. ...||.... ++.+....++.+.+.+..+.+.+-.|++...
T Consensus 255 lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l 330 (398)
T PRK10747 255 QSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLL 330 (398)
T ss_pred CCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHH
Confidence 653 23446777889999999999999999999887 444555221 3344445688877777777777777766532
Q ss_pred hccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcccccc
Q 038373 334 DKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHD 394 (475)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~ 394 (475)
-.. +.......+++++|.+.|+...+. .|+..++..+
T Consensus 331 ~l~----------------------lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L 367 (398)
T PRK10747 331 WST----------------------LGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL 367 (398)
T ss_pred HHH----------------------HHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 100 001112256699999999988864 5887765543
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.91 E-value=1.2e-06 Score=88.07 Aligned_cols=215 Identities=9% Similarity=-0.052 Sum_probs=151.2
Q ss_pred HHHHHHcCChHHHHHHHHhcccCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 038373 102 LLSLCKEGKVREAIEYMGQDASASAGYDVFS--SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT 179 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~ 179 (475)
..+..+.|++++|.+.|.++....|+...+. .....+...|+.+.|.+.++.+.+.. +-+..+...+...|.+.|++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhH
Confidence 3334678888888888877766556654433 22345667788888888888877765 44567777777888888888
Q ss_pred HHHHHHHHhcccC---------------------------------------------CHHHHHHHHHHHHhcCChHHHH
Q 038373 180 RLARKVFDQLRKR---------------------------------------------NLSSWHLMISGYAANGQGADGL 214 (475)
Q Consensus 180 ~~A~~~f~~m~~~---------------------------------------------~~~tyn~li~~~~~~g~~~~A~ 214 (475)
++|.+++..+.+. +......+..++...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888777766531 2224445567777888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 038373 215 MLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-P 292 (475)
Q Consensus 215 ~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~ 292 (475)
+++++..+. .||.. ..++.+....++.+++.+..+...++ .| |...+.++-..+.+.|++++|.+.|+.. .
T Consensus 284 ~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 284 QIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred HHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888887763 44442 11233444568888888888887743 33 4455778888888899999999999888 6
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038373 293 FEPTVEVWEALRNFAQIHGDVELEDRAEELLG 324 (475)
Q Consensus 293 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~ 324 (475)
..|+..+|..|-..+.+.|+.++|.+.++.-.
T Consensus 357 ~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 357 QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67888888888888888899877776666543
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.89 E-value=1e-06 Score=100.61 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=172.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
+..+...+...|++++|++.|++.....|+ ...+..+...+.+.|++++|...++.+.+.. ..+...+..+...+.+.
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence 445566788899999999999998776675 4456778888999999999999999998753 33455555555667889
Q ss_pred CCHHHHHHHHHhcccC----CHH---------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373 177 CNTRLARKVFDQLRKR----NLS---------SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE 243 (475)
Q Consensus 177 g~~~~A~~~f~~m~~~----~~~---------tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g 243 (475)
|+.++|...++.+... +.. .+-.+...+...|+.++|.++++. ...+...+..+-..+.+.|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence 9999999999988632 111 233456778899999999999872 2345567778888899999
Q ss_pred CHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHH
Q 038373 244 AVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFAQIHGDVELEDRAE 320 (475)
Q Consensus 244 ~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~ 320 (475)
+.++|...|+...+. .| +...+..+...|...|+.++|.+.++.. ...|+ ...+..+-..+...|+.++|.+.+
T Consensus 618 ~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 618 DYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998842 45 5678889999999999999999999987 34444 455666777888899998888888
Q ss_pred HHHhccCC
Q 038373 321 ELLGDLDP 328 (475)
Q Consensus 321 ~~l~~~~~ 328 (475)
+.+....+
T Consensus 695 ~~al~~~~ 702 (1157)
T PRK11447 695 NRLIPQAK 702 (1157)
T ss_pred HHHhhhCc
Confidence 87766543
No 36
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.89 E-value=3.9e-07 Score=92.35 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccC-----C---CCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHc---CC-CCC-
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASA-----S---AGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTS---AF-VKD- 162 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~-----~---p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~-~p~- 162 (475)
+..-|-..|...|++++|..++++..+. | |...+ .+.+-..|...+++++|..+|+++..- .+ .-+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444888899999999999999864432 2 44433 344556778889999999999998653 12 222
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHhccc----------CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHH---cCCC
Q 038373 163 --VELNNKLIEMYGKCCNTRLARKVFDQLRK----------RNLS-SWHLMISGYAANGQGADGLMLFEQMRK---TGPH 226 (475)
Q Consensus 163 --~~~~~~Li~~~~k~g~~~~A~~~f~~m~~----------~~~~-tyn~li~~~~~~g~~~~A~~l~~~M~~---~g~~ 226 (475)
..+++.|-..|++.|++++|...+++..+ +.+. -++.++..|+..+++++|..+++.-.+ .-+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 34566666689999999999988876431 2333 567788889999999999999987543 2234
Q ss_pred CCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhhC---CC--cCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 038373 227 PDK----ETFLVVFAACASAEAVKEGFLYFEIMKNDY---GI--VPG-IEHYIAIIKVLGSAGHLIEAEEFVERM----- 291 (475)
Q Consensus 227 pd~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~~---g~--~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m----- 291 (475)
++. -+|+.|-..|-+.|++++|+++|+...... +. .+. ...++-|-..|.+.++.++|.++|.+-
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 443 489999999999999999999999876432 11 222 456778888899999999999999876
Q ss_pred ---CCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373 292 ---PFEPTV-EVWEALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 292 ---~~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
+..||+ .+|..|...|...|+.|.|.+..+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 233444 5789999999999999988888776643
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.88 E-value=1.6e-06 Score=87.64 Aligned_cols=220 Identities=10% Similarity=-0.030 Sum_probs=150.4
Q ss_pred HHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHH
Q 038373 102 LLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL-------NNKLIEMY 173 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~Li~~~ 173 (475)
...+.+.|++++|++.++.+....| +..++..+...+...|+++++.+++..+.+.++.+.... +..+++.-
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888877766555 444567777778888888888888888888765432222 11112111
Q ss_pred HHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHH
Q 038373 174 GKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET---FLVVFAACASAEAVKE 247 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t---~~~li~~~~~~g~~~~ 247 (475)
......+...++.+..++ .+...+-.+...+...|+.++|.+++++..+. .||... .....-.....++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHH
Confidence 222223444445555543 37778888999999999999999999999875 344432 1222222334577888
Q ss_pred HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER--M-PFEPTVEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
+.+.++...+...-.|+.....++-..+.+.|++++|.+.|+. . ...||...+..+...+.+.|+.++|.+.++.-
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887774423333224455788889999999999999993 3 56799999999999999999998887777653
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=98.88 E-value=1.1e-06 Score=92.41 Aligned_cols=226 Identities=10% Similarity=-0.018 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHHHH-----cCChHHHHHHHHhcccCCCCHH-HHHHHHHHHh---------ccCCHHHHHHHHHHHHHc
Q 038373 93 AQLESLDVNLLSLCK-----EGKVREAIEYMGQDASASAGYD-VFSSLLDSCG---------NLKSIEMGKRVHELLRTS 157 (475)
Q Consensus 93 ~~~~~~n~li~~~~~-----~g~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~m~~~ 157 (475)
.+.-.|...+.+... .+..++|+++|++.....|+.. .|..+-.++. ..+++++|...+++..+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 334445555555321 1235688889988777667654 3444433332 234588999999999887
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHH
Q 038373 158 AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE-TFL 233 (475)
Q Consensus 158 g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~ 233 (475)
. +-+...+..+-..+...|++++|...|++.. .| +...|..+-..|...|++++|+..+++..+. .|+.. .+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHH
Confidence 5 4577888888888999999999999999876 35 4568888889999999999999999998874 44432 333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHc
Q 038373 234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEV-WEALRNFAQIH 310 (475)
Q Consensus 234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t-~~~li~~~~~~ 310 (475)
.++..+...|++++|...+++.... ..|+ ...+..+-..|...|+.++|.+.+.++ ...|+..+ ++.|-..|+..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 4445566789999999999888733 2343 444677778889999999999999988 33455443 44454566766
Q ss_pred CCchHHHHHHHHHhc
Q 038373 311 GDVELEDRAEELLGD 325 (475)
Q Consensus 311 g~~~~a~~~~~~l~~ 325 (475)
|+ .+...++.+.+
T Consensus 489 g~--~a~~~l~~ll~ 501 (553)
T PRK12370 489 SE--RALPTIREFLE 501 (553)
T ss_pred HH--HHHHHHHHHHH
Confidence 63 45555554443
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.87 E-value=2e-08 Score=103.64 Aligned_cols=193 Identities=14% Similarity=0.081 Sum_probs=116.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHEL-LRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~Li~ 171 (475)
-+...|+.++.+..++++.+.+. .|-..||..|+.+|...||+.. .+..++ |. .++.
T Consensus 57 v~e~vf~~lv~sh~~And~Enpk---------ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~ 114 (1088)
T KOG4318|consen 57 VREGVFRGLVASHKEANDAENPK---------EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQ 114 (1088)
T ss_pred ccchhHHHHHhcccccccccCCC---------CCchhHHHHHHHHHHhccchHH-HHHHHHHHH------------HHHh
Confidence 34567899999999998877664 3888999999999999999876 222222 22 2233
Q ss_pred HHHHcCCHHHHHHHHHhccc-----CCHH----------HHHHHHHHHHhc------CC-----------hHHHHHHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK-----RNLS----------SWHLMISGYAAN------GQ-----------GADGLMLFEQ 219 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~-----~~~~----------tyn~li~~~~~~------g~-----------~~~A~~l~~~ 219 (475)
.+...|.-..-..++..+.. ||.. .|..+++-..+. +- .....++..
T Consensus 115 sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~- 193 (1088)
T KOG4318|consen 115 SFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLN- 193 (1088)
T ss_pred hhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHH-
Confidence 34444444444444433221 1211 233333332111 10 111122222
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCC
Q 038373 220 MRKTGP-HPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEP 295 (475)
Q Consensus 220 M~~~g~-~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p 295 (475)
|.+.+. .||..+|..++++-.-+|+++.|..++.+|+++ |+..+..-|-.|+-+ .+...-++.++..| |+.|
T Consensus 194 ~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p 269 (1088)
T KOG4318|consen 194 MCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP 269 (1088)
T ss_pred HHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC
Confidence 233223 478888888888888888888888888888855 887777666666654 66666666666666 7788
Q ss_pred CHHHHHHHHHHHHHcCC
Q 038373 296 TVEVWEALRNFAQIHGD 312 (475)
Q Consensus 296 ~~~t~~~li~~~~~~g~ 312 (475)
+..|+..-+-.+..+|.
T Consensus 270 ~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 270 GSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CcchhHHHHHhhhcchh
Confidence 88887766555555443
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.86 E-value=3e-07 Score=92.94 Aligned_cols=274 Identities=14% Similarity=-0.004 Sum_probs=180.8
Q ss_pred HHHHHHHH--HHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 98 LDVNLLSL--CKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 98 ~n~li~~~--~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
+..+..++ ...|+++.|.+.+.+.....|+... |-..-.+..+.|+.+.|.+.+....+.--.++..+.-+....+.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34455553 3689999999999887766676544 33444567788999999999999876531222334455578888
Q ss_pred HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCCHHHH
Q 038373 175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC---ASAEAVKEG 248 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~---~~~g~~~~a 248 (475)
..|+.+.|...++.+.+ | +...+..+...|.+.|++++|.+++.++.+.++.+.......-..+. ...+..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999874 4 66688899999999999999999999999987643332211111121 222233333
Q ss_pred HHHHHHHhhhC--CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHH--HHHHcCCchHHHHHHHH
Q 038373 249 FLYFEIMKNDY--GIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWE-ALRN--FAQIHGDVELEDRAEEL 322 (475)
Q Consensus 249 ~~~~~~m~~~~--g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~-~li~--~~~~~g~~~~a~~~~~~ 322 (475)
.+.+..+.+.. ....+...+..+...+...|+.++|.+++++. ...||..... .++. .....++.+.+.+..+.
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 34555554321 11137788899999999999999999999998 5456654310 1222 22334666666777777
Q ss_pred HhccCCCCh--hh-hccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcccccc
Q 038373 323 LGDLDPSKA--IV-DKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHD 394 (475)
Q Consensus 323 l~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~ 394 (475)
..+..|++. .. +.+ .....+.|++++|.+.|+.-......||...+.++
T Consensus 325 ~lk~~p~~~~~~ll~sL-----------------------g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 325 QAKNVDDKPKCCINRAL-----------------------GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred HHHhCCCChhHHHHHHH-----------------------HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 666666665 21 111 11123367799999999954444456887665543
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.86 E-value=1.4e-06 Score=95.00 Aligned_cols=237 Identities=12% Similarity=0.033 Sum_probs=163.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
.+...+..+...+.+.|++++|+..+++.....|+...+..+-.++...|+.++|...++++.+.. +.+...+..+..+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~ 159 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQA 159 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345567778888999999999999999876655544337777778888999999999999998864 3355566667777
Q ss_pred HHHcCCHHHHHHHHHh----------------------------------------------ccc-----CCHH-----H
Q 038373 173 YGKCCNTRLARKVFDQ----------------------------------------------LRK-----RNLS-----S 196 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~----------------------------------------------m~~-----~~~~-----t 196 (475)
+.+.|..++|.+.++. +.+ |+.. .
T Consensus 160 l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 7777776665555542 221 1110 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC--CHHHHHHHHH
Q 038373 197 WHLMISGYAANGQGADGLMLFEQMRKTGPH-PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP--GIEHYIAIIK 273 (475)
Q Consensus 197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~y~~li~ 273 (475)
+...+..+...|++++|+..|+++.+.+-. |+..-. .+..++...|+.++|..+|+.+.......+ ....+..|..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 111133456778999999999999887632 443222 246688899999999999998873311111 1344667777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-------------C---HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 274 VLGSAGHLIEAEEFVERM-PFEP-------------T---VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 274 ~~~~~g~~~~A~~~~~~m-~~~p-------------~---~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
++.+.|++++|.++++++ ...| + ...+..+...+...|+.++|.+.++.+.+..|...
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 889999999999999988 2223 2 12344556678888999888888888877777664
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.81 E-value=1.9e-07 Score=94.14 Aligned_cols=223 Identities=12% Similarity=0.026 Sum_probs=143.3
Q ss_pred HHHHHcCChHHHHHHHHhcccCC-----------------------------------CCHHHHHHHHHHHhccCCHHHH
Q 038373 103 LSLCKEGKVREAIEYMGQDASAS-----------------------------------AGYDVFSSLLDSCGNLKSIEMG 147 (475)
Q Consensus 103 ~~~~~~g~~~~A~~l~~~~~~~~-----------------------------------p~~~t~~~ll~~~~~~~~~~~a 147 (475)
.+|-..+++++|.++|+...+.. -.+.||-++-++|.-.++-+.|
T Consensus 361 rayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~A 440 (638)
T KOG1126|consen 361 RAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTA 440 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHH
Confidence 35666778888888886432211 2345666666666667777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHH---HHHHHHhcCChHHHHHHHHHHHHcC
Q 038373 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHL---MISGYAANGQGADGLMLFEQMRKTG 224 (475)
Q Consensus 148 ~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~---li~~~~~~g~~~~A~~l~~~M~~~g 224 (475)
.+.|++..+.. +...++|+-+-+-+.-...+|.|...|..-...|...||+ |--.|.+.++++.|+--|+...+
T Consensus 441 ik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~-- 517 (638)
T KOG1126|consen 441 IKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE-- 517 (638)
T ss_pred HHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--
Confidence 77777766543 2266777777777777777777777777766666665555 34557777777777777777665
Q ss_pred CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-H
Q 038373 225 PHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEV-W 300 (475)
Q Consensus 225 ~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t-~ 300 (475)
+.| |.+....+...+-+.|+.|+|.+++++.. -+.| |...--.-...+.-.++.++|+..++++ .+.|+..+ |
T Consensus 518 INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~ 594 (638)
T KOG1126|consen 518 INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVF 594 (638)
T ss_pred CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHH
Confidence 334 45555566666667777778877777765 2333 2222223344466677778888887777 44555444 4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 301 EALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 301 ~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
-.|-..|.+.|+.+.|..-+....+++|.+.
T Consensus 595 ~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 595 ALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 4444577777777777666666777776654
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=98.79 E-value=1.9e-06 Score=90.47 Aligned_cols=196 Identities=7% Similarity=-0.129 Sum_probs=144.4
Q ss_pred CChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038373 109 GKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD 187 (475)
Q Consensus 109 g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~ 187 (475)
+++++|...+++.....| +...+..+-..+...|++++|...+++..+.. +.+...+..+-..|...|+.++|...|+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 457899999999877666 45567777777888999999999999998875 4457788889999999999999999999
Q ss_pred hccc--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC
Q 038373 188 QLRK--RNL-SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP 263 (475)
Q Consensus 188 ~m~~--~~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p 263 (475)
+..+ |+- ..+..+...+...|++++|...+++..... .|+ ...+..+-.++...|+.++|...+..+... .|
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~ 472 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EI 472 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cc
Confidence 8764 432 234445556777899999999999987653 343 445677777888999999999999887632 34
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCc
Q 038373 264 G-IEHYIAIIKVLGSAGHLIEAEEFVERM----PFEPTVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 264 ~-~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~li~~~~~~g~~ 313 (475)
+ ....+.|-..|+..| ++|...++.+ ...++..-+..++. .-.|+-
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~--~~~g~~ 523 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVL--VAHGEA 523 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHH--HHHhhh
Confidence 3 344556666778888 4777766666 33344444444444 445664
No 44
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.64 E-value=4.1e-08 Score=61.52 Aligned_cols=35 Identities=29% Similarity=0.574 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK 229 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 229 (475)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.58 E-value=5.9e-06 Score=89.43 Aligned_cols=332 Identities=13% Similarity=0.059 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGY--DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
.|...| -..+.|+++.|++.|++.....|+. ..+ .++..+...|+.++|..+++...... .......-++...|.
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~ 113 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Confidence 344444 4679999999999999988777775 244 88888889999999999999987211 223344444466888
Q ss_pred HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373 175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 251 (475)
..|++++|.++|+++.+ | |...+..++..|...|+.++|++.+++.... .|+...|..++..+...++..+|.+.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 88999999999999974 3 4567778889999999999999999998774 56766775555555456666669999
Q ss_pred HHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHH------HHHHHHH-----HHcCCchHHH
Q 038373 252 FEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERMP--FEPTVEVW------EALRNFA-----QIHGDVELED 317 (475)
Q Consensus 252 ~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~t~------~~li~~~-----~~~g~~~~a~ 317 (475)
++++.+. .| +...+..++..+.+.|-...|.++..+-+ +.+...-| ..+|..- ....++..++
T Consensus 192 ~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 192 SSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999843 46 46677899999999999999999988763 22222111 0111100 0122344556
Q ss_pred HHHHHHhccCCC-ChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCc-ccCCccccccc
Q 038373 318 RAEELLGDLDPS-KAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGY-VPDTRYVLHDI 395 (475)
Q Consensus 318 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~-~Pd~~t~~~~l 395 (475)
+++..+..+... +..|.. .+...-+. + ..+......+++.++++.++.|+..|. .|+-+- -.+-
T Consensus 269 ~ala~~~~l~~~~~~~p~~--------~~~~~~~~----~-Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~-~a~a 334 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEA--------QADYQRAR----I-DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR-RWAA 334 (822)
T ss_pred HHHHHHHHHHhhccCCCcc--------chHHHHHH----H-HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH-HHHH
Confidence 666665553310 000100 00000000 0 000112335679999999999998885 476321 1122
Q ss_pred cHHHHHHhhhhhhHHHHHHhhcc----cCCCCC--chheeccccccccccchhHHHhhhcC
Q 038373 396 DEEAKEKALQYHSERLAIAYGLI----STPPRM--PLRIIKNLRICGDCHNAIKIMSKIVG 450 (475)
Q Consensus 396 ~~~~~~~~l~~~~~~l~~~~~~~----~~~~~~--~~~ii~~~~~~g~~~~A~~~~~~m~~ 450 (475)
+++.....-......+...+.-- ..+... ...+...|...|+.++|..+++++..
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 22222111111111121111100 011111 23578899999999999999999986
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.53 E-value=0.00013 Score=70.02 Aligned_cols=223 Identities=11% Similarity=0.011 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASA--SAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+..|..-..+--+.|+.+.|-.++.+.-+. .++...+-+.-......|+.+.|..-...+.+.+ ..+..+......+
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~ 196 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRA 196 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence 334444444555556666665555544332 1233333344444445555555555555554444 3344445555555
Q ss_pred HHHcCCHHHHHHHHHhcccC---------------------------------------------CHHHHHHHHHHHHhc
Q 038373 173 YGKCCNTRLARKVFDQLRKR---------------------------------------------NLSSWHLMISGYAAN 207 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~~---------------------------------------------~~~tyn~li~~~~~~ 207 (475)
|.+.|++.+...+...|.+. +...-.+++.-+.+.
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 55555555555555555321 233344556667788
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038373 208 GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEF 287 (475)
Q Consensus 208 g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~ 287 (475)
|+.++|.++..+-.+.+..|+-.++ -.+.+.++.+.-.+..+.-.+.++-.| ..+.+|=..|.+.+.+.+|.+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred CChHHHHHHHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888888887777763332 355566777666666666665666666 4578888889999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 038373 288 VERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLG 324 (475)
Q Consensus 288 ~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~ 324 (475)
|+.- ...|+..+|+-+-+++.+.|+.+.|.++.+.-.
T Consensus 351 leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 351 LEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 9977 778999999999999999999988888766544
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.51 E-value=5.6e-05 Score=72.88 Aligned_cols=91 Identities=9% Similarity=-0.130 Sum_probs=47.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhc
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAAN 207 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~ 207 (475)
|..+-..+...|+.++|...|....+.. ..+...|+.+-..|...|++++|...|+...+ | +..+|..+...|...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3334444455555555555555555443 23445555555555555555555555555432 2 234555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 038373 208 GQGADGLMLFEQMRK 222 (475)
Q Consensus 208 g~~~~A~~l~~~M~~ 222 (475)
|++++|++.|+.-.+
T Consensus 146 g~~~eA~~~~~~al~ 160 (296)
T PRK11189 146 GRYELAQDDLLAFYQ 160 (296)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 48
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.50 E-value=1.7e-05 Score=75.80 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=147.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFV-KDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~Li~~ 172 (475)
+....--+.+++...|+.+.++.-...... |.......+-..+....+-+.+..-+.+....+.. .+..+.-..-.+
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~--~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIKKSSS--PELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS-TTSS--CCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhccCCC--hhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 344555677788888988876655544332 66665544444444334444444444333333323 233333333346
Q ss_pred HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccCCHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA----SAEAVKEG 248 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~----~~g~~~~a 248 (475)
|...|++++|.++++.- .+.......|..|.+.++++.|.+.++.|.+. ..|.+ ...|..++. -...+.+|
T Consensus 112 ~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp HCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHH
Confidence 77789999999998775 56667778899999999999999999999874 34544 333444433 23468999
Q ss_pred HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCc-hHHHHHHHHHhc
Q 038373 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDV-ELEDRAEELLGD 325 (475)
Q Consensus 249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~-~~a~~~~~~l~~ 325 (475)
..+|+++.+ .+.++..+.|.+..++...|++++|.+++.+. ...| |..+...+|......|+. +.+++..+.+..
T Consensus 187 ~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 187 FYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999985 45577888999999999999999999999886 3233 455555677766777776 556677777766
Q ss_pred cCCCCh
Q 038373 326 LDPSKA 331 (475)
Q Consensus 326 ~~~~~~ 331 (475)
..|...
T Consensus 265 ~~p~h~ 270 (290)
T PF04733_consen 265 SNPNHP 270 (290)
T ss_dssp HTTTSH
T ss_pred hCCCCh
Confidence 655543
No 49
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.49 E-value=1.9e-07 Score=58.06 Aligned_cols=34 Identities=24% Similarity=0.586 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373 194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP 227 (475)
Q Consensus 194 ~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 227 (475)
+.|||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=4.9e-05 Score=70.86 Aligned_cols=214 Identities=14% Similarity=0.068 Sum_probs=154.3
Q ss_pred HcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHH
Q 038373 107 KEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSA-FVK--DVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 107 ~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~Li~~~~k~g~~~~A 182 (475)
-..+.++|.++|-+|....|..+- --+|-+.|-+.|.++.|.++|+-+.++- ..- -....--|-.=|.+.|-+|.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 357889999999999884443332 3456677888899999999999988742 111 123344566778999999999
Q ss_pred HHHHHhcccCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHH
Q 038373 183 RKVFDQLRKRNLS---SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE----TFLVVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 183 ~~~f~~m~~~~~~---tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~----t~~~li~~~~~~g~~~~a~~~~~~m 255 (475)
+.+|....+-+.. .--.|+..|-...+|++|+++-.++...|-++..+ -|.-|-.......+++.|..++...
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998874444 56678999999999999999999998876665443 3444555555677889999988877
Q ss_pred hhhCCCcCCHH-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 256 KNDYGIVPGIE-HYIAIIKVLGSAGHLIEAEEFVERM-PFEPTV--EVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 256 ~~~~g~~p~~~-~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
.+ ..|+.+ .--.+=+.+...|+++.|.+.++.. .-.|+. .+-..|..+|...|+.+.....+...
T Consensus 207 lq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 207 LQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred Hh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 63 234332 2224446788999999999999988 334554 45677888999999986554444433
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=6.8e-06 Score=83.16 Aligned_cols=192 Identities=13% Similarity=-0.015 Sum_probs=155.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL- 169 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L- 169 (475)
+-.+.+|.++=++|.-+++.+.|++.|++.....| ..++|+-+-.-+.....+|.|...|+..+ ..|...||+.
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwY 493 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWY 493 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHH
Confidence 45578999999999999999999999999888666 66778777777788889999999998776 4566667665
Q ss_pred --HHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 170 --IEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 170 --i~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
--.|.|.++++.|+--|....+ | +.+.-..+...+-+.|+.++|+++|++.....-+ |..+---....+...++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcc
Confidence 5579999999999999998764 3 6777777888899999999999999998764322 34444444556667899
Q ss_pred HHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 245 VKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.++|.+.+++++ .+.|+ ...|-.|...|-+.|+.+.|+.-|.-+
T Consensus 573 ~~eal~~LEeLk---~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A 617 (638)
T KOG1126|consen 573 YVEALQELEELK---ELVPQESSVFALLGKIYKRLGNTDLALLHFSWA 617 (638)
T ss_pred hHHHHHHHHHHH---HhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence 999999999998 46675 567788889999999999999888666
No 52
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.42 E-value=0.00013 Score=70.29 Aligned_cols=204 Identities=10% Similarity=-0.104 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~ 173 (475)
...|..+-..|.+.|+.++|...|++.....|+ ...|+.+-..+...|++++|.+.|+...+.. .-+..++..+..+|
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 455777777899999999999999987776664 5679999999999999999999999998764 33567888899999
Q ss_pred HHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373 174 GKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 251 (475)
...|++++|.+.|+...+ |+-.........+...++.++|.+.|.+.... ..|+...+ .+. ....|++.++ +.
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~~-~~ 217 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISEE-TL 217 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCHH-HH
Confidence 999999999999998653 43221111122234567899999999775543 23333222 222 2235565544 35
Q ss_pred HHHHhhhCCCcC-----CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHH
Q 038373 252 FEIMKNDYGIVP-----GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALR 304 (475)
Q Consensus 252 ~~~m~~~~g~~p-----~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li 304 (475)
+..+.+.....+ ....|..|-..|.+.|+.++|...|++. ... ||.+-+...+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 555552211111 2356888889999999999999999987 323 4766665543
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=2.9e-05 Score=72.36 Aligned_cols=226 Identities=14% Similarity=0.061 Sum_probs=176.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcC
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELN-NKLIEMYGKCC 177 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~Li~~~~k~g 177 (475)
+-|-.+|.+-|.+.+|.+.|+......|-+.||--|-++|.+..+.+.|..++.+-.+. .|-.+|| .-+-..+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 56677899999999999999987776788889999999999999999999999988765 4555554 44556777789
Q ss_pred CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373 178 NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI 254 (475)
Q Consensus 178 ~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 254 (475)
+.++|.+++++..+ -|+.+-..+-.+|.-.++++-|++.++++.+.|+. +...|+.+--+|.-.+.+|-+.--|..
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 99999999998764 26667777788899999999999999999999986 778888888888889999998888776
Q ss_pred HhhhCCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373 255 MKNDYGIVPG--IEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP 328 (475)
Q Consensus 255 m~~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~ 328 (475)
...- --.|+ ..+|-.|=......|++.-|.+.|+-- .-.-+...+|.|--.-.+.|+++.|...+..-....|
T Consensus 384 Alst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 384 ALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 6532 22233 223555555667789999999999876 3234567888887777889999776665555444433
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.5e-06 Score=79.13 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=160.3
Q ss_pred HHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHH-hccCCHHHHHHHHHHHHHcCC--CCCHHHH------------
Q 038373 103 LSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSC-GNLKSIEMGKRVHELLRTSAF--VKDVELN------------ 166 (475)
Q Consensus 103 ~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~-~~~~~~~~a~~~~~~m~~~g~--~p~~~~~------------ 166 (475)
.++-+-.+.+++++-.......| |+.--+-+.+.++ -...++++|..+|+++.++.- --|..+|
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34445556666666555554444 4433333444333 345677777777777776621 0133333
Q ss_pred -------------------HHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038373 167 -------------------NKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224 (475)
Q Consensus 167 -------------------~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g 224 (475)
.++-+-|+-.++.++|...|++..+ | -...|+.|-+-|....+...|++-++...+-.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 3444555666778889999987664 3 45689999999999999999999999987742
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 038373 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWE 301 (475)
Q Consensus 225 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~ 301 (475)
+.|-..|-.|-.+|.-.+...-|.-.|++.. .++| |...|.+|=+.|.+-+++++|.+.|.+. .-.-+...+.
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 3477899999999999999999999998876 5667 7899999999999999999999999988 2134558888
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhc
Q 038373 302 ALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
.|-+.|.+.++.++|...++...+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999888877776654
No 55
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.37 E-value=0.00012 Score=79.52 Aligned_cols=196 Identities=10% Similarity=-0.013 Sum_probs=142.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---------CHHHHHHHHHHH
Q 038373 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR---------NLSSWHLMISGY 204 (475)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---------~~~tyn~li~~~ 204 (475)
-|-++...++..++.+.|+.|...|.+.-.++--++.++|...++.++|..+|.+.... ++.....|..+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 34466777888888888888888886655667888888888888888888888876421 333457788888
Q ss_pred HhcCChHHHHHHHHHHHHcC-------------CCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHH
Q 038373 205 AANGQGADGLMLFEQMRKTG-------------PHPDKETF-LVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYI 269 (475)
Q Consensus 205 ~~~g~~~~A~~l~~~M~~~g-------------~~pd~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~ 269 (475)
...+++++|..+++++.+.- ..||-..+ ..++..+...|++.+|++.++.+... .| |.....
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~ 454 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLRI 454 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHH
Confidence 88888888888888888731 11233333 34556677888888888888888732 34 667778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373 270 AIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI 332 (475)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~ 332 (475)
.+-+.+...|+..+|++.++.. ...|+ ..+.......+...|+++.|+...+.+.+..|+...
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 8888888888888888888666 44554 344445556667778888888888777777776653
No 56
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.35 E-value=4e-07 Score=55.25 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMRKTGP 225 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~ 225 (475)
+|||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.34 E-value=0.00026 Score=67.88 Aligned_cols=277 Identities=15% Similarity=0.068 Sum_probs=197.3
Q ss_pred HHHHHHHH--cCChHHHHHHHHhcccCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 100 VNLLSLCK--EGKVREAIEYMGQDASASAGYD-VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 100 ~li~~~~~--~g~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
.+..++.+ .|+|.+|.++..+-...++.+. .|-.-..+--..|+.+.+.+++.+..+.--.++..++-+........
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 34445443 7899999999987655454443 37777777888999999999999998874378888888999999999
Q ss_pred CCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHccCCHH
Q 038373 177 CNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-------ETFLVVFAACASAEAVK 246 (475)
Q Consensus 177 g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-------~t~~~li~~~~~~g~~~ 246 (475)
|+...|..-.++.. -++...-.....+|.+.|++.+.+.++..|.+.|+--|. .+|+.++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999998887654 457889999999999999999999999999999977664 58899999988888888
Q ss_pred HHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373 247 EGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 247 ~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
.-...|+..-. ..+-+...-.+++.-|.++|+.++|.++..+- +-..|.. .-.+ -.+.+-++.+.-.++.+....
T Consensus 247 gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~-~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL-IPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH-HhhcCCCCchHHHHHHHHHHH
Confidence 87778888774 34445556688999999999999999998876 3233443 1122 234455666544555555444
Q ss_pred cCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccHHHHHHhh
Q 038373 326 LDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAKEKAL 404 (475)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~~~~l 404 (475)
-.|++... . .+...-..+++.|.+|.+.|+. .-...|+..+|.-.-+.+.+.+..
T Consensus 323 ~h~~~p~L--~--------------------~tLG~L~~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 323 QHPEDPLL--L--------------------STLGRLALKNKLWGKASEALEA--ALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred hCCCChhH--H--------------------HHHHHHHHHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHcCCh
Confidence 33333211 0 0000111225568899888884 334678888876655555444443
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.26 E-value=0.00023 Score=72.45 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=146.0
Q ss_pred CCCHHHH-HHHHHHHHHcCChHHHHHHHHhccc-----CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHc----
Q 038373 92 NAQLESL-DVNLLSLCKEGKVREAIEYMGQDAS-----ASAGYD----VFSSLLDSCGNLKSIEMGKRVHELLRTS---- 157 (475)
Q Consensus 92 ~~~~~~~-n~li~~~~~~g~~~~A~~l~~~~~~-----~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~---- 157 (475)
.|.+.+. +.+-..|...+++++|..+|+++.. .|++.. +++.|-.+|.+.|++++|...++...+-
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 4554432 3456678899999999999987543 343333 3666777899999999998888766432
Q ss_pred -CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHhccc-------C-C--H-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373 158 -AF-VKDVE-LNNKLIEMYGKCCNTRLARKVFDQLRK-------R-N--L-SSWHLMISGYAANGQGADGLMLFEQMRKT 223 (475)
Q Consensus 158 -g~-~p~~~-~~~~Li~~~~k~g~~~~A~~~f~~m~~-------~-~--~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~ 223 (475)
|. .|.+. .++.+...|+..+++++|..++..-.+ + + + -+|+.|-..|-..|++++|.++|++....
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 22 23333 355667778889999999998875431 2 3 1 28999999999999999999999987652
Q ss_pred -----C-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh---hhCCCc-CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 224 -----G-PHP-DKETFLVVFAACASAEAVKEGFLYFEIMK---NDYGIV-PG-IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 224 -----g-~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~---~~~g~~-p~-~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
| ..+ ....++-|-.+|.+.+..++|.++|.+-. ...|.. || ..+|..|...|.+.|++++|.++.+..
T Consensus 397 ~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 397 LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 122 24577888899999999999999887543 223332 33 568899999999999999999998766
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.22 E-value=0.00078 Score=69.32 Aligned_cols=220 Identities=16% Similarity=0.180 Sum_probs=154.4
Q ss_pred HHHHcCChHHHHHHHHhcccCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----C
Q 038373 104 SLCKEGKVREAIEYMGQDASASAGYDVF-SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC-----C 177 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~-----g 177 (475)
.+.+.|++++|++.+..-...-+|..++ ...-..+.+.|+.++|..+|..+++.+ +.|..-|..|..+.+-. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 4678899999999998755555777664 555667788999999999999999886 44555556666665332 2
Q ss_pred CHHHHHHHHHhccc----------------------------------CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 178 NTRLARKVFDQLRK----------------------------------RNL-SSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 178 ~~~~A~~~f~~m~~----------------------------------~~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
+.+...++|+++.+ +++ .+++.|-.-|....+.+-..+++.+...
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~ 171 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVN 171 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 56777788887642 122 2566666666655555555556655543
Q ss_pred c----C----------CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHH
Q 038373 223 T----G----------PHPDK--ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 223 ~----g----------~~pd~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~ 285 (475)
. | -.|.. .|+..+-..|...|++++|.++.+... ...|+ +..|..--..|-+.|++++|.
T Consensus 172 ~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 172 SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 2 1 12344 255666777888999999999999887 34565 567777788899999999999
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373 286 EFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD 327 (475)
Q Consensus 286 ~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~ 327 (475)
+.++.. .+ .-|-..-+--...+.+.|+++.|++.+.++..-.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 988877 22 2466666777788889999988888888876544
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.00028 Score=68.55 Aligned_cols=186 Identities=12% Similarity=0.010 Sum_probs=138.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038373 141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLF 217 (475)
Q Consensus 141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l~ 217 (475)
.|++++|.+.|.+.+...-.-....||+=+ .+-+.|++++|+..|-.+. ..++...--+.+.|-...+...|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 378999999999988665333333444332 3566799999999987664 346666666777888888899999987
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038373 218 EQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP 295 (475)
Q Consensus 218 ~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p 295 (475)
-+. ..+.| |.....-|-..|-+.|+-..|.+.+..-. + -+..+..|..=|-.-|....-.++|..+|++. -++|
T Consensus 582 ~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsy-r-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 582 MQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-R-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-c-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 554 34555 67788889999999999999999887655 2 34457777777888888888899999999998 5789
Q ss_pred CHHHHHHHHHHH-HHcCCchHHHHHHHHHhccCCCCh
Q 038373 296 TVEVWEALRNFA-QIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 296 ~~~t~~~li~~~-~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
+.+-|..||..| .+.|+...|.+.+....+-.|.+.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 999999999755 568999666655555555445543
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00081 Score=60.14 Aligned_cols=196 Identities=15% Similarity=0.053 Sum_probs=118.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhc
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAAN 207 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~ 207 (475)
..-|--+|...|+...|..-++..++.. +.+..++..+-..|-+.|..+.|.+-|+.-.. | +-..-|..-.-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344445666666666666666666654 34455666666667777777777776665431 2 333444444456777
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHH
Q 038373 208 GQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 208 g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~ 285 (475)
|++++|...|++-...---|. ..||..+.-+..+.|+.+.|++.|..-.+ ..|+ ..+.-.+-....+.|+.-.|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777665422221 24666666566677777777777776652 2332 334556677777777777777
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 286 EFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 286 ~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
.++++. ...++..+.-..|..-...|+.+.+.+.-..|....|..
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 777776 223566665556666666777766666655665555443
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=5e-05 Score=70.80 Aligned_cols=207 Identities=10% Similarity=0.029 Sum_probs=165.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038373 88 PLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFS-SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELN 166 (475)
Q Consensus 88 ~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 166 (475)
.+...|-+-||-.|-.+|.+-.+++.|+.+|.+.....|-.+||- .+-+.+-..++.++|.++|++..+.. .-++...
T Consensus 249 sL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEai 327 (478)
T KOG1129|consen 249 SLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAI 327 (478)
T ss_pred HhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceee
Confidence 344577888899999999999999999999999988789889874 44455667789999999999998864 4566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHc
Q 038373 167 NKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE--TFLVVFAACAS 241 (475)
Q Consensus 167 ~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--t~~~li~~~~~ 241 (475)
.++-..|.-.++.+-|.+.+.++.+ .+-..|+.+--+|.-.+++|-++--|++....--.|+.. .|-.|-.....
T Consensus 328 Acia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~ 407 (478)
T KOG1129|consen 328 ACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT 407 (478)
T ss_pred eeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe
Confidence 6777778888999999999998775 456689999889999999999999999887765556543 45566666678
Q ss_pred cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 038373 242 AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTV 297 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 297 (475)
.|++..|.+.|+..... . .-....+|.|--.-.+.|++++|..+++.. .+.|+.
T Consensus 408 iGD~nlA~rcfrlaL~~-d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 408 IGDFNLAKRCFRLALTS-D-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred ccchHHHHHHHHHHhcc-C-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 89999999999887632 2 224677888888889999999999999876 334543
No 63
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00037 Score=68.06 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHH
Q 038373 129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYA 205 (475)
Q Consensus 129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~ 205 (475)
.|..++-+-|+-.++-++|...|++.++.+ +.....|+-+-+-|....+...|..-++... .+|-..|-.|-.+|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 455566666666677777777777777665 4445666666667777777777777776544 246667777777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 038373 206 ANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A 284 (475)
-.+...=|+-.|++-.. ++| |...|.+|-.+|.+.+++++|.+.|.... . .-+.+...|..|-+.|-+-++..+|
T Consensus 410 im~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai-~-~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI-L-LGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH-h-ccccchHHHHHHHHHHHHHHhHHHH
Confidence 77777777777776655 455 56677777777777777777777777766 2 2333456677777777777777777
Q ss_pred HHHHHhC-------CCCCCHHHHH--HHHHHHHHcCCchHHHH
Q 038373 285 EEFVERM-------PFEPTVEVWE--ALRNFAQIHGDVELEDR 318 (475)
Q Consensus 285 ~~~~~~m-------~~~p~~~t~~--~li~~~~~~g~~~~a~~ 318 (475)
...|++- |..-+..... -|-..+.+.+++++|..
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 7666544 2221211111 13345566677765554
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=0.00094 Score=62.53 Aligned_cols=185 Identities=11% Similarity=0.012 Sum_probs=83.1
Q ss_pred HHHHHHcCChHHHHHHHHhcccCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 102 LLSLCKEGKVREAIEYMGQDASASAGY------DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
=+-|-+.|.+|+|+.+-+..... ||. ...--|-.-|-..|-+|.|..+|..+.+.| +--...---|+..|-+
T Consensus 76 GnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 76 GNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHH
Confidence 33455566666666655432221 222 122233334555566666666666555433 2223334445555555
Q ss_pred cCCHHHHHHHHHhcccCCHHH--------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHH
Q 038373 176 CCNTRLARKVFDQLRKRNLSS--------WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLV-VFAACASAEAVK 246 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~t--------yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~-li~~~~~~g~~~ 246 (475)
..++++|..+-++..+-+--+ |.-|-..+....+.+.|..++.+-.+. .|+.+--++ +-+.....|+++
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchH
Confidence 556665555555444322222 222333333344455555555554442 222222222 223334455555
Q ss_pred HHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 247 EGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 247 ~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.|.+.++.+.+. +..--..+-..|..+|...|+.++...++.++
T Consensus 232 ~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 232 KAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 555555555432 22222333445555555555555555554444
No 65
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=3.5e-06 Score=52.49 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=27.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD 162 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 162 (475)
+||++|++|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 66
>PLN02789 farnesyltranstransferase
Probab=98.09 E-value=0.002 Score=62.55 Aligned_cols=210 Identities=10% Similarity=0.017 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLK-SIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~ 173 (475)
.+++.+-..+...++.++|+.+..+.....|+..| |+.--..+.+.+ +++++...++.+.+.. ..+..+|+-.--.+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 35666666778888999999999998876677765 554444455556 6899999999998775 44555676554455
Q ss_pred HHcCC--HHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCH
Q 038373 174 GKCCN--TRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA---EAV 245 (475)
Q Consensus 174 ~k~g~--~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~---g~~ 245 (475)
-+.|+ .+++..+++.+.+ +|..+|+.....+...|++++|++.++++.+.... |...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 56665 3677888877764 47889999999999999999999999999987654 566676665555544 222
Q ss_pred ----HHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc----CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc
Q 038373 246 ----KEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA----GHLIEAEEFVERM-PFE-PTVEVWEALRNFAQIH 310 (475)
Q Consensus 246 ----~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~----g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~~ 310 (475)
++..++...+. ...| |...|+-+-..|... ++..+|.+++.+. ... .+......|++.|+..
T Consensus 196 ~~~~e~el~y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 196 EAMRDSELKYTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccHHHHHHHHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 34556665555 2344 566788777777773 3446688888776 323 3567778888888753
No 67
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=6.2e-06 Score=51.10 Aligned_cols=33 Identities=9% Similarity=0.326 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 038373 129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK 161 (475)
Q Consensus 129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 161 (475)
.||+++|++|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.98 E-value=0.0052 Score=63.37 Aligned_cols=232 Identities=14% Similarity=0.108 Sum_probs=157.2
Q ss_pred CCCHHHHH-HHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHh-cc-----CCHHHHHHHHHHHH---------
Q 038373 92 NAQLESLD-VNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCG-NL-----KSIEMGKRVHELLR--------- 155 (475)
Q Consensus 92 ~~~~~~~n-~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~-~~-----~~~~~a~~~~~~m~--------- 155 (475)
-+|..+|- ..-..|.+.|+.++|...+.......|+...|-..+..+. -. .+.+.-.++++++.
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~ 113 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP 113 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch
Confidence 46666654 4445588999999999999998888898888655544443 11 23555566665553
Q ss_pred -------------------------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc------------------cC
Q 038373 156 -------------------------TSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR------------------KR 192 (475)
Q Consensus 156 -------------------------~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~------------------~~ 192 (475)
+.|+ +.+++.|-..|....+.+-..+++.... .|
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p 190 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPP 190 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCc
Confidence 3332 1356666666665555555555555542 12
Q ss_pred CHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHH
Q 038373 193 NLS--SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYI 269 (475)
Q Consensus 193 ~~~--tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~ 269 (475)
... +|.-+-..|-..|++++|++..++-.+. .|+. -.|.+-...+-+.|++++|.+..+... +.... |...-+
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar-~LD~~-DRyiNs 266 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAR-ELDLA-DRYINS 266 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hCChh-hHHHHH
Confidence 333 4455677788999999999999998874 6774 477888889999999999999999887 33332 777778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC---CCC--CH----HHHHH--HHHHHHHcCCchHHHHH----HHHHhccCCCC
Q 038373 270 AIIKVLGSAGHLIEAEEFVERMP---FEP--TV----EVWEA--LRNFAQIHGDVELEDRA----EELLGDLDPSK 330 (475)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m~---~~p--~~----~t~~~--li~~~~~~g~~~~a~~~----~~~l~~~~~~~ 330 (475)
-.+..+.++|++++|.+++...- ..| |. ..|=- --.+|.+.|+...|.+- .+.+.++..+-
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999988872 112 11 12322 23578888998776543 33444444443
No 69
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.98 E-value=0.001 Score=61.63 Aligned_cols=181 Identities=14% Similarity=-0.049 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCH-HHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFV-KDV-ELN 166 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~ 166 (475)
.....+-.+...+.+.|++++|...|++.....|+. .++..+-.++.+.|++++|...++.+.+..-. +.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 455567777778889999999999998766544542 35666777888889999999999998765311 111 234
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373 167 NKLIEMYGKC--------CNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVV 235 (475)
Q Consensus 167 ~~Li~~~~k~--------g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~l 235 (475)
..+-.+|.+. |+.++|.+.|+.+.+ |+ ...+.++..... .... .. .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------LA--------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------HH--------HHHHHH
Confidence 4444455543 677888888877753 32 222222111000 0000 00 001133
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 236 FAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 236 i~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
-..+.+.|+.++|...+....+.+.-.| ....+..+...|.+.|+.++|..+++.+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456677777777777777664432223 2456667777777777777777777766
No 70
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.97 E-value=0.002 Score=70.76 Aligned_cols=222 Identities=13% Similarity=0.127 Sum_probs=162.4
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHhccc-CCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 038373 92 NAQ-LESLDVNLLSLCKEGKVREAIEYMGQDAS-ASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE 164 (475)
Q Consensus 92 ~~~-~~~~n~li~~~~~~g~~~~A~~l~~~~~~-~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 164 (475)
.|| .+.|-.-|.-..+.+..++|.+++++... ..+- .-.|.++++.-...|.-+...++|++..+.- --..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 454 35788888888899999999999887543 2111 1235566665555577788889999887753 2356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHH-HHHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD--KETFL-VVFAA 238 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~~-~li~~ 238 (475)
+|..|...|.+.+..++|-++|+.|-++ ....|...+..+.++.+-++|.+++.+..+. -|- .+-+. -.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 7899999999999999999999999864 5568999999999999999999999887764 343 33222 22233
Q ss_pred HHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHcCCc
Q 038373 239 CASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEP--TVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 239 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p--~~~t~~~li~~~~~~g~~ 313 (475)
-.+.|+-+++..+|+.....+--+ ...|+.+|++=.+.|+.+.++.+|++. ++.| =-..|.--+..=..+|+-
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKR--tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKR--TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccc--hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 357899999999999888553333 446999999999999999999999988 3322 345677777776777876
Q ss_pred hHHHHH
Q 038373 314 ELEDRA 319 (475)
Q Consensus 314 ~~a~~~ 319 (475)
+.++.+
T Consensus 1688 ~~vE~V 1693 (1710)
T KOG1070|consen 1688 KNVEYV 1693 (1710)
T ss_pred hhHHHH
Confidence 554443
No 71
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.95 E-value=0.00015 Score=64.37 Aligned_cols=116 Identities=21% Similarity=0.218 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGN-----LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLM 200 (475)
Q Consensus 126 p~~~t~~~ll~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~l 200 (475)
.|..+|..+|..+.+ .|.++-....+..|.+-|+..|..+|+.||+.+=| |.+- -..+|+.| |
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-------F--- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-------F--- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-------h---
Confidence 456666666666643 47888888889999999999999999999998876 3322 11122111 1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHh
Q 038373 201 ISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAV-KEGFLYFEIMK 256 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~-~~a~~~~~~m~ 256 (475)
.-| -.+-+-|++|+++|+..|+.||..|+..|++.+++.+.. .+..++.-.|-
T Consensus 113 -~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 113 -MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred -ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 112 133567899999999999999999999999999776643 33344444444
No 72
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00049 Score=68.19 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
...+|+..+...++++.|..+|+++.+.+...+-.|+..|...++-.+|++++++..... .-|......-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344556666667999999999999987766666678888888999999999999988642 2366666777777889999
Q ss_pred HHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 038373 245 VKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERMPFEPT 296 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~ 296 (475)
.+.|.++.+++. ...|+ ..+|..|...|.+.|++++|+..++.++..+.
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 999999999998 45675 56999999999999999999999999975543
No 73
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.94 E-value=0.00094 Score=63.87 Aligned_cols=190 Identities=12% Similarity=0.044 Sum_probs=126.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS---AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
.|.......+...+...++-+.++.-+++..... .+.......-..+...|++++|.+++..- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3555555444333333345556666665533322 23222222223466789999999888642 46777778
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC--CHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373 169 LIEMYGKCCNTRLARKVFDQLRKR--NLS---SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE 243 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~~~--~~~---tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g 243 (475)
.|..|.+.++++.|.+.|+.|++- |.+ ...+.|+.+.-.+.+.+|.-+|+|+.+. ..++..+.|.+..+....|
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhC
Confidence 899999999999999999999854 433 2233333333345689999999998654 6788999999999999999
Q ss_pred CHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 038373 244 AVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHL-IEAEEFVERM 291 (475)
Q Consensus 244 ~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~-~~A~~~~~~m 291 (475)
++++|.+++.+..++ .| |..+...+|-.....|+- +.+.+++.++
T Consensus 216 ~~~eAe~~L~~al~~---~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 216 HYEEAEELLEEALEK---DPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp -HHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999999887633 33 344555677777777877 7788899998
No 74
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.94 E-value=0.001 Score=61.77 Aligned_cols=178 Identities=13% Similarity=0.065 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC-H---HHH
Q 038373 127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD---VELNNKLIEMYGKCCNTRLARKVFDQLRK--RN-L---SSW 197 (475)
Q Consensus 127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~-~---~ty 197 (475)
....+-.+...+.+.|+++.|...++++.+.. +.+ ..++..+..+|.+.|++++|...|+++.+ |+ . .+|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34455556666666777777777777665542 111 13455566666777777777777776642 21 1 133
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHH
Q 038373 198 HLMISGYAAN--------GQGADGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHY 268 (475)
Q Consensus 198 n~li~~~~~~--------g~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y 268 (475)
..+-.++.+. |+.++|.+.|++.... .|+.. .+..+... +... .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHH------HHHH---------HHH
Confidence 3333444433 5566666666666553 23321 11111100 0000 0000 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 269 IAIIKVLGSAGHLIEAEEFVERM-PF---EP-TVEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~m-~~---~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
-.+-..|.+.|+.++|...|++. .. .| ....|..+..++.+.|+.++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 24556789999999999999887 22 23 3568888999999999998887777766543
No 75
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.91 E-value=0.013 Score=61.95 Aligned_cols=198 Identities=16% Similarity=0.054 Sum_probs=147.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
|.+...-...+-+.-.|+.++|.+++.+..+..| +...|-+|-..|-..|+.+++...+-..--.. +.|...|-.+-+
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~lad 215 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 4444433333333444999999999999877554 55679999999999999999988776554443 557789999999
Q ss_pred HHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHccCC
Q 038373 172 MYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL----VVFAACASAEA 244 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~----~li~~~~~~g~ 244 (475)
...+.|.++.|.-.|.+..+. +...+--=+.-|-+.|+..+|.+-|.+|...-..-|..-+- .++..+-..++
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999987643 43333334566888999999999999998753322222222 34555667777
Q ss_pred HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 245 VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
-+.|.+.++....+.+-..+...++.++..|.+....+.|......+
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~ 342 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDD 342 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 78888888877655455556778899999999999999999887776
No 76
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0036 Score=61.02 Aligned_cols=198 Identities=14% Similarity=0.161 Sum_probs=147.6
Q ss_pred cCChHHHHHHHHhcccCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373 108 EGKVREAIEYMGQDASASAGYDV----FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLAR 183 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~ 183 (475)
+|++++|.+.+++... -|... ||+=|. +-..|++++|...|-.+-.. +.-++.+.--+.+.|--..+...|.
T Consensus 503 ngd~dka~~~ykeal~--ndasc~ealfniglt-~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALN--NDASCTEALFNIGLT-AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred cCcHHHHHHHHHHHHc--CchHHHHHHHHhccc-HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 6889999999998776 33322 444333 45678999999887665321 1345666667778888888889999
Q ss_pred HHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCC
Q 038373 184 KVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYG 260 (475)
Q Consensus 184 ~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g 260 (475)
+++-+... | |....+-|-.-|-+.|+-..|++..-+--+. +.-|..|.--|-.-|....-++++..+|+... =
T Consensus 579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---l 654 (840)
T KOG2003|consen 579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---L 654 (840)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---h
Confidence 98876653 3 6677888889999999999999876553321 33356666667777777888899999998775 5
Q ss_pred CcCCHHHHHHHHH-HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCc
Q 038373 261 IVPGIEHYIAIIK-VLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 261 ~~p~~~~y~~li~-~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~ 313 (475)
+.|+..-|..||. .+.+.|++.+|+++++.. .+.-|+....-|+..+...|..
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 7899999998875 456789999999999998 5666888888888877777654
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0046 Score=55.43 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=157.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
.--|--+|.+.|+...|..-+++.....|+. .++..+-..|-+.|..+.|.+-|+...+.. +-+-.+.|..-..+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 3445558999999999999999988766654 468888889999999999999999998765 44567788888899999
Q ss_pred CCHHHHHHHHHhcc-cCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373 177 CNTRLARKVFDQLR-KRN----LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 177 g~~~~A~~~f~~m~-~~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 251 (475)
|++++|...|++-. .|+ ..||..+.-+..+.|+.+.|.+.|++-.+..-. ...+...+..-.-+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 99999999998754 453 348999988899999999999999998874321 345777788888899999999999
Q ss_pred HHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 038373 252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWE 301 (475)
Q Consensus 252 ~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~ 301 (475)
++..... ..++...--..|..--+.|+.+.|.+.=..+ ..-|...-|.
T Consensus 196 ~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 196 LERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 9998843 3377777777777778888888777665444 2224444443
No 78
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.86 E-value=0.00093 Score=70.82 Aligned_cols=222 Identities=14% Similarity=0.044 Sum_probs=96.1
Q ss_pred HHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373 105 LCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLAR 183 (475)
Q Consensus 105 ~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~ 183 (475)
+-..++.+.|.++|......-|+-++ |--+....-..+.+.+|...+.+..... ..+..+.+-+-+.|.+...+..|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccc
Confidence 33444566666666655444454443 3222211112244555555555554432 233333333444555555555555
Q ss_pred HHHHhccc-----CCHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 038373 184 KVFDQLRK-----RNLSSWHLMISGYA------------ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVK 246 (475)
Q Consensus 184 ~~f~~m~~-----~~~~tyn~li~~~~------------~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~ 246 (475)
+-|+.+-+ +|..+--+|-+.|. ..+..++|+++|.+.++... -|...-|.+--.++..|+++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCch
Confidence 53333321 12222212222111 11234455555555444221 13344444444455555555
Q ss_pred HHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373 247 EGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM----PFEPTVEVWEALRNFAQIHGDVELEDRAEEL 322 (475)
Q Consensus 247 ~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 322 (475)
+|..+|.++.+. .. -+..+|-.|-+.|..+|++..|.++|+.- .-+-++...+.|-.++-..|.+.+|.++...
T Consensus 664 ~A~dIFsqVrEa-~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 664 EARDIFSQVREA-TS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHHHHHHH-Hh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 555555555532 11 11223444555555555555555555443 2223444444455555555555444444444
Q ss_pred HhccCCCC
Q 038373 323 LGDLDPSK 330 (475)
Q Consensus 323 l~~~~~~~ 330 (475)
-..+.|.+
T Consensus 742 a~~~~p~~ 749 (1018)
T KOG2002|consen 742 ARHLAPSN 749 (1018)
T ss_pred HHHhCCcc
Confidence 44444433
No 79
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.84 E-value=1.8e-05 Score=47.78 Aligned_cols=27 Identities=37% Similarity=0.433 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK 191 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~ 191 (475)
|||+||++|++.|++++|.++|++|.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 344444444444444444444444443
No 80
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.82 E-value=0.002 Score=70.75 Aligned_cols=199 Identities=12% Similarity=0.173 Sum_probs=157.8
Q ss_pred CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-C-HHH
Q 038373 124 ASAGYD-VFSSLLDSCGNLKSIEMGKRVHELLRTS-AFV---KDVELNNKLIEMYGKCCNTRLARKVFDQLRKR-N-LSS 196 (475)
Q Consensus 124 ~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~---p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~-~-~~t 196 (475)
..||.. .|-.-|.-..+.++++.|+++.++.+.. ++. --..+|.++++.-.--|.-+...++|++..+- | ...
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence 346654 4777777788999999999999998764 222 12457888888888888999999999998763 4 357
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC---HHHHHHHHH
Q 038373 197 WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG---IEHYIAIIK 273 (475)
Q Consensus 197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~y~~li~ 273 (475)
|..|..-|.+.+.+++|-++|++|.+. +.-....|...+..+.+..+-+.|..++.+.. .+.|- +......+.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL---~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRAL---KSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHH---hhcchhhhHHHHHHHHH
Confidence 999999999999999999999999875 33466789999999999999999999998877 23444 334566677
Q ss_pred HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 274 VLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 274 ~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
.-.++|+-+.+..+|+.. ....-...|+..|+.-.++|+.+.+...++....+
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 788999999999999988 22235668999999999999997777777766554
No 81
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.81 E-value=0.015 Score=59.59 Aligned_cols=234 Identities=18% Similarity=0.167 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
...|-+-+.-..++..+++|..+|.+.....|+...|..-++.---.++.++|.+++++.++. +.--...|--+-..|-
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 345555666666666777777777666555566666555444444556677777777666554 1222334444445555
Q ss_pred HcCCHHHHHHHHHhcc--cCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373 175 KCCNTRLARKVFDQLR--KRN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~--~~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 251 (475)
+.++++.|+..|..=. .|+ +..|-.|..-=-+.|++-+|..+|+.-...+. -|..-|...|..=.+.|..+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHH
Confidence 5666666666655432 243 34676666666677788888888877766543 2677788888888888888888776
Q ss_pred HHHHhhhC----------------------------CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038373 252 FEIMKNDY----------------------------GIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWE 301 (475)
Q Consensus 252 ~~~m~~~~----------------------------g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~ 301 (475)
.....+++ .+.-|..+.-++-..|-...++++|.+.|.+. ...| +..+|.
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence 65555331 12333444445555666667889999999987 3344 467899
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 302 ALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
-+...+.++|.-+.-.+++..+..-+|..
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 99999999998776677777776665543
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.79 E-value=0.0066 Score=59.97 Aligned_cols=195 Identities=12% Similarity=-0.002 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhccc---CCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH--
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDAS---ASAGYDVFSS-LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK-- 168 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~---~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-- 168 (475)
...|..+-..+...|+.+++..-+..... ..++...... ....+...|++++|.++++...+.. +.|...++.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44566666677778888887666654222 1234322221 1223456799999999999988763 344444442
Q ss_pred -HHHHHHHcCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 169 -LIEMYGKCCNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 169 -Li~~~~k~g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
+....-..|..+.+.+.++.... |+ ...+..+...+...|++++|.+.+++..+.. ..+...+..+-..+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234666677777665322 22 3344555667889999999999999998853 2245677888888999999
Q ss_pred HHHHHHHHHHHhhhCCCcCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 245 VKEGFLYFEIMKNDYGIVPGI--EHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~g~~p~~--~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+++|..+++.........|+. ..|..+...+...|+.++|.+++++.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999877422222333 34567888899999999999999997
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.77 E-value=0.0089 Score=59.07 Aligned_cols=220 Identities=12% Similarity=-0.000 Sum_probs=135.9
Q ss_pred HHHHcCChHHHHHHHHhcccCCCCHH-HHHH---HHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 038373 104 SLCKEGKVREAIEYMGQDASASAGYD-VFSS---LLDSCGNLKSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCN 178 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p~~~-t~~~---ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~ 178 (475)
.+...|++++|.+++++.....|+.. .+.. ........+..+.+.+.+.. .....|+ ......+...+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 46788999999999988665456544 3332 11111223555555555544 2222343 3445566678899999
Q ss_pred HHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHccCCHHHHHHHH
Q 038373 179 TRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGP-HPDK--ETFLVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 179 ~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~--~t~~~li~~~~~~g~~~~a~~~~ 252 (475)
+++|...+++..+ .+...+..+-..|...|++++|...+++.....- .|+. ..|..+...+...|+.++|..++
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999998764 3567888999999999999999999998876432 2333 34557788889999999999999
Q ss_pred HHHhhhCCCcCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHhC-C-CCCCHHHHH--HHHHHHHHcCCchHHHHHHHH
Q 038373 253 EIMKNDYGIVPGIEHY-I--AIIKVLGSAGHLIEAEEF---VERM-P-FEPTVEVWE--ALRNFAQIHGDVELEDRAEEL 322 (475)
Q Consensus 253 ~~m~~~~g~~p~~~~y-~--~li~~~~~~g~~~~A~~~---~~~m-~-~~p~~~t~~--~li~~~~~~g~~~~a~~~~~~ 322 (475)
+.........+..... + .++.-+-..|..+.+.++ ...- + .......++ ....++...|+.+.|.+.++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9976321212222211 2 334445555544444433 2211 1 111122233 344566778888766666655
Q ss_pred Hhc
Q 038373 323 LGD 325 (475)
Q Consensus 323 l~~ 325 (475)
+..
T Consensus 290 l~~ 292 (355)
T cd05804 290 LKG 292 (355)
T ss_pred HHH
Confidence 543
No 84
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.023 Score=55.17 Aligned_cols=230 Identities=11% Similarity=0.033 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHHcC---------
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV----FSSLLDSCGNLKSIEMGKRVHELLRTSA--------- 158 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~m~~~g--------- 158 (475)
+-|+--...+-+.+...|+.++|...|++.....|+.++ |..|+. +.|+.+....+...+....
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~---~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG---QEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH---hccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 344555677777788888888888888775553354443 444443 3333333333322221110
Q ss_pred ---------------------CCCCHHHHHHH---HHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChH
Q 038373 159 ---------------------FVKDVELNNKL---IEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGA 211 (475)
Q Consensus 159 ---------------------~~p~~~~~~~L---i~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~ 211 (475)
+..|....-++ -+.+...|+.++|.--|.... .| +..+|--|+.+|...|++.
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 01111111111 123444566666666665433 33 6667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 038373 212 DGLMLFEQMRKTGPHPDKETFLVVF-AACA-SAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFV 288 (475)
Q Consensus 212 ~A~~l~~~M~~~g~~pd~~t~~~li-~~~~-~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~ 288 (475)
||.-+-++-.+. +.-+..|.+.+- ..|. ....-++|..+++.-. .+.|+ ...-+.+-..+...|+.+++..++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 766555443221 112223332220 1121 1222355666665443 34555 233456667777788888888888
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373 289 ERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP 328 (475)
Q Consensus 289 ~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~ 328 (475)
++- ...||....+.|-+.+.......++..-+..-..++|
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 776 5567888888887777766666444444443333433
No 85
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.73 E-value=0.00047 Score=54.58 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=69.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCCh
Q 038373 132 SSLLDSCGNLKSIEMGKRVHELLRTSAF-VKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQG 210 (475)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~ 210 (475)
...|..|...+++.....+|+.+++.|+ .|++.+||.++.+.++..- |- ..-.++.
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~l--------------D~---------~~ie~kl 85 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKREL--------------DS---------EDIENKL 85 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccc--------------cc---------hhHHHHH
Confidence 4456667777999999999999999999 8999999999998876321 11 1123345
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373 211 ADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241 (475)
Q Consensus 211 ~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~ 241 (475)
-+.+.+++.|...+++|+..||+.++..+.+
T Consensus 86 ~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 86 TNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 6788999999999999999999999998764
No 86
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.72 E-value=0.00031 Score=62.45 Aligned_cols=98 Identities=13% Similarity=0.280 Sum_probs=73.7
Q ss_pred HHHHHhc--ccCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 038373 183 RKVFDQL--RKRNLSSWHLMISGYAAN-----GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA------------- 242 (475)
Q Consensus 183 ~~~f~~m--~~~~~~tyn~li~~~~~~-----g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~------------- 242 (475)
...|+.. ..+|-.+|..+|..|.+. |..+-....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 456777777777777654 66677777788888888888888888888876542
Q ss_pred ---CCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCH
Q 038373 243 ---EAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHL 281 (475)
Q Consensus 243 ---g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~ 281 (475)
..-+-|.+++++|+ ++|+-||..|+..|++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 23456888999998 569999999999999999888763
No 87
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.72 E-value=0.02 Score=60.69 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=153.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
..+...|-+|-..|-+.|+.++++..+-...... -|..-|..+-.-..+.|++++|.-.|.+.++.. .++...+--=+
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers 248 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERS 248 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHH
Confidence 4566788889899999999999988764322222 344556777777777777888877777777664 34444444445
Q ss_pred HHHHHcCCHHHHHHHHHhccc--C------------------------------------------CHHHHHHHHHHHHh
Q 038373 171 EMYGKCCNTRLARKVFDQLRK--R------------------------------------------NLSSWHLMISGYAA 206 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~--~------------------------------------------~~~tyn~li~~~~~ 206 (475)
..|-+.|+...|..-|.++-+ | +...+|+++.-|.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 566666666666666555431 1 12256677777777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHH----------------------HHH----HHHHHHccCCHHHHHHHHHHHhhhCC
Q 038373 207 NGQGADGLMLFEQMRKTGPHPDKET----------------------FLV----VFAACASAEAVKEGFLYFEIMKNDYG 260 (475)
Q Consensus 207 ~g~~~~A~~l~~~M~~~g~~pd~~t----------------------~~~----li~~~~~~g~~~~a~~~~~~m~~~~g 260 (475)
..+++.|.....++.....++|..- |.. +.-++.+....+...-+......+ .
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n 407 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED-N 407 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh-c
Confidence 7777888777777766222222221 111 122233333333333333333322 4
Q ss_pred CcC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 261 IVP--GIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 261 ~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
+.| +...|.-+.++|.+.|++.+|.++|..+ +.-.+...|--+-..|...|..+.|.+.+++...+.|+..
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~ 483 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL 483 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch
Confidence 333 5667888889999999999999999988 2223566788888888888999999999998888888764
No 88
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0068 Score=60.92 Aligned_cols=231 Identities=10% Similarity=0.032 Sum_probs=149.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDAS-ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC 177 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g 177 (475)
-.-..-+-..+++.+.+++++.... .++....+..=|.++...|+-.+-..+=..|++.- +....+|-++---|.-.|
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 3444556678889999998887554 33555556666777778887766666655665542 445677888877777779
Q ss_pred CHHHHHHHHHhcccCC---HHHHHHHHHHHHhcCChHHHH----------------------------------HHHHHH
Q 038373 178 NTRLARKVFDQLRKRN---LSSWHLMISGYAANGQGADGL----------------------------------MLFEQM 220 (475)
Q Consensus 178 ~~~~A~~~f~~m~~~~---~~tyn~li~~~~~~g~~~~A~----------------------------------~l~~~M 220 (475)
+.++|++.|..-..-| -..|-..-..|+-.|..|.|+ +.|.+-
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999987654322 124555555555555544444 444333
Q ss_pred HHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC-CC---c-CCHHHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 038373 221 RKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDY-GI---V-PGIEHYIAIIKVLGSAGHLIEAEEFVERM--P 292 (475)
Q Consensus 221 ~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-g~---~-p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~ 292 (475)
. ++-| |...++-+--..-+.+.+.+|..+|....... .+ . -...+++.|=..|.|.++.++|...|++- -
T Consensus 407 ~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 407 L--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred H--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 2 2444 44445444444445677778887776554110 01 1 13445778888899999999999999877 3
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373 293 FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI 332 (475)
Q Consensus 293 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~ 332 (475)
...|..++.++--.|...|+++.|.+.+..-..+.|++..
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 3457788888877888889998777777776667777643
No 89
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0026 Score=62.81 Aligned_cols=208 Identities=11% Similarity=0.081 Sum_probs=100.2
Q ss_pred HHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 038373 106 CKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARK 184 (475)
Q Consensus 106 ~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~ 184 (475)
.-.|+.-.|.+.|+......|.... |--+-..|....+-++..+.|+...+.. +-|..+|.---.++.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3455555555555554443322222 4444445555566666666666655543 2233333333333344455666666
Q ss_pred HHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCC
Q 038373 185 VFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGI 261 (475)
Q Consensus 185 ~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 261 (475)
=|++-.. | ++..|--+--+.-+.+++++++..|++-++. +.--...||..-..+...++++.|.+.|+..+ .+
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~L 491 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---EL 491 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hh
Confidence 6655442 2 3444444444444555666666666665543 22233455555556666666666666665544 12
Q ss_pred cCC---------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHH
Q 038373 262 VPG---------IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRA 319 (475)
Q Consensus 262 ~p~---------~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~ 319 (475)
.|+ ..+--+++-.-. .+++..|.+++++. .+.| ....|-+|-..-.+.|++++|.+.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 222 111122222222 25666666666555 2222 234455555555555655443333
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.69 E-value=0.00076 Score=69.41 Aligned_cols=214 Identities=14% Similarity=0.038 Sum_probs=160.8
Q ss_pred HHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 038373 101 NLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTR 180 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~ 180 (475)
+...+...|-...|+.+|++. ..+.-+|.+|+..|+-.+|..+..+-.+. +||...|..|.+..-.---++
T Consensus 404 laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 444577788888898888764 34667788999999999999998888773 799999999999888777799
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC
Q 038373 181 LARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK-TGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDY 259 (475)
Q Consensus 181 ~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 259 (475)
+|.++++....+--..|+.++ .++++++++.+.|+.-.+ ..+ -.-||-.+=-+.-+.+++..|.+.|..-.
T Consensus 475 kawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcv--- 546 (777)
T KOG1128|consen 475 KAWELSNYISARAQRSLALLI---LSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCV--- 546 (777)
T ss_pred HHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHh---
Confidence 999999877655333444443 237899999998876444 222 23456555555667889999999988877
Q ss_pred CCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 260 GIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 260 g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
...|| ...||.|-.+|.+.|+-.+|...+.+- .+ .-+-..|-.-+....+.|.+++|.+|+..+.+|.....
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 45675 678999999999999999999999887 22 22334455555566789999999999988888765543
No 91
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.67 E-value=0.00057 Score=68.08 Aligned_cols=118 Identities=12% Similarity=0.015 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-RNL-----SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL 233 (475)
Q Consensus 160 ~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-~~~-----~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 233 (475)
.-+......+++......+++++..++-..+. |+. .|.+++|..|.+.|..++++++++.=...|+-||..|||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34555555666666666666666666655542 211 144577777777777777777777777777777777777
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc
Q 038373 234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA 278 (475)
Q Consensus 234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~ 278 (475)
.||+.+.+.|++..|.++..+|..+ +...+..|+.--+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 7777777777777777776666643 4444555555555555444
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.65 E-value=0.0021 Score=54.76 Aligned_cols=88 Identities=7% Similarity=-0.175 Sum_probs=45.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCCh
Q 038373 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQG 210 (475)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~ 210 (475)
+-.++...|++++|...|....... ..+..+|..+-.++.+.|++++|...|+...+ | +...|..+-.++.+.|+.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3344445555555555555555443 23445555555555555555555555554442 2 344555555555555555
Q ss_pred HHHHHHHHHHHH
Q 038373 211 ADGLMLFEQMRK 222 (475)
Q Consensus 211 ~~A~~l~~~M~~ 222 (475)
++|+..|++-.+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 93
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.014 Score=53.40 Aligned_cols=155 Identities=14% Similarity=0.048 Sum_probs=108.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcC
Q 038373 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANG 208 (475)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g 208 (475)
..+=+++--.|+-+....+...... ....|....++++....+.|++.+|...|.+... +|..+||.+--+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 3334445555666655555554322 2245666777788888888888888888887764 47788888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038373 209 QGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEF 287 (475)
Q Consensus 209 ~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~ 287 (475)
++++|..-|.+..+ +.| +...+|.|.-.+.-.|+.+.|+.++..... .-.-|...-..|.-..+..|++++|+++
T Consensus 149 r~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 149 RFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888887776 334 345667777777778888888888887763 2233555566777778888888888888
Q ss_pred HHhC
Q 038373 288 VERM 291 (475)
Q Consensus 288 ~~~m 291 (475)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 7654
No 94
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.61 E-value=0.00077 Score=53.37 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHhhhCCCcCCHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGP-HPDKETFLVVFAACASAE--------AVKEGFLYFEIMKNDYGIVPGIE 266 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~t~~~li~~~~~~g--------~~~~a~~~~~~m~~~~g~~p~~~ 266 (475)
|-...|..+...|++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+...++..|.. .+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 555677778888999999999999999999 999999999999987643 23455677888884 48999999
Q ss_pred HHHHHHHHHHh
Q 038373 267 HYIAIIKVLGS 277 (475)
Q Consensus 267 ~y~~li~~~~~ 277 (475)
||+.+|..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99998887765
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.008 Score=54.91 Aligned_cols=155 Identities=12% Similarity=-0.038 Sum_probs=124.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC 177 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g 177 (475)
.-+-..+-..|+-+.++.+..+..... -|....+..++...+.|++..|...+.+..... .+|..+||.+--+|-+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 334556777888888888877644322 455556778999999999999999999998765 789999999999999999
Q ss_pred CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373 178 NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI 254 (475)
Q Consensus 178 ~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 254 (475)
++++|..-|.+..+ .+-..+|.|--.|.-.|+.+.|..++..-...+.. |...-..+.-.....|++++|+.+-..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999987653 46678888888899999999999999998887644 455555666678899999999987654
Q ss_pred H
Q 038373 255 M 255 (475)
Q Consensus 255 m 255 (475)
-
T Consensus 228 e 228 (257)
T COG5010 228 E 228 (257)
T ss_pred c
Confidence 3
No 96
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0067 Score=59.94 Aligned_cols=189 Identities=10% Similarity=0.033 Sum_probs=125.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
|--+-..|.+..+.++....|+......| |+.+|..=-....-.+++++|..=|+..++.. +-+++.|--+--+..|.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 55555668888888888888887655442 33445443344444567778877777776654 34566666666677778
Q ss_pred CCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCCHHHHH--HHHHHHHccCCHH
Q 038373 177 CNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKT-----GPHPDKETFL--VVFAACASAEAVK 246 (475)
Q Consensus 177 g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g~~pd~~t~~--~li~~~~~~g~~~ 246 (475)
+++++++..|++.+++ -...||-.-..+...+++++|.+.|+.-.+- ++-.+..++. .++- +--.+++.
T Consensus 442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~ 520 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDIN 520 (606)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHH
Confidence 8888888888887753 3457888888888888888888888876552 1222222221 1111 11337788
Q ss_pred HHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 247 EGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 247 ~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+|.++++... .+.|- ...|-+|-..-...|++++|.++|++-
T Consensus 521 ~a~~Ll~KA~---e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 521 QAENLLRKAI---ELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHH---ccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888776 34442 356778888888888888888888875
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.58 E-value=0.0031 Score=53.70 Aligned_cols=89 Identities=8% Similarity=-0.071 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHh
Q 038373 199 LMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGS 277 (475)
Q Consensus 199 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~ 277 (475)
.+...+...|++++|...|+...... ..+...|..+-.++...|++++|...|+.... ..| +...+..+-..|.+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM---LDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHH
Confidence 34444455555555555555554421 11344445555555555555555555555541 222 34444455555555
Q ss_pred cCCHHHHHHHHHhC
Q 038373 278 AGHLIEAEEFVERM 291 (475)
Q Consensus 278 ~g~~~~A~~~~~~m 291 (475)
.|+.++|.+.|++.
T Consensus 105 ~g~~~eAi~~~~~A 118 (144)
T PRK15359 105 MGEPGLAREAFQTA 118 (144)
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555554
No 98
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.56 E-value=0.002 Score=63.91 Aligned_cols=124 Identities=12% Similarity=0.074 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHH
Q 038373 127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISG 203 (475)
Q Consensus 127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~ 203 (475)
+..--.+|++.+...++++.|..+++++.+.. |++ ...|...|...++-.+|.+++++..+ .|....+.-..-
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33445677778888899999999999998774 654 34577888888888899999887764 255566666677
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 204 YAANGQGADGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 204 ~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
|.+.++.+.|+++.+++.+ +.|+.. +|..|..+|.+.|+++.|...++.+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8899999999999999987 567665 99999999999999999999998775
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.53 E-value=0.02 Score=51.63 Aligned_cols=114 Identities=9% Similarity=0.012 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHH-HhcCC--hHHHH
Q 038373 141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGY-AANGQ--GADGL 214 (475)
Q Consensus 141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~-~~~g~--~~~A~ 214 (475)
.++.+++...++...+.. ..|...|..|-..|...|++++|...|++..+ | |...|..+-.++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344444444444444443 44555566666666666666666666655442 2 444555555542 44454 35666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 215 MLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 215 ~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
+++++..+.... +...+..+-..+.+.|++++|...|+.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665553221 33455555555556666666666666655
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.53 E-value=0.0027 Score=65.30 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=67.9
Q ss_pred HcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038373 107 KEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVF 186 (475)
Q Consensus 107 ~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f 186 (475)
.+..|.+|+.+++.......-.--|.-+-.-|+..|+++.|.++|.+. | .++--|++|.++|++++|.++-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHH
Confidence 344455555555544332111222677777888889999998888753 2 3667788999999999999988
Q ss_pred HhcccC--CHHHHHHHHHHHHhcCChHHHHHHHH
Q 038373 187 DQLRKR--NLSSWHLMISGYAANGQGADGLMLFE 218 (475)
Q Consensus 187 ~~m~~~--~~~tyn~li~~~~~~g~~~~A~~l~~ 218 (475)
++...| .++.|-+-..-+-++|++.+|.+++-
T Consensus 815 ~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 815 EECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 877655 34456665555666777776666653
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.50 E-value=0.0032 Score=56.71 Aligned_cols=123 Identities=11% Similarity=0.098 Sum_probs=96.7
Q ss_pred cCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCC--HHHHH
Q 038373 108 EGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM-YGKCCN--TRLAR 183 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~-~~k~g~--~~~A~ 183 (475)
.++.+++...+++..... .|...|..+-..+...|+++.|...++...+.. ..+..++..+-.+ |...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344566666666554444 456668888889999999999999999998876 4578888888886 467787 59999
Q ss_pred HHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038373 184 KVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF 232 (475)
Q Consensus 184 ~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 232 (475)
++|++..+ | +..++..+-..+.+.|++++|+..|+++.+.. .|+.--+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 99998874 3 67899999999999999999999999998753 4444444
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.49 E-value=0.0037 Score=52.30 Aligned_cols=90 Identities=9% Similarity=-0.023 Sum_probs=44.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcC
Q 038373 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANG 208 (475)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g 208 (475)
..+...+...|+.++|.+.++.....+ ..+...+..+-..|.+.|++++|..+|++..+ .+...|..+-..|...|
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 333344445555555555555554433 23444555555555555555555555554421 23344444445555555
Q ss_pred ChHHHHHHHHHHHH
Q 038373 209 QGADGLMLFEQMRK 222 (475)
Q Consensus 209 ~~~~A~~l~~~M~~ 222 (475)
++++|+..|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554444
No 103
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.013 Score=58.93 Aligned_cols=207 Identities=14% Similarity=0.023 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTS--AF-VKDVELNNKLI 170 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~-~p~~~~~~~Li 170 (475)
.++|-++---|--.|+..+|.+.|.+.....|.- -.|-..-..++-.+.-++|...+...-+. |. .|.. |..
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Ylg-- 387 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--YLG-- 387 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--HHH--
Confidence 3455555555555566666666665533211111 13444555566666666666666555442 32 2322 222
Q ss_pred HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC----CCHHHHHHHHHHHHc
Q 038373 171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT--GPH----PDKETFLVVFAACAS 241 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~~----pd~~t~~~li~~~~~ 241 (475)
--|.+.++++.|.+.|.+... | |....|-+--.....+.+.+|...|+.-+.. .+. -..-|++.|-.+|.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 236667788888888876542 3 6667777666666778899999999887621 111 144578999999999
Q ss_pred cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 038373 242 AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFA 307 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~ 307 (475)
.+.+++|...|+.... -..-|..+|+++--.|...|+++.|.+.|.+- .+.||..+-..|+.-+
T Consensus 468 l~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999998873 23337788888888899999999999999988 8889988888887643
No 104
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.42 E-value=0.0016 Score=64.92 Aligned_cols=117 Identities=10% Similarity=0.039 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHH
Q 038373 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKT--GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIA 270 (475)
Q Consensus 193 ~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~ 270 (475)
+.+....+++.+....+.+++..++.+.... ...--..|..++|+.|-+.|..+++..+++.=. .+|+-||..+||.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~-~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL-QYGIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-hcccCCChhhHHH
Confidence 5567778888888888899999999888765 332334566799999999999999999998877 6899999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 038373 271 IIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIH 310 (475)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~ 310 (475)
||+.+.+.|++..|.+++..| +.-.+..|+.--+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988 3334556666666666555
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.41 E-value=0.02 Score=61.35 Aligned_cols=139 Identities=11% Similarity=0.045 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHH
Q 038373 127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMIS 202 (475)
Q Consensus 127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~ 202 (475)
+...+-.|-....+.|..++|..+++...+. .|| ......+...+.+.+++++|...+++... | +....+.+-.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 3555666666666667777777777776654 343 44455556667777777777777766653 3 3445566666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHH
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAI 271 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~l 271 (475)
++.+.|++++|.++|++.... .|| ..++..+-.++-..|+.++|...|+...+ ...|...-|+-+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~ 228 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRR 228 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHH
Confidence 677777777777777777662 233 55666666667777777777777776663 344444444443
No 106
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.41 E-value=0.048 Score=54.21 Aligned_cols=189 Identities=10% Similarity=0.054 Sum_probs=128.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 91 GNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 91 ~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
+.||...+...+.+.-....-..+-.++.+....+-...-|..-+..| ..|.++.|+..+..+.+.- +-|++......
T Consensus 270 d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 270 DSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred CCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 346666777777665444433333333322222122233466555543 5688899999999987653 44566666667
Q ss_pred HHHHHcCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE 247 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~ 247 (475)
+.+.+.++..+|.+.|+.+.. |+ ...+-.+-.+|.+.|++.+|+.++++-.... +-|...|..|-.+|...|+..+
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHH
Confidence 889999999999999998873 54 4566677788999999999999998877653 4478899999999999998887
Q ss_pred HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 038373 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWE 301 (475)
Q Consensus 248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~ 301 (475)
+..-..+ +|.-.|++++|..++... ..+++..+|.
T Consensus 427 a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a 463 (484)
T COG4783 427 ALLARAE-------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWA 463 (484)
T ss_pred HHHHHHH-------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence 7654443 355678888888877665 2334555553
No 107
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.41 E-value=0.12 Score=53.11 Aligned_cols=180 Identities=13% Similarity=0.128 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038373 141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFE 218 (475)
Q Consensus 141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~ 218 (475)
.|++..|..++.+..+.. .-+...+-+-+..-.....++.|+.+|.+... +....|.--++----.|+.++|+++++
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 344555555544444432 12334444444444445555555555544332 233333333333333444555555554
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC--CCC
Q 038373 219 QMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM--PFE 294 (475)
Q Consensus 219 ~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~ 294 (475)
+-.+ .-||-. .|..+-..+-+.++++.|.+.|..=. ...|+ ...|-.|...=-+.|.+-+|..+|++- .-.
T Consensus 676 e~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 676 EALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 4433 233332 33333334444445555544443322 12343 455677777777888888999998887 334
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHH-HHhcc
Q 038373 295 PTVEVWEALRNFAQIHGDVELEDRAEE-LLGDL 326 (475)
Q Consensus 295 p~~~t~~~li~~~~~~g~~~~a~~~~~-~l~~~ 326 (475)
.|...|-..|..-.+.|+.+.|+.... .|++.
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 578889999999999999987766543 33443
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.40 E-value=0.031 Score=55.48 Aligned_cols=116 Identities=17% Similarity=0.132 Sum_probs=95.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCC
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHPDKETFL-VVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGH 280 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~-~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~ 280 (475)
.+...|++++|+..++++... .||..-|. .....+.+.++.++|.+.++.+. ...|+ ....-.+-++|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCC
Confidence 456789999999999998764 56666554 55677889999999999999998 45676 4555677789999999
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 281 LIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 281 ~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
..+|..++++. ...-|...|..|-.+|...|+..++..+....
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999988 44568899999999999999998877776554
No 109
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.34 E-value=0.008 Score=51.17 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc--CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLRK--RNL----SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK--ETFLVVFA 237 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~~--~~~----~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~li~ 237 (475)
|..++..+ ..++...+...++.+.+ |+. ..+=.+-..+...|++++|...|++.......|+. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 25556666555555543 221 11222334566666666666666666665422221 23334455
Q ss_pred HHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 238 ACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 238 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
.+...|++++|...++..... .+. ...+..+=+.|.+.|+.++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~-~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE-AFK--ALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc-chH--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556666666666666554311 222 23344555666666666666666653
No 110
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.073 Score=57.05 Aligned_cols=233 Identities=13% Similarity=0.059 Sum_probs=153.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS----AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD--VEL 165 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~ 165 (475)
.-|++..|.|-+-|.-.|++..++++...+.... .-...|--+-+++-..|++++|...|.+..+.. +| +..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 4566677888888899999999999887655422 122347777888999999999999998877653 44 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANG----QGADGLMLFEQMRKTGPHPDKETFLVVFAA 238 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g----~~~~A~~l~~~M~~~g~~pd~~t~~~li~~ 238 (475)
+-.|..+|.+.|+++.|...|+..-+ | +..|--+|-.-|+..+ ..++|..++.+-.+.- .-|...|..+-..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHH
Confidence 55678899999999999999998863 4 4456666666666665 3466666666555432 2255566666555
Q ss_pred HHccCCHHHHHHHHH----HHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CCCH-----H--HHH
Q 038373 239 CASAEAVKEGFLYFE----IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-----EPTV-----E--VWE 301 (475)
Q Consensus 239 ~~~~g~~~~a~~~~~----~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~~-----~--t~~ 301 (475)
+-.. +...+..++. .+... +-.+-...-|.+-..+...|.+++|.+.|+.. +. .+|. + -||
T Consensus 424 ~e~~-d~~~sL~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 424 LEQT-DPWASLDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHhc-ChHHHHHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 5443 3333354443 33323 44466677888888899999999999988776 21 2333 1 233
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 302 ALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
|-...-..++.+.|++.+..+....|.-
T Consensus 502 -larl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 502 -LARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred -HHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 2233344567777777777666555543
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.12 Score=47.52 Aligned_cols=174 Identities=15% Similarity=0.046 Sum_probs=116.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP 227 (475)
Q Consensus 148 ~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 227 (475)
.++.+++...-...+...-..-...|++.|++++|++..+....-.+..-| +..+.+..+++-|.+.+++|.+- -
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---d 167 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---D 167 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 345555555444455444444455789999999999998884433444443 34466777889999999999763 2
Q ss_pred CHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 038373 228 DKETFLVVFAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWE 301 (475)
Q Consensus 228 d~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~ 301 (475)
+..|.+-|..++.+ .+.+.+|.-+|++|.+ ...|+.-+-|-....+...|++++|+.++++. .-..|..+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 55677766666543 4668899999999984 46677778888888888999999999999887 3334566666
Q ss_pred HHHHHHHHcCCch-HHHHHHHHHhccCC
Q 038373 302 ALRNFAQIHGDVE-LEDRAEELLGDLDP 328 (475)
Q Consensus 302 ~li~~~~~~g~~~-~a~~~~~~l~~~~~ 328 (475)
.+|-.....|.-. .-.+-...+....|
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p 273 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHP 273 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence 6665555566542 22334444444433
No 112
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.31 E-value=0.012 Score=50.07 Aligned_cols=122 Identities=14% Similarity=0.039 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HH---HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DV---FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDV--ELNNKLI 170 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t---~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~Li 170 (475)
.|..++..+ ..++...+...++.+....|+. .. .-.+-..+...|++++|...|+......-.++. ...-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344445444 3555555555555544433333 11 112223445556666666666666555422211 1222344
Q ss_pred HHHHHcCCHHHHHHHHHhcccC--CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRKR--NLSSWHLMISGYAANGQGADGLMLFEQ 219 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~~--~~~tyn~li~~~~~~g~~~~A~~l~~~ 219 (475)
..+...|++++|...++....+ ....+...-..|.+.|+.++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555556666666666554332 122334444455556666666555543
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.31 E-value=0.0099 Score=49.64 Aligned_cols=93 Identities=10% Similarity=0.030 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~ 239 (475)
......+...|.+.|+.++|.+.|+...+ | +...|..+-..|.+.|++++|...|++....+ ..+..++..+-..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 34455556666667777777777766542 2 45566666666767777777777776655543 22445555555666
Q ss_pred HccCCHHHHHHHHHHHh
Q 038373 240 ASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 240 ~~~g~~~~a~~~~~~m~ 256 (475)
...|+.++|...|+...
T Consensus 96 ~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 96 LALGEPESALKALDLAI 112 (135)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66677777777666665
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.30 E-value=0.0047 Score=63.81 Aligned_cols=186 Identities=15% Similarity=0.103 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
+..|.-+|-+|+..|+..+|..+..+..+..||..-|..+.+......-+++|.++.+..-.. .--.+-.-..
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 345788899999999999999998887776699999999999888777788888888766432 1111111122
Q ss_pred HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHH
Q 038373 175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~ 250 (475)
+.++++++.+.|+.--+ | -.-+|=.+-.+..+.++++.|.+.|..-.. ..||. ..||++-.+|.+.++-.+|..
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 36888888888875332 2 345777777777888888888888877665 56765 478999999999999999998
Q ss_pred HHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 251 ~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.+.+.. +++.. +...|-..+-...+.|.+++|.+.+.++
T Consensus 575 ~l~EAl-Kcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 575 KLKEAL-KCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHh-hcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 888887 55633 3445666666778889999988888877
No 115
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.26 E-value=0.0028 Score=60.46 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKV 274 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~ 274 (475)
+|-.+|...-+.+..++|..+|.+..+.+ +..+.....++|.-+ ..++.+.|..+|+...+. +.-+...|...|+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 45555555555555566666665555322 233333333333322 234455566666665533 22344445666666
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhccCCC
Q 038373 275 LGSAGHLIEAEEFVERM-PFEPTV----EVWEALRNFAQIHGDVELEDRAEELLGDLDPS 329 (475)
Q Consensus 275 ~~~~g~~~~A~~~~~~m-~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~ 329 (475)
+.+.|+.+.|..+|++. ..-|.. ..|...|..=.+.|+++.+.++.+.+.++.++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 66666666666666665 212222 36666666666666666665665555555444
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.25 E-value=0.018 Score=61.68 Aligned_cols=141 Identities=9% Similarity=0.001 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
++..+-.|-....+.|..++|+.+++......||... ...+...+.+.+++++|....++..+.. .-+....+.+-.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence 3666777777888999999999999998877787765 6777888999999999999999998875 4456677778888
Q ss_pred HHHcCCHHHHHHHHHhcccC--C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRKR--N-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVF 236 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~~--~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li 236 (475)
+.+.|+.++|..+|++...+ | ..+|..+-.++-..|+.++|...|++-.+. ..|....|+..+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 99999999999999998754 3 568889999999999999999999998763 233445555444
No 117
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.21 E-value=0.0043 Score=47.00 Aligned_cols=87 Identities=17% Similarity=0.059 Sum_probs=38.7
Q ss_pred HHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 038373 100 VNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN 178 (475)
Q Consensus 100 ~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~ 178 (475)
.+...+.+.|++++|...|++.....|+. ..+..+...+...+++++|.+.+....+.. ..+..++..+...+...|+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 34444555555555555555544333322 333444444444455555555555444432 2222334444444444444
Q ss_pred HHHHHHHHH
Q 038373 179 TRLARKVFD 187 (475)
Q Consensus 179 ~~~A~~~f~ 187 (475)
.++|...|+
T Consensus 84 ~~~a~~~~~ 92 (100)
T cd00189 84 YEEALEAYE 92 (100)
T ss_pred HHHHHHHHH
Confidence 444444443
No 118
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.19 E-value=0.0095 Score=56.86 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHH---H-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMIS---G-YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAA 238 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~---~-~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~ 238 (475)
+.+|..+++..-|.+.++.|+.+|.+..+.+-.+|...+. - |...++.+.|..+|+...+. +.-+..-|..-|+-
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3588999999999999999999999988654444433332 1 33356677799999998875 45567778888899
Q ss_pred HHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 239 CASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 239 ~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+.+.++.+.|..+|+.......-.. -...|...|+-=.+.|+++.+.++.+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999985422222 2358999999999999999999999888
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.17 E-value=0.034 Score=57.59 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=130.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC 177 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g 177 (475)
|..+.+-|+..|+++.|.++|-+... |+-.|..|.+.|+++.|.++-.+. .|-+.....|-+-..-+-+.|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~-------~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehg 838 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADL-------FKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHG 838 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcch-------hHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhc
Confidence 56677789999999999999987643 667789999999999999886554 454556677777777788899
Q ss_pred CHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373 178 NTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK--ETFLVVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 178 ~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~li~~~~~~g~~~~a~~~~~~m 255 (475)
++.+|+++|-.+.+|+. -|..|-+.|..++.+++..+- .||. .|-.-+-.-+-..|++..|++-|-+.
T Consensus 839 kf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 839 KFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred chhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 99999999998888884 467899999999999988763 3332 35555666777789999998877654
Q ss_pred hhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 256 KNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 256 ~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
- -|.+-+++|-..+.+++|.++-+.-
T Consensus 909 ~----------d~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 909 G----------DFKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred h----------hHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 4 2677889999999999999887665
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.16 E-value=0.054 Score=59.06 Aligned_cols=209 Identities=10% Similarity=0.055 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH---HHHHHHHHhccCCHHHHHHH------------------H
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDV---FSSLLDSCGNLKSIEMGKRV------------------H 151 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t---~~~ll~~~~~~~~~~~a~~~------------------~ 151 (475)
.+...|-.||..|-..+++++|.++.++.....|+... |..+ .+.+.++.+.+..+ +
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 56678999999999999999999998865554455543 2222 33444444444333 3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038373 152 ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD 228 (475)
Q Consensus 152 ~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd 228 (475)
..|.+.+ -+-..+-.|..+|-+.|+.++|..+++++.+ .|...-|-+-..|+.. +.++|.+++.+....-+ |
T Consensus 107 ~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~ 181 (906)
T PRK14720 107 DKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--K 181 (906)
T ss_pred HHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--h
Confidence 3333322 2224666777888888999999999988874 3677888888888888 88888888887655311 1
Q ss_pred HHHHHHHHHH---H--HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038373 229 KETFLVVFAA---C--ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWE 301 (475)
Q Consensus 229 ~~t~~~li~~---~--~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~ 301 (475)
..-|+.+..- + +...+++.-.++.+.+....|+.--+.++-.|.+-|-+..+++++.++|+.. ...| |.-...
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 1122222211 1 1223344444444444443344444556667777788888888888888887 3333 455556
Q ss_pred HHHHHHH
Q 038373 302 ALRNFAQ 308 (475)
Q Consensus 302 ~li~~~~ 308 (475)
-|+..|.
T Consensus 262 ~l~~~y~ 268 (906)
T PRK14720 262 ELIRFYK 268 (906)
T ss_pred HHHHHHH
Confidence 6666665
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.027 Score=51.68 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=68.3
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC-HHHHHHHHHHHHh----cCChH
Q 038373 137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRN-LSSWHLMISGYAA----NGQGA 211 (475)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~-~~tyn~li~~~~~----~g~~~ 211 (475)
.|++.+++++|.+..... -+....-.=+..+.|..+++-|.+.++.|.+-| -.|-+-|-.++.+ .+.+.
T Consensus 117 i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence 466677777777665541 112222222344555666777777777776542 2344433333332 34567
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 038373 212 DGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKND 258 (475)
Q Consensus 212 ~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 258 (475)
+|+-+|+||-++ ..|+..+.|....++-..|++++|..++++...+
T Consensus 191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777777777543 5677777777777777777777777777776644
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.15 E-value=0.1 Score=58.59 Aligned_cols=229 Identities=9% Similarity=-0.041 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhccc----CC-CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDAS----AS-AG--YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFV--K- 161 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~----~~-p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~--p- 161 (475)
..++.+-..+...|++++|...+.+... .+ +. ..++..+-..+...|+++.|.+.+++.... |.. +
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 3456666667889999999999876442 12 21 223455555677889999999998876542 321 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhccc------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHH
Q 038373 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK------R--NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-PDKETF 232 (475)
Q Consensus 162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~------~--~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~ 232 (475)
....+..+-..+...|++++|...+++... + ....+..+...+...|+.++|.+.+.+.....-. .....+
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 234455566677778999999998887532 1 1335555667788899999999999887542111 111111
Q ss_pred -----HHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC---HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-
Q 038373 233 -----LVVFAACASAEAVKEGFLYFEIMKNDYGIVPG---IEHYIAIIKVLGSAGHLIEAEEFVERM-------PFEPT- 296 (475)
Q Consensus 233 -----~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~- 296 (475)
...+..+...|+.+.|...+...... ..... ...+..+...+...|+.++|..++++. +..++
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 11224445588999999988776521 11111 111345667788999999999988876 32222
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373 297 VEVWEALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 297 ~~t~~~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
..+...+-.++...|+.+.|...+....+
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23444555678889999777666555444
No 123
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.12 E-value=0.0084 Score=45.31 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh
Q 038373 198 HLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS 277 (475)
Q Consensus 198 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~ 277 (475)
..+...+...|++++|+.+|++..+.. ..+...+..+...+...+++++|.+.++..... . ..+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-D-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CcchhHHHHHHHHHHH
Confidence 334444445555555555555544321 112234444444444555555555555544421 1 1122344444455555
Q ss_pred cCCHHHHHHHHHh
Q 038373 278 AGHLIEAEEFVER 290 (475)
Q Consensus 278 ~g~~~~A~~~~~~ 290 (475)
.|+.++|.+.|.+
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555555544
No 124
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.34 Score=48.20 Aligned_cols=234 Identities=12% Similarity=0.083 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.||...|++.|+.=.+...++.|..+++.-+-..|+..+|---.+.=-+.|++..+..+|....+. --|...--.|..
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHH
Confidence 566677777776666666677777776665444466666655555555666666666666655442 111222222222
Q ss_pred HHH----HcCCHHHHHHHHHh----ccc------------------------------------------C-CHHHHHHH
Q 038373 172 MYG----KCCNTRLARKVFDQ----LRK------------------------------------------R-NLSSWHLM 200 (475)
Q Consensus 172 ~~~----k~g~~~~A~~~f~~----m~~------------------------------------------~-~~~tyn~l 200 (475)
+++ ++..++.|.-+|.- +++ | |--+|--.
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdy 328 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDY 328 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHH
Confidence 332 33444444444432 110 0 12245555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HccCCHHHHHHHHHHHhhhCCCcC-CHHHHH
Q 038373 201 ISGYAANGQGADGLMLFEQMRKTGPHPDK-------ETFLVVFAAC---ASAEAVKEGFLYFEIMKNDYGIVP-GIEHYI 269 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~-------~t~~~li~~~---~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~ 269 (475)
+.---..|+.+...++|+..... +.|-. ..|.-+=-+| ....+++.+.++++... + +-| ...||.
T Consensus 329 lrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l-~--lIPHkkFtFa 404 (677)
T KOG1915|consen 329 LRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL-D--LIPHKKFTFA 404 (677)
T ss_pred HHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-h--hcCcccchHH
Confidence 55555567777777777766543 44411 1221111111 24566777777777666 2 333 455665
Q ss_pred HHHHHHH----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 270 AIIKVLG----SAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 270 ~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
.+--+|+ ++-++..|.+++... |.-|-..+|..-|..=.+.+++|.....++.+.+..|.+.
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 5544443 567788888888766 7778888888888777778888888888888888777764
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.12 Score=54.44 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=28.5
Q ss_pred ccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 038373 241 SAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 241 ~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~ 313 (475)
..|+++.|..+|...+ + |-+++...|-.|++++|-++-++-| |....-.|-.-|-..|++
T Consensus 924 S~GemdaAl~~Y~~A~-D---------~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAK-D---------YFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDV 983 (1416)
T ss_pred cccchHHHHHHHHHhh-h---------hhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHH
Confidence 3455555555444443 1 3344455555555555555555543 333333344444444544
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.092 Score=53.23 Aligned_cols=205 Identities=15% Similarity=0.084 Sum_probs=127.0
Q ss_pred HHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373 105 LCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLAR 183 (475)
Q Consensus 105 ~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~ 183 (475)
+.+.|.+.+|.-.|+..+...|.. ..|--|-...+..++-..|...+.+..+.. .-|..+.-+|--.|...|.=.+|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 567888999998898876655643 457667667777777777888887777764 445666677777777777777777
Q ss_pred HHHHhcc--c--------------------------------------------CCHHHHHHHHHHHHhcCChHHHHHHH
Q 038373 184 KVFDQLR--K--------------------------------------------RNLSSWHLMISGYAANGQGADGLMLF 217 (475)
Q Consensus 184 ~~f~~m~--~--------------------------------------------~~~~tyn~li~~~~~~g~~~~A~~l~ 217 (475)
+.|+.-. . .|...++.|---|--.|++++|...|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7776431 0 12224444545555666777777777
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC----
Q 038373 218 EQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM---- 291 (475)
Q Consensus 218 ~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m---- 291 (475)
+..+. ++| |..+||-|-..++...+-++|...|.+.. .+.|+ +.....|--.|...|.++||.+.|-..
T Consensus 454 ~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 454 EAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 76665 445 44567777777777777777777777665 35554 222222333466677777766655332
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCchH
Q 038373 292 --------PFEPTVEVWEALRNFAQIHGDVEL 315 (475)
Q Consensus 292 --------~~~p~~~t~~~li~~~~~~g~~~~ 315 (475)
...++...|.+|=.++.-.++.|.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 011234566666555555555543
No 127
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.026 Score=53.66 Aligned_cols=194 Identities=14% Similarity=0.045 Sum_probs=110.7
Q ss_pred HHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHH-----hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 038373 104 SLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSC-----GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN 178 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~-----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~ 178 (475)
-|.+.+++.+|..+.++.....|-.+..-.+..+- +....+.-|.+.|...-+++.+-|..- |
T Consensus 294 YyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp-----------G- 361 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP-----------G- 361 (557)
T ss_pred eecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc-----------c-
Confidence 45666666666666666544334333333332221 111234445555555444444333221 1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 038373 179 TRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKND 258 (475)
Q Consensus 179 ~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 258 (475)
--+|.+.+.-..++++.+-.++..+.-=..-|.+.|| +..+.+..|.+.+|+++|-.+..
T Consensus 362 ------------------RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~- 421 (557)
T KOG3785|consen 362 ------------------RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG- 421 (557)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC-
Confidence 2233333444444555555555444432223333443 55677888888888888877652
Q ss_pred CCCcCCHHHHHH-HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 259 YGIVPGIEHYIA-IIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALR-NFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 259 ~g~~p~~~~y~~-li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li-~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
..+ -|..+|.+ |...|.++++.+-|.+++-++.-..+..+.--+| +-|-+.+.+--|.+|+..++.++|..
T Consensus 422 ~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 422 PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 122 35667754 4578889999999999988885444555544455 46777888877888888888777654
No 128
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.17 Score=50.25 Aligned_cols=208 Identities=14% Similarity=0.119 Sum_probs=147.6
Q ss_pred HcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 038373 107 KEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDV-ELNNKLIEMYGKCCNTRLARK 184 (475)
Q Consensus 107 ~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~Li~~~~k~g~~~~A~~ 184 (475)
..+++..|..+|+...... -+...|-.-+.+=.+...+..|..+++..+.. -|-+ ..+--.+.+=-..|++..|++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3556677888888766522 23233555555667788899999999988764 3332 234445555566799999999
Q ss_pred HHHh-cc-cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373 185 VFDQ-LR-KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV 262 (475)
Q Consensus 185 ~f~~-m~-~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 262 (475)
+|+. |. +||.-.|++.|+-=.+-..++.|..+++...- +.|++.+|.-...-=-+.|.+..+..+|....+..|-.
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 9985 44 79999999999999999999999999999876 56999999888888889999999999998877543321
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 038373 263 P-GIEHYIAIIKVLGSAGHLIEAEEFVER----MPFEPTVEVWEALRNFAQIHGDVELEDR 318 (475)
Q Consensus 263 p-~~~~y~~li~~~~~~g~~~~A~~~~~~----m~~~p~~~t~~~li~~~~~~g~~~~a~~ 318 (475)
- +...+++...-=.++..++.|.-+|+- ++.......|..+...=.+.|+.+..+.
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 1 223344444444566778888877653 3433346677777776667777644333
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.87 E-value=0.07 Score=53.66 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHh-ccc-CCHHHH-HHHHHHHH
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK-DVELNNKLIEMYGKCCNTRLARKVFDQ-LRK-RNLSSW-HLMISGYA 205 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~Li~~~~k~g~~~~A~~~f~~-m~~-~~~~ty-n~li~~~~ 205 (475)
+|...++..-+..-++.|+.+|.+..+.+..+ ++++++++|.-||. ++.+-|.++|+- |++ +|.-.| +..+.-+.
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 35555555555555666666666666555555 55666666665553 455556666652 222 233222 23334444
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 206 ANGQGADGLMLFEQMRKTGPHPDK--ETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
..++-..|..||+.....++.||. ..|..+|.-=+.-|++..+.++-+++.
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455555555566555555444443 355555555555555555555555444
No 130
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.86 E-value=0.39 Score=49.56 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHHHc----------CCCC
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLS-------SWHLMISGYAANGQGADGLMLFEQMRKT----------GPHP 227 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~-------tyn~li~~~~~~g~~~~A~~l~~~M~~~----------g~~p 227 (475)
.|..+-+.|-..|+++.|+.+|++-.+-+-. +|-.--..=.++.+++.|+++.+....- |-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 4556777788889999999999887653222 4444444445667778888877664321 1111
Q ss_pred -------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc-CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C-C-CCC
Q 038373 228 -------DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV-PGIEHYIAIIKVLGSAGHLIEAEEFVERM-P-F-EPT 296 (475)
Q Consensus 228 -------d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~ 296 (475)
....|...++---..|-++....+++.+. +..+. |-.+.--++ -+-...-++++.+++++= . + -|+
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii-dLriaTPqii~NyAm--fLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII-DLRIATPQIIINYAM--FLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHhcCCHHHHHHHHH--HHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 11233444444445567777777777777 33332 222111111 133444566677766653 1 1 133
Q ss_pred H-HHHHHHHH
Q 038373 297 V-EVWEALRN 305 (475)
Q Consensus 297 ~-~t~~~li~ 305 (475)
+ ..||+-+.
T Consensus 546 v~diW~tYLt 555 (835)
T KOG2047|consen 546 VYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHH
Confidence 3 35666554
No 131
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.85 E-value=0.34 Score=54.43 Aligned_cols=222 Identities=9% Similarity=-0.023 Sum_probs=139.7
Q ss_pred HHHHcCChHHHHHHHHhcccCC--CCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHH
Q 038373 104 SLCKEGKVREAIEYMGQDASAS--AGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTS----AF-VKDVELNNKLIEM 172 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~--p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~Li~~ 172 (475)
.+...|++++|...+++..... .+. ...+.+-..+...|++++|...+.+.... |- .....+++.+-..
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 4568999999999988754311 222 23455555667889999999999887643 21 1123455666677
Q ss_pred HHHcCCHHHHHHHHHhccc-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRK-------R----NLSSWHLMISGYAANGQGADGLMLFEQMRKT--GPHPD--KETFLVVFA 237 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~-------~----~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd--~~t~~~li~ 237 (475)
+...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ..++..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 8889999999998876542 1 1234555556677789999999999887552 12222 334555666
Q ss_pred HHHccCCHHHHHHHHHHHhhh---CCCcCCH-HH-HHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHH
Q 038373 238 ACASAEAVKEGFLYFEIMKND---YGIVPGI-EH-YIAIIKVLGSAGHLIEAEEFVERMPF-E-PTV----EVWEALRNF 306 (475)
Q Consensus 238 ~~~~~g~~~~a~~~~~~m~~~---~g~~p~~-~~-y~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~t~~~li~~ 306 (475)
.....|+.++|.+.+.....- .+..... .. -...+..+...|+.+.|.+++..... . ... ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 777899999999988877521 1111111 00 01123455668999999999877621 1 111 113344556
Q ss_pred HHHcCCchHHHHHHHHHhc
Q 038373 307 AQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 307 ~~~~g~~~~a~~~~~~l~~ 325 (475)
+...|+.++|...++...+
T Consensus 701 ~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 701 QILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7788998777666554433
No 132
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.85 E-value=0.0044 Score=51.16 Aligned_cols=79 Identities=9% Similarity=0.111 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMR---------------KTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDY 259 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~---------------~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 259 (475)
.++.++|.++++.|+.+....+.+..- ...+.||..+..+++.+|+..|++..|.++.+...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555444443321 12334445555555555555555555555555444444
Q ss_pred CCcCCHHHHHHHHH
Q 038373 260 GIVPGIEHYIAIIK 273 (475)
Q Consensus 260 g~~p~~~~y~~li~ 273 (475)
++..+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444444444443
No 133
>PLN02789 farnesyltranstransferase
Probab=96.82 E-value=0.43 Score=46.35 Aligned_cols=169 Identities=8% Similarity=0.012 Sum_probs=117.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCCh--HH
Q 038373 139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC-NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQG--AD 212 (475)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g-~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~--~~ 212 (475)
...+..++|..+...+++.. .-+..+|+-.-.++.+.| ++++++..++++.+ ++..+|+.--..+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 34567788888888888753 233445555555666667 68999999998764 3566788766666666763 67
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc---CCH----HHHH
Q 038373 213 GLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA---GHL----IEAE 285 (475)
Q Consensus 213 A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~---g~~----~~A~ 285 (475)
++.++++|.+... -|..+|+..-.++.+.|+++++.+.++.+.+. +.. |...|+..-..+.+. |.. +++.
T Consensus 127 el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 127 ELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 8999999987543 27789999999999999999999999999843 443 455666555545444 323 4566
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 038373 286 EFVERM-PFEP-TVEVWEALRNFAQIHG 311 (475)
Q Consensus 286 ~~~~~m-~~~p-~~~t~~~li~~~~~~g 311 (475)
++..+. ...| |...|+-+-..+...+
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~ 231 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDK 231 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCC
Confidence 666444 3333 6678988888777643
No 134
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.81 E-value=0.034 Score=44.87 Aligned_cols=90 Identities=14% Similarity=0.074 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Q 038373 167 NKLIEMYGKCCNTRLARKVFDQLRK--RN----LSSWHLMISGYAANGQGADGLMLFEQMRKTGPH--PDKETFLVVFAA 238 (475)
Q Consensus 167 ~~Li~~~~k~g~~~~A~~~f~~m~~--~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~t~~~li~~ 238 (475)
-.+...+.+.|++++|.+.|+.+.+ |+ ...+..+...+.+.|++++|...|++....... .....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444445555555555554432 11 123333444455555555555555554432111 012233344444
Q ss_pred HHccCCHHHHHHHHHHHh
Q 038373 239 CASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 239 ~~~~g~~~~a~~~~~~m~ 256 (475)
+.+.|+.++|...++++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHhCChHHHHHHHHHHH
Confidence 444455555555555444
No 135
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=96.81 E-value=0.7 Score=47.74 Aligned_cols=222 Identities=16% Similarity=0.061 Sum_probs=134.0
Q ss_pred HHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373 105 LCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLAR 183 (475)
Q Consensus 105 ~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~ 183 (475)
++.-|+-++|.+..+.+.+.. -+.+.|..+--.+-...+.++|.+.|....+.+ +-|...+--|--.-++.|+++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 344566666666666555433 233445544444445566777777777666655 445555554444444445555444
Q ss_pred HHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHccCCHHHHHHHHH
Q 038373 184 KVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVF------AACASAEAVKEGFLYFE 253 (475)
Q Consensus 184 ~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~li------~~~~~~g~~~~a~~~~~ 253 (475)
..-...-+ ..-..|..+.-++--.|+...|..+.++....- -.|+...|--.. .-..+.|..++|.+.+.
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 43333322 244578888889999999999999999988754 246665554332 23456788888888776
Q ss_pred HHhhhCCCcCCHHHH-HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH--HcCCchHHHHHHHHHhccCCC
Q 038373 254 IMKNDYGIVPGIEHY-IAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQ--IHGDVELEDRAEELLGDLDPS 329 (475)
Q Consensus 254 ~m~~~~g~~p~~~~y-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~l~~~~~~ 329 (475)
.-.. .+ .|-..| -+-.+.+.+.|++++|..++..+ ...||.+-|.-.+..+. -.+..+.....+..+.+.-|.
T Consensus 210 ~~e~--~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 210 DNEK--QI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhhh--HH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 5542 22 233333 35567789999999999999988 44688888877665333 233333333555555554444
Q ss_pred C
Q 038373 330 K 330 (475)
Q Consensus 330 ~ 330 (475)
.
T Consensus 287 ~ 287 (700)
T KOG1156|consen 287 H 287 (700)
T ss_pred c
Confidence 3
No 136
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.81 E-value=0.041 Score=48.26 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
.|..+-..+.+.|++++|...|++.....|+ ...+..+-..+.+.|++++|...+....+.. .-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444444555556666666655554432222 1234444455555555555555555554432 1233344444444
Q ss_pred HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 173 YGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
|...|+...+..-++... ..+++|.+++++... ..|+. |..++.-+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A~-----------------~~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAE-----------------ALFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHHH-----------------HHHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcCc
Confidence 444444333332222110 114667777766654 33443 6666666655554
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.80 E-value=0.034 Score=44.87 Aligned_cols=93 Identities=14% Similarity=0.091 Sum_probs=38.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHH
Q 038373 199 LMISGYAANGQGADGLMLFEQMRKTGPH--PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVL 275 (475)
Q Consensus 199 ~li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~ 275 (475)
.+...+.+.|++++|.+.|.++....-. .....+..+...+.+.|++++|...++.+.....-.+ ....+..+...|
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444455555555555554432100 0112333344444455555555555554442211100 122233444444
Q ss_pred HhcCCHHHHHHHHHhC
Q 038373 276 GSAGHLIEAEEFVERM 291 (475)
Q Consensus 276 ~~~g~~~~A~~~~~~m 291 (475)
.+.|+.++|.+.+++.
T Consensus 87 ~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 87 QELGDKEKAKATLQQV 102 (119)
T ss_pred HHhCChHHHHHHHHHH
Confidence 4455555555555444
No 138
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.053 Score=54.86 Aligned_cols=189 Identities=12% Similarity=0.057 Sum_probs=123.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHH
Q 038373 139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLM 215 (475)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~ 215 (475)
.+.|++.+|.-.|+..++.. +-+...|--|--.-...++=..|...+.+..+ | |...--+|--.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34566666666666665553 33455555555555555555556655555443 2 55566666677777777777777
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038373 216 LFEQMRKTGPH--------PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEF 287 (475)
Q Consensus 216 l~~~M~~~g~~--------pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~ 287 (475)
.|+.-.....+ ++..+=++ +.+.....+.+..++|-++....+..+|..+++.|=-.|--.|++++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 77776543211 00000000 122223345566667777766667556666677777778899999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 288 VERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 288 ~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
|+.. .++| |..+||-|=..++...+-++|..|+..-.++.|.-
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 9987 4555 67899999999998888999999999998887664
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.49 Score=43.37 Aligned_cols=177 Identities=14% Similarity=0.144 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHhcCChH
Q 038373 142 KSIEMGKRVHELLRT---SA-FVKDVEL-NNKLIEMYGKCCNTRLARKVFDQLRK--R---NLSSWHLMISGYAANGQGA 211 (475)
Q Consensus 142 ~~~~~a~~~~~~m~~---~g-~~p~~~~-~~~Li~~~~k~g~~~~A~~~f~~m~~--~---~~~tyn~li~~~~~~g~~~ 211 (475)
.+.++..+++.+|+. .| ..++..+ |--++-+...+|+.+.|..++++... | -+.-..+|. +-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchh
Confidence 455666666666643 24 5555543 44455566677888888888887653 2 222222222 34478899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 212 DGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 212 ~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+|+++++...++. +-|.++|--=+...-..|+--+|.+-+....+ .|.-|...|--|-+.|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999988876 44777887666666666777788877777773 56778888999999999999999999999998
Q ss_pred -CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 292 -PFEPTVE-VWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 292 -~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
-+.|-.. -+..+-..+-..|..+.-+-+.+.+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3345443 3444444444444444333343333
No 140
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.37 Score=46.20 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHH-HHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCccccc
Q 038373 270 AIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALR-NFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSA 346 (475)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li-~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 346 (475)
.+..+++..|...+|+++|-++ +.+ .|..+|.+++ ..|.++|.. +-||+++..++.....+..+.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP---~lAW~~~lk~~t~~e~fsLLq--------- 465 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP---QLAWDMMLKTNTPSERFSLLQ--------- 465 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc---hHHHHHHHhcCCchhHHHHHH---------
Confidence 4667889999999999999888 322 5788888877 477888888 668888877765544332110
Q ss_pred ceeEEecCeEEEEEccCcc-chHHHHHHHHHHHHHHcCcccCCccccccccHHHH
Q 038373 347 TNMLEEKNRVSDYRSTDLY-RGEYEKMKGLNGQMREAGYVPDTRYVLHDIDEEAK 400 (475)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~-~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~ 400 (475)
.+...|+ .+++--|-+-|+++.. .-|++..|..--.+|..
T Consensus 466 ------------lIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 466 ------------LIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGACAG 506 (557)
T ss_pred ------------HHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchHHH
Confidence 1111122 2334445555655543 35777777766666643
No 141
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.63 E-value=0.033 Score=46.02 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHh--------------hhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 038373 228 DKETFLVVFAACASAEAVKEGFLYFEIMK--------------NDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-- 291 (475)
Q Consensus 228 d~~t~~~li~~~~~~g~~~~a~~~~~~m~--------------~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-- 291 (475)
|..++.++|-++++.|+++....+.+..- ....+.|+..+-.+++.+|+..|++..|.++++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 56789999999999999999988886543 11235678889999999999999999999998887
Q ss_pred --CCCCCHHHHHHHHHHHHHcCC
Q 038373 292 --PFEPTVEVWEALRNFAQIHGD 312 (475)
Q Consensus 292 --~~~p~~~t~~~li~~~~~~g~ 312 (475)
++.-+..+|..|+.-+...-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 677779999999985544433
No 142
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.76 Score=49.93 Aligned_cols=86 Identities=17% Similarity=0.297 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHH
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKV 274 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~ 274 (475)
..|.-+-.+-.+.|.+.+|++-|-+. -|...|.-+|+.+.+.|.+++-.+++...+++ .-+|.+. +.||-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHH
Confidence 36999999999999999998877542 37789999999999999999999988777644 6677654 789999
Q ss_pred HHhcCCHHHHHHHHH
Q 038373 275 LGSAGHLIEAEEFVE 289 (475)
Q Consensus 275 ~~~~g~~~~A~~~~~ 289 (475)
|++.+++.+-++++.
T Consensus 1176 yAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA 1190 (1666)
T ss_pred HHHhchHHHHHHHhc
Confidence 999999999888764
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.56 E-value=0.04 Score=54.56 Aligned_cols=95 Identities=8% Similarity=-0.089 Sum_probs=53.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHH
Q 038373 139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLM 215 (475)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~ 215 (475)
...|+++.|.+.|.+.++.. .-+...|..+-.+|.+.|++++|...+++..+ | +...|..+-.+|...|++++|+.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455666666666655543 33455555555666666666666666665542 2 44456666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHH
Q 038373 216 LFEQMRKTGPHPDKETFLVVF 236 (475)
Q Consensus 216 l~~~M~~~g~~pd~~t~~~li 236 (475)
.|++..+ +.|+...+...+
T Consensus 92 ~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 92 ALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHH--hCCCCHHHHHHH
Confidence 6666655 344444443333
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.55 E-value=0.0086 Score=45.58 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=36.9
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HHHHHHHHHHHhcCCHHHH
Q 038373 207 NGQGADGLMLFEQMRKTGP-HPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EHYIAIIKVLGSAGHLIEA 284 (475)
Q Consensus 207 ~g~~~~A~~l~~~M~~~g~-~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~y~~li~~~~~~g~~~~A 284 (475)
.|++++|+.+|+++.+... .|+...+-.+..++.+.|++++|..+++. . ...++. ...-.+-.+|.+.|+.++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3555666666666555332 12233333355555666666666666555 1 111211 1222334555566666666
Q ss_pred HHHHH
Q 038373 285 EEFVE 289 (475)
Q Consensus 285 ~~~~~ 289 (475)
.++|+
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66554
No 145
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.54 E-value=0.029 Score=51.85 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhc-CChHHHHHHHHHH
Q 038373 142 KSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAAN-GQGADGLMLFEQM 220 (475)
Q Consensus 142 ~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~-g~~~~A~~l~~~M 220 (475)
+.++--...++.|.+.|++.|..+|+.||+.+=|-.-+ .-|.+=..|..- .+-+-++.++++|
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~nvfQ~~F~HYP~QQ~C~I~vLeqM 149 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQNVFQKVFLHYPQQQNCAIKVLEQM 149 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cHHHHHHHHhhCchhhhHHHHHHHHH
Confidence 34555555678899999999999999999987653211 111111222222 1234589999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHh
Q 038373 221 RKTGPHPDKETFLVVFAACASAEAV-KEGFLYFEIMK 256 (475)
Q Consensus 221 ~~~g~~pd~~t~~~li~~~~~~g~~-~~a~~~~~~m~ 256 (475)
...|+.||..+--.|++++.+.+-- .+..++.-.|-
T Consensus 150 E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 150 EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999999999999999999887643 33444444454
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.53 E-value=0.087 Score=46.19 Aligned_cols=58 Identities=16% Similarity=0.007 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK--RN----LSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.+..+...|.+.|++++|...|++..+ ++ ...|..+...|.+.|++++|...+++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555555555554431 11 23455555555555555555555555544
No 147
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.38 Score=52.10 Aligned_cols=199 Identities=14% Similarity=0.105 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
...|.-+-.+-.+.|.+.+|.+-|-+. -|+..|.-+|..+.+.|.+++-.+.+...++..-+|.+ -+.||-+|+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyA 1177 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYA 1177 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHH
Confidence 345777777777777777777766544 35677999999999999999999998888877766654 468999999
Q ss_pred HcCCHHHHHHHHHhccc-----------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038373 175 KCCNTRLARKVFDQLRK-----------------------RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET 231 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~-----------------------~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 231 (475)
|.+++.+-+++...-.. .++.-|.-|-..+...|++..|..--++. -+..|
T Consensus 1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~kt 1251 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKT 1251 (1666)
T ss_pred HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhH
Confidence 99999887765432100 12334444555555555555555443321 24456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 038373 232 FLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALRNFAQI 309 (475)
Q Consensus 232 ~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~ 309 (475)
|--+-.+|...+.+.-| +|. ...+..-..-..-||.-|-..|-+++-..+++.- |++ ...-.|+-|--.|.+
T Consensus 1252 WK~VcfaCvd~~EFrlA-----QiC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QIC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHhchhhhhHH-----Hhc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 66666666655554433 333 1122223334567888888889888888888765 544 344556666666776
Q ss_pred cC
Q 038373 310 HG 311 (475)
Q Consensus 310 ~g 311 (475)
..
T Consensus 1326 yk 1327 (1666)
T KOG0985|consen 1326 YK 1327 (1666)
T ss_pred cC
Confidence 54
No 148
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.48 E-value=0.61 Score=45.23 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVL 275 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~ 275 (475)
+-+..|.-+...|+...|.++-++.. .||..-|-..|.+++..++|++-.++... + + ..+-|-..++.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-K-----sPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-K-----SPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-C-----CCCChHHHHHHH
Confidence 44445566666777777777766652 46777777777777777777766654332 1 1 235677777777
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHH
Q 038373 276 GSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELED 317 (475)
Q Consensus 276 ~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~ 317 (475)
.+.|+..+|..++.+++ +..-+..|.+.|++.+|.
T Consensus 248 ~~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHH
Confidence 77777777777777643 233455566667765543
No 149
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.43 E-value=0.26 Score=53.94 Aligned_cols=141 Identities=11% Similarity=0.024 Sum_probs=100.7
Q ss_pred hcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHH
Q 038373 120 QDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHL 199 (475)
Q Consensus 120 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~ 199 (475)
.+...+-+...+-.+-.+|-+.|+.+++.++|+++++.. .-|..+.|-+-..|+.. ++++|.+++.+..+.
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------- 178 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------- 178 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------
Confidence 343333444667778888889999999999999999988 67899999999999999 999999998765433
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-------------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCC
Q 038373 200 MISGYAANGQGADGLMLFEQMRKT-------------------GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYG 260 (475)
Q Consensus 200 li~~~~~~g~~~~A~~l~~~M~~~-------------------g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g 260 (475)
|...+++.+++++|.++... |..--..++--|-..|....+++++..+++.+. .
T Consensus 179 ----~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL---~ 251 (906)
T PRK14720 179 ----FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL---E 251 (906)
T ss_pred ----HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH---h
Confidence 45555666666666665542 222233444455577778888999999999988 3
Q ss_pred CcC-CHHHHHHHHHHHH
Q 038373 261 IVP-GIEHYIAIIKVLG 276 (475)
Q Consensus 261 ~~p-~~~~y~~li~~~~ 276 (475)
..| |.....-|+..|.
T Consensus 252 ~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 252 HDNKNNKAREELIRFYK 268 (906)
T ss_pred cCCcchhhHHHHHHHHH
Confidence 344 4445555666554
No 150
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.42 E-value=0.099 Score=45.61 Aligned_cols=79 Identities=8% Similarity=-0.144 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
...|..+...+...|++++|+..|++.....|+ ..++..+-..+...|+.++|.+.+....+.. +....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 345566666666777777777777765432222 1245555556666666666666666665442 22233344444
Q ss_pred HHHH
Q 038373 171 EMYG 174 (475)
Q Consensus 171 ~~~~ 174 (475)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 151
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.35 Score=49.35 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=85.1
Q ss_pred HHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHH--H
Q 038373 101 NLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL--IEMYG--K 175 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L--i~~~~--k 175 (475)
=++-+...|++++|++.-.+.....||..+ +..=+-+..+.+.+++|..+.+ ..+ -..+++.. =.+|| +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK---KNG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcc---hhhhcchhhHHHHHHHHH
Confidence 456678889999999999887776676554 6666667788888998885544 222 12233333 45565 6
Q ss_pred cCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373 176 CCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGP 225 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~ 225 (475)
.+..|+|...++....-|..+-..=-..+-+.|++++|+.+|+.+.+.+.
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 78999999999966555554555555667889999999999999977654
No 152
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.54 Score=44.05 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=118.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHH
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL-IEMYGK 175 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L-i~~~~k 175 (475)
+++.|..+.+..++++|.+++..-....| +....+.|-.+|-...++..|-..++++-.. .|...-|.-- -..+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 45666677888899999999875544445 6666888888888999999999999988654 4555444322 234567
Q ss_pred cCCHHHHHHHHHhccc-CCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373 176 CCNTRLARKVFDQLRK-RNLSSWHLMISG--YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~-~~~~tyn~li~~--~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~ 252 (475)
++.+.+|.+|...|.. ++...-..=+.+ .-..+++..+..++++...+| +..+.+..--..-+.|+.++|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHH
Confidence 8889999999988875 332221111111 223566666777776654332 2222222222234677788888777
Q ss_pred HHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 253 ~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+...+-.|+.|-+ .||.-+.- -+.|+.+.|+++..++
T Consensus 168 qaAlqvsGyqpll-AYniALaH-y~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 168 QAALQVSGYQPLL-AYNLALAH-YSSRQYASALKHISEI 204 (459)
T ss_pred HHHHhhcCCCchh-HHHHHHHH-HhhhhHHHHHHHHHHH
Confidence 7777666666643 56655543 3456777777776654
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.40 E-value=0.13 Score=49.13 Aligned_cols=201 Identities=16% Similarity=0.171 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccc----CC-CCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDAS----AS-AGY--DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL 169 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~----~~-p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L 169 (475)
.|+-.-..|-..|++++|.+.|.+... .+ +.. ..|......+-+. ++++|.+. |.-.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~---------------~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC---------------YEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH---------------HHHH
Confidence 466666677777778877777764321 11 111 1133322222222 44444444 3444
Q ss_pred HHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHcc
Q 038373 170 IEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAAN-GQGADGLMLFEQMRK----TGPHPD--KETFLVVFAACASA 242 (475)
Q Consensus 170 i~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~-g~~~~A~~l~~~M~~----~g~~pd--~~t~~~li~~~~~~ 242 (475)
+..|.+.|++..|-+++.++ -..|-.. |++++|++.|++-.+ .| .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l-----------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL-----------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH-----------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 56677777777776665543 3345555 677777777776543 23 221 23556667778888
Q ss_pred CCHHHHHHHHHHHhhhCCC-----cCCHH-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHH
Q 038373 243 EAVKEGFLYFEIMKNDYGI-----VPGIE-HYIAIIKVLGSAGHLIEAEEFVERM-PFEP------TVEVWEALRNFAQI 309 (475)
Q Consensus 243 g~~~~a~~~~~~m~~~~g~-----~p~~~-~y~~li~~~~~~g~~~~A~~~~~~m-~~~p------~~~t~~~li~~~~~ 309 (475)
|++++|.++|+++... -. ..++. .|-..+-.+...|+...|.+.|++. ...| ....-..||.+|-
T Consensus 169 ~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~- 246 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE- 246 (282)
T ss_dssp T-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-
Confidence 8999999888887643 22 12222 2222333555578888888888876 2222 2334455566654
Q ss_pred cCCchHHHHHHHHHhccC
Q 038373 310 HGDVELEDRAEELLGDLD 327 (475)
Q Consensus 310 ~g~~~~a~~~~~~l~~~~ 327 (475)
.|+.+....+...+..+.
T Consensus 247 ~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS
T ss_pred hCCHHHHHHHHHHHcccC
Confidence 677776666666665554
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.38 E-value=0.016 Score=44.02 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 038373 169 LIEMYGKCCNTRLARKVFDQ 188 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~ 188 (475)
+..+|.+.|+.++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 34444444444444444433
No 155
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.36 E-value=0.027 Score=52.02 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=78.4
Q ss_pred HHHHHHHhcc--cCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------
Q 038373 181 LARKVFDQLR--KRNLSSWHLMISGYAAN-----GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE---------- 243 (475)
Q Consensus 181 ~A~~~f~~m~--~~~~~tyn~li~~~~~~-----g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g---------- 243 (475)
-.++.|...+ ++|-.+|-+++..|... +.++-....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 67777888888777654 556777777889999999999999999998875532
Q ss_pred ------CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCH
Q 038373 244 ------AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHL 281 (475)
Q Consensus 244 ------~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~ 281 (475)
.-+=+..++++|+ .+|+.||-.+-..||+++++.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 1234678999999 679999999999999999999874
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.23 E-value=0.15 Score=52.99 Aligned_cols=136 Identities=7% Similarity=-0.016 Sum_probs=91.4
Q ss_pred CCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHHhcc-
Q 038373 126 AGYDVFSSLLDSCGNL-----KSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKC--------CNTRLARKVFDQLR- 190 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~--------g~~~~A~~~f~~m~- 190 (475)
.|...|...+.+.... ++.+.|..+|++..+. .|| ...|..|..+|... +++..+.+..+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5667788888875433 2367888888888876 354 44454443333221 12444555544422
Q ss_pred ----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHH
Q 038373 191 ----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIE 266 (475)
Q Consensus 191 ----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 266 (475)
..+...|.++--.....|++++|...|++..+.. |+...|..+-..+...|+.++|.+.+++.. .+.|...
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~---~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF---NLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCCCc
Confidence 1244677777666667899999999999988744 788889999999999999999999988876 3455544
Q ss_pred HH
Q 038373 267 HY 268 (475)
Q Consensus 267 ~y 268 (475)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
No 157
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.21 E-value=1.2 Score=42.61 Aligned_cols=224 Identities=13% Similarity=0.046 Sum_probs=154.6
Q ss_pred HHHcCChHHHHHHHHhcccCCCCHH----------------HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 105 LCKEGKVREAIEYMGQDASASAGYD----------------VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 105 ~~~~g~~~~A~~l~~~~~~~~p~~~----------------t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
+.+.|.+++|..=|+......|+.. .....+..+...|+...|......+++.. .-|...|-.
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 6789999999998887655444221 12334555667789999999999998865 578889999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHH------
Q 038373 169 LIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET----FLVV------ 235 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t----~~~l------ 235 (475)
--.+|...|++..|..=+.... .-|+.+.--+-.-+...|+.+.++...++-.+ +.||... |-.|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999987665443 34666666666777888999999988888766 5676532 1111
Q ss_pred ---HHHHHccCCHHHHHHHHHHHhhhCCCcCCHHH---HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 038373 236 ---FAACASAEAVKEGFLYFEIMKNDYGIVPGIEH---YIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFA 307 (475)
Q Consensus 236 ---i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~ 307 (475)
+......++|-++.+-.+...+. .-.-..+. +..+-..|...|++-+|.+.-.+. .+.|| +.++.-=..+|
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 11223456666666666555422 22212233 345666778889999998877666 55565 66766666788
Q ss_pred HHcCCchHHHHHHHHHhccCCCChh
Q 038373 308 QIHGDVELEDRAEELLGDLDPSKAI 332 (475)
Q Consensus 308 ~~~g~~~~a~~~~~~l~~~~~~~~~ 332 (475)
.-..+.+.|..-++.-.+.++++..
T Consensus 352 l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcCcccHH
Confidence 8788888888888888888777653
No 158
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.20 E-value=0.41 Score=49.42 Aligned_cols=174 Identities=7% Similarity=0.045 Sum_probs=97.1
Q ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 112 REAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 112 ~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
+.++-++.+|.+ .|-.-+....+.+++..-...|+..+.. -+.-...+|.-.|...-..|-.+-+.+++++-.
T Consensus 92 er~lv~mHkmpR------Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 92 ERCLVFMHKMPR------IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHhcCCH------HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 444555555533 3444444455666666666666655443 333334455666666666666667777776665
Q ss_pred cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC
Q 038373 191 KRNLSSWHLMISGYAANGQGADGLMLFEQMRKT------GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG 264 (475)
Q Consensus 191 ~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~------g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 264 (475)
+-+...-+--|.-+++.+++++|-+.+...... .-+-+...|.-+-+-.++..+.-....+=..|+.-.+.-+|
T Consensus 166 k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD 245 (835)
T KOG2047|consen 166 KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD 245 (835)
T ss_pred hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH
Confidence 544444555666667777777776666554331 12334455555555555555444433333333321133344
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 265 --IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 265 --~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
...|++|.+-|.+.|++++|.++|++-
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 245677777788888888888777664
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.19 E-value=0.077 Score=52.53 Aligned_cols=92 Identities=13% Similarity=0.028 Sum_probs=47.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHH
Q 038373 204 YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLI 282 (475)
Q Consensus 204 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~ 282 (475)
+...|++++|+++|++..+... -+...|..+-.++.+.|++++|...++.... +.| +...|..+-.+|...|+++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666655554321 1334455555555556666666666555552 233 3344555555556666666
Q ss_pred HHHHHHHhC-CCCCCHHH
Q 038373 283 EAEEFVERM-PFEPTVEV 299 (475)
Q Consensus 283 ~A~~~~~~m-~~~p~~~t 299 (475)
+|.+.|++. .+.|+...
T Consensus 88 eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 666666554 33344333
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.08 E-value=0.04 Score=39.76 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=26.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
.|++++|.++++.+.+.. +-+..+.-.|..+|.+.|++++|.++++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555443 2244555555555555566666666555554
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.08 E-value=0.15 Score=44.51 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHP--DKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.|..+...+...|++++|+..|++.......| ...+|..+-..+...|+.++|...++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555555566666666665554432111 12345555555556666666666665554
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.00 E-value=0.03 Score=40.38 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=31.2
Q ss_pred ccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038373 241 SAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEAL 303 (475)
Q Consensus 241 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~l 303 (475)
+.|++++|.++|+.+... .| +...+-.+...|.+.|++++|.++++++ ...|+...|..|
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345556666666655532 22 3444455666666666666666666666 334554444443
No 163
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.00 E-value=0.33 Score=50.46 Aligned_cols=141 Identities=8% Similarity=-0.024 Sum_probs=96.6
Q ss_pred cCCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcC--------ChHHHHHHHHHH
Q 038373 157 SAFVKDVELNNKLIEMYGK--CC---NTRLARKVFDQLRK--RN-LSSWHLMISGYAANG--------QGADGLMLFEQM 220 (475)
Q Consensus 157 ~g~~p~~~~~~~Li~~~~k--~g---~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g--------~~~~A~~l~~~M 220 (475)
.+...|...|...+.+... .+ ..+.|..+|++..+ || ...|..+..+|.... +...+.+...+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4457888999999887554 33 37899999998874 54 345555444443321 123334444433
Q ss_pred HHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH
Q 038373 221 RKT-GPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVE 298 (475)
Q Consensus 221 ~~~-g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 298 (475)
... ....+...|..+--.....|++++|...+++.. .+.|+...|..+-..|...|+.++|.+.+++- .+.|...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 332 233355677766555556799999999999988 34578889999999999999999999999876 4455555
Q ss_pred HH
Q 038373 299 VW 300 (475)
Q Consensus 299 t~ 300 (475)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 54
No 164
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.38 Score=45.02 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=77.1
Q ss_pred HHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------------CCH-----
Q 038373 172 MYGKCCNTRLARKVFDQLRK----RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-------------PDK----- 229 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-------------pd~----- 229 (475)
...+.|+.+.|.+-|....+ ...+.||.-+..| +.|+.+.|+++..|..+.|++ ||+
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 34467777777777776553 2456777666544 456777788877777776643 221
Q ss_pred -HH--HHHHHHHH-------HccCCHHHHHHHHHHHhhhCCCcCCHHHH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373 230 -ET--FLVVFAAC-------ASAEAVKEGFLYFEIMKNDYGIVPGIEHY--IAIIKVLGSAGHLIEAEEFVERM-PFEPT 296 (475)
Q Consensus 230 -~t--~~~li~~~-------~~~g~~~~a~~~~~~m~~~~g~~p~~~~y--~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 296 (475)
.+ -+.++.++ -+.|+.+.|.+.+-.|-.+..-+.|.+|. -+|.++=++-|.--+-+.++-+. ++ -
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPf--P 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPF--P 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCC--C
Confidence 11 12233332 35667777777766665333333333333 34444444334333333333333 32 2
Q ss_pred HHHHHHHHHHHHHcCCchHH
Q 038373 297 VEVWEALRNFAQIHGDVELE 316 (475)
Q Consensus 297 ~~t~~~li~~~~~~g~~~~a 316 (475)
..||..++-.||++.-++.|
T Consensus 310 ~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHH
Confidence 35666677777777766443
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.89 E-value=2.2 Score=45.83 Aligned_cols=195 Identities=13% Similarity=0.088 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHH--HHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 92 NAQLESLDVNLLS--LCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 92 ~~~~~~~n~li~~--~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
.|+. .|...+.+ +.|.|+.++|..+++.....+ -|..|..++-.+|-..++.++|..+|++..+. -|+......
T Consensus 39 ~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~ 115 (932)
T KOG2053|consen 39 HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYH 115 (932)
T ss_pred CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHH
Confidence 3444 34445555 458899999998888654433 47788999999999999999999999988765 577778888
Q ss_pred HHHHHHHcCCHHH----HHHHHHhcccCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcC-CCCCHHHHH
Q 038373 169 LIEMYGKCCNTRL----ARKVFDQLRKRNLSSWHLMISGYAANGQ----------GADGLMLFEQMRKTG-PHPDKETFL 233 (475)
Q Consensus 169 Li~~~~k~g~~~~----A~~~f~~m~~~~~~tyn~li~~~~~~g~----------~~~A~~l~~~M~~~g-~~pd~~t~~ 233 (475)
+..+|.|.+++.+ |.+++...++.--.-|+ +|+-+.+.-. ..-|.+.++.+.+.+ -.-+..-.-
T Consensus 116 lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~ 194 (932)
T KOG2053|consen 116 LFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEII 194 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHH
Confidence 8889999887665 55566655544444444 3444433211 123556666666554 222222233
Q ss_pred HHHHHHHccCCHHHHHHHHH-HHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 234 VVFAACASAEAVKEGFLYFE-IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 234 ~li~~~~~~g~~~~a~~~~~-~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.-+..+...|++++|.+++. ...++ -..-+...-+--++.+...+++.+-.++-.+.
T Consensus 195 Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 195 LYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 33344566788999999884 33322 22223444456778888899888877665555
No 166
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.54 Score=43.30 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=33.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
.+.++..+-..+.+.-...++.+.++..-+.++.....|..+-.+.|+++.|...|+..+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444555555555566665555444555556666666666666666666666443
No 167
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.85 E-value=3.4 Score=44.57 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=122.7
Q ss_pred HHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373 105 LCKEGKVREAIEYMGQDASASAGYDVFSSLLDSC--GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 105 ~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A 182 (475)
....+++.+|++...+..+.-||. .|..+++++ .+.|..++|..+++.....+.. |..|..+|-.+|-+.|+.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 456788999999888766655775 477777776 5789999999888888766633 999999999999999999999
Q ss_pred HHHHHhccc--CCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------CHH
Q 038373 183 RKVFDQLRK--RNLSSWHLMISGYAANGQGAD----GLMLFEQMRKTGPHPDKETFLVVFAACASAE----------AVK 246 (475)
Q Consensus 183 ~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~----A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g----------~~~ 246 (475)
..+|+...+ |+..--..+..+|.+.+.+.+ |+++++. +.-+...|=++++.....- -+.
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999998874 665566667778888877654 4555542 2234455555555543321 134
Q ss_pred HHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038373 247 EGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVE 289 (475)
Q Consensus 247 ~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~ 289 (475)
-|.+.++.+.++.| ... ..-.-.-...+-..|+.++|.+++.
T Consensus 172 LA~~m~~~~l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKG-KIESEAEIILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred HHHHHHHHHhccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 56777777776644 222 2112222344567788999999983
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.82 E-value=0.21 Score=40.84 Aligned_cols=106 Identities=11% Similarity=0.113 Sum_probs=72.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc
Q 038373 202 SGYAANGQGADGLMLFEQMRKTGPHPD--KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA 278 (475)
Q Consensus 202 ~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~ 278 (475)
.++-..|+.++|+.+|++-...|+... ...+..+-+.+...|+.++|..+++....++.-.+ +......+--++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 456678999999999999988887665 34666777888899999999999988875421101 111222233467888
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038373 279 GHLIEAEEFVERMPFEPTVEVWEALRNFAQ 308 (475)
Q Consensus 279 g~~~~A~~~~~~m~~~p~~~t~~~li~~~~ 308 (475)
|+.++|.+.+-..- -++...|.--|.+|.
T Consensus 89 gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 89 GRPKEALEWLLEAL-AETLPRYRRAIRFYA 117 (120)
T ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 99999988875541 234446666666654
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.80 E-value=0.13 Score=48.17 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=77.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCH
Q 038373 204 YAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHL 281 (475)
Q Consensus 204 ~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~ 281 (475)
..+++++.+|+..|.+-++ +.| |.+-|..--.+|++.|.++.|.+=.+... .+.|. ..+|..|=-+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 5678899999999999887 455 66777888889999999999887666555 34553 56788888899999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHH
Q 038373 282 IEAEEFVERM-PFEPTVEVWEALRN 305 (475)
Q Consensus 282 ~~A~~~~~~m-~~~p~~~t~~~li~ 305 (475)
++|.+.|++- .+.|+-.+|-.=|.
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999998887 78888888766554
No 170
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.78 E-value=0.63 Score=47.13 Aligned_cols=126 Identities=14% Similarity=0.189 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHH
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK 273 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~ 273 (475)
.+|-.+|+.--+..-+..|..+|.+..+.+..+ ++..++++|.-+|. ++.+-|.++|+-=.+++|=.| .--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p--~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSP--EYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence 366667776666666777888888888877777 67777777777764 566777777776443444332 22356777
Q ss_pred HHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 274 VLGSAGHLIEAEEFVERM---PFEPT--VEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 274 ~~~~~g~~~~A~~~~~~m---~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
-+..-++=..|..+|++. ++.|| ...|..+|..=...|+++.+.++.+..
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777778877888888777 22332 467888888777778876655554443
No 171
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.75 E-value=0.93 Score=47.25 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=111.5
Q ss_pred hHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCC--------CHHHHHHHHHHHHHcCCHHH
Q 038373 111 VREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRT-SAFVK--------DVELNNKLIEMYGKCCNTRL 181 (475)
Q Consensus 111 ~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~p--------~~~~~~~Li~~~~k~g~~~~ 181 (475)
.++|.++.++ .|-+.-|..|-.+....-.++.|...|-+... .|++. +...-.+=|.+|. |++++
T Consensus 679 ledA~qfiEd----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~--g~fee 752 (1189)
T KOG2041|consen 679 LEDAIQFIED----NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY--GEFEE 752 (1189)
T ss_pred hHHHHHHHhc----CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh--cchhH
Confidence 3444444433 36677777776666566667777666654432 13321 1122233344443 89999
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373 182 ARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP----DKETFLVVFAACASAEAVKEGFLYFEIMKN 257 (475)
Q Consensus 182 A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p----d~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 257 (475)
|+++|-+|.++|.. |.-+.+.|++-...++++. -|-.- -...|+.+-..+.....|++|.+.+..-..
T Consensus 753 aek~yld~drrDLA-----ielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 753 AEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999988853 5566777877666666542 11111 135777888888888888888887764431
Q ss_pred hCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 038373 258 DYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAE 320 (475)
Q Consensus 258 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 320 (475)
. .-+|++|.+..++++-+.+-..++ -|....-.|-+.+...|+-++|.+++
T Consensus 825 -------~---e~~~ecly~le~f~~LE~la~~Lp--e~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 825 -------T---ENQIECLYRLELFGELEVLARTLP--EDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred -------h---HhHHHHHHHHHhhhhHHHHHHhcC--cccchHHHHHHHHHhhchHHHHHHHH
Confidence 1 345667777777777776666664 24444455666777777775554443
No 172
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.72 E-value=2.3 Score=44.18 Aligned_cols=218 Identities=15% Similarity=0.144 Sum_probs=121.1
Q ss_pred HHHcCChHHHHHHHHhcccCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 038373 105 LCKEGKVREAIEYMGQDASASAGYDVFS-SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL-IEMYGKCCNTRLA 182 (475)
Q Consensus 105 ~~~~g~~~~A~~l~~~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L-i~~~~k~g~~~~A 182 (475)
..++|.+++|++.+..-...-.|.+.|- +--..+.+.+++++|..++..++... ||-.-|+-. ..++++.-+.-++
T Consensus 195 ~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~ 272 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEA 272 (700)
T ss_pred HHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHH
Confidence 5567777788777654333223444432 23334567778888888888777663 555555443 4455444444444
Q ss_pred H-HHHHhccc----------------------------------CCH-HHHHHHHHHHHhcCChHH----HHHHHHHHHH
Q 038373 183 R-KVFDQLRK----------------------------------RNL-SSWHLMISGYAANGQGAD----GLMLFEQMRK 222 (475)
Q Consensus 183 ~-~~f~~m~~----------------------------------~~~-~tyn~li~~~~~~g~~~~----A~~l~~~M~~ 222 (475)
. .+|....+ +++ .++..+.+-|-.-...+- +..+..-+..
T Consensus 273 lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~ 352 (700)
T KOG1156|consen 273 LKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSG 352 (700)
T ss_pred HHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccc
Confidence 4 55554431 000 133333333322221111 1111111211
Q ss_pred cCC----------CCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 038373 223 TGP----------HPDKE--TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EHYIAIIKVLGSAGHLIEAEEFVE 289 (475)
Q Consensus 223 ~g~----------~pd~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~~~~ 289 (475)
.|. .|.+. |+-.++..+-+.|+++.|..+.+... +..|+. ..|-+=-..+...|++++|..+++
T Consensus 353 ~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ 429 (700)
T KOG1156|consen 353 TGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLD 429 (700)
T ss_pred ccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 111 34444 44456777788899999998888877 556653 344445577888899999999988
Q ss_pred hC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373 290 RM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD 327 (475)
Q Consensus 290 ~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~ 327 (475)
+. ++ .+|...-.-=.....+..+.++|+++..++.+-.
T Consensus 430 ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 430 EAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 77 21 3455443333445556778877777777765543
No 173
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.68 E-value=1.2 Score=42.76 Aligned_cols=143 Identities=13% Similarity=0.182 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHhccc------
Q 038373 126 AGYDVFSSLLDSCGN--LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK--CC----NTRLARKVFDQLRK------ 191 (475)
Q Consensus 126 p~~~t~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k--~g----~~~~A~~~f~~m~~------ 191 (475)
....++.++|..-.. ...+++...+++.|++.|+..+.++|-+..-..-. .. .+..|..+|+.|++
T Consensus 58 ~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT 137 (297)
T PF13170_consen 58 NHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT 137 (297)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc
Confidence 455667777766554 13367788999999999999998888774444333 22 37789999999985
Q ss_pred -CCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC---HHHHHHHHHHHhhhCCCc
Q 038373 192 -RNLSSWHLMISGYAANGQ----GADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEA---VKEGFLYFEIMKNDYGIV 262 (475)
Q Consensus 192 -~~~~tyn~li~~~~~~g~----~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~g~~ 262 (475)
++-+++.+|+.. ..++ .+++...|+.+.+.|+..+ ..-+.+-|-+++.... +.++.++++.++++ |++
T Consensus 138 s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~k 214 (297)
T PF13170_consen 138 SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVK 214 (297)
T ss_pred CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCc
Confidence 355678788765 3333 3667888999999898764 4344444445443222 55788889999955 999
Q ss_pred CCHHHHHHH
Q 038373 263 PGIEHYIAI 271 (475)
Q Consensus 263 p~~~~y~~l 271 (475)
+...+|..+
T Consensus 215 ik~~~yp~l 223 (297)
T PF13170_consen 215 IKYMHYPTL 223 (297)
T ss_pred cccccccHH
Confidence 888777643
No 174
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.65 E-value=1.1 Score=43.53 Aligned_cols=208 Identities=13% Similarity=0.066 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCC---C---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----------CC
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASAS---A---GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSA----------FV 160 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~---p---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----------~~ 160 (475)
+|..+-..-.+.|+.+-|..|++.-.... | .-.-+...|.-..+.|+.+....++-.|.+.- -.
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~l~~s~f~~il~~~ 81 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLELEPRASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRKLSLSQFFKILNQN 81 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHHcCCChHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 56666667778888888888876432200 0 00013444455556666666666655554421 01
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---------------CHH----HHHHHHHHHHhcCC-------hHHHH
Q 038373 161 KDVELNNKLIEMYGKCCNTRLARKVFDQLRKR---------------NLS----SWHLMISGYAANGQ-------GADGL 214 (475)
Q Consensus 161 p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---------------~~~----tyn~li~~~~~~g~-------~~~A~ 214 (475)
|. -+.|..-||+..+.+.-..+|.+-.+. ++. ........|.+..+ .++..
T Consensus 82 p~---a~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~k~~~f~~~~~e~q~ 158 (319)
T PF04840_consen 82 PV---ASNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKSKNDAFEAKLIEEQI 158 (319)
T ss_pred cc---hHHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 11 234555566655555555554433211 111 11122222333222 22222
Q ss_pred HHHHHHHH----cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 215 MLFEQMRK----TGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 215 ~l~~~M~~----~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
++++.-.+ .+......+.+..|.-|...|....|.++-. ++++ ||..-|-.-|.+|+..|++++-.++-..
T Consensus 159 ~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s 233 (319)
T PF04840_consen 159 KLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS 233 (319)
T ss_pred HHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC
Confidence 33322211 1111122244444555555666655555433 3333 5666666667777777776666655432
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCchH
Q 038373 291 MPFEPTVEVWEALRNFAQIHGDVEL 315 (475)
Q Consensus 291 m~~~p~~~t~~~li~~~~~~g~~~~ 315 (475)
+...+-|-.++.+|.+.|+..+
T Consensus 234 ---kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 234 ---KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred ---CCCCCChHHHHHHHHHCCCHHH
Confidence 2233566666666666666633
No 175
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.57 E-value=0.46 Score=47.51 Aligned_cols=66 Identities=12% Similarity=0.025 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYD----VFSSLLDSCGNLKSIEMGKRVHELLRTS 157 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 157 (475)
..+...|+.+-.+|.+.|++++|+..|++.....|+.. +|..+-.+|++.|++++|.+.++...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46678899999999999999999999999887778753 5899999999999999999999999875
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.53 E-value=0.94 Score=43.23 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhhhCCC--cC--CHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA-EAVKEGFLYFEIMKNDYGI--VP--GIEHYIA 270 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~~g~--~p--~~~~y~~ 270 (475)
.|.-.+..|...|++..|-+++.++- ..|-.. |++++|.+.|....+-+.- .+ -..++..
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~ 160 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLK 160 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHH
Confidence 45566777888888888877776654 355566 7899998888776532111 11 1345677
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC---C-----CCCHHH--HHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373 271 IIKVLGSAGHLIEAEEFVERMP---F-----EPTVEV--WEALRNFAQIHGDVELEDRAEELLGDLDP 328 (475)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~m~---~-----~p~~~t--~~~li~~~~~~g~~~~a~~~~~~l~~~~~ 328 (475)
+...+.+.|++++|.++|++.+ . +.++.. .+++| .+...|+...|.++++.+.+..|
T Consensus 161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC
Confidence 8889999999999999999872 1 112221 23333 44557888788888887766543
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.49 E-value=0.55 Score=40.11 Aligned_cols=88 Identities=7% Similarity=0.029 Sum_probs=53.3
Q ss_pred HHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 038373 170 IEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVK 246 (475)
Q Consensus 170 i~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~ 246 (475)
-.-+...|++++|.++|+-.. .| +..-|-.|-..|-..|++++|+..|.....-.. -|...+-.+-.++...|+.+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHH
Confidence 334556677777777776544 33 444556666666666777777777766665432 24455555566666667777
Q ss_pred HHHHHHHHHhhh
Q 038373 247 EGFLYFEIMKND 258 (475)
Q Consensus 247 ~a~~~~~~m~~~ 258 (475)
.|.+.|+.....
T Consensus 121 ~A~~aF~~Ai~~ 132 (157)
T PRK15363 121 YAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777766665543
No 178
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=1 Score=44.19 Aligned_cols=154 Identities=12% Similarity=0.039 Sum_probs=110.4
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHH-HHHHhcCC-hH
Q 038373 137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMI-SGYAANGQ-GA 211 (475)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li-~~~~~~g~-~~ 211 (475)
.+...++.++|.=-|+...... +-+...|-.|++.|.-.|++.+|.-+-++.- ..+..+.+.+- ..+.-... -+
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHH
Confidence 3456688888888888776653 3578899999999999999999887655432 12333332221 11222222 36
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 212 DGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 212 ~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
+|..+++.-.. +.|+-. ..+.+..-|...|..+++..+++.-. ...||...-+.|-+.+.....+.+|++.|..
T Consensus 422 KAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L---~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 422 KAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL---IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH---hhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 78877776544 567654 56667778889999999999999877 3568999999999999999999999999876
Q ss_pred C-CCCCC
Q 038373 291 M-PFEPT 296 (475)
Q Consensus 291 m-~~~p~ 296 (475)
. .+.|+
T Consensus 497 ALr~dP~ 503 (564)
T KOG1174|consen 497 ALRQDPK 503 (564)
T ss_pred HHhcCcc
Confidence 5 44444
No 179
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=1 Score=46.12 Aligned_cols=176 Identities=11% Similarity=0.050 Sum_probs=113.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHH--HHHHH--hcC
Q 038373 133 SLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLM--ISGYA--ANG 208 (475)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~l--i~~~~--~~g 208 (475)
+=|+-+.+.+++++|.+....++..+ +-|...+..=+-+..+.+++++|+.+.+.-. -..++|.. =.+|| +.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~--~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG--ALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc--hhhhcchhhHHHHHHHHHcc
Confidence 34566778899999999999998877 5666677777778899999999997665432 22344444 55666 578
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHH-HHHhcCCHHHHHH
Q 038373 209 QGADGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK-VLGSAGHLIEAEE 286 (475)
Q Consensus 209 ~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~-~~~~~g~~~~A~~ 286 (475)
+.++|+..++ |+.++.. +...--..|-+.|++++|..+|..+.+. +. +| |...+. .+...+-.-.+.
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~-dd---~d~~~r~nl~a~~a~l~~~- 162 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NS-DD---QDEERRANLLAVAAALQVQ- 162 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC-ch---HHHHHHHHHHHHHHhhhHH-
Confidence 8999999887 5555544 5555556788999999999999999732 32 22 222111 122222222222
Q ss_pred HHHhCCCCCCHHHHHHHHH---HHHHcCCchHHHHHHHHH
Q 038373 287 FVERMPFEPTVEVWEALRN---FAQIHGDVELEDRAEELL 323 (475)
Q Consensus 287 ~~~~m~~~p~~~t~~~li~---~~~~~g~~~~a~~~~~~l 323 (475)
+.+..+..| ..||..+-+ .+...|++..|++.++.-
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 455555555 335555443 234468887776665544
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.40 E-value=0.061 Score=38.43 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.|.+.|++++|.+.|++..+ | +...|..+-..+...|++++|..+|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555554442 2 233444455555555555555555555443
No 181
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.33 E-value=0.12 Score=43.80 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK-----TGPHPDKET 231 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t 231 (475)
+...++..+...|+.++|.++.+.... | |-..|-.+|.+|...|+..+|+++|+++.. -|+.|+..|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 445556666666777777777666553 3 455677777777777777777776666532 366665544
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.17 E-value=0.36 Score=41.21 Aligned_cols=84 Identities=14% Similarity=-0.004 Sum_probs=47.3
Q ss_pred HHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373 104 SLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A 182 (475)
-+.+.|++++|..+|+-.....|.... |-.|--+|-..|++++|...|....... .-|...+--+-.+|.+.|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 455666666666666654443344443 3333334444566666666666666555 34555555555666666666666
Q ss_pred HHHHHh
Q 038373 183 RKVFDQ 188 (475)
Q Consensus 183 ~~~f~~ 188 (475)
++-|+.
T Consensus 123 ~~aF~~ 128 (157)
T PRK15363 123 IKALKA 128 (157)
T ss_pred HHHHHH
Confidence 666654
No 183
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.08 E-value=1.1 Score=48.81 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=56.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC---HHHHHHHHH--HHH
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRN---LSSWHLMIS--GYA 205 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~---~~tyn~li~--~~~ 205 (475)
|..|-..|+..-+...|.+.|+...+.. ..|....-++.+.|++..+++.|..+.-...+++ ...||-+-. .|.
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 4555555555455555666665555443 3445555566666666666666666532222211 111221111 133
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373 206 ANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m 255 (475)
+.++..+|+.-|+.-.+. .| |...|..+..+|-..|++..|.++|...
T Consensus 574 ea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred CccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 344444444444443332 22 3334445555555555555555555444
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.02 E-value=0.66 Score=37.93 Aligned_cols=83 Identities=7% Similarity=-0.032 Sum_probs=40.9
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhcCC
Q 038373 138 CGNLKSIEMGKRVHELLRTSAFVKD--VELNNKLIEMYGKCCNTRLARKVFDQLRK--RN----LSSWHLMISGYAANGQ 209 (475)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~----~~tyn~li~~~~~~g~ 209 (475)
+-..|+.++|..+|+.....|...+ ...+-.+-..|...|++++|..+|++... |+ ......+--++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 3345666666666666666665433 12233334455555666666666654431 22 1111112224455566
Q ss_pred hHHHHHHHHHH
Q 038373 210 GADGLMLFEQM 220 (475)
Q Consensus 210 ~~~A~~l~~~M 220 (475)
.++|++.+-+.
T Consensus 91 ~~eAl~~~l~~ 101 (120)
T PF12688_consen 91 PKEALEWLLEA 101 (120)
T ss_pred HHHHHHHHHHH
Confidence 66666655443
No 185
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=1.5 Score=36.70 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=25.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
..+|..+.+.+.......+++.+.+.| ..+...+|.||..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 345555555566666666666665555 24555666666666654
No 186
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.90 E-value=3.3 Score=40.84 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccC---CHHH-HH---HHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 168 KLIEMYGKCCNTRLARKVFDQLRKR---NLSS-WH---LMISGYAA---NGQGADGLMLFEQMRKTGPHPDKETFLVVFA 237 (475)
Q Consensus 168 ~Li~~~~k~g~~~~A~~~f~~m~~~---~~~t-yn---~li~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~ 237 (475)
.|+-.|-...+++...++.+.|+.. ++.. -+ -..-++-+ .|+.++|++++..+....-.++.-||..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444688889999999999999854 2221 11 22334455 7899999999999777666778888887776
Q ss_pred HHHc---------cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCC-HH---HHHHHH---HhC----C---CC
Q 038373 238 ACAS---------AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGH-LI---EAEEFV---ERM----P---FE 294 (475)
Q Consensus 238 ~~~~---------~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~-~~---~A~~~~---~~m----~---~~ 294 (475)
.|-. ...+++|...|.+-- .+.||.++--.+...+--.|. .+ +..++- ..+ | -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 223556666655332 344554332222333333443 22 222322 111 1 12
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 295 PTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 295 p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
.|-=-+.+++.++.-.|+.+.|.++.+.+..+.|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3334456788888899999999999999888765543
No 187
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.86 E-value=1 Score=47.91 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=41.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 232 FLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 232 ~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
|-++++..|-.|++++|.++-++-. |....-.|-.+|-..|++.+|..+|.+.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4456666778899999998877543 4455667889999999999999999875
No 188
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=3.4 Score=38.12 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=128.8
Q ss_pred cCChHHHHHHHHhccc------CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH
Q 038373 108 EGKVREAIEYMGQDAS------ASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM-YGKCCNT 179 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~------~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~-~~k~g~~ 179 (475)
..+.++.++++.++.. .|++..+ |--++-+....|+.+.|...++.+...- |...-.-.|=.+ +--.|+.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4567888888876432 4577766 6667777778899999999999987653 433322223222 2335899
Q ss_pred HHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 180 RLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 180 ~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
++|.++++...+ | |.++|--=|...-..|+.-+|++-+.+-.+. +.-|...|--+-..|...|+++.|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999875 3 6777776666777788888999888887765 66799999999999999999999999999998
Q ss_pred hhCCCcCCHHH-HHHHHHHHHhcC---CHHHHHHHHHhC
Q 038373 257 NDYGIVPGIEH-YIAIIKVLGSAG---HLIEAEEFVERM 291 (475)
Q Consensus 257 ~~~g~~p~~~~-y~~li~~~~~~g---~~~~A~~~~~~m 291 (475)
=+.|-... +-.+-+.+--.| +++-|.++|.+-
T Consensus 182 ---l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 182 ---LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred ---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34564333 334444443333 466788888776
No 189
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.67 E-value=0.13 Score=38.19 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc---------CC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK---------RN-LSSWHLMISGYAANGQGADGLMLFEQ 219 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~---------~~-~~tyn~li~~~~~~g~~~~A~~l~~~ 219 (475)
+|+.+-..|.+.|++++|...|++..+ ++ ..+|+.|-..|...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444455555544444443321 11 22444444444445555555444443
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.59 E-value=0.12 Score=36.92 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=35.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 201 ISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
...+.+.|++++|.+.|++..+.. | +...+..+-..+...|++++|..+|+...
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667777777777777777654 4 34456666666777777777777777765
No 191
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.57 E-value=0.46 Score=44.59 Aligned_cols=94 Identities=12% Similarity=0.025 Sum_probs=64.6
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHH
Q 038373 138 CGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGL 214 (475)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~ 214 (475)
..+.+++++|...|.+.++.. .-|.+-|.-=-.+|++.|..+.|.+=-+.-..- -..+|..|-.+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 355677778888887777654 445666666677788888777777665544432 2347777777888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHH
Q 038373 215 MLFEQMRKTGPHPDKETFLV 234 (475)
Q Consensus 215 ~l~~~M~~~g~~pd~~t~~~ 234 (475)
+-|++-++ +.|+..+|-.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHhhhc--cCCCcHHHHH
Confidence 87777665 6777766644
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.54 E-value=0.83 Score=47.19 Aligned_cols=218 Identities=13% Similarity=0.108 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHH---------HhcccCCCCHHHHHHHHHHHhccCCHHHHH--HHHHHHHHcCCCC
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYM---------GQDASASAGYDVFSSLLDSCGNLKSIEMGK--RVHELLRTSAFVK 161 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~---------~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~~~~m~~~g~~p 161 (475)
+-.+.+.+-+-.|..+|.+++|.++- +.......+...|++.=++|.+.+++..-. .-+++|+++|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 44455556666788889998887752 111111155666888888888887765433 3345777788778
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH-------------hcccCC--------------------HHHH--H-----HHH
Q 038373 162 DVELNNKLIEMYGKCCNTRLARKVFD-------------QLRKRN--------------------LSSW--H-----LMI 201 (475)
Q Consensus 162 ~~~~~~~Li~~~~k~g~~~~A~~~f~-------------~m~~~~--------------------~~ty--n-----~li 201 (475)
+...... .++-.|++.+|-++|. .|+--| -..| + +-.
T Consensus 634 ~~iLlA~---~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAA 710 (1081)
T KOG1538|consen 634 NDLLLAD---VFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAA 710 (1081)
T ss_pred hHHHHHH---HHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHH
Confidence 7654332 2333344444444444 332100 0011 1 111
Q ss_pred HHHHhcCChHHHHHHHHH-----HH-HcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHH
Q 038373 202 SGYAANGQGADGLMLFEQ-----MR-KTGPHP---DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAII 272 (475)
Q Consensus 202 ~~~~~~g~~~~A~~l~~~-----M~-~~g~~p---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li 272 (475)
..+...|+.++|..+.-+ |. +-+-+. +..+.-.+-.-+-+...+..|.++|..|-. ...++
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiV 780 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLV 780 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHh
Confidence 223334555555444321 11 111111 223343444444455556666677766642 25788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCHHH-----------HHHHHHHHHHcCCchHHHHHHHHH
Q 038373 273 KVLGSAGHLIEAEEFVERM-PFEPTVEV-----------WEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m-~~~p~~~t-----------~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
++....|++.+|..+-++. ...||+.. |.---.+|.+.|+..+|.++++.+
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 9999999999999999998 45566532 222335788888885555555544
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.50 E-value=0.18 Score=42.81 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRT-----SAFVKDVEL 165 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 165 (475)
...++..+...|++++|+.+.+...... -|...|-.+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666777777777776655433 3455677777777777777777777766643 377776554
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.38 E-value=3.3 Score=36.36 Aligned_cols=122 Identities=17% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHH
Q 038373 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLRK----RNLSSWHLMISGYAANGQGADGLMLFEQMRKT---GPHPDKETF 232 (475)
Q Consensus 160 ~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~---g~~pd~~t~ 232 (475)
.|++.---.|-++..+.|+..+|...|++-.. .|....-.+-.+....+++.+|...++.+-+. +-.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 45555555556666666666666666665432 24444444555555566666666666655543 223332 2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Q 038373 233 LVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEE 286 (475)
Q Consensus 233 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~ 286 (475)
..+-..+...|+..+|+.-|+... ..-|+...-.-.-.++.+.|+.++|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 333455556666666666666665 223333222222234566666655543
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.24 E-value=0.99 Score=44.77 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK-----RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF-LVVF 236 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~-~~li 236 (475)
..+|..+|+.--|..-++.|+.+|-+..+ +++..|+++|.-+|. |+..-|..+|+-=.. --||.-.| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 45677777777777777777777776653 466677777776664 556667777754222 13444444 3455
Q ss_pred HHHHccCCHHHHHHHHHHHhhhCCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 038373 237 AACASAEAVKEGFLYFEIMKNDYGIVPG--IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQ 308 (475)
Q Consensus 237 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~ 308 (475)
.-+...++-+.|..+|+.-.. .+.-+ ...|..+|+-=.+-|++..|..+=++| ..-|...+-....+-|.
T Consensus 474 ~fLi~inde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 566677777888888875442 22223 457888888888888888777766666 22344444444444444
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.94 E-value=0.92 Score=42.74 Aligned_cols=94 Identities=13% Similarity=0.228 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK----ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIA 270 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~ 270 (475)
.|+..+.-+.+.|++++|...|+.+... .|+. ..+-.+-..+...|++++|...|..+.+++.-.|. ...+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4555554445567777777777776653 2332 24445556666677777777777776643222111 112223
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 038373 271 IIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~m 291 (475)
+...|.+.|+.++|.++|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 344455667777777666655
No 197
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=93.87 E-value=4.6 Score=42.83 Aligned_cols=164 Identities=15% Similarity=0.240 Sum_probs=96.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 157 SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL 233 (475)
Q Consensus 157 ~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 233 (475)
..+.-|..+|-.|.-+..++|+++.+-+.|++... .-...|+.+-..|...|.-..|+.++++-....-.|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34556777888888888888888888888876542 233467777778888888778888777654433235443333
Q ss_pred HHHHHHH--ccCCHHHHHHHHHHHh--------------------------------------------------hhCCC
Q 038373 234 VVFAACA--SAEAVKEGFLYFEIMK--------------------------------------------------NDYGI 261 (475)
Q Consensus 234 ~li~~~~--~~g~~~~a~~~~~~m~--------------------------------------------------~~~g~ 261 (475)
.++...| +.+.++++.++-.... +.-+-
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3332222 2344444444333332 22234
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373 262 VPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELEDRAEEL 322 (475)
Q Consensus 262 ~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 322 (475)
.|++..|-++= |+-.++++.|.+...+. +-.-+...|.-|.-.+.-.+++..|+.+.+.
T Consensus 477 dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 477 DPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred CchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 45555554443 55666777777766655 2234667777766666666676666555443
No 198
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.85 E-value=6.8 Score=39.16 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHH-H
Q 038373 192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHY-I 269 (475)
Q Consensus 192 ~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y-~ 269 (475)
+=...|...|+.-.+..-.+.|..+|-+..+.| +.+++..|+++|.-+|. |+..-|..+|+-=... -||...| +
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHH
Confidence 345688899998888887999999999999999 78899999999998875 7778889998764323 2454444 5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 270 AIIKVLGSAGHLIEAEEFVERM--PFEPT--VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
..++-+.+-++-+.|..+|+.- .+..+ ...|..+|..-.+.|++..+....+.+.+.-|...
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen 536 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN 536 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence 6778889999999999999955 22333 67899999999999999888777788888777664
No 199
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.73 E-value=2 Score=46.80 Aligned_cols=172 Identities=11% Similarity=0.054 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038373 144 IEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQ 219 (475)
Q Consensus 144 ~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~ 219 (475)
...+...|-...+. .++ ...|..|-..|+..-+...|.+.|+..-+ .|...|-.+...|++...+++|+.+.-.
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44444444444333 222 45788899999988899999999987654 4677899999999999999999998322
Q ss_pred HHHcCCCC-CHHHHHHHHH--HHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038373 220 MRKTGPHP-DKETFLVVFA--ACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE 294 (475)
Q Consensus 220 M~~~g~~p-d~~t~~~li~--~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~ 294 (475)
--+ ..| -...+|-+-. .+-+.++...+..-|+... ...| |...|..|..+|.++|+..-|.++|.+. -++
T Consensus 552 ~~q--ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 552 AAQ--KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred Hhh--hchHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 211 111 1122232222 3456677777777777665 4556 7888999999999999999999999988 445
Q ss_pred CCHHHHHHH-HH-HHHHcCCchHHHHHHHHH
Q 038373 295 PTVEVWEAL-RN-FAQIHGDVELEDRAEELL 323 (475)
Q Consensus 295 p~~~t~~~l-i~-~~~~~g~~~~a~~~~~~l 323 (475)
|+. +|... +. .-|..|..+++..+.+++
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 543 22222 11 234567776665555444
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.62 E-value=0.2 Score=37.19 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMRKT--GPH---PD-KETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~~---pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.+|+.+-..|...|++++|+..|++..+- -.. |+ ..+++.+-..+...|+.++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888876542 111 22 3466666677777777777777776544
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.52 E-value=6.4 Score=36.62 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=24.0
Q ss_pred HHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 273 KVLGSAGHLIEAEEFVERM-----PFEPTVEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m-----~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
.-|-+.|...-|..=|+.+ +........-.|+.+|...|..++|..+...+
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455555555444444444 11122233344455565566665555555444
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=2 Score=39.71 Aligned_cols=139 Identities=12% Similarity=-0.012 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE---- 171 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~---- 171 (475)
.+.++..+--.|.+.-.+.++++..... -++.-...|.+.-.+.|+.+.|...|+...+..-+.|-.+++.++.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3566666666677777777777655433 3445567777777888999999999998876544566666666654
Q ss_pred -HHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 172 -MYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAA 238 (475)
Q Consensus 172 -~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~ 238 (475)
.|.-..++.+|.+.|+++... |.+.-|.=.-+..-.|+..+|++.+..|+.. .|...+-++++--
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~n 328 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFN 328 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHH
Confidence 344567888999999887753 5666665444555578899999999999874 5665555554433
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.42 E-value=0.34 Score=34.85 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccC-CHHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLK-SIEMGKRVHELLRT 156 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~m~~ 156 (475)
...|..+-..+.+.|++++|+..|.+.....|+. ..|..+-.++.+.| ++++|.+.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555556666666666666666544433433 23455555555555 46666665555443
No 204
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.37 E-value=0.4 Score=34.49 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANG-QGADGLMLFEQMRK 222 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g-~~~~A~~l~~~M~~ 222 (475)
..+|..+-..|.+.|++++|...|++..+ | +...|..+-.+|.+.| ++++|++.|++-.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566666677777777777777766542 3 4456777777777777 57777777766543
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.34 E-value=0.81 Score=45.81 Aligned_cols=64 Identities=14% Similarity=-0.024 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KRNL----SSWHLMISGYAANGQGADGLMLFEQMRKT 223 (475)
Q Consensus 160 ~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~~~----~tyn~li~~~~~~g~~~~A~~l~~~M~~~ 223 (475)
..+...++.+-.+|.+.|++++|...|++-. +||- .+|..+-.+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999854 4553 46999999999999999999999998875
No 206
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.32 E-value=4.2 Score=33.96 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373 167 NKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE 243 (475)
Q Consensus 167 ~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g 243 (475)
..+|..+.+.+.......+++.+... +...+|.+|..|++.. ..+.++.++. ..+.+....+++.|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45566666666677777777665432 3446777777777653 3334444432 233444455667777777
Q ss_pred CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038373 244 AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA-GHLIEAEEFVERMPFEPTVEVWEALRNFAQ 308 (475)
Q Consensus 244 ~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~t~~~li~~~~ 308 (475)
.++++..++..+. . |...++.+.+. ++++.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 7777777776553 1 22333334444 6777777777763 25566776666554
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.01 E-value=1.2 Score=42.08 Aligned_cols=94 Identities=11% Similarity=-0.026 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTSA--FVKDVELNNKL 169 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~L 169 (475)
..|+..+.-+.+.|++++|...|+.....-|+. ..+-.+-.++...|++++|...|..+.+.- -......+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 345555554566788888888887766544543 244455556666677777777666665431 00111222223
Q ss_pred HHHHHHcCCHHHHHHHHHhc
Q 038373 170 IEMYGKCCNTRLARKVFDQL 189 (475)
Q Consensus 170 i~~~~k~g~~~~A~~~f~~m 189 (475)
...|.+.|+.++|.++|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33444555555555555544
No 208
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.82 E-value=6.3 Score=37.84 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cC----CHHHHHHHHHHHhhhCCC--cCCHHHHHHHHHH
Q 038373 210 GADGLMLFEQMRKTGPHPDKETFLVVFAACAS--AE----AVKEGFLYFEIMKNDYGI--VPGIEHYIAIIKV 274 (475)
Q Consensus 210 ~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~--~g----~~~~a~~~~~~m~~~~g~--~p~~~~y~~li~~ 274 (475)
+++.+.+++.|.+.|++-+..+|.+..-.... .. .+.+|..+|+.|++++.+ .++...+.+|+.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 45667888999999999998888763333222 22 256788999999977665 3455667777654
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.81 E-value=6.1 Score=40.71 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=89.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc-CCCC-----CHHHHHHHHHHHHH----cCCHHHHHHHHHhccc--CCHHHHHHHH
Q 038373 134 LLDSCGNLKSIEMGKRVHELLRTS-AFVK-----DVELNNKLIEMYGK----CCNTRLARKVFDQLRK--RNLSSWHLMI 201 (475)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~m~~~-g~~p-----~~~~~~~Li~~~~k----~g~~~~A~~~f~~m~~--~~~~tyn~li 201 (475)
++...+=.||-+.+.+.+.+-.+. |+.- -..+|+..+..++- ...++.|.++++.+.+ |+-.-|.-.-
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~ 273 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFE 273 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 344444446666666666555442 2221 12345555554443 3467777777777765 6655554333
Q ss_pred H-HHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh
Q 038373 202 S-GYAANGQGADGLMLFEQMRKTG---PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS 277 (475)
Q Consensus 202 ~-~~~~~g~~~~A~~l~~~M~~~g---~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~ 277 (475)
. -+...|++++|++.|++..... -+.....|=-+...+.-.++|++|.+.|..+.+...+.+..++|-.- -.|..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a-~c~~~ 352 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA-ACLLM 352 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH-HHHHh
Confidence 2 2445677788887777654311 11123344455556677778888888888887655554444444322 23455
Q ss_pred cCCH-------HHHHHHHHhC
Q 038373 278 AGHL-------IEAEEFVERM 291 (475)
Q Consensus 278 ~g~~-------~~A~~~~~~m 291 (475)
.|+. ++|.++|.+.
T Consensus 353 l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred hccchhhhhhHHHHHHHHHHH
Confidence 6666 7888888877
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.51 E-value=0.81 Score=33.24 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=21.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 204 YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 204 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
|.+.+++++|+++++.+...+.. +...+...-..+.+.|++++|.+.++...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444442111 22233333344444444444444444444
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.32 E-value=5.4 Score=41.10 Aligned_cols=164 Identities=16% Similarity=0.136 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCH---------HHHHHHHHHHHhc----CC
Q 038373 144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-RNL---------SSWHLMISGYAAN----GQ 209 (475)
Q Consensus 144 ~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-~~~---------~tyn~li~~~~~~----g~ 209 (475)
+.-+.-+|..+... ++| ....++...+=.|+-+.+.+++.+-.+ .|+ ..|+.++..++.. ..
T Consensus 173 v~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 44556667776654 233 456788888888999999988876543 222 3788888887765 45
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHhh-hCCCc-CCHHHHHHHHHHHHhcCCHHHHHH
Q 038373 210 GADGLMLFEQMRKTGPHPDKETFLVVF-AACASAEAVKEGFLYFEIMKN-DYGIV-PGIEHYIAIIKVLGSAGHLIEAEE 286 (475)
Q Consensus 210 ~~~A~~l~~~M~~~g~~pd~~t~~~li-~~~~~~g~~~~a~~~~~~m~~-~~g~~-p~~~~y~~li~~~~~~g~~~~A~~ 286 (475)
.+.|.++++++... -|+..-|...- +.+...|++++|.+.|+.... +.... .....|--+.-.+.-.+++++|.+
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 68899999999874 68888776544 345678999999999996542 11211 123344455566888999999999
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHH-HHcCCc
Q 038373 287 FVERM-P-FEPTVEVWEALRNFA-QIHGDV 313 (475)
Q Consensus 287 ~~~~m-~-~~p~~~t~~~li~~~-~~~g~~ 313 (475)
.|.++ . -.....+|.-+..+| ...|+.
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999 2 234455555555433 335666
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.27 E-value=0.75 Score=33.40 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=38.7
Q ss_pred HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373 171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT 223 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~ 223 (475)
..|.+.+++++|.++++.+.+ | +...|...-..|.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 457777788888888777653 3 5556777777788888888888888877764
No 213
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=2.1 Score=40.37 Aligned_cols=110 Identities=15% Similarity=0.229 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHH
Q 038373 193 NLSSWHLMISGYAANGQGADGLMLFEQMRK-TGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYI 269 (475)
Q Consensus 193 ~~~tyn~li~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~ 269 (475)
|...|--|-..|...|+++.|..-|..-.+ .|-.|+.. -|...+-.-....+-.++.++|+++. ..+|+ +..-.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al---~~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL---ALDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH---hcCCccHHHHH
Confidence 677888888889999999888888887765 34334333 22222322233344567888888887 34553 44455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038373 270 AIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRN 305 (475)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~ 305 (475)
-|--.+...|++.+|...|+.| ..-|....|..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 5566788888888888888888 44566666666664
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.79 E-value=18 Score=38.58 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHH
Q 038373 197 WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLG 276 (475)
Q Consensus 197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~ 276 (475)
-+--|.-+..-|+..+|.++-.+.+ -||..-|--=+.+++..+++++-+++-+.++. ..-|--.+..+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEACL 755 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHHH
Confidence 3444555666777777777776653 57888888888899999999887777766652 344667788899
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHH
Q 038373 277 SAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELE 316 (475)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a 316 (475)
+.|+.+||.+++.+.+-.+ -...+|.+.|++.+|
T Consensus 756 ~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eA 789 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEA 789 (829)
T ss_pred hcccHHHHhhhhhccCChH------HHHHHHHHhccHHHH
Confidence 9999999999999884222 456778888888544
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.62 E-value=15 Score=36.21 Aligned_cols=215 Identities=16% Similarity=0.084 Sum_probs=111.4
Q ss_pred HcCChHHHHHHHHhcccCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373 107 KEGKVREAIEYMGQDASASAGYDVF----SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 107 ~~g~~~~A~~l~~~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A 182 (475)
-.|++++|.+-|+.|.. |+.|- -.|.-.--+.|+-+.|.+.-+..-+.- .-=.....+++...|..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 35777777777777765 33332 222222234566666666655543322 11234566777777777777777
Q ss_pred HHHHHhcc-----cCCHH--HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHH
Q 038373 183 RKVFDQLR-----KRNLS--SWHLMISGYAA---NGQGADGLMLFEQMRKTGPHPDKET-FLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 183 ~~~f~~m~-----~~~~~--tyn~li~~~~~---~g~~~~A~~l~~~M~~~g~~pd~~t-~~~li~~~~~~g~~~~a~~~ 251 (475)
.++.+.-+ ++|+. .--.|+.+-+. .-+...|...-.+ ...+.||-+- -..--.++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE--ANKLAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCccchHHHHHHHHHHhccchhhhhhH
Confidence 77777544 33433 22233332221 1223333332222 2235555442 22334567777888888888
Q ss_pred HHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHH--HH--HHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373 252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIE--AE--EFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD 327 (475)
Q Consensus 252 ~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~--A~--~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~ 327 (475)
++.+. +..--|+. .++..+.+.|+--. .. +-+..|. ..|..+--++..+....|++..|....+....+.
T Consensus 286 lE~aW-K~ePHP~i----a~lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 286 LETAW-KAEPHPDI----ALLYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHH-hcCCChHH----HHHHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 87777 32333442 23333556665321 11 1233343 2344555555566666777776666666666666
Q ss_pred CCChhh
Q 038373 328 PSKAIV 333 (475)
Q Consensus 328 ~~~~~~ 333 (475)
|....+
T Consensus 360 pres~~ 365 (531)
T COG3898 360 PRESAY 365 (531)
T ss_pred chhhHH
Confidence 665544
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.15 E-value=17 Score=35.89 Aligned_cols=227 Identities=16% Similarity=0.118 Sum_probs=133.8
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHhccc-CCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHH
Q 038373 98 LDVNLLSLC--KEGKVREAIEYMGQDAS-ASAGYDVFSSLLDSCG--NLKSIEMGKRVHELLRTSAFVKDVEL--NNKLI 170 (475)
Q Consensus 98 ~n~li~~~~--~~g~~~~A~~l~~~~~~-~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~Li 170 (475)
|.+|-.++. -.|+-..|.++-.+..+ ..-|......||.+-. -.|+.+.|.+-|+.|... |.... .-.|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 344444433 35566677666554321 2245555656666543 348889999999888642 22211 12222
Q ss_pred HHHHHcCCHHHHHHHHHhccc--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHH--HHHHHHHHHc---
Q 038373 171 EMYGKCCNTRLARKVFDQLRK--RNL-SSWHLMISGYAANGQGADGLMLFEQMRKT-GPHPDKET--FLVVFAACAS--- 241 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~--~~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~t--~~~li~~~~~--- 241 (475)
-.--+.|..+.|.+.-+.--+ |.. -.|.+.+...|..|+++.|++|++.-+.. -+.+|+.- =..|+.+-..
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 223356778888777765543 322 37889999999999999999999887653 45666542 2233333211
Q ss_pred cCCHHHHHHHHHHHhhhCCCcCCHHHH-HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHH-HH
Q 038373 242 AEAVKEGFLYFEIMKNDYGIVPGIEHY-IAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELE-DR 318 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~~~~g~~p~~~~y-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a-~~ 318 (475)
..+-..|...-.+-. .+.||.+-- -.--.+|.+.|++.++-.+++.+ ..+|....|..-+ +.+.|+.-.. .+
T Consensus 242 dadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRlk 316 (531)
T COG3898 242 DADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRLK 316 (531)
T ss_pred cCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHHH
Confidence 122334444333322 456664322 23346799999999999999999 5567776665443 4566765321 12
Q ss_pred HHHHHhccCCCChh
Q 038373 319 AEELLGDLDPSKAI 332 (475)
Q Consensus 319 ~~~~l~~~~~~~~~ 332 (475)
-.+.|..|++++..
T Consensus 317 Ra~~L~slk~nnae 330 (531)
T COG3898 317 RAKKLESLKPNNAE 330 (531)
T ss_pred HHHHHHhcCccchH
Confidence 24556778877653
No 217
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.07 E-value=4.9 Score=40.97 Aligned_cols=158 Identities=11% Similarity=0.031 Sum_probs=106.7
Q ss_pred HHHcCChHHHHHHHHh--cccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373 105 LCKEGKVREAIEYMGQ--DASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 105 ~~~~g~~~~A~~l~~~--~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A 182 (475)
..-.|+++++.++... ....-| ..-.+.++..+-+.|..+.|.++-..-. .-.+...++|+++.|
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 4457889998877762 221113 4558889999999999999998865432 234567789999999
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373 183 RKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV 262 (475)
Q Consensus 183 ~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 262 (475)
.++-++.. +...|..|-....+.|+++-|.+.|++.. -|..|+--|.-.|+.+.-.++.+....+ |-
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~-~~- 404 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER-GD- 404 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T--
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc-cC-
Confidence 99876665 66799999999999999999999998754 2555666677778887777777665533 32
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038373 263 PGIEHYIAIIKVLGSAGHLIEAEEFVERMPF 293 (475)
Q Consensus 263 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 293 (475)
+|.-..++.-.|++++..+++.+-|.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 56666667778899988888887753
No 218
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.83 E-value=2.4 Score=40.05 Aligned_cols=76 Identities=17% Similarity=0.282 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRK-----TGPHPDKETFLV 234 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t~~~ 234 (475)
..++..++..+..+|+.+.+...+++.-.. |...|-.||.+|.++|+...|+..|+++.. -|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456778888888899999988888877643 667899999999999999999998888765 477777776666
Q ss_pred HHHH
Q 038373 235 VFAA 238 (475)
Q Consensus 235 li~~ 238 (475)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 219
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=90.72 E-value=17 Score=35.21 Aligned_cols=192 Identities=10% Similarity=0.081 Sum_probs=127.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHH---HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHH
Q 038373 100 VNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLD---SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL-IEMYGK 175 (475)
Q Consensus 100 ~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L-i~~~~k 175 (475)
.+=..+..+|++.+|+.-|.......| ..|-++.+ .|...|+-..|..=+...++. +||-..-..- -..+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 344456677888888888888777334 44544443 344455555565555555543 5664322211 235778
Q ss_pred cCCHHHHHHHHHhcccCCH----------------HHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038373 176 CCNTRLARKVFDQLRKRNL----------------SSWH--LMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVF 236 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~----------------~tyn--~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li 236 (475)
.|.++.|..=|+...+.+. ..|+ ..+..+.-.|+...|++....+.+ +.| |...|-.--
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARA 196 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHH
Confidence 9999999999998864221 1232 345566778999999999988887 455 666677778
Q ss_pred HHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 038373 237 AACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEV 299 (475)
Q Consensus 237 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t 299 (475)
.+|...|+...|..=++... +..-. ++.+.--+-..|-..|+.+.++...++- .+.||-..
T Consensus 197 kc~i~~~e~k~AI~Dlk~as-kLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQAS-KLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHH-hcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 88999999998877666555 22222 4555556667788899999998887776 67777543
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.52 E-value=8.9 Score=31.74 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373 197 WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV 262 (475)
Q Consensus 197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 262 (475)
.+.-+..+...|+-+.-.++.+++.. .-+++......+-.||.+.|+..++.+++.+.-++ |+.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 34455666777777777777777654 23566666777777777778777777777777643 653
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=4.3 Score=38.30 Aligned_cols=96 Identities=15% Similarity=-0.007 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--C-CHHHHHHHHHhccc--C-CHHHHHHH
Q 038373 127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC--C-NTRLARKVFDQLRK--R-NLSSWHLM 200 (475)
Q Consensus 127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~--g-~~~~A~~~f~~m~~--~-~~~tyn~l 200 (475)
|...|-.|-..|...|+++.|..-|....+.- .++...+..+-.++... + .-.++..+|+++.. | |+.+-.-|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 34445555555555555555555555554432 23333333333332221 1 23455566665543 2 44455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 038373 201 ISGYAANGQGADGLMLFEQMRKT 223 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~~ 223 (475)
-.++...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 55666667777777777666653
No 222
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=24 Score=36.15 Aligned_cols=220 Identities=11% Similarity=-0.029 Sum_probs=114.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVF-SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL------- 169 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L------- 169 (475)
.-.+-++.-+..+++.|++-+....... ...+| +..-.++...|...++...-....+.|.+ ...-|+-|
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 3445556666777777877777655544 44444 44445677888887777777766666532 22223322
Q ss_pred HHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHH
Q 038373 170 IEMYGKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET-FLVVFAACASAEAVK 246 (475)
Q Consensus 170 i~~~~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-~~~li~~~~~~g~~~ 246 (475)
-++|.+.++.+.|...|.+... ++.. + ..+....++++.......- +.|+... .-.=-+.+.+.|++.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~----~---ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPD----L---LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHH----H---HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHH
Confidence 2255566677777777766431 1100 1 1112223333333332222 2232211 111134566778888
Q ss_pred HHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHh
Q 038373 247 EGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVE-VWEALRNFAQIHGDVELEDRAEELLG 324 (475)
Q Consensus 247 ~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~l~ 324 (475)
.|...+.+++.+ . .-|...|..---+|.+.|.+.+|.+=-+.- ...|+.. .|--=-.++.-..+++.|.++++.-.
T Consensus 376 ~Av~~YteAIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887733 2 225777888888888888887777654443 2233321 11111111222234445555555555
Q ss_pred ccCCCC
Q 038373 325 DLDPSK 330 (475)
Q Consensus 325 ~~~~~~ 330 (475)
+..|+.
T Consensus 454 e~dp~~ 459 (539)
T KOG0548|consen 454 ELDPSN 459 (539)
T ss_pred hcCchh
Confidence 555443
No 223
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.16 E-value=7.2 Score=39.02 Aligned_cols=134 Identities=10% Similarity=0.042 Sum_probs=88.9
Q ss_pred HHHcCChHHHHHHHHhcccCC---CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc
Q 038373 105 LCKEGKVREAIEYMGQDASAS---AG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 105 ~~~~g~~~~A~~l~~~~~~~~---p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~Li~~~~k~ 176 (475)
+-+.+++.+|.++|.+..... |. .+.-+-+|+||.. .+++.....+.+..+. |-.+-...+-+|+ .-+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHh
Confidence 447889999999998654322 22 2234677788765 4677777777766553 4333333333332 3467
Q ss_pred CCHHHHHHHHHhcccC------------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHH
Q 038373 177 CNTRLARKVFDQLRKR------------------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGP----HPDKETFLV 234 (475)
Q Consensus 177 g~~~~A~~~f~~m~~~------------------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~----~pd~~t~~~ 234 (475)
+..++|.+.|..-.+. |.+-=+..+.++...|++.++..++++|...=+ .-|.-+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998887654321 223446778888999999999999999887543 378889988
Q ss_pred HHHHHHc
Q 038373 235 VFAACAS 241 (475)
Q Consensus 235 li~~~~~ 241 (475)
++-.+++
T Consensus 173 ~vlmlsr 179 (549)
T PF07079_consen 173 AVLMLSR 179 (549)
T ss_pred HHHHHhH
Confidence 7766654
No 224
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.06 E-value=19 Score=33.43 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=42.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 235 VFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+..-|-+.|.+..|..-++.+.+++.-.| .....-.|+.+|-+.|..++|.++...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34557788999999999999886654433 2345567889999999999998877654
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.58 E-value=16 Score=31.84 Aligned_cols=217 Identities=18% Similarity=0.086 Sum_probs=149.0
Q ss_pred cCChHHHHHHHHhcccCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 038373 108 EGKVREAIEYMGQDASASAG---YDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVKDVELNNKLIEMYGKCCNTRLAR 183 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~Li~~~~k~g~~~~A~ 183 (475)
.+....+...+.......+. ...+......+...+.+..+...+...... ........+..+...+...+....+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666554443343 567778888888889999888888887653 33456667777778888888899999
Q ss_pred HHHHhccc--C-CHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373 184 KVFDQLRK--R-NLSSWHLMIS-GYAANGQGADGLMLFEQMRKTGPHP----DKETFLVVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 184 ~~f~~m~~--~-~~~tyn~li~-~~~~~g~~~~A~~l~~~M~~~g~~p----d~~t~~~li~~~~~~g~~~~a~~~~~~m 255 (475)
+.+..... + +...+..... .+...|++++|...|.+... ..| ....+......+...++.+++...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99987764 2 2223333334 78899999999999999855 333 3444555555577888999999999988
Q ss_pred hhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373 256 KNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEALRNFAQIHGDVELEDRAEELLGDLDP 328 (475)
Q Consensus 256 ~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~ 328 (475)
.. .... ....+..+-..+...|+.++|...+... ...|+ ...+..+...+...|..+.+....+...+..+
T Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 194 LK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred Hh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 73 2223 3677888888899999999999999888 44454 33444444444466667666655555554433
No 226
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.35 E-value=4.2 Score=38.68 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=72.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038373 157 SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-RNLS-----SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE 230 (475)
Q Consensus 157 ~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-~~~~-----tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 230 (475)
.|....+.+...++..-....+++++...+-..+. |+.. +-.+.|. ++..=++++++.++..=.+.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 35555666667777766667788888877766652 2211 1112222 233446789999999889999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 038373 231 TFLVVFAACASAEAVKEGFLYFEIMKND 258 (475)
Q Consensus 231 t~~~li~~~~~~g~~~~a~~~~~~m~~~ 258 (475)
|++.+|+.+.+.+++.+|..+.-+|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998887776644
No 227
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=88.09 E-value=41 Score=36.08 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIK 273 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~ 273 (475)
.|......+.+.+..++|...+.|... +.| ....|.-.-..+-..|.+++|.+.|.... -+.|| +...++|-.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 355556667777777777766666543 333 22334433344556788888888887765 56775 667789999
Q ss_pred HHHhcCCHHHHHH--HHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 274 VLGSAGHLIEAEE--FVERM-PFE-PTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 274 ~~~~~g~~~~A~~--~~~~m-~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
+|.+.|+-.-|.+ ++.++ .+. -+...|-.|-..+.+.|+.+.|-+.++.-.++++..
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 9999998877777 88877 333 467889999899999999988887777776666544
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.62 E-value=14 Score=37.79 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
--.+.++.-+-+.|..+.|+++-.+ +.+ =.....+.|+++.|.++-.+. .+...|..|-+...+
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D-------~~~---rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD-------PDH---RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS--------HHH---HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC-------hHH---HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 3478889999999999999988543 222 123345679999998876543 477899999999999
Q ss_pred cCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373 176 CCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI 254 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 254 (475)
.|+++-|++.|.+... |..|.--|.-.|+.++-.++-+.-...|- +|....++--.|++++..+++..
T Consensus 360 ~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999998753 66777778888988777777766665552 45555566666777777766653
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.48 E-value=1.3 Score=27.26 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQM 220 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M 220 (475)
+|+.|-..|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666677777777777776663
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.42 E-value=9.8 Score=39.76 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHH--------
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEH-------- 267 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~-------- 267 (475)
+.-.+-.-+-+...+.-|-++|..|-.. ..++......++|.+|..+-+..- .+.||++.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP---e~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP---EFKDDVYMPYAQWLAE 816 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc---cccccccchHHHHhhh
Confidence 4333333344555667788888877432 356677788999999998887665 45566532
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 268 ---YIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 268 ---y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
|---=.+|-|+|+-.||.++++++
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 223335788888888888888887
No 231
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.95 E-value=7.3 Score=34.27 Aligned_cols=94 Identities=15% Similarity=0.087 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhC--CCcCC----HHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE--TFLVVFAACASAEAVKEGFLYFEIMKNDY--GIVPG----IEH 267 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~~--g~~p~----~~~ 267 (475)
.|..+..-|++.|+.++|++.|.++.+....+... .+-.+|..+...+++..+.........-. |-.++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44444445555555555555555554443333322 33444444445555555444443332110 11111 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 268 YIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 268 y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
|..|. +...|++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 44444 23357788888777766
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.68 E-value=20 Score=31.08 Aligned_cols=199 Identities=18% Similarity=0.112 Sum_probs=140.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhccc---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDAS---ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
....+......+...+.+..+...+..... .......+..........+....+...+.........+ ........
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 356677788889999999999998876543 22444556677777777788999999999888765433 12222223
Q ss_pred H-HHHHcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373 171 E-MYGKCCNTRLARKVFDQLRKR------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE 243 (475)
Q Consensus 171 ~-~~~k~g~~~~A~~~f~~m~~~------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g 243 (475)
. .|...|+++.|...|++...- ....+......+...++.++|...+.+............+..+-..+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 3 789999999999999987432 223444444557788999999999999887432214677888888888899
Q ss_pred CHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373 244 AVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT 296 (475)
Q Consensus 244 ~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 296 (475)
+++.+...+..... ..|+ ...+..+...+...|..+++...+.+. ...|+
T Consensus 217 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999998873 3343 334444444455778899999888877 33344
No 233
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.68 E-value=13 Score=31.94 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=28.2
Q ss_pred HcCCHHHHHHHHHhcc--cCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373 175 KCCNTRLARKVFDQLR--KRNL---SSWHLMISGYAANGQGADGLMLFEQMRKT 223 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~--~~~~---~tyn~li~~~~~~g~~~~A~~l~~~M~~~ 223 (475)
+.++.+++..+++.|. .|.. .++-..+ +...|++.+|+++|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 4566777777777665 3432 2444333 45667777777777776554
No 234
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.61 E-value=12 Score=32.99 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHH
Q 038373 164 ELNNKLIEMYGKCCNTRLARKVFDQLRKRN------LSSWHLMISGYAANGQGADGLMLFEQMRK---TGPHPDKETFLV 234 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~------~~tyn~li~~~~~~g~~~~A~~l~~~M~~---~g~~pd~~t~~~ 234 (475)
..+..+.+.|++.|++++|.+.|.++.+.. +..+-.+|......|++..+.....+... .|-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 467788889999999999999999988642 23667788888888898888887776654 222222222222
Q ss_pred HHHHH--HccCCHHHHHHHHHHHhh
Q 038373 235 VFAAC--ASAEAVKEGFLYFEIMKN 257 (475)
Q Consensus 235 li~~~--~~~g~~~~a~~~~~~m~~ 257 (475)
+..|+ ...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 22222 246788888888776653
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.15 E-value=29 Score=32.25 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 270 AIIKVLGSAGHLIEAEEFVERM--PFEPT---VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m--~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
.+-.-|.+.|....|..-|++| ..+-. ....-.|..+|...|..++|+++.+.+..-.|+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 3446688889988888888888 21112 2344556789999999999999999998766655
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.60 E-value=10 Score=35.32 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPH--PDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EHYIAII 272 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~--pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~y~~li 272 (475)
.|+.-+.. .+.|++.+|...|...++.... -..-.+--|-.++...|++++|..+|..+.++++-.|-. ..+--|-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46666654 3456677777777777764311 011233346677777777777777777777655544432 4455666
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 038373 273 KVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m 291 (475)
....+.|+.++|..+|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6677777777777777766
No 237
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.45 E-value=6.8 Score=30.72 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHH
Q 038373 212 DGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK 273 (475)
Q Consensus 212 ~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~ 273 (475)
+..+-++.+-...+.|+.....+.+.||.+..++..|.++|+.++.+.|-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 445555666667789999999999999999999999999999998765543 337887774
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.41 E-value=8.6 Score=40.83 Aligned_cols=110 Identities=13% Similarity=0.154 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
+.+--|.-+..-|+..+|.++-.+.+-||-.-|--=+.+++..+++++-+++-+.++. .+-|.-.+.+|.+.|+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGN 759 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhccc
Confidence 4444455566789999999999999999999999999999999999988877776642 4556667889999999
Q ss_pred HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 245 VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
.++|.+++.... |. .-.+.+|.++|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 999999887654 22 2578899999999999876543
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.32 E-value=7.6 Score=32.64 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=22.1
Q ss_pred cCCHHHHHHHHHhcccC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 176 CCNTRLARKVFDQLRKR------NLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~~------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.|++++|.+.|+.+..+ ..-.---|+.+|.+.|++++|...+++..+
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555555555544421 112333345555555555555555555544
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=14 Score=36.56 Aligned_cols=85 Identities=9% Similarity=-0.008 Sum_probs=46.9
Q ss_pred HHHHHcCCHHHHHHHHHhccc------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRK------------------RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF 232 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~------------------~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 232 (475)
+.|.|.|++..|..-|+.... .-+.+++.|..+|.+.+++.+|++.-+..++.+ .+|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 578899999999988876431 012245555555556666666555555544432 1233333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHh
Q 038373 233 LVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 233 ~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
----.+|...|+++.|...|..+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Confidence 333344445555555555555554
No 241
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=84.88 E-value=11 Score=37.83 Aligned_cols=142 Identities=11% Similarity=0.089 Sum_probs=97.3
Q ss_pred hccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-CHHHHHHHHHHH--HhcCCh
Q 038373 139 GNLKSIEMGKRVHELLRTSAF-VK----DVELNNKLIEMYGKCCNTRLARKVFDQLRKR-NLSSWHLMISGY--AANGQG 210 (475)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~-~~~tyn~li~~~--~~~g~~ 210 (475)
-+.+++.++.++|..+-+.-- .| ..+..+-+|++|.- .+++.....+.+..+. .-..|-.|..+. -+.|.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 467899999999998865421 11 13456778888875 4666666666666542 344566666663 467888
Q ss_pred HHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcCCHHHHHHHHH
Q 038373 211 ADGLMLFEQMRKT--GPHP------------DKETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVPGIEHYIAIIK 273 (475)
Q Consensus 211 ~~A~~l~~~M~~~--g~~p------------d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~~~~y~~li~ 273 (475)
++|++.|..-.+. +-+| |-+-=+..+..+...|++.+|..+++.|..+ .....++.+||-++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999888776654 4333 2222356677888999999999999988753 133468889999888
Q ss_pred HHHhcCCH
Q 038373 274 VLGSAGHL 281 (475)
Q Consensus 274 ~~~~~g~~ 281 (475)
+|++.=-+
T Consensus 176 mlsrSYfL 183 (549)
T PF07079_consen 176 MLSRSYFL 183 (549)
T ss_pred HHhHHHHH
Confidence 89886443
No 242
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.72 E-value=20 Score=30.23 Aligned_cols=89 Identities=12% Similarity=0.188 Sum_probs=54.3
Q ss_pred HHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHhcc---------cCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 038373 154 LRTSAFVKDV--ELNNKLIEMYGKCCNTRLARKVFDQLR---------KRNLSSWHLMISGYAANGQ-GADGLMLFEQMR 221 (475)
Q Consensus 154 m~~~g~~p~~--~~~~~Li~~~~k~g~~~~A~~~f~~m~---------~~~~~tyn~li~~~~~~g~-~~~A~~l~~~M~ 221 (475)
|.+.+..++. ...|++++-...-+++....++++.+. ..+-.+|++++.+..+..- ---+..+|+-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3334444443 234555555555555555555555553 1234478888888765554 234677788888
Q ss_pred HcCCCCCHHHHHHHHHHHHcc
Q 038373 222 KTGPHPDKETFLVVFAACASA 242 (475)
Q Consensus 222 ~~g~~pd~~t~~~li~~~~~~ 242 (475)
+.+.+++..-|-.+|.+|.+-
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC
Confidence 777788888888888876553
No 243
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.69 E-value=7.2 Score=30.27 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHH
Q 038373 210 GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIK 273 (475)
Q Consensus 210 ~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~ 273 (475)
.-++.+-++.+....+.|+.....+.++||.+..++..|.++++.++.+.|. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3455666666777788999999999999999999999999999988865443 4556777763
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.55 E-value=24 Score=35.93 Aligned_cols=78 Identities=10% Similarity=0.135 Sum_probs=51.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHH
Q 038373 234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP-F-EP--TVEVWEALRNFAQI 309 (475)
Q Consensus 234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~-~-~p--~~~t~~~li~~~~~ 309 (475)
-+-.++-+.|+.++|.+.+++|.++....-+......||..|...+...++..++.+-. + -| -...|++.+--+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 35556678889999998888887543322234456678888889999999988888773 1 12 34566665544433
Q ss_pred cC
Q 038373 310 HG 311 (475)
Q Consensus 310 ~g 311 (475)
.|
T Consensus 344 v~ 345 (539)
T PF04184_consen 344 VG 345 (539)
T ss_pred hc
Confidence 33
No 245
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.52 E-value=11 Score=35.67 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
++..++..+...|+.+.+.+.++++.... .-|...|-.+|.+|.+.|+...|...|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44455555555555555555555555432 1245555555555555555555555554443
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.42 E-value=38 Score=32.14 Aligned_cols=192 Identities=14% Similarity=0.121 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHh----------cccCCCCH-----HHHHHHHHHHhccCCH---HHHHHHHHHHHHc
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQ----------DASASAGY-----DVFSSLLDSCGNLKSI---EMGKRVHELLRTS 157 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~----------~~~~~p~~-----~t~~~ll~~~~~~~~~---~~a~~~~~~m~~~ 157 (475)
+.||.-...+.+..++++|...+++ +....|+. .++..+..++-..+.. ++|..+++.+...
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e 116 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE 116 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 4577666666555488887776653 22233554 2356666677666654 4566666666443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-C--HHHHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038373 158 AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR-N--LSSWHLMISGY---AANGQGADGLMLFEQMRKTGPHPDKET 231 (475)
Q Consensus 158 g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~-~--~~tyn~li~~~---~~~g~~~~A~~l~~~M~~~g~~pd~~t 231 (475)
. .-...++--=|..+.+.++.+++.+++.+|... + ...+..++..+ ... ....|...++++....+.|..-.
T Consensus 117 ~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~ 194 (278)
T PF08631_consen 117 Y-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQ 194 (278)
T ss_pred C-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhH
Confidence 2 222445545566666688899999999888642 2 24555555555 333 34567777777777666665421
Q ss_pred H-----HHHHHHHHcc------CCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHH-------HHhcCCHHHHHHHHH
Q 038373 232 F-----LVVFAACASA------EAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKV-------LGSAGHLIEAEEFVE 289 (475)
Q Consensus 232 ~-----~~li~~~~~~------g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~-------~~~~g~~~~A~~~~~ 289 (475)
+ .+.+-..... ..++...++++.+....+...+..+-.++... +-+.+++++|.+.|+
T Consensus 195 ~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 195 WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 1 1111111221 12445555555444333444444444444333 334556666666654
No 247
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=84.18 E-value=29 Score=30.67 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC--CCcCCHHHHH
Q 038373 192 RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDY--GIVPGIEHYI 269 (475)
Q Consensus 192 ~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--g~~p~~~~y~ 269 (475)
|.+..---|-.+..+.|+..||...|++-..--+.-|......+-++....++..+|...++.+-+-. +-.||. .-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 44444456777788888888888888887654445577788888888888888888888888766321 223443 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHHcCCchHH
Q 038373 270 AIIKVLGSAGHLIEAEEFVERM-PFEPTV---EVWEALRNFAQIHGDVELE 316 (475)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~---~t~~~li~~~~~~g~~~~a 316 (475)
.+-..|...|+.++|+.-|+.. ..-|+. .-|..++ .+.|+.+++
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~L---a~qgr~~ea 212 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEML---AKQGRLREA 212 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHH---HHhcchhHH
Confidence 5556788888888888888766 333333 3344443 456655443
No 248
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=83.81 E-value=32 Score=30.83 Aligned_cols=53 Identities=13% Similarity=-0.002 Sum_probs=24.1
Q ss_pred HHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038373 104 SLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRT 156 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 156 (475)
.+.+.|++.+|.+.|++....-|+ ....-.+..++-+.|+++.|...++...+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666665554331111 12233444455555555555555555444
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=83.71 E-value=45 Score=34.12 Aligned_cols=162 Identities=10% Similarity=0.073 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
.+..|-.+ =+..+...-.++=++.....||..+.-+++ +--....+.++.+++++..+.|= - .|.+.
T Consensus 171 Aq~IMq~A-WRERnp~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-~----------~lg~s 237 (539)
T PF04184_consen 171 AQEIMQKA-WRERNPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-A----------SLGKS 237 (539)
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-H----------hhchh
Confidence 33444433 344555555555555555446654432222 22234568899999998877651 0 11111
Q ss_pred CCHHHHHHHHHhcccCCH--HHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 038373 177 CNTRLARKVFDQLRKRNL--SSW--HLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 177 g~~~~A~~~f~~m~~~~~--~ty--n~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~ 251 (475)
...+..-...+.+..+|. ..| --|-.+.-+.|+.+||++.|++|.+.--.- +....-.||.++-..+.+.++..+
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 111111111122223332 221 224445567799999999999987653221 233667788999999999999998
Q ss_pred HHHHhhhCCC-cCCHHHHHHHH
Q 038373 252 FEIMKNDYGI-VPGIEHYIAII 272 (475)
Q Consensus 252 ~~~m~~~~g~-~p~~~~y~~li 272 (475)
+..-. +... +.-..+|++.+
T Consensus 318 L~kYd-Di~lpkSAti~YTaAL 338 (539)
T PF04184_consen 318 LAKYD-DISLPKSATICYTAAL 338 (539)
T ss_pred HHHhc-cccCCchHHHHHHHHH
Confidence 88765 2122 22356677644
No 250
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.61 E-value=0.3 Score=41.18 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=43.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHH
Q 038373 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADG 213 (475)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A 213 (475)
+|..+-+.+.++...++++.+.+.+-.-+....|.|+..|++.++.++..++++.... .-...++.-|-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455555566666666666666555455566667777777766555555555542221 2233444444555555555
Q ss_pred HHHHHH
Q 038373 214 LMLFEQ 219 (475)
Q Consensus 214 ~~l~~~ 219 (475)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
No 251
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.97 E-value=22 Score=30.12 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=14.1
Q ss_pred HcCCHHHHHHHHHhcccCC-HHHHHHHHHHHHhc
Q 038373 175 KCCNTRLARKVFDQLRKRN-LSSWHLMISGYAAN 207 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~~~-~~tyn~li~~~~~~ 207 (475)
+.|++++|.++|++..+.. ...|..-+.++|-.
T Consensus 56 ~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 56 ARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 3444444444444444332 22344444444443
No 252
>PRK11906 transcriptional regulator; Provisional
Probab=82.93 E-value=56 Score=33.19 Aligned_cols=75 Identities=7% Similarity=0.088 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 038373 144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KRNLS-SWHLMISGYAANGQGADGLMLFEQ 219 (475)
Q Consensus 144 ~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~~~~-tyn~li~~~~~~g~~~~A~~l~~~ 219 (475)
..+|.++-+...+.+ .-|......+-.++.-.|+++.|..+|++-. .||.. +|-..--..+-+|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555544 4455555555444455555666666665543 23221 222222223335555555555555
No 253
>PRK15331 chaperone protein SicA; Provisional
Probab=82.71 E-value=6.3 Score=33.98 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=43.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHH
Q 038373 140 NLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLML 216 (475)
Q Consensus 140 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l 216 (475)
..|++++|..+|..+...++ -|..-+..|-.+|-..+++++|...|...- ..|...+--+-.+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 45666666666666655442 223334445555555566666666665321 22333344445556666666666666
Q ss_pred HHHHHH
Q 038373 217 FEQMRK 222 (475)
Q Consensus 217 ~~~M~~ 222 (475)
|....+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 665544
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=82.16 E-value=75 Score=33.92 Aligned_cols=118 Identities=7% Similarity=-0.049 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHhccc-CC----------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 038373 90 RGNAQLESLDVNLLSLCKEGKVREAIEYMGQDAS-AS----------AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSA 158 (475)
Q Consensus 90 ~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~-~~----------p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 158 (475)
.+.|....|..|...-.+.-.++-|...|-+-.. .| .+...--+=|.+| -|.+++|.++|-+|-++.
T Consensus 687 EdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 687 EDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred hcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh
Confidence 3578888888777766666667777776654221 00 0111111122222 389999999999887654
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC---HHHHHHHHHHHHhcCChHHHHHHHH
Q 038373 159 FVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--RN---LSSWHLMISGYAANGQGADGLMLFE 218 (475)
Q Consensus 159 ~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~---~~tyn~li~~~~~~g~~~~A~~l~~ 218 (475)
+ -|..+.+.|++-...++++.=.. -| ...|+.+-..++....+++|.+.+.
T Consensus 765 L---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 765 L---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred h---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35666777777666666653211 01 1245555555555545555544443
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=82.01 E-value=2.8 Score=25.79 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQL 189 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m 189 (475)
+|+.|-+.|.+.|++++|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4778889999999999999999873
No 256
>PHA02875 ankyrin repeat protein; Provisional
Probab=82.01 E-value=14 Score=37.18 Aligned_cols=195 Identities=10% Similarity=0.007 Sum_probs=99.9
Q ss_pred HHHHHHcCChHHHHHHHHhcccCCCCHHH--HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Q 038373 102 LLSLCKEGKVREAIEYMGQDASASAGYDV--FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE--LNNKLIEMYGKCC 177 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~Li~~~~k~g 177 (475)
+..-++.|+.+-+..+++.+.. |+... ..+.|..++..|+.+ +.+.+.+.|..|+.. ...+.+...++.|
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~~--~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGIN--PNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3445677888777777776543 33221 234455556667765 444555667655533 1234566677888
Q ss_pred CHHHHHHHHHhcccCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCCHHHHHHHH
Q 038373 178 NTRLARKVFDQLRKRNLS---SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF--LVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 178 ~~~~A~~~f~~m~~~~~~---tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~--~~li~~~~~~g~~~~a~~~~ 252 (475)
+.+.+..+++.-...+.. .-++.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-+..++
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 888888887754321111 112233334455654 455555666776654321 23444555677776555444
Q ss_pred HHHhhhCCCcCCH---HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCc
Q 038373 253 EIMKNDYGIVPGI---EHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEV---WEALRNFAQIHGDV 313 (475)
Q Consensus 253 ~~m~~~~g~~p~~---~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t---~~~li~~~~~~g~~ 313 (475)
+ .|..++. .-+ +.+...+..|+.+-+..+++ .|..++... ..+++...+..|+.
T Consensus 156 ~-----~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~ 215 (413)
T PHA02875 156 D-----HKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKI 215 (413)
T ss_pred h-----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCH
Confidence 3 2443332 222 33334455677655444443 443444322 12445544556664
No 257
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.99 E-value=5.3 Score=38.01 Aligned_cols=97 Identities=9% Similarity=-0.029 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASAS-----AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN 167 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-----p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 167 (475)
...++-..++..-....+++++...+-+..... |+. +-.+++.-|-+ -+.+++..+...=++.|+-||-++++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHH
Confidence 344455556666666777888887654332211 221 22233333333 36778888888888899999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccc
Q 038373 168 KLIEMYGKCCNTRLARKVFDQLRK 191 (475)
Q Consensus 168 ~Li~~~~k~g~~~~A~~~f~~m~~ 191 (475)
.||+.+.+.++..+|.++.-+|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999988777654
No 258
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.53 E-value=14 Score=37.68 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=62.2
Q ss_pred HHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHH
Q 038373 104 SLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGKCCNTRL 181 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k~g~~~~ 181 (475)
+.+..|+++.|+.+|-+..... +|.+-|+.=..++++.|++++|.+=-..-++ +.|+ ..-|+-+-.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 4456777888888776644433 4666677777777777777776654444333 3454 3356666666666677777
Q ss_pred HHHHHHhccc--C-CHHHHHHHHHHH
Q 038373 182 ARKVFDQLRK--R-NLSSWHLMISGY 204 (475)
Q Consensus 182 A~~~f~~m~~--~-~~~tyn~li~~~ 204 (475)
|..-|.+=.+ | |-..++-+..++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 7777776543 2 455666666666
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.09 E-value=2.4 Score=27.47 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYD 129 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~ 129 (475)
.|..+-..|.+.|++++|.++|++.....|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 456677778888888888888887766556543
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=80.93 E-value=3.6 Score=26.58 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKT 223 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~ 223 (475)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566677777777777777777777764
No 261
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.91 E-value=23 Score=29.43 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH 226 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~ 226 (475)
.+.-++.+.+.|+-|.-.+++.++. +++....-.+-.+|.+.|+..+|-+++++.-+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3444555666666666666666553 344444455566666666666666666666666654
No 262
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.84 E-value=4.1 Score=25.46 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMR 221 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~ 221 (475)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356666666677777777776666654
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=80.60 E-value=18 Score=29.95 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=58.2
Q ss_pred HHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHHHcCCH
Q 038373 104 SLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI---EMYGKCCNT 179 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li---~~~~k~g~~ 179 (475)
+++..|+.+.|++.|.+....-| ....||.--.++--.|+.++|..=+++..+..-...-..+.+.+ ..|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 57889999999999988655433 55678888888888889988888887776642122333333332 235556777
Q ss_pred HHHHHHHHhc
Q 038373 180 RLARKVFDQL 189 (475)
Q Consensus 180 ~~A~~~f~~m 189 (475)
+.|+.=|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 7777766654
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=79.88 E-value=33 Score=28.42 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=26.0
Q ss_pred HHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMR 221 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~ 221 (475)
+.+..|+++.|.+.|.+-.. .+...||.=..+|--.|+.++|++=+++..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555554332 244455555555555555555555554443
No 265
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.56 E-value=21 Score=30.24 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=47.0
Q ss_pred HHHHHHHHHH---HcCCHHHHHHHHHhcc--cC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 165 LNNKLIEMYG---KCCNTRLARKVFDQLR--KR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVF 236 (475)
Q Consensus 165 ~~~~Li~~~~---k~g~~~~A~~~f~~m~--~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li 236 (475)
+.+.||+... ..++.+++..+++.|. .| .+.++-..| +...|++++|+++|++..+.+..+ .|..-+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL 83 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHH
Confidence 3444444332 3688888998888886 34 333555554 577899999999999988765322 455555
Q ss_pred HHHHcc
Q 038373 237 AACASA 242 (475)
Q Consensus 237 ~~~~~~ 242 (475)
.++|-.
T Consensus 84 ~A~CL~ 89 (153)
T TIGR02561 84 LALCLN 89 (153)
T ss_pred HHHHHH
Confidence 555543
No 266
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.18 E-value=30 Score=27.14 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=31.7
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038373 171 EMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG 224 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g 224 (475)
..+...|++++|..+.+.+.-||+..|-+|-. .+.|..+++..-+.+|..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34555677777777777666677777766543 34555555555555665555
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.24 E-value=45 Score=29.19 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=63.2
Q ss_pred HHcCCHHHHHHHHHhcccCCHHHHHHHH-----HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-H--HHHccCCH
Q 038373 174 GKCCNTRLARKVFDQLRKRNLSSWHLMI-----SGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVF-A--ACASAEAV 245 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~~~~~tyn~li-----~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li-~--~~~~~g~~ 245 (475)
++.+..++|+.-|..+++.+--.|-.|- ....+.|+..+|...|++.-...-.|-..-=..-+ . .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4556677777777777665554444432 23456677777777777776654444333111111 1 23455666
Q ss_pred HHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 246 KEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 246 ~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+....-.+-+..+ +-.-....-.+|--+-.+.|++.+|...|..+
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 6655555544421 11111112235555556777777777777776
No 268
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.15 E-value=1.2 Score=37.40 Aligned_cols=48 Identities=6% Similarity=0.119 Sum_probs=19.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 250 (475)
.|.+.+.+.....+++.+...+..-+....+.++..|++.+..++..+
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~ 63 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE 63 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH
Confidence 333344444444444444443333334444444444444443333333
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=76.66 E-value=6.5 Score=23.41 Aligned_cols=27 Identities=11% Similarity=0.215 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
+|..+-..|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666666666666666554
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.42 E-value=1e+02 Score=34.98 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=28.0
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 236 FAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 236 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+.+|-..|+|.+|..+..++.. |-.--..+--.|+.-+...|+.-+|-++..+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4455556666666666665542 22111222245555566666666666655555
No 271
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=76.30 E-value=51 Score=28.61 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHH
Q 038373 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAII 272 (475)
Q Consensus 193 ~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li 272 (475)
+...|..+|..+.+.|++. .+.++...++-||.......+-.+.. ....+.++--.|..+.+. .|..++
T Consensus 28 ~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~-----~~~~ii 96 (167)
T PF07035_consen 28 QHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT-----AYEEII 96 (167)
T ss_pred CHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh-----hHHHHH
Confidence 4445555555566666533 34455556666666665555433322 233444444444433221 367788
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373 273 KVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
+.+-..|++-+|.++.+..+. -+.+....++.+..+.++...--.++..+.+
T Consensus 97 evLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 97 EVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888899999999999988631 2344445677777777776544555555544
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.24 E-value=50 Score=28.41 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=49.9
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhcccCCH-HHHHHHHHHHHhcCChHHH
Q 038373 138 CGNLKSIEMGKRVHELLRTSAFVKD---VELNNKLIEMYGKCCNTRLARKVFDQLRKRNL-SSWHLMISGYAANGQGADG 213 (475)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~-~tyn~li~~~~~~g~~~~A 213 (475)
-.+.++.+.+..++..+.-. .|. ..++-.. .+.+.|++.+|.++|+++.+... ..|..-+.++|-...-+..
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34556777777777777543 333 3333333 35567888888888888765322 3444445555554444444
Q ss_pred HHHH-HHHHHcCCCCCHHH
Q 038373 214 LMLF-EQMRKTGPHPDKET 231 (475)
Q Consensus 214 ~~l~-~~M~~~g~~pd~~t 231 (475)
.+.+ +++.+.+-.|+...
T Consensus 96 Wr~~A~evle~~~d~~a~~ 114 (160)
T PF09613_consen 96 WRRYADEVLESGADPDARA 114 (160)
T ss_pred HHHHHHHHHhcCCChHHHH
Confidence 4444 34555555555443
No 273
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=75.93 E-value=26 Score=29.44 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=22.2
Q ss_pred hcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 206 ANGQGADGLMLFEQMRKTGP--HPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~--~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
+.|++++|.+.|+.+...=. .-....-.-|+.++.+.+++++|...++...
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34445555555554443210 0122233444445555555555555544444
No 274
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=74.87 E-value=15 Score=36.32 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=43.2
Q ss_pred HHHHHHHH--HHHcCChHHHHHHHHhcccCC-CCHHH----HHHHHHHHhccCCHHHHHHHHHH
Q 038373 97 SLDVNLLS--LCKEGKVREAIEYMGQDASAS-AGYDV----FSSLLDSCGNLKSIEMGKRVHEL 153 (475)
Q Consensus 97 ~~n~li~~--~~~~g~~~~A~~l~~~~~~~~-p~~~t----~~~ll~~~~~~~~~~~a~~~~~~ 153 (475)
++-..+.+ +|+.|+.+..+.+|+.....| -|..| |.-|-++|.-.+++++|.++|..
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 45555554 899999999999999877766 33333 66677788888999999998753
No 275
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.61 E-value=42 Score=33.22 Aligned_cols=94 Identities=13% Similarity=0.015 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLR---KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~---~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~ 239 (475)
..+++.|.-+|.|.+++..|.+.-+... .+|+..-===-.+|...|+++.|...|+.+++ +.|+...-..=|..|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 3456667777777777777777666443 34554333334567777888888888888887 567666555444444
Q ss_pred -HccCCHHH-HHHHHHHHhhh
Q 038373 240 -ASAEAVKE-GFLYFEIMKND 258 (475)
Q Consensus 240 -~~~g~~~~-a~~~~~~m~~~ 258 (475)
-+..+..+ ..++|..|-.+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 33344433 36777777643
No 276
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=73.35 E-value=16 Score=29.20 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999999877
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.99 E-value=71 Score=31.00 Aligned_cols=93 Identities=12% Similarity=-0.071 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHH
Q 038373 127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS---AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLM 200 (475)
Q Consensus 127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~l 200 (475)
|...++..=.+|.-.|+.+.-...++.+.-. +++-.+++...+--++..+|-+++|++.-++-.+- |.-+-.++
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~ 215 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAK 215 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHH
Confidence 4445666666777777777666666666432 22222333334444555677777777777765543 43444555
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 038373 201 ISGYAANGQGADGLMLFEQ 219 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~ 219 (475)
-..+-.+|++.++.++..+
T Consensus 216 aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 216 AHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhcchhhhHHHHHHh
Confidence 5666667777777776655
No 278
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.94 E-value=37 Score=28.70 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCC-------CCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASAS-------AGYDVFSSLLDSCGNLKS-IEMGKRVHELLRTSAFVKDVELNNKL 169 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~-------p~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~L 169 (475)
.|.++.-.+..+++.-.+.+++.+.... .+..+|++++++.++... --.+..+|..|++.+.+.+..-|-.|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555555555555555544332211 333446666666655444 33345566666655555666666666
Q ss_pred HHHHHH
Q 038373 170 IEMYGK 175 (475)
Q Consensus 170 i~~~~k 175 (475)
|.+..+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555443
No 279
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.93 E-value=7.9 Score=24.06 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
..+++.|-..|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3578899999999999999999988753
No 280
>PRK15331 chaperone protein SicA; Provisional
Probab=72.76 E-value=32 Score=29.71 Aligned_cols=83 Identities=11% Similarity=-0.077 Sum_probs=53.6
Q ss_pred HHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373 174 GKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 250 (475)
-..|++++|..+|.-.. .+ |..=|..|-.+|-..+++++|+.+|...-.-+. -|...+--.-.++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 35688888888887554 33 444566666666677888888888876554332 133333344456667788888888
Q ss_pred HHHHHhh
Q 038373 251 YFEIMKN 257 (475)
Q Consensus 251 ~~~~m~~ 257 (475)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 8887774
No 281
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=72.68 E-value=96 Score=31.34 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC-hhhhccC
Q 038373 268 YIAIIKVLGSAGHLIEAEEFVERMPF--EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK-AIVDKIP 337 (475)
Q Consensus 268 y~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~-~~~~~~~ 337 (475)
...|+.-|--.|++.+|.+.++++|+ --..+.+.+++-+.-+.|+- ...++++++.-..+ ++.+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~---t~~ldLLk~cf~sglIT~nQMt 581 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDS---TMILDLLKECFKSGLITTNQMT 581 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhcCceeHHHhh
Confidence 35778889999999999999999863 24578899999999999885 47788887754444 3344554
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=71.35 E-value=6.5 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccCCC
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASASA 126 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p 126 (475)
.+|..+-..|...|++++|+..|++.....|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3566666667777777777777766554334
No 283
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.35 E-value=36 Score=26.73 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=31.3
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.+...|++++|+.+.+.+ +.||...|..|-.. +.|.-+....-+..|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 456677777777777665 57777777666443 5566665555555565
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.34 E-value=84 Score=34.28 Aligned_cols=111 Identities=11% Similarity=0.056 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSC----GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
-.-|+-+++...++-|+.+-+.-. .|..+...+...| -+.|++++|..-|-+-... ++| .-+|.-|-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 345666777777777777765432 2334443444333 3456777766555443221 122 11233333
Q ss_pred HcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHH
Q 038373 175 KCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFE 218 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~ 218 (475)
++.++.+--.+++.+.+. +...-+.|+++|.+.++.++-.++.+
T Consensus 409 daq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHh
Confidence 333333333444444332 22233455555555555555444443
No 285
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=69.26 E-value=49 Score=32.97 Aligned_cols=145 Identities=12% Similarity=-0.062 Sum_probs=78.7
Q ss_pred HHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------
Q 038373 105 LCKEGKVREAIEYMGQDASASAGYDVFSSLLDSC--GNLKSIEMGKRVHELLRTSAFVKDVELNNKL------------- 169 (475)
Q Consensus 105 ~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L------------- 169 (475)
+.-.|+.++|.+.=....+..++ -.+..++++. --..+.+.|...|++.++.+ ||...--++
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence 44566666666553332221111 1233333332 23456666666666655443 333322211
Q ss_pred HHHHHHcCCHHHHHHHHHhcc-------cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH--HH
Q 038373 170 IEMYGKCCNTRLARKVFDQLR-------KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE-TFLVVFA--AC 239 (475)
Q Consensus 170 i~~~~k~g~~~~A~~~f~~m~-------~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~li~--~~ 239 (475)
-+...|.|++.+|.+.|.+-. ++++..|-..-....+.|+.++|+.--++-.. .|.. ....+.. ++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHH
Confidence 133456788888888887654 23455666666777778888888777666543 2322 2233333 34
Q ss_pred HccCCHHHHHHHHHHHh
Q 038373 240 ASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 240 ~~~g~~~~a~~~~~~m~ 256 (475)
-..++|++|.+-++...
T Consensus 332 l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677888887777655
No 286
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.19 E-value=35 Score=31.91 Aligned_cols=94 Identities=19% Similarity=0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCC-CCHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFV-KDVELNNKLI 170 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~-p~~~~~~~Li 170 (475)
.|+.-+. +.+.|++.+|.+.|..-...-|+. ..+--|..++...|+.+.|-.+|..+.+. +-. .-....--|-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5777664 456777888888887755533332 23555777777888888888888777653 111 1224455555
Q ss_pred HHHHHcCCHHHHHHHHHhccc
Q 038373 171 EMYGKCCNTRLARKVFDQLRK 191 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~ 191 (475)
....+.|+.++|...|++..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 566677777777777776653
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=68.99 E-value=7.5 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHH
Q 038373 162 DVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 162 ~~~~~~~Li~~~~k~g~~~~A 182 (475)
|...|+.|-..|...|+.++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444444444444444
No 288
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.97 E-value=41 Score=30.09 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=53.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------cCCHHHHHHHHHHHHhcCChH
Q 038373 139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR-------KRNLSSWHLMISGYAANGQGA 211 (475)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~-------~~~~~tyn~li~~~~~~g~~~ 211 (475)
.+.|+ +.|.+.|-.+...+.--|+...-+|-..|. ..+.++|..++-... +.|...+.+|++.|-+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 567777778877776677777777777776 457777777776543 346778888888888888888
Q ss_pred HHH
Q 038373 212 DGL 214 (475)
Q Consensus 212 ~A~ 214 (475)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 289
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.93 E-value=21 Score=28.11 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 146 MGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 146 ~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
+.++-++.+....+.|++.+..+.+.++-|.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555556667777777777777777777777777777666
No 290
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.09 E-value=1e+02 Score=33.01 Aligned_cols=86 Identities=17% Similarity=0.109 Sum_probs=41.7
Q ss_pred HHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHc---CC
Q 038373 103 LSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSA-FVKDVELNNKLIEMYGKC---CN 178 (475)
Q Consensus 103 ~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~Li~~~~k~---g~ 178 (475)
..+.-.|+++.|.+.+-+......|.+.+.+.+..++-.+-.+... ..+.... -.|...-+..||..|++. .+
T Consensus 266 ~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhccC
Confidence 3456679999999988762222267777777777665443222221 2222111 011125577888888873 56
Q ss_pred HHHHHHHHHhccc
Q 038373 179 TRLARKVFDQLRK 191 (475)
Q Consensus 179 ~~~A~~~f~~m~~ 191 (475)
..+|.+.|--+..
T Consensus 343 ~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 343 PREALQYLYLICL 355 (613)
T ss_dssp HHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766653
No 291
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.85 E-value=1.2e+02 Score=29.04 Aligned_cols=135 Identities=12% Similarity=0.065 Sum_probs=76.4
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC-HHHHHH---HHHHHHhcCChHH
Q 038373 137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRN-LSSWHL---MISGYAANGQGAD 212 (475)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~-~~tyn~---li~~~~~~g~~~~ 212 (475)
.....+++.+|..+|+...... .-+...--.|..+|...|+++.|..+++.++... ..-|.. =|.-+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456788888888888877653 2234556677888889999999999999887431 112222 2222333333333
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHH-HHHHhhhCCCcCCHHHHHHHHHHHH
Q 038373 213 GLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLY-FEIMKNDYGIVPGIEHYIAIIKVLG 276 (475)
Q Consensus 213 A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~-~~~m~~~~g~~p~~~~y~~li~~~~ 276 (475)
...+-.+.-. .| |...=..+-..+...|+.++|.+. +..|+++.|.. |...-..||+.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~ 283 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHH
Confidence 3333333322 35 444445566667777888877654 44454444444 2233444444333
No 292
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=67.79 E-value=67 Score=33.31 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc--cCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLR--KRNLS---SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA 240 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~--~~~~~---tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~ 240 (475)
...|+.-|.+.+++++|..++..|. .-... +-+.+.+.+.+..--++....++.+...=..|..-.-.....-|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 3467889999999999999999986 11233 344445555555444555555555543322222111111111111
Q ss_pred ccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHH
Q 038373 241 SAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELED 317 (475)
Q Consensus 241 ~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~ 317 (475)
..+.+..+ -+..-+.|.+++++|.-+--++| .+|.+ --+-......|+.+.|+
T Consensus 491 --------d~V~~~aR-------------RfFhhLLR~~rfekAFlLAvdi~-~~DLF--mdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 491 --------DPVSDLAR-------------RFFHHLLRYQRFEKAFLLAVDIG-DRDLF--MDLHYLAKDKGELALAE 543 (545)
T ss_pred --------HHHHHHHH-------------HHHHHHHHhhHHHHHHHHHHhcc-chHHH--HHHHHHHHhccchhhhh
Confidence 11111111 23344556788888888887776 33432 22323334456665544
No 293
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.45 E-value=25 Score=31.84 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=27.1
Q ss_pred HHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 038373 100 VNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHE 152 (475)
Q Consensus 100 ~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~ 152 (475)
..|+.+.+.+...+|+.+.++-++.+| |..+-..++..+|-.|++++|..-++
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHH
Confidence 344455555666666665555444333 22334455555555555555544443
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=66.83 E-value=13 Score=21.87 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.|..+-..|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666666666666666554
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=66.81 E-value=32 Score=26.82 Aligned_cols=47 Identities=11% Similarity=0.067 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 144 ~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
.-+.++-++.+....+.|+..+..+-+.++-|.+++..|.++|+..+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455555556666667777777777777777777777777777665
No 296
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=66.18 E-value=13 Score=20.81 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=10.5
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 038373 168 KLIEMYGKCCNTRLARKVFD 187 (475)
Q Consensus 168 ~Li~~~~k~g~~~~A~~~f~ 187 (475)
.|-..+...|+.++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555544
No 297
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=65.66 E-value=1e+02 Score=27.57 Aligned_cols=165 Identities=16% Similarity=0.067 Sum_probs=89.5
Q ss_pred HhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C--CHHHHHHHHHHHHhcCChH
Q 038373 138 CGNLKSIEMGKRVHELLRTSAF--VKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R--NLSSWHLMISGYAANGQGA 211 (475)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~--~~~tyn~li~~~~~~g~~~ 211 (475)
+...|++++|.+.|+.+...-- .--....-.+..+|-+.|+.++|...|++..+ | ..+.|--.+.|.+.-....
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 4567889999999999877521 11223444667788899999999999888753 2 2233444444433221111
Q ss_pred HHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 038373 212 DGLMLFEQMRKTGPHPD-------KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284 (475)
Q Consensus 212 ~A~~l~~~M~~~g~~pd-------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A 284 (475)
..+ ....| ..+|..+|.-+=...-..+|......+.+. + ...--.+..-|-+.|....|
T Consensus 95 ~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~--l---a~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 95 GIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR--L---AEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH--H---HHHHHHHHHHHHCTT-HHHH
T ss_pred cch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHcccHHHH
Confidence 110 00111 124455555666666666676665555532 1 01112355668888888888
Q ss_pred HHHHHhC-CCCCC----HHHHHHHHHHHHHcCCchHH
Q 038373 285 EEFVERM-PFEPT----VEVWEALRNFAQIHGDVELE 316 (475)
Q Consensus 285 ~~~~~~m-~~~p~----~~t~~~li~~~~~~g~~~~a 316 (475)
..-|+.+ .-=|+ ....-.|+.+|.+.|..+.+
T Consensus 161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 8777776 11122 23455677788888877533
No 298
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.47 E-value=68 Score=25.55 Aligned_cols=79 Identities=8% Similarity=0.008 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
..++|..|.+.+...|- -...+--+-+..+.+.|++++|...=.....||+..|-+|-. .+.|..+++..-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45677777777776653 222333333445667777777744333444677777766543 356666666666666655
Q ss_pred cC
Q 038373 223 TG 224 (475)
Q Consensus 223 ~g 224 (475)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 299
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.32 E-value=1.3e+02 Score=28.71 Aligned_cols=137 Identities=15% Similarity=0.075 Sum_probs=90.1
Q ss_pred HHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a 248 (475)
.....|++.+|..+|+.... .+...--.|+.+|...|+.++|..++..+-..--.........-|..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 45668999999999987753 244455678889999999999999999876543333333333334444444444444
Q ss_pred HHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCc
Q 038373 249 FLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-----PFEPTVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 249 ~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~t~~~li~~~~~~g~~ 313 (475)
..+-.... -.| |...--.|-..|.-.|+.++|.+.+-.+ +. -|...-..|+..+.-.|..
T Consensus 223 ~~l~~~~a----adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 223 QDLQRRLA----ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCC
Confidence 44444443 246 5555667888899999999998876555 32 3455556666666655543
No 300
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=64.79 E-value=1.5e+02 Score=29.40 Aligned_cols=156 Identities=10% Similarity=0.032 Sum_probs=74.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHhcc----cCCHHHHHHHHHH
Q 038373 134 LLDSCGNLKSIEMGKRVHELLRTSA---FVKDVELNNKLIEMYGK---CCNTRLARKVFDQLR----KRNLSSWHLMISG 203 (475)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~Li~~~~k---~g~~~~A~~~f~~m~----~~~~~tyn~li~~ 203 (475)
++-+|-...+++...++.+.|...- +.-...+---..-++-| .|+.++|.+++..+. .++.-+|..+-..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334555556666666666665431 11111111122233444 566666666665522 1233445444433
Q ss_pred HHh---------cCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCC-HHHHHHHH---HHHhhhCCC---cCC
Q 038373 204 YAA---------NGQGADGLMLFEQMRKTGPHPDKE---TFLVVFAACASAEA-VKEGFLYF---EIMKNDYGI---VPG 264 (475)
Q Consensus 204 ~~~---------~g~~~~A~~l~~~M~~~g~~pd~~---t~~~li~~~~~~g~-~~~a~~~~---~~m~~~~g~---~p~ 264 (475)
|-. ....++|+..|.+--+ +.||.. -+.+|+........ -.+..++- ..+.-+.|. ..|
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 322 1124566666654322 334432 33444444333111 11222222 221111132 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 265 IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 265 ~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
---+.++..+..=.|+.++|.+..++|
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455678889999999999999999888
No 301
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=64.16 E-value=1.5e+02 Score=29.16 Aligned_cols=195 Identities=11% Similarity=0.001 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHH-Hhccc---CC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC---CHH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYM-GQDAS---AS---AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVK---DVE 164 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~-~~~~~---~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p---~~~ 164 (475)
.+|..+..+.++.|.+++++..- .+|.- .. .-...|-.+-+++-+.-++.++.++-..-... |..| --.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 45677777888888888877642 12111 00 11223445555555555555555554443332 2222 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc-------cC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLR-------KR--NLSSWHLMISGYAANGQGADGLMLFEQMRK----TGPHPDKET 231 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~-------~~--~~~tyn~li~~~~~~g~~~~A~~l~~~M~~----~g~~pd~~t 231 (475)
..-++-+++.-.+.++++.+-|+..- ++ ....|-.|-+-|.+..++++|+-+.....+ -|+.--..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 33345555666667888888877543 22 234788888888998998888766554332 233221222
Q ss_pred HH-----HHHHHHHccCCHHHHHHHHHHHhh---hCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 232 FL-----VVFAACASAEAVKEGFLYFEIMKN---DYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 232 ~~-----~li~~~~~~g~~~~a~~~~~~m~~---~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
|- -+--++...|.+..|.+.-++..+ .+|=.+- ....-++-+.|-..|++|.|+.-++.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 32 233466777777777777666441 1232221 22334777889999999988877654
No 302
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.02 E-value=1.2e+02 Score=28.09 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=104.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDAS-ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
|----.+|-.+.++++|..-+.+... ..-|..-| -.....+.|--+.++|.+. .--+..|+--+.+|..+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh
Confidence 34444456666666666554443221 00111111 1123345555566666543 12345677778888888
Q ss_pred CCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373 177 CNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKT---G--PHPDKETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 177 g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~---g--~~pd~~t~~~li~~~~~~g~~~~a~~~ 251 (475)
|..+-|-..++.--+ ...+-++++|++++++-..- + .+.-..-|..+-..+.+..++++|-..
T Consensus 105 GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred CCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 887777666654321 12234455555555543221 0 001111233344556666677766554
Q ss_pred HHHHh---hhCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC---C---CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 038373 252 FEIMK---NDYGIVPGI-EHYIAIIKVLGSAGHLIEAEEFVERM---P---FEPTVEVWEALRNFAQIHGDVELEDRA 319 (475)
Q Consensus 252 ~~~m~---~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~~~~~m---~---~~p~~~t~~~li~~~~~~g~~~~a~~~ 319 (475)
+..-. .+..-.++. ..|-+.|-.|.-..++..|++.++.- + -.-|..+...||.+|- .|+.|.+..+
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 43221 011112222 23556666677778999999999983 1 1246778888999886 6777554443
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=63.99 E-value=98 Score=26.87 Aligned_cols=121 Identities=15% Similarity=0.082 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYA 205 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~ 205 (475)
|+...|..+|+.+.+.|++.. +..+...++-+|.......+-.+.. ....+.++=-.|-++=-..+..++..+.
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~~~~~iievLL 100 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGTAYEEIIEVLL 100 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 666677777777777776543 3344445555555444443332222 2223333333333222234556666777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
..|++-+|+++.+.... -+.+....++.+-.+.++-..=..+++...
T Consensus 101 ~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 101 SKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777766422 122223445556555555544444444333
No 304
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.51 E-value=17 Score=25.62 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 179 TRLARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 179 ~~~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
+++..++++.++ ..|..--=.+|.||...|++++|.+..+++..
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455555544 23444444566777777777777776666543
No 305
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.25 E-value=25 Score=31.25 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=27.7
Q ss_pred ccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 241 SAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 241 ~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
...+-+......+...+-....|+..+|..++..+...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444334334443333345566666666666666666666666666655
No 306
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=63.11 E-value=1.1e+02 Score=27.20 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc------CCHHHHHHHHH-HHHhcCCh--HHHHHHHHHHHHcCCCCC
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLRK------RNLSSWHLMIS-GYAANGQG--ADGLMLFEQMRKTGPHPD 228 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~~------~~~~tyn~li~-~~~~~g~~--~~A~~l~~~M~~~g~~pd 228 (475)
++...-.....|++++|.+-++++.+ +-...|+.+.. |||.++.- -+|.-++.-... |..|.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~-~~~ps 102 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD-GRLPS 102 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc-CCCCC
Confidence 44444445566788888888777753 24457777776 77777653 455555554443 34443
No 307
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.90 E-value=1.4e+02 Score=31.56 Aligned_cols=165 Identities=12% Similarity=0.009 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHH-----HHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 93 AQLESLDVNLLS-----LCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN 167 (475)
Q Consensus 93 ~~~~~~n~li~~-----~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 167 (475)
-++++|..++.. +.-.|+++.|-.++.... ...-+.+...+-+.|--++|+++- ..||..
T Consensus 579 ~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-----k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~r--- 643 (794)
T KOG0276|consen 579 LNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-----KEIRTKVAHFLESQGMKEQALELS-------TDPDQR--- 643 (794)
T ss_pred cceEeEeeehHHHHHHHHhhhccccccccccccCc-----hhhhhhHHhHhhhccchHhhhhcC-------CChhhh---
Confidence 456666555543 334567777766554432 233455556566666666555442 233322
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373 168 KLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE 247 (475)
Q Consensus 168 ~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~ 247 (475)
.....+.|+++.|.++..+. .+..-|..|-.+....|++..|.+.|..-. -|..|+-.+...|+-+.
T Consensus 644 --Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 644 --FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEG 710 (794)
T ss_pred --hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhH
Confidence 23345678999998876553 466789999999999999999999887654 35566667777777765
Q ss_pred HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038373 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP 292 (475)
Q Consensus 248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 292 (475)
...+-...+++ |.. |.-.-+|...|+++++.+++.+-+
T Consensus 711 l~~la~~~~~~-g~~------N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 711 LAVLASLAKKQ-GKN------NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHHHHHHHhh-ccc------chHHHHHHHcCCHHHHHHHHHhcC
Confidence 55555555533 542 444456778999999999998774
No 308
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.21 E-value=82 Score=25.93 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 212 DGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 212 ~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
|..+-++......+.|+....-.-+.||.+..++..|.++|+.++.+.|- -...|-.++ ++-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~--~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA--QKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc--HHHHHHHHH---------HHHHHHHHHh
Confidence 34455556666778999999999999999999999999999999865443 333566665 4566677777
Q ss_pred CC
Q 038373 292 PF 293 (475)
Q Consensus 292 ~~ 293 (475)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 64
No 309
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.92 E-value=82 Score=28.22 Aligned_cols=74 Identities=9% Similarity=-0.059 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC--CCcCCHHHHHHHHHHHHhcCCHHHHH
Q 038373 211 ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDY--GIVPGIEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 211 ~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--g~~p~~~~y~~li~~~~~~g~~~~A~ 285 (475)
++|++.|-++...+..-|....-.|..-| ...+.+++.+++....+-+ +-.+|...+.+|++.|-+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56777777777776554444444444333 4566777777766655321 22456677778888888887777764
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=59.95 E-value=23 Score=34.28 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=52.5
Q ss_pred HHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373 104 SLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A 182 (475)
-|.+.|++++|.+.|.......| |.++|..--.+|.+...+..|..=....+.. -...+.+|.|.|.-..+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHHHH
Confidence 47889999999999988766566 8888888888888888877665544444322 23346677776554444
Q ss_pred HHHHHh
Q 038373 183 RKVFDQ 188 (475)
Q Consensus 183 ~~~f~~ 188 (475)
+....+
T Consensus 178 Lg~~~E 183 (536)
T KOG4648|consen 178 LGNNME 183 (536)
T ss_pred HhhHHH
Confidence 444443
No 311
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.03 E-value=1.5e+02 Score=27.23 Aligned_cols=70 Identities=17% Similarity=0.148 Sum_probs=30.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038373 235 VFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQ 308 (475)
Q Consensus 235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~ 308 (475)
++.++...|+.+.|..+++.+.. .-.+...-..++.. ..+|.+.||..+-+...-+--...|..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 44445545555555555554431 11111112222333 344566666655555421111234555555444
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=58.88 E-value=16 Score=21.45 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhccc
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDAS 123 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~ 123 (475)
|..+-..|-+.|++++|.+.|++...
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455556666777777666666544
No 313
>PRK09687 putative lyase; Provisional
Probab=57.57 E-value=1.8e+02 Score=27.70 Aligned_cols=223 Identities=13% Similarity=-0.042 Sum_probs=124.3
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 038373 91 GNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSI----EMGKRVHELLRTSAFVKDVELN 166 (475)
Q Consensus 91 ~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~ 166 (475)
..+|....-..+.++.+.|.. ++...+..... .+|...=-..+.++++.|+- +++..++..+... .+|..+-
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS-SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 456676777777788777753 34444433321 25666666667777777753 4566666665332 5677777
Q ss_pred HHHHHHHHHcCC-----HHHHHHHHH-hcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 167 NKLIEMYGKCCN-----TRLARKVFD-QLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA 240 (475)
Q Consensus 167 ~~Li~~~~k~g~-----~~~A~~~f~-~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~ 240 (475)
.+.+.+++..+. ...+...+. .+..++..+=-..+.++++.|. .+|+..+-.+.+. +|...=...+.++.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg 184 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALN 184 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHh
Confidence 777777766542 123333332 2334555555566677777665 5677776666653 45455555556666
Q ss_pred ccC-CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 038373 241 SAE-AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRA 319 (475)
Q Consensus 241 ~~g-~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~ 319 (475)
+.+ .-..+...+..+.. .+|..+-..-+.++++.|..+-...+.+.+. .+++ .-..+.+....|.. .|..+
T Consensus 185 ~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 185 SNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred cCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-hHHHH
Confidence 543 13345555555552 2355566777788888887543333444444 2332 23456677777763 33444
Q ss_pred HHHHhccCCC
Q 038373 320 EELLGDLDPS 329 (475)
Q Consensus 320 ~~~l~~~~~~ 329 (475)
+..+.+-.++
T Consensus 257 L~~l~~~~~d 266 (280)
T PRK09687 257 LDTLLYKFDD 266 (280)
T ss_pred HHHHHhhCCC
Confidence 4444333333
No 314
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.16 E-value=21 Score=34.00 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 192 RNLS-SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVF 236 (475)
Q Consensus 192 ~~~~-tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li 236 (475)
+|.. =||.-|..-.+.|++++|+.|++|-++.|+.--..||..-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3444 36788888899999999999999999888876556665444
No 315
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.63 E-value=21 Score=23.30 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=14.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 038373 200 MISGYAANGQGADGLMLFEQMRKTG 224 (475)
Q Consensus 200 li~~~~~~g~~~~A~~l~~~M~~~g 224 (475)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3455666666666666666665443
No 316
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.13 E-value=82 Score=24.01 Aligned_cols=66 Identities=9% Similarity=0.047 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHH
Q 038373 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLM 215 (475)
Q Consensus 148 ~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~ 215 (475)
.+++..+.+.|+ .+......+-.+-...|+.+.|+++++.++ +..-.|...+.++-..|.-+-|.+
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 455555555553 222222322222234577777777777777 666677777777777776555543
No 317
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.43 E-value=1.3e+02 Score=28.40 Aligned_cols=87 Identities=16% Similarity=0.107 Sum_probs=52.4
Q ss_pred HHHHHhcCChHHHHHHHHH-HHH-cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh-
Q 038373 201 ISGYAANGQGADGLMLFEQ-MRK-TGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS- 277 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~-M~~-~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~- 277 (475)
|.+++..+++.+++...-+ -.. +.+.|...-..++ -|++.+....+.++-...... .-.-+...|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5667777777776653322 221 2344444444333 467888888777777666633 222234457777766665
Q ss_pred ----cCCHHHHHHHHHh
Q 038373 278 ----AGHLIEAEEFVER 290 (475)
Q Consensus 278 ----~g~~~~A~~~~~~ 290 (475)
.|.++||+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5999999998843
No 318
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.59 E-value=2e+02 Score=27.42 Aligned_cols=115 Identities=12% Similarity=0.188 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc-cC-CHHHHHHHHHHHhhhCCCcCCHHHHHHHHH
Q 038373 197 WHLMISGYAANGQGADGLMLFEQMRK-TGPHPDKETFLVVFAACAS-AE-AVKEGFLYFEIMKNDYGIVPGIEHYIAIIK 273 (475)
Q Consensus 197 yn~li~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~t~~~li~~~~~-~g-~~~~a~~~~~~m~~~~g~~p~~~~y~~li~ 273 (475)
|..|+. ++..+.+|+.+|+.... +.+--|..+...+++.... .+ ....-.++.+.+...+|-.++..+...+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666653 34456788888884322 3455577777777777655 22 344445677777766778888888999999
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCch
Q 038373 274 VLGSAGHLIEAEEFVERM----PFEPTVEVWEALRNFAQIHGDVE 314 (475)
Q Consensus 274 ~~~~~g~~~~A~~~~~~m----~~~p~~~t~~~li~~~~~~g~~~ 314 (475)
.+++.+++.+-.++++.- +..-|...|..+|......|+..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 999999999999999877 23458899999999999999963
No 319
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.47 E-value=2e+02 Score=27.41 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHhccc-----CCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373 177 CNTRLARKVFDQLRK-----RNLSSWHLMISGYAANGQ--GADGLMLFEQMRK-TGPHPDKETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 177 g~~~~A~~~f~~m~~-----~~~~tyn~li~~~~~~g~--~~~A~~l~~~M~~-~g~~pd~~t~~~li~~~~~~g~~~~a 248 (475)
..+.+|.++|+...- .|...-..+++......+ ...-.++.+-+.. .|-.++.-+..++|..+++.+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 447788888883321 244444455555544221 2222333333433 35678888999999999999999999
Q ss_pred HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
.++++.-....+..-|...|..+|+...+.|+..-..++.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999988774435566888999999999999999988888765
No 320
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.13 E-value=50 Score=21.86 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=15.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVF 236 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li 236 (475)
+.|..+++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444455555555555555555544444443
No 321
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=54.13 E-value=3.8e+02 Score=30.48 Aligned_cols=122 Identities=11% Similarity=0.170 Sum_probs=70.0
Q ss_pred HHHHHHHHcCChHHHHHHHHhcc-cC----CCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 038373 100 VNLLSLCKEGKVREAIEYMGQDA-SA----SAGYDVFSSLLDSCG-NLKSIEMGKRVHELLRTSAFVKDVELNNKLI--- 170 (475)
Q Consensus 100 ~li~~~~~~g~~~~A~~l~~~~~-~~----~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li--- 170 (475)
..|..+...+++.+|+.+.+.-. .. ..|+..|-.=+..+. +.++.+--..++..+.+..+.-. .|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~t--mY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKT--MYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccc--ccccccccc
Confidence 34567788999999999987521 11 145555444444443 33555555555555554433211 111111
Q ss_pred ---------HHHHHcCCHHHHHHHH-Hhcc-cCCH-HHHHHHHHHHHhcC--ChHHHHHHHHHHHHc
Q 038373 171 ---------EMYGKCCNTRLARKVF-DQLR-KRNL-SSWHLMISGYAANG--QGADGLMLFEQMRKT 223 (475)
Q Consensus 171 ---------~~~~k~g~~~~A~~~f-~~m~-~~~~-~tyn~li~~~~~~g--~~~~A~~l~~~M~~~ 223 (475)
..+...++++.....+ +.|. ..+. .-..++|.+|++.+ ++++|+.+..++++.
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 1222233444443333 4554 3333 34578899999998 889999999999876
No 322
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.54 E-value=66 Score=28.48 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 160 ~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
.|+..+|..++..+...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555554443
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=53.21 E-value=37 Score=19.88 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMR 221 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~ 221 (475)
+|..+-..|...|++++|.+.|++-.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666665544
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=53.09 E-value=73 Score=29.04 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhh-hCCCcCCHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKN-DYGIVPGIEHYIAIIK 273 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~g~~p~~~~y~~li~ 273 (475)
|-+..|+.+.+.+...+|+.+.++-.+. +| |.-+=..++.-+|-.|++++|..-++...+ .-...+...+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4456678899999999999998887765 34 555667889999999999999765554431 1134455677887775
Q ss_pred H
Q 038373 274 V 274 (475)
Q Consensus 274 ~ 274 (475)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 3
No 325
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=52.70 E-value=90 Score=27.77 Aligned_cols=72 Identities=10% Similarity=-0.053 Sum_probs=42.0
Q ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHHcCC--HHHHHHHH
Q 038373 112 REAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS--AFVKDVELNNKLIE-MYGKCCN--TRLARKVF 186 (475)
Q Consensus 112 ~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~Li~-~~~k~g~--~~~A~~~f 186 (475)
++++++-+++.+ ++...-.....|++++|.+-++.+.+. .++.-...|..+.. +||..+. +-+|.-+|
T Consensus 20 EE~l~lsRei~r-------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~ 92 (204)
T COG2178 20 EEALKLSREIVR-------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLY 92 (204)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHH
Confidence 566666666544 333344455668888888887777542 12222344555555 5666654 55777777
Q ss_pred Hhcc
Q 038373 187 DQLR 190 (475)
Q Consensus 187 ~~m~ 190 (475)
....
T Consensus 93 ~~l~ 96 (204)
T COG2178 93 SILK 96 (204)
T ss_pred HHHh
Confidence 6665
No 326
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=52.59 E-value=48 Score=21.96 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=27.4
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 138 CGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.-+.|-++++..+++.|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3466788888999999999998888888877765
No 327
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=52.25 E-value=91 Score=23.57 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHH
Q 038373 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADG 213 (475)
Q Consensus 148 ~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A 213 (475)
..++..+.+.|+-- ..-.-...+...+.+.|.++++..+.++-.+|.+...++-..|+..-|
T Consensus 19 ~~v~~~L~~~~Vlt----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFT----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCC----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 45677777777422 222223334556788899999999889989999999888888876655
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.55 E-value=3.7e+02 Score=29.64 Aligned_cols=115 Identities=8% Similarity=0.013 Sum_probs=68.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHh
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI----EMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAA 206 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li----~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~ 206 (475)
.-.-|+-.++..-++.|..+-+ ..+..+| +--.+. +-+.+.|++++|..-|-+-..- .-=..+|.-|..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHHHHHHhcC
Confidence 4445555566666666655433 3333222 223333 3344679999998877543311 111245666777
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038373 207 NGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFE 253 (475)
Q Consensus 207 ~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~ 253 (475)
..++.+--.+++.+.+.|+. +..--+.||.+|.+.++.+.-.++.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 77777777888888888875 33344567888888887766555443
No 329
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=51.32 E-value=92 Score=25.59 Aligned_cols=57 Identities=16% Similarity=0.022 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCchHHHHHHHH
Q 038373 266 EHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEA-LRNFAQIHGDVELEDRAEEL 322 (475)
Q Consensus 266 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~-li~~~~~~g~~~~a~~~~~~ 322 (475)
.+--++..++.-.|..++|.++++..+.-++-...|. ++..|++..+-++..++.+.
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456888888899999999999999865566666655 78899888876555555443
No 330
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.12 E-value=44 Score=24.94 Aligned_cols=47 Identities=9% Similarity=-0.003 Sum_probs=25.1
Q ss_pred ccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 038373 241 SAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEF 287 (475)
Q Consensus 241 ~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~ 287 (475)
....-++|...|....++.--.|+ ..+...|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666655543222222 23455666666666666666554
No 331
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.06 E-value=17 Score=30.17 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=24.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~ 239 (475)
..|.-.+|-.+|++|++.|-.||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667889999999999999974 66666654
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.83 E-value=2e+02 Score=30.32 Aligned_cols=130 Identities=13% Similarity=0.034 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373 164 ELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE 243 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g 243 (475)
..-+.+.+.+-+.|..++|+.+- ..+|. -+ .-..+.|+.+.|.++..+. -+..-|-.|-++..+.|
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---~D~d~-rF----elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---TDPDQ-RF----ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---CChhh-hh----hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcc
Confidence 35678888899999999988763 12221 11 2235689999999987764 36778999999999999
Q ss_pred CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHH---HhCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 038373 244 AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFV---ERMPFEPTVEVWEALRNFAQIHGDVELEDRAE 320 (475)
Q Consensus 244 ~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~---~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~ 320 (475)
++..|.+.|.... + |..|+-.|.-.|+-+.-..+= ++-| .+ |.-.-+|...|++ ++..
T Consensus 681 ~l~lA~EC~~~a~-d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g--~~----N~AF~~~~l~g~~---~~C~ 741 (794)
T KOG0276|consen 681 ELPLASECFLRAR-D---------LGSLLLLYTSSGNAEGLAVLASLAKKQG--KN----NLAFLAYFLSGDY---EECL 741 (794)
T ss_pred cchhHHHHHHhhc-c---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--cc----chHHHHHHHcCCH---HHHH
Confidence 9999999998766 3 456777777777755333332 2224 22 2333455668998 5666
Q ss_pred HHHhcc
Q 038373 321 ELLGDL 326 (475)
Q Consensus 321 ~~l~~~ 326 (475)
++|.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 666554
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=49.10 E-value=19 Score=20.87 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=13.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 038373 201 ISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~ 222 (475)
-.+|.+.|++++|.+.|++..+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3445566666777776666654
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.76 E-value=4e+02 Score=29.16 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 038373 211 ADGLMLFEQMRKTGPHP-----DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 211 ~~A~~l~~~M~~~g~~p-----d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 285 (475)
+..++++.|.....+-| ...-....+..|.+.|-++|-.-++..|- .++.+|.-.--+-+++++|.
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHH
Confidence 56777777776655444 11122334444555554554444444442 12333333344445555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcC
Q 038373 286 EFVERMPFEPTVEVWEALRNFAQIHG 311 (475)
Q Consensus 286 ~~~~~m~~~p~~~t~~~li~~~~~~g 311 (475)
++.++ +-|...|..||+.+...-
T Consensus 682 efvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 682 EFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHh---cCCHHHHHHHHHHhhcCc
Confidence 55554 468999999998776543
No 335
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.37 E-value=2.3e+02 Score=26.39 Aligned_cols=147 Identities=6% Similarity=0.007 Sum_probs=80.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHh
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTS--AFVKDV--ELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAA 206 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~--~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~ 206 (475)
|+.....|...|..+.|-..++..-+. .+.||. ..|.--+...-..++...|.. -|..+-.+|.+
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e-----------l~gk~sr~lVr 162 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE-----------LYGKCSRVLVR 162 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH-----------HHHHhhhHhhh
Confidence 677777777778777766666554331 334432 122222222222222222222 35555567777
Q ss_pred cCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCC--cCCHHHHHHHHHHHHhcC
Q 038373 207 NGQGADGLMLFEQMRKT----GPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKNDYGI--VPGIEHYIAIIKVLGSAG 279 (475)
Q Consensus 207 ~g~~~~A~~l~~~M~~~----g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~--~p~~~~y~~li~~~~~~g 279 (475)
..++++|-..|.+-... .-.|+. ..|...|-.+-...++..|+..++.-.+--++ .-|..+...||.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 77887766555443211 111222 23555555666677899999988874422122 12456667777776 467
Q ss_pred CHHHHHHHHH
Q 038373 280 HLIEAEEFVE 289 (475)
Q Consensus 280 ~~~~A~~~~~ 289 (475)
+.|++.++..
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 7777777654
No 336
>PHA03100 ankyrin repeat protein; Provisional
Probab=48.12 E-value=1.9e+02 Score=29.63 Aligned_cols=19 Identities=16% Similarity=0.461 Sum_probs=7.9
Q ss_pred HHHHHHHcC--CHHHHHHHHH
Q 038373 169 LIEMYGKCC--NTRLARKVFD 187 (475)
Q Consensus 169 Li~~~~k~g--~~~~A~~~f~ 187 (475)
.+...++.| +.+-+..+++
T Consensus 144 ~L~~A~~~~~~~~~iv~~Ll~ 164 (480)
T PHA03100 144 LLHLYLESNKIDLKILKLLID 164 (480)
T ss_pred HHHHHHHcCCChHHHHHHHHH
Confidence 334444444 4444443333
No 337
>PHA02875 ankyrin repeat protein; Provisional
Probab=47.68 E-value=2e+02 Score=28.71 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHcCcc
Q 038373 369 YEKMKGLNGQMREAGYV 385 (475)
Q Consensus 369 ~~~a~~l~~~M~~~G~~ 385 (475)
.++..+-+..|+...+.
T Consensus 296 ~~~C~~ei~~mk~~~i~ 312 (413)
T PHA02875 296 FEKCIIELRRIKSEKIG 312 (413)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 34455556666665444
No 338
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.09 E-value=43 Score=31.97 Aligned_cols=41 Identities=2% Similarity=-0.007 Sum_probs=30.7
Q ss_pred CCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038373 126 AGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELN 166 (475)
Q Consensus 126 p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 166 (475)
||..+ |+..|....+.||+++|+++++|.++.|+.--..||
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 55555 678888888888888888888888888865433333
No 339
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.78 E-value=2.8e+02 Score=26.93 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHhhhCCCcCC----HH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRK----TGPHPDKETFLVVFAACA-SAEAVKEGFLYFEIMKNDYGIVPG----IE 266 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~----~g~~pd~~t~~~li~~~~-~~g~~~~a~~~~~~m~~~~g~~p~----~~ 266 (475)
.|-..-.-||+-|+-+.|++.+++-.+ .|.+.|++-+.+-+.-+- ...-+.+-.+..+.+.++ |...+ ..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDWeRrNRlK 184 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCChhhhhhHH
Confidence 555666779999999999998877544 588889888877665543 333345555666666655 66554 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 267 HYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 267 ~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+|-.|-. ....++.+|-.+|-+.
T Consensus 185 vY~Gly~--msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 185 VYQGLYC--MSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHH
Confidence 5555532 2345788888888665
No 340
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.39 E-value=2.2e+02 Score=27.07 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHcCccc
Q 038373 370 EKMKGLNGQMREAGYVP 386 (475)
Q Consensus 370 ~~a~~l~~~M~~~G~~P 386 (475)
.+...+|++|...-+.|
T Consensus 285 ~kL~ql~~q~~~a~F~p 301 (309)
T PF07163_consen 285 YKLAQLFRQIWNAMFSP 301 (309)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34556777776654444
No 341
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=46.03 E-value=1.2e+02 Score=23.22 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHH
Q 038373 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADG 213 (475)
Q Consensus 148 ~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A 213 (475)
..++..+.+.|+-.+. -+. ...+...+.+.+.++++.++.++-.+|.++..++-..|+..-|
T Consensus 23 ~~v~~~L~~~gvlt~~-~~~---~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~La 84 (90)
T cd08332 23 DELLIHLLQKDILTDS-MAE---SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEHLC 84 (90)
T ss_pred HHHHHHHHHcCCCCHH-HHH---HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHHHH
Confidence 3466677777653222 222 2233446788889999999989989999999888776654444
No 342
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.94 E-value=5.2e+02 Score=29.77 Aligned_cols=186 Identities=17% Similarity=0.113 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcC--ChHHHHHHHHhccc----------------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 038373 98 LDVNLLSLCKEG--KVREAIEYMGQDAS----------------ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF 159 (475)
Q Consensus 98 ~n~li~~~~~~g--~~~~A~~l~~~~~~----------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 159 (475)
.-.+|.+|++.+ .+++|++...+... .-+-...|+..|..| +++.|..+-+.-
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtY----Dl~Lal~VAq~S----- 863 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTY----DLDLALLVAQKS----- 863 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhccc----chHHHHHHHHHh-----
Confidence 346778888888 77778777654331 001112244443333 455444443322
Q ss_pred CCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038373 160 VKDVELNNKLIEMYGK-------------CCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH 226 (475)
Q Consensus 160 ~p~~~~~~~Li~~~~k-------------~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~ 226 (475)
+.|+.-|-.+++-|-+ .+++++|..-+.++. ...|+-.++---++|.+.+|+.++ .
T Consensus 864 qkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~ 932 (1265)
T KOG1920|consen 864 QKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------K 932 (1265)
T ss_pred ccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------c
Confidence 2233333333332221 245666665555554 223444444445677777777774 5
Q ss_pred CCHHHHHHHHHHH----HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--
Q 038373 227 PDKETFLVVFAAC----ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVW-- 300 (475)
Q Consensus 227 pd~~t~~~li~~~----~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~-- 300 (475)
||...+..+..+| ...+.+++|.-+|+..- + -.--+.+|-.+|++.+|+.+-.+|....|...-
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G-k---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a 1002 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCG-K---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILA 1002 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc-c---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHH
Confidence 7777766666554 45677777776665433 1 134567788889999998888888433343331
Q ss_pred HHHHHHHHHcCCc
Q 038373 301 EALRNFAQIHGDV 313 (475)
Q Consensus 301 ~~li~~~~~~g~~ 313 (475)
..|+.-+...++.
T Consensus 1003 ~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHHHHHcccc
Confidence 4455555555555
No 343
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.61 E-value=3.9e+02 Score=28.21 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=70.6
Q ss_pred HhccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHhccc---CCHHHHHHHHH
Q 038373 138 CGNLKSIEMGKRVHELLRT-------SAFVKDVELNNKLIEMYGKCC-----NTRLARKVFDQLRK---RNLSSWHLMIS 202 (475)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~Li~~~~k~g-----~~~~A~~~f~~m~~---~~~~tyn~li~ 202 (475)
.+...+++.|...++.+.+ .| +....+-|-.+|.+-. +.+.|..+|..--+ |+....-..+.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLY 335 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3455666666666666655 44 2334555555665533 45567777764432 22221111111
Q ss_pred HHH-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--ccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcC
Q 038373 203 GYA-ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA--SAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAG 279 (475)
Q Consensus 203 ~~~-~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~--~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g 279 (475)
-.. ...+...|.++|..--..|.. +..-+..++-... -..+.+.|..++....++ | .|-..---..+..+.. +
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-c
Confidence 011 123456777777777776643 2333333222222 344667777777777644 5 2221111233333444 5
Q ss_pred CHHHHHHHHHhC
Q 038373 280 HLIEAEEFVERM 291 (475)
Q Consensus 280 ~~~~A~~~~~~m 291 (475)
+.+.+.-.+..+
T Consensus 412 ~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 412 RYDTALALYLYL 423 (552)
T ss_pred cccHHHHHHHHH
Confidence 555554444333
No 344
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.53 E-value=1.7e+02 Score=23.96 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038373 146 MGKRVHELLRTSAFVK-DVELNNKLIEMYGKCCNTRLARKVFDQ 188 (475)
Q Consensus 146 ~a~~~~~~m~~~g~~p-~~~~~~~Li~~~~k~g~~~~A~~~f~~ 188 (475)
.+.++|..|...|+.. -...|..--..+.+.|++++|.+||..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8889999998887643 456777778888888999999988864
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.20 E-value=1.2e+02 Score=29.05 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
+++.+-+.|...|.+.+|.++++...... +.+...+-.|+..|+..|+--+|.+-++.|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 35555567777788888888887777665 5667777777888888887555555555543
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=44.95 E-value=51 Score=32.00 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCC
Q 038373 202 SGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGH 280 (475)
Q Consensus 202 ~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~ 280 (475)
+-|.+.|.+++|+..|..-.. +.| |.++|..-..+|.+...+..|+.=...... .-...+.+|.|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHHH
Confidence 679999999999999976544 567 999999999999998888877654443331 12345667777654
Q ss_pred -------HHHHHHHHHhC-CCCCCH
Q 038373 281 -------LIEAEEFVERM-PFEPTV 297 (475)
Q Consensus 281 -------~~~A~~~~~~m-~~~p~~ 297 (475)
+++|.+=.+.. .++|+.
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCccc
Confidence 44444444333 456663
No 347
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.02 E-value=3.3e+02 Score=26.55 Aligned_cols=62 Identities=8% Similarity=0.034 Sum_probs=35.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcCCHHHHHHHHHHH-----HhcCCHHHHHHHHHhCC
Q 038373 231 TFLVVFAACASAEAVKEGFLYFEIMKND---YGIVPGIEHYIAIIKVL-----GSAGHLIEAEEFVERMP 292 (475)
Q Consensus 231 t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~~~~y~~li~~~-----~~~g~~~~A~~~~~~m~ 292 (475)
.+-..-.-||+.|+.+.|.+.+..-.++ .|.+.|++.|..=+..+ .-...+++|..++++=|
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 4555566678888888888777654322 46677776554333222 22233555555555543
No 348
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.81 E-value=34 Score=24.14 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 038373 269 IAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~m 291 (475)
-.+|.+|...|+.++|.++++++
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 35566666666666666666554
No 349
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.55 E-value=1e+02 Score=32.76 Aligned_cols=73 Identities=7% Similarity=-0.013 Sum_probs=41.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHH------HHHHHHHHhhhCCCcCCHHHHHH
Q 038373 199 LMISGYAANGQGADGLMLFEQMRKT--GPHPDKETFLVVFAACASAEAVKE------GFLYFEIMKNDYGIVPGIEHYIA 270 (475)
Q Consensus 199 ~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~t~~~li~~~~~~g~~~~------a~~~~~~m~~~~g~~p~~~~y~~ 270 (475)
+|..+|..+|++-.+.++++..... |-+.=.-.||..|+...+.|.++- |.+++++. -+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6777777777777777777776642 333333456666777777776542 22222222 23445566666
Q ss_pred HHHHH
Q 038373 271 IIKVL 275 (475)
Q Consensus 271 li~~~ 275 (475)
|+.+-
T Consensus 109 l~~~s 113 (1117)
T COG5108 109 LCQAS 113 (1117)
T ss_pred HHHhh
Confidence 65443
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=42.20 E-value=1.8e+02 Score=29.84 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=75.1
Q ss_pred cCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHH
Q 038373 141 LKSIEMG-KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLML 216 (475)
Q Consensus 141 ~~~~~~a-~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l 216 (475)
.|++..| .+++..+....-.|+.+..-+.| +...|+++.+...+..... ....+-.+++....+.|++++|..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 4666555 56666666554467766655554 4556888888888766543 4556778888888889999999998
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 217 FEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 217 ~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
-.-|....++-.. ........--..|-++++...|+++.
T Consensus 380 a~~~l~~eie~~e-i~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 380 AEMMLSNEIEDEE-VLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHhccccCChh-heeeecccHHHHhHHHHHHHHHHHHh
Confidence 8888877665322 22222222345677788887777765
No 351
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=42.02 E-value=43 Score=18.09 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccc
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDAS 123 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~ 123 (475)
.|..+-..+...|++++|...|++...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345555666677777777777665443
No 352
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.93 E-value=1.1e+02 Score=26.95 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhhCCCcCCH------HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 038373 245 VKEGFLYFEIMKNDYGIVPGI------EHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGD 312 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~g~~p~~------~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~ 312 (475)
++.|..+|+.+.++....-+. ..--..+-.|.+.|.+++|.+++++.--.|+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccc
Confidence 566777777776543221011 11234556788999999999999988336777766655555555444
No 353
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.35 E-value=1.1e+02 Score=23.42 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Q 038373 213 GLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEE 286 (475)
Q Consensus 213 A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~ 286 (475)
+-++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. + | |+ -|...++++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-g--~~--aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q-K--EG--WFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-C--Cc--HHHHHHHHHHHcCchhhhhc
Confidence 34455555555532 22233333333334566666666666665 3 2 22 35666666666666555543
No 354
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.31 E-value=3.9e+02 Score=26.96 Aligned_cols=159 Identities=9% Similarity=-0.093 Sum_probs=90.7
Q ss_pred CCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHhcccCCHH-------
Q 038373 126 AGYDVFSSLLD-SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG--KCCNTRLARKVFDQLRKRNLS------- 195 (475)
Q Consensus 126 p~~~t~~~ll~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~--k~g~~~~A~~~f~~m~~~~~~------- 195 (475)
|...+|-.|=. ++.-.++.++|.++-..+++.. .+..+-.++++.| -.++.+.|..-|.+-..-|..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 44444443332 3456688888887776666543 2233444444322 346777888777766532211
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC
Q 038373 196 --------SWHLMISGYAANGQGADGLMLFEQMRK---TGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG 264 (475)
Q Consensus 196 --------tyn~li~~~~~~g~~~~A~~l~~~M~~---~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 264 (475)
.|.-=-+-..++|++.+|.+.+.+-+. +.++|+...|...-....+.|+.++|..--++.. .+.|.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~s 319 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSS 319 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHH
Confidence 232223345678888888888888765 3456667777777777788888888877666554 23221
Q ss_pred HHHHHHHHH--HHHhcCCHHHHHHHHHhC
Q 038373 265 IEHYIAIIK--VLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 265 ~~~y~~li~--~~~~~g~~~~A~~~~~~m 291 (475)
.....+.. ++.--+++++|.+-|+..
T Consensus 320 -yikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 320 -YIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222 222335566666666554
No 355
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.39 E-value=1.9e+02 Score=22.92 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLRK 191 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~~ 191 (475)
|..|+..|-..|..++|.+++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66666666666666666666665543
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=39.36 E-value=4.6e+02 Score=27.28 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=110.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
.|-...-++|.-++++-++.-...+..+|...+-+...|-.++.+|... .-+.-..+|+++.+..+ -|++...-|..-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHH
Confidence 3444555677778888777777778888887777888888899988888 55667888888888764 455555566666
Q ss_pred HHHcCCHHHHHHHHHhcccC------CH---HHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcc
Q 038373 173 YGKCCNTRLARKVFDQLRKR------NL---SSWHLMISGYAANGQGADGLMLFEQMRK-TGPHPDKETFLVVFAACASA 242 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~~------~~---~tyn~li~~~~~~g~~~~A~~l~~~M~~-~g~~pd~~t~~~li~~~~~~ 242 (475)
|-+ ++.+.+...|.....+ +. ..|.-|+.-- ..+.+..+.+...... .|..--.+.+--+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 666 8888888888766432 11 1676666421 2445666666666654 35555666777777778888
Q ss_pred CCHHHHHHHHHHHh
Q 038373 243 EAVKEGFLYFEIMK 256 (475)
Q Consensus 243 g~~~~a~~~~~~m~ 256 (475)
.++.+|.+++..+.
T Consensus 219 eN~~eai~Ilk~il 232 (711)
T COG1747 219 ENWTEAIRILKHIL 232 (711)
T ss_pred cCHHHHHHHHHHHh
Confidence 88888888887655
No 357
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.33 E-value=1.9e+02 Score=28.04 Aligned_cols=104 Identities=9% Similarity=0.051 Sum_probs=53.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC--CHHHHHH--HHHHHHhcCChHHHHH
Q 038373 140 NLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR--NLSSWHL--MISGYAANGQGADGLM 215 (475)
Q Consensus 140 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~--~~~tyn~--li~~~~~~g~~~~A~~ 215 (475)
..--+.+|.+++++..+.| ..+|+ +..+...--...+.+.++ |+.+|-- |.-+--+.|+..+|.+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 3345677777777777655 22333 222222212223334444 4445532 2222335688888888
Q ss_pred HHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 216 LFEQMRKTGPHPDKET---FLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 216 l~~~M~~~g~~pd~~t---~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.|+++.++ .|=... --.||.+|.....+.+...++...-
T Consensus 297 ~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 297 IMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88776553 232222 2346777776666666655554443
No 358
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.21 E-value=3.5e+02 Score=25.80 Aligned_cols=79 Identities=19% Similarity=-0.002 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhCCC---cCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 038373 245 VKEGFLYFEIMKNDYGI---VPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEE 321 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~g~---~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 321 (475)
.++|.+.|+.......- ..+...-..++....+.|..++-..+++.....++..-...++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 34555556555532011 223333445555555555544444444444333455555556655555555544444444
Q ss_pred HH
Q 038373 322 LL 323 (475)
Q Consensus 322 ~l 323 (475)
.+
T Consensus 226 ~~ 227 (324)
T PF11838_consen 226 LL 227 (324)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=38.89 E-value=99 Score=23.12 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=29.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHHccCCHHHHHHH
Q 038373 206 ANGQGADGLMLFEQMRKTGPHP-DK-ETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~p-d~-~t~~~li~~~~~~g~~~~a~~~ 251 (475)
...+.++|+..|....+.-..| +. .++..++.+++..|+++++..+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777766543333 22 3677778888888887776654
No 360
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=38.40 E-value=71 Score=23.37 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=31.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 205 AANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 205 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
...|+.+++.+++++....|..|..+....+..+.-+.|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999988999988888888888766554
No 361
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.06 E-value=3.2e+02 Score=25.00 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=62.7
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHhcccCCHH-HHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373 166 NNKLIEMYGK--CCNTRLARKVFDQLRKRNLS-SWH-LMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241 (475)
Q Consensus 166 ~~~Li~~~~k--~g~~~~A~~~f~~m~~~~~~-tyn-~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~ 241 (475)
|..+|.+|.- .+++++|.+.+ .+|.+. +|. -+|.++...|+.+.|+.+++-+.-..-.+ ..-..++.. ..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELL---SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHh---CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HH
Confidence 4555665543 46677777666 334332 212 37777777888888888887753322222 222222333 34
Q ss_pred cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 038373 242 AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPT 296 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~ 296 (475)
.+.+.+|..+-+...++ .. ...+..++..+.....-....+.+-.+++.+.
T Consensus 153 ~~~v~EAf~~~R~~~~~--~~--~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDE--LR--RRLFEQLLEHCLEECARSGRLDELLSLPLDEE 203 (226)
T ss_pred cCCHHHHHHHHHhCchh--hh--HHHHHHHHHHHHHHhhhhhHHHHHHhCCCChH
Confidence 47788887766655532 11 23455555555543322233333444454433
No 362
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.85 E-value=3.4e+02 Score=25.21 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=31.4
Q ss_pred HhcCCHHHHHHHHHhC---CCCCCHHHHHH---HH-HHHHHc--CCchHHHHHHHHHhccCCC
Q 038373 276 GSAGHLIEAEEFVERM---PFEPTVEVWEA---LR-NFAQIH--GDVELEDRAEELLGDLDPS 329 (475)
Q Consensus 276 ~~~g~~~~A~~~~~~m---~~~p~~~t~~~---li-~~~~~~--g~~~~a~~~~~~l~~~~~~ 329 (475)
+..|+..+|.++|++. .+..+..-|.. ++ .++|.. ++.-.+.++++..+++.|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 4456777899998887 23333333433 22 233332 4444557788888877664
No 363
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.81 E-value=2.9e+02 Score=24.40 Aligned_cols=128 Identities=14% Similarity=0.098 Sum_probs=59.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHhccc----CCHH-HHHHHHH-
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN-KLIEMYGKCCNTRLARKVFDQLRK----RNLS-SWHLMIS- 202 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~Li~~~~k~g~~~~A~~~f~~m~~----~~~~-tyn~li~- 202 (475)
+|...|+ +++.+..++|+.-|..+.+.|...-.+.-- -.-......|+-..|...|+++-. |-+. ----|=.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 4444444 234455566666666666555432221111 011223455666666666666542 1111 0000111
Q ss_pred -HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 038373 203 -GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKND 258 (475)
Q Consensus 203 -~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 258 (475)
.+..+|-+++.....+.+-..|-..-...=-.|--+--+.|++..|...|..+.++
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 23456666666665555544433222223334444445667777777777666654
No 364
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=37.39 E-value=3e+02 Score=28.64 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhcccCCHH--------
Q 038373 127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC---NTRLARKVFDQLRKRNLS-------- 195 (475)
Q Consensus 127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g---~~~~A~~~f~~m~~~~~~-------- 195 (475)
|...||.+|++. .++...++..|.+.|+-.| +.+++|++-.-|-. +.+... | .|.|.
T Consensus 619 N~iIYNaVISgI-----heqmK~lmkl~PR~~iL~D-iHF~aLL~K~kKp~K~~~td~v~--Y----dPTVKsyAL~~Le 686 (782)
T PF07218_consen 619 NMIIYNAVISGI-----HEQMKNLMKLMPRKPILKD-IHFEALLNKEKKPQKITRTDYVL--Y----DPTVKSYALTELE 686 (782)
T ss_pred hhHhHHHHHHHH-----HHHHHHHHHhCCCcchhHH-HHHHHHhhhccccccccccccee--c----CchHHHHHhhhhc
Confidence 566677777654 3556666777776665333 45666666555311 111111 1 12222
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHHHHHc-------C------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 038373 196 --SWHLMISGYAANGQGADGLMLFEQMRKT-------G------PHPDKETFLVVFAACASAEAVKEGFLYFEIMKND 258 (475)
Q Consensus 196 --tyn~li~~~~~~g~~~~A~~l~~~M~~~-------g------~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 258 (475)
.-..+|++|..... .+...+..+|+-. + -.||.-.+.-||+-|- .+-..+|++|..+
T Consensus 687 R~PmvsvInsfFEaKK-K~Ls~i~aqmKLDlfSL~nedlKiP~d~~~nsKL~~kLiskYK-----~EIK~~FkEMr~d 758 (782)
T PF07218_consen 687 REPMVSVINSFFEAKK-KDLSDIMAQMKLDLFSLTNEDLKIPNDKGANSKLTAKLISKYK-----KEIKKLFKEMRDD 758 (782)
T ss_pred cchHHHHHHHHHHHHH-HHHHHHHHHHhhhHHhhccccccCCCCCCcchHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 23356667666543 2233444444321 1 1256667777777764 4566677777754
No 365
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=37.24 E-value=58 Score=21.21 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=15.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcC
Q 038373 134 LLDSCGNLKSIEMGKRVHELLRTSA 158 (475)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~m~~~g 158 (475)
|-.+|...|+.+.|++++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3455666667777777766666543
No 366
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=35.73 E-value=1.3e+02 Score=30.06 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=85.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------cCCHH--
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRT----SAFV-KDVELNNKLIEMYGKCCNTRLARKVFDQLR-------KRNLS-- 195 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~-p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~-------~~~~~-- 195 (475)
.|..|-+.|--.|+++.|...|++-.+ .|-+ .....+..|-++|.-.|+++.|.+.|+... ++.+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 467777777777899999988875432 2321 234577888899999999999998887542 33332
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRK-----TGPHPDKETFLVVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m 255 (475)
+.-+|-+.|.-..++++|+..+.+=.. ....--...|-+|-.++...|.-++|..+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455677777777788888887765322 111123446677888888888888887665443
No 367
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.62 E-value=3.3e+02 Score=24.43 Aligned_cols=126 Identities=7% Similarity=-0.056 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHhcc-cCCHHHHHHHH----
Q 038373 129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL--IEMYGKCCNTRLARKVFDQLR-KRNLSSWHLMI---- 201 (475)
Q Consensus 129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L--i~~~~k~g~~~~A~~~f~~m~-~~~~~tyn~li---- 201 (475)
..|-.++.+.- .+.. +.....+.+....-...--++.+| -..+..+|++++|..-++.-. .+.-..+..++
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34777777654 2333 333334444332212222333333 346778888888888887544 33223333333
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh
Q 038373 202 -SGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKND 258 (475)
Q Consensus 202 -~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 258 (475)
......|.+++|+.+++.....+..+ ...-.--+.+...|+-++|..-|..-.+.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 44667788888888887665443321 11222335677788888888888877743
No 368
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.21 E-value=4.2e+02 Score=25.58 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHcCCchH
Q 038373 296 TVEVWEALRNFAQIHGDVEL 315 (475)
Q Consensus 296 ~~~t~~~li~~~~~~g~~~~ 315 (475)
...+|.-|+.++|..|+.+.
T Consensus 320 hlK~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred HHHhhhHHHHHHhcCChHHH
Confidence 45578889999999998753
No 369
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.11 E-value=5.2e+02 Score=27.06 Aligned_cols=25 Identities=12% Similarity=-0.007 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHhccc
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDAS 123 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~ 123 (475)
..|+.-|.+.+++++|..++..|.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 4578899999999999999988865
No 370
>PRK11906 transcriptional regulator; Provisional
Probab=34.79 E-value=5.2e+02 Score=26.48 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=92.6
Q ss_pred HHH--HHHHHHHhcc-----CCHHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHHH---------cCCHHHHHHHHHhcc
Q 038373 129 DVF--SSLLDSCGNL-----KSIEMGKRVHELLRT-SAFVKDV-ELNNKLIEMYGK---------CCNTRLARKVFDQLR 190 (475)
Q Consensus 129 ~t~--~~ll~~~~~~-----~~~~~a~~~~~~m~~-~g~~p~~-~~~~~Li~~~~k---------~g~~~~A~~~f~~m~ 190 (475)
..| ...+.+.... ...+.|..+|.+... ..+.|+- ..|..+--++.. .....+|.++-+.-.
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 346 6677766552 246778888888872 3445553 334433333322 223455666665544
Q ss_pred c---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC--
Q 038373 191 K---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-- 264 (475)
Q Consensus 191 ~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-- 264 (475)
+ -|...-..+-.++...|+.+.|..+|++-.. +.||.. +|...-..+.-.|+.++|.+.++... .+.|.
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al---rLsP~~~ 406 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSL---QLEPRRR 406 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccCchhh
Confidence 3 3555655666656777779999999998776 456543 34333344455789999998888754 23443
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 265 -IEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 265 -~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
...-.-.|++|+..+ +++|.+++-+
T Consensus 407 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 407 KAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 333445566777655 5667776644
No 371
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=33.53 E-value=4e+02 Score=24.86 Aligned_cols=80 Identities=11% Similarity=0.007 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA----GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVKDVELNN 167 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~ 167 (475)
|-..-|+.-+. -.+.|++++|.+.|+.+...-| ..-+.-.++.++-+.++.++|....++-.+. +-.||+ -|-
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~ 110 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA 110 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence 44455665554 5678999999999887654332 3455677777888889999998888877664 334443 344
Q ss_pred HHHHHHH
Q 038373 168 KLIEMYG 174 (475)
Q Consensus 168 ~Li~~~~ 174 (475)
--|.+++
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 4444444
No 372
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=32.98 E-value=1.2e+02 Score=22.37 Aligned_cols=19 Identities=5% Similarity=0.184 Sum_probs=8.3
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 038373 169 LIEMYGKCCNTRLARKVFD 187 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~ 187 (475)
.+...+..|+++-+..+++
T Consensus 29 ~l~~A~~~~~~~~~~~Ll~ 47 (89)
T PF12796_consen 29 ALHYAAENGNLEIVKLLLE 47 (89)
T ss_dssp HHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3333444444444444444
No 373
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=32.97 E-value=3.8e+02 Score=26.23 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHHHHHHcCChHHHHHHHHhccc-----CCCCHHHHH--HHHHHHhccCCHHHHHHHHHHHHH
Q 038373 101 NLLSLCKEGKVREAIEYMGQDAS-----ASAGYDVFS--SLLDSCGNLKSIEMGKRVHELLRT 156 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~-----~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~ 156 (475)
++...-+.++.++|++.++++.. ..|+.+.|- ....++-..|++.++++++.+.++
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33334444455566665554332 115555442 222233344555555555555554
No 374
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.68 E-value=1.1e+02 Score=27.15 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHc--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038373 133 SLLDSCGNLKSIEMGKRVHELLRTS--------------AFVKDVELNNKLIEMYGKCCNTRLARKVFDQ 188 (475)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~m~~~--------------g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~ 188 (475)
+++..|-+.-++.+++++++.|-+. +..+--...|.-...|.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 375
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=31.49 E-value=23 Score=26.70 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.5
Q ss_pred cccchhHHHhhhcCceEEEecCCccccccCCcC
Q 038373 437 DCHNAIKIMSKIVGRELIVRDNKRFHHFRDGKC 469 (475)
Q Consensus 437 ~~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g~c 469 (475)
.-.+|.++..+|.+.|++..-.. -|+|++|.+
T Consensus 48 ~r~eAv~lgq~Ll~~g~I~hv~~-~~~F~d~~~ 79 (83)
T cd04449 48 TREEAVELGQELMNEGLIEHVSG-RHPFLDGFY 79 (83)
T ss_pred CHHHHHHHHHHHHHCCCEEecCC-CCCccCCCE
Confidence 34579999999999999888775 589999863
No 376
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=30.61 E-value=2.4e+02 Score=21.39 Aligned_cols=64 Identities=6% Similarity=0.103 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHH
Q 038373 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGL 214 (475)
Q Consensus 147 a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~ 214 (475)
+..+++.+.+.|+ .+..-+- ..-.+..+-++|.++++....++-.+|.+..+++-..|..+-|.
T Consensus 16 v~~ild~L~~~gv-lt~~~~e---~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La~ 79 (86)
T cd08323 16 TSYIMDHMISDGV-LTLDEEE---KVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLAL 79 (86)
T ss_pred HHHHHHHHHhcCC-CCHHHHH---HHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHHH
Confidence 4557777777774 2222222 22335667888999999888888888988888888777665553
No 377
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=30.53 E-value=3.6e+02 Score=27.92 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=59.7
Q ss_pred CCCHHH-HHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHc-CCCCCHHH
Q 038373 160 VKDVEL-NNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISG---YAANGQGADGLMLFEQMRKT-GPHPDKET 231 (475)
Q Consensus 160 ~p~~~~-~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~---~~~~g~~~~A~~l~~~M~~~-g~~pd~~t 231 (475)
.|+.+| -+.+++.+-+.|-..+|+++|..... ++++.|--||.- ....| ..-+.++++.|... | -|...
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHH
Confidence 444444 36677788888888888888876653 466777666643 11222 66677788887753 6 56666
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 232 FLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 232 ~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
|.-.+.-=...|..+.+-.++....
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHH
Confidence 6665655557777777666654433
No 378
>PRK02287 hypothetical protein; Provisional
Probab=29.67 E-value=3e+02 Score=24.02 Aligned_cols=58 Identities=16% Similarity=0.013 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCCchHHHHHHHHH
Q 038373 266 EHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEA-LRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 266 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~-li~~~~~~g~~~~a~~~~~~l 323 (475)
.+--++..++.-.|..++|.++++....-++-...|. ++..|.+..+-++..++.+.+
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~ 166 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEY 166 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 3456888888888888888888888754444444443 778888877775555554443
No 379
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=29.63 E-value=4.4e+02 Score=24.13 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHH--
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHP---DKETFL--VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHY-- 268 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p---d~~t~~--~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y-- 268 (475)
-+|.||--|.-...+.+|-+.|.. +.|+.| |..+++ .-|......|++++|.+..+....+ -+.-|...+
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 355555555544445555554432 344544 333332 3455556677777777666655432 233332111
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHh
Q 038373 269 ---IAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 269 ---~~li~~~~~~g~~~~A~~~~~~ 290 (475)
-.+|. +.|.|..++|.++++.
T Consensus 105 Lq~q~lIE-liR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIE-LIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHH-HHHhhhHHHHHHHHHH
Confidence 22332 5566777777777654
No 380
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.92 E-value=1.2e+02 Score=23.84 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=11.3
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccC
Q 038373 169 LIEMYGKCCNTRLARKVFDQLRKR 192 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~~~ 192 (475)
+|.-|...|+.++|...+.++..|
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHhcCCCHHHHHHHHHHhCCC
Confidence 344444455555555555555433
No 381
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.84 E-value=6.8e+02 Score=26.13 Aligned_cols=75 Identities=15% Similarity=0.038 Sum_probs=45.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----------------CCHHHHHHHHHHHHhcCChHHHH
Q 038373 152 ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-----------------RNLSSWHLMISGYAANGQGADGL 214 (475)
Q Consensus 152 ~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----------------~~~~tyn~li~~~~~~g~~~~A~ 214 (475)
..+.+.|+..+......++... .|++..|..++++... .+....-.|+.+.. .|+.++++
T Consensus 189 ~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l 265 (509)
T PRK14958 189 HLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLL 265 (509)
T ss_pred HHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHH
Confidence 3445668777766666555443 5889999888875421 01112333444433 46677777
Q ss_pred HHHHHHHHcCCCCCH
Q 038373 215 MLFEQMRKTGPHPDK 229 (475)
Q Consensus 215 ~l~~~M~~~g~~pd~ 229 (475)
.++++|...|..|..
T Consensus 266 ~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 266 GCVTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHHHcCCCHHH
Confidence 777777777776643
No 382
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.30 E-value=1.2e+02 Score=25.23 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=19.5
Q ss_pred chHHHHHHHHHHHHHHcCcccCC
Q 038373 366 RGEYEKMKGLNGQMREAGYVPDT 388 (475)
Q Consensus 366 ~~~~~~a~~l~~~M~~~G~~Pd~ 388 (475)
.|.-.+|-.+|+.|.+.|-.||.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc
Confidence 34456789999999999999996
No 383
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.24 E-value=1.6e+02 Score=23.15 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=11.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHH
Q 038373 133 SLLDSCGNLKSIEMGKRVHELL 154 (475)
Q Consensus 133 ~ll~~~~~~~~~~~a~~~~~~m 154 (475)
.+|.-|...++.++|.+-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444455556666665555554
No 384
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.09 E-value=2.9e+02 Score=29.60 Aligned_cols=73 Identities=8% Similarity=-0.036 Sum_probs=47.9
Q ss_pred HHHHHHHHcCChHHHHHHHHhccc--CC--CCHHHHHHHHHHHhccCCHHH------HHHHHHHHHHcCCCCCHHHHHHH
Q 038373 100 VNLLSLCKEGKVREAIEYMGQDAS--AS--AGYDVFSSLLDSCGNLKSIEM------GKRVHELLRTSAFVKDVELNNKL 169 (475)
Q Consensus 100 ~li~~~~~~g~~~~A~~l~~~~~~--~~--p~~~t~~~ll~~~~~~~~~~~------a~~~~~~m~~~g~~p~~~~~~~L 169 (475)
+|+.+|..+|++.++.++++.... .+ -=...||.-|+...+.|.++. +.++++.. -+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 788899999999999998875332 11 122347777888888887543 33333333 345577888887
Q ss_pred HHHHHH
Q 038373 170 IEMYGK 175 (475)
Q Consensus 170 i~~~~k 175 (475)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766543
No 385
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.83 E-value=2e+02 Score=19.54 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=16.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 202 SGYAANGQGADGLMLFEQMRKTGPHPDKETFL 233 (475)
Q Consensus 202 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 233 (475)
-|+.+.|++++|.+..+.+.+ +.|+..-..
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~ 38 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNRQAQ 38 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-HHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcHHHH
Confidence 456666777777666666665 455544333
No 386
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=27.80 E-value=5.5e+02 Score=24.62 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC---CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 228 DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP---GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 228 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
...+|..+.+.+.+.|.++.|...+..+.. .+... +....-.-...+...|+-++|...+++.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345777788888888888888888777763 22111 1222333445566777777777776554
No 387
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.58 E-value=1.9e+02 Score=31.30 Aligned_cols=171 Identities=15% Similarity=0.197 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHhccc-CCH---H-------HHHHHHHHHHhcCChHH
Q 038373 147 GKRVHELLRTSAFVKDVEL---NNKLIEMYGKCCNTRLARKVFDQLRK-RNL---S-------SWHLMISGYAANGQGAD 212 (475)
Q Consensus 147 a~~~~~~m~~~g~~p~~~~---~~~Li~~~~k~g~~~~A~~~f~~m~~-~~~---~-------tyn~li~~~~~~g~~~~ 212 (475)
-..++.+|++.=-.|++.+ ...|+-.|-...+++...++.+.++. ||. + .|.--++---+-|+-++
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3455677766533555544 34445556666677888888777763 332 1 23333333334577788
Q ss_pred HHHHHHHHHHc--CCCCCHHHHHH-------HHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHH---HHHHHHH------
Q 038373 213 GLMLFEQMRKT--GPHPDKETFLV-------VFAACASAEAVKEGFLYFEIMKNDYGIVPGIEH---YIAIIKV------ 274 (475)
Q Consensus 213 A~~l~~~M~~~--g~~pd~~t~~~-------li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---y~~li~~------ 274 (475)
|+...-.|.+. .+.||.+.... +-+.|-..+..+.|.+.|+..- .+.|+... +.+|+.+
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 88877777653 36777654322 2234455566677777776543 45665433 2333322
Q ss_pred ---------------HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 275 ---------------LGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 275 ---------------~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
++|.|.+++-.+++ |+-+| +.+-.-..+...|.+|.+.|.++++-.
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YW-------dV~~y---~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYW-------DVATY---FEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHH-------hHHHh---hhhhhhccCHHHHHHHHHHHhccCCce
Confidence 23333333333322 22222 333344566667778888887777654
No 388
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=27.36 E-value=31 Score=26.16 Aligned_cols=40 Identities=23% Similarity=0.453 Sum_probs=29.5
Q ss_pred eeccccccccc---cchhHHHhhhcCceEEEecCCccccccCCc
Q 038373 428 IIKNLRICGDC---HNAIKIMSKIVGRELIVRDNKRFHHFRDGK 468 (475)
Q Consensus 428 ii~~~~~~g~~---~~A~~~~~~m~~~~i~~~d~~~~~~~~~g~ 468 (475)
+|+.+...|++ ++|.++..++.+.|++..-... |+|.|+.
T Consensus 38 lVdWL~~~~~~~sR~eAv~lgq~Ll~~gii~HV~~~-h~F~D~~ 80 (85)
T cd04441 38 FIDWLLQEGEAESRREAVQLCRRLLEHGIIQHVSNK-HHFFDSN 80 (85)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCEEecCCC-CCccCCC
Confidence 44444444543 5699999999999988777655 8999985
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.35 E-value=7.3e+02 Score=25.92 Aligned_cols=176 Identities=10% Similarity=0.035 Sum_probs=124.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMIS 202 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~ 202 (475)
.|.....++|..++......-+..+-.+|...| -+-..|-.++.+|... .-++-..+++++.+- |++--.-|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 566678889999999988999999999999876 4667888999999988 556667777766543 5554455555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHP--D---KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS 277 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~p--d---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~ 277 (475)
-|-+ ++.+.+..+|......=+.- + ...|.-|+.-- ..+.+....+...+..+.|...-.+.|--+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 88888888888876542210 1 12455554422 246677777777777777777777888888888999
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 038373 278 AGHLIEAEEFVERM--PFEPTVEVWEALRNFA 307 (475)
Q Consensus 278 ~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~ 307 (475)
..++.+|.+++..+ --+.|+-.-..+|..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 99999999999977 1234554445555544
No 390
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.16 E-value=1.8e+02 Score=20.78 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373 193 NLSSWHLMISGYAANGQGADGLMLFEQMRKTGP 225 (475)
Q Consensus 193 ~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~ 225 (475)
....+|-|+..+++..-.++++..+.+....|.
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~ 39 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS 39 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334445555555554445555555555555443
No 391
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=26.79 E-value=37 Score=26.25 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=30.3
Q ss_pred eecccccccc---ccchhHHHhhhcCceEEEecCCccccccCCc
Q 038373 428 IIKNLRICGD---CHNAIKIMSKIVGRELIVRDNKRFHHFRDGK 468 (475)
Q Consensus 428 ii~~~~~~g~---~~~A~~~~~~m~~~~i~~~d~~~~~~~~~g~ 468 (475)
+++.|...|+ -++|..+-..+.+.||+-.-... |+|.||.
T Consensus 43 lVdWLi~~g~~~tR~eAv~~gq~Ll~~gii~HV~~~-h~F~D~~ 85 (93)
T cd04440 43 LVDWLLAQGDCRTREEAVILGVGLCNNGFMHHVLEK-SEFKDEP 85 (93)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCEEecCCC-cCcCCcC
Confidence 4444544444 45699999999999999888755 8999985
No 392
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.69 E-value=4.9e+02 Score=24.74 Aligned_cols=112 Identities=10% Similarity=0.060 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCC
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE-TFLVVFAACASAEA 244 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~~~~~g~ 244 (475)
.-.++..+-|..++.+..+.+..|+ .+..-...|..+...|++.+|+++..+..+.=-.-..+ .+..|- ..
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~------~~ 172 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLS------SQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHh------HH
Confidence 3445666777777777777777663 45555667788889999999999998876521000111 111111 11
Q ss_pred HHHHHH--------HHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038373 245 VKEGFL--------YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVE 289 (475)
Q Consensus 245 ~~~a~~--------~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 289 (475)
+++-.. .|..+. ..-|...|..++++|.--|+...+.+-+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~----~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVC----QDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 222222 233333 13467789999999999998777664443
No 393
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=26.55 E-value=6.5e+02 Score=25.04 Aligned_cols=18 Identities=6% Similarity=0.069 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 038373 267 HYIAIIKVLGSAGHLIEA 284 (475)
Q Consensus 267 ~y~~li~~~~~~g~~~~A 284 (475)
+|..|=..|.+-.+.++|
T Consensus 164 vcv~Lgslf~~l~D~~Ka 181 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKA 181 (518)
T ss_pred hhhhHHHHHHHHHhhhHH
Confidence 344444555555554443
No 394
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=26.47 E-value=2.1e+02 Score=23.67 Aligned_cols=43 Identities=7% Similarity=0.125 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 148 KRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 148 ~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
.+-++......+.|+..+.-+-+.++-|.+++..|.++|+.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444445556666666666666666666666666666555
No 395
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.46 E-value=4e+02 Score=24.64 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=23.1
Q ss_pred HHHHccCCHHHHHHHHHHHhhhC---CC-cCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038373 237 AACASAEAVKEGFLYFEIMKNDY---GI-VPGIEHYIAIIKVLGSAGHLIEAEEF 287 (475)
Q Consensus 237 ~~~~~~g~~~~a~~~~~~m~~~~---g~-~p~~~~y~~li~~~~~~g~~~~A~~~ 287 (475)
.-|.+.|++++|.++|+.+...+ |+ .+...+-..|..++.+.|+.++...+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445555555555555443221 21 22233344455555555555554443
No 396
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=26.44 E-value=5.6e+02 Score=26.56 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 193 NLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 193 ~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
|+..|..-|.-+-+.+.+.+.-.+|.+|..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~ 133 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLA 133 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 555555555443344445555555555544
No 397
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.06 E-value=1e+02 Score=24.74 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=31.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373 157 SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGP 225 (475)
Q Consensus 157 ~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~ 225 (475)
+|..|+ +|+-+-+|...++|+++.+.|.+++-++ .+.|.+|-..+.+.|+
T Consensus 61 sGy~Pt------ViD~lrRC~T~EEALEVInylek~GEIt-------------~e~A~eLr~~L~~kGv 110 (128)
T PF09868_consen 61 SGYNPT------VIDYLRRCKTDEEALEVINYLEKRGEIT-------------PEEAKELRSILVKKGV 110 (128)
T ss_pred cCCCCh------HHHHHHHhCcHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHhhH
Confidence 355554 4677788888888888888776554332 2445555555555553
No 398
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=26.01 E-value=2.8e+02 Score=28.23 Aligned_cols=77 Identities=5% Similarity=0.005 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh
Q 038373 198 HLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS 277 (475)
Q Consensus 198 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~ 277 (475)
..|+.-|...|++.+|....+++.-- +---.+.+-+++.+.-+.|+-.....++++.-.. ..+|-|.|-.+|.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s-----glIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS-----GLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CceeHHHhhhhhhh
Confidence 45778899999999999998886310 1114678889999999999877667777666533 45677888888887
Q ss_pred cCC
Q 038373 278 AGH 280 (475)
Q Consensus 278 ~g~ 280 (475)
..+
T Consensus 587 V~d 589 (645)
T KOG0403|consen 587 VYD 589 (645)
T ss_pred hhc
Confidence 654
No 399
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.88 E-value=2.1e+02 Score=20.44 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
|+...++-++..+++...++.+...+.+..+.|. -+..+|---+..++|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445567777777777777777777777777773 455555555555554
No 400
>PRK09687 putative lyase; Provisional
Probab=25.67 E-value=5.8e+02 Score=24.16 Aligned_cols=203 Identities=12% Similarity=0.031 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHHcCCh----HHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHHcCCCCCHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKV----REAIEYMGQDASASAGYDVFSSLLDSCGNLKSIE--MGKRVHELLRTSAFVKDVELN 166 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~----~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~ 166 (475)
+|...=-..+.++++-|.. ++++.++..+....|+..+-...+.+++..+.-. ...++...+...-..++..+-
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR 145 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVR 145 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHH
Confidence 4444444455566666653 3566666555333466666666666665553211 011122222222223455666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038373 167 NKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQ-GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAV 245 (475)
Q Consensus 167 ~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~-~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~ 245 (475)
-..+.++++.|+-+....+..-+..+|...-...+.++.+.+. ..++...+-.+.. .+|...-...+.++++.|+-
T Consensus 146 ~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~ 222 (280)
T PRK09687 146 FAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK 222 (280)
T ss_pred HHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh
Confidence 6777777777765444444445555555544555555555431 3456666655553 34666667777777777774
Q ss_pred HHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 038373 246 KEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNF 306 (475)
Q Consensus 246 ~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~ 306 (475)
.+...+-...+. + + ..-..+.++++-|.- +|...+.++ .-.||...-...+.+
T Consensus 223 -~av~~Li~~L~~-~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 223 -RVLSVLIKELKK-G---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred -hHHHHHHHHHcC-C---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHH
Confidence 444444333322 2 2 123566666766664 455555555 223454444443333
No 401
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.38 E-value=4.7e+02 Score=24.89 Aligned_cols=107 Identities=7% Similarity=0.025 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh
Q 038373 198 HLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS 277 (475)
Q Consensus 198 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~ 277 (475)
-.++.-+-+.++..+.++.+..|.. ...-...|..+...|++..|.++..+..+- .. ....|+++=+.-.+
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~-~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL--LE-ELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HH-hcccchHHHHHhHH
Confidence 3444555555555555555555542 223334455556677777777776655421 11 11222222222111
Q ss_pred cCCHH-----HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 038373 278 AGHLI-----EAEEFVERMPFEPTVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 278 ~g~~~-----~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~ 313 (475)
-.+.. .-...|.++-..=|...|..++.||..-|+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh
Confidence 11111 1122333442234777788888888777765
No 402
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.34 E-value=2.2e+02 Score=20.93 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
+.+.|.+++..++... +.++..||++...+.|.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3455666666654333 45566677766655554
No 403
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.24 E-value=2.5e+02 Score=22.58 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=23.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173 (475)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~ 173 (475)
+|+-+-+....++|+++.+.|.+.| ..+...-+-|-.-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4444555566777777777777777 55555555444433
No 404
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.11 E-value=4.1e+02 Score=24.08 Aligned_cols=85 Identities=9% Similarity=-0.065 Sum_probs=46.4
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHH----HHHHHhcCC
Q 038373 138 CGNLKSIEMGKRVHELLRTSAFVK----DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLM----ISGYAANGQ 209 (475)
Q Consensus 138 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~l----i~~~~~~g~ 209 (475)
+.+.|++++|..-|.+.++.--.. -.+.|..--.++.|.+..+.|..--....+-+. ||+-- ..+|-+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhhhh
Confidence 345567777777776666542111 123344444566666666666554333322221 23222 135666777
Q ss_pred hHHHHHHHHHHHHc
Q 038373 210 GADGLMLFEQMRKT 223 (475)
Q Consensus 210 ~~~A~~l~~~M~~~ 223 (475)
+++|++=|+...+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887764
No 405
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.99 E-value=5.1e+02 Score=23.27 Aligned_cols=124 Identities=10% Similarity=0.046 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccC-CCCHH-HHHH--HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASA-SAGYD-VFSS--LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI- 170 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~-~p~~~-t~~~--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li- 170 (475)
..|-.+|...- .+.. +......++... +-+.+ ++.+ +-+.+...+++++|..-++..... |.-..+.+|+
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~ 129 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAA 129 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHH
Confidence 45666676653 3333 333333332221 12222 2333 334678889999999988877653 3333444443
Q ss_pred ----HHHHHcCCHHHHHHHHHhcccCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHHcC
Q 038373 171 ----EMYGKCCNTRLARKVFDQLRKRNLSSWHLM--ISGYAANGQGADGLMLFEQMRKTG 224 (475)
Q Consensus 171 ----~~~~k~g~~~~A~~~f~~m~~~~~~tyn~l--i~~~~~~g~~~~A~~l~~~M~~~g 224 (475)
......|.+|+|...++...+++-..--.- -..+...|+-++|..-|.+-.+.+
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 356678999999999999988875542222 355889999999999999988775
No 406
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.33 E-value=3.3e+02 Score=20.80 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
...+|..-++.-..... ++. ++|+.....|+.-|..+|-.+++..--+=..+...++++.|.
T Consensus 9 ~~~~~k~~~~rk~~Ls~-eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLSA-EEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred hHHHHHHHHHHHhccCH-HHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34445555544333222 222 777777788888888888888887776666777777777764
No 407
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=24.17 E-value=7.6e+02 Score=24.98 Aligned_cols=102 Identities=10% Similarity=-0.014 Sum_probs=52.8
Q ss_pred HHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 038373 101 NLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTR 180 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~ 180 (475)
-|+++...| ..+++.+.......++...+.....++....+......+.+.+. .++..+-.....++++.+..+
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~~ 117 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGRQ 117 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCchH
Confidence 367777777 55666655444322344444444444433332222333333332 345556677777777777666
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhcC
Q 038373 181 LARKVFDQLRKRNLSSWHLMISGYAANG 208 (475)
Q Consensus 181 ~A~~~f~~m~~~~~~tyn~li~~~~~~g 208 (475)
-...+......++...--+.+.++...+
T Consensus 118 a~~~L~~~L~~~~p~vR~aal~al~~r~ 145 (410)
T TIGR02270 118 AEPWLEPLLAASEPPGRAIGLAALGAHR 145 (410)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhc
Confidence 6666655555555444444445555443
No 408
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=24.08 E-value=6.5e+02 Score=24.22 Aligned_cols=41 Identities=10% Similarity=-0.013 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038373 145 EMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD 187 (475)
Q Consensus 145 ~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~ 187 (475)
.+|.++|..+.++. --.++-+-+|.++-..-+..+|...|.
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHH
Confidence 45666666665542 112334445555555555555554443
No 409
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.82 E-value=1e+03 Score=26.51 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=85.9
Q ss_pred HHHHcCChHHHHHHHHhcccCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 038373 104 SLCKEGKVREAIEYMGQDASASAGYD--VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRL 181 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~ 181 (475)
.|.+.|++++|++.-+.- |+.. ++..--..|.+.+++..|-+++.++.+. +-.+.-=|....+-+
T Consensus 367 ~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~--------FEEVaLKFl~~~~~~- 433 (911)
T KOG2034|consen 367 TYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETLSS--------FEEVALKFLEINQER- 433 (911)
T ss_pred HHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--------HHHHHHHHHhcCCHH-
Confidence 577789999998875432 3332 1222223456667888888888888432 111111122222222
Q ss_pred HHHHH-----Hhcc-----cCC-HHHHHH--HHHHHHhcC-ChHHHHHHHHH--------HHH-cCCCCCHHHHHHHHHH
Q 038373 182 ARKVF-----DQLR-----KRN-LSSWHL--MISGYAANG-QGADGLMLFEQ--------MRK-TGPHPDKETFLVVFAA 238 (475)
Q Consensus 182 A~~~f-----~~m~-----~~~-~~tyn~--li~~~~~~g-~~~~A~~l~~~--------M~~-~g~~pd~~t~~~li~~ 238 (475)
+.+.| +..+ +.| .++|-+ .+.-+..-. ..+++.+-++. +.. .-..-+...+-++..-
T Consensus 434 ~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l 513 (911)
T KOG2034|consen 434 ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQL 513 (911)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHH
Confidence 22222 1111 123 344421 111111111 22333333322 111 1112233344455556
Q ss_pred HHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 239 CASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 239 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+...|+.++...+-.-|. + |..+|.-++..|.+++|++++..-
T Consensus 514 ~~~~~~~e~ll~fA~l~~-d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 514 LASHGRQEELLQFANLIK-D---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHccCHHHHHHHHHHHH-H---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 667788888777666665 3 788999999999999999988764
No 410
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.49 E-value=48 Score=19.97 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=15.4
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHH
Q 038373 280 HLIEAEEFVERM-PFEPTVEVWE 301 (475)
Q Consensus 280 ~~~~A~~~~~~m-~~~p~~~t~~ 301 (475)
.++.|..+|++. .+.|++.+|-
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHH
Confidence 467788888777 5567777764
No 411
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=23.41 E-value=7.1e+02 Score=24.43 Aligned_cols=80 Identities=6% Similarity=0.072 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc-------cCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHH-HH
Q 038373 168 KLIEMYGKCCNTRLARKVFDQLR-------KRNLSSW--HLMISGYAANGQGADGLMLFEQMRK-----TGPHPDKE-TF 232 (475)
Q Consensus 168 ~Li~~~~k~g~~~~A~~~f~~m~-------~~~~~ty--n~li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~-t~ 232 (475)
.++...-+.++-++|.+.++++. +||.+.| +.+...+...|+..++.+++++.+. .|+.|++. .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 34445555667888888888775 4666655 4455566678888888888888777 67877665 34
Q ss_pred HHHHHHH-HccCCHHH
Q 038373 233 LVVFAAC-ASAEAVKE 247 (475)
Q Consensus 233 ~~li~~~-~~~g~~~~ 247 (475)
..+-+-| -..|++..
T Consensus 160 Y~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 4444433 33444443
No 412
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.26 E-value=2.4e+02 Score=21.14 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=12.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcC
Q 038373 135 LDSCGNLKSIEMGKRVHELLRTSA 158 (475)
Q Consensus 135 l~~~~~~~~~~~a~~~~~~m~~~g 158 (475)
++.+.+..-.++|.++++.|.+.|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 333444444555555555555555
No 413
>PRK10292 hypothetical protein; Provisional
Probab=23.04 E-value=2.8e+02 Score=19.67 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=20.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373 219 QMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 219 ~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m 255 (475)
+|...|.+|+.+....+|..-...++.+........|
T Consensus 24 ~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaM 60 (69)
T PRK10292 24 EMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAM 60 (69)
T ss_pred HHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHH
Confidence 4666777777777777775444444444333333333
No 414
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.01 E-value=2e+02 Score=22.74 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373 208 GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE 243 (475)
Q Consensus 208 g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g 243 (475)
+..-.|.++++++.+.+..++..|.--.|+.+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333344444444444444444444433444444433
No 415
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=22.90 E-value=7e+02 Score=25.77 Aligned_cols=121 Identities=16% Similarity=0.059 Sum_probs=78.5
Q ss_pred HHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHH
Q 038373 204 YAANGQGADGL-MLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLI 282 (475)
Q Consensus 204 ~~~~g~~~~A~-~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~ 282 (475)
-...|+...|. ++|.-+....-.|+.+-.-+.| ....|+++.+.+.+..... -+.....+-.+++...-+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 34467776654 4666666666677777666655 3578999999988877762 34445667788999999999999
Q ss_pred HHHHHHHhC-C--CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCC
Q 038373 283 EAEEFVERM-P--FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPS 329 (475)
Q Consensus 283 ~A~~~~~~m-~--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~ 329 (475)
+|..+-+.| + ++ |......-.......|.++++..-|+.+..+.|.
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 999888877 2 22 2222222222233456676666667666665544
No 416
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=22.88 E-value=39 Score=26.44 Aligned_cols=20 Identities=30% Similarity=0.793 Sum_probs=14.0
Q ss_pred EEecCCccccccCCcCCCCCC
Q 038373 454 IVRDNKRFHHFRDGKCSCGDY 474 (475)
Q Consensus 454 ~~~d~~~~~~~~~g~cs~~~~ 474 (475)
.+...+-| .++.|+|||.+|
T Consensus 38 yvG~~rdY-Il~~gfCSCp~~ 57 (117)
T COG5431 38 YVGKERDY-ILEGGFCSCPDF 57 (117)
T ss_pred EEccccce-EEEcCcccCHHH
Confidence 34444444 778889999987
No 417
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.86 E-value=2.7e+02 Score=25.28 Aligned_cols=80 Identities=6% Similarity=0.167 Sum_probs=54.3
Q ss_pred hHHHHHHHHhcccC--------C-CCHHHHHHHHHHHhccC---------CHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038373 111 VREAIEYMGQDASA--------S-AGYDVFSSLLDSCGNLK---------SIEMGKRVHELLRTSAFVK-DVELNNKLIE 171 (475)
Q Consensus 111 ~~~A~~l~~~~~~~--------~-p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~m~~~g~~p-~~~~~~~Li~ 171 (475)
++.|..++.+|... | -...-|-.+-.+|++.| +++--.++++..++.|++. =..+|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 45666666665431 1 23334778888888875 4566677888888888752 2357888887
Q ss_pred HHHHcCCHHHHHHHHHhcc
Q 038373 172 MYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~ 190 (475)
-=.-.-+.++..++|..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 6666667888888887765
No 418
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=22.73 E-value=1.2e+02 Score=16.90 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=5.6
Q ss_pred CHHHHHHHHHhC
Q 038373 280 HLIEAEEFVERM 291 (475)
Q Consensus 280 ~~~~A~~~~~~m 291 (475)
+.+.|.++|+++
T Consensus 2 ~~~~~r~i~e~~ 13 (33)
T smart00386 2 DIERARKIYERA 13 (33)
T ss_pred cHHHHHHHHHHH
Confidence 344444444444
No 419
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.25 E-value=5.6e+02 Score=22.77 Aligned_cols=12 Identities=17% Similarity=0.204 Sum_probs=7.7
Q ss_pred HHHHHHHHHhcc
Q 038373 179 TRLARKVFDQLR 190 (475)
Q Consensus 179 ~~~A~~~f~~m~ 190 (475)
++.|..+++.++
T Consensus 85 LESAl~v~~~I~ 96 (200)
T cd00280 85 LESALMVLESIE 96 (200)
T ss_pred HHHHHHHHHHHH
Confidence 566666666654
No 420
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.61 E-value=8.3e+02 Score=24.54 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHH
Q 038373 208 GQGADGLMLFEQMRKTGPHPDKET 231 (475)
Q Consensus 208 g~~~~A~~l~~~M~~~g~~pd~~t 231 (475)
++.+.|+..+..|.+.|..|..+.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 556666666666666665554433
No 421
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.45 E-value=3.9e+02 Score=23.10 Aligned_cols=62 Identities=5% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 038373 220 MRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIE 283 (475)
Q Consensus 220 M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~ 283 (475)
++..|++++..-. .++..+...+..-.|.++++.+.++ +..++..|----|+.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEEE
Confidence 4566777665544 3444444445566788899988854 666665555555688888888754
No 422
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.24 E-value=9.8e+02 Score=25.23 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH-HHHcCCHHHHHHHHHhccc-------C-CHHHHHHHHHHHHhcC----
Q 038373 143 SIEMGKRVHELLRTSAFV-KDVELNNKLIEM-YGKCCNTRLARKVFDQLRK-------R-NLSSWHLMISGYAANG---- 208 (475)
Q Consensus 143 ~~~~a~~~~~~m~~~g~~-p~~~~~~~Li~~-~~k~g~~~~A~~~f~~m~~-------~-~~~tyn~li~~~~~~g---- 208 (475)
+...+.++++...+.|.. +-...-.....+ ++...+.+.|...|...-+ . +....+-+-..|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 456677777777776631 111122222333 5567789999999987744 2 3345666666677643
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHH--hcCCHHHH
Q 038373 209 -QGADGLMLFEQMRKTGPHPDKETFLVVFAACAS-AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLG--SAGHLIEA 284 (475)
Q Consensus 209 -~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~--~~g~~~~A 284 (475)
+.+.|+.++.+-.+.|. ||...+...+.-... ..+...|.++|..... .|..+ ..-+-+++...+ -..+.+.|
T Consensus 307 ~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~~~-A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGHIL-AIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCChH-HHHHHHHHHHhCCCcCCCHHHH
Confidence 56779999988887774 566665554444433 3567899999988874 36542 322333333222 34467778
Q ss_pred HHHHHhC
Q 038373 285 EEFVERM 291 (475)
Q Consensus 285 ~~~~~~m 291 (475)
..++.+.
T Consensus 384 ~~~~k~a 390 (552)
T KOG1550|consen 384 FAYYKKA 390 (552)
T ss_pred HHHHHHH
Confidence 8777776
No 423
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.24 E-value=1.2e+03 Score=29.48 Aligned_cols=115 Identities=10% Similarity=0.093 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHh----cccCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373 168 KLIEMYGKCCNTRLARKVFDQ----LRKRNL--SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241 (475)
Q Consensus 168 ~Li~~~~k~g~~~~A~~~f~~----m~~~~~--~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~ 241 (475)
+|-.+--+|+.+..|...++. +++.+. .-|-.+...|+.-+++|+...+...-.. .| ....-|--...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 444466678889999988888 333322 2455555688888888877766653111 12 12233445567
Q ss_pred cCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 242 AEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.|++..|...|+.+. +..|+ ..+++-++...-..|.++.+.-..+..
T Consensus 1462 ~g~~~da~~Cye~~~---q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLI---QKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred hccHHHHHHHHHHhh---cCCCccccchhhHHHhhhcccchhHHHhhhcch
Confidence 788888888888887 55666 556766665555566666555554444
No 424
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.23 E-value=7.1e+02 Score=23.60 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 038373 210 GADGLMLFEQMRKTGP----HPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 210 ~~~A~~l~~~M~~~g~----~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 285 (475)
.++|.++|++....+. ..+.-.-..++....+.|+.++-..+++.... ..+......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Confidence 3667777777776422 33444555566666666766555555554442 234555677777777777776666
Q ss_pred HHHHhC
Q 038373 286 EFVERM 291 (475)
Q Consensus 286 ~~~~~m 291 (475)
++++..
T Consensus 222 ~~l~~~ 227 (324)
T PF11838_consen 222 RLLDLL 227 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 425
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=21.12 E-value=8.7e+02 Score=26.57 Aligned_cols=81 Identities=14% Similarity=0.009 Sum_probs=50.8
Q ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----------------CCHHHHHHHHHHHHh
Q 038373 145 EMGKRVHELL-RTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-----------------RNLSSWHLMISGYAA 206 (475)
Q Consensus 145 ~~a~~~~~~m-~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----------------~~~~tyn~li~~~~~ 206 (475)
++..+.+..+ .+.|+.-+......|+... .|++..|..++++... .+......|+.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 3334444433 4557777777666666544 4888888888876431 111234445555544
Q ss_pred cCChHHHHHHHHHHHHcCCCCC
Q 038373 207 NGQGADGLMLFEQMRKTGPHPD 228 (475)
Q Consensus 207 ~g~~~~A~~l~~~M~~~g~~pd 228 (475)
++..+++.++++|...|+.+.
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHH
Confidence 778888888888888887654
No 426
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=20.84 E-value=7.6e+02 Score=23.77 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=20.8
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCc
Q 038373 282 IEAEEFVERM-------PFEPTVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 282 ~~A~~~~~~m-------~~~p~~~t~~~li~~~~~~g~~ 313 (475)
+.|.++++.+ |-.|..+.-.++--++..+|..
T Consensus 238 ~~A~~i~~~a~~~~l~~Gr~P~sIAAAaIYlA~~~~g~~ 276 (310)
T PRK00423 238 KKAIEILQKAKEKGLTSGKGPTGLAAAAIYIASLLLGER 276 (310)
T ss_pred HHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHhCCC
Confidence 4566777666 5567777766666666666654
No 427
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=20.77 E-value=61 Score=22.33 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCcccCCccccccccHHHH
Q 038373 369 YEKMKGLNGQMREAGYVPDTRYVLHDIDEEAK 400 (475)
Q Consensus 369 ~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~~~~ 400 (475)
-++++++|+.|-.+.+-|.+..|+-.+..+..
T Consensus 8 ~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 8 HEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred CHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 35789999999999999999999988876654
No 428
>PHA02878 ankyrin repeat protein; Provisional
Probab=20.55 E-value=9.2e+02 Score=24.62 Aligned_cols=168 Identities=7% Similarity=-0.055 Sum_probs=79.6
Q ss_pred HHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 038373 103 LSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRL 181 (475)
Q Consensus 103 ~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~ 181 (475)
..-++.|+.+-+..+++...... .|..-.+ .|...+..|+.+.+..+++....... ...++. +...+..|+.+-
T Consensus 42 h~A~~~g~~e~vk~Ll~~gadvn~~d~~g~T-pLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~-l~~a~~~~~~ei 116 (477)
T PHA02878 42 HQAVEARNLDVVKSLLTRGHNVNQPDHRDLT-PLHIICKEPNKLGMKEMIRSINKCSV---FYTLVA-IKDAFNNRNVEI 116 (477)
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHCccHhHHHHHHHHHhcccc---ccchhh-HHHHHHcCCHHH
Confidence 34467788877777777653311 2222222 33334566777666666655432221 122333 334455677777
Q ss_pred HHHHHHhccc----CCHHHHHHHHHHHHhcCChHHH--HHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHHHHHHH
Q 038373 182 ARKVFDQLRK----RNLSSWHLMISGYAANGQGADG--LMLFEQMRKTGPHPDKET---FLVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 182 A~~~f~~m~~----~~~~tyn~li~~~~~~g~~~~A--~~l~~~M~~~g~~pd~~t---~~~li~~~~~~g~~~~a~~~~ 252 (475)
+..++..-.. .+... ..... .... .++.+.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 117 ~~~Ll~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll 188 (477)
T PHA02878 117 FKIILTNRYKNIQTIDLVY-------IDKKS-KDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL 188 (477)
T ss_pred HHHHHhCcccCcccCcHHH-------Hhhcc-chhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence 7666654211 11111 01100 1111 235666667777666543 224455556667665544443
Q ss_pred HHHhhhCCCcCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 038373 253 EIMKNDYGIVPGIEH--YIAIIKVLGSAGHLIEAEEFV 288 (475)
Q Consensus 253 ~~m~~~~g~~p~~~~--y~~li~~~~~~g~~~~A~~~~ 288 (475)
+ .|..++... ..+.+...++.|+.+-...++
T Consensus 189 ~-----~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll 221 (477)
T PHA02878 189 S-----YGANVNIPDKTNNSPLHHAVKHYNKPIVHILL 221 (477)
T ss_pred H-----CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 2 355544321 123344455666665444444
No 429
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=20.37 E-value=3.7e+02 Score=27.00 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHH--H--HHHhcCChHHHHHHHHHHH
Q 038373 149 RVHELLRTSAFVKDVELN---NKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMI--S--GYAANGQGADGLMLFEQMR 221 (475)
Q Consensus 149 ~~~~~m~~~g~~p~~~~~---~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li--~--~~~~~g~~~~A~~l~~~M~ 221 (475)
-+++.+.+.|+.|++++. .+++.++.-.+..++-.++++... -|...+...- . ++...+..+.-...++...
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l 178 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-IDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQRLL 178 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-hhhhhhhhhccccccccccccccchHHHHHHHHH
Confidence 466777889999988654 466666666677777777776421 1111111100 0 1111122223334444555
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 038373 222 KTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWE 301 (475)
Q Consensus 222 ~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~ 301 (475)
+.|...|...+--.+..+...-.++||.+-- |...++....+-. . ..-.+++..- .||+..|.
T Consensus 179 ~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rT-------griLnItv~~~~~-----~----~~p~LLNylT-aPnVlIws 241 (391)
T cd07229 179 REGYFLDVKVLEEFVRANLGDLTFEEAYART-------GRVLNITVAPSAV-----S----GSPNLLNYLT-APNVLIWS 241 (391)
T ss_pred cCCCcccHHHHHHHHHHHcCCCcHHHHHHhh-------CCEEEEEEECCCC-----C----CCCeeeecCC-CCCchHHH
Confidence 5666666666655555544444444444321 2211111110000 0 1113444443 58888888
Q ss_pred HHHHHHHHcCCc
Q 038373 302 ALRNFAQIHGDV 313 (475)
Q Consensus 302 ~li~~~~~~g~~ 313 (475)
++...++.-|-+
T Consensus 242 Av~aS~a~p~~~ 253 (391)
T cd07229 242 AALASNASSAAL 253 (391)
T ss_pred HHHHHcCCcccc
Confidence 887777665543
No 430
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.13 E-value=7.3e+02 Score=23.29 Aligned_cols=149 Identities=10% Similarity=0.044 Sum_probs=87.4
Q ss_pred HHcCChHHHHHHHHhccc----CCCCHH------HHHHHHHHHhccCCHHHHHHHHHHHHHc--------CCCCCH----
Q 038373 106 CKEGKVREAIEYMGQDAS----ASAGYD------VFSSLLDSCGNLKSIEMGKRVHELLRTS--------AFVKDV---- 163 (475)
Q Consensus 106 ~~~g~~~~A~~l~~~~~~----~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~---- 163 (475)
.+.|+.+.|..++.+... ..|+.. .||.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467899999999876332 124332 3565555555543776666665544332 223333
Q ss_pred -HHHHHHHHHHHHcCCHH---HHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 164 -ELNNKLIEMYGKCCNTR---LARKVFDQLRK--RN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVF 236 (475)
Q Consensus 164 -~~~~~Li~~~~k~g~~~---~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li 236 (475)
.+...|+.+|...+..+ +|.++++.+.. ++ ...|-.=|..+.+.++.+++.+.+.+|...-.. ....|..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 56778888888887644 56666666642 33 345545566666688999999999999876321 233444444
Q ss_pred HHH---HccCCHHHHHHHHHHHh
Q 038373 237 AAC---ASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 237 ~~~---~~~g~~~~a~~~~~~m~ 256 (475)
..+ ..... ..|...++.+.
T Consensus 163 ~~i~~l~~~~~-~~a~~~ld~~l 184 (278)
T PF08631_consen 163 HHIKQLAEKSP-ELAAFCLDYLL 184 (278)
T ss_pred HHHHHHHhhCc-HHHHHHHHHHH
Confidence 444 44433 34444444444
No 431
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=20.06 E-value=1e+03 Score=24.99 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=38.7
Q ss_pred CHHHHHHHHHhccc---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373 178 NTRLARKVFDQLRK---------RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241 (475)
Q Consensus 178 ~~~~A~~~f~~m~~---------~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~ 241 (475)
++-+|.++++.+.+ +|+..||++|++- .++...++.-|.+.|+- ..+-|++|+.-.-+
T Consensus 595 nI~~a~~my~~i~e~~RlyssCfKN~iIYNaVISgI-----heqmK~lmkl~PR~~iL-~DiHF~aLL~K~kK 661 (782)
T PF07218_consen 595 NIYEALQMYSYIAEYIRLYSSCFKNMIIYNAVISGI-----HEQMKNLMKLMPRKPIL-KDIHFEALLNKEKK 661 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH-----HHHHHHHHHhCCCcchh-HHHHHHHHhhhccc
Confidence 56677777776653 4888899998764 34566677777776654 45567777765543
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.03 E-value=4.5e+02 Score=24.30 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=23.9
Q ss_pred HHHHHcCCHHHHHHHHHhccc-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRK-----R----NLSSWHLMISGYAANGQGADGLMLFEQM 220 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~-----~----~~~tyn~li~~~~~~g~~~~A~~l~~~M 220 (475)
.-|.+.|++++|.++|+.+.. . ...+-..+..++.+.|+.++.+.+--+|
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345555555555555555421 0 1113334445555566666555554444
Done!