BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038375
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B38|A Chain A, Structure Of A104v Dj-1
Length = 192
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L AVICA P AL + + G K T +P ++
Sbjct: 77 GGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGPT-ALLAHEIGFGSKVTTHPLAKDK 135
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 190
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG+ G+ + ES ++ +++ Q S G L A ICA+P L G+ G T YPS Q
Sbjct: 75 GGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT-VLAKHGVASGKSLTSYPSMKPQ 133
Query: 61 LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTF 116
L + + V +DG ++TSRGP T EFA+ + E+L GKE+ EV+ L+V +
Sbjct: 134 LVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLVAY 189
>pdb|3B36|A Chain A, Structure Of M26l Dj-1
Length = 192
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 77 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 135
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 190
>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1
pdb|1PE0|B Chain B, Crystal Structure Of The K130r Mutant Of Human Dj-1
Length = 197
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLARDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|2RK3|A Chain A, Structure Of A104t Dj-1
Length = 197
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1
Length = 197
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|2RK4|A Chain A, Structure Of M26i Dj-1
Length = 197
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1
Length = 197
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1UCF|B Chain B, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1P5F|A Chain A, Crystal Structure Of Human Dj-1
pdb|1Q2U|A Chain A, Crystal Structure Of Dj-1RS AND IMPLICATION ON FAMILIAL
PARKINSON'S Disease
pdb|2OR3|A Chain A, Pre-Oxidation Complex Of Human Dj-1
pdb|2OR3|B Chain B, Pre-Oxidation Complex Of Human Dj-1
Length = 189
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1
Length = 197
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification
pdb|2R1U|B Chain B, Dj-1 Activation By Catechol Quinone Modification
Length = 187
Score = 78.6 bits (192), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 73 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 131
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186
>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1
Length = 189
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGCGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group
pdb|1PDW|A Chain A, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|B Chain B, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|C Chain C, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|D Chain D, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|E Chain E, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|F Chain F, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|G Chain G, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|H Chain H, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
Length = 197
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 XXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|B Chain B, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|C Chain C, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|D Chain D, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|E Chain E, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|F Chain F, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|G Chain G, Crystal Structure Of Aggregated Form Of Dj1
Length = 189
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+
Sbjct: 133 XXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106
Length = 196
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A I A P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN 119
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ +++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLEH 192
>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106
Length = 196
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A I A P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN 119
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ +++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLEH 192
>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|B Chain B, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A I A P AL + + G K T +P ++
Sbjct: 73 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPT-ALLAHEIGFGSKVTTHPLAKDK 131
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186
>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|A Chain A, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A I A P AL + + G K T +P ++
Sbjct: 73 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGPT-ALLAHEIGFGSKVTTHPLAKDK 131
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+
Sbjct: 132 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 186
>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1
Length = 197
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A I A P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid
Length = 189
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A I A P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 187
>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 2/119 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A I A P AL + + G K T +P ++
Sbjct: 74 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 132
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118
+ T E+RV +DG ++TSRGP T+ EFA+A+VE L GKE A +V PLV+ ++
Sbjct: 133 MMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLKDLE 191
>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1
Length = 192
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A ICA P AL + + G K T +P ++
Sbjct: 77 GGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPT-ALLAHEIGFGSKVTTHPLAKDK 135
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+ V +DG ++TSRGP T+ +FA+A+VE L GKE A +V PLV+
Sbjct: 136 MMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVL 190
>pdb|2RK6|A Chain A, Structure Of E163k Dj-1
Length = 192
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG GA NL ES ++ I+K+Q + L A I A P AL + + G K T +P ++
Sbjct: 77 GGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGPT-ALLAHEIGFGSKVTTHPLAKDK 135
Query: 61 LAPACATTV-ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ T E+RV +DG ++TSRGP T+ +FA+A+VE L GKE A +V PLV+
Sbjct: 136 MMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAIVEALNGKEVAAQVKAPLVL 190
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG+ GA ++S +L VK+ GR+ A ICA+PA L + T +P+ ++
Sbjct: 74 GGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDK 133
Query: 61 LAPACATTVESRVPQDGKV--VTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ PA ++ RV D +V +TS+GP T ++F + +++ L G+E+A EV+ LV+
Sbjct: 134 I-PA-EQWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVM 187
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GGV GA +S L +++ + G+L A ICA+PA + G + TC+P+F +
Sbjct: 79 GGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARXTCHPNFFDH 138
Query: 61 LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ + ++TS+GP T +EFA+A + L G E A V+ P V+
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXVL 192
>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 3 VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
+PG T L E + +++QA+ R +C S + LG+ GLL+G +AT + ++ E
Sbjct: 71 IPGGTGVGALMEDPQALAFIRQQAARARYVTSVC-SGSLVLGAAGLLQGKRATTHWAYHE 129
Query: 60 QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 3 VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
+PG T L E + +++QA+ R +C + LG+ GLL+G +AT + ++ E
Sbjct: 71 IPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTHWAYHE 129
Query: 60 QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOO|B Chain B, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 3 VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
+PG T L E + +++QA+ R + A+ + LG+ GLL+G +AT + ++ E
Sbjct: 71 IPGGTGVGALMEDPQALAFIRQQAARARYVTSV-ATGSLVLGAAGLLQGKRATTHWAYHE 129
Query: 60 QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GGV GA +S L +++ + G+L A I A+PA + G + TC+P+F +
Sbjct: 79 GGVGGAQAFADSTALLALIDAFSQQGKLVAAIXATPALVFAKQQKFVGARXTCHPNFFDH 138
Query: 61 LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVV 114
+ + ++TS+GP T +EFA+A + L G E A V+ P V+
Sbjct: 139 IPSERLSRQRVCYYATQHLLTSQGPGTALEFALAXIALLAGVELAQHVAAPXVL 192
>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOQ|B Chain B, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 3 VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
+PG T L E + +++QA+ R + + LG+ GLL+G +AT + ++ E
Sbjct: 71 IPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTG-SLVLGAAGLLQGKRATTHWAYHE 129
Query: 60 QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
pdb|3NON|B Chain B, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
Length = 231
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 3 VPGATN---LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
+PG T L E + +++QA+ R + + LG+ GLL+G +AT + ++ E
Sbjct: 71 IPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTG-SLVLGAAGLLQGKRATTHWAYHE 129
Query: 60 QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 130 LLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|B Chain B, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|C Chain C, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
G P L E V SI +K S+G+ A IC P + L S G+L+G K T YP +
Sbjct: 70 GRAPERVRLNEKAV--SIARKXFSEGKPVASICHGP-QILISAGVLRGRKGTSYPGIKDD 126
Query: 61 LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
A V++ V DG V+SR P + V+ L
Sbjct: 127 XINAGVEWVDAEVVVDGNWVSSRVPADLYAWXREFVKLL 165
>pdb|3EWN|A Chain A, Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM
PSEUDOMONAS Syringae
Length = 253
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 40 LGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
LG+ GLLKG KAT + S + LA A E+RV +D +T G ++F ++ V +L
Sbjct: 130 LGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRITGAGVTAGLDFGLSXVAEL 189
Query: 100 YGKERAD 106
+ A+
Sbjct: 190 RDQTYAE 196
>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
pdb|3MGK|B Chain B, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
Length = 211
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 3 VPGATNLKE---SEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
VPG + +E + + + + + +C A L G+L G +AT +
Sbjct: 71 VPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSA-LLSKAGILNGKRATTNKRSFK 129
Query: 60 QLAPACATTV---ESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVS 109
+ + E+R +DG + TS G ++ + +E L GKE+A E+S
Sbjct: 130 WVTEQNEDVLWVKEARWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEIS 182
>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|B Chain B, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|C Chain C, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|D Chain D, Schizosaccharomyces Pombe Dj-1 T114p Mutant
Length = 194
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 1 GGVPGATNLKESEVLESIVKK-QASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME 59
GG GA L + ++ +VK+ + +I A P A S L + T +PS
Sbjct: 81 GGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGPLTAKTSG--LPNKQITGHPSVRG 138
Query: 60 QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEV 108
QL ++ V + ++TS+GP T M F + L+EQ+ K++ + V
Sbjct: 139 QLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
pdb|2VRN|B Chain B, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
Length = 190
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
GG L+ E V+ G+ A I P +L G+ +GLK T + S +
Sbjct: 83 GGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAIXHGPW-SLSETGIAQGLKMTSWSSLKRE 141
Query: 61 LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQL 99
L A A V+ D VVTSR P F +VE+
Sbjct: 142 LTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIVEEF 180
>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
pdb|3L18|B Chain B, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
Length = 168
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQ 60
G P L E V+ I ++ D + A IC P + L S +LKG + T + +
Sbjct: 72 GKAPEIVRLNEKAVM--ITRRMFEDDKPVASICHGP-QILISAKVLKGRRGTSTITIRDD 128
Query: 61 LAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLY 100
+ A A +++ V DG V+SR P + V+ L+
Sbjct: 129 VINAGAEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLLH 168
>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|B Chain B, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|C Chain C, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|D Chain D, Schizosaccharomyces Pombe Dj-1 T114v Mutant
Length = 194
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR-GLLKGLKATCYPSFME 59
GG GA L + ++ +VK+ + N I A L ++ L + T +PS
Sbjct: 81 GGGLGAKTLSTTPFVQQVVKEFYK--KPNKWIGMIXAGVLTAKTSGLPNKQITGHPSVRG 138
Query: 60 QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPL 112
QL ++ V + ++TS+GP T M F + L+EQ+ K++ + V L
Sbjct: 139 QLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSL 191
>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|B Chain B, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|C Chain C, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|D Chain D, Schizosaccharomyces Pombe Dj-1
Length = 194
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR-GLLKGLKATCYPSFME 59
GG GA L + ++ +VK+ + N I A L ++ L + T +PS
Sbjct: 81 GGGLGAKTLSTTPFVQQVVKEFYK--KPNKWIGMIXAGTLTAKTSGLPNKQITGHPSVRG 138
Query: 60 QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLYGKERADEVSGPL 112
QL ++ V + ++TS+GP T M F + L+EQ+ K++ + V L
Sbjct: 139 QLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSL 191
>pdb|3ER6|A Chain A, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|B Chain B, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|C Chain C, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|D Chain D, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|E Chain E, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
pdb|3ER6|F Chain F, Crystal Structure Of A Putative Transcriptional Regulator
Protein From Vibrio Parahaemolyticus
Length = 209
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 44 GLLKGLKATCYPSFME---QLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALVEQLY 100
GLL+ KA + F +L P E + DG V S GP + + +VE+ +
Sbjct: 125 GLLQQNKAVMHSYFAHLFGELFPEIMLMTEQKALIDGNVYLSSGPYSHSSVMLEIVEEYF 184
Query: 101 GKE 103
GK
Sbjct: 185 GKH 187
>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
pdb|3FSE|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
Length = 365
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 19 VKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGK 78
V++ G+L A + P + L LL+G +AT + + + A A ++ + DG
Sbjct: 98 VQEAXEQGKLVAAVXHGP-QVLIEGDLLRGKQATGFIAISKDXXNAGADYLDEALVVDGN 156
Query: 79 VVTSRGPCTTMEFAVALVEQL-YGKERA 105
++TSR P F A++ +L YG + A
Sbjct: 157 LITSREPGDLAIFTTAILSRLGYGGKDA 184
>pdb|4HCJ|A Chain A, Crystal Structure Of ThijPFPI DOMAIN PROTEIN FROM
BRACHYSPIRA Murdochii
Length = 177
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 45 LLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVALV 96
+L+ + TC + + A V G +VT+ GP ++ +FA A+V
Sbjct: 119 ILEEINVTCLSADESHVRHGNANIXSENVVVSGNIVTANGPTSSKDFANAVV 170
>pdb|2YFS|A Chain A, Crystal Structure Of Inulosucrase From Lactobacillus
Johnsonii Ncc533 In Complex With Sucrose
Length = 571
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 47 KGLKATCYPSFMEQLAPACATTVESRVPQDG 77
KG+ AT PSF+ Q+ P TTV +++ G
Sbjct: 486 KGMHATWAPSFLLQINPDNTTTVLAKMTNQG 516
>pdb|2YFR|A Chain A, Crystal Structure Of Inulosucrase From Lactobacillus
Johnsonii Ncc533
pdb|2YFT|A Chain A, Crystal Structure Of Inulosucrase From Lactobacillus
Johnsonii Ncc533 In Complex With 1-Kestose
Length = 571
Score = 29.3 bits (64), Expect = 0.60, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 47 KGLKATCYPSFMEQLAPACATTVESRVPQDG 77
KG+ AT PSF+ Q+ P TTV +++ G
Sbjct: 486 KGMHATWAPSFLLQINPDNTTTVLAKMTNQG 516
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATT 68
+K+++ L+ + K DG+L + + + GL+ TC +E P +T
Sbjct: 52 IKKAQELDELQAKDQMDGKLFGIPMG-----IKDNIITNGLETTCASKMLEGFVPIYEST 106
Query: 69 VESRVPQDGKVVTSRGPCTTMEFAV 93
V ++ ++ V+ G EFA+
Sbjct: 107 VMEKLHKENAVLI--GKLNMDEFAM 129
>pdb|1HFB|A Chain A, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|B Chain B, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|C Chain C, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|D Chain D, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|E Chain E, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|F Chain F, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|G Chain G, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1HFB|H Chain H, Crystal Structure Of The Tyrosine-Regulated 3-Deoxy-D-
Arabino-Heptulosonate-7-Phosphate Synthase From
Saccharomyces Cerevisiae Complexed With
Phosphoenolpyruvate
pdb|1OAB|A Chain A, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Manganese(Ii)
pdb|1OAB|B Chain B, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Manganese(Ii)
pdb|1OF8|A Chain A, Double Complex Of The Tyrosine Sensitive Dahp Synthase
From S. Cerevisiae With Co2+, Pep And The E4p Analogoue
G3p
pdb|1OF8|B Chain B, Double Complex Of The Tyrosine Sensitive Dahp Synthase
From S. Cerevisiae With Co2+, Pep And The E4p Analogoue
G3p
pdb|1OFA|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Cobalt(Ii)
pdb|1OFA|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Phosphoenolpyruvate And Cobalt(Ii)
pdb|1OFB|A Chain A, Crystal Structure Of The Tyrosine-regulated
3-deoxy-d-arabino-heptulosonate-7-phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(ii)
pdb|1OFB|B Chain B, Crystal Structure Of The Tyrosine-regulated
3-deoxy-d-arabino-heptulosonate-7-phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(ii)
pdb|1OFO|A Chain A, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
2-Phosphoglycolate
pdb|1OFO|B Chain B, Crystal Structure Of The Tyrosine Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
2-Phosphoglycolate
pdb|1OFP|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFP|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFP|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFP|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae
pdb|1OFQ|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFQ|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFQ|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFQ|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With
Manganese(Ii)
pdb|1OFR|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|E Chain E, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|F Chain F, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OF6|A Chain A, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|B Chain B, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|E Chain E, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|F Chain F, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|G Chain G, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OF6|H Chain H, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With Tyrosine
And Manganese
pdb|1OFR|C Chain C, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|D Chain D, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|G Chain G, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OFR|H Chain H, Crystal Structure Of The Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
Length = 370
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 48 GLKATCYPSFMEQLAPACATTVESR-----------VPQDGKVVTSRGPCTTMEFAVALV 96
G P+ ++ PA T++E+ +D +V+ GPC+ + A
Sbjct: 27 GYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQE 86
Query: 97 EQLYGKERADEVSGPLVV 114
L K+ +DE+ G L +
Sbjct: 87 YALRLKKLSDELKGDLSI 104
>pdb|1OG0|B Chain B, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|A Chain A, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|C Chain C, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|D Chain D, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|E Chain E, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|F Chain F, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|G Chain G, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
pdb|1OG0|H Chain H, Crystal Structure Of The Mutant G226s Of The
Tyrosine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
From Saccharomyces Cerevisiae Complexed With
Phenylalanine And Manganese
Length = 370
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 48 GLKATCYPSFMEQLAPACATTVESR-----------VPQDGKVVTSRGPCTTMEFAVALV 96
G P+ ++ PA T++E+ +D +V+ GPC+ + A
Sbjct: 27 GYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQE 86
Query: 97 EQLYGKERADEVSGPLVV 114
L K+ +DE+ G L +
Sbjct: 87 YALRLKKLSDELKGDLSI 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,169,916
Number of Sequences: 62578
Number of extensions: 103028
Number of successful extensions: 279
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 49
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)