Query 038373
Match_columns 475
No_of_seqs 510 out of 3751
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 17:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.1E-34 1.1E-38 294.5 23.5 196 114-310 9-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.2E-33 4.1E-38 290.2 22.3 184 95-279 26-224 (501)
3 2xpi_A Anaphase-promoting comp 99.9 7.4E-27 2.5E-31 245.3 23.5 336 89-451 78-504 (597)
4 2xpi_A Anaphase-promoting comp 99.9 1.3E-24 4.3E-29 228.3 22.8 274 175-451 284-579 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 5E-23 1.7E-27 218.0 10.3 152 159-311 123-286 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.9 7.1E-23 2.4E-27 216.8 7.6 146 128-279 127-286 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.8 3.8E-17 1.3E-21 162.0 21.7 329 94-451 32-368 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.7 1.1E-15 3.6E-20 151.5 24.1 231 93-328 65-302 (388)
9 2y4t_A DNAJ homolog subfamily 99.7 1.2E-15 4.2E-20 153.8 23.5 268 93-382 24-324 (450)
10 2y4t_A DNAJ homolog subfamily 99.7 1.7E-14 5.7E-19 145.4 28.4 232 94-331 93-363 (450)
11 2gw1_A Mitochondrial precursor 99.6 2E-14 6.8E-19 147.1 20.3 328 95-450 6-443 (514)
12 1b89_A Protein (clathrin heavy 99.6 1.9E-15 6.5E-20 149.3 8.8 209 95-330 32-240 (449)
13 2gw1_A Mitochondrial precursor 99.6 2.7E-14 9.4E-19 146.1 17.2 329 93-450 37-477 (514)
14 3mkr_A Coatomer subunit epsilo 99.6 8.7E-13 3E-17 125.7 25.7 228 97-332 36-270 (291)
15 4eqf_A PEX5-related protein; a 99.6 1.5E-13 5.1E-18 134.7 20.8 235 93-330 63-314 (365)
16 3fp2_A TPR repeat-containing p 99.5 3.6E-13 1.2E-17 138.7 20.6 327 96-451 26-491 (537)
17 4eqf_A PEX5-related protein; a 99.5 3.1E-13 1.1E-17 132.4 17.0 226 92-321 96-351 (365)
18 1fch_A Peroxisomal targeting s 99.5 1.4E-12 4.8E-17 127.5 21.6 233 94-330 63-318 (368)
19 3hym_B Cell division cycle pro 99.5 5.1E-12 1.7E-16 121.1 24.5 232 97-330 58-303 (330)
20 3hym_B Cell division cycle pro 99.5 4.9E-12 1.7E-16 121.3 23.1 264 97-388 24-303 (330)
21 3ieg_A DNAJ homolog subfamily 99.5 5.2E-11 1.8E-15 115.2 29.6 232 94-331 70-340 (359)
22 3cv0_A Peroxisome targeting si 99.5 2.4E-12 8.2E-17 123.2 19.2 232 94-329 20-272 (327)
23 1fch_A Peroxisomal targeting s 99.5 2.7E-12 9.3E-17 125.4 19.9 225 92-321 95-354 (368)
24 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-11 5.5E-16 113.3 23.8 201 95-299 37-244 (252)
25 2vq2_A PILW, putative fimbrial 99.4 1.9E-11 6.4E-16 110.2 22.7 206 93-301 6-219 (225)
26 3cv0_A Peroxisome targeting si 99.4 5.3E-12 1.8E-16 120.8 20.1 225 93-321 53-310 (327)
27 3ieg_A DNAJ homolog subfamily 99.4 5.5E-11 1.9E-15 115.1 27.3 271 94-388 2-305 (359)
28 2ho1_A Type 4 fimbrial biogene 99.4 3.5E-11 1.2E-15 111.0 23.8 201 129-332 38-244 (252)
29 2vq2_A PILW, putative fimbrial 99.4 6.4E-11 2.2E-15 106.7 24.0 201 128-332 8-217 (225)
30 2pl2_A Hypothetical conserved 99.4 3.3E-11 1.1E-15 109.4 21.0 193 93-291 3-211 (217)
31 3mkr_A Coatomer subunit epsilo 99.4 2.7E-11 9.3E-16 115.4 21.0 217 102-331 6-234 (291)
32 2q7f_A YRRB protein; TPR, prot 99.4 2.3E-11 7.9E-16 111.3 19.1 196 92-291 20-219 (243)
33 1xnf_A Lipoprotein NLPI; TPR, 99.4 5.1E-11 1.7E-15 111.1 21.4 217 108-330 18-248 (275)
34 3uq3_A Heat shock protein STI1 99.4 3.5E-11 1.2E-15 110.9 19.3 222 95-327 5-237 (258)
35 3fp2_A TPR repeat-containing p 99.4 1.8E-10 6E-15 118.5 25.9 234 96-331 244-496 (537)
36 1b89_A Protein (clathrin heavy 99.3 6.1E-12 2.1E-16 124.3 13.2 210 89-323 55-266 (449)
37 2q7f_A YRRB protein; TPR, prot 99.3 9.4E-11 3.2E-15 107.1 19.9 203 126-332 21-228 (243)
38 3u4t_A TPR repeat-containing p 99.3 1.9E-10 6.5E-15 107.2 20.7 231 98-333 6-257 (272)
39 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.3E-10 4.4E-15 108.4 19.4 218 94-319 42-268 (275)
40 1ouv_A Conserved hypothetical 99.3 3.3E-09 1.1E-13 99.2 28.3 227 93-331 4-256 (273)
41 2pl2_A Hypothetical conserved 99.2 5.6E-10 1.9E-14 101.2 19.6 191 126-322 3-210 (217)
42 3uq3_A Heat shock protein STI1 99.2 3.8E-10 1.3E-14 103.8 17.8 189 129-331 6-207 (258)
43 2h6f_A Protein farnesyltransfe 99.2 5.5E-10 1.9E-14 110.4 19.3 232 94-330 96-352 (382)
44 3nf1_A KLC 1, kinesin light ch 99.2 9.1E-11 3.1E-15 111.3 12.2 236 93-328 25-309 (311)
45 2ond_A Cleavage stimulation fa 99.2 1.3E-08 4.5E-13 97.3 25.9 232 95-330 8-274 (308)
46 3as5_A MAMA; tetratricopeptide 99.1 2.1E-08 7.1E-13 86.8 22.0 160 95-256 8-171 (186)
47 3u4t_A TPR repeat-containing p 99.1 4.4E-09 1.5E-13 97.8 17.9 205 95-302 37-260 (272)
48 3vtx_A MAMA; tetratricopeptide 99.1 1.6E-08 5.5E-13 88.4 19.6 157 97-255 7-167 (184)
49 4abn_A Tetratricopeptide repea 99.1 6.9E-09 2.3E-13 105.7 19.6 202 111-317 84-312 (474)
50 2ond_A Cleavage stimulation fa 99.0 4.5E-08 1.5E-12 93.5 23.9 196 93-291 48-267 (308)
51 3vtx_A MAMA; tetratricopeptide 99.0 1.9E-08 6.5E-13 87.9 19.4 170 126-300 3-177 (184)
52 3as5_A MAMA; tetratricopeptide 99.0 2.3E-08 8E-13 86.5 19.6 162 165-329 10-176 (186)
53 4a1s_A PINS, partner of inscut 99.0 3.7E-09 1.3E-13 104.8 14.7 232 95-326 48-332 (411)
54 1ouv_A Conserved hypothetical 99.0 1.8E-07 6.2E-12 87.2 25.6 188 93-291 36-248 (273)
55 3ro2_A PINS homolog, G-protein 99.0 6.8E-09 2.3E-13 98.8 15.9 231 96-326 6-292 (338)
56 3sf4_A G-protein-signaling mod 99.0 1.2E-08 3.9E-13 100.5 17.9 235 92-326 6-296 (406)
57 4abn_A Tetratricopeptide repea 99.0 8E-09 2.7E-13 105.2 17.0 192 93-291 100-318 (474)
58 4a1s_A PINS, partner of inscut 99.0 7.2E-09 2.5E-13 102.7 14.6 232 96-327 87-373 (411)
59 3ro2_A PINS homolog, G-protein 98.9 1.8E-08 6.3E-13 95.8 16.2 233 95-327 43-333 (338)
60 2ooe_A Cleavage stimulation fa 98.9 1.3E-07 4.4E-12 97.6 21.3 231 95-329 230-495 (530)
61 2fo7_A Synthetic consensus TPR 98.9 9.1E-08 3.1E-12 77.8 16.0 124 98-222 4-131 (136)
62 1xi4_A Clathrin heavy chain; a 98.9 5E-07 1.7E-11 99.7 25.5 208 93-327 1103-1310(1630)
63 3sf4_A G-protein-signaling mod 98.9 3.6E-08 1.2E-12 96.9 15.4 232 95-326 47-336 (406)
64 3edt_B KLC 2, kinesin light ch 98.8 9.5E-08 3.3E-12 88.6 17.4 214 112-325 25-280 (283)
65 4gyw_A UDP-N-acetylglucosamine 98.8 1.1E-07 3.8E-12 101.4 19.2 160 94-256 8-172 (723)
66 3ulq_A Response regulator aspa 98.8 1.5E-07 5E-12 92.7 18.7 224 103-326 111-368 (383)
67 3edt_B KLC 2, kinesin light ch 98.8 4.1E-08 1.4E-12 91.2 13.8 152 140-291 13-195 (283)
68 2h6f_A Protein farnesyltransfe 98.8 1.9E-07 6.4E-12 92.2 19.0 196 129-330 98-308 (382)
69 4gyw_A UDP-N-acetylglucosamine 98.8 1.9E-07 6.6E-12 99.5 19.8 160 126-291 6-171 (723)
70 1qqe_A Vesicular transport pro 98.8 3.6E-07 1.2E-11 86.5 19.7 192 97-291 39-266 (292)
71 2fo7_A Synthetic consensus TPR 98.8 5.1E-07 1.7E-11 73.2 17.4 123 132-256 5-130 (136)
72 3nf1_A KLC 1, kinesin light ch 98.7 2.7E-07 9.3E-12 87.0 16.5 164 128-291 27-221 (311)
73 4i17_A Hypothetical protein; T 98.7 7.9E-07 2.7E-11 80.4 18.9 193 126-331 5-214 (228)
74 4i17_A Hypothetical protein; T 98.7 1.1E-06 3.8E-11 79.4 19.8 196 93-300 5-216 (228)
75 3q15_A PSP28, response regulat 98.7 1.9E-06 6.6E-11 84.5 23.1 222 104-325 110-364 (378)
76 2xm6_A Protein corresponding t 98.7 2.2E-05 7.4E-10 79.9 30.4 220 93-323 37-285 (490)
77 2xm6_A Protein corresponding t 98.7 2.1E-05 7.1E-10 80.0 30.2 223 93-326 73-325 (490)
78 1hz4_A MALT regulatory protein 98.7 2.4E-06 8.1E-11 83.4 22.2 228 97-325 55-321 (373)
79 2ooe_A Cleavage stimulation fa 98.7 2.3E-06 8E-11 88.0 23.2 195 93-291 270-489 (530)
80 1hz4_A MALT regulatory protein 98.7 6.5E-06 2.2E-10 80.3 25.3 224 101-325 20-281 (373)
81 1qqe_A Vesicular transport pro 98.7 7E-07 2.4E-11 84.5 17.7 202 110-326 32-266 (292)
82 1xi4_A Clathrin heavy chain; a 98.6 8.1E-06 2.8E-10 90.3 24.9 196 92-311 1131-1328(1630)
83 3mv2_B Coatomer subunit epsilo 98.6 7.4E-06 2.5E-10 77.4 21.5 177 147-331 85-287 (310)
84 3mv2_B Coatomer subunit epsilo 98.6 2.1E-06 7.3E-11 81.1 17.0 197 91-296 67-285 (310)
85 3qky_A Outer membrane assembly 98.6 2.5E-06 8.6E-11 78.9 17.1 164 93-256 13-222 (261)
86 4g1t_A Interferon-induced prot 98.5 6.4E-06 2.2E-10 82.9 21.4 212 93-307 49-291 (472)
87 3ulq_A Response regulator aspa 98.5 6.5E-06 2.2E-10 80.7 20.2 193 95-291 143-365 (383)
88 2pzi_A Probable serine/threoni 98.5 3.4E-06 1.2E-10 89.7 18.4 183 139-328 402-604 (681)
89 3urz_A Uncharacterized protein 98.5 6.3E-06 2.2E-10 73.6 17.3 181 101-305 10-198 (208)
90 3qou_A Protein YBBN; thioredox 98.5 1.7E-05 5.9E-10 74.7 21.1 160 129-290 118-280 (287)
91 2pzi_A Probable serine/threoni 98.4 5.4E-06 1.8E-10 88.2 18.3 181 106-292 402-603 (681)
92 3q15_A PSP28, response regulat 98.4 1.4E-05 4.8E-10 78.2 19.9 193 95-291 141-362 (378)
93 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.6E-05 5.4E-10 70.6 18.4 126 95-223 6-150 (213)
94 4g1t_A Interferon-induced prot 98.4 3.7E-05 1.3E-09 77.2 23.1 200 127-331 50-281 (472)
95 3dra_A Protein farnesyltransfe 98.4 0.00011 3.6E-09 69.8 24.2 224 103-330 40-292 (306)
96 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.4E-05 4.8E-10 71.0 17.2 131 165-296 8-153 (213)
97 3urz_A Uncharacterized protein 98.4 2.6E-05 8.8E-10 69.6 18.1 127 199-331 59-191 (208)
98 2vsy_A XCC0866; transferase, g 98.4 1.7E-05 5.9E-10 82.3 19.3 148 108-257 2-156 (568)
99 3qky_A Outer membrane assembly 98.3 2.4E-05 8.1E-10 72.2 18.1 181 128-330 15-228 (261)
100 2r5s_A Uncharacterized protein 98.3 1.7E-05 5.7E-10 68.6 15.9 24 232-255 111-134 (176)
101 4e6h_A MRNA 3'-END-processing 98.3 3.9E-05 1.3E-09 81.0 20.9 234 95-332 302-576 (679)
102 2ifu_A Gamma-SNAP; membrane fu 98.3 1.5E-05 5E-10 75.9 15.9 196 108-328 4-225 (307)
103 2ifu_A Gamma-SNAP; membrane fu 98.3 1.5E-05 5.1E-10 75.8 15.8 158 97-256 38-222 (307)
104 2r5s_A Uncharacterized protein 98.3 1.7E-05 5.9E-10 68.5 14.8 152 166-322 9-169 (176)
105 2yhc_A BAMD, UPF0169 lipoprote 98.3 4.2E-05 1.4E-09 69.0 17.5 184 128-331 4-218 (225)
106 2vsy_A XCC0866; transferase, g 98.3 1.9E-05 6.6E-10 81.9 17.2 146 141-291 2-154 (568)
107 2yhc_A BAMD, UPF0169 lipoprote 98.2 5.1E-05 1.7E-09 68.5 17.4 179 95-291 4-210 (225)
108 3gw4_A Uncharacterized protein 98.2 2.2E-05 7.5E-10 68.9 14.2 151 140-291 4-173 (203)
109 3u3w_A Transcriptional activat 98.2 0.00013 4.3E-09 68.7 19.7 95 196-290 157-262 (293)
110 1a17_A Serine/threonine protei 98.2 4.9E-05 1.7E-09 64.1 15.2 92 97-189 15-107 (166)
111 3qou_A Protein YBBN; thioredox 98.2 3.2E-05 1.1E-09 72.8 15.2 158 160-322 114-280 (287)
112 2qfc_A PLCR protein; TPR, HTH, 98.2 7.3E-05 2.5E-09 70.4 17.7 162 129-290 76-262 (293)
113 2lni_A Stress-induced-phosphop 98.2 8.2E-05 2.8E-09 60.0 15.8 116 92-208 13-132 (133)
114 1na0_A Designed protein CTPR3; 98.2 4.9E-05 1.7E-09 60.3 14.2 93 130-223 11-106 (125)
115 1na0_A Designed protein CTPR3; 98.2 9.9E-05 3.4E-09 58.5 15.8 93 163-256 9-104 (125)
116 1a17_A Serine/threonine protei 98.2 7.2E-05 2.5E-09 63.0 15.6 88 168-256 18-108 (166)
117 3u3w_A Transcriptional activat 98.1 0.00044 1.5E-08 64.9 21.6 188 126-322 44-262 (293)
118 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00013 4.6E-09 68.5 17.9 160 163-322 75-262 (293)
119 3rjv_A Putative SEL1 repeat pr 98.1 0.00015 5E-09 64.8 17.3 171 113-291 4-194 (212)
120 3gw4_A Uncharacterized protein 98.1 6.2E-05 2.1E-09 65.9 14.3 150 105-256 2-174 (203)
121 2vyi_A SGTA protein; chaperone 98.1 9.2E-05 3.2E-09 59.2 13.7 115 94-209 11-129 (131)
122 3rjv_A Putative SEL1 repeat pr 98.1 0.00063 2.2E-08 60.6 20.5 161 93-261 16-199 (212)
123 4ga2_A E3 SUMO-protein ligase 98.0 5.5E-05 1.9E-09 63.6 12.2 115 107-222 9-128 (150)
124 3q7a_A Farnesyltransferase alp 98.0 0.0012 4.1E-08 63.4 22.9 226 98-328 57-334 (349)
125 4ga2_A E3 SUMO-protein ligase 98.0 1.7E-05 5.9E-10 66.7 8.8 107 175-286 9-120 (150)
126 2c2l_A CHIP, carboxy terminus 98.0 4.7E-05 1.6E-09 71.4 12.1 188 128-325 4-198 (281)
127 4f3v_A ESX-1 secretion system 98.0 6.6E-05 2.3E-09 70.0 12.6 192 104-303 16-247 (282)
128 1p5q_A FKBP52, FK506-binding p 98.0 8E-05 2.7E-09 71.8 13.2 92 163-256 196-292 (336)
129 2e2e_A Formate-dependent nitri 97.9 0.00012 3.9E-09 63.0 12.9 116 106-222 21-143 (177)
130 2e2e_A Formate-dependent nitri 97.9 4E-05 1.4E-09 66.0 9.9 135 139-278 21-161 (177)
131 2vyi_A SGTA protein; chaperone 97.9 0.00029 1E-08 56.2 14.1 113 164-280 13-129 (131)
132 2lni_A Stress-induced-phosphop 97.9 0.00026 9E-09 56.9 13.5 91 165-256 18-111 (133)
133 3e4b_A ALGK; tetratricopeptide 97.9 0.0035 1.2E-07 62.9 24.2 199 98-308 144-365 (452)
134 4gco_A Protein STI-1; structur 97.8 0.00045 1.6E-08 56.0 14.2 85 137-222 22-109 (126)
135 4e6h_A MRNA 3'-END-processing 97.8 0.00075 2.6E-08 71.2 18.5 212 94-307 342-584 (679)
136 3gyz_A Chaperone protein IPGC; 97.8 0.00031 1.1E-08 59.2 12.6 93 130-223 38-133 (151)
137 4b4t_Q 26S proteasome regulato 97.8 0.00022 7.5E-09 70.6 13.4 189 103-291 12-242 (434)
138 2c2l_A CHIP, carboxy terminus 97.8 0.0027 9.1E-08 59.3 20.2 189 94-292 3-197 (281)
139 2vgx_A Chaperone SYCD; alterna 97.8 0.00022 7.6E-09 59.7 11.4 91 165-256 23-116 (148)
140 1elw_A TPR1-domain of HOP; HOP 97.8 0.00072 2.5E-08 52.7 13.7 91 97-188 6-97 (118)
141 1elr_A TPR2A-domain of HOP; HO 97.8 0.00021 7.1E-09 57.2 10.6 95 196-291 6-105 (131)
142 1elr_A TPR2A-domain of HOP; HO 97.7 0.00043 1.5E-08 55.3 12.4 91 131-222 7-107 (131)
143 1p5q_A FKBP52, FK506-binding p 97.7 0.00068 2.3E-08 65.2 15.9 125 163-291 147-291 (336)
144 3dss_A Geranylgeranyl transfer 97.7 0.0027 9.3E-08 60.6 19.6 232 93-330 24-308 (331)
145 2dba_A Smooth muscle cell asso 97.7 0.0011 3.7E-08 54.3 14.8 97 93-190 26-126 (148)
146 3ro3_A PINS homolog, G-protein 97.7 0.00052 1.8E-08 56.9 12.8 126 165-290 11-154 (164)
147 2vgx_A Chaperone SYCD; alterna 97.7 0.00025 8.4E-09 59.4 10.4 92 130-222 23-117 (148)
148 3upv_A Heat shock protein STI1 97.7 0.00097 3.3E-08 53.5 13.7 86 136-222 12-100 (126)
149 4gco_A Protein STI-1; structur 97.7 0.001 3.4E-08 53.9 13.5 104 96-200 14-121 (126)
150 3e4b_A ALGK; tetratricopeptide 97.7 0.0035 1.2E-07 62.8 20.4 182 97-291 178-384 (452)
151 3sz7_A HSC70 cochaperone (SGT) 97.7 0.0011 3.6E-08 56.1 14.2 25 267-291 81-105 (164)
152 3gyz_A Chaperone protein IPGC; 97.6 0.00041 1.4E-08 58.4 11.0 96 94-190 35-131 (151)
153 1wao_1 Serine/threonine protei 97.6 0.00081 2.8E-08 68.1 15.2 111 174-289 17-134 (477)
154 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00051 1.7E-08 60.2 12.0 135 95-249 38-176 (198)
155 1elw_A TPR1-domain of HOP; HOP 97.6 0.0017 5.9E-08 50.5 14.1 92 164-256 5-99 (118)
156 2kck_A TPR repeat; tetratricop 97.6 0.00051 1.8E-08 53.1 10.9 90 167-256 10-104 (112)
157 3dra_A Protein farnesyltransfe 97.6 0.0027 9.3E-08 60.1 17.6 207 94-303 66-299 (306)
158 3ro3_A PINS homolog, G-protein 97.6 0.00036 1.2E-08 57.9 10.4 92 165-256 51-156 (164)
159 3sz7_A HSC70 cochaperone (SGT) 97.6 0.0016 5.4E-08 55.0 14.5 88 134-222 17-107 (164)
160 3q49_B STIP1 homology and U bo 97.6 0.0015 5.3E-08 52.8 13.9 25 196-220 79-103 (137)
161 2xcb_A PCRH, regulatory protei 97.6 0.00084 2.9E-08 55.4 12.3 84 137-221 27-113 (142)
162 3q49_B STIP1 homology and U bo 97.6 0.001 3.5E-08 53.9 12.7 98 92-190 6-104 (137)
163 2xcb_A PCRH, regulatory protei 97.6 0.00064 2.2E-08 56.1 11.4 96 94-190 17-113 (142)
164 4f3v_A ESX-1 secretion system 97.6 0.0014 4.8E-08 61.0 14.6 124 99-223 106-237 (282)
165 4gcn_A Protein STI-1; structur 97.6 0.0014 4.9E-08 53.0 13.0 91 131-222 11-111 (127)
166 4gcn_A Protein STI-1; structur 97.5 0.00061 2.1E-08 55.2 10.5 57 165-221 10-69 (127)
167 2kck_A TPR repeat; tetratricop 97.5 0.00089 3E-08 51.7 11.1 90 132-222 10-105 (112)
168 2dba_A Smooth muscle cell asso 97.5 0.0019 6.6E-08 52.8 13.2 93 194-291 28-125 (148)
169 3upv_A Heat shock protein STI1 97.5 0.0013 4.5E-08 52.7 11.9 95 95-190 4-99 (126)
170 2fbn_A 70 kDa peptidylprolyl i 97.4 0.0024 8.1E-08 55.8 13.4 87 195-285 89-176 (198)
171 1hxi_A PEX5, peroxisome target 97.4 0.0011 3.7E-08 53.3 9.8 91 99-190 21-112 (121)
172 4b4t_Q 26S proteasome regulato 97.3 0.0084 2.9E-07 59.0 18.0 184 136-319 12-238 (434)
173 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0014 4.9E-08 65.8 11.8 92 163-256 317-413 (457)
174 1wao_1 Serine/threonine protei 97.2 0.00049 1.7E-08 69.7 7.8 114 104-218 15-134 (477)
175 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.0059 2E-07 61.3 15.7 125 163-291 268-412 (457)
176 2xev_A YBGF; tetratricopeptide 97.2 0.0025 8.6E-08 50.9 10.4 86 137-223 11-105 (129)
177 1hxi_A PEX5, peroxisome target 97.2 0.003 1E-07 50.6 10.5 84 171-256 25-112 (121)
178 3n71_A Histone lysine methyltr 97.2 0.0016 5.3E-08 66.0 10.5 62 196-257 395-463 (490)
179 3k9i_A BH0479 protein; putativ 97.2 0.0018 6.2E-08 51.3 8.8 59 196-255 29-87 (117)
180 2uy1_A Cleavage stimulation fa 97.1 0.019 6.6E-07 58.1 18.1 199 112-323 196-410 (493)
181 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0014 4.9E-08 63.0 9.2 143 95-256 179-326 (338)
182 3n71_A Histone lysine methyltr 97.1 0.0023 7.7E-08 64.8 10.8 118 174-291 320-461 (490)
183 3k9i_A BH0479 protein; putativ 97.1 0.00091 3.1E-08 53.1 6.5 83 141-223 3-90 (117)
184 2xev_A YBGF; tetratricopeptide 97.1 0.015 5.3E-07 46.1 13.9 87 169-257 8-104 (129)
185 1ihg_A Cyclophilin 40; ppiase 97.1 0.0057 1.9E-07 59.6 13.0 116 165-285 225-361 (370)
186 3rkv_A Putative peptidylprolyl 97.0 0.0081 2.8E-07 50.4 11.6 59 164-222 64-125 (162)
187 2if4_A ATFKBP42; FKBP-like, al 96.9 0.0036 1.2E-07 60.2 10.0 60 196-256 232-291 (338)
188 2l6j_A TPR repeat-containing p 96.9 0.0021 7.1E-08 49.8 6.8 94 194-291 4-104 (111)
189 1ihg_A Cyclophilin 40; ppiase 96.9 0.011 3.9E-07 57.4 13.4 87 162-250 272-362 (370)
190 3rkv_A Putative peptidylprolyl 96.9 0.016 5.6E-07 48.4 12.7 61 195-256 64-124 (162)
191 3q7a_A Farnesyltransferase alp 96.8 0.048 1.7E-06 52.2 17.1 197 93-291 86-328 (349)
192 2l6j_A TPR repeat-containing p 96.6 0.0014 4.7E-08 50.9 4.0 61 96-156 5-66 (111)
193 1dce_A Protein (RAB geranylger 96.6 0.049 1.7E-06 56.2 16.5 115 107-222 40-172 (567)
194 3mkq_A Coatomer beta'-subunit; 96.5 0.16 5.6E-06 54.2 20.6 155 104-292 608-763 (814)
195 2hr2_A Hypothetical protein; a 96.5 0.02 6.9E-07 48.2 10.4 58 165-222 59-130 (159)
196 1klx_A Cysteine rich protein B 96.5 0.02 6.7E-07 46.9 10.4 106 143-256 10-124 (138)
197 3ma5_A Tetratricopeptide repea 96.5 0.016 5.4E-07 44.3 8.9 58 163-220 7-67 (100)
198 2kat_A Uncharacterized protein 96.4 0.013 4.6E-07 45.8 8.7 75 147-222 4-81 (115)
199 2hr2_A Hypothetical protein; a 96.4 0.026 8.8E-07 47.5 10.6 88 169-256 17-129 (159)
200 3dss_A Geranylgeranyl transfer 96.3 0.4 1.4E-05 45.5 19.5 189 139-331 40-272 (331)
201 1klx_A Cysteine rich protein B 96.3 0.038 1.3E-06 45.2 10.9 111 108-225 8-128 (138)
202 1na3_A Designed protein CTPR2; 96.3 0.035 1.2E-06 40.7 9.7 78 95-173 9-87 (91)
203 2kat_A Uncharacterized protein 96.2 0.032 1.1E-06 43.5 9.8 77 113-190 3-80 (115)
204 2uy1_A Cleavage stimulation fa 96.1 0.35 1.2E-05 48.8 19.0 183 93-291 211-410 (493)
205 1na3_A Designed protein CTPR2; 95.9 0.085 2.9E-06 38.5 10.2 75 164-239 10-87 (91)
206 1dce_A Protein (RAB geranylger 95.7 0.44 1.5E-05 49.0 18.2 166 143-313 44-242 (567)
207 3qww_A SET and MYND domain-con 95.7 0.05 1.7E-06 54.0 10.7 80 177-256 312-409 (433)
208 3ma5_A Tetratricopeptide repea 95.5 0.11 3.9E-06 39.3 9.9 60 129-189 8-67 (100)
209 3qww_A SET and MYND domain-con 95.4 0.045 1.6E-06 54.3 8.9 83 209-291 313-408 (433)
210 3qwp_A SET and MYND domain-con 95.4 0.059 2E-06 53.4 9.7 85 172-256 296-398 (429)
211 3ly7_A Transcriptional activat 95.3 0.55 1.9E-05 45.0 15.8 136 126-268 192-346 (372)
212 1zu2_A Mitochondrial import re 95.3 0.035 1.2E-06 46.6 6.6 58 179-238 62-133 (158)
213 3mkq_A Coatomer beta'-subunit; 95.1 1.2 4.2E-05 47.2 19.8 145 98-292 632-776 (814)
214 3qwp_A SET and MYND domain-con 95.0 0.089 3.1E-06 52.1 9.6 88 204-291 297-397 (429)
215 3ly7_A Transcriptional activat 94.5 0.63 2.2E-05 44.6 13.9 140 92-233 191-347 (372)
216 2kc7_A BFR218_protein; tetratr 93.9 0.26 8.9E-06 36.7 8.1 52 203-256 9-62 (99)
217 1zu2_A Mitochondrial import re 93.8 0.13 4.4E-06 43.1 6.6 78 177-256 16-118 (158)
218 2kc7_A BFR218_protein; tetratr 93.4 0.45 1.5E-05 35.3 8.8 54 170-223 7-64 (99)
219 1wy6_A Hypothetical protein ST 92.2 3.9 0.00013 33.0 14.3 65 196-262 93-157 (172)
220 1pc2_A Mitochondria fission pr 91.8 1.2 4.2E-05 36.8 9.7 78 144-222 14-99 (152)
221 3mkq_B Coatomer subunit alpha; 91.7 5.6 0.00019 33.7 17.3 129 171-323 13-141 (177)
222 1pc2_A Mitochondria fission pr 90.6 1.2 3.9E-05 36.9 8.4 83 211-296 15-103 (152)
223 3bee_A Putative YFRE protein; 89.9 2.1 7.2E-05 31.9 8.8 61 162-222 5-71 (93)
224 2v5f_A Prolyl 4-hydroxylase su 87.2 2.9 9.9E-05 31.6 8.2 27 196-222 48-74 (104)
225 3u64_A Protein TP_0956; tetrat 86.8 6 0.00021 36.5 11.2 59 196-256 201-267 (301)
226 2v5f_A Prolyl 4-hydroxylase su 86.4 2.1 7.2E-05 32.5 7.0 26 266-291 47-72 (104)
227 3mkq_B Coatomer subunit alpha; 86.0 15 0.0005 31.1 18.0 128 139-293 16-143 (177)
228 1v54_E Cytochrome C oxidase po 85.7 4.9 0.00017 30.5 8.1 73 210-293 26-98 (109)
229 3bee_A Putative YFRE protein; 85.7 5.9 0.0002 29.4 9.0 64 94-157 5-72 (93)
230 3u64_A Protein TP_0956; tetrat 85.0 4 0.00014 37.6 9.1 50 177-226 218-272 (301)
231 2ff4_A Probable regulatory pro 83.2 5.3 0.00018 38.6 9.8 128 127-268 111-248 (388)
232 1wy6_A Hypothetical protein ST 82.7 7.1 0.00024 31.5 8.3 82 108-193 74-155 (172)
233 2p58_C Putative type III secre 81.6 12 0.00042 28.2 8.7 78 143-224 22-99 (116)
234 2uwj_G Type III export protein 79.7 12 0.0004 28.3 8.1 78 143-224 21-98 (115)
235 2y69_E Cytochrome C oxidase su 78.8 11 0.00037 30.3 8.1 72 211-293 70-141 (152)
236 2ff4_A Probable regulatory pro 77.7 7.7 0.00026 37.4 8.8 59 131-190 174-232 (388)
237 1nzn_A CGI-135 protein, fissio 77.3 10 0.00034 30.1 7.7 78 211-291 18-100 (126)
238 4gns_B Protein CSD3, chitin bi 77.2 24 0.00082 37.2 12.8 123 167-292 252-398 (754)
239 4gns_B Protein CSD3, chitin bi 76.7 12 0.00042 39.4 10.5 123 131-255 251-397 (754)
240 4fhn_B Nucleoporin NUP120; pro 74.2 64 0.0022 35.9 16.2 144 134-285 818-991 (1139)
241 2p58_C Putative type III secre 73.8 16 0.00053 27.7 7.3 47 204-256 50-96 (116)
242 2nsz_A Programmed cell death p 73.3 15 0.0005 29.2 7.9 63 165-227 9-76 (129)
243 1nzn_A CGI-135 protein, fissio 73.1 32 0.0011 27.1 10.3 78 144-222 17-102 (126)
244 4b4t_P 26S proteasome regulato 73.1 73 0.0025 31.1 17.3 181 109-291 30-244 (445)
245 1v54_E Cytochrome C oxidase po 72.4 27 0.00092 26.5 8.4 48 143-190 25-72 (109)
246 1wdy_A 2-5A-dependent ribonucl 71.3 7.5 0.00026 34.7 6.6 202 99-314 6-233 (285)
247 2uwj_G Type III export protein 68.7 15 0.00052 27.7 6.3 48 203-256 48-95 (115)
248 4fhn_B Nucleoporin NUP120; pro 66.9 92 0.0031 34.6 15.4 142 100-247 817-989 (1139)
249 2ion_A PDCD4, programmed cell 66.6 14 0.00048 30.3 6.6 63 165-227 11-78 (152)
250 3ltj_A Alpharep-4; protein eng 65.0 61 0.0021 27.1 19.1 142 93-244 26-167 (201)
251 1wdy_A 2-5A-dependent ribonucl 64.7 5.8 0.0002 35.5 4.4 208 101-325 42-274 (285)
252 1k1a_A B-cell lymphoma 3-encod 63.0 7.3 0.00025 34.0 4.6 169 137-314 15-197 (241)
253 2y69_E Cytochrome C oxidase su 60.5 54 0.0018 26.3 8.4 44 147-190 72-115 (152)
254 4h7y_A Dual specificity protei 60.1 70 0.0024 26.2 9.8 97 192-291 11-120 (161)
255 3eu9_A Huntingtin-interacting 57.1 7.2 0.00025 33.8 3.4 196 103-314 14-224 (240)
256 3ffl_A Anaphase-promoting comp 56.1 54 0.0019 27.2 8.3 122 157-292 12-149 (167)
257 4b4t_R RPN7, 26S proteasome re 55.0 1E+02 0.0034 29.9 11.6 94 196-291 133-234 (429)
258 3txn_A 26S proteasome regulato 54.9 1.5E+02 0.0051 28.4 14.8 161 128-288 19-204 (394)
259 3ljn_A Hypothetical protein; a 52.6 16 0.00055 34.3 5.3 209 93-315 16-259 (364)
260 3lpz_A GET4 (YOR164C homolog); 52.4 1.5E+02 0.0052 27.7 17.9 108 97-217 37-159 (336)
261 4h7y_A Dual specificity protei 51.0 66 0.0023 26.4 7.8 31 92-122 10-46 (161)
262 2rfa_A Transient receptor pote 49.4 35 0.0012 29.2 6.8 86 101-188 6-97 (232)
263 1k1a_A B-cell lymphoma 3-encod 48.0 23 0.00078 30.6 5.3 174 101-289 12-204 (241)
264 4b4t_R RPN7, 26S proteasome re 46.7 83 0.0028 30.5 9.5 115 143-259 109-238 (429)
265 2p1h_A APAF-1, apoptotic prote 46.1 84 0.0029 22.9 7.6 64 147-214 24-87 (94)
266 3aji_A 26S proteasome non-ATPa 45.1 18 0.00062 31.1 4.1 82 101-187 9-94 (231)
267 1ug3_A EIF4GI, eukaryotic prot 44.5 62 0.0021 30.3 7.9 26 167-192 15-40 (339)
268 3ltm_A Alpha-REP4; protein eng 44.4 1.4E+02 0.0047 24.9 19.2 142 93-244 31-172 (211)
269 3ygs_P Procaspase 9; apoptosis 42.8 31 0.0011 25.7 4.4 66 149-216 25-90 (97)
270 3lpz_A GET4 (YOR164C homolog); 41.5 2.2E+02 0.0076 26.5 18.6 133 165-309 37-179 (336)
271 3lvg_A Clathrin heavy chain 1; 41.4 0.86 2.9E-05 45.2 -5.6 126 81-213 69-218 (624)
272 2d2s_A Exocyst complex compone 41.4 76 0.0026 28.0 7.5 100 201-304 25-142 (235)
273 3eiq_C Programmed cell death p 41.0 67 0.0023 30.4 7.5 67 196-264 219-287 (358)
274 2zu6_B Programmed cell death p 40.5 65 0.0022 29.7 7.2 61 166-226 169-234 (307)
275 3hra_A Ankyrin repeat family p 39.2 31 0.0011 28.7 4.6 82 102-188 9-94 (201)
276 2wpv_A GET4, UPF0363 protein Y 38.9 2.3E+02 0.008 26.0 19.5 108 97-217 35-157 (312)
277 3lvg_A Clathrin heavy chain 1; 38.6 0.04 1.4E-06 54.5 -15.3 210 97-325 56-287 (624)
278 4b4t_P 26S proteasome regulato 38.6 2.8E+02 0.0096 26.8 15.8 175 142-316 30-237 (445)
279 3kea_A K1L; tropism, ANK repea 37.4 47 0.0016 29.8 5.8 76 108-188 9-84 (285)
280 2nsz_A Programmed cell death p 36.2 64 0.0022 25.4 5.6 72 132-204 11-84 (129)
281 3rjo_A Endoplasmic reticulum a 35.5 3E+02 0.01 26.3 18.3 35 137-174 117-153 (419)
282 3l6a_A Eukaryotic translation 35.4 90 0.0031 29.6 7.5 22 270-291 143-164 (364)
283 1zbp_A Hypothetical protein VP 35.3 1.3E+02 0.0044 27.1 8.0 67 172-238 6-77 (273)
284 3v31_A Ankyrin repeat family A 33.7 80 0.0027 25.2 6.1 81 102-187 7-90 (167)
285 1zbp_A Hypothetical protein VP 33.6 84 0.0029 28.4 6.4 118 201-329 4-132 (273)
286 3o48_A Mitochondria fission 1 33.4 1.8E+02 0.0062 23.1 9.7 70 226-296 37-110 (134)
287 3esl_A Checkpoint serine/threo 32.9 2.3E+02 0.008 24.2 10.6 54 142-195 93-147 (202)
288 2d2s_A Exocyst complex compone 32.8 1.9E+02 0.0064 25.4 8.6 87 99-188 22-116 (235)
289 3o48_A Mitochondria fission 1 31.3 74 0.0025 25.3 5.0 46 211-256 60-105 (134)
290 2dzn_A Probable 26S proteasome 31.1 18 0.00063 31.0 1.7 20 102-121 6-25 (228)
291 3kea_A K1L; tropism, ANK repea 31.1 57 0.0019 29.3 5.2 81 102-188 35-117 (285)
292 3ffl_A Anaphase-promoting comp 30.4 2.3E+02 0.0079 23.4 8.4 57 100-156 25-91 (167)
293 1y8m_A FIS1; mitochondria, unk 30.3 91 0.0031 25.1 5.5 51 245-296 58-109 (144)
294 2ion_A PDCD4, programmed cell 30.1 53 0.0018 26.8 4.2 72 132-204 13-86 (152)
295 3ltm_A Alpha-REP4; protein eng 29.9 2.4E+02 0.0081 23.4 16.5 142 126-280 31-172 (211)
296 3t8k_A Uncharacterized protein 29.8 65 0.0022 26.9 5.0 59 104-163 12-70 (186)
297 2wpv_A GET4, UPF0363 protein Y 29.5 3.4E+02 0.011 25.0 18.1 133 165-310 35-178 (312)
298 2rfa_A Transient receptor pote 29.1 70 0.0024 27.2 5.2 57 102-163 41-103 (232)
299 1n00_A Annexin GH1; membrane-b 29.0 3.4E+02 0.012 24.9 11.4 167 130-304 77-273 (321)
300 3hra_A Ankyrin repeat family p 28.2 46 0.0016 27.6 3.8 122 102-228 43-172 (201)
301 1bd8_A P19INK4D CDK4/6 inhibit 28.1 41 0.0014 26.6 3.3 150 131-291 2-156 (156)
302 2l0z_A Glycoprotein G2; zinc-b 27.6 19 0.00066 21.9 0.8 10 465-474 20-29 (42)
303 2etb_A Transient receptor pote 24.5 17 0.00057 32.1 0.1 28 135-162 6-33 (256)
304 2xai_A ASB-9, ankyrin repeat a 24.0 75 0.0026 27.9 4.6 19 102-120 7-25 (261)
305 1y8m_A FIS1; mitochondria, unk 23.9 2.8E+02 0.0096 22.2 10.3 62 271-332 45-112 (144)
306 3eu9_A Huntingtin-interacting 23.9 53 0.0018 28.0 3.4 178 101-291 45-233 (240)
307 1dm5_A Annexin XII E105K mutan 23.9 4.2E+02 0.014 24.2 13.6 104 197-304 74-195 (315)
308 2yru_A Steroid receptor RNA ac 23.5 1.1E+02 0.0036 23.8 4.6 42 216-257 48-89 (118)
309 3b7b_A Euchromatic histone-lys 22.8 26 0.00089 30.2 1.1 175 101-290 14-199 (237)
310 1dm5_A Annexin XII E105K mutan 22.7 4.4E+02 0.015 24.1 11.4 103 130-238 73-197 (315)
311 1wgl_A TOLL-interacting protei 22.3 1E+02 0.0035 20.5 3.7 49 111-162 9-57 (59)
312 1oy3_D Transcription factor in 22.2 59 0.002 28.6 3.5 83 101-188 12-100 (282)
313 1awc_B Protein (GA binding pro 22.0 1E+02 0.0035 24.1 4.7 20 102-121 6-25 (153)
314 3twr_A Tankyrase-2; ankyrin re 21.5 1.2E+02 0.0042 23.9 5.1 19 102-120 12-30 (165)
315 3q5w_A Protein CUT8; proteasom 21.3 4.2E+02 0.014 23.3 9.5 45 91-138 60-104 (245)
316 3utm_A Tankyrase-1; tankyrase, 21.2 2.9E+02 0.0099 24.7 8.3 212 99-321 25-268 (351)
317 3ygs_P Procaspase 9; apoptosis 20.8 1.3E+02 0.0043 22.2 4.5 36 244-284 52-87 (97)
318 3jxi_A Vanilloid receptor-rela 20.8 26 0.00089 30.8 0.7 26 137-162 11-36 (260)
319 3qye_A TBC1 domain family memb 20.4 4.5E+02 0.015 24.0 9.3 95 215-310 209-307 (331)
320 1hm6_A Annexin 1; phospholipid 20.3 4.4E+02 0.015 24.5 9.2 188 98-291 104-318 (346)
321 3ltj_A Alpharep-4; protein eng 20.2 3.5E+02 0.012 22.0 17.6 142 126-280 26-167 (201)
322 3v31_A Ankyrin repeat family A 20.2 2.2E+02 0.0076 22.3 6.5 50 272-323 106-158 (167)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.1e-34 Score=294.53 Aligned_cols=196 Identities=11% Similarity=0.097 Sum_probs=162.3
Q ss_pred HHHHHHhcccCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 038373 114 AIEYMGQDASAS--A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN---------TRL 181 (475)
Q Consensus 114 A~~l~~~~~~~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~---------~~~ 181 (475)
+..+++++.+.+ + ....++.+|++|++.|++++|.++|++|.+.|+.||.+|||+||++|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 334445554432 2 2345888899999999999999999999999999999999999999987664 788
Q ss_pred HHHHHHhcc----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373 182 ARKVFDQLR----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKN 257 (475)
Q Consensus 182 A~~~f~~m~----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 257 (475)
|.++|++|. .||++|||+||.+|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999997 4789999999999999999999999999999999999999999999999999999999999999985
Q ss_pred hCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 038373 258 DYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIH 310 (475)
Q Consensus 258 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~ 310 (475)
.|+.||..||++||++|++.|++++|.++|++| +..|+..||++|+..|+..
T Consensus 169 -~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 -SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp -TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred -cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 499999999999999999999999999999999 7889999999999888754
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.2e-33 Score=290.18 Aligned_cols=184 Identities=12% Similarity=0.135 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHcCCCCCH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKS---------IEMGKRVHELLRTSAFVKDV 163 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~p~~ 163 (475)
...++.+|++|++.|++++|+++|++|...| ||.+|||+||.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 3468889999999999999999999998755 999999999999987654 78999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 164 ELNNKLIEMYGKCCNTRLARKVFDQLRK----RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~ 239 (475)
+|||+||++|++.|++++|.++|++|.+ ||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||++||++|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999984 799999999999999999999999999999999999999999999999
Q ss_pred HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcC
Q 038373 240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAG 279 (475)
Q Consensus 240 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g 279 (475)
++.|++++|.+++++|.+. |+.|+..||+.|+..|+..+
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSHH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999955 99999999999999998753
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=7.4e-27 Score=245.31 Aligned_cols=336 Identities=9% Similarity=-0.063 Sum_probs=245.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 89 LRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 89 ~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
..+.+++..|+.++..|.+.|++++|+.+|+++....||..++..+..+|.+.|++++|.++|+.+... .++..+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 78 TDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 344578999999999999999999999999998866699999999999999999999999999988643 689999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc-cC------------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---
Q 038373 169 LIEMYGKCCNTRLARKVFDQLR-KR------------------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH--- 226 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~-~~------------------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~--- 226 (475)
++.+|.++|++++|.++|+++. .. ++.+|+.++.+|.+.|++++|+++|++|.+.+..
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 9999999999999999999543 32 4889999999999999999999999999875421
Q ss_pred -------------------------------------------------------------------CCHHHHHHHHHHH
Q 038373 227 -------------------------------------------------------------------PDKETFLVVFAAC 239 (475)
Q Consensus 227 -------------------------------------------------------------------pd~~t~~~li~~~ 239 (475)
+|..+|+.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 4555666666666
Q ss_pred HccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHH
Q 038373 240 ASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELED 317 (475)
Q Consensus 240 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~ 317 (475)
.+.|++++|.++|+.+.+. + ..+..+|+.++.+|.+.|++++|.++|+++ ....+..+|+.+...|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHH
Confidence 6666666666666666532 2 124555666666666666666666666665 12345677777777777777777777
Q ss_pred HHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCccccccccH
Q 038373 318 RAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRYVLHDIDE 397 (475)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t~~~~l~~ 397 (475)
+.++.+.++.|..... + ...+......|++++|+++|++|.+.+ ..+..++..+...
T Consensus 394 ~~~~~~~~~~~~~~~~------------~----------~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPA------------W----------IGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp HHHHHHHHHCTTCHHH------------H----------HHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHH------------H----------HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 7766666655543311 0 001122344677999999999998653 2356667777777
Q ss_pred HHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCc
Q 038373 398 EAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGR 451 (475)
Q Consensus 398 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~ 451 (475)
+.+.+......+.+..+..+.+..+.....+...|.+.|+.++|.++|.++...
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777666655544444444433332333457888899999999999999998754
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.3e-24 Score=228.28 Aligned_cols=274 Identities=8% Similarity=-0.031 Sum_probs=155.1
Q ss_pred HcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373 175 KCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~ 252 (475)
+.|++++|.++|++|.+ +|..+|+.++.+|.+.|++++|+++|++|.+.+. .+..+|+.++.++.+.|++++|.+++
T Consensus 284 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLIS 362 (597)
T ss_dssp THHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33444444444444433 5667888888888888888888888888876542 24555666666666666666666666
Q ss_pred HHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 253 ~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
+.+.+ ....+..+|+.++.+|.+.|++++|.++|+++ .. ..+..+|+.++.+|.+.|++++|.+.++.+.+..|..
T Consensus 363 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 363 NDLVD--RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp HHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHh--hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 66652 12224555666666666666666666666655 11 2245566666666666666655555555555544433
Q ss_pred hhh-hccC----CCCCcc---cccceeEEe--cCe--EEEEEccCccchHHHHHHHHHHHHHHc----CcccC--Ccccc
Q 038373 331 AIV-DKIP----LPPRKK---QSATNMLEE--KNR--VSDYRSTDLYRGEYEKMKGLNGQMREA----GYVPD--TRYVL 392 (475)
Q Consensus 331 ~~~-~~~~----~~~~~~---~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~a~~l~~~M~~~----G~~Pd--~~t~~ 392 (475)
... ..+. ..+... ......+.. .+. ....+......|++++|+++|++|.+. |..|+ ..+|.
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 211 0000 000000 000000000 000 000111224467799999999999876 77888 45677
Q ss_pred ccccHHHHHHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCc
Q 038373 393 HDIDEEAKEKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGR 451 (475)
Q Consensus 393 ~~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~ 451 (475)
.+...+.+.+......+.+..+..+.+........+...|.+.|+.++|.+.|.++.+.
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 77777776666555544444444433332233446778889999999999999988653
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=5e-23 Score=218.00 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=128.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 038373 159 FVKDVELNNKLIEMYGKCCNTRLARKVFDQLR-------KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET 231 (475)
Q Consensus 159 ~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~-------~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 231 (475)
+.--..|||+||++|||+|++++|.++|++|. .||++|||+||+|||+.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456799999999999999999999998875 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHH
Q 038373 232 FLVVFAACASAEA-VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFE----PTVEVWEALRNF 306 (475)
Q Consensus 232 ~~~li~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~t~~~li~~ 306 (475)
||+||+++|+.|+ .++|.++|++|.++ |+.||.++|+++++++.+.+-++...+++.++... |.+.|.+.|.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 9999999999998 57899999999966 99999999999999999887777666665555211 224555556677
Q ss_pred HHHcC
Q 038373 307 AQIHG 311 (475)
Q Consensus 307 ~~~~g 311 (475)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 76655
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=7.1e-23 Score=216.81 Aligned_cols=146 Identities=11% Similarity=0.094 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc----cCCHHHHHHH
Q 038373 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRT---SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR----KRNLSSWHLM 200 (475)
Q Consensus 128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~----~~~~~tyn~l 200 (475)
..|||+||++||+.|++++|.++|.+|.+ .|+.||++|||+||++||+.|++++|.++|++|. .||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 46899999999999999999999988764 5899999999999999999999999999999998 4899999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC------HHHHHHHHH
Q 038373 201 ISGYAANGQG-ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG------IEHYIAIIK 273 (475)
Q Consensus 201 i~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~------~~~y~~li~ 273 (475)
|.|||+.|+. ++|.++|++|.+.|+.||.+||+++++++.+.+-++ ..+.+. . ++.|+ +.+...|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~----~Vrkv~-P-~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK----AVHKVK-P-TFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH----HHGGGC-C-CCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH----HHHHhC-c-ccCCCCCCcccccchHHHHH
Confidence 9999999985 789999999999999999999999998877654443 334443 2 55554 566678888
Q ss_pred HHHhcC
Q 038373 274 VLGSAG 279 (475)
Q Consensus 274 ~~~~~g 279 (475)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 888876
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.76 E-value=3.8e-17 Score=162.00 Aligned_cols=329 Identities=9% Similarity=-0.026 Sum_probs=230.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+...+..+...+.+.|++++|..+++...... .+..+|..+..++.+.|++++|.+.|+.+.+.. +.+..+|..+..+
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 110 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAA 110 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 34556666667888899999988887755533 466778888888999999999999999888764 3456678888899
Q ss_pred HHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF 249 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~ 249 (475)
|.+.|++++|.+.|+++.+ | +...|+.+...|...|++++|.++|+++.+.. .-+..+|+.+...+...|++++|.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp HHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999888763 4 44567778888888899999999998888753 224678888888889999999999
Q ss_pred HHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 250 LYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 250 ~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
..|+++.+. .| +...|..+-..|...|++++|.+.|++. ...| +..+|..+...+...|+++.|.+.++...+.
T Consensus 190 ~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 190 HHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999888742 34 4567788888888999999999888877 3334 5778888888889999998888888877777
Q ss_pred CCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCC-ccccccccHHHHHHhhh
Q 038373 327 DPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDT-RYVLHDIDEEAKEKALQ 405 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~-~t~~~~l~~~~~~~~l~ 405 (475)
.|.....-. .........|++++|...|+++.+. .|+. .++..+...+...+...
T Consensus 267 ~p~~~~~~~----------------------~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 267 QPHFPDAYC----------------------NLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp CSSCHHHHH----------------------HHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred CCCCHHHHH----------------------HHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 665432100 0011123356688899999888765 3443 23332222222222222
Q ss_pred hhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcCc
Q 038373 406 YHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVGR 451 (475)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~~ 451 (475)
...+.+..+..+.+........+...|.+.|+.++|.+.|.++...
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2222233333322221112235666788889999999999988754
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.71 E-value=1.1e-15 Score=151.54 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=137.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.+...|+.+...|.+.|++++|++.|+++....|+. .+|..+..++.+.|++++|.+.+..+.+.. +.+..++..+-.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 143 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGN 143 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 466778888888888888888888888766555543 457777777888888888888887777654 233455666666
Q ss_pred HHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a 248 (475)
.|.+.|++++|.++|+++.+ | +..+|+.+...|.+.|++++|+..|+++.+... -+...|..+-..+...|++++|
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777653 3 456777777777777777777777777665321 1233444444455555555555
Q ss_pred HHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373 249 FLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 249 ~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
...++.... ..| +..++..+...|.+.|++++|.+.|+++ ...| +..+|..+...+.+.|++++|.+.++...+
T Consensus 223 ~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 223 VAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555544441 122 2344444555555555555555555444 1122 234444444455555555444444444444
Q ss_pred cCC
Q 038373 326 LDP 328 (475)
Q Consensus 326 ~~~ 328 (475)
+.|
T Consensus 300 ~~p 302 (388)
T 1w3b_A 300 LCP 302 (388)
T ss_dssp HCT
T ss_pred hCc
Confidence 443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.70 E-value=1.2e-15 Score=153.78 Aligned_cols=268 Identities=9% Similarity=-0.038 Sum_probs=214.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.++..|..+...|.+.|++++|+.+|+++.... .+..+|..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 567789999999999999999999999877644 467789999999999999999999999999876 557889999999
Q ss_pred HHHHcCCHHHHHHHHHhccc--C-CH---HHHHHHHHH------------HHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK--R-NL---SSWHLMISG------------YAANGQGADGLMLFEQMRKTGPHPDKETFL 233 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~--~-~~---~tyn~li~~------------~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 233 (475)
+|.+.|++++|.++|+++.+ | +. ..|..++.. |.+.|++++|+.+|+++.+.. ..+..++.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 99999999999999999875 3 33 677766544 999999999999999998753 34778899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--------
Q 038373 234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEAL-------- 303 (475)
Q Consensus 234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~l-------- 303 (475)
.+...+.+.|++++|.++|+.+.+. ...+..+|..+...|.+.|++++|.+.|+++ ...| +...|..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999843 2236788999999999999999999999998 3334 44555554
Q ss_pred ----HHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHH
Q 038373 304 ----RNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQM 379 (475)
Q Consensus 304 ----i~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M 379 (475)
...+...|+++.|...++...+..|......... ...........|++++|+..++++
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~------------------~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS------------------KERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHH------------------HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHH------------------HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7788999999999888888887777643210000 000001122356688888888887
Q ss_pred HHc
Q 038373 380 REA 382 (475)
Q Consensus 380 ~~~ 382 (475)
.+.
T Consensus 322 ~~~ 324 (450)
T 2y4t_A 322 LQM 324 (450)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.68 E-value=1.7e-14 Score=145.45 Aligned_cols=232 Identities=15% Similarity=0.075 Sum_probs=178.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH----HHHHHHHH------------HHhccCCHHHHHHHHHHHHHc
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAGY----DVFSSLLD------------SCGNLKSIEMGKRVHELLRTS 157 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~----~t~~~ll~------------~~~~~~~~~~a~~~~~~m~~~ 157 (475)
+...|..+...|.+.|++++|.+.|+++....|+. ..+..+.. .+.+.|++++|.++++.+.+.
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45667777777777777777777777766655554 33444433 366677777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHH
Q 038373 158 AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-ETFL 233 (475)
Q Consensus 158 g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~ 233 (475)
. ..+..++..+..+|.+.|++++|.++|+++.+ .+..+|+.+...|...|++++|++.|+++... .|+. ..+.
T Consensus 173 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 249 (450)
T 2y4t_A 173 C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFA 249 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred C-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHH
Confidence 4 45677888888888888888888888887753 46789999999999999999999999998864 4543 3444
Q ss_pred HH------------HHHHHccCCHHHHHHHHHHHhhhCCCcCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038373 234 VV------------FAACASAEAVKEGFLYFEIMKNDYGIVPG-----IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP 295 (475)
Q Consensus 234 ~l------------i~~~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p 295 (475)
.+ ...|.+.|++++|..+|+.+.+. .|+ ..+|..+...|.+.|++++|.+.++++ ...|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 44 78888999999999999998843 444 457888999999999999999999987 3334
Q ss_pred -CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 296 -TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 296 -~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
+...|..+...|...|+++.|.+.++...++.|+..
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 688999999999999999999999999888888764
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2e-14 Score=147.13 Aligned_cols=328 Identities=8% Similarity=-0.022 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
...|-.+-..+.+.|++++|+..|+++....||..+|..+..++.+.|++++|.+.++.+.+.+ +.+..++..+..+|.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 3456667778999999999999999988777999999999999999999999999999998875 556789999999999
Q ss_pred HcCCHHHHHHHHHhcccCC-------------------------------------------------------------
Q 038373 175 KCCNTRLARKVFDQLRKRN------------------------------------------------------------- 193 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~~~------------------------------------------------------------- 193 (475)
+.|++++|...|+++.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999998774211
Q ss_pred ---------------------HHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHH
Q 038373 194 ---------------------LSSWHLMISGYAA---NGQGADGLMLFEQMRK-----TGPHP--------DKETFLVVF 236 (475)
Q Consensus 194 ---------------------~~tyn~li~~~~~---~g~~~~A~~l~~~M~~-----~g~~p--------d~~t~~~li 236 (475)
...|..+...+.. .|++++|+.+|+++.+ ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 2223333333333 7999999999999987 31122 355788888
Q ss_pred HHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCch
Q 038373 237 AACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALRNFAQIHGDVE 314 (475)
Q Consensus 237 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~~g~~~ 314 (475)
..+...|++++|..+++.+.+. . |+...|..+...|.+.|++++|.+.|++. ... .+...|..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 8999999999999999998843 3 44778889999999999999999999987 333 46778888889999999999
Q ss_pred HHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCcc-ccc
Q 038373 315 LEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTRY-VLH 393 (475)
Q Consensus 315 ~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~t-~~~ 393 (475)
.|...++...+..|.....-. .........|++++|...++++.+. .|+... +..
T Consensus 322 ~A~~~~~~~~~~~~~~~~~~~----------------------~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 377 (514)
T 2gw1_A 322 QAGKDFDKAKELDPENIFPYI----------------------QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNF 377 (514)
T ss_dssp HHHHHHHHHHHTCSSCSHHHH----------------------HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHH----------------------HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHH
Confidence 998888888777665432100 0011123356688888888887754 343222 222
Q ss_pred cccHHHHHHhhhhhhHHHHHHhhcccCCCC------Cchheeccccc---cccccchhHHHhhhcC
Q 038373 394 DIDEEAKEKALQYHSERLAIAYGLISTPPR------MPLRIIKNLRI---CGDCHNAIKIMSKIVG 450 (475)
Q Consensus 394 ~l~~~~~~~~l~~~~~~l~~~~~~~~~~~~------~~~~ii~~~~~---~g~~~~A~~~~~~m~~ 450 (475)
....+...+......+.+..+..+.+..+. ....+...+.. .|+.++|.+.+.+...
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 212222222222222222222222222211 11234444555 7888888888777654
No 12
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.58 E-value=1.9e-15 Score=149.27 Aligned_cols=209 Identities=11% Similarity=0.018 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
..+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|..+++..++. .+++.+.+.|+.+|.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 359999999999999999999999653 67789999999999999999999988877764 566889999999999
Q ss_pred HcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373 175 KCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI 254 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 254 (475)
|.|+++++.++|+ .|+..+|+.+...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.+..
T Consensus 106 Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~K 173 (449)
T 1b89_A 106 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 173 (449)
T ss_dssp ---CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999998885 478889999999999999999999999987 3899999999999999999999997
Q ss_pred HhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 255 MKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 255 m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
+. +..+|..++.+|+..|+++.|......+...|+. ...++..|.+.|++++|...++.-..+++..
T Consensus 174 A~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 174 AN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp HT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred cC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 72 6789999999999999999998887777655555 4468899999999987777777666666544
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.7e-14 Score=146.09 Aligned_cols=329 Identities=8% Similarity=-0.062 Sum_probs=237.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---------
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD--------- 162 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--------- 162 (475)
||...|..+..+|.+.|++++|++.|++.....|+ ..+|..+..++.+.|++++|...|+.+.+.+- ++
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHH
Confidence 78999999999999999999999999987765554 56789999999999999999999999877651 11
Q ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Q 038373 163 ----------------------------------------------------------------------VELNNKLIEM 172 (475)
Q Consensus 163 ----------------------------------------------------------------------~~~~~~Li~~ 172 (475)
...+..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 2223333333
Q ss_pred HH---HcCCHHHHHHHHHhccc----------------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038373 173 YG---KCCNTRLARKVFDQLRK----------------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF 232 (475)
Q Consensus 173 ~~---k~g~~~~A~~~f~~m~~----------------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 232 (475)
+. +.|++++|..+|+++.+ | +..+|..+...|...|++++|..+|+++.+.. |+..+|
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~ 273 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSY 273 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHH
Confidence 33 38999999999998765 2 35689999999999999999999999998865 448889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc
Q 038373 233 LVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIH 310 (475)
Q Consensus 233 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~ 310 (475)
..+...+...|++++|...++.+... ...+...|..+...|.+.|++++|.+.|++. .. ..+...|..+...+...
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence 99999999999999999999998832 2235678899999999999999999999987 22 33677888898999999
Q ss_pred CCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCCc-
Q 038373 311 GDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDTR- 389 (475)
Q Consensus 311 g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~~- 389 (475)
|+++.|...++...+..|.....-. .........|++++|...++++.+. .|+..
T Consensus 352 ~~~~~A~~~~~~~~~~~~~~~~~~~----------------------~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~ 407 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKFPEAPEVPN----------------------FFAEILTDKNDFDKALKQYDLAIEL--ENKLDG 407 (514)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHH----------------------HHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSS
T ss_pred CCHHHHHHHHHHHHHHcccCHHHHH----------------------HHHHHHHHCCCHHHHHHHHHHHHHh--hhccch
Confidence 9999888888887776655332100 0011122356789999999988763 23322
Q ss_pred ------cccccccHHHH---HHhhhhhhHHHHHHhhcccCCCCCchheeccccccccccchhHHHhhhcC
Q 038373 390 ------YVLHDIDEEAK---EKALQYHSERLAIAYGLISTPPRMPLRIIKNLRICGDCHNAIKIMSKIVG 450 (475)
Q Consensus 390 ------t~~~~l~~~~~---~~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g~~~~A~~~~~~m~~ 450 (475)
.+......+.. .+......+.+..+..+.+........+...|.+.|+.++|.+.|.+...
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22222122222 22222222223333332222222223456678888999999999987754
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.57 E-value=8.7e-13 Score=125.75 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK-DVELNNKLIEMYGK 175 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~Li~~~~k 175 (475)
..-.+..+|...|++++|+..++.. ..|+..++..+...+...++.++|.+.++++.+.+..| +...+..+-..|.+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 4456778999999999999988764 23777789999999999999999999999999887655 56667777789999
Q ss_pred cCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHccCCHHHHHHHH
Q 038373 176 CCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETF---LVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~---~~li~~~~~~g~~~~a~~~~ 252 (475)
.|++++|.+.|++ ..+...|..+...|.+.|++++|.+.|+++.+.. |+..-+ ..++..+...|++++|..+|
T Consensus 114 ~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 114 DQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp TTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 9999999999998 4578899999999999999999999999999864 664322 22334445669999999999
Q ss_pred HHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchH-HHHHHHHHhccCCC
Q 038373 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVEL-EDRAEELLGDLDPS 329 (475)
Q Consensus 253 ~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~-a~~~~~~l~~~~~~ 329 (475)
+++.+. ...+...|+.+...|.+.|++++|.+.|++. ...| +..+|..++..+...|+.++ +.+.++.+.++.|+
T Consensus 190 ~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 190 QEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999954 3347888999999999999999999999997 3333 67889999999999999865 56777888888887
Q ss_pred Chh
Q 038373 330 KAI 332 (475)
Q Consensus 330 ~~~ 332 (475)
...
T Consensus 268 ~~~ 270 (291)
T 3mkr_A 268 HPF 270 (291)
T ss_dssp CHH
T ss_pred ChH
Confidence 753
No 15
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.57 E-value=1.5e-13 Score=134.74 Aligned_cols=235 Identities=10% Similarity=-0.052 Sum_probs=191.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.+...|..+...+.+.|++++|+++|++.....| +..+|..+...+.+.|++++|...|+.+.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3556688889999999999999999998776444 66789999999999999999999999998875 456899999999
Q ss_pred HHHHcCCHHHHHHHHHhccc--CC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK--RN-----------LSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-PDKETFLVVFA 237 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~--~~-----------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~~~li~ 237 (475)
.|.+.|++++|...|+++.+ |+ ...++.+...|.+.|++++|+++|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999998864 21 224455688999999999999999999986432 26889999999
Q ss_pred HHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchH
Q 038373 238 ACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVEL 315 (475)
Q Consensus 238 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~ 315 (475)
.+...|++++|...++...+. ...+..+|+.+...|.+.|++++|.+.|++. ...| +..+|..+...|...|+.++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998843 2235788999999999999999999999988 3334 58889999999999999999
Q ss_pred HHHHHHHHhccCCCC
Q 038373 316 EDRAEELLGDLDPSK 330 (475)
Q Consensus 316 a~~~~~~l~~~~~~~ 330 (475)
|...++...++.|+.
T Consensus 300 A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 300 AVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCccc
Confidence 988888887776554
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.53 E-value=3.6e-13 Score=138.71 Aligned_cols=327 Identities=11% Similarity=-0.008 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
..|..+-..+.+.|++++|++.|++.....| +..+|..+..++.+.|++++|.+.++.+.+.. +.+..++..+..+|.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 4455556666666666666666666554333 44556666666666666666666666666654 345566666666666
Q ss_pred HcCCHHHHHHHHH-------------------------------------------------------------------
Q 038373 175 KCCNTRLARKVFD------------------------------------------------------------------- 187 (475)
Q Consensus 175 k~g~~~~A~~~f~------------------------------------------------------------------- 187 (475)
+.|++++|...|+
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 6666666666553
Q ss_pred ------------------------------------------hccc--CC--------HHHHHHHHHHHHhcCChHHHHH
Q 038373 188 ------------------------------------------QLRK--RN--------LSSWHLMISGYAANGQGADGLM 215 (475)
Q Consensus 188 ------------------------------------------~m~~--~~--------~~tyn~li~~~~~~g~~~~A~~ 215 (475)
++.+ |+ ..+|..+...+...|++++|.+
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 2221 11 2246666677788888899999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-
Q 038373 216 LFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF- 293 (475)
Q Consensus 216 l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~- 293 (475)
.|++..+. .|+..+|..+...+...|++++|...++...+. . ..+..+|..+...|.+.|++++|.+.|++. ..
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL-N-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99888874 466778888888888899999999998888743 2 224677888888899999999999988887 22
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHH
Q 038373 294 EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMK 373 (475)
Q Consensus 294 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 373 (475)
..+...|..+...+...|+++.|...++...+..|.....-. .........|++++|.
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPT----------------------FFAEILTDRGDFDTAI 398 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH----------------------HHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH----------------------HHHHHHHHhCCHHHHH
Confidence 234677888888888899998888888777777665432100 0011112356788999
Q ss_pred HHHHHHHHcCcccCCcccccccc-------HHHHH----------HhhhhhhHHHHHHhhcccCCCCCchheeccccccc
Q 038373 374 GLNGQMREAGYVPDTRYVLHDID-------EEAKE----------KALQYHSERLAIAYGLISTPPRMPLRIIKNLRICG 436 (475)
Q Consensus 374 ~l~~~M~~~G~~Pd~~t~~~~l~-------~~~~~----------~~l~~~~~~l~~~~~~~~~~~~~~~~ii~~~~~~g 436 (475)
..|++..+.. |+.......+. ..... +......+.+..+..+.+........+...|.+.|
T Consensus 399 ~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 399 KQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9998887654 33222211111 11111 22222222233333322222222235566678889
Q ss_pred cccchhHHHhhhcCc
Q 038373 437 DCHNAIKIMSKIVGR 451 (475)
Q Consensus 437 ~~~~A~~~~~~m~~~ 451 (475)
+.++|.+.|.+....
T Consensus 477 ~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 477 KIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999886543
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.51 E-value=3.1e-13 Score=132.42 Aligned_cols=226 Identities=11% Similarity=0.007 Sum_probs=181.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC---------C
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFV---------K 161 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~---------p 161 (475)
..+...|+.+...|.+.|++++|++.|++.....| +..+|..+..++...|++++|.+.++.+.+..-. .
T Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 175 (365)
T 4eqf_A 96 PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG 175 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc
Confidence 35678999999999999999999999998776555 4778999999999999999999999999875310 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK--R---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVF 236 (475)
Q Consensus 162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li 236 (475)
...+++.+...|.+.|++++|..+|+++.+ | +..+|+.+...|.+.|++++|++.|++..+.. ..+..+|+.+.
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 254 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLG 254 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 133445668899999999999999998863 3 67899999999999999999999999998853 33678999999
Q ss_pred HHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHHHH
Q 038373 237 AACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-------------TVEVWE 301 (475)
Q Consensus 237 ~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~t~~ 301 (475)
.++.+.|++++|...|+...+. .| +..+|..+...|.+.|++++|.+.|++. ...| +...|.
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 331 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWA 331 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHH
Confidence 9999999999999999998843 44 4778999999999999999999999987 1112 367899
Q ss_pred HHHHHHHHcCCchHHHHHHH
Q 038373 302 ALRNFAQIHGDVELEDRAEE 321 (475)
Q Consensus 302 ~li~~~~~~g~~~~a~~~~~ 321 (475)
.|-.++...|+.+.+.++.+
T Consensus 332 ~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 332 ALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHcCcHHHHHHHHH
Confidence 99999999999876666544
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.51 E-value=1.4e-12 Score=127.49 Aligned_cols=233 Identities=9% Similarity=-0.052 Sum_probs=193.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+...|..+...+.+.|++++|+..|++.....| +..++..+..++...|++++|...++.+.+.. +.+..++..+...
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455677888899999999999999999876554 56678899999999999999999999998876 5688999999999
Q ss_pred HHHcCCHHHHHHHHHhccc--C-CHHHHHH---------------HHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRK--R-NLSSWHL---------------MISGYAANGQGADGLMLFEQMRKTGPH-PDKETFL 233 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~---------------li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~~ 233 (475)
|.+.|++++|.+.|+++.+ | +...+.. .+..+...|++++|+..|+++.+.... ++..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 9999999999999998764 2 2222221 244445899999999999999885422 1588999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc
Q 038373 234 VVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIH 310 (475)
Q Consensus 234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~ 310 (475)
.+...+...|++++|...++...+. .| +...|..+...|.+.|++++|.+.|++. .. ..+...|..+...|.+.
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999999998843 34 4678999999999999999999999987 22 34678899999999999
Q ss_pred CCchHHHHHHHHHhccCCCC
Q 038373 311 GDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 311 g~~~~a~~~~~~l~~~~~~~ 330 (475)
|+++.|...++...++.|..
T Consensus 299 g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 99999888888877765544
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=5.1e-12 Score=121.13 Aligned_cols=232 Identities=10% Similarity=-0.057 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLK-SIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
.+..++..+.+.|++++|..+|++.....| +...+..+...+...| ++++|.+.++...+.. +.+..++..+...|.
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 344455555566666666666655444333 3344555555566666 6666666666665543 234555666666666
Q ss_pred HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373 175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 251 (475)
+.|++++|...|++..+ | +...|..+...|...|++++|.+.|++..+.. ..+..++..+...+...|++++|...
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 66666666666665542 2 34455556666666666666666666665532 22445666666666666666666666
Q ss_pred HHHHhhhCC-------CcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373 252 FEIMKNDYG-------IVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEEL 322 (475)
Q Consensus 252 ~~~m~~~~g-------~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 322 (475)
++...+... ...+...|..+...|.+.|++++|.+.|++. .. ..+...|..+...+...|+.+.|.+.++.
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 665553210 0222345666666666666666666666655 11 22455566666666666666555555555
Q ss_pred HhccCCCC
Q 038373 323 LGDLDPSK 330 (475)
Q Consensus 323 l~~~~~~~ 330 (475)
..++.|+.
T Consensus 296 al~~~p~~ 303 (330)
T 3hym_B 296 ALGLRRDD 303 (330)
T ss_dssp TTTTCSCC
T ss_pred HHccCCCc
Confidence 55554443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.48 E-value=4.9e-12 Score=121.27 Aligned_cols=264 Identities=8% Similarity=-0.076 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
.+..+...+...|++++|+++|++.....|+ ...+..+..++...|++++|..++..+.+.. +.+..++..+...|..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 4566777888999999999999987664443 3456677788899999999999999998865 4567889999999999
Q ss_pred cC-CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373 176 CC-NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 176 ~g-~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 251 (475)
.| ++++|...|++..+ .+...|..+...|...|++++|++.|++..+.... +...+..+...+...|++++|.+.
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99 99999999998764 35779999999999999999999999999886422 456777789999999999999999
Q ss_pred HHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C----------CCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 038373 252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-P----------FEPTVEVWEALRNFAQIHGDVELEDRAE 320 (475)
Q Consensus 252 ~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~----------~~p~~~t~~~li~~~~~~g~~~~a~~~~ 320 (475)
++...+. ...+...+..+...|.+.|++++|.+.|++. . ...+..+|..+...+...|+.+.|...+
T Consensus 182 ~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 259 (330)
T 3hym_B 182 FSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259 (330)
T ss_dssp HHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999832 2335788999999999999999999999887 1 1334678999999999999999999888
Q ss_pred HHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHHHcCcccCC
Q 038373 321 ELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMREAGYVPDT 388 (475)
Q Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~G~~Pd~ 388 (475)
+...++.|.....-. .........|++++|...|++..+ +.|+.
T Consensus 260 ~~a~~~~~~~~~~~~----------------------~la~~~~~~g~~~~A~~~~~~al~--~~p~~ 303 (330)
T 3hym_B 260 RQALVLIPQNASTYS----------------------AIGYIHSLMGNFENAVDYFHTALG--LRRDD 303 (330)
T ss_dssp HHHHHHSTTCSHHHH----------------------HHHHHHHHHTCHHHHHHHHHTTTT--TCSCC
T ss_pred HHHHhhCccchHHHH----------------------HHHHHHHHhccHHHHHHHHHHHHc--cCCCc
Confidence 888777665432100 000111235668899998887654 34654
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.47 E-value=5.2e-11 Score=115.19 Aligned_cols=232 Identities=15% Similarity=0.061 Sum_probs=166.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC---CHH-HHHHH------------HHHHhccCCHHHHHHHHHHHHHc
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA---GYD-VFSSL------------LDSCGNLKSIEMGKRVHELLRTS 157 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p---~~~-t~~~l------------l~~~~~~~~~~~a~~~~~~m~~~ 157 (475)
+...|..+...|.+.|++++|.+.|++.....| +.. .+..+ ...+...|++++|.++++.+.+.
T Consensus 70 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 456677777778888888888888887766556 332 23333 35667778888888888887766
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 038373 158 AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFL 233 (475)
Q Consensus 158 g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~ 233 (475)
. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|...|++++|...|++..+.. |+ ...+.
T Consensus 150 ~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 226 (359)
T 3ieg_A 150 C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFA 226 (359)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHH
Confidence 4 45677788888888888888888888887653 356788888888888888888888888877643 32 22222
Q ss_pred ------------HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038373 234 ------------VVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-----EHYIAIIKVLGSAGHLIEAEEFVERM-PFEP 295 (475)
Q Consensus 234 ------------~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p 295 (475)
.+...+.+.|++++|...++...+. .|+. ..|..+...|.+.|++++|.+.|++. ...|
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 2255577888888888888887743 2332 23445677888888888888888877 2233
Q ss_pred -CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 296 -TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 296 -~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
+..+|..+...+...|+++.|.+.++...++.|+..
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 677888888888888888888888888777776653
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.46 E-value=2.4e-12 Score=123.25 Aligned_cols=232 Identities=12% Similarity=-0.039 Sum_probs=189.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+...|..+...+.+.|++++|+.+|++.....| +..++..+..++...|++++|.+.++.+.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344566777889999999999999998766444 56678888899999999999999999998875 5578899999999
Q ss_pred HHHcCCHHHHHHHHHhccc--C-CHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLM--------------IS-GYAANGQGADGLMLFEQMRKTGPHPDKETFLV 234 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~l--------------i~-~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ 234 (475)
|.+.|++++|.+.|++..+ | +...+..+ .. .+...|++++|.+.++++.+... .+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 9999999999999998764 2 22233333 22 37788999999999999988642 37789999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCC
Q 038373 235 VFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGD 312 (475)
Q Consensus 235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~ 312 (475)
+...+...|++++|...++.+.+. . ..+...+..+...|.+.|++++|.+.|++. .. ..+..+|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL-R-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999998843 2 235778999999999999999999999987 22 3467889999999999999
Q ss_pred chHHHHHHHHHhccCCC
Q 038373 313 VELEDRAEELLGDLDPS 329 (475)
Q Consensus 313 ~~~a~~~~~~l~~~~~~ 329 (475)
.+.|.+.++...++.|.
T Consensus 256 ~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99998888887776655
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.46 E-value=2.7e-12 Score=125.41 Aligned_cols=225 Identities=11% Similarity=-0.005 Sum_probs=185.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH--
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK-- 168 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-- 168 (475)
..+...|..+...|.+.|++++|++.|++.....| +..++..+...+...|++++|.+.+..+.+..- .+...+..
T Consensus 95 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 173 (368)
T 1fch_A 95 PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAE 173 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 35678899999999999999999999998766554 677899999999999999999999999988642 22222211
Q ss_pred -------------HHHHHHHcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 038373 169 -------------LIEMYGKCCNTRLARKVFDQLRK--R---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE 230 (475)
Q Consensus 169 -------------Li~~~~k~g~~~~A~~~f~~m~~--~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 230 (475)
.+..+.+.|++++|...|+++.+ | +..+|..+...|.+.|++++|+..|++..... ..+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 24444489999999999998863 3 47899999999999999999999999998753 23578
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C-----------
Q 038373 231 TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-T----------- 296 (475)
Q Consensus 231 t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~----------- 296 (475)
+|..+...+...|++++|...++...+. .| +...|..+...|.+.|++++|.+.|++. ...| +
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 9999999999999999999999998843 34 5778999999999999999999999887 1112 1
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHH
Q 038373 297 VEVWEALRNFAQIHGDVELEDRAEE 321 (475)
Q Consensus 297 ~~t~~~li~~~~~~g~~~~a~~~~~ 321 (475)
..+|..+..+|...|+.+.|..+.+
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 6899999999999999988776644
No 24
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=1.6e-11 Score=113.28 Aligned_cols=201 Identities=8% Similarity=-0.022 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~ 173 (475)
...|..+...+...|++++|++.|++.....| +..++..+...+...|++++|.+.++++.+.. ..+..++..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788889999999999999999998765444 56778888889999999999999999998775 45788889999999
Q ss_pred HHcCCHHHHHHHHHhccc----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373 174 GKCCNTRLARKVFDQLRK----R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~----~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a 248 (475)
.+.|++++|.++|+++.+ | +...|..+...|...|++++|.+.|++..+.. ..+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998765 3 45688888899999999999999999988754 23577888888899999999999
Q ss_pred HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH
Q 038373 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEV 299 (475)
Q Consensus 249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t 299 (475)
..+++.+.+ ....+...+..+...|.+.|+.++|.++++++ ...|+...
T Consensus 195 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 195 RQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 999998873 22235667888888899999999999988887 33344333
No 25
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.44 E-value=1.9e-11 Score=110.21 Aligned_cols=206 Identities=11% Similarity=-0.014 Sum_probs=143.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.+...|..+...+.+.|++++|++.|++.....| +...+..+...+...|++++|.+.++.+.+.. ..+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3455677777788888888888888877655443 45667777777788888888888888877654 446677777777
Q ss_pred HHHHc-CCHHHHHHHHHhccc----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038373 172 MYGKC-CNTRLARKVFDQLRK----R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAV 245 (475)
Q Consensus 172 ~~~k~-g~~~~A~~~f~~m~~----~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~ 245 (475)
.|.+. |++++|...|+++.+ | +...|..+...|...|++++|++.|+++.+.. ..+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888877654 2 24577777777788888888888887777643 12466777777777777888
Q ss_pred HHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 038373 246 KEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWE 301 (475)
Q Consensus 246 ~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~ 301 (475)
++|..+++...+. .-..+...+..+...+.+.|+.++|..+++.+ ...|+.....
T Consensus 164 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 8887777777632 11134555666777777777777777777766 2345444433
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.44 E-value=5.3e-12 Score=120.83 Aligned_cols=225 Identities=11% Similarity=0.023 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKL-- 169 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~L-- 169 (475)
.+...|..+...+.+.|++++|.+.|++.....| +..++..+...+...|++++|.+.++.+.+.. ..+...+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 131 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQ 131 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhH
Confidence 4677899999999999999999999998766554 66778899999999999999999999998764 2222233332
Q ss_pred ------------HH-HHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 170 ------------IE-MYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL 233 (475)
Q Consensus 170 ------------i~-~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 233 (475)
.. .|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|++.|++..+.. ..+..++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 210 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWN 210 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 22 37788999999999998763 367899999999999999999999999998763 23578899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------CHHH
Q 038373 234 VVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-------------TVEV 299 (475)
Q Consensus 234 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~t 299 (475)
.+...+...|++++|...++...+. . ..+...+..+...|.+.|++++|.+.|++. ...| +...
T Consensus 211 ~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 211 KLGATLANGNRPQEALDAYNRALDI-N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 9999999999999999999998843 2 225778899999999999999999999987 2233 3778
Q ss_pred HHHHHHHHHHcCCchHHHHHHH
Q 038373 300 WEALRNFAQIHGDVELEDRAEE 321 (475)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~ 321 (475)
|..+...+.+.|+.+.|...++
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999966655543
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.44 E-value=5.5e-11 Score=115.05 Aligned_cols=271 Identities=8% Similarity=-0.044 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
|+..|..+-..+.+.|++++|+..|++.....| +..++..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456788888899999999999999998766554 46778889999999999999999999998874 4477899999999
Q ss_pred HHHcCCHHHHHHHHHhccc--C----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRK--R----NLSSWHLM------------ISGYAANGQGADGLMLFEQMRKTGPHPDKETFLV 234 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~--~----~~~tyn~l------------i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ 234 (475)
|.+.|++++|...|++..+ | +...|..+ ...+...|++++|+++|+++.+.. ..+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 9999999999999998864 3 33345444 578999999999999999998764 346788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH----------
Q 038373 235 VFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEA---------- 302 (475)
Q Consensus 235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~---------- 302 (475)
+...+...|++++|...++...+. ...+...+..+...|.+.|++++|.+.|++. ...| +...|..
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999832 2336788999999999999999999999988 2223 3343332
Q ss_pred --HHHHHHHcCCchHHHHHHHHHhccCCCChhhhccCCCCCcccccceeEEecCeEEEEEccCccchHHHHHHHHHHHHH
Q 038373 303 --LRNFAQIHGDVELEDRAEELLGDLDPSKAIVDKIPLPPRKKQSATNMLEEKNRVSDYRSTDLYRGEYEKMKGLNGQMR 380 (475)
Q Consensus 303 --li~~~~~~g~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~M~ 380 (475)
+...+...|+.+.|...++...+..|......... ...........|++++|...+++..
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------------~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS------------------KERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH------------------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH------------------HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 24568889999999888888877777653210000 0000011123566899999999887
Q ss_pred HcCcccCC
Q 038373 381 EAGYVPDT 388 (475)
Q Consensus 381 ~~G~~Pd~ 388 (475)
+. .|+.
T Consensus 300 ~~--~~~~ 305 (359)
T 3ieg_A 300 QM--EPDN 305 (359)
T ss_dssp HH--CTTC
T ss_pred Hh--Cccc
Confidence 64 4543
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=3.5e-11 Score=111.02 Aligned_cols=201 Identities=10% Similarity=0.007 Sum_probs=171.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHH
Q 038373 129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYA 205 (475)
Q Consensus 129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~ 205 (475)
..|..+...+...|++++|.+.++.+.+.. ..+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 457777778889999999999999998875 55788999999999999999999999998763 36789999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 038373 206 ANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A 284 (475)
..|++++|+++|+++...+..| +...+..+...+...|++++|...++...+. . ..+...+..+...|.+.|+.++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998854556 4567888889999999999999999998843 2 22577889999999999999999
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373 285 EEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI 332 (475)
Q Consensus 285 ~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~ 332 (475)
.++|++. .. ..+...|..+...+...|+.+.|.+.++.+.++.|+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999988 32 346777888888999999999999999888888776643
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=6.4e-11 Score=106.66 Aligned_cols=201 Identities=12% Similarity=-0.023 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHH
Q 038373 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGY 204 (475)
Q Consensus 128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~ 204 (475)
...+..+...+...|++++|.+.++.+.+.. ..+..++..+...|.+.|++++|.+.|++..+ .+..+|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4567888889999999999999999998865 45688999999999999999999999998763 3677999999999
Q ss_pred Hhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCH
Q 038373 205 AAN-GQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHL 281 (475)
Q Consensus 205 ~~~-g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~ 281 (475)
... |++++|++.|+++.+.+..|+ ...+..+...+...|++++|...++.+.+. .| +...+..+...|.+.|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCH
Confidence 999 999999999999988444454 567888999999999999999999998843 33 477889999999999999
Q ss_pred HHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373 282 IEAEEFVERM-PFE--PTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI 332 (475)
Q Consensus 282 ~~A~~~~~~m-~~~--p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~ 332 (475)
++|.++|++. ... .+...|..+...+...|+.+.+....+.+.+..|+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 9999999987 222 46777888888889999999888888888777776643
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.40 E-value=3.3e-11 Score=109.44 Aligned_cols=193 Identities=12% Similarity=-0.008 Sum_probs=151.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
++...|..+-..+.+.|++++|+..|++.....| +...+..+-.++.+.|++++|...++...+.. +.+...+..+-.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 4556778888889999999999999998777665 45668888888999999999999999998875 456788899999
Q ss_pred HHHHc-----------CCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 172 MYGKC-----------CNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFA 237 (475)
Q Consensus 172 ~~~k~-----------g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~ 237 (475)
.|.+. |++++|...|++..+ | +...|..+-..|...|++++|+..|++..+.. .+...+..+-.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 99999 999999999988763 4 56788889999999999999999999998877 68888899999
Q ss_pred HHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 238 ACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 238 ~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.+...|++++|...|+...+ ..| +...+..+...|.+.|+.++|.+.|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999998874 344 4677888888999999999999888764
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.39 E-value=2.7e-11 Score=115.35 Aligned_cols=217 Identities=11% Similarity=0.022 Sum_probs=177.2
Q ss_pred HHHHHHcCChHHHHHHHHhcccCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 038373 102 LLSLCKEGKVREAIEYMGQDASASAGY--DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT 179 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~ 179 (475)
|+..-..|++.+|+..++......|+. .....+..++...|+++.|...++. . -.|+..++..+...|.+.|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 445667899999999998766655654 2456678899999999999876644 2 367888999999999999999
Q ss_pred HHHHHHHHhcc----cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038373 180 RLARKVFDQLR----KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEI 254 (475)
Q Consensus 180 ~~A~~~f~~m~----~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~ 254 (475)
++|.+.|+++. .| +...|..+-..|...|++++|++.|++ ..+...+..+...+.+.|+.++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999874 25 556777777999999999999999987 46788999999999999999999999999
Q ss_pred HhhhCCCcCCHHH---HHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCC
Q 038373 255 MKNDYGIVPGIEH---YIAIIKVLGSAGHLIEAEEFVERM--PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPS 329 (475)
Q Consensus 255 m~~~~g~~p~~~~---y~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~ 329 (475)
+.+. .|+... ..+++..+...|++++|.++|+++ ....+...|+.+..++.+.|++++|+..++...+..|+
T Consensus 156 ~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9843 466432 233445556669999999999999 23458889999999999999999999999998888887
Q ss_pred Ch
Q 038373 330 KA 331 (475)
Q Consensus 330 ~~ 331 (475)
..
T Consensus 233 ~~ 234 (291)
T 3mkr_A 233 HP 234 (291)
T ss_dssp CH
T ss_pred CH
Confidence 65
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=2.3e-11 Score=111.26 Aligned_cols=196 Identities=9% Similarity=0.008 Sum_probs=143.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
......|..+...+.+.|++++|..+|++.....| +...+..+...+...|++++|.+.++.+.+.. ..+..++..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 35566777888889999999999999998776554 56678888888999999999999999988775 45788888999
Q ss_pred HHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE 247 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~ 247 (475)
..|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|+..+++..+.. ..+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987753 367788889999999999999999999888753 2367788888888899999999
Q ss_pred HHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 248 GFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 248 a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
|...++...+. . ..+..++..+...|.+.|+.++|.+.|++.
T Consensus 178 A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 178 ALSQFAAVTEQ-D-PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHh-C-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999888743 2 234667888888899999999999888887
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=5.1e-11 Score=111.11 Aligned_cols=217 Identities=9% Similarity=-0.099 Sum_probs=172.9
Q ss_pred cCChHHHHHHHHhcccCC----C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373 108 EGKVREAIEYMGQDASAS----A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~----p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A 182 (475)
.|++++|++.|++..... | +..+|..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 477899999998876642 1 34568888888999999999999999998875 45788999999999999999999
Q ss_pred HHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC
Q 038373 183 RKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDY 259 (475)
Q Consensus 183 ~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 259 (475)
.+.|++..+ | +..+|..+...|.+.|++++|.+.|+++.+. .|+...+...+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999998764 3 6789999999999999999999999999874 465555555666667789999999999877743
Q ss_pred CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 260 GIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-----VEVWEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 260 g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
..++...+ .++..+...++.++|.+.+++. ...|+ ...|..+...|...|+.+.|...++...++.|..
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 23343334 4777788888889999999887 33332 5778888889999999988888888887777654
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=3.5e-11 Score=110.86 Aligned_cols=222 Identities=9% Similarity=-0.038 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSA--FVKD----VELNNK 168 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~~ 168 (475)
...|..+-..+.+.|++++|++.|++......+..+|..+..++...|++++|.+.+....+.. ..++ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4578888889999999999999998865433677889999999999999999999999987753 1222 588999
Q ss_pred HHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 038373 169 LIEMYGKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAV 245 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~ 245 (475)
+...|.+.|++++|...|++..+ ++. ..+.+.|++++|.+.++++... .| +...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 99999999999999999998764 442 3467778899999999998874 34 456788888999999999
Q ss_pred HHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 246 KEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 246 ~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
++|...++...+. . ..+...|..+...|.+.|++++|.+.|++. .. ..+...|..+...+...|+.+.|.+.++..
T Consensus 156 ~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKR-A-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998843 2 235778899999999999999999999988 22 345788888999999999998888888777
Q ss_pred hccC
Q 038373 324 GDLD 327 (475)
Q Consensus 324 ~~~~ 327 (475)
.++.
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6665
No 35
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.36 E-value=1.8e-10 Score=118.50 Aligned_cols=234 Identities=9% Similarity=-0.005 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
.+|..+-..+...|++++|.+.|++.....|+..+|..+...+...|++++|.+.+..+.+.. ..+..++..+...|.+
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 356777778899999999999999987777888889999999999999999999999998875 4578899999999999
Q ss_pred cCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373 176 CCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~ 252 (475)
.|++++|...|++..+ | +...|..+...|...|++++|++.|++..+.. ..+...+..+...+...|++++|...+
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999998763 3 56799999999999999999999999998864 235678889999999999999999999
Q ss_pred HHHhhhCCCcC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCchHH
Q 038373 253 EIMKNDYGIVP----GIEHYIAIIKVLGSA----------GHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVELE 316 (475)
Q Consensus 253 ~~m~~~~g~~p----~~~~y~~li~~~~~~----------g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~~a 316 (475)
+.+.+...-.+ ....+..+...|.+. |++++|.+.|++. .. ..+...|..+...|...|+.+.|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 98874311111 122244455677777 9999999999988 22 34678899999999999999999
Q ss_pred HHHHHHHhccCCCCh
Q 038373 317 DRAEELLGDLDPSKA 331 (475)
Q Consensus 317 ~~~~~~l~~~~~~~~ 331 (475)
.+.++...++.|...
T Consensus 482 ~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 482 IELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHC--CH
T ss_pred HHHHHHHHHhCCCcH
Confidence 888888887776553
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.34 E-value=6.1e-12 Score=124.30 Aligned_cols=210 Identities=10% Similarity=0.042 Sum_probs=112.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 89 LRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 89 ~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
....+|...|..++.++.+.|++++|...++...+..+++.+.+.++.+|++.|+++++.++++ .|+..+|+.
T Consensus 55 fika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~ 127 (449)
T 1b89_A 55 YIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 127 (449)
T ss_dssp ------------------------------------------------------CHHHHTTTTT-------CC-------
T ss_pred HHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHH
Confidence 3445788899999999999999999999777665555777889999999999999999998885 478889999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 038373 169 LIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a 248 (475)
+.+.|...|++++|...|..+ ..|.-|+.++.+.|++++|++.++++ -+..||..++.+|...|+++.|
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp ---------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 999999999999999999988 47999999999999999999999998 3789999999999999999999
Q ss_pred HHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 249 FLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFE-PTVEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 249 ~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
......+ ...|+ ....++..|.+.|++++|..+++.- +.+ .....|+-|--.|++.. .+...+.++.+
T Consensus 197 ~~~~l~L----~~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl~~~ 266 (449)
T 1b89_A 197 QMCGLHI----VVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF 266 (449)
T ss_dssp HHTTTTT----TTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHH----HhCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 6554432 23343 3457999999999999999999876 543 45778888888888764 43334444443
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.33 E-value=9.4e-11 Score=107.13 Aligned_cols=203 Identities=10% Similarity=0.029 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMIS 202 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~ 202 (475)
....+|..+-..+...|++++|..+++.+.+.. ..+..++..+...|.+.|++++|.+.|++..+ .+..+|..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 344567777888889999999999999998764 45788999999999999999999999998763 36789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHH
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLI 282 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~ 282 (475)
.|...|++++|++.|+++.+.. ..+...+..+...+...|++++|..+++.+.+. ...+...+..+...|.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998864 336778889999999999999999999998843 2235778899999999999999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373 283 EAEEFVERM-P-FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI 332 (475)
Q Consensus 283 ~A~~~~~~m-~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~ 332 (475)
+|.+.|++. . ...+..+|..+...|...|+.+.|.+.++...++.|+...
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence 999999987 2 2346788999999999999999999999988888777643
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.31 E-value=1.9e-10 Score=107.19 Aligned_cols=231 Identities=14% Similarity=0.051 Sum_probs=183.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYD-VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD--VELNNKLIEMYG 174 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~Li~~~~ 174 (475)
+...-..+.+.|++++|++.|++.....|+.. .+..+..++...|++++|.+.+....+.+-.++ ..+|..+...|.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455678899999999999998776565543 788888899999999999999999988542222 345889999999
Q ss_pred HcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 038373 175 KCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~ 250 (475)
+.|++++|...|++..+ .+..+|..+...|...|++++|++.|++..+. .| +...|..+...+-..+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998763 36679999999999999999999999998775 44 45566666624555569999999
Q ss_pred HHHHHhhhCCCcCC-HHHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHHcCCchHH
Q 038373 251 YFEIMKNDYGIVPG-IEHYIAIIKVLGSAGH---LIEAEEFVERM----PFEPT------VEVWEALRNFAQIHGDVELE 316 (475)
Q Consensus 251 ~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~t~~~li~~~~~~g~~~~a 316 (475)
.|+...+. .|+ ...+..+...+...|+ .++|...|++. ...|+ ...|..+-..|...|+.+.|
T Consensus 164 ~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 164 SFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999843 343 6677778888888888 77788887776 11244 25777788899999999999
Q ss_pred HHHHHHHhccCCCChhh
Q 038373 317 DRAEELLGDLDPSKAIV 333 (475)
Q Consensus 317 ~~~~~~l~~~~~~~~~~ 333 (475)
.+.++...++.|++...
T Consensus 241 ~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhcCccHHHH
Confidence 99999999898887643
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.30 E-value=1.3e-10 Score=108.36 Aligned_cols=218 Identities=9% Similarity=-0.109 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+...|..+...|.+.|++++|++.|++.....| +..+|..+...+...|++++|...++...+.. +.+..++..+...
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 567889999999999999999999998776555 57789999999999999999999999998874 4468899999999
Q ss_pred HHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRK--RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~--~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 250 (475)
|.+.|++++|...|+++.+ |+...+...+..+...|++++|...|++..... .++...+. ++..+...++.++|..
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLME 198 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHH
Confidence 9999999999999998863 555555555566677899999999998887653 34444444 6777788888999999
Q ss_pred HHHHHhhhCCCcCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 038373 251 YFEIMKNDYGIVPG-----IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRNFAQIHGDVELEDRA 319 (475)
Q Consensus 251 ~~~~m~~~~g~~p~-----~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~~g~~~~a~~~ 319 (475)
.+..... ..|+ ...|..+...|.+.|++++|.+.|++. ...|+. |.....++...|++++|.+.
T Consensus 199 ~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 199 RLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC---
T ss_pred HHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHH
Confidence 9988763 2332 577889999999999999999999988 555633 22223445566666544443
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=3.3e-09 Score=99.20 Aligned_cols=227 Identities=9% Similarity=-0.055 Sum_probs=190.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGN----LKSIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
-+..++..+-..|.+.|++++|++.|++.... -+..++..+-..+.. .+++++|...|+...+.+ +...+..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 35667788888899999999999999987662 245667778788888 999999999999999887 7888999
Q ss_pred HHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 169 LIEMYGK----CCNTRLARKVFDQLRKR-NLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239 (475)
Q Consensus 169 Li~~~~k----~g~~~~A~~~f~~m~~~-~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~ 239 (475)
|-..|.+ .++.++|...|++..+. +..+|..+-..|.. .|++++|++.|++..+.+ +...+..+-..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 9999999 99999999999987654 67789999999999 999999999999999876 567777787788
Q ss_pred Hc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH-
Q 038373 240 AS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERM-PFEPTVEVWEALRNFAQI- 309 (475)
Q Consensus 240 ~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~t~~~li~~~~~- 309 (475)
.. .++.++|...++...+. + +...+..+-..|.+ .|+.++|.+.|++. .. .+...+..|-..|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcC
Confidence 77 99999999999998843 3 45677888888999 99999999999987 32 346777778788888
Q ss_pred ---cCCchHHHHHHHHHhccCCCCh
Q 038373 310 ---HGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 310 ---~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
.++.++|.+.++...++.+...
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHH
Confidence 8999888888888777766544
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.24 E-value=5.6e-10 Score=101.17 Aligned_cols=191 Identities=16% Similarity=0.022 Sum_probs=154.1
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMIS 202 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~ 202 (475)
++...+..+-..+.+.|++++|...++...+.. +.+...+..+-..|.+.|++++|...|++..+ | +...|..+-.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 455677888888999999999999999998875 56788999999999999999999999998763 4 6679999999
Q ss_pred HHHhc-----------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHH
Q 038373 203 GYAAN-----------GQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIA 270 (475)
Q Consensus 203 ~~~~~-----------g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~ 270 (475)
.|.+. |++++|+..|++..+. .| +...+..+-..+...|++++|...|++..+. . .+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~ 156 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHH
Confidence 99999 9999999999999875 45 5678888999999999999999999999854 5 67888999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 038373 271 IIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELEDRAEEL 322 (475)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~ 322 (475)
+-..|...|++++|.+.|++. ...| +...+..+...+...|+.++|...++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999988 3334 677888888888889999666555443
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.23 E-value=3.8e-10 Score=103.84 Aligned_cols=189 Identities=10% Similarity=-0.056 Sum_probs=161.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C-------HHHHH
Q 038373 129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N-------LSSWH 198 (475)
Q Consensus 129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~-------~~tyn 198 (475)
.+|..+-..+...|++++|..++....+.. .+..++..+..+|.+.|++++|...|++..+ | + ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 467778888999999999999999999887 8889999999999999999999999998763 2 2 57999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHh
Q 038373 199 LMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGS 277 (475)
Q Consensus 199 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~ 277 (475)
.+...|...|++++|++.|++.... .|+. ..+.+.|++++|...++.+.. ..| +...|..+...|.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999884 4553 346677899999999999883 233 46678899999999
Q ss_pred cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 278 AGHLIEAEEFVERM-P-FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 278 ~g~~~~A~~~~~~m-~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
.|++++|.+.|++. . ...+...|..+...+...|+++.|...++...++.|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 207 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 207 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHH
Confidence 99999999999988 2 234688899999999999999999988888877776653
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.21 E-value=5.5e-10 Score=110.37 Aligned_cols=232 Identities=10% Similarity=0.037 Sum_probs=189.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKS-IEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
+...|+.+-..+.+.|++++|++.|++.....|+ ..+|+.+-.++...|+ +++|...+++..+.. .-+..+|+.+-.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3457888888899999999999999997776665 4568888889999996 999999999999876 457889999999
Q ss_pred HHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS-AEAVKE 247 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~-~g~~~~ 247 (475)
+|.+.|++++|...|++..+ .+...|+.+-..|.+.|++++|+..|+++.+.... +...|+.+-.++.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998864 37889999999999999999999999999986432 67889999999988 666577
Q ss_pred H-----HHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-------
Q 038373 248 G-----FLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAG--HLIEAEEFVERMPFEP-TVEVWEALRNFAQIHG------- 311 (475)
Q Consensus 248 a-----~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~t~~~li~~~~~~g------- 311 (475)
| ...++.... +.| +...|+.+-..|.+.| +.++|.+.+.++...| +...+..|...|.+.|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 477777763 455 4678888888899988 6899999998874344 5677888888888864
Q ss_pred --CchHHHHHHHHH-hccCCCC
Q 038373 312 --DVELEDRAEELL-GDLDPSK 330 (475)
Q Consensus 312 --~~~~a~~~~~~l-~~~~~~~ 330 (475)
..+.|.++++.+ .++.|..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHHHHhCchh
Confidence 246677777777 6665544
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=9.1e-11 Score=111.30 Aligned_cols=236 Identities=10% Similarity=0.024 Sum_probs=168.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhccc--------CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDAS--------ASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS------ 157 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~--------~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------ 157 (475)
.+..+|..+...|...|++++|+.+|++... ..| ...++..+...+...|++++|...+.+..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3466889999999999999999999987554 122 3345788888999999999999999988764
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 038373 158 AF-VKDVELNNKLIEMYGKCCNTRLARKVFDQLRK----------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT-- 223 (475)
Q Consensus 158 g~-~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~----------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~-- 223 (475)
+- .....++..+...|...|++++|...|++..+ + ...+|+.+...|...|++++|+++|++..+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22 23467888999999999999999999987752 1 3457889999999999999999999998774
Q ss_pred ----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhC------CCcCC-------HHHHHHHHHHHHhcCCHHHHH
Q 038373 224 ----GPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDY------GIVPG-------IEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 224 ----g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~------g~~p~-------~~~y~~li~~~~~~g~~~~A~ 285 (475)
+-.|+ ..++..+...+...|++++|...++.+.+.. ...+. ...+..+...+...+.+.+|.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 22343 3478889999999999999999999887420 11111 222334444555566666677
Q ss_pred HHHHhCC-CC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCC
Q 038373 286 EFVERMP-FE-PTVEVWEALRNFAQIHGDVELEDRAEELLGDLDP 328 (475)
Q Consensus 286 ~~~~~m~-~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~ 328 (475)
..+.... .. .+..+|..+...|.+.|+.++|.+.++...++.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 265 GWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 7777662 22 3456788888999999999888888777665543
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=1.3e-08 Score=97.30 Aligned_cols=232 Identities=11% Similarity=0.081 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHc----CCh----HHHHHHHHhcccCCC-CHHHHHHHHHHHh-------ccCCH-------HHHHHHH
Q 038373 95 LESLDVNLLSLCKE----GKV----REAIEYMGQDASASA-GYDVFSSLLDSCG-------NLKSI-------EMGKRVH 151 (475)
Q Consensus 95 ~~~~n~li~~~~~~----g~~----~~A~~l~~~~~~~~p-~~~t~~~ll~~~~-------~~~~~-------~~a~~~~ 151 (475)
...|...|.---+. ++. ++|..+|++.....| +...|..+...+. +.|++ ++|..+|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 34566666543332 233 688889988665444 5556776666654 35886 8999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373 152 ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLS-SWHLMISGYAANGQGADGLMLFEQMRKTGPHP 227 (475)
Q Consensus 152 ~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~-tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 227 (475)
++..+.--.-+...|..+...+.+.|++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|++..+... +
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~ 166 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T 166 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-C
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-C
Confidence 9998732144677999999999999999999999998764 4 343 899999999999999999999999987542 3
Q ss_pred CHHHHHHHHHHH-HccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHH
Q 038373 228 DKETFLVVFAAC-ASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-P---FEP--TVEV 299 (475)
Q Consensus 228 d~~t~~~li~~~-~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~t 299 (475)
+...|....... ...|+.++|..+|+...+. .| +...|..++..+.+.|++++|..+|++. . +.| ....
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 344454333332 2379999999999998843 23 5678899999999999999999999988 2 344 4778
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhccCCCC
Q 038373 300 WEALRNFAQIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
|..++....+.|+.+.|..+++...+..|+.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 9999999999999999988888888777764
No 46
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.10 E-value=2.1e-08 Score=86.79 Aligned_cols=160 Identities=14% Similarity=0.068 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~ 173 (475)
...|..+...+.+.|++++|.+.|++.....| +..++..+...+...|++++|...++.+.+.. ..+..++..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567777788888999999999988776554 55667778888888888888888888887764 44677777888888
Q ss_pred HHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373 174 GKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 250 (475)
.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|++..+.. ..+..++..+...+...|++++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888877653 356677777778888888888888888777653 2356677777777777888888887
Q ss_pred HHHHHh
Q 038373 251 YFEIMK 256 (475)
Q Consensus 251 ~~~~m~ 256 (475)
.++...
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.08 E-value=4.4e-09 Score=97.79 Aligned_cols=205 Identities=11% Similarity=0.015 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
...|..+...|.+.|++++|++.|++.....++ ..+|..+-..+...|++++|.+.++...+.. +.+..++..+.
T Consensus 37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 115 (272)
T 3u4t_A 37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIG 115 (272)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 346788888999999999999999986663322 3348888899999999999999999998865 45678999999
Q ss_pred HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC--
Q 038373 171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEA-- 244 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~-- 244 (475)
..|.+.|++++|...|++..+ | +...|..+...+...+++++|++.|++..+. .|+ ...+..+...+...|+
T Consensus 116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~ 193 (272)
T 3u4t_A 116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDT 193 (272)
T ss_dssp HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcch
Confidence 999999999999999998874 3 5668888773444456999999999999885 344 6677778888888888
Q ss_pred -HHHHHHHHHHHhhhCCCcCC------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 038373 245 -VKEGFLYFEIMKNDYGIVPG------IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT-VEVWEA 302 (475)
Q Consensus 245 -~~~a~~~~~~m~~~~g~~p~------~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~t~~~ 302 (475)
.++|...++...+...-.|+ ...|..+-..|.+.|++++|.+.|++. .+.|+ ...+..
T Consensus 194 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp SSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 77888888877744333344 257888899999999999999999988 33443 344433
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.06 E-value=1.6e-08 Score=88.35 Aligned_cols=157 Identities=10% Similarity=-0.043 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
.|..+=..|.+.|++++|++.|++.....| +..++..+-.++.+.|++++|...+....... ..+...+..+...+.+
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHH
Confidence 334444444444444444444443332222 22233333344444444444444444433332 2223333333334444
Q ss_pred cCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373 176 CCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~ 252 (475)
.++.+.|...+++..+ .+...|..+-..|.+.|++++|++.|++..+.. .-+..+|..+-..+.+.|++++|.+.|
T Consensus 86 ~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 4444444444433221 123334444444444444444444444433321 012233333334444444444444444
Q ss_pred HHH
Q 038373 253 EIM 255 (475)
Q Consensus 253 ~~m 255 (475)
++.
T Consensus 165 ~~a 167 (184)
T 3vtx_A 165 KKA 167 (184)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 49
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.06 E-value=6.9e-09 Score=105.73 Aligned_cols=202 Identities=10% Similarity=-0.020 Sum_probs=167.1
Q ss_pred hHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 038373 111 VREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSI-EMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQ 188 (475)
Q Consensus 111 ~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~ 188 (475)
++++++.+++.....| +...+..+-.++...|++ ++|.+.|++..+.. ..+..+|..|-..|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566666766555444 667788888899999999 99999999998875 45688999999999999999999999998
Q ss_pred cc--cCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CCHHHHH
Q 038373 189 LR--KRNLSSWHLMISGYAAN---------GQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA--------EAVKEGF 249 (475)
Q Consensus 189 m~--~~~~~tyn~li~~~~~~---------g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~--------g~~~~a~ 249 (475)
.. .|+...|..+-..|... |++++|++.|++..+.. .-+...|..+-.++... |++++|.
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 76 47778999999999999 99999999999998853 22577889999999888 9999999
Q ss_pred HHHHHHhhhCCCcC----CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCchHHH
Q 038373 250 LYFEIMKNDYGIVP----GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHGDVELED 317 (475)
Q Consensus 250 ~~~~~m~~~~g~~p----~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g~~~~a~ 317 (475)
..|+...+. .| +...|..+-..|.+.|++++|.+.|++. ...| +...|..+-..+...|+.++|.
T Consensus 242 ~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 242 SAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998842 44 6788999999999999999999999987 3333 5667888888888888775544
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=4.5e-08 Score=93.50 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=157.5
Q ss_pred CCHHHHHHHHHHHH-------HcCCh-------HHHHHHHHhccc-CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLC-------KEGKV-------REAIEYMGQDAS-ASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRT 156 (475)
Q Consensus 93 ~~~~~~n~li~~~~-------~~g~~-------~~A~~l~~~~~~-~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 156 (475)
.+...|..+...+. +.|++ ++|..+|++... ..|+. ..|..+...+.+.|++++|.++|+...+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 45667877777765 45886 999999999887 46754 4788999999999999999999999988
Q ss_pred cCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHH
Q 038373 157 SAFVKD-VE-LNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYA-ANGQGADGLMLFEQMRKTGPHPDKE 230 (475)
Q Consensus 157 ~g~~p~-~~-~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~-~~g~~~~A~~l~~~M~~~g~~pd~~ 230 (475)
. .|+ .. +|..+...+.+.|++++|..+|++..+ | +...|........ ..|+.++|..+|++..+.. .-+..
T Consensus 128 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 204 (308)
T 2ond_A 128 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPE 204 (308)
T ss_dssp S--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHH
T ss_pred c--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 5 443 33 899999999999999999999998764 2 3445544333322 3699999999999988742 22677
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 231 TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP--GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 231 t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.|..++..+.+.|++++|..+|+.......+.| ....|..++..+.+.|+.++|..+++++
T Consensus 205 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 205 YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999999999985323455 3668899999999999999999999987
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.04 E-value=1.9e-08 Score=87.89 Aligned_cols=170 Identities=11% Similarity=0.038 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMIS 202 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~ 202 (475)
-+...|..+-..+.+.|++++|.+.|++..+.. +-+..++..+..+|.+.|++++|...++.... .+...|..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 467789999999999999999999999998875 55788999999999999999999999998753 36678888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCH
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHL 281 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~ 281 (475)
.+...+++++|.+.+.+..... .-+...+..+-..+.+.|++++|.+.|+...+. .| +...|..+-..|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCH
Confidence 9999999999999999988753 235778888999999999999999999998843 34 567889999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHH
Q 038373 282 IEAEEFVERM-PFEPTVEVW 300 (475)
Q Consensus 282 ~~A~~~~~~m-~~~p~~~t~ 300 (475)
++|.+.|++. ...|+...|
T Consensus 158 ~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp HHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHhCCccCHHH
Confidence 9999999987 555655443
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.04 E-value=2.3e-08 Score=86.48 Aligned_cols=162 Identities=12% Similarity=-0.018 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~ 241 (475)
.+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|.+.|++..+.. ..+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 445555566666666666666665543 245566666666666666666666666665542 2245556666666666
Q ss_pred cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 038373 242 AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-P-FEPTVEVWEALRNFAQIHGDVELEDRA 319 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~t~~~li~~~~~~g~~~~a~~~ 319 (475)
.|++++|.+.++.+.+. ...+...+..+...|.+.|++++|.++|++. . ...+...|..+...+...|+.+.|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666532 1224455566666666666666666666665 1 123455666666666666666666666
Q ss_pred HHHHhccCCC
Q 038373 320 EELLGDLDPS 329 (475)
Q Consensus 320 ~~~l~~~~~~ 329 (475)
++...++.|+
T Consensus 167 ~~~~~~~~~~ 176 (186)
T 3as5_A 167 FKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHcCCC
Confidence 5555544433
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.00 E-value=3.7e-09 Score=104.82 Aligned_cols=232 Identities=10% Similarity=-0.003 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGY-----DVFSSLLDSCGNLKSIEMGKRVHELLRTS----AF-VKDVE 164 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~ 164 (475)
...+..+-..+.+.|++++|+..|++.....|+. ..|..+-..+...|++++|.+.+++..+. +- .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 4455566667899999999999999876655543 36788888899999999999999988654 21 23456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccC---------CHHHHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKR---------NLSSWHLMISGYAANGQ-----------------GADGLMLFE 218 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~---------~~~tyn~li~~~~~~g~-----------------~~~A~~l~~ 218 (475)
++..+...|...|++++|...|++..+- ...+|+.+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888899999999999999999876521 24488999999999999 999999998
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038373 219 QMRKT----GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG----IEHYIAIIKVLGSAGHLIEAEEFVE 289 (475)
Q Consensus 219 ~M~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~~~~ 289 (475)
+..+. +-.| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.|+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 86542 2222 2347888888999999999999999887632111112 2378889999999999999999998
Q ss_pred hC-CC---CC----CHHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 290 RM-PF---EP----TVEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 290 ~m-~~---~p----~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
+. .. .. ...+|..+...|...|+.+.|...++...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 76 11 11 2567778888999999998887776665443
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.00 E-value=1.8e-07 Score=87.24 Aligned_cols=188 Identities=9% Similarity=-0.046 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHH
Q 038373 93 AQLESLDVNLLSLCK----EGKVREAIEYMGQDASASAGYDVFSSLLDSCGN----LKSIEMGKRVHELLRTSAFVKDVE 164 (475)
Q Consensus 93 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ 164 (475)
.+...+..+-..|.+ .|++++|++.|++....+ +...+..+-..+.. .+++++|.+.++...+.+ +..
T Consensus 36 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 111 (273)
T 1ouv_A 36 KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAE 111 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---Ccc
Confidence 345678888888999 999999999999876654 67788888888888 999999999999999876 788
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373 165 LNNKLIEMYGK----CCNTRLARKVFDQLRKR-NLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVV 235 (475)
Q Consensus 165 ~~~~Li~~~~k----~g~~~~A~~~f~~m~~~-~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~l 235 (475)
.+..|-..|.+ .|+.++|...|++..+. +...+..+-..|.. .+++++|+..|++..+.+ +...+..+
T Consensus 112 a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 188 (273)
T 1ouv_A 112 GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNA 188 (273)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 99999999999 99999999999987654 66788888888988 999999999999998865 56778888
Q ss_pred HHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 038373 236 FAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERM 291 (475)
Q Consensus 236 i~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m 291 (475)
-..+.. .+++++|...++...+. + +...+..|-..|.+ .|+.++|.+.|++.
T Consensus 189 g~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 189 GNMYHHGEGATKNFKEALARYSKACEL-E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248 (273)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 888888 99999999999998843 3 25667788888888 99999999999876
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.00 E-value=6.8e-09 Score=98.85 Aligned_cols=231 Identities=13% Similarity=0.039 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFV-KDVEL 165 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~ 165 (475)
..+...-..+.+.|++++|...|++.....|+ ...+..+...+...|++++|.+.+....+. +-. ....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34555566788999999999999987665554 356788888999999999999999887543 222 23567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQ--------------------GADGLML 216 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~--------------------~~~A~~l 216 (475)
+..+...|...|++++|...|++..+ .+ ..+|..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88889999999999999999987642 22 3488899999999999 9999999
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 038373 217 FEQMRKT----GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG----IEHYIAIIKVLGSAGHLIEAEEF 287 (475)
Q Consensus 217 ~~~M~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~~ 287 (475)
+++.... +-.| ...++..+...+...|++++|...++...+...-.++ ..++..+...|.+.|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9886542 2222 2347788888899999999999999887632111112 34788888999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 288 VERM----PFEPT----VEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 288 ~~~m----~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
+++. +...+ ..++..+...+...|+.+.|...++...++
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9876 11122 567777888899999998887776655443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.00 E-value=1.2e-08 Score=100.54 Aligned_cols=235 Identities=13% Similarity=0.035 Sum_probs=179.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK- 161 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p- 161 (475)
......+...-..+.+.|++++|...|++.....|+ ...|..+-..+...|++++|...++...+. +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 355667777778899999999999999987665554 246778888999999999999999887543 2222
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCC--------------------hHH
Q 038373 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQ--------------------GAD 212 (475)
Q Consensus 162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~--------------------~~~ 212 (475)
...++..+...|...|++++|...|++..+ .+ ..+|+.+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 256788888999999999999999987653 23 4489999999999999 999
Q ss_pred HHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC----HHHHHHHHHHHHhcCCHHH
Q 038373 213 GLMLFEQMRKT----GPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG----IEHYIAIIKVLGSAGHLIE 283 (475)
Q Consensus 213 A~~l~~~M~~~----g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~y~~li~~~~~~g~~~~ 283 (475)
|++.+++.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ..+|..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999886542 21222 347888888999999999999999887632111122 3478889999999999999
Q ss_pred HHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 284 AEEFVERM----PFEPT----VEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 284 A~~~~~~m----~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
|.+.+++. +-.++ ..+|..+-..|...|+++.|.+.++...++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999876 11122 567778888999999998887776665443
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.99 E-value=8e-09 Score=105.25 Aligned_cols=192 Identities=12% Similarity=0.019 Sum_probs=168.1
Q ss_pred CCHHHHHHHHHHHHHcCCh-HHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKV-REAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~-~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
.+...|..+-..|...|++ ++|++.|++.....|+ ...|..+-.++.+.|++++|.+.|+...+. .|+..++..|-
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 4677888888899999999 9999999987765554 678999999999999999999999999876 47789999999
Q ss_pred HHHHHc---------CCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCC---
Q 038373 171 EMYGKC---------CNTRLARKVFDQLRK--R-NLSSWHLMISGYAAN--------GQGADGLMLFEQMRKTGPHP--- 227 (475)
Q Consensus 171 ~~~~k~---------g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~--------g~~~~A~~l~~~M~~~g~~p--- 227 (475)
..|.+. |++++|...|++..+ | +...|..+...|... |++++|++.|++..+. .|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcc
Confidence 999999 999999999998763 3 678999999999999 9999999999999885 45
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 228 -DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 228 -d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+...|..+-.++...|++++|.+.|++..+. .| +...+..+-..+...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7889999999999999999999999998843 44 4567888889999999999999887766
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.95 E-value=7.2e-09 Score=102.68 Aligned_cols=232 Identities=10% Similarity=-0.035 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccC----C---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASA----S---AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AF-VKDV 163 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~----~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~ 163 (475)
..|..+-..|...|++++|++.|++.... + ....++..+-..+...|++++|...+.+..+. +- ....
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 47888888999999999999999875431 1 23345778888899999999999999987654 21 2235
Q ss_pred HHHHHHHHHHHHcCC-----------------HHHHHHHHHhccc-----C----CHHHHHHHHHHHHhcCChHHHHHHH
Q 038373 164 ELNNKLIEMYGKCCN-----------------TRLARKVFDQLRK-----R----NLSSWHLMISGYAANGQGADGLMLF 217 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~-----------------~~~A~~~f~~m~~-----~----~~~tyn~li~~~~~~g~~~~A~~l~ 217 (475)
.++..+...|...|+ +++|.+.|++..+ . ...+|..+...|...|++++|++.|
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 578888999999999 9999999887542 1 2348889999999999999999999
Q ss_pred HHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhC---CCc-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038373 218 EQMRKTGP-HPD----KETFLVVFAACASAEAVKEGFLYFEIMKNDY---GIV-PGIEHYIAIIKVLGSAGHLIEAEEFV 288 (475)
Q Consensus 218 ~~M~~~g~-~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~---g~~-p~~~~y~~li~~~~~~g~~~~A~~~~ 288 (475)
++..+..- .++ ..++..+...+...|++++|...+++..... +-. ....++..+...|.+.|++++|.+.|
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 98765311 112 2378888999999999999999998876321 111 12567888999999999999999999
Q ss_pred HhC-CC---CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373 289 ERM-PF---EPT----VEVWEALRNFAQIHGDVELEDRAEELLGDLD 327 (475)
Q Consensus 289 ~~m-~~---~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~ 327 (475)
++. .+ .++ ..+|..+...|...|+.+.|.+.++...++.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 887 11 112 3467778889999999988887777766553
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.94 E-value=1.8e-08 Score=95.81 Aligned_cols=233 Identities=9% Similarity=-0.020 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccC----C--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASA----S--A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VKD---- 162 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~----~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~---- 162 (475)
...|..+...|...|++++|.+.|++.... + | ...++..+-..+...|++++|...+.+..+..- .++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 457888889999999999999998864331 1 1 234577888889999999999999988765311 122
Q ss_pred HHHHHHHHHHHHHcCC--------------------HHHHHHHHHhccc-----C----CHHHHHHHHHHHHhcCChHHH
Q 038373 163 VELNNKLIEMYGKCCN--------------------TRLARKVFDQLRK-----R----NLSSWHLMISGYAANGQGADG 213 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~--------------------~~~A~~~f~~m~~-----~----~~~tyn~li~~~~~~g~~~~A 213 (475)
..++..+...|...|+ +++|.+.|++..+ . ...+|..+...|...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4478888999999999 9999999887542 1 234788899999999999999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC----HHHHHHHHHHHHhcCCHHHH
Q 038373 214 LMLFEQMRKT----GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG----IEHYIAIIKVLGSAGHLIEA 284 (475)
Q Consensus 214 ~~l~~~M~~~----g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~y~~li~~~~~~g~~~~A 284 (475)
.+.+++..+. +..+ ...++..+...+...|++++|...++...+...-..+ ..++..+...|.+.|++++|
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999987652 1111 1337888889999999999999999887632111111 55778888999999999999
Q ss_pred HHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373 285 EEFVERM-PF---EPT----VEVWEALRNFAQIHGDVELEDRAEELLGDLD 327 (475)
Q Consensus 285 ~~~~~~m-~~---~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~ 327 (475)
.+.+++. .. ..+ ..+|..+...|...|+.+.|.+.++...++.
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9999876 11 112 4467778889999999988888777765543
No 60
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.88 E-value=1.3e-07 Score=97.56 Aligned_cols=231 Identities=11% Similarity=0.074 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHc----CCh----HHHHHHHHhcccCCC-CHHHHHHHHHHHhc-------cCCHH-------HHHHHH
Q 038373 95 LESLDVNLLSLCKE----GKV----REAIEYMGQDASASA-GYDVFSSLLDSCGN-------LKSIE-------MGKRVH 151 (475)
Q Consensus 95 ~~~~n~li~~~~~~----g~~----~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~-------~~~~~-------~a~~~~ 151 (475)
...|...+.-.-.. ++. .+|..+|++.....| +...|......+.+ .|+++ +|..++
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 35676666443332 222 377788887665334 55667777666654 68987 899999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373 152 ELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NL-SSWHLMISGYAANGQGADGLMLFEQMRKTGPHP 227 (475)
Q Consensus 152 ~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 227 (475)
+...+.-.+.+...+..++..+.+.|++++|..+|++..+ | +. ..|..++..+.+.|+.++|.++|++..+..- .
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~ 388 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-T 388 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-C
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-C
Confidence 9988632344688999999999999999999999998763 4 33 5899999999999999999999999887521 1
Q ss_pred CHHHHHHHHH-HHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--HHH
Q 038373 228 DKETFLVVFA-ACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM----PFEPT--VEV 299 (475)
Q Consensus 228 d~~t~~~li~-~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~t 299 (475)
+...|..... .+...|+.++|..+|+...+. .| +...|..+++.+.+.|+.++|..+|++. +..|+ ...
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 2233322222 233689999999999988744 34 4778999999999999999999999987 22332 568
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhccCCC
Q 038373 300 WEALRNFAQIHGDVELEDRAEELLGDLDPS 329 (475)
Q Consensus 300 ~~~li~~~~~~g~~~~a~~~~~~l~~~~~~ 329 (475)
|...+......|+.+.+..+.+...+..|+
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999988888888776663
No 61
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=9.1e-08 Score=77.77 Aligned_cols=124 Identities=14% Similarity=0.119 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
|..+...+.+.|++++|+.+|+++....| +...+..+...+...|++++|..+++.+.+.+ ..+..++..+...|.+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 44555555555666666665555433222 33444455555555555555555555554443 23344444555555555
Q ss_pred CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 177 CNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 177 g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
|++++|.++|+++.+ .+..+|..+...|.+.|++++|...|+++..
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555544432 1334444455555555555555555544443
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.86 E-value=5e-07 Score=99.68 Aligned_cols=208 Identities=11% Similarity=0.019 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
-+..+|..+-.++.+.|++++|.+-|.+. -|...|.-++.+|.+.|++++|.+.+...++.. ++....+.++.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence 34567777778888888888888888654 355677778888888888888888888776653 444455568888
Q ss_pred HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~ 252 (475)
|+|.+++++..... ..++...|..+-..|...|++++|..+|... ..|..+...+++.|++++|.+.+
T Consensus 1177 YAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1177 LAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888644442 4556667777777788888888888888773 37788888888888888888777
Q ss_pred HHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccC
Q 038373 253 EIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLD 327 (475)
Q Consensus 253 ~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~ 327 (475)
+... +..+|..+-.+|...|++..|......+ .-+...+..++..|.+.|.+++|...++.-..++
T Consensus 1245 rKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1245 RKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 6553 2344444444455555555555444332 2233344455555555666655554444444444
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.85 E-value=3.6e-08 Score=96.94 Aligned_cols=232 Identities=9% Similarity=-0.049 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhccc----CC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDAS----AS--A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VKD---- 162 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~----~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~---- 162 (475)
...|..+...|...|++++|...|++... .+ | ...++..+-..+...|++++|...+....+..- .++
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 126 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch
Confidence 35788888899999999999999886432 11 2 134577788889999999999999988765310 112
Q ss_pred HHHHHHHHHHHHHcCC--------------------HHHHHHHHHhccc-----C----CHHHHHHHHHHHHhcCChHHH
Q 038373 163 VELNNKLIEMYGKCCN--------------------TRLARKVFDQLRK-----R----NLSSWHLMISGYAANGQGADG 213 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~--------------------~~~A~~~f~~m~~-----~----~~~tyn~li~~~~~~g~~~~A 213 (475)
..++..+...|...|+ +++|...|++..+ . ...+|+.+...|...|++++|
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 206 (406)
T 3sf4_A 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 206 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHH
Confidence 4588888999999999 9999999886542 1 234789999999999999999
Q ss_pred HHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcCC-HHHHHHHHHHHHhcCCHHHH
Q 038373 214 LMLFEQMRKTG-PHPD----KETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVPG-IEHYIAIIKVLGSAGHLIEA 284 (475)
Q Consensus 214 ~~l~~~M~~~g-~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~-~~~y~~li~~~~~~g~~~~A 284 (475)
++.|++..+.. -.++ ..+|..+...+...|++++|...++...+. .+-.+. ..++..+...|.+.|++++|
T Consensus 207 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 207 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999876521 1122 347888889999999999999999887632 111111 56788899999999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHhcc
Q 038373 285 EEFVERM----PFEPT----VEVWEALRNFAQIHGDVELEDRAEELLGDL 326 (475)
Q Consensus 285 ~~~~~~m----~~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~l~~~ 326 (475)
.+.|++. ...++ ..+|..+-..|...|+.+.|.+.++...++
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999876 11122 557777888999999998887776665443
No 64
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=9.5e-08 Score=88.62 Aligned_cols=214 Identities=9% Similarity=0.029 Sum_probs=141.5
Q ss_pred HHHHHHHHhcccCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CCC-CCHHHHHHHHHHHHHcCCHHHH
Q 038373 112 REAIEYMGQDASAS-A-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS------AFV-KDVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 112 ~~A~~l~~~~~~~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~-p~~~~~~~Li~~~~k~g~~~~A 182 (475)
++|++++.+..... | ...++..+-..+...|++++|...+.+..+. +-. ....+++.+...|...|++++|
T Consensus 25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 104 (283)
T 3edt_B 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence 44444444443211 2 2445788888889999999999999988764 222 2456788899999999999999
Q ss_pred HHHHHhccc----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCC
Q 038373 183 RKVFDQLRK----------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT------GPHP-DKETFLVVFAACASAEA 244 (475)
Q Consensus 183 ~~~f~~m~~----------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~t~~~li~~~~~~g~ 244 (475)
...|++..+ | ...+|..+...|...|++++|++.|++..+. +-.| +..++..+...+...|+
T Consensus 105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 184 (283)
T 3edt_B 105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK 184 (283)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 999987642 1 2458889999999999999999999998764 2233 34578888999999999
Q ss_pred HHHHHHHHHHHhhhC------CCcCCH-HHHHHHHHHHHhcCC------HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHH
Q 038373 245 VKEGFLYFEIMKNDY------GIVPGI-EHYIAIIKVLGSAGH------LIEAEEFVERMP-FEP-TVEVWEALRNFAQI 309 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~------g~~p~~-~~y~~li~~~~~~g~------~~~A~~~~~~m~-~~p-~~~t~~~li~~~~~ 309 (475)
+++|..++++..+.. ...+.. ..|..+...+...+. +.++...++..+ ..| ...+|..|...|..
T Consensus 185 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 185 YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999998877320 122222 223333333333222 344444555553 122 34567778889999
Q ss_pred cCCchHHHHHHHHHhc
Q 038373 310 HGDVELEDRAEELLGD 325 (475)
Q Consensus 310 ~g~~~~a~~~~~~l~~ 325 (475)
.|+.+.|...++...+
T Consensus 265 ~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 265 QGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999888777766544
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.83 E-value=1.1e-07 Score=101.36 Aligned_cols=160 Identities=8% Similarity=-0.021 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+..+|+.|-..|.+.|++++|++.|++.....|+ ..+|+.+-.++.+.|++++|.+.|++..+.. .-+...|+.|-.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3567888989999999999999999987765564 5678889999999999999999999998864 4467889999999
Q ss_pred HHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEG 248 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a 248 (475)
|.+.|++++|.+.|++..+ | +...|+.+-..|.+.|++++|++.|++..+. .| +...|..+...+...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999987653 4 6779999999999999999999999998874 45 466888999999999999998
Q ss_pred HHHHHHHh
Q 038373 249 FLYFEIMK 256 (475)
Q Consensus 249 ~~~~~~m~ 256 (475)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887665
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.83 E-value=1.5e-07 Score=92.66 Aligned_cols=224 Identities=8% Similarity=0.024 Sum_probs=171.1
Q ss_pred HHHHHcCChHHHHHHHHhcccC---CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc--CC----CCCHHHHHHH
Q 038373 103 LSLCKEGKVREAIEYMGQDASA---SAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTS--AF----VKDVELNNKL 169 (475)
Q Consensus 103 ~~~~~~g~~~~A~~l~~~~~~~---~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--g~----~p~~~~~~~L 169 (475)
..+...|++++|++.|++.... .+|. .+|..+-..+...|+++.|...+.+..+. .. .....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3467899999999999876542 2332 45788888899999999999999988763 11 1124578888
Q ss_pred HHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 038373 170 IEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHP-DKETFLVV 235 (475)
Q Consensus 170 i~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~t~~~l 235 (475)
-..|...|++++|...|++..+ .+ ..+|+.+-..|...|++++|++.|++..+. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 8999999999999999987652 22 248899999999999999999999998762 3323 45678899
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhC---CCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 038373 236 FAACASAEAVKEGFLYFEIMKNDY---GIVPGIEHYIAIIKVLGSAGH---LIEAEEFVERMPFEPTV-EVWEALRNFAQ 308 (475)
Q Consensus 236 i~~~~~~g~~~~a~~~~~~m~~~~---g~~p~~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~t~~~li~~~~ 308 (475)
-..+.+.|++++|...++...+-. +-......++.|-..|.+.|+ +++|..++++.+..|+. ..+..|-..|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999998876321 111123335678888889999 99999999999655544 35666778999
Q ss_pred HcCCchHHHHHHHHHhcc
Q 038373 309 IHGDVELEDRAEELLGDL 326 (475)
Q Consensus 309 ~~g~~~~a~~~~~~l~~~ 326 (475)
..|+.+.|...++...++
T Consensus 351 ~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999998887776665544
No 67
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.82 E-value=4.1e-08 Score=91.18 Aligned_cols=152 Identities=12% Similarity=0.079 Sum_probs=116.6
Q ss_pred ccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc----------C-CHHHHHHHH
Q 038373 140 NLKSIEMGKRVHELLRTS-------AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK----------R-NLSSWHLMI 201 (475)
Q Consensus 140 ~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~----------~-~~~tyn~li 201 (475)
..|++++|..++++..+. .......++..+...|...|++++|...|++..+ + ...+|+.+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555555555555432 2223467888999999999999999999987652 1 345899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC-----CCcC-CHHHH
Q 038373 202 SGYAANGQGADGLMLFEQMRKT------GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDY-----GIVP-GIEHY 268 (475)
Q Consensus 202 ~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~y 268 (475)
..|...|++++|++.|++.... .-.| ...+|..+...+...|++++|..++++..+.. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 1123 35678889999999999999999999887320 1123 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 038373 269 IAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~m 291 (475)
..+...|.+.|++++|.++|++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999999999999876
No 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.82 E-value=1.9e-07 Score=92.16 Aligned_cols=196 Identities=10% Similarity=0.011 Sum_probs=159.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHhccc--C-CHHHHHHHHHHH
Q 038373 129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN-TRLARKVFDQLRK--R-NLSSWHLMISGY 204 (475)
Q Consensus 129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~-~~~A~~~f~~m~~--~-~~~tyn~li~~~ 204 (475)
..|+.+-..+.+.|++++|.+.++..++.. .-+..+|+.+-..|.+.|+ +++|...|++..+ | +...|+.+-..|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 347777778889999999999999999875 4568899999999999997 9999999998864 3 778999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHh-cCCHH
Q 038373 205 AANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGS-AGHLI 282 (475)
Q Consensus 205 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~-~g~~~ 282 (475)
...|++++|+..|++..+... -+...|..+-.++.+.|++++|...++.+.+ +.| +...|+.+-..|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999998542 2678999999999999999999999999984 344 57788889899999 67768
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CchHHHHHHHHHhccCCCC
Q 038373 283 EA-----EEFVERM-PFEP-TVEVWEALRNFAQIHG--DVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 283 ~A-----~~~~~~m-~~~p-~~~t~~~li~~~~~~g--~~~~a~~~~~~l~~~~~~~ 330 (475)
+| .+.|++. .+.| +...|+.+...+...| +.+.|.+.++.+ +..++.
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~ 308 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS 308 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC
Confidence 87 4667666 3334 5778888888888877 576666666655 444444
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.80 E-value=1.9e-07 Score=99.54 Aligned_cols=160 Identities=9% Similarity=0.077 Sum_probs=139.2
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHH
Q 038373 126 AG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMI 201 (475)
Q Consensus 126 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li 201 (475)
|+ ..+|+.|-..+.+.|++++|.+.|++.++.. .-+..+|+.|-.+|.+.|++++|...|++..+ | +...|+.+-
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44 4568999999999999999999999998874 44688999999999999999999999998753 4 577999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcC
Q 038373 202 SGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAG 279 (475)
Q Consensus 202 ~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g 279 (475)
..|.+.|++++|++.|++..+. .| +...|+.+-..+.+.|++++|.+.|++..+ +.|+ ...|..|...|...|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcc
Confidence 9999999999999999998874 45 567899999999999999999999999883 4564 678899999999999
Q ss_pred CHHHHHHHHHhC
Q 038373 280 HLIEAEEFVERM 291 (475)
Q Consensus 280 ~~~~A~~~~~~m 291 (475)
++++|.+.+++.
T Consensus 160 ~~~~A~~~~~ka 171 (723)
T 4gyw_A 160 DWTDYDERMKKL 171 (723)
T ss_dssp CCTTHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999999888765
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=3.6e-07 Score=86.50 Aligned_cols=192 Identities=9% Similarity=-0.016 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhccc----CC-CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDAS----AS-AG--YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK-DVE 164 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~----~~-p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ 164 (475)
.|+.....|...|++++|.+.|.+... .+ |. ..+|+.+-.+|.+.|++++|...++...+. |-.. -..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566667777788888888887765332 11 11 345777777788888888888877776543 2100 134
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHhccc--C---C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----
Q 038373 165 LNNKLIEMYGKC-CNTRLARKVFDQLRK--R---N----LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK----- 229 (475)
Q Consensus 165 ~~~~Li~~~~k~-g~~~~A~~~f~~m~~--~---~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----- 229 (475)
+++.+-..|.+. |++++|...|++..+ | + ..+|+.+...|.+.|++++|+..|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 677777777775 888888877776542 1 1 346777777788888888888888777764322221
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHH------HHHHHHHHHH--hcCCHHHHHHHHHhC
Q 038373 230 -ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIE------HYIAIIKVLG--SAGHLIEAEEFVERM 291 (475)
Q Consensus 230 -~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~------~y~~li~~~~--~~g~~~~A~~~~~~m 291 (475)
.+|..+..++...|++++|...|+... .+.|+.. .+..|+..|. ..+++++|.+.|+++
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 145666667777788888888777765 2334321 2334455554 445677777777766
No 71
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.77 E-value=5.1e-07 Score=73.22 Aligned_cols=123 Identities=11% Similarity=0.091 Sum_probs=54.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcC
Q 038373 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANG 208 (475)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g 208 (475)
..+...+...|++++|..+++.+.+.. ..+..++..+...|.+.|++++|..+|+++.+ .+...|..+...|...|
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444455555555555544432 22344444444444444455555544444331 13334444444444444
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 209 QGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 209 ~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
++++|.++|+++.... ..+..++..+...+...|++++|...++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444322 1123344444444444444444444444443
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.73 E-value=2.7e-07 Score=86.98 Aligned_cols=164 Identities=12% Similarity=0.104 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-------C-
Q 038373 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTS-------AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-------R- 192 (475)
Q Consensus 128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-------~- 192 (475)
..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...|++..+ +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345788888899999999999999998873 2234567788899999999999999999987652 1
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhC---
Q 038373 193 ---NLSSWHLMISGYAANGQGADGLMLFEQMRKT------GPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDY--- 259 (475)
Q Consensus 193 ---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~------g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--- 259 (475)
...+|..+...|...|++++|.+.|++..+. +-.| ...++..+...+...|++++|.++++...+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 3458888999999999999999999988764 3233 34567888888899999999999988876320
Q ss_pred --CCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 260 --GIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 260 --g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+-.| ...++..+...|.+.|++++|.++|++.
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1123 3456778888899999999999888776
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.73 E-value=7.9e-07 Score=80.40 Aligned_cols=193 Identities=8% Similarity=-0.009 Sum_probs=146.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMIS 202 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~ 202 (475)
.|+..+...-..+...|++++|...|+...+..-.++...+..+..+|.+.|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466778888888899999999999999998876337788888899999999999999999998763 3 5568999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC---HHHHHHH
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHPD-K-------ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG---IEHYIAI 271 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~pd-~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~y~~l 271 (475)
.|...|++++|++.|++..+. .|+ . ..|..+-..+...|++++|.+.|+... ...|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 999999999999999998874 343 3 457777778889999999999999988 34565 4566677
Q ss_pred HHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 272 IKVLGSAGHLIEAEEFVERM---PFEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~m---~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
-..|...|+. +++++ + ..+...|..+.. ...+.++.|...++...++.|+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~ 214 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHH-----HHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCH
Confidence 7777665543 23332 2 234555555443 334567778888888888877764
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.73 E-value=1.1e-06 Score=79.40 Aligned_cols=196 Identities=8% Similarity=-0.028 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
.|...|..+-..+.+.|++++|++.|++..... ++...+..+-.++...|++++|.+.++...+.. +.+..++..+-
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 456778888888999999999999999866644 577777778888999999999999999998865 34677899999
Q ss_pred HHHHHcCCHHHHHHHHHhccc--C-CH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRK--R-NL-------SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD---KETFLVVFA 237 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~--~-~~-------~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd---~~t~~~li~ 237 (475)
..|.+.|++++|...|++..+ | +. ..|..+-..+...|++++|++.|++..+ +.|+ ...|..+-.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 999999999999999998763 3 34 4688888889999999999999999887 4566 345666666
Q ss_pred HHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH
Q 038373 238 ACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVW 300 (475)
Q Consensus 238 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~ 300 (475)
.+.. .+..+++.+..- + ..+...|..+. ....|.+++|...|++. ...|+....
T Consensus 162 ~~~~-----~~~~~~~~a~~~-~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPL-A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHH-----HHHHHHHHHGGG-T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHH-----HHHHHHHHHHhc-c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 6644 344555665522 2 22344555544 34456789999999887 444554433
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.73 E-value=1.9e-06 Score=84.47 Aligned_cols=222 Identities=9% Similarity=0.037 Sum_probs=168.0
Q ss_pred HHHHcCChHHHHHHHHhcccC---CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHH
Q 038373 104 SLCKEGKVREAIEYMGQDASA---SAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----A-FVK-DVELNNKLI 170 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~---~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g-~~p-~~~~~~~Li 170 (475)
.+...|++++|+..|++.... .+| ..++..+-..+...|+++.|...+.+..+. + ..+ ...+++.|-
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 357899999999999875542 133 235778888899999999999999887653 1 111 256788889
Q ss_pred HHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHPDKETFLVVFA 237 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd~~t~~~li~ 237 (475)
..|...|++++|...|++..+ .+ ..+|+.|-..|...|++++|++.|++..+. +......++..+-.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 999999999999999987642 22 347888999999999999999999998761 22223678888999
Q ss_pred HHHccCCHHHHHHHHHHHhhhCCC---cCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHHHHc
Q 038373 238 ACASAEAVKEGFLYFEIMKNDYGI---VPGIEHYIAIIKVLGSAGH---LIEAEEFVERMPFEPTV-EVWEALRNFAQIH 310 (475)
Q Consensus 238 ~~~~~g~~~~a~~~~~~m~~~~g~---~p~~~~y~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~t~~~li~~~~~~ 310 (475)
.+.+.|+.++|...++...+-..- ......++.+-..|...|+ +++|..++++.+..|+. ..+..|-..|...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHC
Confidence 999999999999999987743221 1123456677777888888 99999999998644444 3455677789999
Q ss_pred CCchHHHHHHHHHhc
Q 038373 311 GDVELEDRAEELLGD 325 (475)
Q Consensus 311 g~~~~a~~~~~~l~~ 325 (475)
|+.+.|...++...+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999888777665543
No 76
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.69 E-value=2.2e-05 Score=79.88 Aligned_cols=220 Identities=7% Similarity=-0.088 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHH
Q 038373 93 AQLESLDVNLLSLCK----EGKVREAIEYMGQDASASAGYDVFSSLLDSCGN----LKSIEMGKRVHELLRTSAFVKDVE 164 (475)
Q Consensus 93 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ 164 (475)
.|...+..|-..|.. .+++++|++.|++....+ +...+..|-..|.. .++.++|.+.|+...+.| +..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 344555555555655 667777777776644432 34455555555555 667777777777766654 455
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhcccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373 165 LNNKLIEMYGK----CCNTRLARKVFDQLRKR-NLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVV 235 (475)
Q Consensus 165 ~~~~Li~~~~k----~g~~~~A~~~f~~m~~~-~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~l 235 (475)
.+..|-.+|.. .++.++|.+.|++..+. +...+..|-..|.. .++.++|++.|++..+.| +...+..|
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 55666666666 56777777777665543 44556666666665 566677777776666654 45555555
Q ss_pred HHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038373 236 FAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERMPFEPTVEVWEALRNFA 307 (475)
Q Consensus 236 i~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~t~~~li~~~ 307 (475)
-..+.. .++.++|.+.|+...+. | +...+..|-..|.. .++.++|.++|++.--..+...+..|-..|
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555 66666776666666532 3 33445555555554 566666666666652123444554454445
Q ss_pred HH----cCCchHHHHHHHHH
Q 038373 308 QI----HGDVELEDRAEELL 323 (475)
Q Consensus 308 ~~----~g~~~~a~~~~~~l 323 (475)
.. .++.+.|.+.++..
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHH
Confidence 44 45554444444433
No 77
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.69 E-value=2.1e-05 Score=80.00 Aligned_cols=223 Identities=11% Similarity=-0.006 Sum_probs=175.1
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHH
Q 038373 93 AQLESLDVNLLSLCK----EGKVREAIEYMGQDASASAGYDVFSSLLDSCGN----LKSIEMGKRVHELLRTSAFVKDVE 164 (475)
Q Consensus 93 ~~~~~~n~li~~~~~----~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~ 164 (475)
-+...+..|-..|.. .++.++|++.|++....+ +...+..|-..+.. .+++++|.+.|+...+.| +..
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 456677778788888 899999999999876644 55666667777766 789999999999998876 577
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373 165 LNNKLIEMYGK----CCNTRLARKVFDQLRK-RNLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVV 235 (475)
Q Consensus 165 ~~~~Li~~~~k----~g~~~~A~~~f~~m~~-~~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~l 235 (475)
.+..|-.+|.. .++.++|.+.|++..+ .+...+..|-..|.. .++.++|++.|++..+.| +...+..+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 225 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHL 225 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 78888888887 7899999999987764 477788888888888 899999999999988865 56677777
Q ss_pred HHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038373 236 FAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERMPFEPTVEVWEALRNFA 307 (475)
Q Consensus 236 i~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~t~~~li~~~ 307 (475)
-..+.. .++.++|..+|+...+. | +...+..|-..|.. .++.++|.++|++.-...+...+..|-..|
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777765 78999999999988743 3 34556666667777 899999999999872234667777777777
Q ss_pred HHc-----CCchHHHHHHHHHhcc
Q 038373 308 QIH-----GDVELEDRAEELLGDL 326 (475)
Q Consensus 308 ~~~-----g~~~~a~~~~~~l~~~ 326 (475)
... ++.+.|...++...+.
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhc
Confidence 776 7887777666665544
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.69 E-value=2.4e-06 Score=83.42 Aligned_cols=228 Identities=9% Similarity=-0.046 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccC---CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-C
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASA---SAGY----DVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFV--K-D 162 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~---~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~ 162 (475)
.++.+-..+...|++++|.+.+++.... ..+. .++..+-..+...|++++|.+.+++..+. |.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 5666777788999999999998864431 1233 23556667788899999999999887653 322 3 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R------NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD--KETF 232 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~ 232 (475)
..+++.+-..|...|++++|...+++..+ + ...+|..+...+...|++++|...+++.....-.++ ....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 45667788889999999999999987542 1 235788888899999999999999998875321221 1111
Q ss_pred H----HHHHHHHccCCHHHHHHHHHHHhhhCCCcC---CHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH
Q 038373 233 L----VVFAACASAEAVKEGFLYFEIMKNDYGIVP---GIEHYIAIIKVLGSAGHLIEAEEFVERM-------PFEPTVE 298 (475)
Q Consensus 233 ~----~li~~~~~~g~~~~a~~~~~~m~~~~g~~p---~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~ 298 (475)
. ..+..+...|+.++|...++..... ...+ ....+..+...+...|+.++|.+.+++. +..++..
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 1 2334477899999999999887732 2211 1234667788899999999999998876 2112222
Q ss_pred -HHHHHHHHHHHcCCchHHHHHHHHHhc
Q 038373 299 -VWEALRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 299 -t~~~li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
.+..+-..+...|+.+.|...++...+
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556678889999877766655443
No 79
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.69 E-value=2.3e-06 Score=88.02 Aligned_cols=195 Identities=12% Similarity=0.062 Sum_probs=154.7
Q ss_pred CCHHHHHHHHHHHHH-------cCChH-------HHHHHHHhccc-CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCK-------EGKVR-------EAIEYMGQDAS-ASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRT 156 (475)
Q Consensus 93 ~~~~~~n~li~~~~~-------~g~~~-------~A~~l~~~~~~-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 156 (475)
.+...|..+...+.+ .|+++ +|.++|++... ..|+ ...|..+...+.+.|++++|..+|+.+.+
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~ 349 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 349 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC
Confidence 356678777777765 79987 99999999875 4564 66788888999999999999999999998
Q ss_pred cCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCC-CH
Q 038373 157 SAFVKD--VELNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMIS-GYAANGQGADGLMLFEQMRKTGPHP-DK 229 (475)
Q Consensus 157 ~g~~p~--~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~-~~~~~g~~~~A~~l~~~M~~~g~~p-d~ 229 (475)
. .|+ ..+|..++..+.+.|++++|.++|++..+. +...|-.... .|...|+.++|..+|++..+. .| +.
T Consensus 350 ~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~ 425 (530)
T 2ooe_A 350 I--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIP 425 (530)
T ss_dssp S--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCH
T ss_pred c--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCH
Confidence 5 453 358999999999999999999999987642 2222222221 234689999999999988774 34 57
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 230 ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG--IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 230 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
..|..++..+.+.|+.++|..+|+.........|+ ...|...+....+.|+.+.+.++++++
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78999999999999999999999998854333443 457888899899999999999999887
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.68 E-value=6.5e-06 Score=80.27 Aligned_cols=224 Identities=9% Similarity=-0.048 Sum_probs=158.1
Q ss_pred HHHHHHHcCChHHHHHHHHhcccCCC--CHH----HHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHH
Q 038373 101 NLLSLCKEGKVREAIEYMGQDASASA--GYD----VFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VKD----VELNNKL 169 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~~~p--~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~L 169 (475)
+-..+...|++++|...+++.....| +.. +++.+-..+...|++++|.+.+.+..+..- ..+ ..+++.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33456689999999999987544222 222 455666778889999999999988765310 112 2346777
Q ss_pred HHHHHHcCCHHHHHHHHHhccc----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 038373 170 IEMYGKCCNTRLARKVFDQLRK----------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH--P--DKETFLV 234 (475)
Q Consensus 170 i~~~~k~g~~~~A~~~f~~m~~----------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~--p--d~~t~~~ 234 (475)
-..|...|++++|...|++..+ + ...+++.+-..|...|++++|...+++.....-. + ...+|..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 8889999999999999987642 1 1246777888899999999999999998764221 1 2457788
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHH
Q 038373 235 VFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EHYI-----AIIKVLGSAGHLIEAEEFVERM-PFEPT-----VEVWEA 302 (475)
Q Consensus 235 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~y~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~t~~~ 302 (475)
+...+...|++++|...+++.... .-.++. ..+. .++..+...|+.++|.+.+++. ...|. ...+..
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENL-LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 888899999999999999987632 111111 1121 3345578999999999999988 22221 335667
Q ss_pred HHHHHHHcCCchHHHHHHHHHhc
Q 038373 303 LRNFAQIHGDVELEDRAEELLGD 325 (475)
Q Consensus 303 li~~~~~~g~~~~a~~~~~~l~~ 325 (475)
+...+...|+.+.|...++...+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888899999877776665533
No 81
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.68 E-value=7e-07 Score=84.51 Aligned_cols=202 Identities=9% Similarity=-0.001 Sum_probs=144.7
Q ss_pred ChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 038373 110 KVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVKD-VELNNKLIEMYGKCCNTRLARK 184 (475)
Q Consensus 110 ~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~Li~~~~k~g~~~~A~~ 184 (475)
++++|.+.|.+. ...+...|++++|...|....+. |-.++ ..+|+.+-.+|.+.|++++|..
T Consensus 32 ~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 32 KFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 366666666654 44567889999999999887653 32222 5689999999999999999999
Q ss_pred HHHhccc-----CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHH
Q 038373 185 VFDQLRK-----RN----LSSWHLMISGYAAN-GQGADGLMLFEQMRKTGPH-PD----KETFLVVFAACASAEAVKEGF 249 (475)
Q Consensus 185 ~f~~m~~-----~~----~~tyn~li~~~~~~-g~~~~A~~l~~~M~~~g~~-pd----~~t~~~li~~~~~~g~~~~a~ 249 (475)
.|++..+ .+ ..+|+.+-..|... |++++|++.|++..+.... .+ ..+|+.+...+.+.|++++|.
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 9987652 12 35899999999996 9999999999987763110 01 357888999999999999999
Q ss_pred HHHHHHhhhCCCcCCH------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHHHcCCchHH
Q 038373 250 LYFEIMKNDYGIVPGI------EHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVE------VWEALRNFAQIHGDVELE 316 (475)
Q Consensus 250 ~~~~~m~~~~g~~p~~------~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------t~~~li~~~~~~g~~~~a 316 (475)
..|+...+. ...... ..|..+...|...|++++|...|++. .+.|+.. .+..|+.++ ..++.+..
T Consensus 179 ~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~-~~~~~~~~ 256 (292)
T 1qqe_A 179 DIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQL 256 (292)
T ss_dssp HHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTH
T ss_pred HHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HcCCHHHH
Confidence 999998843 322221 15677788899999999999999998 4455432 234445555 34565555
Q ss_pred HHHHHHHhcc
Q 038373 317 DRAEELLGDL 326 (475)
Q Consensus 317 ~~~~~~l~~~ 326 (475)
.++.+.+...
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 6676666543
No 82
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.60 E-value=8.1e-06 Score=90.32 Aligned_cols=196 Identities=10% Similarity=0.043 Sum_probs=158.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
..|...|..++.++.+.|++++|.+.|.......++....+.+..+|++.+++++...+. + .++...|..+-+
T Consensus 1131 AdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1131 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 1203 (1630)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHH
Confidence 477788999999999999999999999875554455545556999999999998644443 2 456777888999
Q ss_pred HHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~ 251 (475)
.|...|++++|..+|... ..|..+...|++.|++++|.+.+++- -|..+|.-+-.+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999985 48999999999999999999999875 4678999999999999999999886
Q ss_pred HHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 038373 252 FEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWEALRNFAQIHG 311 (475)
Q Consensus 252 ~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~~li~~~~~~g 311 (475)
...+. .+...+..++..|-+.|.+++|..+++.- +..+ ....|+-|-..|++..
T Consensus 1273 gl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1273 GLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 65432 24556789999999999999999999765 5443 3456666666777653
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.59 E-value=7.4e-06 Score=77.41 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038373 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-----RNLSSWHLMISGYAANGQGADGLMLFEQMR 221 (475)
Q Consensus 147 a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~~~tyn~li~~~~~~g~~~~A~~l~~~M~ 221 (475)
+...+++..+.+ .++..++..+-.+|...|++++|++++.+-.. -+...+-.++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666666555 45666666777788888888888888887633 245577788888888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--c--cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 038373 222 KTGPHP-----DKETFLVVFAACA--S--AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM- 291 (475)
Q Consensus 222 ~~g~~p-----d~~t~~~li~~~~--~--~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m- 291 (475)
+. .| +..+...|..++. . .++..+|..+|+++.++ .|+..+...|++++.+.|++++|++.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 63 56 3555555555532 2 23788888888888743 344334455556788888888888888765
Q ss_pred CC-----------CCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 292 PF-----------EPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 292 ~~-----------~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
.. ..|..+.-.+|..+...|+ .+.+.++.+.+..|+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 21 2355555445554445665 56777777877777764
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.56 E-value=2.1e-06 Score=81.10 Aligned_cols=197 Identities=14% Similarity=0.085 Sum_probs=139.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 038373 91 GNAQLESLDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VKDVELNNK 168 (475)
Q Consensus 91 ~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ 168 (475)
..|....+..+... ...+ |+..|++....+ ++..++..+-.++...|++++|.+++...+..|- .-+...+-.
T Consensus 67 ~~~~~~a~~~la~~-~~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l 141 (310)
T 3mv2_B 67 TSKLGKVLDLYVQF-LDTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLL 141 (310)
T ss_dssp SSTTHHHHHHHHHH-HTTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHH
T ss_pred CCHHHHHHHHHHHH-hccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHH
Confidence 34554444444433 3322 677777765543 6777777788889999999999999999876653 246778888
Q ss_pred HHHHHHHcCCHHHHHHHHHhccc--CC-----HHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 169 LIEMYGKCCNTRLARKVFDQLRK--RN-----LSSWHLMISG--YAANG--QGADGLMLFEQMRKTGPHPDKETFLVVFA 237 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~~--~~-----~~tyn~li~~--~~~~g--~~~~A~~l~~~M~~~g~~pd~~t~~~li~ 237 (475)
++..|.+.|+.+.|.+.+++|.+ || -.+..-|..+ ....| +..+|+.+|+++.+. .|+..+-..++.
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln 219 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLN 219 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHH
Confidence 89999999999999999999974 41 3455556655 33334 899999999998764 466555556666
Q ss_pred HHHccCCHHHHHHHHHHHhhhC-C------CcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373 238 ACASAEAVKEGFLYFEIMKNDY-G------IVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT 296 (475)
Q Consensus 238 ~~~~~g~~~~a~~~~~~m~~~~-g------~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 296 (475)
++.+.|++++|++.++.+.+.+ . ..| |..+...+|......|+ +|.++++++ ...|+
T Consensus 220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 8899999999999999776421 0 124 45556455555555676 889999888 33454
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.55 E-value=2.5e-06 Score=78.89 Aligned_cols=164 Identities=14% Similarity=0.046 Sum_probs=109.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-C-CCHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-V-KDVELN 166 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~-p~~~~~ 166 (475)
.+...+-.+-..+.+.|++++|...|++.....|+ ...+..+-.++.+.|++++|...|+...+..- . .....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45556666777788999999999999987765554 45677788888899999999999999887631 1 224567
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHhccc--CC-HHHH-----------------HHHHHHHHhcCChHHHHHHHH
Q 038373 167 NKLIEMYGK--------CCNTRLARKVFDQLRK--RN-LSSW-----------------HLMISGYAANGQGADGLMLFE 218 (475)
Q Consensus 167 ~~Li~~~~k--------~g~~~~A~~~f~~m~~--~~-~~ty-----------------n~li~~~~~~g~~~~A~~l~~ 218 (475)
..+..+|.+ .|++++|...|++..+ |+ ...+ -.+...|.+.|++++|+..|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 777778888 8999999999988763 32 2333 333555666666666666666
Q ss_pred HHHHcCCCC--CHHHHHHHHHHHHcc----------CCHHHHHHHHHHHh
Q 038373 219 QMRKTGPHP--DKETFLVVFAACASA----------EAVKEGFLYFEIMK 256 (475)
Q Consensus 219 ~M~~~g~~p--d~~t~~~li~~~~~~----------g~~~~a~~~~~~m~ 256 (475)
+..+..... ....+..+..++... |++++|...++.+.
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 665532111 123444455555544 56666666666655
No 86
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.55 E-value=6.4e-06 Score=82.88 Aligned_cols=212 Identities=10% Similarity=0.014 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhccc---------CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-----
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDAS---------ASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS----- 157 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~---------~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----- 157 (475)
.....||.|-..+...|+.++|++.|++... ..| ...+|+.+-.+|...|++++|...++...+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456799998899999999999999876322 123 3567999999999999999999999887652
Q ss_pred C-CC-CCHHHHHHHHHHHHHcC--CHHHHHHHHHhcc--cC-CHHHHHHHHHH---HHhcCChHHHHHHHHHHHHcCCCC
Q 038373 158 A-FV-KDVELNNKLIEMYGKCC--NTRLARKVFDQLR--KR-NLSSWHLMISG---YAANGQGADGLMLFEQMRKTGPHP 227 (475)
Q Consensus 158 g-~~-p~~~~~~~Li~~~~k~g--~~~~A~~~f~~m~--~~-~~~tyn~li~~---~~~~g~~~~A~~l~~~M~~~g~~p 227 (475)
+ .. ....+++.+-.++.+.| ++++|...|++.. .| +...|..+... +...|+.++|++.|++..+.. ..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1 11 23566766666666654 6999999999875 34 44455555444 445688889999998887643 22
Q ss_pred CHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038373 228 DKETFLVVFAACAS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-TVEVWE 301 (475)
Q Consensus 228 d~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~t~~ 301 (475)
+..++..+...+.. .|+.++|.++++..... . ..+...+..+-..|.+.|++++|.+.|++. ...| +..+|.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-A-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-C-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-C-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 45566655555544 46778899999887733 2 224667888999999999999999999987 3344 455565
Q ss_pred HHHHHH
Q 038373 302 ALRNFA 307 (475)
Q Consensus 302 ~li~~~ 307 (475)
.+-..|
T Consensus 286 ~lg~~y 291 (472)
T 4g1t_A 286 QIGCCY 291 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 87
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.53 E-value=6.5e-06 Score=80.73 Aligned_cols=193 Identities=10% Similarity=-0.044 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhccc---CCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDAS---ASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK- 161 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~---~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p- 161 (475)
..+|+.+-..|...|++++|++.+.+... ..++ ..+++.+-..+...|++++|...+....+. +-.+
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 45788888899999999999999886433 1122 245788888899999999999999888654 2111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC
Q 038373 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK--------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHPD 228 (475)
Q Consensus 162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd 228 (475)
...+++.|-..|.+.|++++|.+.|++..+ + ...+|..+...|.+.|++++|.+.|++..+. +-...
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 124788899999999999999999987654 2 2447999999999999999999999987653 11112
Q ss_pred HHHHHHHHHHHHccCC---HHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 229 KETFLVVFAACASAEA---VKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 229 ~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
...+..+-..+...|+ +++|..+++.. +..| ....+..|-..|.+.|+.++|.+.|++.
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3346677778888888 77777777655 3333 3456778899999999999999998865
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.49 E-value=3.4e-06 Score=89.75 Aligned_cols=183 Identities=13% Similarity=0.060 Sum_probs=142.7
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhc
Q 038373 139 GNLKSIEMGKRVHELLR--------TSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAAN 207 (475)
Q Consensus 139 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~ 207 (475)
...|++++|.+.+++.. +.. ..+...+..+...|.+.|++++|.+.|++..+ | +...|..+-..|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999887 332 44667888888999999999999999998763 3 677899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHH
Q 038373 208 GQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 208 g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~ 285 (475)
|++++|++.|++..+. .| +...|..+-.++.+.|++++ .+.|+...+ ..| +...|..+-..|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998874 34 56678888889999999999 999988873 344 4677888889999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHHcCC-----chHHHHHHHHHhccCC
Q 038373 286 EFVERM-PFEPT-VEVWEALRNFAQIHGD-----VELEDRAEELLGDLDP 328 (475)
Q Consensus 286 ~~~~~m-~~~p~-~~t~~~li~~~~~~g~-----~~~a~~~~~~l~~~~~ 328 (475)
+.|++. ...|+ ...|..+..++...|+ .+...++.+.+..+.+
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 999998 56676 4566666666655554 3455667777766643
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.48 E-value=6.3e-06 Score=73.59 Aligned_cols=181 Identities=13% Similarity=0.050 Sum_probs=101.4
Q ss_pred HHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 038373 101 NLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNT 179 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~ 179 (475)
.-..+.+.|++++|+..|++.....|+... |.. . + ..... ......++.+-.+|.+.|++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-~-~--~~~~~---------------~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW-T-N--VDKNS---------------EISSKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH-H-H--SCTTS---------------HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH-h-h--hcchh---------------hhhHHHHHHHHHHHHHCCCH
Confidence 334567888889998888887664454322 222 0 0 00000 01122234466677777777
Q ss_pred HHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH--HHHHHHHH
Q 038373 180 RLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAV--KEGFLYFE 253 (475)
Q Consensus 180 ~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~--~~a~~~~~ 253 (475)
++|...|++..+ | +...|..+-..|...|++++|+..|++..+. .| +..+|..+-..+...|.. +.+...+.
T Consensus 71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 777777776542 3 5667777777777777777777777777664 34 455666666665544432 33344443
Q ss_pred HHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 038373 254 IMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEALRN 305 (475)
Q Consensus 254 ~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li~ 305 (475)
... ...|....+..+-.++...|++++|...|++. ...|+......|..
T Consensus 149 ~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 149 KLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 332 12222222223333455567777888777776 56677665555433
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.48 E-value=1.7e-05 Score=74.67 Aligned_cols=160 Identities=8% Similarity=-0.075 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHH-HHHHHH
Q 038373 129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--RNLSSWHL-MISGYA 205 (475)
Q Consensus 129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~~~tyn~-li~~~~ 205 (475)
..+..+-..+...|++++|.+.++...+.. +-+...+..|...|.+.|+.++|..+|++... |+...+.. ....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 445566666777888888888888887764 44667788888888888888888888887753 54432222 223366
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 038373 206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 285 (475)
+.|+.++|++.|++..... ..+...+..+-..+...|++++|...+..+.+...-..+...+..|...|...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 6777788888888777643 225667777888888888888888888887743111112556778888888888888887
Q ss_pred HHHHh
Q 038373 286 EFVER 290 (475)
Q Consensus 286 ~~~~~ 290 (475)
..|++
T Consensus 276 ~~~r~ 280 (287)
T 3qou_A 276 SXYRR 280 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.44 E-value=5.4e-06 Score=88.22 Aligned_cols=181 Identities=9% Similarity=-0.020 Sum_probs=147.8
Q ss_pred HHcCChHHHHHHHHhcc--------cCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 106 CKEGKVREAIEYMGQDA--------SASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 106 ~~~g~~~~A~~l~~~~~--------~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
...|++++|++.|++.. ...| +...+..+-.++.+.|++++|.+.++...+.. ..+...|..+-.+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999876 4334 44668888889999999999999999998865 45788999999999999
Q ss_pred CCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038373 177 CNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFE 253 (475)
Q Consensus 177 g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~ 253 (475)
|++++|.+.|++..+ | +...|..+-..|.+.|++++ ++.|++..+... -+...|..+-.++.+.|++++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998763 4 67799999999999999999 999999887532 256789999999999999999999999
Q ss_pred HHhhhCCCcCC-HHHHHHHHHHHHhcCC--------HHHHHHHHHhCC
Q 038373 254 IMKNDYGIVPG-IEHYIAIIKVLGSAGH--------LIEAEEFVERMP 292 (475)
Q Consensus 254 ~m~~~~g~~p~-~~~y~~li~~~~~~g~--------~~~A~~~~~~m~ 292 (475)
+.. .+.|+ ...|..+..+|...|+ +++|.+.+..+.
T Consensus 559 ~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 559 EVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp TSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred hhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 887 45665 4566677777766444 777888888773
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.43 E-value=1.4e-05 Score=78.25 Aligned_cols=193 Identities=13% Similarity=0.047 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhccc---CCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDAS---ASAG-----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK- 161 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~---~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p- 161 (475)
...|+.+-..|...|++++|+..+.+... ..++ ..+++.+-..+...|++++|.+.+....+. |-.+
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 220 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45678888889999999999998876432 1122 345778888899999999999999887653 2111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhccc-------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC-H
Q 038373 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK-------R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGP---HPD-K 229 (475)
Q Consensus 162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-------~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~---~pd-~ 229 (475)
...+++.|-..|.+.|++++|...|++..+ | ...++..+...|.+.|++++|...+++..+..- .|. .
T Consensus 221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 300 (378)
T 3q15_A 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300 (378)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 235788889999999999999999987653 2 345888899999999999999999999877421 122 3
Q ss_pred HHHHHHHHHHHccCC---HHHHHHHHHHHhhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 230 ETFLVVFAACASAEA---VKEGFLYFEIMKNDYGIVPG-IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 230 ~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
..+..+-..+...++ +++|...++.. +..|+ ...+..|-..|.+.|+.++|.+.|++.
T Consensus 301 ~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 301 ELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456666666777788 77777777653 33333 345678889999999999999999865
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=1.6e-05 Score=70.62 Aligned_cols=126 Identities=10% Similarity=-0.074 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
...+..+-..+.+.|++++|++.|++... |+...|..+-..+.+.|++++|...++...+.. ..+...+..+-.+|.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455666678889999999999988764 788888888888899999999999999888765 456778888888899
Q ss_pred HcCCHHHHHHHHHhccc--C-C----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373 175 KCCNTRLARKVFDQLRK--R-N----------------LSSWHLMISGYAANGQGADGLMLFEQMRKT 223 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~--~-~----------------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~ 223 (475)
+.|++++|...|++..+ | + ...|..+...|.+.|++++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999988887653 1 2 267888888888888888888888887764
No 94
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.42 E-value=3.7e-05 Score=77.21 Aligned_cols=200 Identities=11% Similarity=-0.045 Sum_probs=143.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-------
Q 038373 127 GYDVFSSLLDSCGNLKSIEMGKRVHELLRTS--------AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK------- 191 (475)
Q Consensus 127 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~------- 191 (475)
....||.|-..+...|+.++|.+.|++..+. .-.....+|+.+-..|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456999989999999999999999877542 1233467899999999999999999999987642
Q ss_pred ---C-CHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH---HHccCCHHHHHHHHHHHhhhCCC
Q 038373 192 ---R-NLSSWHLMISGYAAN--GQGADGLMLFEQMRKTGPHPDK-ETFLVVFAA---CASAEAVKEGFLYFEIMKNDYGI 261 (475)
Q Consensus 192 ---~-~~~tyn~li~~~~~~--g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~---~~~~g~~~~a~~~~~~m~~~~g~ 261 (475)
+ ...+|+.+-.++... +++++|++.|++..+. .|+. ..+..+..+ +...++.++|.+.++...+ +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l 204 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---L 204 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---H
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---c
Confidence 1 234677666666654 4689999999998874 4543 344444333 4456777888888887763 3
Q ss_pred cC-CHHHHHHHHHHHHh----cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 262 VP-GIEHYIAIIKVLGS----AGHLIEAEEFVERM-P-FEPTVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 262 ~p-~~~~y~~li~~~~~----~g~~~~A~~~~~~m-~-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
.| +...+..+-..+.+ .|+.++|.+++++. . ...+...|..+-..|...|+.+.|...++...+..|+..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 44 34555555544544 46788999999876 2 234677888899999999999999988888888887764
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.40 E-value=0.00011 Score=69.81 Aligned_cols=224 Identities=12% Similarity=0.068 Sum_probs=172.8
Q ss_pred HHHHHcC-ChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----H
Q 038373 103 LSLCKEG-KVREAIEYMGQDASASAGYDV-FSSLLDSCGNLK--SIEMGKRVHELLRTSAFVKDVELNNKLIEMY----G 174 (475)
Q Consensus 103 ~~~~~~g-~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~----~ 174 (475)
.+..+.| ..++|++++.......|+..| |+.--..+...+ +++++.++++.+.+.. .-+..+++---..+ .
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHH
Confidence 3444455 457999999998877787776 676666677777 9999999999998865 34555565544444 5
Q ss_pred Hc---CCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--
Q 038373 175 KC---CNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGA--DGLMLFEQMRKTGPHPDKETFLVVFAACASAEA-- 244 (475)
Q Consensus 175 k~---g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~--~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~-- 244 (475)
+. ++++++..+++.+.+ +|-.+|+.-...+.+.|.++ ++++.+++|.+.... |...|+.--..+.+.+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 55 789999999998874 47789999888888899988 999999999987643 78888877777777776
Q ss_pred ----HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCch
Q 038373 245 ----VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIE-AEEFVERM-PF----EPTVEVWEALRNFAQIHGDVE 314 (475)
Q Consensus 245 ----~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~t~~~li~~~~~~g~~~ 314 (475)
++++.+.++.+... .. -|...|+-+-..+.+.|+..+ +.++.++. .. ..+...+..+...|.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~-~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK-CP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH-CS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh-CC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 88999999888843 22 267788888888889888544 66677776 21 347788999999999999999
Q ss_pred HHHHHHHHHhc-cCCCC
Q 038373 315 LEDRAEELLGD-LDPSK 330 (475)
Q Consensus 315 ~a~~~~~~l~~-~~~~~ 330 (475)
+|.++++.+.+ .+|-+
T Consensus 276 ~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHhccChHH
Confidence 99999998875 66554
No 96
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.40 E-value=1.4e-05 Score=70.97 Aligned_cols=131 Identities=8% Similarity=-0.087 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
.+..+-..|.+.|++++|...|++...++...|..+...|.+.|++++|++.|++..+.. ..+...|..+-..+...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345566677788888888888888877788888888888888888888888888877653 2356678888888888888
Q ss_pred HHHHHHHHHHHhhhCC-------------CcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373 245 VKEGFLYFEIMKNDYG-------------IVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT 296 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~g-------------~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 296 (475)
+++|.+.|+...+... ..| ....+..+-..|.+.|+.++|.+.|++. ...|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 8888888888774211 112 1256677777888888888888888776 44454
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.36 E-value=2.6e-05 Score=69.57 Aligned_cols=127 Identities=9% Similarity=0.040 Sum_probs=95.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHH
Q 038373 199 LMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLG 276 (475)
Q Consensus 199 ~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~ 276 (475)
.+-..|.+.|++++|+..|++..+.. | +...+..+-..+...|++++|...|+...+ +.| +...|..+-..|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 38889999999999999999998853 4 677889999999999999999999999984 355 4667888877777
Q ss_pred hcCC--HHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 277 SAGH--LIEAEEFVERMPFEPTVEV--WEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 277 ~~g~--~~~A~~~~~~m~~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
..|+ .+++...++... .|+... |..+-.++...|+.+.|...++...++.|+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 6654 455667777663 344433 33333455567899999999998888888754
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.36 E-value=1.7e-05 Score=82.29 Aligned_cols=148 Identities=7% Similarity=-0.062 Sum_probs=88.5
Q ss_pred cCChHHHHHHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 038373 108 EGKVREAIEYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVF 186 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f 186 (475)
.|++++|++.|++.....|+ ...|..+-..+.+.|++++|.+.+++..+.. ..+..++..+-..|.+.|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35677777777766554443 4556667777777777777777777776654 345667777777777777777777777
Q ss_pred Hhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHhh
Q 038373 187 DQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASA---EAVKEGFLYFEIMKN 257 (475)
Q Consensus 187 ~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~---g~~~~a~~~~~~m~~ 257 (475)
++..+ | +...|..+...|.+.|++++|.+.|++..+... -+...+..+...+... |+.++|.+.+++..+
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 76542 2 456777777777777777777777777766421 2455666677777777 777777777777663
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.35 E-value=2.4e-05 Score=72.19 Aligned_cols=181 Identities=8% Similarity=-0.077 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C---C-HHHHH
Q 038373 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD---VELNNKLIEMYGKCCNTRLARKVFDQLRK--R---N-LSSWH 198 (475)
Q Consensus 128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~---~-~~tyn 198 (475)
...+-.+-..+.+.|++++|...|+.+.+.. +.+ ...+..+-.+|.+.|++++|...|+...+ | + ...|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3344444444555566666666666655542 112 34455555555566666666666655432 2 1 22444
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHH
Q 038373 199 LMISGYAA--------NGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYI 269 (475)
Q Consensus 199 ~li~~~~~--------~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~ 269 (475)
.+..+|.. .|++++|+..|++..+.. |+. ..... ...+...... -...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a--------------~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDA--------------TQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHH--------------HHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHH--------------HHHHHHHHHH-----HHHHHH
Confidence 44555555 555555555555555432 221 11100 0000000000 000124
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCchHHHHHHHHHhccCCCC
Q 038373 270 AIIKVLGSAGHLIEAEEFVERM-PFEPT----VEVWEALRNFAQIH----------GDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~t~~~li~~~~~~----------g~~~~a~~~~~~l~~~~~~~ 330 (475)
.+-..|.+.|++++|...|++. ...|+ ...+..+..+|... |+++.|...++.+.+..|+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 4566788888888888888776 22233 34555565666655 77777777777776666654
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.34 E-value=1.7e-05 Score=68.60 Aligned_cols=24 Identities=4% Similarity=-0.125 Sum_probs=9.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 038373 232 FLVVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 232 ~~~li~~~~~~g~~~~a~~~~~~m 255 (475)
+..+-..+...|++++|...|+.+
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHH
Confidence 333333333334444444433333
No 101
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.32 E-value=3.9e-05 Score=80.98 Aligned_cols=234 Identities=10% Similarity=-0.026 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHcC-------ChHHHHHHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCCCCHHH
Q 038373 95 LESLDVNLLSLCKEG-------KVREAIEYMGQDAS-ASAGYDVFSSLLDSCGNLKSIEMGK-RVHELLRTSAFVKDVEL 165 (475)
Q Consensus 95 ~~~~n~li~~~~~~g-------~~~~A~~l~~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~ 165 (475)
+..|...|.---..+ ..+++..+|++... ..-+...|-....-+-..|+.++|. ++|+..... ++.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 456776665433322 12345567776554 2345566666666677778888996 999999864 3557777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc-------------CC------------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLRK-------------RN------------LSSWHLMISGYAANGQGADGLMLFEQM 220 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~~-------------~~------------~~tyn~li~~~~~~g~~~~A~~l~~~M 220 (475)
+-.++...-+.|++++|+++|+.+.+ |+ ...|-..+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88899999999999999999998753 31 236888888888899999999999999
Q ss_pred HHc-C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--
Q 038373 221 RKT-G-PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP-- 295 (475)
Q Consensus 221 ~~~-g-~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p-- 295 (475)
.+. + ..+......+.+.-. ..++.+.|..+|+...+.++ -+...+...++.....|+.+.|..+|++. ...|
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 875 2 233344444444422 23568999999999885533 34556788899899999999999999997 3234
Q ss_pred --CHHHHHHHHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373 296 --TVEVWEALRNFAQIHGDVELEDRAEELLGDLDPSKAI 332 (475)
Q Consensus 296 --~~~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~~ 332 (475)
....|...+..-.+.|+.+.+..+.+.+.+..|+...
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 4578999999999999999999999999998887643
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.30 E-value=1.5e-05 Score=75.91 Aligned_cols=196 Identities=9% Similarity=-0.031 Sum_probs=107.8
Q ss_pred cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038373 108 EGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD 187 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~ 187 (475)
.|++++|.+++++.....+.. + +...++++.|...|... ...|...|++++|...|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-----~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-----F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-----S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-----c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 467788888887643311110 0 11135555555555543 345666677777766666
Q ss_pred hccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHccCCHHHHHHHHH
Q 038373 188 QLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKTG--P-HPD--KETFLVVFAACASAEAVKEGFLYFE 253 (475)
Q Consensus 188 ~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g--~-~pd--~~t~~~li~~~~~~g~~~~a~~~~~ 253 (475)
+..+ .+ ..+|+.+...|.+.|++++|+..|++..+.- . .|. ..+++.+-..|.. |++++|...|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 5432 11 2366667777777777777777776654320 0 111 2356666666666 77777777776
Q ss_pred HHhhhC---CCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCchHHHHHHH
Q 038373 254 IMKNDY---GIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PF---EPT----VEVWEALRNFAQIHGDVELEDRAEE 321 (475)
Q Consensus 254 ~m~~~~---g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~t~~~li~~~~~~g~~~~a~~~~~ 321 (475)
+..+-. |-.. -..+++.+-..|.+.|++++|.+.|++. .+ .++ ...|..+...+...|+.+.|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 654210 1100 1345666667777777777777777665 10 111 1244444455555677766666666
Q ss_pred HHhccCC
Q 038373 322 LLGDLDP 328 (475)
Q Consensus 322 ~l~~~~~ 328 (475)
... +.|
T Consensus 220 ~al-~~p 225 (307)
T 2ifu_A 220 ESY-SIP 225 (307)
T ss_dssp HHT-TST
T ss_pred HHh-CCC
Confidence 655 443
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.30 E-value=1.5e-05 Score=75.84 Aligned_cols=158 Identities=6% Similarity=-0.046 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCC---CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC--CH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASAS---AG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVK--DV 163 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~---p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~ 163 (475)
.|+.....|...|++++|.+.|.+..... .+ ..+|+.+...|.+.|++++|...+++..+. | .+ -.
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 56666667777788888877776533210 11 224666666666677777777766665432 2 11 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccc----C-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-
Q 038373 164 ELNNKLIEMYGKCCNTRLARKVFDQLRK----R-N----LSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHPDK- 229 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~----~-~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd~- 229 (475)
.+++.+-..|.+ |++++|...|++..+ . + ..+|+.+...|.+.|++++|++.|++.... +..++.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 345555555655 666666666654431 0 1 235555566666666666666666555431 111111
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 230 ETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 230 ~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.++..+...+...|++++|...|+...
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 133444444444555555555555543
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.29 E-value=1.7e-05 Score=68.53 Aligned_cols=152 Identities=12% Similarity=-0.048 Sum_probs=112.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHc
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAA-CAS 241 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~-~~~ 241 (475)
+..+...+.+.|++++|...|++..+ | +...|..+...|.+.|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34455678889999999999998763 3 67789999999999999999999998876543 344333222111 112
Q ss_pred cCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCchHH
Q 038373 242 AEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT---VEVWEALRNFAQIHGDVELE 316 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~t~~~li~~~~~~g~~~~a 316 (475)
.+...+|...++...+ ..| +...+..+-..|.+.|++++|.+.|++. ...|+ ...|..|...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2223346777877763 345 4778888999999999999999999988 44554 56888999999999999887
Q ss_pred HHHHHH
Q 038373 317 DRAEEL 322 (475)
Q Consensus 317 ~~~~~~ 322 (475)
...++.
T Consensus 164 ~~~y~~ 169 (176)
T 2r5s_A 164 ASKYRR 169 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.27 E-value=4.2e-05 Score=69.02 Aligned_cols=184 Identities=11% Similarity=0.041 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CCH----HHHHH
Q 038373 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF-VK-DVELNNKLIEMYGKCCNTRLARKVFDQLRK--RNL----SSWHL 199 (475)
Q Consensus 128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~~----~tyn~ 199 (475)
...+-.+...+.+.|++++|...|+.+.+..- .| ....+..+..+|.+.|++++|...|++..+ |+. ..|-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 33444445556667777777777777766421 11 124556666777777777777777776642 321 13333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-HH-----------
Q 038373 200 MISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-EH----------- 267 (475)
Q Consensus 200 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~----------- 267 (475)
+-.+|.+.|.. .++ .|..+-......|+.++|...|+.+.+. .|+. ..
T Consensus 84 ~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHH
Confidence 33333331100 000 0000111112234455555555554422 1221 11
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHhccCCCCh
Q 038373 268 ------YIAIIKVLGSAGHLIEAEEFVERM-PFEPTV----EVWEALRNFAQIHGDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 268 ------y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~l~~~~~~~~ 331 (475)
.-.+-..|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.+.|.+.++.+....|+..
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 124456788999999999999987 323442 4577788899999999999888888877666553
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.27 E-value=1.9e-05 Score=81.90 Aligned_cols=146 Identities=8% Similarity=-0.116 Sum_probs=110.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHH
Q 038373 141 LKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLF 217 (475)
Q Consensus 141 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~ 217 (475)
.|++++|.+.+++..+.. ..+...+..+-..|.+.|++++|.+.|++..+ | +...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478889999999887654 44688899999999999999999999998764 3 6779999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 038373 218 EQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA---GHLIEAEEFVERM 291 (475)
Q Consensus 218 ~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~---g~~~~A~~~~~~m 291 (475)
++..+.. .-+...+..+-..+.+.|++++|.+.++...+. .| +...+..+...|.+. |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9988753 225778999999999999999999999998843 34 467788899999999 9999999999887
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.24 E-value=5.1e-05 Score=68.46 Aligned_cols=179 Identities=11% Similarity=-0.033 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFV-KDV-ELNNK 168 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~~ 168 (475)
...+..+...+.+.|++++|...|++.....|+ ...+..+..++.+.|++++|...|+...+..-. +.. ..+-.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445556667789999999999999987654443 346777888999999999999999999876311 221 23333
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038373 169 LIEMYGK------------------CCNTRLARKVFDQLRK--RN-LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP 227 (475)
Q Consensus 169 Li~~~~k------------------~g~~~~A~~~f~~m~~--~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 227 (475)
+-.+|.+ .|+.++|...|++..+ |+ ...+.+.... ..+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~------ 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA------ 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH------
Confidence 4444443 4566777777766653 22 2222211100 00000000
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 228 DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 228 d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.....+...+.+.|++++|...|+.+.+.+.-.| ....+..+..+|.+.|+.++|.+.++.+
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 0112334556667777777777777764321111 1234666777777777777777777765
No 108
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.22 E-value=2.2e-05 Score=68.87 Aligned_cols=151 Identities=13% Similarity=0.002 Sum_probs=82.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---------CCHHHHHHHHHHHHhcCCh
Q 038373 140 NLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---------RNLSSWHLMISGYAANGQG 210 (475)
Q Consensus 140 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---------~~~~tyn~li~~~~~~g~~ 210 (475)
..|++++|.++++.+.. .......+++.+-..|...|++++|...|++..+ ....+|+.+-..|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 1112345556666666666666666666655432 1234566666677777777
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcC-CHHHHHHHHHHHHhcCC
Q 038373 211 ADGLMLFEQMRKT----GPHP--DKETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVP-GIEHYIAIIKVLGSAGH 280 (475)
Q Consensus 211 ~~A~~l~~~M~~~----g~~p--d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~y~~li~~~~~~g~ 280 (475)
++|.+.|++..+. |-.| ....+..+-..+...|++++|...+++.... .+-.. -..++..+-..|.+.|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665442 1111 1234566666677777777777777665421 11111 12335666677777888
Q ss_pred HHHHHHHHHhC
Q 038373 281 LIEAEEFVERM 291 (475)
Q Consensus 281 ~~~A~~~~~~m 291 (475)
.++|.+.|++.
T Consensus 163 ~~~A~~~~~~a 173 (203)
T 3gw4_A 163 LLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777653
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.20 E-value=0.00013 Score=68.69 Aligned_cols=95 Identities=17% Similarity=0.046 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhh---hCCCcCC-H
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRK----T-GPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKN---DYGIVPG-I 265 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~----~-g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~g~~p~-~ 265 (475)
+|+.+-..|...|++++|+..|++..+ . +..+.. .+|..+...|.+.|++++|...++...+ +.+..+. .
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 344444455555555555555544442 0 111111 1444455555555555555555444331 1111111 3
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHh
Q 038373 266 EHYIAIIKVLGSAGH-LIEAEEFVER 290 (475)
Q Consensus 266 ~~y~~li~~~~~~g~-~~~A~~~~~~ 290 (475)
.+|..+-..|.+.|+ .++|.+.|++
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 345555555555553 3555444433
No 110
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.19 E-value=4.9e-05 Score=64.11 Aligned_cols=92 Identities=9% Similarity=-0.045 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
.|..+-..+.+.|++++|...|++.....| +..++..+...+...|++++|.+.+....+.. ..+..++..+..+|.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344444455555555555555554333222 33344444444444555555555554444432 2233444444444444
Q ss_pred cCCHHHHHHHHHhc
Q 038373 176 CCNTRLARKVFDQL 189 (475)
Q Consensus 176 ~g~~~~A~~~f~~m 189 (475)
.|++++|...|++.
T Consensus 94 ~~~~~~A~~~~~~a 107 (166)
T 1a17_A 94 LGKFRAALRDYETV 107 (166)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH
Confidence 44444444444433
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.18 E-value=3.2e-05 Score=72.84 Aligned_cols=158 Identities=11% Similarity=-0.001 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-H
Q 038373 160 VKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLV-V 235 (475)
Q Consensus 160 ~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~-l 235 (475)
..+...+..+-..+.+.|++++|...|++.. .| +...+..+...|.+.|++++|..++++.... .|+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 4455667778888999999999999999876 34 6778999999999999999999999988764 455543332 2
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc
Q 038373 236 FAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT---VEVWEALRNFAQIH 310 (475)
Q Consensus 236 i~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~t~~~li~~~~~~ 310 (475)
...+...++.++|...++..... .| +...+..|-..|...|+.++|.+.|.+. ...|+ ...+..|...+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 23366777888888888887733 45 5778889999999999999999999988 33343 67899999999999
Q ss_pred CCchHHHHHHHH
Q 038373 311 GDVELEDRAEEL 322 (475)
Q Consensus 311 g~~~~a~~~~~~ 322 (475)
|+.+.|...++.
T Consensus 269 g~~~~a~~~~r~ 280 (287)
T 3qou_A 269 GTGDALASXYRR 280 (287)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 998877655543
No 112
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.18 E-value=7.3e-05 Score=70.35 Aligned_cols=162 Identities=13% Similarity=-0.037 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----H
Q 038373 129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD-----VELNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----L 194 (475)
Q Consensus 129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~ 194 (475)
..+...+..+...|++++|.+.+....+..-... ...+..+...|...|++++|...|++..+ .+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455555666666777777666666555421111 12233455566666777777777765431 11 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcCC-
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMRKT-GPHPD-----KETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVPG- 264 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~- 264 (475)
.+|+.+-..|...|++++|+..|++..+. ...|+ ..+|+.+...|.+.|++++|...++...+- .+....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 36777777777777777777777776521 01112 246777777777777777777777765421 111111
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHh
Q 038373 265 IEHYIAIIKVLGSAGHLIEA-EEFVER 290 (475)
Q Consensus 265 ~~~y~~li~~~~~~g~~~~A-~~~~~~ 290 (475)
..+|..+-..|.+.|+.++| .+.|++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 45677777777888887777 554544
No 113
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.18 E-value=8.2e-05 Score=59.98 Aligned_cols=116 Identities=7% Similarity=-0.062 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
..+...|..+...+.+.|++++|.+.|++.....| +...+..+...+...|++++|.+.++...+.. ..+..++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 46677888899999999999999999998776555 56678888888888999999999998888764 44677788888
Q ss_pred HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcC
Q 038373 171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANG 208 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g 208 (475)
.+|.+.|++++|.+.|++..+ | +...|..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888877653 2 3445666655555544
No 114
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.17 E-value=4.9e-05 Score=60.31 Aligned_cols=93 Identities=11% Similarity=0.090 Sum_probs=48.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHh
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAA 206 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~ 206 (475)
.+..+...+...|++++|.+++.++.+.. ..+..++..+...|.+.|++++|..+|+++.+ .+..+|..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 34444444444455555555555444432 23344555555555555555555555555432 244455566666666
Q ss_pred cCChHHHHHHHHHHHHc
Q 038373 207 NGQGADGLMLFEQMRKT 223 (475)
Q Consensus 207 ~g~~~~A~~l~~~M~~~ 223 (475)
.|++++|...|+++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 66666666666665543
No 115
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.17 E-value=9.9e-05 Score=58.48 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~ 239 (475)
...+..+...|.+.|++++|.++|+++.+ .+..+|..+...|.+.|++++|+.+|+++.+.. ..+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 44566666666677777777777766542 245566666666777777777777776666542 22455666666666
Q ss_pred HccCCHHHHHHHHHHHh
Q 038373 240 ASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 240 ~~~g~~~~a~~~~~~m~ 256 (475)
...|++++|...++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 67777777777776665
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.15 E-value=7.2e-05 Score=63.01 Aligned_cols=88 Identities=11% Similarity=-0.030 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 168 KLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 168 ~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
.+...|.+.|++++|...|++..+ .+..+|..+...|...|++++|++.|++..+.. ..+...|..+...+...|+
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcc
Confidence 333344444444444444443321 133344444444444444444444444444321 1123344444444444444
Q ss_pred HHHHHHHHHHHh
Q 038373 245 VKEGFLYFEIMK 256 (475)
Q Consensus 245 ~~~a~~~~~~m~ 256 (475)
+++|...++...
T Consensus 97 ~~~A~~~~~~a~ 108 (166)
T 1a17_A 97 FRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.11 E-value=0.00044 Score=64.90 Aligned_cols=188 Identities=10% Similarity=-0.068 Sum_probs=129.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHhcccC-----C----
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN---KLIEMYGKCCNTRLARKVFDQLRKR-----N---- 193 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~Li~~~~k~g~~~~A~~~f~~m~~~-----~---- 193 (475)
|+..+...+...+.-.- + ++.......+...+. ..+..+.+.|++++|..++++..+. +
T Consensus 44 ~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~ 114 (293)
T 3u3w_A 44 PSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQF 114 (293)
T ss_dssp CCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHH
Confidence 77777777776664321 1 111111223333333 3467889999999999999987642 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---C-CCcCC
Q 038373 194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-PD----KETFLVVFAACASAEAVKEGFLYFEIMKND---Y-GIVPG 264 (475)
Q Consensus 194 ~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~-g~~p~ 264 (475)
...|..+...|...|++++|+..|++....... +| ..+|+.+-..|...|++++|...|+...+. . +..+.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 123445666777788999999999999874322 33 336899999999999999999999987731 1 22222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCC-chHHHHHHHH
Q 038373 265 -IEHYIAIIKVLGSAGHLIEAEEFVERM-------PFEPT-VEVWEALRNFAQIHGD-VELEDRAEEL 322 (475)
Q Consensus 265 -~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~t~~~li~~~~~~g~-~~~a~~~~~~ 322 (475)
..+|..+-..|.+.|++++|.+.+++. +..+. ..+|..+-..|.+.|+ .+.|.+.++.
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 347888999999999999999998876 22222 5678888888999995 5777655443
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.11 E-value=0.00013 Score=68.50 Aligned_cols=160 Identities=10% Similarity=-0.086 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N------LSSWHLMISGYAANGQGADGLMLFEQMRKTG---PHPD-- 228 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g---~~pd-- 228 (475)
...+...+..|...|++++|.+.+++..+ + . ...+..+...|...|++++|++.|++..+.. ..+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44566677888999999999999876542 1 1 1234456666778889999999999887532 1222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHh---hhCCCcC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------
Q 038373 229 KETFLVVFAACASAEAVKEGFLYFEIMK---NDYGIVP--GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEP------- 295 (475)
Q Consensus 229 ~~t~~~li~~~~~~g~~~~a~~~~~~m~---~~~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p------- 295 (475)
..+|+.+-..|...|++++|...++... +..+-.+ ...+|+.+-..|.+.|++++|.+.|++. .+.+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4488899999999999999999998876 2222222 1257888899999999999999998876 1111
Q ss_pred CHHHHHHHHHHHHHcCCchHH-HHHHHH
Q 038373 296 TVEVWEALRNFAQIHGDVELE-DRAEEL 322 (475)
Q Consensus 296 ~~~t~~~li~~~~~~g~~~~a-~~~~~~ 322 (475)
-..+|..+-..|.+.|+.+.| ...++.
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 156778888889999999877 543433
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.11 E-value=0.00015 Score=64.84 Aligned_cols=171 Identities=11% Similarity=-0.010 Sum_probs=99.1
Q ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHh
Q 038373 113 EAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC----NTRLARKVFDQ 188 (475)
Q Consensus 113 ~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g----~~~~A~~~f~~ 188 (475)
+|++.|++.... -+...+..|-..+...+++++|.+.|+...+.| +...+..|-.+|.. + +.++|.+.|++
T Consensus 4 eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 345555544332 244555555556666677777777777776655 45556666666665 5 67777777766
Q ss_pred cccC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhh
Q 038373 189 LRKR-NLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPH-PDKETFLVVFAACAS----AEAVKEGFLYFEIMKND 258 (475)
Q Consensus 189 m~~~-~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~-pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~ 258 (475)
..++ +..++..|-..|.. .+++++|++.|++..+.|.. -+...+..|-..|.. .++.++|...|+...+.
T Consensus 79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 5544 45566666666655 66677777777766654421 014455555555555 56677777777766532
Q ss_pred CCCcCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHhC
Q 038373 259 YGIVPGIEHYIAIIKVLGSA-G-----HLIEAEEFVERM 291 (475)
Q Consensus 259 ~g~~p~~~~y~~li~~~~~~-g-----~~~~A~~~~~~m 291 (475)
+ .+...+..|-.+|.+. | +.++|.++|++.
T Consensus 159 -~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 159 -S--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp -S--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred -C--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 1 2233445555555443 2 666676666653
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.09 E-value=6.2e-05 Score=65.92 Aligned_cols=150 Identities=9% Similarity=-0.072 Sum_probs=109.3
Q ss_pred HHHcCChHHHHH---HHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHc
Q 038373 105 LCKEGKVREAIE---YMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFV-KDVELNNKLIEMYGKC 176 (475)
Q Consensus 105 ~~~~g~~~~A~~---l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~Li~~~~k~ 176 (475)
+...|++++|.+ ++..... ....++..+-..+...|++++|...+.+..+. |.. ....+++.+-..|...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 346799999999 5543211 24556888888899999999999999888762 222 2356788888899999
Q ss_pred CCHHHHHHHHHhccc-----C-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHc
Q 038373 177 CNTRLARKVFDQLRK-----R-N----LSSWHLMISGYAANGQGADGLMLFEQMRKTG---PHPD--KETFLVVFAACAS 241 (475)
Q Consensus 177 g~~~~A~~~f~~m~~-----~-~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g---~~pd--~~t~~~li~~~~~ 241 (475)
|++++|...|++..+ + + ...|+.+-..|...|++++|.+.+++..... -.+. ..++..+-..+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 999999999987542 2 2 2468888899999999999999998876421 1111 2346778888899
Q ss_pred cCCHHHHHHHHHHHh
Q 038373 242 AEAVKEGFLYFEIMK 256 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~ 256 (475)
.|++++|.+.+++..
T Consensus 160 ~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 160 EKNLLEAQQHWLRAR 174 (203)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999888766
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.06 E-value=9.2e-05 Score=59.23 Aligned_cols=115 Identities=9% Similarity=-0.045 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+...|..+...+...|++++|.+.|++.....| +...+..+...+...|++++|.+.+....+.. ..+...+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 344555555666666666666666665443222 34445555555555666666666665555442 2334455555555
Q ss_pred HHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCC
Q 038373 173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQ 209 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~ 209 (475)
|.+.|++++|...|++..+ | +...|..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 5555555555555554431 2 33444444444444443
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.06 E-value=0.00063 Score=60.62 Aligned_cols=161 Identities=8% Similarity=0.020 Sum_probs=129.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLK----SIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
-+...+..|-..|...+++++|++.|++....+ +...+..|-..|.. + +.++|.+.|+...+.| +...+..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 567778888888999999999999999876644 55666667667776 6 8999999999998876 5778888
Q ss_pred HHHHHHH----cCCHHHHHHHHHhcccCC-----HHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038373 169 LIEMYGK----CCNTRLARKVFDQLRKRN-----LSSWHLMISGYAA----NGQGADGLMLFEQMRKTGPHPDKETFLVV 235 (475)
Q Consensus 169 Li~~~~k----~g~~~~A~~~f~~m~~~~-----~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~l 235 (475)
|-.+|.. .++.++|...|++..+.+ ..+++.|-..|.. .++.++|+..|++-.+.+ .+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 8888887 889999999999887653 5789999999998 889999999999998762 244456666
Q ss_pred HHHHHcc-C-----CHHHHHHHHHHHhhhCCC
Q 038373 236 FAACASA-E-----AVKEGFLYFEIMKNDYGI 261 (475)
Q Consensus 236 i~~~~~~-g-----~~~~a~~~~~~m~~~~g~ 261 (475)
-..|... | +.++|...|+...+. |.
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~-g~ 199 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLE-GF 199 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHH-TC
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHc-CC
Confidence 6666542 3 899999999988843 64
No 123
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.03 E-value=5.5e-05 Score=63.60 Aligned_cols=115 Identities=11% Similarity=-0.017 Sum_probs=62.6
Q ss_pred HcCChHHHHHHHHhcccCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 038373 107 KEGKVREAIEYMGQDASASAGYD-VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKV 185 (475)
Q Consensus 107 ~~g~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~ 185 (475)
..|++++|++.|.+.....|+.. .+-.+-..|.+.|++++|.+.|+...+.. +-+..+|..+-.+|.+.|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34556666666665544333222 23344555666666666666666665543 33455666666666666666666666
Q ss_pred HHhccc--C-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHH
Q 038373 186 FDQLRK--R-NLSSWHLMISGYAANGQGADGLML-FEQMRK 222 (475)
Q Consensus 186 f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l-~~~M~~ 222 (475)
|++..+ | +..+|..+...|.+.|+.++|.+. +++..+
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 655442 3 345566666666666665554443 344443
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.03 E-value=0.0012 Score=63.44 Aligned_cols=226 Identities=13% Similarity=0.092 Sum_probs=163.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHH-HHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDV-FSSLLDSCGNLK-SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
|+.+-..+.+.+..++|++++.++....|+..| |+.--..+...+ .++++.++++.+.+.. .-+..+|+----.+.+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 343333344555667999999998877777666 666555556667 5999999999999875 5677788877777777
Q ss_pred c-C-CHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038373 176 C-C-NTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGA--------DGLMLFEQMRKTGPHPDKETFLVVFAACASA 242 (475)
Q Consensus 176 ~-g-~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~--------~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~ 242 (475)
. + +.+++.++++.+.+. |-.+|+--...+.+.|.++ ++++.++++.+.... |...|+..-..+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 6 7 889999999998753 6678887666666666666 999999999987543 888898888888887
Q ss_pred CC-------HHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC
Q 038373 243 EA-------VKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHL--------------------IEAEEFVERM-PF 293 (475)
Q Consensus 243 g~-------~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~--------------------~~A~~~~~~m-~~ 293 (475)
+. ++++.+.++.... ..| |...|+-+-..+.+.|+- .+..++..++ +.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred cccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 76 7888888888773 344 677787777777777653 3444555555 21
Q ss_pred -------CCCHHHHHHHHHHHHHcCCchHHHHHHHHHh-ccCC
Q 038373 294 -------EPTVEVWEALRNFAQIHGDVELEDRAEELLG-DLDP 328 (475)
Q Consensus 294 -------~p~~~t~~~li~~~~~~g~~~~a~~~~~~l~-~~~~ 328 (475)
.+....+..|.+.|...|+.++|.++++.+. +.+|
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 2677888889999999999988888888875 4443
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.02 E-value=1.7e-05 Score=66.74 Aligned_cols=107 Identities=6% Similarity=-0.070 Sum_probs=51.8
Q ss_pred HcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH
Q 038373 175 KCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~~ 250 (475)
..|++++|...|...... +...|-.+-..|.+.|++++|++.|++..+. .| +..+|..+-..+...|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 334455555555444321 2223444455555555555555555555442 22 34455555555555555555555
Q ss_pred HHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHH
Q 038373 251 YFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEE 286 (475)
Q Consensus 251 ~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~ 286 (475)
.|+...+ +.| +...|..+-..|.+.|+.++|.+
T Consensus 87 ~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 87 CYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 5555542 233 23445555555555555554433
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.99 E-value=4.7e-05 Score=71.45 Aligned_cols=188 Identities=7% Similarity=-0.108 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHH
Q 038373 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGY 204 (475)
Q Consensus 128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~ 204 (475)
...+..+-..+.+.|++++|...+....+.. ..+...|..+-.+|.+.|++++|...|++..+ | +...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555566666777777777777766653 33667777777777777888888877776653 2 566777778888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 038373 205 AANGQGADGLMLFEQMRKTGPHPDK-ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIE 283 (475)
Q Consensus 205 ~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~ 283 (475)
...|++++|+..|++..+.. |+. ..+...+....+ ..++.. +...... ....+......+ ..+ ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHH-HHH-HHHHHHH
Confidence 88888888888887766532 211 011111111111 111111 1222211 333343333333 222 2688888
Q ss_pred HHHHHHhC-CCCCCHHHHHH-HHHHHHHc-CCchHHHHHHHHHhc
Q 038373 284 AEEFVERM-PFEPTVEVWEA-LRNFAQIH-GDVELEDRAEELLGD 325 (475)
Q Consensus 284 A~~~~~~m-~~~p~~~t~~~-li~~~~~~-g~~~~a~~~~~~l~~ 325 (475)
|.+.+++. ...|+...... +-..+.+. +..++++++++...+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888776 55565443332 32233333 445555555555444
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.98 E-value=6.6e-05 Score=69.96 Aligned_cols=192 Identities=12% Similarity=-0.027 Sum_probs=129.7
Q ss_pred HHHHcCChHHHHHHHHhcccCCCC-HHHHHHH-------HHHHhccCCHHHHHHHHHHHHHcCCCCC-------------
Q 038373 104 SLCKEGKVREAIEYMGQDASASAG-YDVFSSL-------LDSCGNLKSIEMGKRVHELLRTSAFVKD------------- 162 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p~-~~t~~~l-------l~~~~~~~~~~~a~~~~~~m~~~g~~p~------------- 162 (475)
++ +.++..+|.+.|.+.....|+ ...|..+ ...+.+.++..++...+..-. ++.|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QISMSTLNARIAIGGLYG 92 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TCCGGGGCCEEECCTTTC
T ss_pred cc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cCChhhhhhhhccCCccc
Confidence 45 689999999999987765554 3456666 233333333333333333222 32222
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--
Q 038373 163 ---------VELNNKLIEMYGKCCNTRLARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDK-- 229 (475)
Q Consensus 163 ---------~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-- 229 (475)
...+-.+...|...|++++|.++|+.+. .|+-+..-.+-..|.+.|++++|+..|++... .|+.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCccc
Confidence 2334456778888999999999999886 35333555666688999999999999985433 2322
Q ss_pred --HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc-CC--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 038373 230 --ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV-PG--IEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEAL 303 (475)
Q Consensus 230 --~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-p~--~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~l 303 (475)
..+..+-.++...|++++|...|++.. . |-. |. ......+-.++.+.|+.++|..+|+++ ...|+...+..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEAN-D-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHh-c-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 367777888999999999999999987 3 333 54 224455666789999999999999988 445664444444
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.95 E-value=8e-05 Score=71.82 Aligned_cols=92 Identities=10% Similarity=-0.109 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAA 238 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~ 238 (475)
..+|..+-.+|.+.|++++|...|++..+ .+...|..+-.+|...|++++|+..|++..+. .| +...+..+...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 35666666667777777777777665542 25556666777777777777777777766653 23 44566666666
Q ss_pred HHccCCHHHH-HHHHHHHh
Q 038373 239 CASAEAVKEG-FLYFEIMK 256 (475)
Q Consensus 239 ~~~~g~~~~a-~~~~~~m~ 256 (475)
+.+.|+.++| ..++..|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666777666 33455544
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.94 E-value=0.00012 Score=63.01 Aligned_cols=116 Identities=10% Similarity=0.094 Sum_probs=59.9
Q ss_pred HHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 038373 106 CKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM-YGKCCNT--RL 181 (475)
Q Consensus 106 ~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~-~~k~g~~--~~ 181 (475)
...|++++|...|++.....| +...|..+-..+...|++++|...++...+.. ..+...+..+..+ |.+.|+. ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 455666666666655443233 34455555556666666666666666655543 2344455555555 4555555 55
Q ss_pred HHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 182 ARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 182 A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
|...|++..+ | +...|..+...|...|++++|...|++..+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555432 2 344555555555555555555555555554
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.94 E-value=4e-05 Score=65.98 Aligned_cols=135 Identities=8% Similarity=0.017 Sum_probs=91.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHH-HHhcCCh--HH
Q 038373 139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISG-YAANGQG--AD 212 (475)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~-~~~~g~~--~~ 212 (475)
...|++++|...+....+.. ..+...+..+...|...|++++|...|++..+ .+...|..+... |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34567777877777776654 45677888888888888888888888887653 366677777777 7788887 88
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc
Q 038373 213 GLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA 278 (475)
Q Consensus 213 A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~ 278 (475)
|...|++..+... -+...+..+...+...|++++|...++...+. .|+......++....+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~i~~~ 161 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL---NSPRINRTQLVESINMA 161 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh---CCCCccHHHHHHHHHHH
Confidence 8888888877531 24567777778888888888888888887733 33332333444444443
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.92 E-value=0.00029 Score=56.19 Aligned_cols=113 Identities=12% Similarity=-0.048 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 164 ELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA 240 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~ 240 (475)
..+..+...|...|++++|...|++..+ .+...|..+...|...|++++|.+.+++..... ..+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444445555555555555555554431 244455555555555666666666665555432 123445555555566
Q ss_pred ccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCC
Q 038373 241 SAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGH 280 (475)
Q Consensus 241 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~ 280 (475)
..|++++|...++...+. .| +...+..+...+.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHhc
Confidence 666666666666555522 22 34445555555555554
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.89 E-value=0.00026 Score=56.86 Aligned_cols=91 Identities=9% Similarity=-0.080 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~ 241 (475)
.+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. ..+...+..+...+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 333444444444444444444443321 133344444444444444444444444444321 1123344444444444
Q ss_pred cCCHHHHHHHHHHHh
Q 038373 242 AEAVKEGFLYFEIMK 256 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~ 256 (475)
.|++++|.+.++...
T Consensus 97 ~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 97 MKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444443
No 133
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.87 E-value=0.0035 Score=62.91 Aligned_cols=199 Identities=9% Similarity=0.014 Sum_probs=124.7
Q ss_pred HHHHHHHHHHcCCh----HHHHHHHHhcccCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 98 LDVNLLSLCKEGKV----REAIEYMGQDASASAGYDVFSSLLDSCGNLK---SIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 98 ~n~li~~~~~~g~~----~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
+..|-..|...+.+ +++..+++......|+ .+..|-..+.+.| +.++|.+.|....+.| .++...+..|-
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 33444445555533 3344444444442344 6666666677777 7888888888888887 56666656676
Q ss_pred HHHHHc----CCHHHHHHHHHhcccCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038373 171 EMYGKC----CNTRLARKVFDQLRKRNLSSWHLMISG-Y--AANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE 243 (475)
Q Consensus 171 ~~~~k~----g~~~~A~~~f~~m~~~~~~tyn~li~~-~--~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g 243 (475)
.+|... ++.++|.+.|+....-+...+..|-.. | ...|+.++|++.|++..+.| +...+..|-..|. .|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 777554 688888888887772255667666666 3 45788888888888887766 5556666655555 45
Q ss_pred -----CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038373 244 -----AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERMPFEPTVEVWEALRNFAQ 308 (475)
Q Consensus 244 -----~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~ 308 (475)
+.++|...|+... . | +...+..|-..|.+ ..+.++|.++|++---..+......|-..|.
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~-g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-G-R---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS 365 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-T-T---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh-C-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 8888888887655 2 2 34555555555655 3378888888887611223334444444443
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.85 E-value=0.00045 Score=56.00 Aligned_cols=85 Identities=8% Similarity=-0.057 Sum_probs=34.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHH
Q 038373 137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADG 213 (475)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A 213 (475)
.+.+.|++++|.+.|++..+.. +.+..+|..+-.+|.+.|++++|...|++..+ .+...|..+-.+|...|++++|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKA 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHH
Confidence 3344444444444444443332 22334444444444444444444444443321 1333444444444444444444
Q ss_pred HHHHHHHHH
Q 038373 214 LMLFEQMRK 222 (475)
Q Consensus 214 ~~l~~~M~~ 222 (475)
++.|++..+
T Consensus 101 ~~~~~~al~ 109 (126)
T 4gco_A 101 QRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 135
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.80 E-value=0.00075 Score=71.17 Aligned_cols=212 Identities=11% Similarity=-0.060 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHH-HHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---------CCC
Q 038373 94 QLESLDVNLLSLCKEGKVREAI-EYMGQDASASAG-YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAF---------VKD 162 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~-~l~~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---------~p~ 162 (475)
+...|-..+.-+-+.|+.++|. ++|++....-|+ ...+-..+...-+.|+++.|.++|+.+.+... .|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 4556666666677789999997 999887654454 44466677777788999999999999986420 142
Q ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHhcccC----CHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCC
Q 038373 163 ------------VELNNKLIEMYGKCCNTRLARKVFDQLRKR----NLSSWHLMISGYAA-NGQGADGLMLFEQMRKTGP 225 (475)
Q Consensus 163 ------------~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~----~~~tyn~li~~~~~-~g~~~~A~~l~~~M~~~g~ 225 (475)
..+|...++..-+.|.++.|+++|+...+. ....|-..+.--.+ .++.+.|..+|+...+. +
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 347888888888999999999999987542 22233222222223 35589999999998875 3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 038373 226 HPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP--GIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPTVEVWEA 302 (475)
Q Consensus 226 ~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~t~~~ 302 (475)
.-+..-+...+.-....|+.+.|..+|+..... ...+ ....|...++.-.+.|+.+.+.++.+++ ...|+......
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~-~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~ 579 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK-ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEE 579 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT-SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHH
Confidence 335556678888888899999999999998843 2211 3567999999999999999999999999 23355444444
Q ss_pred HHHHH
Q 038373 303 LRNFA 307 (475)
Q Consensus 303 li~~~ 307 (475)
+++=|
T Consensus 580 f~~ry 584 (679)
T 4e6h_A 580 FTNKY 584 (679)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 44433
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.79 E-value=0.00031 Score=59.17 Aligned_cols=93 Identities=12% Similarity=-0.027 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHh
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAA 206 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~ 206 (475)
.+..+-..+.+.|++++|...|+...+.. +.+...|..|-.+|.+.|++++|...|++.. .| +...|..+-.+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 35555556667777777777777776654 3456666677777777777777777776654 23 45566677777777
Q ss_pred cCChHHHHHHHHHHHHc
Q 038373 207 NGQGADGLMLFEQMRKT 223 (475)
Q Consensus 207 ~g~~~~A~~l~~~M~~~ 223 (475)
.|++++|+..|++..+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766653
No 137
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.00022 Score=70.63 Aligned_cols=189 Identities=8% Similarity=-0.082 Sum_probs=134.9
Q ss_pred HHHHHcCChHHHHHHHHhcccCCCC------------------HHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCH
Q 038373 103 LSLCKEGKVREAIEYMGQDASASAG------------------YDVFSSLLDSCGNLKSIEMGKRVHELLRTS-AFVKDV 163 (475)
Q Consensus 103 ~~~~~~g~~~~A~~l~~~~~~~~p~------------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~ 163 (475)
..+.+.|++++|++.|.+.....|+ ...+..+...|.+.|++++|.+.+..+.+. +-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3578899999999999865432221 123778889999999999999999887653 112222
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--C
Q 038373 164 ----ELNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKT--GP--H 226 (475)
Q Consensus 164 ----~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~--~ 226 (475)
.+.+.+-..+...|+.++|..++..... .+ ..++..|...|...|++++|..++++.... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 2233333344556899999999887642 11 347889999999999999999999987653 22 2
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 227 PD-KETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVPG--IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 227 pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
|. ..+|..++..|...|++++|..+++..... .+..+. ...|..+...+...|++++|...|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 347888999999999999999999876532 111111 345677777888899999998877655
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.78 E-value=0.0027 Score=59.27 Aligned_cols=189 Identities=8% Similarity=-0.070 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+...|..+-..+.+.|++++|+..|++.....| +...|..+-.++.+.|++++|.+.++...+.. ..+...+..+-.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 556788888899999999999999998766556 66778888899999999999999999998764 4578899999999
Q ss_pred HHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038373 173 YGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGF 249 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~ 249 (475)
|.+.|++++|...|++..+ | +...+...+....+. .++ .-+.+....-...+......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 9999999999999987653 2 111111222222111 111 122223333344444433333 333 268888998
Q ss_pred HHHHHHhhhCCCcCCH-HHHHHHHHHHHhc-CCHHHHHHHHHhCC
Q 038373 250 LYFEIMKNDYGIVPGI-EHYIAIIKVLGSA-GHLIEAEEFVERMP 292 (475)
Q Consensus 250 ~~~~~m~~~~g~~p~~-~~y~~li~~~~~~-g~~~~A~~~~~~m~ 292 (475)
+.++... ...|+. .....+-..+.+. +.+++|.++|.+..
T Consensus 156 ~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 156 EECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp TTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8887766 346654 3334444445555 67889999999883
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.77 E-value=0.00022 Score=59.69 Aligned_cols=91 Identities=10% Similarity=-0.106 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACAS 241 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~ 241 (475)
.+..+-..|.+.|++++|...|+... .| +...|..+-.+|...|++++|+..|++...... -+...|..+-.++..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 34444445555555555555555443 12 444555555555555555555555555544321 133444445555555
Q ss_pred cCCHHHHHHHHHHHh
Q 038373 242 AEAVKEGFLYFEIMK 256 (475)
Q Consensus 242 ~g~~~~a~~~~~~m~ 256 (475)
.|++++|...|+...
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555544
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.76 E-value=0.00072 Score=52.72 Aligned_cols=91 Identities=5% Similarity=-0.049 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK 175 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k 175 (475)
.|..+...+.+.|++++|...|++.....| +...+..+...+...|++++|...++...+.. ..+...+..+..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 444444455555555555555554333222 33334444444444445555544444444432 1233344444444444
Q ss_pred cCCHHHHHHHHHh
Q 038373 176 CCNTRLARKVFDQ 188 (475)
Q Consensus 176 ~g~~~~A~~~f~~ 188 (475)
.|++++|.+.|++
T Consensus 85 ~~~~~~A~~~~~~ 97 (118)
T 1elw_A 85 LNRFEEAKRTYEE 97 (118)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHH
Confidence 4444444444443
No 141
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.75 E-value=0.00021 Score=57.16 Aligned_cols=95 Identities=7% Similarity=-0.092 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCC-cCC----HHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGI-VPG----IEHYIA 270 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~p~----~~~y~~ 270 (475)
.|..+...|...|++++|...|++..... ..+...+..+...+...|++++|...++...+...- .++ ...|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444555555555555555544432 123344444445555555555555555544421000 011 344455
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 038373 271 IIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~m 291 (475)
+...|.+.|++++|.+.|++.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 555555555555555555554
No 142
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.75 E-value=0.00043 Score=55.25 Aligned_cols=91 Identities=9% Similarity=0.101 Sum_probs=47.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C-------HHHHHHH
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N-------LSSWHLM 200 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~-------~~tyn~l 200 (475)
|..+...+...|++++|...+....+.. ..+..++..+...|.+.|++++|...|++..+ | + ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444445555555555555554433 23444555555555555555555555554432 1 1 4455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 038373 201 ISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~ 222 (475)
...|...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5666666666666666666555
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.75 E-value=0.00068 Score=65.21 Aligned_cols=125 Identities=7% Similarity=-0.028 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--RN----------------LSSWHLMISGYAANGQGADGLMLFEQMRKTG 224 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~----------------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g 224 (475)
...+..+-..|.+.|++++|...|++..+ |+ ...|+.+-.+|.+.|++++|+..|++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555555566666666666666655431 22 4789999999999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHH-HHHHHhC
Q 038373 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEA-EEFVERM 291 (475)
Q Consensus 225 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A-~~~~~~m 291 (475)
.-+...|..+-.++...|++++|...|+...+ +.| +...+..+-..+.+.|+.++| .++|.+|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23677888999999999999999999999883 344 466788888999999999988 4456655
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.73 E-value=0.0027 Score=60.60 Aligned_cols=232 Identities=12% Similarity=0.067 Sum_probs=160.6
Q ss_pred CCHHHHHHHHHH---HHHcCChH-HHHHHHHhcccCCCCHHH-HHH---HHHHHhccC-------CHHHHHHHHHHHHHc
Q 038373 93 AQLESLDVNLLS---LCKEGKVR-EAIEYMGQDASASAGYDV-FSS---LLDSCGNLK-------SIEMGKRVHELLRTS 157 (475)
Q Consensus 93 ~~~~~~n~li~~---~~~~g~~~-~A~~l~~~~~~~~p~~~t-~~~---ll~~~~~~~-------~~~~a~~~~~~m~~~ 157 (475)
.-+..|..+... ..+.|.+. +|++++.......|+..| |+. +|....+.. .++++..+++.+...
T Consensus 24 ~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 24 QKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 345566666554 34667665 899999998887788776 432 333333321 267888999988876
Q ss_pred CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHH
Q 038373 158 AFVKDVELNNKLIEMYGKCC--NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQ-GADGLMLFEQMRKTGPHPDKET 231 (475)
Q Consensus 158 g~~p~~~~~~~Li~~~~k~g--~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~-~~~A~~l~~~M~~~g~~pd~~t 231 (475)
. +-+..+|+----.+.+.| .++++..+++.+.+ +|-.+|+--.-.+...|. ++++++.++++.+..+. |...
T Consensus 104 ~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SA 181 (331)
T 3dss_A 104 N-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 181 (331)
T ss_dssp C-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHH
T ss_pred C-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHH
Confidence 5 567888888777788888 48999999998874 477899988888888888 59999999999987543 7777
Q ss_pred HHHHHHHHHcc--------------CCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc-----------CCHHHHH
Q 038373 232 FLVVFAACASA--------------EAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA-----------GHLIEAE 285 (475)
Q Consensus 232 ~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~-----------g~~~~A~ 285 (475)
|+..-..+.+. +.++++.+.+..... ..| |...|+-+--.+.+. +.++++.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 87766665554 457888888888773 345 566676555555555 5688999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHH-----HHcCCchHHHHHHHHHhccCCCC
Q 038373 286 EFVERM-PFEPTVEVWEALRNFA-----QIHGDVELEDRAEELLGDLDPSK 330 (475)
Q Consensus 286 ~~~~~m-~~~p~~~t~~~li~~~-----~~~g~~~~a~~~~~~l~~~~~~~ 330 (475)
+.++++ ...||. .|+.+-.+. ...|..++....++.+.+++|..
T Consensus 259 ~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 259 ESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 999888 556775 455322221 12455545555666666666554
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=0.0011 Score=54.32 Aligned_cols=97 Identities=13% Similarity=-0.020 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAG----YDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
.+...|..+...+.+.|++++|.+.|++.....|+ ...|..+-.++...|++++|...++...+.. ..+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 56778888888999999999999999988776787 4566777777778888888888888776653 335666666
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc
Q 038373 169 LIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
+..+|.+.|++++|...|++..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777776554
No 146
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.71 E-value=0.00052 Score=56.86 Aligned_cols=126 Identities=10% Similarity=-0.056 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKTGP-HPD----KE 230 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~ 230 (475)
++..+-..|...|++++|...|++..+ .+ ..+|+.+...|...|++++|.+.|++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 444455555555555555555554431 11 12555566666666666666666665443110 011 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 231 TFLVVFAACASAEAVKEGFLYFEIMKND---YGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 231 t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
.+..+-..+...|++++|.+.++...+. .+-.+ ....+..+-..|...|+.++|.+.+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4455555556666666666665554421 11111 123455555666666666666666554
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.69 E-value=0.00025 Score=59.43 Aligned_cols=92 Identities=12% Similarity=-0.132 Sum_probs=68.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHh
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAA 206 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~ 206 (475)
.+..+-..+.+.|++++|...|+...+.. ..+...+..+-.+|.+.|++++|...|++..+ | +...|..+-.+|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 45556666777788888888887777654 44677777777788888888888888877652 3 56677778888888
Q ss_pred cCChHHHHHHHHHHHH
Q 038373 207 NGQGADGLMLFEQMRK 222 (475)
Q Consensus 207 ~g~~~~A~~l~~~M~~ 222 (475)
.|++++|.+.|++..+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888877765
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00097 Score=53.48 Aligned_cols=86 Identities=9% Similarity=-0.059 Sum_probs=39.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHH
Q 038373 136 DSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGAD 212 (475)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~ 212 (475)
..+.+.|++++|...|....+.. +.+...|..+-.+|.+.|++++|...|++..+ | +...|..+-.+|...|++++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 90 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS 90 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHH
Confidence 33444444444444444444332 22344444444444444555555444444331 2 33444444555555555555
Q ss_pred HHHHHHHHHH
Q 038373 213 GLMLFEQMRK 222 (475)
Q Consensus 213 A~~l~~~M~~ 222 (475)
|++.|++..+
T Consensus 91 A~~~~~~al~ 100 (126)
T 3upv_A 91 ALETLDAART 100 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 149
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.67 E-value=0.001 Score=53.93 Aligned_cols=104 Identities=8% Similarity=-0.036 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
..|...=..|.+.|++++|++.|++.....| +...|..+-.++.+.|++++|...++..++.. ..+...|..+-.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 4677777789999999999999998766555 56778889999999999999999999998875 567889999999999
Q ss_pred HcCCHHHHHHHHHhccc--C-CHHHHHHH
Q 038373 175 KCCNTRLARKVFDQLRK--R-NLSSWHLM 200 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~--~-~~~tyn~l 200 (475)
+.|++++|.+.|++..+ | |...+..|
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 99999999999998753 4 44444443
No 150
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.67 E-value=0.0035 Score=62.84 Aligned_cols=182 Identities=12% Similarity=0.038 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHhcccCC-CCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 97 SLDVNLLSLCKEG---KVREAIEYMGQDASAS-AGYDVFSSLLDSCGNL----KSIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 97 ~~n~li~~~~~~g---~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
.+..|-..|.+.| +.++|++.|++....+ ++...+..|-..|... ++.++|.+.|+... .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 7778888888999 9999999999877666 4444445566666554 79999999999987 44 4566666
Q ss_pred HHHH-H--HHcCCHHHHHHHHHhcccC-CHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 169 LIEM-Y--GKCCNTRLARKVFDQLRKR-NLSSWHLMISGYAANG-----QGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239 (475)
Q Consensus 169 Li~~-~--~k~g~~~~A~~~f~~m~~~-~~~tyn~li~~~~~~g-----~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~ 239 (475)
|-.+ | ...|+.++|.+.|++.-+. +...+..|-..|. .| ++++|++.|++-. . -+...+..|-..|
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHH
Confidence 7666 4 4689999999999987655 6678888888777 56 9999999999876 3 3556666666666
Q ss_pred Hc----cCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC
Q 038373 240 AS----AEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGS----AGHLIEAEEFVERM 291 (475)
Q Consensus 240 ~~----~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~~~~~m 291 (475)
.. ..+.++|...|+...+. |. + ..+..|-.+|.. ..+.++|..+|+.-
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~-g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARN-GQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTT-TC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HCCCCCCcCHHHHHHHHHHHHhh-Ch-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 55 44999999999998843 53 3 334555555653 45899999999887
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.66 E-value=0.0011 Score=56.14 Aligned_cols=25 Identities=12% Similarity=-0.075 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 267 HYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 267 ~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.|..+-..|.+.|++++|.+.|++.
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3334444444444444444444433
No 152
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.64 E-value=0.00041 Score=58.39 Aligned_cols=96 Identities=8% Similarity=0.008 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+...|..+-..+.+.|++++|+..|++.....| +...|..+-.++...|++++|...|+...+.. +-+...|..+-.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 455778888889999999999999998776555 56678889999999999999999999998875 4567889999999
Q ss_pred HHHcCCHHHHHHHHHhcc
Q 038373 173 YGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~ 190 (475)
|.+.|++++|...|+...
T Consensus 114 ~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999999875
No 153
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.63 E-value=0.00081 Score=68.10 Aligned_cols=111 Identities=11% Similarity=-0.057 Sum_probs=52.9
Q ss_pred HHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 038373 174 GKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGF 249 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~ 249 (475)
.+.|++++|.+.|++..+ | +..+|+.+..+|.+.|++++|++.|++..+. .| +..+|..+-.++...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344555555555554331 2 3445555555555555555555555555543 22 3445555555555666666666
Q ss_pred HHHHHHhhhCCCcCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038373 250 LYFEIMKNDYGIVPG-IEHYIAIIKV--LGSAGHLIEAEEFVE 289 (475)
Q Consensus 250 ~~~~~m~~~~g~~p~-~~~y~~li~~--~~~~g~~~~A~~~~~ 289 (475)
+.+++..+. .|+ ...+..+-.+ +.+.|++++|.++++
T Consensus 95 ~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666555422 121 1222222222 555566666666665
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.63 E-value=0.00051 Score=60.23 Aligned_cols=135 Identities=10% Similarity=-0.008 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
...|..+-..+.+.|++++|++.|++.....|+...+... ....-. ..+ ...++..+-.+|.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~---~~~-------~~~~~~~la~~~~ 99 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--------ILLDKK---KNI-------EISCNLNLATCYN 99 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--------HHHHHH---HHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--------hHHHHH---HHH-------HHHHHHHHHHHHH
Confidence 3456666677888888888888888755433321100000 000000 000 0234445555555
Q ss_pred HcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHH
Q 038373 175 KCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVKEGF 249 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~~a~ 249 (475)
+.|++++|...|+...+ .+...|..+-.+|...|++++|++.|++..+. .| +...+..+...+...++.+++.
T Consensus 100 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554432 24445555555666666666666666555543 22 3344445555555555555444
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.63 E-value=0.0017 Score=50.46 Aligned_cols=92 Identities=12% Similarity=-0.104 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 164 ELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACA 240 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~ 240 (475)
..+..+...|...|++++|...|++..+ | +...|..+...|...|++++|...+++..+.. ..+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444455555555566666555555431 2 44555555556666666666666666555532 113445555556666
Q ss_pred ccCCHHHHHHHHHHHh
Q 038373 241 SAEAVKEGFLYFEIMK 256 (475)
Q Consensus 241 ~~g~~~~a~~~~~~m~ 256 (475)
..|++++|...++...
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 6666666666666555
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.63 E-value=0.00051 Score=53.12 Aligned_cols=90 Identities=8% Similarity=-0.057 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcc
Q 038373 167 NKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPH-PDKETFLVVFAACASA 242 (475)
Q Consensus 167 ~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~-pd~~t~~~li~~~~~~ 242 (475)
..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.... .+...+..+...+...
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 3334444444444444444443321 13344444445555555555555555554442110 0234444444555555
Q ss_pred -CCHHHHHHHHHHHh
Q 038373 243 -EAVKEGFLYFEIMK 256 (475)
Q Consensus 243 -g~~~~a~~~~~~m~ 256 (475)
|++++|.+.+....
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 90 EGKEVEAEIAEARAK 104 (112)
T ss_dssp SSCSHHHHHHHHHHG
T ss_pred hCCHHHHHHHHHHHh
Confidence 55555555555544
No 157
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.62 E-value=0.0027 Score=60.05 Aligned_cols=207 Identities=8% Similarity=-0.022 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHHcC--ChHHHHHHHHhcccCCCCHHH-HHHHHHHH----hcc---CCHHHHHHHHHHHHHcCCCCCH
Q 038373 94 QLESLDVNLLSLCKEG--KVREAIEYMGQDASASAGYDV-FSSLLDSC----GNL---KSIEMGKRVHELLRTSAFVKDV 163 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g--~~~~A~~l~~~~~~~~p~~~t-~~~ll~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~ 163 (475)
+...||.-=..+...| ++++++++++......|+..+ |+.--..+ ... ++++++.++++.+.+.. ..+.
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny 144 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNH 144 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCH
Confidence 4456887777777788 999999999987765565544 44322222 334 78999999999999875 6688
Q ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHhccc---CCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcCCCCCHHHH
Q 038373 164 ELNNKLIEMYGKCCNTR--LARKVFDQLRK---RNLSSWHLMISGYAANGQ------GADGLMLFEQMRKTGPHPDKETF 232 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~--~A~~~f~~m~~---~~~~tyn~li~~~~~~g~------~~~A~~l~~~M~~~g~~pd~~t~ 232 (475)
.+++----.+.+.|+.+ ++.+.++.+.+ .|...|+--...+...|+ ++++++.++++..... -|...|
T Consensus 145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW 223 (306)
T 3dra_A 145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTW 223 (306)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHH
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHH
Confidence 88888888888889888 99999998875 477789887777777776 8999999999988653 378889
Q ss_pred HHHHHHHHccCCHHH-HHHHHHHHhhhCC-C-cCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCC-CHHHHHHH
Q 038373 233 LVVFAACASAEAVKE-GFLYFEIMKNDYG-I-VPGIEHYIAIIKVLGSAGHLIEAEEFVERMP--FEP-TVEVWEAL 303 (475)
Q Consensus 233 ~~li~~~~~~g~~~~-a~~~~~~m~~~~g-~-~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~--~~p-~~~t~~~l 303 (475)
+.+-..+.+.|+... ...+.....+. + . ..+......+.+.|.+.|+.++|.++++.+. ..| ...-|+..
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDL-EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEG-GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 888888888887444 55566665522 2 1 2356778899999999999999999999982 333 23445443
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.62 E-value=0.00036 Score=57.91 Aligned_cols=92 Identities=8% Similarity=-0.048 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK-----RN----LSSWHLMISGYAANGQGADGLMLFEQMRKT----GPHP-DKE 230 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~----~~tyn~li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~ 230 (475)
++..+...|...|++++|...|++..+ .+ ...|..+...|...|++++|.+.+++..+. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444444444555555444444321 11 234555555555666666666655554431 1111 123
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 231 TFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 231 t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
++..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555566666666666666665544
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.60 E-value=0.0016 Score=55.02 Aligned_cols=88 Identities=7% Similarity=-0.095 Sum_probs=40.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCCh
Q 038373 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQG 210 (475)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~ 210 (475)
+-..+.+.|++++|.+.|+...+.. ..+...|..+-.+|.+.|++++|...|++..+ | +...|..+-..|...|++
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Confidence 3333334444444444444443332 22344444444455555555555555544331 2 344555555555555555
Q ss_pred HHHHHHHHHHHH
Q 038373 211 ADGLMLFEQMRK 222 (475)
Q Consensus 211 ~~A~~l~~~M~~ 222 (475)
++|++.|++..+
T Consensus 96 ~~A~~~~~~al~ 107 (164)
T 3sz7_A 96 KGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.60 E-value=0.0015 Score=52.83 Aligned_cols=25 Identities=0% Similarity=-0.057 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQM 220 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M 220 (475)
.|..+...|...|++++|+..|++.
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444444444444444433
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.60 E-value=0.00084 Score=55.39 Aligned_cols=84 Identities=8% Similarity=-0.175 Sum_probs=36.0
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHH
Q 038373 137 SCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADG 213 (475)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A 213 (475)
.+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|+...+ | +...|..+-.+|...|++++|
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 105 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444444332 22334444444444444444444444443321 1 333444444444444444444
Q ss_pred HHHHHHHH
Q 038373 214 LMLFEQMR 221 (475)
Q Consensus 214 ~~l~~~M~ 221 (475)
.+.|++..
T Consensus 106 ~~~~~~al 113 (142)
T 2xcb_A 106 ESGFYSAR 113 (142)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.59 E-value=0.001 Score=53.90 Aligned_cols=98 Identities=10% Similarity=-0.091 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 92 NAQLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
..+...|..+-..+.+.|++++|+..|++.....| +...|..+-.++...|++++|...++...+.. ..+...+..+-
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 35678889999999999999999999998665444 46678888889999999999999999998875 45788999999
Q ss_pred HHHHHcCCHHHHHHHHHhcc
Q 038373 171 EMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~ 190 (475)
.+|.+.|++++|...|++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999998775
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.58 E-value=0.00064 Score=56.11 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 94 QLESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+...+..+-..+.+.|++++|...|++.....| +...|..+-.++.+.|++++|...|+...+.. +.+...+..+-.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 445666777789999999999999998766555 56668888888999999999999999998875 4567788889999
Q ss_pred HHHcCCHHHHHHHHHhcc
Q 038373 173 YGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~ 190 (475)
|...|++++|.+.|+...
T Consensus 96 ~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999999875
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.57 E-value=0.0014 Score=60.98 Aligned_cols=124 Identities=10% Similarity=-0.085 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHc
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD--VELNNKLIEMYGKC 176 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~Li~~~~k~ 176 (475)
-.....|...|++++|.++|......+|+....-.+-..+.+.+++++|+..++...+.. .|. ...+..|-.++.+.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 345667889999999999999988777866554444456778888888888887443322 111 23566667778888
Q ss_pred CCHHHHHHHHHhccc----CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373 177 CNTRLARKVFDQLRK----RN--LSSWHLMISGYAANGQGADGLMLFEQMRKT 223 (475)
Q Consensus 177 g~~~~A~~~f~~m~~----~~--~~tyn~li~~~~~~g~~~~A~~l~~~M~~~ 223 (475)
|++++|++.|++... |. ...+...-.++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888887642 21 225556666777788888888888887764
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.56 E-value=0.0014 Score=52.98 Aligned_cols=91 Identities=8% Similarity=-0.007 Sum_probs=44.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--CC--------HHHHHHH
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--RN--------LSSWHLM 200 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~--------~~tyn~l 200 (475)
+..+-..+.+.|++++|.+.|.+.++.. +-+..+|+.+-.+|.+.|++++|.+.|++..+ |+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444555555555555555554442 23344555555555555555555555554331 10 1244444
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 038373 201 ISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~ 222 (475)
-..|...|++++|++.|++-..
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555555444
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.55 E-value=0.00061 Score=55.24 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMR 221 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~ 221 (475)
.+.-|-+.|.+.|++++|...|++..+ | +...|+.+-.+|.+.|++++|++.|++..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444455555555555555544331 2 34445555555555555555555554443
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.54 E-value=0.00089 Score=51.71 Aligned_cols=90 Identities=6% Similarity=-0.118 Sum_probs=41.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C---CHHHHHHHHHHHHh
Q 038373 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R---NLSSWHLMISGYAA 206 (475)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~---~~~tyn~li~~~~~ 206 (475)
..+...+...|++++|...++...+.. ..+..++..+...|.+.|++++|...|++..+ | +...|..+...|.+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 333444444455555555555444432 22344444444455555555555555544331 1 23444444455555
Q ss_pred c-CChHHHHHHHHHHHH
Q 038373 207 N-GQGADGLMLFEQMRK 222 (475)
Q Consensus 207 ~-g~~~~A~~l~~~M~~ 222 (475)
. |++++|.+.|++...
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CSSCSHHHHHHHHHHGG
T ss_pred HhCCHHHHHHHHHHHhh
Confidence 5 555555555554443
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=0.0019 Score=52.76 Aligned_cols=93 Identities=11% Similarity=-0.056 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHH
Q 038373 194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD----KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHY 268 (475)
Q Consensus 194 ~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y 268 (475)
...|..+...+...|++++|++.|++..+. .|+ ...|..+...+...|++++|...++...+. .| +...+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~ 102 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKAL 102 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHHH
Confidence 344555555555555555555555554442 333 344444555555555555555555554421 22 23444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Q 038373 269 IAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~m 291 (475)
..+-..|.+.|+.++|.+.|++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555555555544
No 169
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0013 Score=52.69 Aligned_cols=95 Identities=9% Similarity=-0.067 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~ 173 (475)
...|..+-..+.+.|++++|++.|++.....| +...|..+-.++.+.|++++|...++...+.. +.+...|..+-.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34677777889999999999999998766555 56778899999999999999999999998875 45688999999999
Q ss_pred HHcCCHHHHHHHHHhcc
Q 038373 174 GKCCNTRLARKVFDQLR 190 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~ 190 (475)
.+.|++++|...|++..
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 99999999999998765
No 170
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.41 E-value=0.0024 Score=55.84 Aligned_cols=87 Identities=8% Similarity=-0.046 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHH
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIK 273 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~ 273 (475)
..|..+-.+|.+.|++++|+..+++..+.. ..+...|..+-.++...|++++|...|+...+. .| +...+..+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence 456666666777777777777777666542 224556666666666777777777776666522 23 3445555555
Q ss_pred HHHhcCCHHHHH
Q 038373 274 VLGSAGHLIEAE 285 (475)
Q Consensus 274 ~~~~~g~~~~A~ 285 (475)
.+...|+.+++.
T Consensus 165 ~~~~~~~~~~~~ 176 (198)
T 2fbn_A 165 CVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.37 E-value=0.0011 Score=53.26 Aligned_cols=91 Identities=14% Similarity=-0.008 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC 177 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g 177 (475)
..+-..+.+.|++++|+..|++.....| +...|..+-.++...|++++|...++...+.. ..+...+..|..+|.+.|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3444566777777777777777655444 44556666666677777777777777776654 334556666666666666
Q ss_pred CHHHHHHHHHhcc
Q 038373 178 NTRLARKVFDQLR 190 (475)
Q Consensus 178 ~~~~A~~~f~~m~ 190 (475)
++++|...|++..
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6777666666554
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.0084 Score=59.01 Aligned_cols=184 Identities=9% Similarity=-0.054 Sum_probs=129.2
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCC-C---------------HHHHHHHHHHHHHcCCHHHHHHHHHhccc-----CCH
Q 038373 136 DSCGNLKSIEMGKRVHELLRTSAFVK-D---------------VELNNKLIEMYGKCCNTRLARKVFDQLRK-----RNL 194 (475)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~---------------~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-----~~~ 194 (475)
..+.+.|++++|.+.|..+.+..-.. + ...+..|...|.+.|++++|.+.+....+ ++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34567899999999999998753211 1 12477889999999999999999987753 111
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCC---c
Q 038373 195 ----SSWHLMISGYAANGQGADGLMLFEQMRK----TGPHPD-KETFLVVFAACASAEAVKEGFLYFEIMKNDYGI---V 262 (475)
Q Consensus 195 ----~tyn~li~~~~~~g~~~~A~~l~~~M~~----~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~---~ 262 (475)
...+.+-..+...|+.++|.+++++... .+..+. ..++..+...+...|++++|..++........- .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1334444444567889999999988754 344444 347788899999999999999999876633211 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCchHHHHH
Q 038373 263 P-GIEHYIAIIKVLGSAGHLIEAEEFVERM-------PFEPT--VEVWEALRNFAQIHGDVELEDRA 319 (475)
Q Consensus 263 p-~~~~y~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~t~~~li~~~~~~g~~~~a~~~ 319 (475)
+ ....|..++..|...|++++|..++++. +..+. ...|..+...+...|+++.|...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~ 238 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY 238 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 2 2567889999999999999999998775 21111 23455555566667888666443
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.29 E-value=0.0014 Score=65.84 Aligned_cols=92 Identities=15% Similarity=-0.022 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAA 238 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~ 238 (475)
..+|+.+-.+|.+.|++++|...|++..+ .+...|..+-.+|...|++++|+..|++..+ +.| +...+..+-..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 45666666777777777777777766542 2556777777777777777777777777665 334 33456666666
Q ss_pred HHccCCHHHHH-HHHHHHh
Q 038373 239 CASAEAVKEGF-LYFEIMK 256 (475)
Q Consensus 239 ~~~~g~~~~a~-~~~~~m~ 256 (475)
+.+.++.+++. .++..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 66667666654 3455554
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.25 E-value=0.00049 Score=69.73 Aligned_cols=114 Identities=8% Similarity=-0.093 Sum_probs=81.1
Q ss_pred HHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373 104 SLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A 182 (475)
.+.+.|++++|++.|++.....| +..+|..+-.++.+.|++++|.+.+++..+.. ..+..++..+-.+|.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34567888888888887665444 45667888888888888888888888888764 44677888888888888888888
Q ss_pred HHHHHhccc--C-CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 038373 183 RKVFDQLRK--R-NLSSWHLMISG--YAANGQGADGLMLFE 218 (475)
Q Consensus 183 ~~~f~~m~~--~-~~~tyn~li~~--~~~~g~~~~A~~l~~ 218 (475)
.+.|++..+ | +...|..+-.+ +.+.|++++|+++++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888887653 3 34455555555 777788888888877
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.24 E-value=0.0059 Score=61.29 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-N---------------LSSWHLMISGYAANGQGADGLMLFEQMRKTG 224 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~---------------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g 224 (475)
...+..+-..|.+.|++++|...|++..+ | + ...|+.+-.+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44666777788888888888888876642 2 2 4678888888888888888888888877643
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHH-HHHHhC
Q 038373 225 PHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAE-EFVERM 291 (475)
Q Consensus 225 ~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~-~~~~~m 291 (475)
.-+...|..+-.++...|++++|...|+... .+.| +...+..+-..+.+.|+.++|. +++.+|
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2256677777788888888888888888776 2344 3456677777777777777665 345555
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.21 E-value=0.0025 Score=50.89 Aligned_cols=86 Identities=13% Similarity=0.024 Sum_probs=49.2
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhccc--CC----HHHHHHHHHHHHhc
Q 038373 137 SCGNLKSIEMGKRVHELLRTSAFVKDV---ELNNKLIEMYGKCCNTRLARKVFDQLRK--RN----LSSWHLMISGYAAN 207 (475)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~~----~~tyn~li~~~~~~ 207 (475)
.+...|++++|...++...+.. +.+. ..+..+..+|.+.|++++|...|+...+ |+ ...|..+...|.+.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3445555566655555555432 1111 3455555566666666666666665542 22 34566666667777
Q ss_pred CChHHHHHHHHHHHHc
Q 038373 208 GQGADGLMLFEQMRKT 223 (475)
Q Consensus 208 g~~~~A~~l~~~M~~~ 223 (475)
|++++|...|++....
T Consensus 90 g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7777777777776654
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.18 E-value=0.003 Score=50.56 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=42.4
Q ss_pred HHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFAACASAEAVK 246 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~g~~~ 246 (475)
..+.+.|++++|...|++..+ | +...|..+-..|...|++++|+..|++..+. .| +...+..+-.++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 344455555555555554432 2 3445555555555555555555555555442 22 3344455555555555555
Q ss_pred HHHHHHHHHh
Q 038373 247 EGFLYFEIMK 256 (475)
Q Consensus 247 ~a~~~~~~m~ 256 (475)
+|...++...
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.17 E-value=0.0016 Score=66.02 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRK-----TGP-HPDK-ETFLVVFAACASAEAVKEGFLYFEIMKN 257 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~-----~g~-~pd~-~t~~~li~~~~~~g~~~~a~~~~~~m~~ 257 (475)
+||.|-..|...|++++|+.++++..+ .|- .|++ .+.+.+-.++...+.+++|+.++..+++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554332 121 1222 2333444444555556666666655553
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.15 E-value=0.0018 Score=51.27 Aligned_cols=59 Identities=8% Similarity=0.011 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m 255 (475)
.|..+...|.+.|++++|+..|++..+.... +...+..+..++...|++++|...++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444444444444444443332111 2333333334444444444444444433
No 180
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.11 E-value=0.019 Score=58.12 Aligned_cols=199 Identities=12% Similarity=0.016 Sum_probs=130.7
Q ss_pred HHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHhc
Q 038373 112 REAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA-RKVFDQL 189 (475)
Q Consensus 112 ~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A-~~~f~~m 189 (475)
+++..+|++..... .+...|-..+.-+.+.|+++.|..++++..+. +.+...+. .|+...+.++. ..+.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 34566777755422 34556666677777889999999999999988 33333322 33333221221 1111111
Q ss_pred c------------cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHH
Q 038373 190 R------------KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL--VVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 190 ~------------~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~--~li~~~~~~g~~~~a~~~~~~m 255 (475)
. ......|-..+.-+.+.|..+.|..+|+.....+ .+...|. +.+.... .++.+.|..+|+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~a 346 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSG 346 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHH
Confidence 0 0112467777777777888999999999882222 2333443 3333322 23699999999998
Q ss_pred hhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 256 KNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 256 ~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
.+.++-.| ..+...++...+.|+.+.|..+|++.. .....|...+..=...|+.+.+..+++..
T Consensus 347 l~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 347 LLKHPDST--LLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 86543333 346678888899999999999999983 36888999999888899997776655544
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.11 E-value=0.0014 Score=63.00 Aligned_cols=143 Identities=13% Similarity=-0.062 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
...|..+-..+.+.|++++|+..|++.....|+... +...++.+++...+. ...|+.+-.+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 345666666777888888888888876654455432 122222332222111 125677777778
Q ss_pred HcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH-HHccCCHHHHH
Q 038373 175 KCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE-TFLVVFAA-CASAEAVKEGF 249 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~li~~-~~~~g~~~~a~ 249 (475)
+.|++++|...|++..+ | +...|..+-.+|...|++++|+..|++..+ +.|+.. .+..+... ....+..+++.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776542 3 566777788888888888888888877654 334332 33333333 12345566677
Q ss_pred HHHHHHh
Q 038373 250 LYFEIMK 256 (475)
Q Consensus 250 ~~~~~m~ 256 (475)
.+|..|.
T Consensus 320 ~~~~~~l 326 (338)
T 2if4_A 320 EMYKGIF 326 (338)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 7777765
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.10 E-value=0.0023 Score=64.84 Aligned_cols=118 Identities=8% Similarity=-0.114 Sum_probs=85.3
Q ss_pred HHcCCHHHHHHHHHhccc----------CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHH
Q 038373 174 GKCCNTRLARKVFDQLRK----------RN-LSSWHLMISGYAANGQGADGLMLFEQMRKT-----G-PHPD-KETFLVV 235 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~----------~~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~t~~~l 235 (475)
-..|++++|+.++++..+ |+ ..++|.|...|...|++++|..++++..+- | -.|+ ..+|+.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 356778888777765531 22 237888899999999999998888886541 2 1233 3578999
Q ss_pred HHHHHccCCHHHHHHHHHHHhh----hCCCc-CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 236 FAACASAEAVKEGFLYFEIMKN----DYGIV-PG-IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 236 i~~~~~~g~~~~a~~~~~~m~~----~~g~~-p~-~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
-..|...|++++|+.++++..+ .+|-. |+ ..+.+.|-..+...|++++|+.++.++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876542 23432 22 345667778888889999999999887
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.09 E-value=0.00091 Score=53.09 Aligned_cols=83 Identities=14% Similarity=-0.024 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHH
Q 038373 141 LKSIEMGKRVHELLRTSAF--VKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLM 215 (475)
Q Consensus 141 ~~~~~~a~~~~~~m~~~g~--~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~ 215 (475)
.|++++|...|+...+.+. +.+..++..|-..|.+.|++++|...|++..+ | +...|..+..+|.+.|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3555566666666655431 22345566666666667777777777766542 3 45566667777777777777777
Q ss_pred HHHHHHHc
Q 038373 216 LFEQMRKT 223 (475)
Q Consensus 216 l~~~M~~~ 223 (475)
.|++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666553
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.08 E-value=0.015 Score=46.09 Aligned_cols=87 Identities=11% Similarity=-0.026 Sum_probs=51.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhccc--CC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 038373 169 LIEMYGKCCNTRLARKVFDQLRK--RN-L---SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD----KETFLVVFAA 238 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~~--~~-~---~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd----~~t~~~li~~ 238 (475)
+...+.+.|++++|...|++..+ |+ . ..|..+...|.+.|++++|...|++..... |+ ...+..+-.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 33455566667777666666542 32 2 255556666666666666666666665532 22 3445555566
Q ss_pred HHccCCHHHHHHHHHHHhh
Q 038373 239 CASAEAVKEGFLYFEIMKN 257 (475)
Q Consensus 239 ~~~~g~~~~a~~~~~~m~~ 257 (475)
+...|++++|...|+.+.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666653
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.06 E-value=0.0057 Score=59.61 Aligned_cols=116 Identities=10% Similarity=0.029 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccc-------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRK-------------------RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGP 225 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~-------------------~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~ 225 (475)
.+..+-..|.+.|++++|.+.|++..+ .+..+|+.+-.+|.+.|++++|++.+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 355555666677777777776665432 13345666666666666666666666666553
Q ss_pred CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHH
Q 038373 226 HP-DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 226 ~p-d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~ 285 (475)
.| +...|..+-.++...|++++|...|+...+ +.| +...+..+-..+.+.++.+++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE---IAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23 344555566666666666666666665552 223 3344445555555555555443
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.96 E-value=0.0081 Score=50.39 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 164 ELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.+|..+-.+|.+.|++++|...++...+ | +...|..+-.+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4455555555556666666655554432 2 444555555666666666666666655554
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.91 E-value=0.0036 Score=60.18 Aligned_cols=60 Identities=5% Similarity=-0.103 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.|+.+-.+|.+.|++++|+..|++..+.. .-+...|..+-.++...|++++|...|+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555544421 1134445555555555555555555555444
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0021 Score=49.76 Aligned_cols=94 Identities=6% Similarity=-0.027 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC-------HH
Q 038373 194 LSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG-------IE 266 (475)
Q Consensus 194 ~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-------~~ 266 (475)
...|..+-..+.+.|++++|++.|++..+.. ..+...|..+-.++.+.|++++|...++... .+.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHHH
Confidence 3456666666777777777777777766542 1245566666667777777777777777766 23443 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 267 HYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 267 ~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.+..+-..+...|+.++|.+.|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 3444445555555555555555444
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.88 E-value=0.011 Score=57.43 Aligned_cols=87 Identities=11% Similarity=-0.016 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038373 162 DVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHP-DKETFLVVFA 237 (475)
Q Consensus 162 ~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~li~ 237 (475)
+..+|+.+-.+|.+.|++++|...+++..+ | +...|..+-.+|...|++++|++.|++..+. .| +...+..+-.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456778888888889999999988887653 3 5678888888899999999999999888774 34 4556666666
Q ss_pred HHHccCCHHHHHH
Q 038373 238 ACASAEAVKEGFL 250 (475)
Q Consensus 238 ~~~~~g~~~~a~~ 250 (475)
.+...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.86 E-value=0.016 Score=48.44 Aligned_cols=61 Identities=11% Similarity=0.045 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 195 SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 195 ~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
..|..+-.+|.+.|++++|+..+++..+.. .-+...|..+-.++...|++++|...|+...
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 456666666666666666666666655532 1234455566666666666666666666555
No 191
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.84 E-value=0.048 Score=52.24 Aligned_cols=197 Identities=11% Similarity=-0.020 Sum_probs=137.3
Q ss_pred CCHHHHHHHHHHHHHcC-ChHHHHHHHHhcccCCCCHH-HHHHHHHHHhcc-C-CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEG-KVREAIEYMGQDASASAGYD-VFSSLLDSCGNL-K-SIEMGKRVHELLRTSAFVKDVELNNK 168 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g-~~~~A~~l~~~~~~~~p~~~-t~~~ll~~~~~~-~-~~~~a~~~~~~m~~~g~~p~~~~~~~ 168 (475)
-+...||.-=..+...| .+++++++++.+....|... +|+.---.+.+. + +++++.++++.+.+.. ..|..+++-
T Consensus 86 ~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~ 164 (349)
T 3q7a_A 86 AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAY 164 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34556777666777778 59999999999877666554 466555555554 5 7899999999998765 557777776
Q ss_pred HHHHHHHcCCHH--------HHHHHHHhccc---CCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHH
Q 038373 169 LIEMYGKCCNTR--------LARKVFDQLRK---RNLSSWHLMISGYAANGQ-------GADGLMLFEQMRKTGPHPDKE 230 (475)
Q Consensus 169 Li~~~~k~g~~~--------~A~~~f~~m~~---~~~~tyn~li~~~~~~g~-------~~~A~~l~~~M~~~g~~pd~~ 230 (475)
-.-.+.+.|..+ ++.+.++++.+ .|...|+-.-..+.+.++ ++++++.++++..... -|..
T Consensus 165 R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~S 243 (349)
T 3q7a_A 165 LHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVS 243 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHH
Confidence 555555555555 88888888764 477899998888888776 6899999999887542 2677
Q ss_pred HHHHHHHHHHccCCH--------------------HHHHHHHHHHhhhCC----CcCCHHHHHHHHHHHHhcCCHHHHHH
Q 038373 231 TFLVVFAACASAEAV--------------------KEGFLYFEIMKNDYG----IVPGIEHYIAIIKVLGSAGHLIEAEE 286 (475)
Q Consensus 231 t~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~g----~~p~~~~y~~li~~~~~~g~~~~A~~ 286 (475)
.|+.+-..+.+.|.- ....+....+....+ -.+.......|.+.|...|+.++|.+
T Consensus 244 aW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~ 323 (349)
T 3q7a_A 244 AWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAK 323 (349)
T ss_dssp HHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHH
Confidence 787766666555542 333333333332110 02466777899999999999999999
Q ss_pred HHHhC
Q 038373 287 FVERM 291 (475)
Q Consensus 287 ~~~~m 291 (475)
+++.+
T Consensus 324 ~~~~l 328 (349)
T 3q7a_A 324 VFEKL 328 (349)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0014 Score=50.86 Aligned_cols=61 Identities=20% Similarity=0.042 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038373 96 ESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRT 156 (475)
Q Consensus 96 ~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 156 (475)
..|..+-..+.+.|++++|++.|++.....| +...+..+-.++.+.|++++|.+.++...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444455555555555555554333222 333344444444555555555555555443
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.62 E-value=0.049 Score=56.17 Aligned_cols=115 Identities=12% Similarity=0.106 Sum_probs=56.2
Q ss_pred HcCC-hHHHHHHHHhcccCCCCHHH-HHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 107 KEGK-VREAIEYMGQDASASAGYDV-FSSLLDSCGNLKS----------IEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 107 ~~g~-~~~A~~l~~~~~~~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
+.|. -++|++.+++.....|+..+ |+.-=.++.+.++ ++++.+.++.+.+.. .-+..+|+----.+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3443 45677777776665565554 4433233333333 555555555555443 334444444444444
Q ss_pred HcC--CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 038373 175 KCC--NTRLARKVFDQLRK---RNLSSWHLMISGYAANG-QGADGLMLFEQMRK 222 (475)
Q Consensus 175 k~g--~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g-~~~~A~~l~~~M~~ 222 (475)
+.| ++++|.+.++++.+ +|..+|+.--..+.+.| .++++++.++++.+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 444 44555555554442 24445554444444444 44555555554444
No 194
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.52 E-value=0.16 Score=54.18 Aligned_cols=155 Identities=14% Similarity=0.126 Sum_probs=111.5
Q ss_pred HHHHcCChHHHHH-HHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 038373 104 SLCKEGKVREAIE-YMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLA 182 (475)
Q Consensus 104 ~~~~~g~~~~A~~-l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A 182 (475)
.....+++++|.+ ++..+ |+...+..++..+-+.|..+.|.++.+.-. .-.......|++++|
T Consensus 608 ~~~~~~~~~~a~~~~l~~i----~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV----EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC----CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHhcC----CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 3446899999988 65433 213344778888888999999887764221 113456778999999
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373 183 RKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV 262 (475)
Q Consensus 183 ~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 262 (475)
.++.+.+. +...|..|-..+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+....+ |
T Consensus 672 ~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~-- 737 (814)
T 3mkq_A 672 RDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G-- 737 (814)
T ss_dssp HHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T--
T ss_pred HHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C--
Confidence 99987774 557999999999999999999999998853 334444555577777766665555422 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038373 263 PGIEHYIAIIKVLGSAGHLIEAEEFVERMP 292 (475)
Q Consensus 263 p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 292 (475)
-++.-...|.+.|++++|.+++.+++
T Consensus 738 ----~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 ----KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ----chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 24556666888888888888888886
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.51 E-value=0.02 Score=48.15 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcc---------cC-CHHHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLR---------KR-NLSSW----HLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~---------~~-~~~ty----n~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.|+.+-.++.+.|++++|...|++.. .| +...| ...-.++...|++++|+..|++-.+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555556666666666655555432 23 33466 7777788888888888888887654
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.51 E-value=0.02 Score=46.93 Aligned_cols=106 Identities=8% Similarity=-0.060 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc-CCHHHHHHHHHHHHh----cCChHHHHHHH
Q 038373 143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK-RNLSSWHLMISGYAA----NGQGADGLMLF 217 (475)
Q Consensus 143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~-~~~~tyn~li~~~~~----~g~~~~A~~l~ 217 (475)
++++|.+.|+...+.| .++.. |-.+|...+.+++|.+.|++.-+ -+...++.|-..|.. .++.++|++.|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 3444444444444444 22222 33333333444444444443332 233444444444444 44455555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHh
Q 038373 218 EQMRKTGPHPDKETFLVVFAACAS----AEAVKEGFLYFEIMK 256 (475)
Q Consensus 218 ~~M~~~g~~pd~~t~~~li~~~~~----~g~~~~a~~~~~~m~ 256 (475)
++-.+.| +...+..|-..|.. .++.++|.+.|+...
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 5544433 23334444444444 455555555555544
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.45 E-value=0.016 Score=44.34 Aligned_cols=58 Identities=16% Similarity=0.074 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038373 163 VELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQM 220 (475)
Q Consensus 163 ~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M 220 (475)
...+..+-..|.+.|++++|...|++..+ | +...|..+-.+|.+.|++++|.+.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444555555555555555544432 2 3334555555555555555555555443
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.44 E-value=0.013 Score=45.77 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 147 a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
+...++...+.. ..+...+..+-..|.+.|++++|...|++..+ | +...|..+-..|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 23455555566666666666666666655432 2 344566666666666666666666665543
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.42 E-value=0.026 Score=47.48 Aligned_cols=88 Identities=8% Similarity=-0.107 Sum_probs=48.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhccc--CC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCC
Q 038373 169 LIEMYGKCCNTRLARKVFDQLRK--RN-------------LSSWHLMISGYAANGQGADGLMLFEQMRKT-----GPHPD 228 (475)
Q Consensus 169 Li~~~~k~g~~~~A~~~f~~m~~--~~-------------~~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g~~pd 228 (475)
+-..+.+.|++++|...|++..+ |+ ...|+.+-.++.+.|++++|+..+++-++. -+.||
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 33444555555555555554331 22 226777777777777777777777666552 11454
Q ss_pred H-HHH----HHHHHHHHccCCHHHHHHHHHHHh
Q 038373 229 K-ETF----LVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 229 ~-~t~----~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
. ..| ...-.++...|++++|...|+...
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 3 244 555556666666666666665544
No 200
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.32 E-value=0.4 Score=45.54 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=130.4
Q ss_pred hccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhccc---CCHHHHHHHHHHH
Q 038373 139 GNLKSI-EMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN----------TRLARKVFDQLRK---RNLSSWHLMISGY 204 (475)
Q Consensus 139 ~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~----------~~~A~~~f~~m~~---~~~~tyn~li~~~ 204 (475)
.+.|.+ ++|.++.+.+.... +-+..++|.-=..+...|. ++++..+++.+.. ++..+|+.--..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345555 47899999998764 2334445533222222222 6788888888763 4777999888888
Q ss_pred HhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhc---
Q 038373 205 AANGQ--GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA-VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSA--- 278 (475)
Q Consensus 205 ~~~g~--~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~--- 278 (475)
.+.|+ +++++++++.|.+... -|...|+.--..+...|. ++++.+.++.+.+. ... |...|+..-..+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSC-CHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CCC-CHHHHHHHHHHHHHhhhc
Confidence 88884 8999999999998653 378888888778888888 68999999999854 332 566666555555544
Q ss_pred -----------CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc-----------CCchHHHHHHHHHhccCCCCh
Q 038373 279 -----------GHLIEAEEFVERM--PFEPTVEVWEALRNFAQIH-----------GDVELEDRAEELLGDLDPSKA 331 (475)
Q Consensus 279 -----------g~~~~A~~~~~~m--~~~p~~~t~~~li~~~~~~-----------g~~~~a~~~~~~l~~~~~~~~ 331 (475)
+.++++.+.+++. -..-|...|+-+-..+.+. +.++.+.+.++.+.+++|+..
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 4578888888877 2234778888665544443 345566777777778887753
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.30 E-value=0.038 Score=45.16 Aligned_cols=111 Identities=11% Similarity=-0.007 Sum_probs=85.7
Q ss_pred cCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 038373 108 EGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGK----CCNTRLA 182 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k----~g~~~~A 182 (475)
.+++++|++.|++....+ |+.. |-..|...+.+++|.+.|+...+.| +...++.|-.+|.+ .++.++|
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356788889888766555 4433 5555666677888999999888875 56778888888888 7899999
Q ss_pred HHHHHhccc-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 038373 183 RKVFDQLRK-RNLSSWHLMISGYAA----NGQGADGLMLFEQMRKTGP 225 (475)
Q Consensus 183 ~~~f~~m~~-~~~~tyn~li~~~~~----~g~~~~A~~l~~~M~~~g~ 225 (475)
.+.|++.-+ -+...+..|-..|.. .++.++|++.|++-.+.|.
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999987654 467788888888888 7889999999988887764
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.25 E-value=0.035 Score=40.73 Aligned_cols=78 Identities=14% Similarity=0.054 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 95 LESLDVNLLSLCKEGKVREAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMY 173 (475)
Q Consensus 95 ~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~ 173 (475)
...|..+-..+.+.|++++|+..|++.....| +...+..+-.++.+.|++++|.+.+++..+.. ..+..++..+-..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34455555556666666666666655443222 33344555555555555555555555555432 22334444443333
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.23 E-value=0.032 Score=43.48 Aligned_cols=77 Identities=6% Similarity=-0.131 Sum_probs=61.5
Q ss_pred HHHHHHHhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 113 EAIEYMGQDASASA-GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 113 ~A~~l~~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
+|++.|++.....| +...+..+-..+...|++++|...++...+.. ..+...|..+-.+|.+.|+.++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677776655444 55667888888889999999999999988765 4567788889999999999999999988764
No 204
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.08 E-value=0.35 Score=48.75 Aligned_cols=183 Identities=16% Similarity=0.041 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---------CCCC--
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTS---------AFVK-- 161 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---------g~~p-- 161 (475)
.+...|-..+.-+.+.|++++|.++|++.... |+...+-. .++.....++. ++.+.+. +..+
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhccc
Confidence 33667877788888999999999999987766 76544322 22222122221 2222211 0001
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCC--HHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 038373 162 -DVELNNKLIEMYGKCCNTRLARKVFDQLRKRN--LSSWH--LMISGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVV 235 (475)
Q Consensus 162 -~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~--~~tyn--~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~l 235 (475)
...+|-..++.+-+.+.++.|+.+|+....++ ...|- +.+.-.+ .++.+.|..+|+...+.- |+ ...+...
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~y 360 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 12456667777777889999999999885443 22332 3333222 346999999999988753 33 3345566
Q ss_pred HHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 236 FAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 236 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
++-..+.|+.+.|..+|+... + ....|...++.-...|+.+.+.+++++.
T Consensus 361 id~e~~~~~~~~aR~l~er~~-k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE-K-----TSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC-C-----BHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777788999999999999874 2 4677888888888889999999988776
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.87 E-value=0.085 Score=38.53 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038373 164 ELNNKLIEMYGKCCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAAC 239 (475)
Q Consensus 164 ~~~~~Li~~~~k~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~ 239 (475)
..+..+-..|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+... -+...+..+-..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 3455555556666666666666655432 2445566666666666666666666666655321 1334444444443
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.74 E-value=0.44 Score=49.00 Aligned_cols=166 Identities=11% Similarity=0.005 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhccc---CCHHHHHHHHHHHHhcC-
Q 038373 143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN----------TRLARKVFDQLRK---RNLSSWHLMISGYAANG- 208 (475)
Q Consensus 143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~----------~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g- 208 (475)
.-++|.+.++.+.+.. .-+..+|+.-=..+.+.|+ +++|.+.++.+.+ ++..+|+.--..+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 3467888898888765 3455666665555656666 8999999998874 46779999888888999
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhc-------
Q 038373 209 -QGADGLMLFEQMRKTGPHPDKETFLVVFAACASAE-AVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSA------- 278 (475)
Q Consensus 209 -~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~------- 278 (475)
+++++++.+++|.+.... |...|+.--..+.+.| .++++.+.++.+.+ ..| |...|+..-..+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhccccccc
Confidence 669999999999997543 7889998888888888 89999999998883 233 566777666655553
Q ss_pred -------CCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCc
Q 038373 279 -------GHLIEAEEFVERM-PFE-PTVEVWEALRNFAQIHGDV 313 (475)
Q Consensus 279 -------g~~~~A~~~~~~m-~~~-p~~~t~~~li~~~~~~g~~ 313 (475)
+.+++|.+.+++. ... -|...|+-+-..+.+.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 5678898888776 223 3677888877666665553
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.73 E-value=0.05 Score=54.00 Aligned_cols=80 Identities=6% Similarity=-0.098 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHhccc-------C---CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHH
Q 038373 177 CNTRLARKVFDQLRK-------R---NL-SSWHLMISGYAANGQGADGLMLFEQMRKT-----G-PHPD-KETFLVVFAA 238 (475)
Q Consensus 177 g~~~~A~~~f~~m~~-------~---~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~t~~~li~~ 238 (475)
|++++|..++++..+ + ++ .++|.|...|...|++++|+.++++..+- | -.|+ ..+|+.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 456666666654321 1 22 36777777777777777777777776531 2 1233 3467777777
Q ss_pred HHccCCHHHHHHHHHHHh
Q 038373 239 CASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 239 ~~~~g~~~~a~~~~~~m~ 256 (475)
|...|++++|+.++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777777776544
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.50 E-value=0.11 Score=39.34 Aligned_cols=60 Identities=15% Similarity=-0.016 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 038373 129 DVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQL 189 (475)
Q Consensus 129 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m 189 (475)
..+..+-.++.+.|++++|...|+...+.. ..+...|..|-.+|.+.|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444555555555555555555555443 223445555555566666666666555543
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.39 E-value=0.045 Score=54.29 Aligned_cols=83 Identities=7% Similarity=0.107 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHH---cCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhh----hCCC-cCC-HHHHHHHHHHH
Q 038373 209 QGADGLMLFEQMRK---TGPHPD----KETFLVVFAACASAEAVKEGFLYFEIMKN----DYGI-VPG-IEHYIAIIKVL 275 (475)
Q Consensus 209 ~~~~A~~l~~~M~~---~g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~g~-~p~-~~~y~~li~~~ 275 (475)
++++|+.++++..+ .-+.|+ ..|++.|..+|...|++++|+.++++..+ .+|- -|+ ..+|+.|-..|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 57788888877654 223333 35899999999999999999999887652 1332 233 46789999999
Q ss_pred HhcCCHHHHHHHHHhC
Q 038373 276 GSAGHLIEAEEFVERM 291 (475)
Q Consensus 276 ~~~g~~~~A~~~~~~m 291 (475)
...|++++|+.++++.
T Consensus 393 ~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 393 MGLENKAAGEKALKKA 408 (433)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHH
Confidence 9999999999998876
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.35 E-value=0.059 Score=53.45 Aligned_cols=85 Identities=7% Similarity=-0.029 Sum_probs=51.9
Q ss_pred HHHHcCCHHHHHHHHHhccc-------C---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCC-HHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLRK-------R---N-LSSWHLMISGYAANGQGADGLMLFEQMRKT-----G-PHPD-KETFL 233 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~-------~---~-~~tyn~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~pd-~~t~~ 233 (475)
-+.+.|++++|..++++..+ + + ..+++.|...|...|++++|+.++++...- | -.|+ ..+|+
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 34456667777776665431 1 1 236777777777777777777777765431 1 1222 34677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHh
Q 038373 234 VVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 234 ~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.|-..|...|++++|+.++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 77777777777777777666544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.30 E-value=0.55 Score=45.04 Aligned_cols=136 Identities=7% Similarity=-0.024 Sum_probs=73.9
Q ss_pred CCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH----cC----C---HHHHHHHHHh
Q 038373 126 AGYDVFSSLLDSCGNL-----KSIEMGKRVHELLRTSAFVKD-VELNNKLIEMYGK----CC----N---TRLARKVFDQ 188 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~p~-~~~~~~Li~~~~k----~g----~---~~~A~~~f~~ 188 (475)
.|...|...+.+.... .++.+|..+|++..+. .|+ ...|..+--+|.- .+ . +..|.+-...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3555677777665422 3457888888888876 454 3444443333321 00 0 1111111111
Q ss_pred cc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHH
Q 038373 189 LR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIE 266 (475)
Q Consensus 189 m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 266 (475)
+. ..+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.+++.. .+.|...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al---rL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF---NLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCcC
Confidence 11 2255566666555555677777777777766654 666666555566666677777776666655 2345444
Q ss_pred HH
Q 038373 267 HY 268 (475)
Q Consensus 267 ~y 268 (475)
||
T Consensus 345 t~ 346 (372)
T 3ly7_A 345 TL 346 (372)
T ss_dssp HH
T ss_pred hH
Confidence 43
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.29 E-value=0.035 Score=46.62 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcc--cC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 179 TRLARKVFDQLR--KR-NLSSWHLMISGYAAN-----------GQGADGLMLFEQMRKTGPHPDKETFLVVFAA 238 (475)
Q Consensus 179 ~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~-----------g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~ 238 (475)
+++|...|++.. .| +..+|+.+-.+|... |++++|++.|++..+ +.|+...|...+..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 456666666544 23 444666666666655 478888888888777 46776666555554
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.05 E-value=1.2 Score=47.23 Aligned_cols=145 Identities=11% Similarity=0.000 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC 177 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g 177 (475)
...++..+.+.|.+++|+++.+. |+ .-| ......|++++|.++.+.+ .+...|..|-..+.+.|
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~-----~~-~~f----~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPD-----QD-QKF----ELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCC-----HH-HHH----HHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCChHHheecCCC-----cc-hhe----ehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence 36677778888888888877642 11 112 2345679999999986543 46789999999999999
Q ss_pred CHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373 178 NTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKN 257 (475)
Q Consensus 178 ~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 257 (475)
+++.|.++|..+.. |..+..-|...|+.+...+ +.......|+++.|..++...-
T Consensus 696 ~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~-------------------~~~~a~~~~~~~~A~~~~~~~g- 750 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVT-------------------LAKDAETTGKFNLAFNAYWIAG- 750 (814)
T ss_dssp CHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHH-------------------HHHHHHHTTCHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHH-------------------HHHHHHHcCchHHHHHHHHHcC-
Confidence 99999999887654 3334444444555554333 3344455667777777765443
Q ss_pred hCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038373 258 DYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP 292 (475)
Q Consensus 258 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 292 (475)
+ +...+++|.+.|++++|..+-+..+
T Consensus 751 ~---------~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 751 D---------IQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp C---------HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred C---------HHHHHHHHHHcCChHHHHHHHHHhC
Confidence 1 4567788888899999999888875
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.97 E-value=0.089 Score=52.14 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=68.8
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhhh----CCC-cCC-HHHHHH
Q 038373 204 YAANGQGADGLMLFEQMRKT---GPHPD----KETFLVVFAACASAEAVKEGFLYFEIMKND----YGI-VPG-IEHYIA 270 (475)
Q Consensus 204 ~~~~g~~~~A~~l~~~M~~~---g~~pd----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----~g~-~p~-~~~y~~ 270 (475)
+.+.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++...- +|- -|+ ..+|+.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44678999999999988753 23333 358899999999999999999998876521 232 333 567899
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 038373 271 IIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~m 291 (475)
|-..|...|++++|+.++++.
T Consensus 377 La~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999988876
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.53 E-value=0.63 Score=44.63 Aligned_cols=140 Identities=9% Similarity=-0.058 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHH--HcCC---hHHHHHHHHhcccCCCCH-HHHHHHHHHHhc---cC--CHHHHH---HHHHHHHH-
Q 038373 92 NAQLESLDVNLLSLC--KEGK---VREAIEYMGQDASASAGY-DVFSSLLDSCGN---LK--SIEMGK---RVHELLRT- 156 (475)
Q Consensus 92 ~~~~~~~n~li~~~~--~~g~---~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~---~~--~~~~a~---~~~~~m~~- 156 (475)
..|...|...+.+.. ..+. ..+|..+|++.....|+- ..|..+--++.- .+ .-.... +.+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 456667887777643 3333 578999999987766763 334433333321 11 111111 12221111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038373 157 SAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR--KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFL 233 (475)
Q Consensus 157 ~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~--~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 233 (475)
..-..+..+|.++-..+...|++++|...+++.. .++...|..+-..+.-.|++++|.+.|++-.. +.|...||.
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 1226688899998887777899999999999876 57877887888889999999999999988777 457766763
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.85 E-value=0.26 Score=36.72 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHP-DKE-TFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~p-d~~-t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.+.+.|++++|++.|++..+.. | +.. .|..+-.++...|++++|.+.|+...
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555566666555555432 2 233 45555555555566666666555555
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.84 E-value=0.13 Score=43.10 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038373 177 CNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQ----------GADGLMLFEQMRKTGPHP-DKETFLVVFAACASA 242 (475)
Q Consensus 177 g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~----------~~~A~~l~~~M~~~g~~p-d~~t~~~li~~~~~~ 242 (475)
+.+++|.+.|+... .| +...|+.+-.++...|+ +++|+..|++..+- .| +..+|..+-.+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHh
Confidence 34555555555443 12 44455555555555444 34666666666653 34 344566666666555
Q ss_pred C-----------CHHHHHHHHHHHh
Q 038373 243 E-----------AVKEGFLYFEIMK 256 (475)
Q Consensus 243 g-----------~~~~a~~~~~~m~ 256 (475)
| ++++|.+.|++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHH
Confidence 3 4555555555554
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.41 E-value=0.45 Score=35.32 Aligned_cols=54 Identities=13% Similarity=0.128 Sum_probs=37.0
Q ss_pred HHHHHHcCCHHHHHHHHHhccc--C-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038373 170 IEMYGKCCNTRLARKVFDQLRK--R-NLS-SWHLMISGYAANGQGADGLMLFEQMRKT 223 (475)
Q Consensus 170 i~~~~k~g~~~~A~~~f~~m~~--~-~~~-tyn~li~~~~~~g~~~~A~~l~~~M~~~ 223 (475)
...|.+.|++++|...|++..+ | +.. .|..+-..|...|++++|++.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455666777777777776542 3 455 6777777777777777777777777664
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.17 E-value=3.9 Score=33.00 Aligned_cols=65 Identities=6% Similarity=-0.028 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCc
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIV 262 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~ 262 (475)
-.+.-+..+...|+-++-.++..++.. ..+|+......+-.||.+.|+..++.+++.+.-++ |++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 345556666777777777777777533 34566667777777777777777777777776643 653
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.77 E-value=1.2 Score=36.77 Aligned_cols=78 Identities=5% Similarity=-0.037 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhcccCC-----HHHHHHHHHHHHhcCChHHHHH
Q 038373 144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC---NTRLARKVFDQLRKRN-----LSSWHLMISGYAANGQGADGLM 215 (475)
Q Consensus 144 ~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g---~~~~A~~~f~~m~~~~-----~~tyn~li~~~~~~g~~~~A~~ 215 (475)
+..+.+-|.+..+.| .++..+--.+--++++.+ +++++..+|++.-+.+ ...+=.|--+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555555 255555555666666665 4556666666554322 1122233445566666777776
Q ss_pred HHHHHHH
Q 038373 216 LFEQMRK 222 (475)
Q Consensus 216 l~~~M~~ 222 (475)
.++...+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666665
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.65 E-value=5.6 Score=33.68 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=84.8
Q ss_pred HHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038373 171 EMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFL 250 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~ 250 (475)
+....+|+++.|.++.+++ .+...|..|-......|+++-|.+.|..... |..+.--|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788899998887776 4567899999999999999999999887642 2233334445667666555
Q ss_pred HHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 251 YFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 251 ~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
+-+....+ | -+|.-...+.-.|+++++.++|.+.+.-|... -....+|.-+.|++..+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 54443322 2 25666677778999999999999987433221 1223367665555554443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.57 E-value=1.2 Score=36.94 Aligned_cols=83 Identities=13% Similarity=0.109 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHhhhCCCcC--CHHHHHHHHHHHHhcCCHHHHH
Q 038373 211 ADGLMLFEQMRKTGPHPDKETFLVVFAACASAE---AVKEGFLYFEIMKNDYGIVP--GIEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 211 ~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~~g~~p--~~~~y~~li~~~~~~g~~~~A~ 285 (475)
..+.+-|.+....|. ++..+--.+-.++++.. ++++|..+++...++ . .| +....-.|--+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445555655555554 56555555666777766 566787777777744 2 23 1222223334567777777777
Q ss_pred HHHHhC-CCCCC
Q 038373 286 EFVERM-PFEPT 296 (475)
Q Consensus 286 ~~~~~m-~~~p~ 296 (475)
+.|+.. .++|+
T Consensus 92 ~y~~~lL~ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhcCCC
Confidence 777766 44453
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.90 E-value=2.1 Score=31.92 Aligned_cols=61 Identities=7% Similarity=-0.079 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHhccc--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 162 DVELNNKLIEMYGKCCN---TRLARKVFDQLRK--R-NLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 162 ~~~~~~~Li~~~~k~g~---~~~A~~~f~~m~~--~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
|...+..+-.++...++ .++|..+|++..+ | ++.++..+-..+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433332 4555555554432 2 344555555555556666666666665554
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.18 E-value=2.9 Score=31.65 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.|..|..+|.+.|++++|+.++++..+
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344444444444444444444444433
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.85 E-value=6 Score=36.45 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcc-CCHHHHHHHHHHHh
Q 038373 196 SWHLMISGYAAN-----GQGADGLMLFEQMRKTGPHP--DKETFLVVFAACASA-EAVKEGFLYFEIMK 256 (475)
Q Consensus 196 tyn~li~~~~~~-----g~~~~A~~l~~~M~~~g~~p--d~~t~~~li~~~~~~-g~~~~a~~~~~~m~ 256 (475)
.|..|..-|.+. |+.++|.+.|++-.+- .| +..++...-..++.. |+.+++.+.+++..
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555555555552 5566666666555552 23 234444455555553 55666666655555
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.41 E-value=2.1 Score=32.47 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 266 EHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 266 ~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
..|..|..+|.+.|++++|..++++.
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34445555555555555555555544
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=86.03 E-value=15 Score=31.07 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=81.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 038373 139 GNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFE 218 (475)
Q Consensus 139 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~ 218 (475)
.+.|+++.|.++-+++ -+...|..|-+...+.|+++-|++.|..... |..+.--|.-.|+.++-.++-+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 4568888888887765 3577888888888888999999888888754 3333344555677666554444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038373 219 QMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMPF 293 (475)
Q Consensus 219 ~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 293 (475)
.-...| -+|.....+-..|+++++.+++.+. |-.|-.. -..-..|.-+.|.++.+++|.
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~----~r~~eA~------~~A~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG----GSLPLAY------AVAKANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHH------HHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC----CChHHHH------HHHHHcCcHHHHHHHHHHhCC
Confidence 333333 2444455566678888888887543 3322211 112225667788888888753
No 228
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.74 E-value=4.9 Score=30.47 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038373 210 GADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVE 289 (475)
Q Consensus 210 ~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~ 289 (475)
.-+..+-++.+-...+.|+.....+.+.||.+..++..|.++++.++.+.|-. ..+|..+++ +-.-+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq---------ElkPtl~ 94 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ---------ELRPTLN 94 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH---------HHhhHHH
Confidence 34566667777777899999999999999999999999999999998765443 456888774 4455555
Q ss_pred hCCC
Q 038373 290 RMPF 293 (475)
Q Consensus 290 ~m~~ 293 (475)
++|+
T Consensus 95 ELGI 98 (109)
T 1v54_E 95 ELGI 98 (109)
T ss_dssp HHTC
T ss_pred HhCC
Confidence 5553
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.71 E-value=5.9 Score=29.39 Aligned_cols=64 Identities=14% Similarity=-0.027 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHHcCC---hHHHHHHHHhcccCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 038373 94 QLESLDVNLLSLCKEGK---VREAIEYMGQDASASAGY-DVFSSLLDSCGNLKSIEMGKRVHELLRTS 157 (475)
Q Consensus 94 ~~~~~n~li~~~~~~g~---~~~A~~l~~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 157 (475)
|...|..+-.++...++ .++|..+|++.....|+. .....+-..+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433332 456666665544433433 23444444555556666666666665554
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=85.03 E-value=4 Score=37.65 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHhcc--cC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC
Q 038373 177 CNTRLARKVFDQLR--KR--NLSSWHLMISGYAAN-GQGADGLMLFEQMRKTGPH 226 (475)
Q Consensus 177 g~~~~A~~~f~~m~--~~--~~~tyn~li~~~~~~-g~~~~A~~l~~~M~~~g~~ 226 (475)
|+.++|++.|++-. .| ++.++......+++. |+.++|.+.+++-......
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 44444444444433 12 244444444444442 4555555555555444433
No 231
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.16 E-value=5.3 Score=38.61 Aligned_cols=128 Identities=11% Similarity=0.046 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHH
Q 038373 127 GYDVFSSLLDSCG---NLKSIEMGKRVHELLRTS--A-FVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLM 200 (475)
Q Consensus 127 ~~~t~~~ll~~~~---~~~~~~~a~~~~~~m~~~--g-~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~l 200 (475)
|...|..++.... ..|+.+.+.+.+.+.... | +-++... ..-++....-++++ =..+...+
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~----------~~w~~~~r~~l~~~---~~~a~~~~ 177 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD----------FQFVEPFATALVED---KVLAHTAK 177 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT----------STTHHHHHHHHHHH---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc----------hhHHHHHHHHHHHH---HHHHHHHH
Confidence 4445666655432 346777777777777653 3 1122110 01111112222222 12345567
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh----hhCCCcCCHHHH
Q 038373 201 ISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK----NDYGIVPGIEHY 268 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~----~~~g~~p~~~~y 268 (475)
+..+...|++++|+..+..+.... .-+...|-.+|.++...|+..+|.+.|+... ++.|+.|...+-
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 788888999999998888887642 3378889999999999999999998887754 357999987643
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=82.74 E-value=7.1 Score=31.54 Aligned_cols=82 Identities=7% Similarity=-0.011 Sum_probs=46.2
Q ss_pred cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038373 108 EGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD 187 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~ 187 (475)
.|+......-+-.+.. +..-++..|+.....|.-++-.+++..+.... +|+....-.+-++|.|-|+..+|.+++.
T Consensus 74 C~NlKrVi~C~~~~n~---~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT---LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CSCTHHHHHHHHHTTC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc---hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4444444444443322 33345555666666666666666666654322 5566666666666777777777766666
Q ss_pred hcccCC
Q 038373 188 QLRKRN 193 (475)
Q Consensus 188 ~m~~~~ 193 (475)
+.-+++
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 655443
No 233
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.62 E-value=12 Score=28.23 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.-++|..|-+.+...|. ...+--+-+..+...|++++|..+.+.+.-||++.|-+|-. .+.|..+++..-+.+|..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 22222222345667788888888888777788888877654 356666666666666666
Q ss_pred cC
Q 038373 223 TG 224 (475)
Q Consensus 223 ~g 224 (475)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 234
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.69 E-value=12 Score=28.27 Aligned_cols=78 Identities=14% Similarity=-0.007 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.-++|..|-+.+...|. ...+--+-+..+...|++++|..+.+.+.-||++.|-+|-. .+.|..+++..-+.+|..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666553 22222222345667788888888888887888888877654 466777777666667766
Q ss_pred cC
Q 038373 223 TG 224 (475)
Q Consensus 223 ~g 224 (475)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 235
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.83 E-value=11 Score=30.25 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038373 211 ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 211 ~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
-+..+-++.+-...+.|+.......+.+|.+..++..|.++|+.++.+.| +...+|..+++ +-.-++++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq---------ElkPtl~E 138 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTLNE 138 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH---------HHhhHHHH
Confidence 34556666666778999999999999999999999999999999996644 34556888774 45556666
Q ss_pred CCC
Q 038373 291 MPF 293 (475)
Q Consensus 291 m~~ 293 (475)
+|+
T Consensus 139 LGI 141 (152)
T 2y69_E 139 LGI 141 (152)
T ss_dssp HTC
T ss_pred hCC
Confidence 654
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.66 E-value=7.7 Score=37.43 Aligned_cols=59 Identities=12% Similarity=-0.040 Sum_probs=42.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
...++.++...|+.+++...+..+.... .-+...|-.||.+|.++|+..+|.+.|+...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666677788888877777776543 4567778888888888888888888887764
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=77.28 E-value=10 Score=30.10 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHhhhCCCcC-C-HHHHHHHHHHHHhcCCHHHHH
Q 038373 211 ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKE---GFLYFEIMKNDYGIVP-G-IEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 211 ~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~~g~~p-~-~~~y~~li~~~~~~g~~~~A~ 285 (475)
..+.+-|.+....|. |+..|--.+-.++.+.....+ +..+++....+ + .| + ....-.|--++.|.|++++|.
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444544444444 444444445556666555444 67777766632 2 12 1 111223344566666666666
Q ss_pred HHHHhC
Q 038373 286 EFVERM 291 (475)
Q Consensus 286 ~~~~~m 291 (475)
+.++.+
T Consensus 95 ~~~~~l 100 (126)
T 1nzn_A 95 KYVRGL 100 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.23 E-value=24 Score=37.22 Aligned_cols=123 Identities=9% Similarity=0.023 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHhcccCCH--H--HHHHHHHHHHhcCC-hHHHHHHHHHHHHc------CCCCCHH----
Q 038373 167 NKLIEMYGKCCN-TRLARKVFDQLRKRNL--S--SWHLMISGYAANGQ-GADGLMLFEQMRKT------GPHPDKE---- 230 (475)
Q Consensus 167 ~~Li~~~~k~g~-~~~A~~~f~~m~~~~~--~--tyn~li~~~~~~g~-~~~A~~l~~~M~~~------g~~pd~~---- 230 (475)
.+|+..+...|+ ++.|..+|+++.+.+. . -..++|..+.+.++ --+|.+++.+..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344444444556 6889999998864332 2 22333433333332 23566666655421 2222211
Q ss_pred -------HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038373 231 -------TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP-GIEHYIAIIKVLGSAGHLIEAEEFVERMP 292 (475)
Q Consensus 231 -------t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 292 (475)
....=.+-|...|+++.|.++-++.. .+.| +..+|-.|...|.+.|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11111234567899999999999887 4566 47899999999999999999999999986
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.75 E-value=12 Score=39.37 Aligned_cols=123 Identities=11% Similarity=0.059 Sum_probs=79.8
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHhc-----------ccCCHH--
Q 038373 131 FSSLLDSCGNLKS-IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN-TRLARKVFDQL-----------RKRNLS-- 195 (475)
Q Consensus 131 ~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~-~~~A~~~f~~m-----------~~~~~~-- 195 (475)
..+|++.+...++ .+.|..+++.+.+..-.-++....++|..+.+.++ --+|.+++.+. ...+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3556666666666 58899999999876422233334455555544442 22344443332 122321
Q ss_pred ---HHH-HHH----HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038373 196 ---SWH-LMI----SGYAANGQGADGLMLFEQMRKTGPHPD-KETFLVVFAACASAEAVKEGFLYFEIM 255 (475)
Q Consensus 196 ---tyn-~li----~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~li~~~~~~g~~~~a~~~~~~m 255 (475)
.+. .|+ .-+...|+++-|+++-++-.. +.|+ -.||-.|..+|.+.|+++.|.-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111 133 225568999999999988776 4675 569999999999999999999999877
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.16 E-value=64 Score=35.86 Aligned_cols=144 Identities=10% Similarity=0.024 Sum_probs=87.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---------------------
Q 038373 134 LLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR--------------------- 192 (475)
Q Consensus 134 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~--------------------- 192 (475)
++..+.+.+..+.+.++.... ..+....=.+-.+|..+|+.++|.+.|.+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555555544433 223333333444667778888888888654210
Q ss_pred ----CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC-H--HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcC
Q 038373 193 ----NL-SSWHLMISGYAANGQGADGLMLFEQMRKTG-PHPD-K--ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVP 263 (475)
Q Consensus 193 ----~~-~tyn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd-~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p 263 (475)
.. .=|..++.-|-+.|.++.++++-+.-.+.. -.++ . ..|..+.+++...|++++|...+-.+... ..+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLK- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSC-
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHH-
Confidence 00 126677778888888888887766555432 1211 1 24778888888889999888888777632 333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 038373 264 GIEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 264 ~~~~y~~li~~~~~~g~~~~A~ 285 (475)
......||..+|..|.+++-.
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhh
Confidence 345677888888777765543
No 241
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.75 E-value=16 Score=27.66 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=25.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 204 YAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 204 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
+...|++++|..+.+.+ +.||.+.|..|-.. +.|.-+++..-+..+.
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 45566666666655544 45666666554433 4455555555554444
No 242
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=73.31 E-value=15 Score=29.23 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRN---LSSWHLMISGYAANGQ--GADGLMLFEQMRKTGPHP 227 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~---~~tyn~li~~~~~~g~--~~~A~~l~~~M~~~g~~p 227 (475)
..+.+|.-|...|++++|.+.++++..|. .+.+.++..++-+.+. .+.+..++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34677888888899999999999887663 3466666677766543 356777888887777543
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=73.13 E-value=32 Score=27.12 Aligned_cols=78 Identities=4% Similarity=-0.084 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHhcccCC-H----HHHHHHHHHHHhcCChHHHHH
Q 038373 144 IEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRL---ARKVFDQLRKRN-L----SSWHLMISGYAANGQGADGLM 215 (475)
Q Consensus 144 ~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~---A~~~f~~m~~~~-~----~tyn~li~~~~~~g~~~~A~~ 215 (475)
+..+.+-|......|. ++..+--.+--++.+....++ +..++++.-+.+ . ...=.|--|+.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444444442 455554455555555554443 555555544322 1 111223345666666666666
Q ss_pred HHHHHHH
Q 038373 216 LFEQMRK 222 (475)
Q Consensus 216 l~~~M~~ 222 (475)
.++.+.+
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666665
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.06 E-value=73 Score=31.13 Aligned_cols=181 Identities=9% Similarity=0.074 Sum_probs=115.7
Q ss_pred CChHHHHHHHHhcc---c---CC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH----HHHc
Q 038373 109 GKVREAIEYMGQDA---S---AS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRT-SAFVKDVELNNKLIEM----YGKC 176 (475)
Q Consensus 109 g~~~~A~~l~~~~~---~---~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~Li~~----~~k~ 176 (475)
|++++|++-+.... + .. -.......++..|.+.++++...+.+..+.+ +|..+.. ...+|.- ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 56777777553211 1 11 3456688899999999999998887776643 4544333 2334433 3223
Q ss_pred CCHH--HHHHHHHhccc----C------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 038373 177 CNTR--LARKVFDQLRK----R------NLSSWHLMISGYAANGQGADGLMLFEQMRKT--GPHPD---KETFLVVFAAC 239 (475)
Q Consensus 177 g~~~--~A~~~f~~m~~----~------~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd---~~t~~~li~~~ 239 (475)
...+ .-..+.+.... + .....-.|...|...|++.+|.+++.++..+ |.... ...|...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22333333221 1 1124456788899999999999999998753 33222 23677788889
Q ss_pred HccCCHHHHHHHHHHHhhhC---CCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 240 ASAEAVKEGFLYFEIMKNDY---GIVPG--IEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 240 ~~~g~~~~a~~~~~~m~~~~---g~~p~--~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
...+++.+|..++..+..+. ...|+ ..-|..++..+...+++.+|.+.|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999988765221 22222 345678888888999999998887766
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=72.43 E-value=27 Score=26.47 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 143 SIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 143 ~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
+.-+.++-++.+....+.|++.+..+.+.++-|.+++..|.++|+.++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444556666666666777777777777788777777888887777766
No 246
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.26 E-value=7.5 Score=34.73 Aligned_cols=202 Identities=9% Similarity=0.008 Sum_probs=104.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHH
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE--LNNKLIEMYGK 175 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~Li~~~~k 175 (475)
++.+...++.|+.+....+++...... .+...-.+.|...+..|+.+. ++.+.+.|..++.. ...+.+...++
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 455667789999988888887654311 101111234455556677654 44555667655432 12244556667
Q ss_pred cCCHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH------------HHHHHHHHH
Q 038373 176 CCNTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET------------FLVVFAACA 240 (475)
Q Consensus 176 ~g~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t------------~~~li~~~~ 240 (475)
.|+.+-+..+++.-.. +|..-++.|.. .+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADVNECDFYGFTAFME-AAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTCCBHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCcccCCHHHH-HHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 8888888877775332 23333444443 34566643 4555556666554320 113344455
Q ss_pred ccCCHHHHHHHHHHHhhhCCCcCCH---HHHHHHHHHHHhcCCH---HHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCC
Q 038373 241 SAEAVKEGFLYFEIMKNDYGIVPGI---EHYIAIIKVLGSAGHL---IEAEEFVERMPFEPTVEV--WEALRNFAQIHGD 312 (475)
Q Consensus 241 ~~g~~~~a~~~~~~m~~~~g~~p~~---~~y~~li~~~~~~g~~---~~A~~~~~~m~~~p~~~t--~~~li~~~~~~g~ 312 (475)
..|..+-...+++ ..|..++. ...+.|.. .+..|.. .+..+++-+-|..++... -.+.+...+..|+
T Consensus 157 ~~~~~~~v~~Ll~----~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 157 EKGHVEVLKILLD----EMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HHTCHHHHHHHHH----TSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHH----hcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 6677765555544 22444432 22334433 3444553 445555555554433221 1233445556787
Q ss_pred ch
Q 038373 313 VE 314 (475)
Q Consensus 313 ~~ 314 (475)
.+
T Consensus 232 ~~ 233 (285)
T 1wdy_A 232 LG 233 (285)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.71 E-value=15 Score=27.65 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=27.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 203 GYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 203 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.+...|++++|..+.+.+ +.||.+.|..|-.. +.|.-+++..-+..+.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 355566666666655544 46666666555433 5555555555555554
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.94 E-value=92 Score=34.62 Aligned_cols=142 Identities=10% Similarity=-0.095 Sum_probs=91.7
Q ss_pred HHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC------------------
Q 038373 100 VNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVK------------------ 161 (475)
Q Consensus 100 ~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p------------------ 161 (475)
.++..+.+.+..+-|.++...... +...--.+-.++...|++++|.+.|.+... |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~---~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS---DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC---CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC---CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence 366677778888888777665443 333322333456677888888888865421 1111
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHh----cccCC--H--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038373 162 -----DVELNNKLIEMYGKCCNTRLARKVFDQ----LRKRN--L--SSWHLMISGYAANGQGADGLMLFEQMRKTGPHPD 228 (475)
Q Consensus 162 -----~~~~~~~Li~~~~k~g~~~~A~~~f~~----m~~~~--~--~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd 228 (475)
-..=|.-++..|-+.|..+.+.++-.. ....+ . ..|..+.+++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 112367788888888888877765442 21112 1 25889999999999999999988888765554
Q ss_pred HHHHHHHHHHHHccCCHHH
Q 038373 229 KETFLVVFAACASAEAVKE 247 (475)
Q Consensus 229 ~~t~~~li~~~~~~g~~~~ 247 (475)
......||..+|..|.++.
T Consensus 971 ~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhCCChhh
Confidence 3456667777776665543
No 249
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.61 E-value=14 Score=30.33 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRN---LSSWHLMISGYAANGQ--GADGLMLFEQMRKTGPHP 227 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~---~~tyn~li~~~~~~g~--~~~A~~l~~~M~~~g~~p 227 (475)
..+.+|.-|...|++++|.+.++++..|. .+.+.++..++-+.+. .+.+..|+..+...|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34667888888888888888888887663 3456666666666432 355677787777766543
No 250
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.98 E-value=61 Score=27.08 Aligned_cols=142 Identities=11% Similarity=-0.009 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+|...-...+.++++.|..+..-.+.+.... +|..+-...+.++++.++.+....+.. +.. .+|..+-...+.+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~a 99 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDERAVEPLIK-ALK---DEDGWVRQSAAVA 99 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHHHHHHHHH-HHc---CCCHHHHHHHHHH
Confidence 5555555556666666653333333333322 565555555666666655433322222 222 3566666666666
Q ss_pred HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 173 YGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
+++.|+.+....+.+.+..+|...=...+.++.+.|.. ++...+.++.. .+|...=...+.++.+.|.
T Consensus 100 L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 100 LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 77666654444455555555555545555555555543 33444444433 2455555555555555554
No 251
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.73 E-value=5.8 Score=35.49 Aligned_cols=208 Identities=10% Similarity=-0.053 Sum_probs=109.7
Q ss_pred HHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcC
Q 038373 101 NLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL--NNKLIEMYGKCC 177 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~Li~~~~k~g 177 (475)
.+...++.|+.+-+..+++...... +|..-.+ .|...+..|+.+ +.+.+.+.|..++... ..+.+...++.|
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 116 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-PFLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYG 116 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhC
Confidence 4555677888877777776643311 2222122 233344556665 4455555666554221 123455667789
Q ss_pred CHHHHHHHHHhcccCCHH-------------HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHH
Q 038373 178 NTRLARKVFDQLRKRNLS-------------SWHLMISGYAANGQGADGLMLFEQMRKT-GPHPDK---ETFLVVFAACA 240 (475)
Q Consensus 178 ~~~~A~~~f~~m~~~~~~-------------tyn~li~~~~~~g~~~~A~~l~~~M~~~-g~~pd~---~t~~~li~~~~ 240 (475)
+.+-+..+++.-..++.. -++ .+...+..|+.+-+. .+.+. |..++. .-.+.+..+ +
T Consensus 117 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~g~t~l~~a-~ 190 (285)
T 1wdy_A 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKGHVEVLK----ILLDEMGADVNACDNMGRNALIHA-L 190 (285)
T ss_dssp CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHHHHTCHHHHH----HHHHTSCCCTTCCCTTSCCHHHHH-H
T ss_pred CHHHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHHHcCCHHHHH----HHHHhcCCCCCccCCCCCCHHHHH-H
Confidence 998888888764433221 122 333445567654443 34443 554432 223334334 3
Q ss_pred ccCCHHHHHHHHHHHhhhCCCcCCHHH--HHHHHHHHHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCchH
Q 038373 241 SAEAVKEGFLYFEIMKNDYGIVPGIEH--YIAIIKVLGSAGHLIEAEEFVERMPFEPT---VEVWEALRNFAQIHGDVEL 315 (475)
Q Consensus 241 ~~g~~~~a~~~~~~m~~~~g~~p~~~~--y~~li~~~~~~g~~~~A~~~~~~m~~~p~---~~t~~~li~~~~~~g~~~~ 315 (475)
..+......++.+.+. +.|..++... ..+.+...++.|+.+-+..+++..|..++ ..-++ -+...++.|+.
T Consensus 191 ~~~~~~~~~~i~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t-~l~~A~~~~~~-- 266 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLL-DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT-ALLLAVELKLK-- 266 (285)
T ss_dssp HCSCTTTHHHHHHHHH-HTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCC-HHHHHHHTTCH--
T ss_pred HccccchHHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCc-HHHHHHHcCcH--
Confidence 4455444455666666 3477665432 23455667788999888888886654333 22223 33444556774
Q ss_pred HHHHHHHHhc
Q 038373 316 EDRAEELLGD 325 (475)
Q Consensus 316 a~~~~~~l~~ 325 (475)
++.+.|.+
T Consensus 267 --~i~~~Ll~ 274 (285)
T 1wdy_A 267 --KIAELLCK 274 (285)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 44455544
No 252
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.05 E-value=7.3 Score=33.97 Aligned_cols=169 Identities=8% Similarity=-0.064 Sum_probs=70.7
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChH
Q 038373 137 SCGNLKSIEMGKRVHELLRTSAFVKDVE--LNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAANGQGA 211 (475)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~ 211 (475)
..+..|+++....+++.+.+.|..++.. ...+.+...++.|+.+-+..+++.-..+ |..-++.|. ..+..|+.+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~ 93 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH-LACEHRSPT 93 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH-HHHHcCCHH
Confidence 3344566666555555555555443321 1123344445556666555555432222 211222222 234455554
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHH---HHHHHHHHHhcCCHHHHH
Q 038373 212 DGLMLFEQMRKTGPHPD---KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEH---YIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 212 ~A~~l~~~M~~~g~~pd---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---y~~li~~~~~~g~~~~A~ 285 (475)
-+..+++.....++.++ ..-.+ .+...+..|..+-...+++ .|..++... ..+.+..-++.|+.+-+.
T Consensus 94 ~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 167 (241)
T 1k1a_A 94 CLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQLLLE-----RGADIDAVDIKSGRSPLIHAVENNSLSMVQ 167 (241)
T ss_dssp HHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHH-----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHHHHH-----cCCCcccccccCCCcHHHHHHHcCCHHHHH
Confidence 44333333221111221 11112 2223334455544333332 244443221 223445556677776665
Q ss_pred HHHHhCCCCCCH---HHHHHHHHHHHHcCCch
Q 038373 286 EFVERMPFEPTV---EVWEALRNFAQIHGDVE 314 (475)
Q Consensus 286 ~~~~~m~~~p~~---~t~~~li~~~~~~g~~~ 314 (475)
.+++. |..++. .-+ +.+...+..|+.+
T Consensus 168 ~Ll~~-g~~~~~~~~~g~-t~L~~A~~~~~~~ 197 (241)
T 1k1a_A 168 LLLQH-GANVNAQMYSGS-SALHSASGRGLLP 197 (241)
T ss_dssp HHHHT-TCCTTCBCTTSC-BHHHHHHHHTCHH
T ss_pred HHHHc-CCCCCCcCCCCC-CHHHHHHHcCCHH
Confidence 55554 333321 222 2344445567753
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=60.53 E-value=54 Score=26.30 Aligned_cols=44 Identities=7% Similarity=0.107 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Q 038373 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLR 190 (475)
Q Consensus 147 a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~ 190 (475)
.++-++.+....+.|++.+..+-+.++-|.+++..|.++|+..+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444455556666666666666666666666666666555
No 254
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=60.12 E-value=70 Score=26.21 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHccCCHHHHHHHHHHHhhh
Q 038373 192 RNLSSWHLMISGYAANGQG------ADGLMLFEQMRKTGPHPDKE----TFLVVFA---ACASAEAVKEGFLYFEIMKND 258 (475)
Q Consensus 192 ~~~~tyn~li~~~~~~g~~------~~A~~l~~~M~~~g~~pd~~----t~~~li~---~~~~~g~~~~a~~~~~~m~~~ 258 (475)
.|-.+|=..+.-.-+.|+. ++..++|++-... +.|+.. .|.-|.- .+-..+++++|.++|+.+.+-
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3666777777777777888 7777777766553 555421 1111100 012237788888888887632
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 259 YGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 259 ~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
+-.- ...|-..-.--.+.|++.+|.+++.+-
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 556666666677788888888888765
No 255
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=57.14 E-value=7.2 Score=33.83 Aligned_cols=196 Identities=10% Similarity=0.034 Sum_probs=97.3
Q ss_pred HHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCC
Q 038373 103 LSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL---NNKLIEMYGKCCN 178 (475)
Q Consensus 103 ~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~Li~~~~k~g~ 178 (475)
...++.|+.+....+++...... +|.. -.+.|...+..|+++.+. .+.+.|..++... ..+.+...++.|+
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYDVRQPDKE-NVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHcCChHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 34578899888888887654311 2222 123455556677776544 4445554333211 2344566667788
Q ss_pred HHHHHHHHHhcccC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHH
Q 038373 179 TRLARKVFDQLRKR---NLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKE---TFLVVFAACASAEAVKEGFLYF 252 (475)
Q Consensus 179 ~~~A~~~f~~m~~~---~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~---t~~~li~~~~~~g~~~~a~~~~ 252 (475)
.+-+..+++.-..+ |...++.|. ..+..|+.+ +++.+.+.|..++.. -.+.+..++.+.+.. +..+++
T Consensus 89 ~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~~~L 162 (240)
T 3eu9_A 89 LSMVVQLMKYGADPSLIDGEGCSCIH-LAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV-DPTRLL 162 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS-TTHHHH
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHH-HHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChH-HHHHHH
Confidence 88777777653322 333333333 334556654 444455566655432 223344444333322 222222
Q ss_pred HHHhhhCCCcCCHHH---HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCCch
Q 038373 253 EIMKNDYGIVPGIEH---YIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVW--EALRNFAQIHGDVE 314 (475)
Q Consensus 253 ~~m~~~~g~~p~~~~---y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~--~~li~~~~~~g~~~ 314 (475)
. +.|..++... ..+.+...++.|+.+-+..+++. |..++.... .+-+....+.|+.+
T Consensus 163 ---~-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~ 224 (240)
T 3eu9_A 163 ---L-TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVW 224 (240)
T ss_dssp ---H-HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred ---H-hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 2 2354444221 22445566778888766666655 333332110 12344455677753
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=56.14 E-value=54 Score=27.21 Aligned_cols=122 Identities=7% Similarity=-0.009 Sum_probs=61.8
Q ss_pred cCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHhcc-----cCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038373 157 SAFVKDVELN--NKLIEMYGKCCNTRLARKVFDQLR-----KRNL-------SSWHLMISGYAANGQGADGLMLFEQMRK 222 (475)
Q Consensus 157 ~g~~p~~~~~--~~Li~~~~k~g~~~~A~~~f~~m~-----~~~~-------~tyn~li~~~~~~g~~~~A~~l~~~M~~ 222 (475)
.|+.|.-..+ -.-+..+...|.++.|+-+.+-+. .+++ .+...+-.++...|++.+|...|++-..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3555543333 233667777888888887776543 2443 1555666778888888888888887543
Q ss_pred -cCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038373 223 -TGPHPDKE-TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERMP 292 (475)
Q Consensus 223 -~g~~pd~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~ 292 (475)
....+... ++.++ ........ ......+...---+-.+|.+.|+.++|..+++.++
T Consensus 92 ~~k~l~k~~s~~~~~----~~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPST----GNSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCccccc----cccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 22222221 11111 00000000 00122233333346678889999999999999884
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.98 E-value=1e+02 Score=29.89 Aligned_cols=94 Identities=12% Similarity=0.001 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHhhhC--CCcCCH----HH
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPD--KETFLVVFAACASAEAVKEGFLYFEIMKNDY--GIVPGI----EH 267 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--g~~p~~----~~ 267 (475)
++..+..-|.+.|+.++|.+.|.++...-..+. ...+-.+|..+...+++..+........... +-.|+. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 344444555555555555555555554322221 2244455555555566666555555443211 112221 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 268 YIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 268 y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
|..++ +...+++.+|...|-+.
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHH
Confidence 33333 23456677776666554
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.94 E-value=1.5e+02 Score=28.39 Aligned_cols=161 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHhcccCCHHHHH
Q 038373 128 YDVFSSLLDSCGNLKSIEMGKRVHELLRTS----AFVKDVELNNKLIEMYGKCCN-----TRLARKVFDQLRKRNLSSWH 198 (475)
Q Consensus 128 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~Li~~~~k~g~-----~~~A~~~f~~m~~~~~~tyn 198 (475)
......|...|.+.|+.++..+++...... +-.-.......||+.+....+ ++-..+.+++-.+.+-.-..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHH
Q 038373 199 -----LMISGYAANGQGADGLMLFEQMRKTGPHPD-----KETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHY 268 (475)
Q Consensus 199 -----~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y 268 (475)
-|+.-|...|++.+|.+++.++.+.=-+.| ...|..-+..|...+++.++...+.....-.+-.+....-
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Q ss_pred HHHHHHHH------hcCCHHHHHHHH
Q 038373 269 IAIIKVLG------SAGHLIEAEEFV 288 (475)
Q Consensus 269 ~~li~~~~------~~g~~~~A~~~~ 288 (475)
.+.|+.++ ..+++.+|...|
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHH
No 259
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=52.63 E-value=16 Score=34.28 Aligned_cols=209 Identities=12% Similarity=0.042 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIE 171 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~ 171 (475)
.|..-++.| ...++.|+.+-+..+++...... .|..-. +.|...+..|+.+-+. .+.+.|..++.....+.+.
T Consensus 16 ~d~~g~t~L-~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~-t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 16 SDDENMEKI-HVAARKGQTDEVRRLIETGVSPTIQNRFGC-TALHLACKFGCVDTAK----YLASVGEVHSLWHGQKPIH 89 (364)
T ss_dssp CCHHHHHHH-HHHHHHTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCHHH
T ss_pred cCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccccCCCCC-cHHHHHHHcCCHHHHH----HHHHCCCCccccCCCCHHH
Confidence 455555554 45577899988888887644311 222222 2344455667775544 4445555554433344556
Q ss_pred HHHHcCCHHHHHHHHHhccc--CCHH----------------------HHHHHHHHHHhcC--ChHHHHHHHHHHHHcCC
Q 038373 172 MYGKCCNTRLARKVFDQLRK--RNLS----------------------SWHLMISGYAANG--QGADGLMLFEQMRKTGP 225 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~~--~~~~----------------------tyn~li~~~~~~g--~~~~A~~l~~~M~~~g~ 225 (475)
.-+..|+.+-+..+++.-.. .++. -++.|.. .+..| +.+ +++.+.+.|.
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~----~v~~Ll~~ga 164 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLE----MIKILVQLGA 164 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHH----HHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHH----HHHHHHHcCC
Confidence 66778999988888886321 1111 2344444 34556 433 3444445566
Q ss_pred CCCHHHH--HHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC---HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC---H
Q 038373 226 HPDKETF--LVVFAACASAEAVKEGFLYFEIMKNDYGIVPG---IEHYIAIIKVLGSAGHLIEAEEFVERMPFEPT---V 297 (475)
Q Consensus 226 ~pd~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~---~ 297 (475)
.++.... .+.+...+..|..+-+..+++.-....++.++ ..-. +.+..-+..|+.+-+.-+++ .|..++ .
T Consensus 165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~-~gad~~~~d~ 242 (364)
T 3ljn_A 165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAMRFVE-MGIDVNMEDN 242 (364)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC-CTTHHHHTTTCHHHHHHHHT-TTCCTTCCCT
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC-cHHHHHHHcCCHHHHHHHHH-cCCCCCCCCC
Confidence 6654321 23344445678887766666543211111122 1222 23344567788765555554 443333 2
Q ss_pred HHHHHHHHHHHHcCCchH
Q 038373 298 EVWEALRNFAQIHGDVEL 315 (475)
Q Consensus 298 ~t~~~li~~~~~~g~~~~ 315 (475)
.-++.| ...+..|+.+.
T Consensus 243 ~g~tpL-~~A~~~g~~~~ 259 (364)
T 3ljn_A 243 EHTVPL-YLSVRAAMVLL 259 (364)
T ss_dssp TSCCHH-HHHHHTCCHHH
T ss_pred CCCCHH-HHHHHhChHHH
Confidence 223333 44455787643
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.41 E-value=1.5e+02 Score=27.67 Aligned_cols=108 Identities=9% Similarity=0.067 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSI----EMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
.|-++..-|.+.+++++|++++-+... .+.+.|+. |.+.-+.+-..+.++++|...-.-|+..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456666777777777777776654321 12233443 3344445556667888888777777777
Q ss_pred HHHcCCHHHH-HHHHHhcc-------c-C--CHHHHHHHHHHHHhcCChHHHHHHH
Q 038373 173 YGKCCNTRLA-RKVFDQLR-------K-R--NLSSWHLMISGYAANGQGADGLMLF 217 (475)
Q Consensus 173 ~~k~g~~~~A-~~~f~~m~-------~-~--~~~tyn~li~~~~~~g~~~~A~~l~ 217 (475)
+.....-+-. .++.+++. + + |...-..+-..|.+.|++.+|..-|
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 7665531111 11222221 0 1 3333444555566666666665554
No 261
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=51.02 E-value=66 Score=26.37 Aligned_cols=31 Identities=23% Similarity=0.075 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHcCCh------HHHHHHHHhcc
Q 038373 92 NAQLESLDVNLLSLCKEGKV------REAIEYMGQDA 122 (475)
Q Consensus 92 ~~~~~~~n~li~~~~~~g~~------~~A~~l~~~~~ 122 (475)
..|.-+|=..|.-+-+.|++ ++.+++|++..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi 46 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI 46 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH
Confidence 45667777777777777888 77777777543
No 262
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=49.44 E-value=35 Score=29.23 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=40.1
Q ss_pred HHHHHHHcCChHHHHHHHHh-cccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Q 038373 101 NLLSLCKEGKVREAIEYMGQ-DASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSA----FVKDVELNNKLIEMYG 174 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~-~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~Li~~~~ 174 (475)
.+...++.|+.+....+++. ..... .|..-++. |...+..|+.+.+..+++.-.... -..|. ...+.+...+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-~g~t~L~~A~ 83 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETA-LHIAALYDNLEAAMVLMEAAPELVFEPMTSELY-EGQTALHIAV 83 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT-TTCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCH-HHHHHHcCCHHHHHHHHHcCchhccccccccCC-CCcCHHHHHH
Confidence 34455677887777777765 22211 22222222 333445566665555554321110 00011 1223344445
Q ss_pred HcCCHHHHHHHHHh
Q 038373 175 KCCNTRLARKVFDQ 188 (475)
Q Consensus 175 k~g~~~~A~~~f~~ 188 (475)
+.|+.+-+..+++.
T Consensus 84 ~~~~~~~v~~Ll~~ 97 (232)
T 2rfa_A 84 INQNVNLVRALLAR 97 (232)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHhC
Confidence 56777666666654
No 263
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.04 E-value=23 Score=30.62 Aligned_cols=174 Identities=10% Similarity=-0.014 Sum_probs=94.3
Q ss_pred HHHHHHHcCChHHHHHHHHhcccCC-----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHH
Q 038373 101 NLLSLCKEGKVREAIEYMGQDASAS-----AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL--NNKLIEMY 173 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~~~-----p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~Li~~~ 173 (475)
.+...++.|+.+.+..+++.....+ .|..-. +.|...+..|+.+ +++.+.+.|..++... ..+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCC-CHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 4556678899888777776321111 222222 2344445567765 4455556776554321 23455666
Q ss_pred HHcCCHHHHHHHHHhccc-------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccC
Q 038373 174 GKCCNTRLARKVFDQLRK-------RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET---FLVVFAACASAE 243 (475)
Q Consensus 174 ~k~g~~~~A~~~f~~m~~-------~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t---~~~li~~~~~~g 243 (475)
++.|+.+-+..+++.... +|..-++.|..+ +..|+. ++++.+.+.|..++... -.+.+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA-VNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHH-HHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 788999998888887541 232333444433 345554 44555566676665432 234445556677
Q ss_pred CHHHHHHHHHHHhhhCCCcCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 038373 244 AVKEGFLYFEIMKNDYGIVPGIEH--YIAIIKVLGSAGHLIEAEEFVE 289 (475)
Q Consensus 244 ~~~~a~~~~~~m~~~~g~~p~~~~--y~~li~~~~~~g~~~~A~~~~~ 289 (475)
..+-+..+++ .|..++... ..+.+..-++.|+.+-+..+++
T Consensus 162 ~~~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 162 SLSMVQLLLQ-----HGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp CHHHHHHHHH-----TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 7765554443 366554321 1234455567777765555544
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.72 E-value=83 Score=30.49 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccC------CHHHHHHHHHHHHhcCChHHHH
Q 038373 143 SIEMGKRVHELLRTSA-FVK-DVELNNKLIEMYGKCCNTRLARKVFDQLRKR------NLSSWHLMISGYAANGQGADGL 214 (475)
Q Consensus 143 ~~~~a~~~~~~m~~~g-~~p-~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~------~~~tyn~li~~~~~~g~~~~A~ 214 (475)
.+++-.+......+.. .+. =..+...|.+.|.++|++++|.+.|.++.+. -+..|-.+|..+...+++..|.
T Consensus 109 ~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 109 KIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 3444445555554432 222 2236778899999999999999999998742 2447888889999999999999
Q ss_pred HHHHHHHH---cCCCCCHHH----HHHHHHHHHccCCHHHHHHHHHHHhhhC
Q 038373 215 MLFEQMRK---TGPHPDKET----FLVVFAACASAEAVKEGFLYFEIMKNDY 259 (475)
Q Consensus 215 ~l~~~M~~---~g~~pd~~t----~~~li~~~~~~g~~~~a~~~~~~m~~~~ 259 (475)
....+... .+-.|+... |..++ +...+++..|...|-+....+
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~--~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIH--CLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHG--GGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHH--HHHhChHHHHHHHHHHHhccC
Confidence 99888754 343343322 22222 345789999998887766443
No 265
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=46.08 E-value=84 Score=22.90 Aligned_cols=64 Identities=9% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHH
Q 038373 147 GKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGL 214 (475)
Q Consensus 147 a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~ 214 (475)
...+++.+.+.|+- +..-+..+-. .....+.|.++++.+..++-..|..++.++...|...-|.
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHH
Confidence 34566777777753 3333333332 3577889999999999999999999999998888655443
No 266
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=45.11 E-value=18 Score=31.12 Aligned_cols=82 Identities=15% Similarity=0.117 Sum_probs=37.7
Q ss_pred HHHHHHHcCChHHHHHHHHhccc--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHc
Q 038373 101 NLLSLCKEGKVREAIEYMGQDAS--ASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE--LNNKLIEMYGKC 176 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~Li~~~~k~ 176 (475)
.+...++.|+.+....++..... ..+|..-++. |...+..|+++.+ +.+.+.|..++.. ...+.+...++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 35566777888877777765322 1122222222 3333445555433 3444455544321 111223334445
Q ss_pred CCHHHHHHHHH
Q 038373 177 CNTRLARKVFD 187 (475)
Q Consensus 177 g~~~~A~~~f~ 187 (475)
|+.+-+..+++
T Consensus 84 ~~~~~v~~Ll~ 94 (231)
T 3aji_A 84 GXDEIVKALLV 94 (231)
T ss_dssp TCHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555444444
No 267
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.46 E-value=62 Score=30.31 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccC
Q 038373 167 NKLIEMYGKCCNTRLARKVFDQLRKR 192 (475)
Q Consensus 167 ~~Li~~~~k~g~~~~A~~~f~~m~~~ 192 (475)
+.++.-|...|++++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34445555555555555555555443
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.43 E-value=1.4e+02 Score=24.94 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 93 AQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 93 ~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
+|...=...+..+++.|..+..-.+.+.... +|..+-...+.++++.++.+....+. .+.+ .+|..+-...+.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~a 104 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKD--EDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAAVA 104 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHHHH
Confidence 4444444455556665553222222332222 55555555555555555433222222 2221 3555555666666
Q ss_pred HHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038373 173 YGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA 244 (475)
Q Consensus 173 ~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~ 244 (475)
+++.|+.+....+.+.+..+|...-...+.++.+.|.. ++...+.++.. .+|...-...+.++.+.+.
T Consensus 105 L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 105 LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 66666544444444444455555444555555555543 23344444432 2444444445555555554
No 269
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=42.84 E-value=31 Score=25.72 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHH
Q 038373 149 RVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLML 216 (475)
Q Consensus 149 ~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l 216 (475)
.++..+.+.|+- +..-...+-. .....+.+.|.++++.++.++...|.+++.++...|+..-|..|
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 356677777743 2222222221 00114788999999999999889999999999877877665443
No 270
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=41.48 E-value=2.2e+02 Score=26.50 Aligned_cols=133 Identities=15% Similarity=0.107 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLM----LFEQMRKTGPHPDKETFLVVFAACA 240 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~----l~~~M~~~g~~pd~~t~~~li~~~~ 240 (475)
+|-++.+=|.+.+++++|.+++-.- ...+.++|+..-|-+ +.+-..+.++++|..+..-|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556777788899999999876432 123555666644444 3455556788888887777777776
Q ss_pred ccCCHH-HHHHHHHHHh---hhCCC--cCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 038373 241 SAEAVK-EGFLYFEIMK---NDYGI--VPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQI 309 (475)
Q Consensus 241 ~~g~~~-~a~~~~~~m~---~~~g~--~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~ 309 (475)
....-+ .=..+.+.+. .+.|- .-|......+-..|.+.|++.+|+.-|- .+-.+....|..|+.-+.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHH
Confidence 554311 1112222221 12232 2245555677788999999999988873 3433333555444443333
No 271
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=41.43 E-value=0.86 Score=45.24 Aligned_cols=126 Identities=7% Similarity=0.003 Sum_probs=81.5
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 038373 81 HSQNTNDPLRGNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFV 160 (475)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 160 (475)
.+....++.....|...|..+|.+..+.|.+++-+..+.-..+..-++..=+.|+-+|++.+++.+-.+++. .
T Consensus 69 ~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~-------~ 141 (624)
T 3lvg_A 69 MVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------G 141 (624)
T ss_dssp SCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTS-------C
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHc-------C
Confidence 344445555566677777888888888888888777765443322333444577888888887655333322 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhccc------------------------CCHHHHHHHHHHHHhcCChHHH
Q 038373 161 KDVELNNKLIEMYGKCCNTRLARKVFDQLRK------------------------RNLSSWHLMISGYAANGQGADG 213 (475)
Q Consensus 161 p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~------------------------~~~~tyn~li~~~~~~g~~~~A 213 (475)
||+.-...+-+-+...|.++.|.-+|..+.. .++.||--+-.+|...+.+.-|
T Consensus 142 ~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 142 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHH
Confidence 5655556666777777888888877776641 2566888887777766655444
No 272
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.38 E-value=76 Score=27.99 Aligned_cols=100 Identities=7% Similarity=-0.106 Sum_probs=52.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHH--cCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHH
Q 038373 201 ISGYAANGQGADGLMLFEQMRK--TGPHP----DKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKV 274 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~--~g~~p----d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~ 274 (475)
+..+....++++|.+++++.++ .++++ +.......|..-.....-.-+..+.+++. . .++...-...+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h---cCCHHHHHHHHHH
Confidence 4556666677777777666543 23332 11122223333333333333444444453 2 3344455667788
Q ss_pred HHhcCCHHHHHHHHHhC------------CCCCCHHHHHHHH
Q 038373 275 LGSAGHLIEAEEFVERM------------PFEPTVEVWEALR 304 (475)
Q Consensus 275 ~~~~g~~~~A~~~~~~m------------~~~p~~~t~~~li 304 (475)
+.+-|+-++|.++|-+. +..-|...|..=+
T Consensus 101 L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~L 142 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQL 142 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 88888888888887543 3445666665533
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.96 E-value=67 Score=30.38 Aligned_cols=67 Identities=7% Similarity=0.109 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHHhhhCCCcCC
Q 038373 196 SWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEA--VKEGFLYFEIMKNDYGIVPG 264 (475)
Q Consensus 196 tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~~g~~p~ 264 (475)
..+.+|.=|...|+.+||.+.++++..-.+. -.+.+..+..++-+.++ .+...+++..+... |+-+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~-glls~ 287 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITI 287 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCCCH
Confidence 4566777777777777777777777432111 13445555556655432 34566667666643 54433
No 274
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=40.53 E-value=65 Score=29.74 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 038373 166 NNKLIEMYGKCCNTRLARKVFDQLRKRN---LSSWHLMISGYAANGQ--GADGLMLFEQMRKTGPH 226 (475)
Q Consensus 166 ~~~Li~~~~k~g~~~~A~~~f~~m~~~~---~~tyn~li~~~~~~g~--~~~A~~l~~~M~~~g~~ 226 (475)
.+.+|.-|...|++++|.+.++++..|. .+.+.++..++-+.++ .+....|+..+...|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 4566777777777777777777776552 2355555555555433 24455677777666554
No 275
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=39.20 E-value=31 Score=28.72 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=43.8
Q ss_pred HHHHHHcCChHHHHHHHHhcc-cC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcC
Q 038373 102 LLSLCKEGKVREAIEYMGQDA-SA-SAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL--NNKLIEMYGKCC 177 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~-~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~Li~~~~k~g 177 (475)
+...+..|+.+....++.+.. .. ..|..-++. |...+..|+.+. .+.+.+.|..++... ..+.+...++.|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIEI----AKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 334567888888888887543 11 122222223 333445566554 444455565554321 123344555677
Q ss_pred CHHHHHHHHHh
Q 038373 178 NTRLARKVFDQ 188 (475)
Q Consensus 178 ~~~~A~~~f~~ 188 (475)
+.+-+..+++.
T Consensus 84 ~~~~~~~Ll~~ 94 (201)
T 3hra_A 84 RTEILAYMLKH 94 (201)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 77777777754
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=38.93 E-value=2.3e+02 Score=26.02 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMG----KRVHELLRTSAFVKDVELNNKLIEM 172 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a----~~~~~~m~~~g~~p~~~~~~~Li~~ 172 (475)
.|-++..-|.+.+++++|++++.+... .+.+.|+...| .-+.+-..+.++++|...-.-|+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344555555555555555555443211 12334554443 3445555667888887777777777
Q ss_pred HHHcCCHH-HHHHHHHhcc-------c---CCHHHHHHHHHHHHhcCChHHHHHHH
Q 038373 173 YGKCCNTR-LARKVFDQLR-------K---RNLSSWHLMISGYAANGQGADGLMLF 217 (475)
Q Consensus 173 ~~k~g~~~-~A~~~f~~m~-------~---~~~~tyn~li~~~~~~g~~~~A~~l~ 217 (475)
+.....-+ .=.++.+++. . -|......+-..|.+.|++.+|..-|
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 66543211 0111222221 1 14445556666666667666666544
No 277
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=38.63 E-value=0.04 Score=54.45 Aligned_cols=210 Identities=11% Similarity=0.090 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 038373 97 SLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKC 176 (475)
Q Consensus 97 ~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~ 176 (475)
.|.-|-.+..+.|++.+|.+-|-+.. |+..|..+|.++.+.|.+++-...+...++. ..+..+=+.||-+|+|.
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKT 129 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTS
T ss_pred HHHHHHHHHHccCchHHHHHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhh
Confidence 47778888888899988887765443 4456889999999999999988888777665 34556678999999999
Q ss_pred CCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------------------CCCCHHHHHHHH
Q 038373 177 CNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLMLFEQMRKTG--------------------PHPDKETFLVVF 236 (475)
Q Consensus 177 g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g--------------------~~pd~~t~~~li 236 (475)
+++.+-++++ ..||+.--..+-.-|...|.++.|.-+|..+-.-. -.-++.||--+-
T Consensus 130 ~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 130 NRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp CSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred CcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 9977654433 23555555556666777777777766665532211 123566888888
Q ss_pred HHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCch
Q 038373 237 AACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PF-EPTVEVWEALRNFAQIHGDVE 314 (475)
Q Consensus 237 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~t~~~li~~~~~~g~~~ 314 (475)
.+|...+.+.-|.-.--.+.-. || .-..||.-|-+.|.+++-..+++.- |. +...-.|+-|--.|+|..-
T Consensus 207 ~ACvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~P-- 278 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-- 278 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSCT--
T ss_pred HHHhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCH--
Confidence 8999888887665543333311 11 1134566678888888877777654 43 3566677777777776643
Q ss_pred HHHHHHHHHhc
Q 038373 315 LEDRAEELLGD 325 (475)
Q Consensus 315 ~a~~~~~~l~~ 325 (475)
++..+.+.-
T Consensus 279 --eKlmEHlkl 287 (624)
T 3lvg_A 279 --QKMREHLEL 287 (624)
T ss_dssp --THHHHHHTT
T ss_pred --HHHHHHHHH
Confidence 445555443
No 278
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.62 E-value=2.8e+02 Score=26.82 Aligned_cols=175 Identities=11% Similarity=0.079 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC-CH--HHHHHHHHHH----HhcCC
Q 038373 142 KSIEMGKRVHELLRTS-----AFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR-NL--SSWHLMISGY----AANGQ 209 (475)
Q Consensus 142 ~~~~~a~~~~~~m~~~-----g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~-~~--~tyn~li~~~----~~~g~ 209 (475)
++++.|.+.+-.+.+. ...........++..|.+.|+++...+.+..+.++ +. ..-..||.-+ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 5677777777666542 34556788889999999999999987777655432 11 1222333322 22333
Q ss_pred hHHHHH--HHHHHH--HcC-CCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHhhh-CCCcCC---HHHHHHHHHHHHh
Q 038373 210 GADGLM--LFEQMR--KTG-PHP---DKETFLVVFAACASAEAVKEGFLYFEIMKND-YGIVPG---IEHYIAIIKVLGS 277 (475)
Q Consensus 210 ~~~A~~--l~~~M~--~~g-~~p---d~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-~g~~p~---~~~y~~li~~~~~ 277 (475)
.+.... +..... ..| +-- .......|...+-..|++.+|..++..+..+ +|.... +..|..-+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332211 111110 011 111 1122345677888999999999999887643 233222 4567888899999
Q ss_pred cCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCchHH
Q 038373 278 AGHLIEAEEFVERM-------PFEPT--VEVWEALRNFAQIHGDVELE 316 (475)
Q Consensus 278 ~g~~~~A~~~~~~m-------~~~p~--~~t~~~li~~~~~~g~~~~a 316 (475)
.+++.+|..++.+. ...|+ ..-|..++..+...+++..|
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999998876 11222 13344455556666777443
No 279
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.39 E-value=47 Score=29.84 Aligned_cols=76 Identities=8% Similarity=0.022 Sum_probs=32.6
Q ss_pred cCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 038373 108 EGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFD 187 (475)
Q Consensus 108 ~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~ 187 (475)
..+..+..+++........|..-++. |...+..|+++.+..++ +.|..++..-..+.+...++.|+.+-+..+++
T Consensus 9 ~~~~~~v~~lL~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 9 TWKSKQLKSFLSSKDTFKADVHGHSA-SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp GCCHHHHHHHHHSTTTTCCCTTSCCH-HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH
T ss_pred hcCHHHHHHHHHhCCCCccCCCCCCH-HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34455666665543211133322333 33334455554443333 33433332222334444555566555555554
Q ss_pred h
Q 038373 188 Q 188 (475)
Q Consensus 188 ~ 188 (475)
.
T Consensus 84 ~ 84 (285)
T 3kea_A 84 S 84 (285)
T ss_dssp T
T ss_pred C
Confidence 3
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.18 E-value=64 Score=25.40 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHhcccCCHHHHHHHHHHH
Q 038373 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN--TRLARKVFDQLRKRNLSSWHLMISGY 204 (475)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~--~~~A~~~f~~m~~~~~~tyn~li~~~ 204 (475)
..+|.=|...|+.++|.+.++++..-.+ -..+++.++..++=+.++ .+.+.+++..+.+.+++|=+.+..|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf 84 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 84 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence 3444444444555555555554431111 122333334444443321 23444444444444444444444443
No 281
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=35.47 E-value=3e+02 Score=26.26 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=22.0
Q ss_pred HHhccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 137 SCGNLK--SIEMGKRVHELLRTSAFVKDVELNNKLIEMYG 174 (475)
Q Consensus 137 ~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~ 174 (475)
++++.| .++.+..+...+.. +.+...+.+++..+.
T Consensus 117 ~La~ag~~~~~~~l~l~~yL~~---E~~y~~w~~~~~~l~ 153 (419)
T 3rjo_A 117 QLVSIGKLSIEKALDLSLYLKH---ETEIMPVFQGLNELI 153 (419)
T ss_dssp HHHHHTSSCHHHHHHHHGGGGG---CCSHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHhcc---cchHHHHHHHHHHHH
Confidence 344555 45667777666543 677778877776654
No 282
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=35.41 E-value=90 Score=29.57 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 038373 270 AIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m 291 (475)
.++..+.+....+....+|.+.
T Consensus 143 ~vl~~~~k~~G~~~l~~l~~~s 164 (364)
T 3l6a_A 143 LCLQQLAKLQDREWLTELFQQS 164 (364)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHc
Confidence 3445555555555555555444
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=35.30 E-value=1.3e+02 Score=27.14 Aligned_cols=67 Identities=12% Similarity=-0.099 Sum_probs=39.2
Q ss_pred HHHHcCCHHHHHHHHHhcc--cC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 038373 172 MYGKCCNTRLARKVFDQLR--KR-NLSSWHLMISGYAANGQGADGLMLFEQMRKTG--PHPDKETFLVVFAA 238 (475)
Q Consensus 172 ~~~k~g~~~~A~~~f~~m~--~~-~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g--~~pd~~t~~~li~~ 238 (475)
...+.|++++|......-. +| |...=..|+.-+|-.|++++|..-++-..+.. ..|-..+|-.+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 3445667777766654333 23 55566667777777777777777666655521 22334456556555
No 284
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=33.72 E-value=80 Score=25.19 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=36.3
Q ss_pred HHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCC
Q 038373 102 LLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL--NNKLIEMYGKCCN 178 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~Li~~~~k~g~ 178 (475)
+...++.|+.+....+++...... .|..-++. |...+..|+++.+ +.+.+.|..++... ..+.+...+..|+
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTP-LMWAAAHGQIAVV----EFLLQNGADPQLLGKGRESALSLACSKGY 81 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCH-HHHHHHCCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 344567777777777776543211 22222222 3333444555433 33444454443211 1123333444555
Q ss_pred HHHHHHHHH
Q 038373 179 TRLARKVFD 187 (475)
Q Consensus 179 ~~~A~~~f~ 187 (475)
.+-+..+++
T Consensus 82 ~~~v~~Ll~ 90 (167)
T 3v31_A 82 TDIVKMLLD 90 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
No 285
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=33.63 E-value=84 Score=28.39 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=75.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCC----HHHHHHHHHHHH
Q 038373 201 ISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPG----IEHYIAIIKVLG 276 (475)
Q Consensus 201 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~y~~li~~~~ 276 (475)
+....+.|.+++|++...+-++.. .-|.-.=..++.-+|-.|++++|.+-++...+ +.|+ ..+|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a-- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA-- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH--
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH--
Confidence 345678899999999888877763 23666677899999999999999988877762 3444 3455555532
Q ss_pred hcCCHHHH-HHHHHhC---C-CCCCHHHHHHHHHHHH--HcCCchHHHHHHHHHhccCCC
Q 038373 277 SAGHLIEA-EEFVERM---P-FEPTVEVWEALRNFAQ--IHGDVELEDRAEELLGDLDPS 329 (475)
Q Consensus 277 ~~g~~~~A-~~~~~~m---~-~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~l~~~~~~ 329 (475)
|.+ .++|..= + +.....-...|+.+.. ..|+.+.|.+..+...+.-|.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 111 1233322 1 1122233444555543 469999888888877666543
No 286
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=33.42 E-value=1.8e+02 Score=23.06 Aligned_cols=70 Identities=9% Similarity=-0.001 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373 226 HPDKETFLVVFAACASAE---AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT 296 (475)
Q Consensus 226 ~pd~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 296 (475)
.|+..|-=....++.+.. ++.+|..+++.+.+. +-.-.....--|--++.|.|++++|.+..+.+ .++|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344433333333444443 344566677666633 31111223334445677777777777776666 44554
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.90 E-value=2.3e+02 Score=24.19 Aligned_cols=54 Identities=4% Similarity=-0.020 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHH
Q 038373 142 KSIEMGKRVHELLRTSAFVK-DVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLS 195 (475)
Q Consensus 142 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~ 195 (475)
+.......+|..|...|+.- -...|-+.-..+-..|++.+|.+||+.=.+.+..
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44678889999998887643 4566777778888888999998888765544433
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.81 E-value=1.9e+02 Score=25.40 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHhccc----CCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDAS----ASA----GYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLI 170 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~----~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li 170 (475)
---|+.+....++++|++++++... ..+ +.......|+.-...+.-..+..+.+++.. .++...-...+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 3456778888899999888765322 111 111222233333333333344444444422 33444455555
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 038373 171 EMYGKCCNTRLARKVFDQ 188 (475)
Q Consensus 171 ~~~~k~g~~~~A~~~f~~ 188 (475)
..+.|-|+-++|..+|=+
T Consensus 99 ~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHH
Confidence 666666666666666543
No 289
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=31.26 E-value=74 Score=25.32 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 038373 211 ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMK 256 (475)
Q Consensus 211 ~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~ 256 (475)
.+++.++.+..+.+-.-.....-.|--|+.+.|++++|.+..+.+.
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555555544311112222333345555666666666555555
No 290
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=31.14 E-value=18 Score=30.96 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=12.1
Q ss_pred HHHHHHcCChHHHHHHHHhc
Q 038373 102 LLSLCKEGKVREAIEYMGQD 121 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~ 121 (475)
+...++.|+.+....+++..
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 34456667776666666553
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=31.07 E-value=57 Score=29.30 Aligned_cols=81 Identities=12% Similarity=0.019 Sum_probs=45.7
Q ss_pred HHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCH
Q 038373 102 LLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVEL--NNKLIEMYGKCCNT 179 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~Li~~~~k~g~~ 179 (475)
+...++.|+.+-+..+++.... ++...-.+.|...+..|+.+-+. .+.+.|..++... ..+.+...++.|+.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~--~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~ 108 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGAL--KNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDSGNM 108 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGG--GSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 4456778998888888876443 11111123455556778876544 4445676554221 12334455566777
Q ss_pred HHHHHHHHh
Q 038373 180 RLARKVFDQ 188 (475)
Q Consensus 180 ~~A~~~f~~ 188 (475)
+-+..+++.
T Consensus 109 ~~v~~Ll~~ 117 (285)
T 3kea_A 109 QTVKLFVKK 117 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 766666664
No 292
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=30.37 E-value=2.3e+02 Score=23.38 Aligned_cols=57 Identities=7% Similarity=-0.080 Sum_probs=39.9
Q ss_pred HHHHHHHHcCChHHHHHHHHh---cccCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 038373 100 VNLLSLCKEGKVREAIEYMGQ---DASASAGY-------DVFSSLLDSCGNLKSIEMGKRVHELLRT 156 (475)
Q Consensus 100 ~li~~~~~~g~~~~A~~l~~~---~~~~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 156 (475)
.-+..+...|.++.|.-+.+. +....|+. .++..+-+++...+++..|...|++.++
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 346678889999998877553 22222442 2456667788889999999999998643
No 293
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=30.30 E-value=91 Score=25.13 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 038373 245 VKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM-PFEPT 296 (475)
Q Consensus 245 ~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 296 (475)
+.++..+++.+... +-.-.....--|--++.|.|++++|+++.+.+ .++|+
T Consensus 58 i~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 58 ERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp HHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 34555566655532 11111112223344566666666666666665 44454
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.14 E-value=53 Score=26.80 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=29.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHhcccCCHHHHHHHHHHH
Q 038373 132 SSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCN--TRLARKVFDQLRKRNLSSWHLMISGY 204 (475)
Q Consensus 132 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~--~~~A~~~f~~m~~~~~~tyn~li~~~ 204 (475)
+.+|.=|...|++++|.+.++++..-. -...+++.++..++=+.++ .+.+..++..+.+.+++|=+.+..|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf 86 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 86 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence 344444444455555555544443111 1122333333334433221 23344444444444444444444443
No 295
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.95 E-value=2.4e+02 Score=23.38 Aligned_cols=142 Identities=10% Similarity=-0.015 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYA 205 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~ 205 (475)
+|..+-...+.++++.+..+....+. .+.+ .+|..+-...+.++++.|..+....+.+.+..+|...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 67777666777777777643333333 3333 4677777777888888887655556666667777776667777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCC
Q 038373 206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGH 280 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~ 280 (475)
+.|..+ +...+.++.. .||...-...+.++.+.|.-+ +...+..+.+ .+|..+-...+.++++.|.
T Consensus 107 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 107 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS
T ss_pred HhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc
Confidence 777643 4455555543 466666666677777766533 3333433332 2444455566666666655
No 296
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=29.78 E-value=65 Score=26.88 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=36.4
Q ss_pred HHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 038373 104 SLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDV 163 (475)
Q Consensus 104 ~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 163 (475)
..++.|++++...++...... .+...=.+.|...+..++.+.-.++.+.+++.|..++.
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYED-KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 456788888887777654321 11011124455556667777667778888888876654
No 297
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=29.46 E-value=3.4e+02 Score=24.96 Aligned_cols=133 Identities=12% Similarity=-0.021 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHH
Q 038373 165 LNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYAANGQGADGLML----FEQMRKTGPHPDKETFLVVFAACA 240 (475)
Q Consensus 165 ~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~~~g~~~~A~~l----~~~M~~~g~~pd~~t~~~li~~~~ 240 (475)
+|-++..=|.+.+++++|.+++..- ...+.++|+..-|-+| .+-..+.++++|.....-|+..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5666777888889999998875432 1235566776555443 455556788888888777777765
Q ss_pred ccCCH-----HHHHHHHHHHhhhCCC--cCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 038373 241 SAEAV-----KEGFLYFEIMKNDYGI--VPGIEHYIAIIKVLGSAGHLIEAEEFVERMPFEPTVEVWEALRNFAQIH 310 (475)
Q Consensus 241 ~~g~~-----~~a~~~~~~m~~~~g~--~p~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~t~~~li~~~~~~ 310 (475)
....- .-..+....-. +.|- .-|......+-..|.+.|++.+|+.-|- .+-.-|...+..|+--+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~-~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSI-KFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHH-HTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHh-hcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHh
Confidence 53311 11222222322 2222 1255667788888999999999999775 33111344555554444333
No 298
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.14 E-value=70 Score=27.25 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=30.4
Q ss_pred HHHHHHcCChHHHHHHHHhcccC------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 038373 102 LLSLCKEGKVREAIEYMGQDASA------SAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDV 163 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 163 (475)
+...++.|+.+-+..+++..... ..|..-.+. |...+..|+.+. .+.+.+.|..++.
T Consensus 41 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~ 103 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA-LHIAVINQNVNL----VRALLARGASVSA 103 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH-HHHHHHTTCHHH----HHHHHHTTCCTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH-HHHHHHcCCHHH----HHHHHhCCCCCCc
Confidence 44556788888877777754321 011122233 333455677654 4455556665544
No 299
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=29.00 E-value=3.4e+02 Score=24.91 Aligned_cols=167 Identities=10% Similarity=0.040 Sum_probs=85.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhcccCCHH---------HHH
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC--NTRLARKVFDQLRKRNLS---------SWH 198 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g--~~~~A~~~f~~m~~~~~~---------tyn 198 (475)
.|-.+|-++........|..+++.|... ..|. ..||..+|... ++....+.|..+-.+++. .|-
T Consensus 77 ~f~~ll~~l~~~~~~~dA~~l~~A~kg~--Gtde---~~lieIL~tRs~~ql~~i~~~Y~~~~g~~Le~dI~~e~sG~~~ 151 (321)
T 1n00_A 77 DFERLVLLWALDPAERDALLANEATKRW--TSSN---QVLMEIACTRSANQLLHARQAYHARYKKSLEEDVAHHTTGDFH 151 (321)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSSS--CSSC---HHHHHHHHSSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHH
T ss_pred hHHHHHHHHcCChhHHHHHHHHHHhhcc--CCCH---HHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCcHHH
Confidence 3666666666655567788888888543 4553 45666666543 355555666655444332 355
Q ss_pred HHHHHHHhcCCh-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhh---CCCcC-
Q 038373 199 LMISGYAANGQG-----------ADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKND---YGIVP- 263 (475)
Q Consensus 199 ~li~~~~~~g~~-----------~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p- 263 (475)
-++-+.++..+. ..|..|++.|...+ ..|.. ++.++.. ...-++....+.|+.+-.+ ..+.-
T Consensus 152 ~~L~~lv~~~r~~~~~vd~~~~~~dA~~L~~A~~g~~-gtde~-lirIl~~-Rs~~~L~~I~~~Y~~~yg~~L~~~I~~e 228 (321)
T 1n00_A 152 KLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKISNKA-YSDDD-VIRVLAT-RSKAQINATLNHYKNEYGNDINKDLKAD 228 (321)
T ss_dssp HHHHHHHHCCCCCSCCCCHHHHHHHHHHHHHHHHTTC-TTCHH-HHHHHHH-SCHHHHHHHHHHHHHHHSSCTTGGGCSS
T ss_pred HHHHHHHhcccCCCcCCChhhhHHHHHHHHHHhhCcC-CCcHH-HHHHHHh-CCHHHHHHHHHHHHHHhCccHHHHHhhh
Confidence 555556655433 37888888887643 23555 6655533 1122233333444333210 01221
Q ss_pred -CHHHHHHHHHH--HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038373 264 -GIEHYIAIIKV--LGSAGHLIEAEEFVERM-PFEPTVEVWEALR 304 (475)
Q Consensus 264 -~~~~y~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~t~~~li 304 (475)
.-..-.+|+.. +.+.-..--|..+.+.| |.-.|..+...+|
T Consensus 229 ~sGd~~~~Ll~iv~~~~~~~~~~A~~L~~am~g~Gtd~~~Lirii 273 (321)
T 1n00_A 229 PKDEFLALLRSTVKCLVYPEKYFEKVLRLAINRRGTDEGALTRVV 273 (321)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTCCSCTTHHHHHH
T ss_pred cCchHHHHHHHHHHHhcCchHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 11112233322 22222234578888888 5545555544444
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.24 E-value=46 Score=27.61 Aligned_cols=122 Identities=7% Similarity=-0.021 Sum_probs=62.8
Q ss_pred HHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC
Q 038373 102 LLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE--LNNKLIEMYGKCCN 178 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~Li~~~~k~g~ 178 (475)
+...++.|+.+-+..+++...... .|....+. +...+..|+.+.+..+++. .|..++.. ...+.+...++.|+
T Consensus 43 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~ 118 (201)
T 3hra_A 43 LNIAVHNNDIEIAKALIDRGADINLQNSISDSP-YLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGH 118 (201)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhc---cCcccccccCCCCcHHHHHHHcCC
Confidence 445567888877777777644311 22222223 3344556777666555533 33222211 11233455667788
Q ss_pred HHHHHHHHHhc-cc---CCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCC
Q 038373 179 TRLARKVFDQL-RK---RNLSSWHLMISGYAANGQ-GADGLMLFEQMRKTGPHPD 228 (475)
Q Consensus 179 ~~~A~~~f~~m-~~---~~~~tyn~li~~~~~~g~-~~~A~~l~~~M~~~g~~pd 228 (475)
.+-+..+++.- .. +|..-++.|..+.. .|+ ...-.++++.+.+.|..|+
T Consensus 119 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVG-LREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH-SSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH-hccchhhHHHHHHHHHHCCCCCC
Confidence 88877777764 22 23333444444433 333 3333556666666666654
No 301
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.09 E-value=41 Score=26.60 Aligned_cols=150 Identities=7% Similarity=-0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHhc
Q 038373 131 FSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKR---NLSSWHLMISGYAAN 207 (475)
Q Consensus 131 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~---~~~tyn~li~~~~~~ 207 (475)
..+.|...++.|+++.+..+++. ....+..-.....+.+.. +..|+.+-+..+++.-..+ |..-++.|..+....
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Q ss_pred CChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 038373 208 GQGADGLMLFEQMRKTGPHPDKE--TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAE 285 (475)
Q Consensus 208 g~~~~A~~l~~~M~~~g~~pd~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~ 285 (475)
. .++++.+.+.|..++.. .-.+.+...+..|..+-+..+++. . .+........+-+..-++.|+.+-+.
T Consensus 80 ~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~---~~~~~~~~g~t~l~~A~~~~~~~~v~ 150 (156)
T 1bd8_A 80 F-----LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-S---DLHRRDARGLTPLELALQRGAQDLVD 150 (156)
T ss_dssp C-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-S---CTTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred c-----HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-c---CCCCcCCCCCCHHHHHHHcCcHHHHH
Q ss_pred HHHHhC
Q 038373 286 EFVERM 291 (475)
Q Consensus 286 ~~~~~m 291 (475)
-+++.|
T Consensus 151 ~Ll~~~ 156 (156)
T 1bd8_A 151 ILQGHM 156 (156)
T ss_dssp HHHTTC
T ss_pred HHHhhC
No 302
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=27.59 E-value=19 Score=21.88 Aligned_cols=10 Identities=50% Similarity=1.298 Sum_probs=7.5
Q ss_pred cCCcCCCCCC
Q 038373 465 RDGKCSCGDY 474 (475)
Q Consensus 465 ~~g~cs~~~~ 474 (475)
.+|.|+||-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 4677888876
No 303
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.53 E-value=17 Score=32.12 Aligned_cols=28 Identities=21% Similarity=-0.082 Sum_probs=16.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038373 135 LDSCGNLKSIEMGKRVHELLRTSAFVKD 162 (475)
Q Consensus 135 l~~~~~~~~~~~a~~~~~~m~~~g~~p~ 162 (475)
|...++.|+.+....+++.+.+.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 3444556677666666666666665443
No 304
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=24.03 E-value=75 Score=27.86 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=10.4
Q ss_pred HHHHHHcCChHHHHHHHHh
Q 038373 102 LLSLCKEGKVREAIEYMGQ 120 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~ 120 (475)
+...++.|+.+-+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~ 25 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLISQ 25 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHC
Confidence 3344556666655555554
No 305
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=23.92 E-value=2.8e+02 Score=22.23 Aligned_cols=62 Identities=8% Similarity=-0.086 Sum_probs=36.4
Q ss_pred HHHHHHhcCCH---HHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCCchHHHHHHHHHhccCCCChh
Q 038373 271 IIKVLGSAGHL---IEAEEFVERM-PFEP-TVEVWEA-LRNFAQIHGDVELEDRAEELLGDLDPSKAI 332 (475)
Q Consensus 271 li~~~~~~g~~---~~A~~~~~~m-~~~p-~~~t~~~-li~~~~~~g~~~~a~~~~~~l~~~~~~~~~ 332 (475)
+--++.+.... .++..++++. ...| +..-|-- |--|+.+.|+.+.|.+..+.+.+++|++..
T Consensus 45 YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 45 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 33445555543 3555566655 1122 2332322 334777788888888888888888888753
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.90 E-value=53 Score=27.96 Aligned_cols=178 Identities=10% Similarity=-0.006 Sum_probs=93.6
Q ss_pred HHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Q 038373 101 NLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE--LNNKLIEMYGKCC 177 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~Li~~~~k~g 177 (475)
.+...++.|+.+-+..+++...... .+...-.+.|...+..|+.+-+ +.+.+.|..++.. ...+.+...++.|
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 120 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV----VQLMKYGADPSLIDGEGCSCIHLAAQFG 120 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence 4556678888887777777644311 1111011234444556776544 4455566655432 1224456667789
Q ss_pred CHHHHHHHHHhccc---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHccCCHHHHHHH
Q 038373 178 NTRLARKVFDQLRK---RNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET---FLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 178 ~~~~A~~~f~~m~~---~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t---~~~li~~~~~~g~~~~a~~~ 251 (475)
+.+-+..+++.-.. +|..-++.+..+... |...+..++ +.+.|..++... -.+.+...+..|..+-+..+
T Consensus 121 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 196 (240)
T 3eu9_A 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196 (240)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHH
Confidence 98888777775332 233344555555444 333333333 344555544322 12345555677777655544
Q ss_pred HHHHhhhCCCcCCHHHH--HHHHHHHHhcCCHHHHHHHHHhC
Q 038373 252 FEIMKNDYGIVPGIEHY--IAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 252 ~~~m~~~~g~~p~~~~y--~~li~~~~~~g~~~~A~~~~~~m 291 (475)
++ .|..++.... .+-++.-++.|+.+-+..+++..
T Consensus 197 l~-----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 197 LE-----AGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HH-----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred HH-----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 43 2555543211 23455567778877776666654
No 307
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=23.89 E-value=4.2e+02 Score=24.21 Aligned_cols=104 Identities=10% Similarity=0.117 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCH-----HHHHHH
Q 038373 197 WHLMISGYAANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGI-----EHYIAI 271 (475)
Q Consensus 197 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~y~~l 271 (475)
|--++-+++..-...+|..+.+-|.. ...|..++.-++.. .....+....+.|..+-.+ .+.-|+ -.|..+
T Consensus 74 f~~ll~~l~~~~~~~dA~~L~~A~kg--~Gtde~~lieIL~t-Rs~~ql~~i~~~Y~~~yg~-~Le~dI~~e~sG~~~~~ 149 (315)
T 1dm5_A 74 YEAAALALLRKPDEFLAEQLHAAMKG--LGTDKNALIDILCT-QSNAQIHAIKAAFKLLYKE-DLEKEIISETSGNFQRL 149 (315)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHS--SSCCHHHHHHHHSS-CCHHHHHHHHHHHHHHHSS-CHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHccChhHHHHHHHHHHhhc--CCCchhhhhhhHhc-CCHHHHHHHHHHHHHHhCc-cHHHHHHhccCchHHHH
Confidence 44455555554444678888888854 44576655554422 1112233334444433311 221111 125556
Q ss_pred HHHHHhcCCH-----------HHHHHHHHhC-C-CCCCHHHHHHHH
Q 038373 272 IKVLGSAGHL-----------IEAEEFVERM-P-FEPTVEVWEALR 304 (475)
Q Consensus 272 i~~~~~~g~~-----------~~A~~~~~~m-~-~~p~~~t~~~li 304 (475)
+-++.++.+- .+|..+++.| + .-.|..++..++
T Consensus 150 L~~lv~~~r~~~~~vd~~~a~~dA~~L~~A~~~~~GTde~~lirIl 195 (315)
T 1dm5_A 150 LVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEGQIGTDESRFNAVL 195 (315)
T ss_dssp HHHHHTTCCCTTCCCCHHHHHHHHHHHHHHTTTSSSCCHHHHHHHH
T ss_pred HHHHHccccCCCCCCCHHHHHHHHHHHHHHhhCcCCCcHHHHHHHH
Confidence 6666666542 4688999988 3 346776666655
No 308
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.49 E-value=1.1e+02 Score=23.78 Aligned_cols=42 Identities=7% Similarity=-0.160 Sum_probs=31.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 038373 216 LFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKN 257 (475)
Q Consensus 216 l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 257 (475)
||+.+.+..+.|+++.-..-|..+...++++.|..++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666667777776666666667788899999998887764
No 309
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.82 E-value=26 Score=30.21 Aligned_cols=175 Identities=13% Similarity=0.062 Sum_probs=88.5
Q ss_pred HHHHHHHcCChHHHHHHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Q 038373 101 NLLSLCKEGKVREAIEYMGQDASAS-AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE--LNNKLIEMYGKCC 177 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~Li~~~~k~g 177 (475)
.+...++.|+.+-+..+++...... .+..-++ .|...+..|+++.+. .+.+.|..++.. ...+.+...+..|
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVK----YLIKAGALVDPKDAEGSTCLHLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHH----HHHTTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence 3455677888887777777643311 2222222 333445567765444 444556544321 1234455667788
Q ss_pred CHHHHHHHHHhcc----cCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCCHHHHHHH
Q 038373 178 NTRLARKVFDQLR----KRNLSSWHLMISGYAANGQGADGLMLFEQMRKTGPHPDKET--FLVVFAACASAEAVKEGFLY 251 (475)
Q Consensus 178 ~~~~A~~~f~~m~----~~~~~tyn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t--~~~li~~~~~~g~~~~a~~~ 251 (475)
+.+-+..+++.-. .+|..-++.|.. .+..|+.+ +++.+.+.|..++... -.+.+...+..|..+-+
T Consensus 89 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~--- 160 (237)
T 3b7b_A 89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIW-ATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA--- 160 (237)
T ss_dssp CHHHHHHHHTTTCCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH---
T ss_pred CHHHHHHHHhCCCCCcccCCCCCCCHHHH-HHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH---
Confidence 8888877776542 123223333333 34556543 4455556666554321 11233444455665543
Q ss_pred HHHHhhhCCCcCCHHH--HHHHHHHHHhcCCHHHHHHHHHh
Q 038373 252 FEIMKNDYGIVPGIEH--YIAIIKVLGSAGHLIEAEEFVER 290 (475)
Q Consensus 252 ~~~m~~~~g~~p~~~~--y~~li~~~~~~g~~~~A~~~~~~ 290 (475)
+.+. +.|..++... ..+.+...++.|+.+-+.-+++.
T Consensus 161 -~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 199 (237)
T 3b7b_A 161 -EILL-AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199 (237)
T ss_dssp -HHHH-TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred -HHHH-HcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc
Confidence 3344 2365554321 12344555677777665555543
No 310
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=22.74 E-value=4.4e+02 Score=24.06 Aligned_cols=103 Identities=15% Similarity=0.234 Sum_probs=61.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHhcccCCHH---------HHH
Q 038373 130 VFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCC--NTRLARKVFDQLRKRNLS---------SWH 198 (475)
Q Consensus 130 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g--~~~~A~~~f~~m~~~~~~---------tyn 198 (475)
.|-.+|-++.....-..|..+++.|...| .|. .+||..+|... ++....+.|..+-..++. .|-
T Consensus 73 ~f~~ll~~l~~~~~~~dA~~L~~A~kg~G--tde---~~lieIL~tRs~~ql~~i~~~Y~~~yg~~Le~dI~~e~sG~~~ 147 (315)
T 1dm5_A 73 NYEAAALALLRKPDEFLAEQLHAAMKGLG--TDK---NALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQ 147 (315)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHSSS--CCH---HHHHHHHSSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHccChhHHHHHHHHHHhhcCC--Cch---hhhhhhHhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCchHH
Confidence 46667777776655677888888886544 454 45666666433 355555556555444332 355
Q ss_pred HHHHHHHhcCCh-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038373 199 LMISGYAANGQG-----------ADGLMLFEQMRKTGPHPDKETFLVVFAA 238 (475)
Q Consensus 199 ~li~~~~~~g~~-----------~~A~~l~~~M~~~g~~pd~~t~~~li~~ 238 (475)
-++.++++..+. .+|..|++.|... ...|..+++.+|..
T Consensus 148 ~~L~~lv~~~r~~~~~vd~~~a~~dA~~L~~A~~~~-~GTde~~lirIl~~ 197 (315)
T 1dm5_A 148 RLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEGQ-IGTDESRFNAVLAT 197 (315)
T ss_dssp HHHHHHHTTCCCTTCCCCHHHHHHHHHHHHHHTTTS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHccccCCCCCCCHHHHHHHHHHHHHHhhCc-CCCcHHHHHHHHHh
Confidence 555555554432 4577777777542 34577777777643
No 311
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.33 E-value=1e+02 Score=20.53 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=31.1
Q ss_pred hHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 038373 111 VREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKD 162 (475)
Q Consensus 111 ~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 162 (475)
.++.++.+.+|.. ..|..+...++.+ ..|+++.|...+-+|...++.|+
T Consensus 9 ~ee~l~~L~emFP-~ld~~~I~~vL~a--~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 9 SEEDLKAIQDMFP-NMDQEVIRSVLEA--QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHCS-SSCHHHHHHHHTT--TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CHHHHHHHHHHCC-CCCHHHHHHHHHH--cCCCHHHHHHHHHcCcCCCCCCC
Confidence 3566667777653 2455555555553 35788888888887776666664
No 312
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=22.24 E-value=59 Score=28.62 Aligned_cols=83 Identities=11% Similarity=-0.106 Sum_probs=45.4
Q ss_pred HHHHHHHcCChHHHHHHHHhccc---C-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH
Q 038373 101 NLLSLCKEGKVREAIEYMGQDAS---A-SAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVE--LNNKLIEMYG 174 (475)
Q Consensus 101 li~~~~~~g~~~~A~~l~~~~~~---~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~Li~~~~ 174 (475)
.+...++.|+.+-+..+++.... . ..|..-.+ .|...+..|+++- .+.+.+.|..++.. ...+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~g~tpL~~A~ 86 (282)
T 1oy3_D 12 ALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQT-ALHLAAILGEAST----VEKLYAAGAGVLVAERGGHTALHLAC 86 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCC-HHHHHHHHTCHHH----HHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCC-HHHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 34456778888877777765332 0 12221122 2334455677654 44455567665432 1223455566
Q ss_pred HcCCHHHHHHHHHh
Q 038373 175 KCCNTRLARKVFDQ 188 (475)
Q Consensus 175 k~g~~~~A~~~f~~ 188 (475)
+.|+.+-+..+++.
T Consensus 87 ~~~~~~~v~~Ll~~ 100 (282)
T 1oy3_D 87 RVRAHTCACVLLQP 100 (282)
T ss_dssp TTTCHHHHHHHSSS
T ss_pred HcCCcchhHhhhcc
Confidence 77888877777654
No 313
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=22.01 E-value=1e+02 Score=24.08 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=11.1
Q ss_pred HHHHHHcCChHHHHHHHHhc
Q 038373 102 LLSLCKEGKVREAIEYMGQD 121 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~~ 121 (475)
+...++.|+.+....+++..
T Consensus 6 L~~A~~~g~~~~v~~Ll~~g 25 (153)
T 1awc_B 6 LLEAARAGQDDEVRILMANG 25 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcC
Confidence 34445566666666565554
No 314
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.50 E-value=1.2e+02 Score=23.91 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=11.3
Q ss_pred HHHHHHcCChHHHHHHHHh
Q 038373 102 LLSLCKEGKVREAIEYMGQ 120 (475)
Q Consensus 102 i~~~~~~g~~~~A~~l~~~ 120 (475)
+...++.|+.+....+++.
T Consensus 12 l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3345666777666666653
No 315
>3q5w_A Protein CUT8; proteasome, tether, chromosome, cell cycle, dimer, NOVE; 2.75A {Schizosaccharomyces pombe} PDB: 3q5x_A
Probab=21.34 E-value=4.2e+02 Score=23.30 Aligned_cols=45 Identities=16% Similarity=0.044 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHH
Q 038373 91 GNAQLESLDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSC 138 (475)
Q Consensus 91 ~~~~~~~~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~ 138 (475)
..-|......||..+++ .+++-+.++...+.+ ||...+..+|..+
T Consensus 60 EtLdk~qL~sLL~~L~~-~HPel~qeI~~~~P~--Psl~~al~~L~~~ 104 (245)
T 3q5w_A 60 QYSDKQQLFTILLQCVE-KHPDLARDIRGILPA--PSMDTCVETLRKL 104 (245)
T ss_dssp TSSCHHHHHHHHHHHHH-HCTHHHHHHHTTSCC--CCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH-hCchHHHHHhhcCCC--CCHHHHHHHHHHH
Confidence 34667777888888885 566766667666665 8887776666654
No 316
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.19 E-value=2.9e+02 Score=24.73 Aligned_cols=212 Identities=9% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcccCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHH
Q 038373 99 DVNLLSLCKEGKVREAIEYMGQDASAS--AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNN--KLIEMYG 174 (475)
Q Consensus 99 n~li~~~~~~g~~~~A~~l~~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~Li~~~~ 174 (475)
...+...++.|+.+....++.+....- .|..-.+.|..|+.... .++.+.+.+.|..++..... +.+..-+
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNR-----VRIVQLLLQHGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q ss_pred HcCCHHHHHHHHHhcccCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----------------------
Q 038373 175 KCCNTRLARKVFDQLRKRNLSSWH--LMISGYAANGQGADGLMLFEQMRKTGPHPDK----------------------- 229 (475)
Q Consensus 175 k~g~~~~A~~~f~~m~~~~~~tyn--~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~----------------------- 229 (475)
+.|+.+-+..+++.=...+..... +.+...+..|+ .++++.+.+.|..|+.
T Consensus 100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~ 175 (351)
T 3utm_A 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR----VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY 175 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHh
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 038373 230 ETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAG-HLIEAEEFVERMPFEPTVEVW--EALRNF 306 (475)
Q Consensus 230 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g-~~~~A~~~~~~m~~~p~~~t~--~~li~~ 306 (475)
.....-+...+..+..+....++..-. . ....+....+.|..+..... ...+..+++-+-|..++.... .+.+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 253 (351)
T 3utm_A 176 EFKGHSLLQAAREADLAKVKKTLALEI-I-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHV 253 (351)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTTCC-T-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hhcccHHHHHHHhccHHHHHHHHHhhc-c-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHH
Q ss_pred HHHcCCchHHHHHHH
Q 038373 307 AQIHGDVELEDRAEE 321 (475)
Q Consensus 307 ~~~~g~~~~a~~~~~ 321 (475)
.+..|+.+.++...+
T Consensus 254 A~~~g~~~~v~~Ll~ 268 (351)
T 3utm_A 254 AAERAHNDVMEVLHK 268 (351)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.82 E-value=1.3e+02 Score=22.23 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 038373 244 AVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEA 284 (475)
Q Consensus 244 ~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A 284 (475)
..+.|.++++.+..+ | ...|..+++++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~r-G----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETR-G----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTS-C----TTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHc-C----hHHHHHHHHHHHHcCcHHHH
Confidence 455566666655532 3 12456666666555554444
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.81 E-value=26 Score=30.81 Aligned_cols=26 Identities=12% Similarity=-0.167 Sum_probs=15.3
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCC
Q 038373 137 SCGNLKSIEMGKRVHELLRTSAFVKD 162 (475)
Q Consensus 137 ~~~~~~~~~~a~~~~~~m~~~g~~p~ 162 (475)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34455666666666666666555444
No 319
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.38 E-value=4.5e+02 Score=23.98 Aligned_cols=95 Identities=11% Similarity=0.001 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHH----HHhcCCHHHHHHHHHh
Q 038373 215 MLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKV----LGSAGHLIEAEEFVER 290 (475)
Q Consensus 215 ~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~----~~~~g~~~~A~~~~~~ 290 (475)
++++.+.+.|+.|..+++.-++..+++.=.++.+.++|+.+..+ |...-....-+++.. +.++.+.++..+++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~-g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ-GTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC-CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 56777888899999899999999998888899999999998865 654212222233332 3345688899999988
Q ss_pred CCCCCCHHHHHHHHHHHHHc
Q 038373 291 MPFEPTVEVWEALRNFAQIH 310 (475)
Q Consensus 291 m~~~p~~~t~~~li~~~~~~ 310 (475)
..-..+......+|.-....
T Consensus 288 ~~p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 288 TLPNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp TTTCCCHHHHHHHHHHHHHC
T ss_pred hCCCCCHHHHHHHHHHHHhC
Confidence 52234555566666533333
No 320
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=20.33 E-value=4.4e+02 Score=24.53 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH-----HHHH
Q 038373 98 LDVNLLSLCKEGKVREAIEYMGQDASASAGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNK-----LIEM 172 (475)
Q Consensus 98 ~n~li~~~~~~g~~~~A~~l~~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-----Li~~ 172 (475)
|-.+|-++...---.+|..+.+.|...|.|..+..-+| +.....++....+.|..+-...+.-|+..-.+ ++-+
T Consensus 104 fe~~l~~l~~~p~~~DA~~L~~AmkG~GTde~~LieIL-~~Rsn~q~~~Ik~aY~~~y~~~Le~di~se~sG~f~~ll~~ 182 (346)
T 1hm6_A 104 LEEVALALLKTPAQFDADELRAAMKGLGTDEDTLNEIL-ASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLS 182 (346)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHH-HHSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHhhccCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhchhHHHHHhhccCCcHHHHHHH
Q ss_pred HHHcCCHH-----------HHHHHHHhcccCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCC---------HH
Q 038373 173 YGKCCNTR-----------LARKVFDQLRKRNLSSWHLMISGYAANGQG--ADGLMLFEQMRKTGPHPD---------KE 230 (475)
Q Consensus 173 ~~k~g~~~-----------~A~~~f~~m~~~~~~tyn~li~~~~~~g~~--~~A~~l~~~M~~~g~~pd---------~~ 230 (475)
++...+.+ +|..+++.+..+--.--.++|..++..... ....+.|+++-...+.-+ ..
T Consensus 183 L~~~~R~e~~~vd~~~a~~DA~~L~~A~~~~~Gtde~~li~IL~tRS~~~L~~i~~~Y~~~~g~~Le~~I~~e~sG~~~~ 262 (346)
T 1hm6_A 183 LAKGDRSEDLAINDDLADTDARALYEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLDLELKGDIEN 262 (346)
T ss_dssp HHTTCCCCCCSCCHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHSCHHHHHHHHHHHHTTCCCCTTSBCCCCCBHHHHH
T ss_pred HhhccccccCCCCchHHHHHHHHHHHHHhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCchHHH
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038373 231 TFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGHLIEAEEFVERM 291 (475)
Q Consensus 231 t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~~~~~m 291 (475)
.+.+++.+........ |..+++.|+ |.-.|..+..-+|-. ...-++....+.|+++
T Consensus 263 ~L~~lv~~~r~~~~~~-A~~L~~A~~---g~GTde~~lirIlvs-Rs~~dL~~I~~~Y~~~ 318 (346)
T 1hm6_A 263 CLTVVVKCATSKPMFF-AEKLHQAMK---GIGTRHKTLIRIMVS-RSEIDMNDIKACYQKL 318 (346)
T ss_dssp HHHHHHHHHHCHHHHH-HHHHHHHHS---SSSCCHHHHHHHHHH-TTTTTHHHHHHHHHHH
T ss_pred HHHHHHhhcCCccHHH-HHHHHHHhc---CCCCCHHHHhHHHhh-CCHHHHHHHHHHHHHH
No 321
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=20.22 E-value=3.5e+02 Score=22.00 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHH
Q 038373 126 AGYDVFSSLLDSCGNLKSIEMGKRVHELLRTSAFVKDVELNNKLIEMYGKCCNTRLARKVFDQLRKRNLSSWHLMISGYA 205 (475)
Q Consensus 126 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~Li~~~~k~g~~~~A~~~f~~m~~~~~~tyn~li~~~~ 205 (475)
+|..+-...+.++++.+.-+....+.+.+ + .+|..+-...+.++++.|..+....+.+.+..+|...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55555555556666555533333333322 2 4566666777777777777666666666666777776677777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhhCCCcCCHHHHHHHHHHHHhcCC
Q 038373 206 ANGQGADGLMLFEQMRKTGPHPDKETFLVVFAACASAEAVKEGFLYFEIMKNDYGIVPGIEHYIAIIKVLGSAGH 280 (475)
Q Consensus 206 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~y~~li~~~~~~g~ 280 (475)
+.|..+ +...+.++.. .+|...=...+.++.+.+.-+ +...+..+.. .++..+-...+.++++.|.
T Consensus 102 ~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 102 QIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS
T ss_pred HhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc
Confidence 777653 4444444443 456666666667777666533 3333333332 2455555666666766665
No 322
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.15 E-value=2.2e+02 Score=22.33 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=22.8
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 038373 272 IKVLGSAGHLIEAEEFVERMPFEPT---VEVWEALRNFAQIHGDVELEDRAEELL 323 (475)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~m~~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~l 323 (475)
+...+..|+.+-+..+++ -|..++ ..-++ -+...+..|+.+.++...+..
T Consensus 106 L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 106 LLYAVHGNHVKCVKMLLE-SGADPTIETDSGYN-SMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp HHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHHH
Confidence 334455676665555554 332222 11122 334445567765544444443
Done!