Query 038375
Match_columns 121
No_of_seqs 105 out of 1073
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 10:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03139 GATase1_PfpI_2 Type 1 99.9 3.9E-26 8.5E-31 157.7 10.7 111 4-115 72-183 (183)
2 KOG2764 Putative transcription 99.9 4.2E-26 9E-31 160.8 10.3 117 1-117 75-191 (247)
3 cd03138 GATase1_AraC_2 AraC tr 99.9 8.8E-26 1.9E-30 157.7 10.5 107 8-115 86-195 (195)
4 COG4977 Transcriptional regula 99.9 7.5E-26 1.6E-30 168.6 10.7 113 6-119 88-202 (328)
5 cd03136 GATase1_AraC_ArgR_like 99.9 1.3E-25 2.8E-30 155.8 10.9 106 9-115 78-185 (185)
6 TIGR01383 not_thiJ DJ-1 family 99.9 4.6E-25 1E-29 152.0 11.5 107 1-110 71-178 (179)
7 cd03137 GATase1_AraC_1 AraC tr 99.9 7.3E-25 1.6E-29 152.0 10.7 111 4-115 74-187 (187)
8 PRK11574 oxidative-stress-resi 99.9 7.1E-23 1.5E-27 143.3 12.0 115 1-117 74-190 (196)
9 TIGR01382 PfpI intracellular p 99.9 3E-23 6.6E-28 141.5 9.8 95 4-99 70-165 (166)
10 PF01965 DJ-1_PfpI: DJ-1/PfpI 99.9 4E-23 8.6E-28 138.9 9.9 98 1-99 45-146 (147)
11 cd03135 GATase1_DJ-1 Type 1 gl 99.9 4.7E-23 1E-27 139.7 9.8 92 5-99 72-163 (163)
12 cd03134 GATase1_PfpI_like A ty 99.9 1.1E-22 2.4E-27 138.6 9.5 93 4-97 72-164 (165)
13 cd03169 GATase1_PfpI_1 Type 1 99.9 2E-22 4.4E-27 139.4 9.6 95 4-99 86-180 (180)
14 cd03147 GATase1_Ydr533c_like T 99.9 1.9E-22 4.1E-27 144.9 9.7 98 1-99 102-231 (231)
15 PRK09393 ftrA transcriptional 99.9 6.4E-22 1.4E-26 147.8 11.5 113 4-118 85-200 (322)
16 PF13278 DUF4066: Putative ami 99.9 6E-22 1.3E-26 135.2 9.2 91 6-97 73-166 (166)
17 PRK04155 chaperone protein Hch 99.9 7.2E-22 1.6E-26 145.7 10.2 100 1-101 155-283 (287)
18 cd03141 GATase1_Hsp31_like Typ 99.9 3.6E-21 7.7E-26 137.5 9.8 98 1-99 98-221 (221)
19 cd03148 GATase1_EcHsp31_like T 99.9 5.3E-21 1.1E-25 137.5 10.4 99 1-100 104-232 (232)
20 cd03140 GATase1_PfpI_3 Type 1 99.8 2.1E-20 4.5E-25 128.4 9.7 89 10-100 75-167 (170)
21 COG0693 ThiJ Putative intracel 99.8 2.8E-19 6E-24 124.4 9.7 102 1-103 74-186 (188)
22 cd03133 GATase1_ES1 Type 1 glu 99.7 3.1E-16 6.8E-21 111.4 7.5 83 10-94 109-201 (213)
23 PRK11780 isoprenoid biosynthes 99.6 5.9E-16 1.3E-20 110.4 7.7 77 7-85 109-192 (217)
24 cd03132 GATase1_catalase Type 98.7 3.9E-08 8.5E-13 65.3 6.8 45 1-46 70-114 (142)
25 cd01740 GATase1_FGAR_AT Type 1 98.6 9.6E-08 2.1E-12 69.0 5.2 66 15-83 71-136 (238)
26 PRK03619 phosphoribosylformylg 98.2 3.4E-06 7.4E-11 60.3 5.3 40 10-50 63-102 (219)
27 COG3155 ElbB Uncharacterized p 98.0 4.8E-05 1E-09 52.1 7.0 83 1-84 93-191 (217)
28 TIGR01737 FGAM_synth_I phospho 97.8 5.2E-05 1.1E-09 54.4 5.4 39 10-49 62-100 (227)
29 PRK01175 phosphoribosylformylg 97.7 8E-05 1.7E-09 54.7 5.2 33 15-48 78-110 (261)
30 PRK11249 katE hydroperoxidase 97.7 6.8E-05 1.5E-09 62.0 4.8 46 1-47 666-711 (752)
31 PRK13526 glutamine amidotransf 97.2 0.00029 6.3E-09 49.0 2.5 39 1-42 47-87 (179)
32 cd03130 GATase1_CobB Type 1 gl 97.2 0.00049 1.1E-08 48.4 3.6 36 6-42 55-90 (198)
33 TIGR03800 PLP_synth_Pdx2 pyrid 96.8 0.00093 2E-08 46.6 2.7 35 8-43 52-86 (184)
34 COG0047 PurL Phosphoribosylfor 96.5 0.0062 1.3E-07 43.8 4.9 35 13-48 68-102 (231)
35 PRK13525 glutamine amidotransf 96.4 0.0034 7.4E-08 43.8 3.2 33 9-42 55-87 (189)
36 PRK01077 cobyrinic acid a,c-di 96.4 0.0038 8.3E-08 49.1 3.5 41 1-42 295-337 (451)
37 PRK13143 hisH imidazole glycer 96.3 0.0041 8.9E-08 43.7 3.0 34 9-43 54-87 (200)
38 PRK13527 glutamine amidotransf 96.3 0.0051 1.1E-07 43.2 3.4 34 9-43 60-93 (200)
39 cd01653 GATase1 Type 1 glutami 96.0 0.016 3.4E-07 34.8 4.3 29 11-40 64-92 (115)
40 PF13507 GATase_5: CobB/CobQ-l 96.0 0.0045 9.8E-08 45.5 2.0 39 9-48 72-111 (259)
41 cd01750 GATase1_CobQ Type 1 gl 95.9 0.0073 1.6E-07 42.3 2.7 31 12-43 58-88 (194)
42 PRK08250 glutamine amidotransf 95.7 0.02 4.3E-07 41.3 4.3 30 13-43 71-100 (235)
43 cd03128 GAT_1 Type 1 glutamine 95.6 0.018 4E-07 33.0 3.3 26 11-36 64-89 (92)
44 cd01741 GATase1_1 Subgroup of 95.3 0.027 5.9E-07 38.9 3.9 30 12-42 67-96 (188)
45 PRK13141 hisH imidazole glycer 95.1 0.014 3E-07 41.0 2.0 30 13-43 59-88 (205)
46 PRK07053 glutamine amidotransf 95.1 0.038 8.2E-07 39.9 4.3 30 13-43 70-99 (234)
47 cd01744 GATase1_CPSase Small c 95.1 0.051 1.1E-06 37.4 4.7 31 11-42 54-84 (178)
48 cd01749 GATase1_PB Glutamine A 94.5 0.032 6.9E-07 38.7 2.4 31 11-42 54-84 (183)
49 PF07685 GATase_3: CobB/CobQ-l 94.5 0.04 8.7E-07 37.3 2.9 35 8-43 24-58 (158)
50 PRK05665 amidotransferase; Pro 94.1 0.081 1.8E-06 38.4 3.9 30 13-43 78-107 (240)
51 cd01745 GATase1_2 Subgroup of 93.4 0.16 3.5E-06 35.3 4.4 30 12-42 86-115 (189)
52 TIGR01857 FGAM-synthase phosph 93.4 0.1 2.2E-06 45.9 4.0 40 8-48 1056-1095(1239)
53 PLN02832 glutamine amidotransf 93.3 0.085 1.8E-06 38.6 2.9 37 6-43 52-88 (248)
54 PF00117 GATase: Glutamine ami 93.3 0.15 3.3E-06 35.1 4.1 30 12-42 58-87 (192)
55 PF01174 SNO: SNO glutamine am 93.2 0.057 1.2E-06 37.9 1.8 36 6-42 47-83 (188)
56 PRK09065 glutamine amidotransf 93.1 0.15 3.2E-06 36.9 3.9 30 13-43 75-104 (237)
57 cd01748 GATase1_IGP_Synthase T 92.8 0.1 2.2E-06 36.5 2.6 32 11-43 56-87 (198)
58 PRK06490 glutamine amidotransf 92.6 0.21 4.6E-06 36.1 4.1 30 13-43 73-102 (239)
59 PRK06895 putative anthranilate 92.5 0.19 4.2E-06 34.9 3.7 30 12-43 59-88 (190)
60 TIGR00379 cobB cobyrinic acid 92.4 0.16 3.4E-06 40.1 3.4 34 8-42 303-336 (449)
61 PLN03206 phosphoribosylformylg 92.0 0.22 4.8E-06 44.2 4.1 42 7-49 1106-1148(1307)
62 CHL00188 hisH imidazole glycer 91.8 0.15 3.2E-06 36.3 2.4 35 14-49 62-105 (210)
63 PRK12564 carbamoyl phosphate s 91.4 0.44 9.4E-06 36.7 4.8 30 12-42 234-263 (360)
64 PRK14004 hisH imidazole glycer 91.3 0.25 5.3E-06 35.2 3.2 30 13-43 59-88 (210)
65 PRK07765 para-aminobenzoate sy 90.6 0.44 9.6E-06 33.9 3.9 30 12-42 62-91 (214)
66 COG0518 GuaA GMP synthase - Gl 90.1 0.45 9.7E-06 33.6 3.6 30 12-42 65-94 (198)
67 TIGR01855 IMP_synth_hisH imida 89.9 0.43 9.3E-06 33.3 3.4 27 16-43 61-87 (196)
68 COG0118 HisH Glutamine amidotr 89.8 0.35 7.6E-06 34.3 2.8 35 6-41 55-89 (204)
69 TIGR01739 tegu_FGAM_synt herpe 89.8 0.4 8.6E-06 42.4 3.7 41 6-47 996-1038(1202)
70 PRK13181 hisH imidazole glycer 89.5 0.43 9.3E-06 33.3 3.1 29 14-43 60-88 (199)
71 COG0311 PDX2 Predicted glutami 89.0 0.31 6.6E-06 34.2 2.0 35 7-42 53-87 (194)
72 TIGR00888 guaA_Nterm GMP synth 88.7 0.5 1.1E-05 32.6 3.0 28 15-43 59-86 (188)
73 PLN02617 imidazole glycerol ph 88.6 0.55 1.2E-05 38.1 3.5 31 12-43 65-95 (538)
74 PRK00784 cobyric acid synthase 87.8 0.55 1.2E-05 37.5 3.0 33 9-42 308-340 (488)
75 PRK11366 puuD gamma-glutamyl-g 87.7 0.95 2.1E-05 33.1 4.0 32 11-43 92-123 (254)
76 TIGR00566 trpG_papA glutamine 87.6 0.96 2.1E-05 31.4 3.8 29 13-43 60-88 (188)
77 TIGR01735 FGAM_synt phosphorib 87.6 0.85 1.8E-05 40.7 4.2 41 8-49 1125-1167(1310)
78 PHA03366 FGAM-synthase; Provis 87.3 0.66 1.4E-05 41.4 3.4 41 6-47 1095-1137(1304)
79 cd01746 GATase1_CTP_Synthase T 87.3 1.2 2.5E-05 32.3 4.3 28 12-39 70-97 (235)
80 TIGR00313 cobQ cobyric acid sy 87.0 0.59 1.3E-05 37.2 2.8 31 11-42 304-334 (475)
81 COG2071 Predicted glutamine am 86.4 1.4 2.9E-05 32.2 4.1 32 9-41 90-121 (243)
82 PRK05297 phosphoribosylformylg 86.3 1.2 2.7E-05 39.7 4.6 41 7-48 1104-1146(1290)
83 CHL00101 trpG anthranilate syn 86.2 0.73 1.6E-05 32.0 2.6 24 19-43 65-88 (190)
84 TIGR01368 CPSaseIIsmall carbam 86.0 1 2.3E-05 34.7 3.6 30 11-42 229-258 (358)
85 PRK07567 glutamine amidotransf 85.6 1.4 3.1E-05 31.9 3.9 27 16-43 83-109 (242)
86 PRK08007 para-aminobenzoate sy 85.6 0.87 1.9E-05 31.6 2.7 30 12-43 59-88 (187)
87 PRK13896 cobyrinic acid a,c-di 85.5 0.9 2E-05 35.9 3.0 33 8-42 291-323 (433)
88 cd01743 GATase1_Anthranilate_S 84.9 1.7 3.6E-05 29.9 3.9 28 15-43 60-87 (184)
89 PRK08857 para-aminobenzoate sy 84.8 1.1 2.4E-05 31.1 3.0 30 12-43 59-88 (193)
90 PRK06774 para-aminobenzoate sy 84.7 0.93 2E-05 31.4 2.6 28 14-43 61-88 (191)
91 PRK05670 anthranilate synthase 83.9 1.5 3.3E-05 30.2 3.4 28 14-43 61-88 (189)
92 PRK05637 anthranilate synthase 83.8 1.6 3.5E-05 30.9 3.5 28 14-43 62-89 (208)
93 PRK13146 hisH imidazole glycer 83.0 2.4 5.2E-05 30.0 4.1 27 17-44 68-94 (209)
94 PRK00758 GMP synthase subunit 82.8 1.5 3.3E-05 30.1 3.0 26 14-43 58-83 (184)
95 COG3442 Predicted glutamine am 82.6 0.97 2.1E-05 32.7 1.9 28 14-42 75-102 (250)
96 COG1797 CobB Cobyrinic acid a, 82.4 1.1 2.4E-05 35.5 2.3 41 1-42 296-338 (451)
97 cd01742 GATase1_GMP_Synthase T 82.2 2.2 4.7E-05 29.1 3.5 23 19-42 63-85 (181)
98 PRK12838 carbamoyl phosphate s 81.5 2.1 4.6E-05 33.0 3.6 30 11-42 223-252 (354)
99 PRK13152 hisH imidazole glycer 81.4 2.2 4.8E-05 29.8 3.4 27 16-43 62-89 (201)
100 TIGR01815 TrpE-clade3 anthrani 80.3 2 4.4E-05 36.1 3.3 31 12-43 574-604 (717)
101 PRK13566 anthranilate synthase 79.6 2 4.3E-05 36.2 3.1 30 13-43 585-614 (720)
102 PF01799 Fer2_2: [2Fe-2S] bind 79.4 0.2 4.3E-06 30.0 -2.1 41 9-50 5-45 (75)
103 cd01747 GATase1_Glutamyl_Hydro 78.6 4.6 0.0001 29.9 4.5 27 15-42 76-107 (273)
104 PRK13170 hisH imidazole glycer 78.4 1.9 4.2E-05 30.1 2.3 21 22-43 66-86 (196)
105 cd03144 GATase1_ScBLP_like Typ 77.3 1.3 2.7E-05 28.7 1.0 24 16-41 67-90 (114)
106 CHL00197 carA carbamoyl-phosph 76.9 4.1 8.8E-05 31.8 3.9 29 13-42 250-278 (382)
107 PF07722 Peptidase_C26: Peptid 73.0 4.7 0.0001 28.6 3.2 29 12-41 92-120 (217)
108 cd03146 GAT1_Peptidase_E Type 72.8 5.2 0.00011 28.2 3.4 28 14-42 102-129 (212)
109 PRK07649 para-aminobenzoate/an 70.8 4.4 9.5E-05 28.3 2.6 27 15-43 62-88 (195)
110 PRK05380 pyrG CTP synthetase; 68.4 9.1 0.0002 31.2 4.1 27 12-38 358-384 (533)
111 PRK13142 hisH imidazole glycer 66.9 7.5 0.00016 27.3 3.1 26 14-42 60-85 (192)
112 PRK05282 (alpha)-aspartyl dipe 66.6 4.7 0.0001 29.2 2.1 31 11-42 98-128 (233)
113 PRK06186 hypothetical protein; 64.4 14 0.0003 26.8 4.1 29 10-38 66-94 (229)
114 PLN02347 GMP synthetase 63.9 13 0.00029 30.2 4.4 25 18-43 78-102 (536)
115 PLN02771 carbamoyl-phosphate s 63.2 12 0.00025 29.7 3.7 30 12-43 297-326 (415)
116 PRK14607 bifunctional glutamin 62.7 7.8 0.00017 31.4 2.8 29 13-43 61-89 (534)
117 PRK09522 bifunctional glutamin 59.4 8.1 0.00018 31.4 2.4 20 23-43 74-93 (531)
118 PF07911 DUF1677: Protein of u 57.3 6.9 0.00015 24.3 1.3 23 12-35 17-39 (91)
119 COG0505 CarA Carbamoylphosphat 57.0 18 0.00039 28.1 3.7 30 13-43 237-266 (368)
120 PLN02335 anthranilate synthase 56.6 17 0.00036 26.0 3.4 26 15-42 81-106 (222)
121 TIGR00337 PyrG CTP synthase. C 55.2 17 0.00036 29.7 3.5 28 12-39 358-385 (525)
122 PF10034 Dpy19: Q-cell neurobl 54.0 6.8 0.00015 32.6 1.2 47 12-62 505-552 (642)
123 KOG3179 Predicted glutamine sy 53.5 21 0.00045 25.8 3.3 29 14-43 81-109 (245)
124 PF03575 Peptidase_S51: Peptid 52.1 9.1 0.0002 25.5 1.4 29 11-40 54-82 (154)
125 COG0512 PabA Anthranilate/para 51.7 21 0.00046 25.2 3.2 30 11-42 60-89 (191)
126 PRK06278 cobyrinic acid a,c-di 51.5 16 0.00035 29.4 2.8 27 13-43 55-81 (476)
127 TIGR01823 PabB-fungal aminodeo 50.7 26 0.00056 29.8 4.1 27 16-43 72-102 (742)
128 KOG0623 Glutamine amidotransfe 47.8 24 0.00052 27.5 3.2 31 11-41 59-89 (541)
129 PF09825 BPL_N: Biotin-protein 45.5 31 0.00066 26.9 3.5 30 12-43 68-97 (367)
130 PLN02327 CTP synthase 44.6 37 0.00081 27.9 4.0 29 13-41 378-406 (557)
131 cd03129 GAT1_Peptidase_E_like 38.8 33 0.00072 23.9 2.6 28 15-43 103-130 (210)
132 PRK00074 guaA GMP synthase; Re 37.3 38 0.00083 27.4 3.0 22 20-42 69-90 (511)
133 KOG3210 Imidazoleglycerol-phos 36.0 37 0.0008 23.8 2.4 23 14-36 78-101 (226)
134 cd03145 GAT1_cyanophycinase Ty 35.8 52 0.0011 23.3 3.3 30 11-41 102-131 (217)
135 cd01915 CODH Carbon monoxide d 34.9 1.4E+02 0.003 25.1 5.8 51 11-66 265-316 (613)
136 TIGR02922 conserved hypothetic 34.8 28 0.0006 20.1 1.3 17 21-37 39-55 (67)
137 PF04024 PspC: PspC domain; I 34.1 27 0.00057 19.8 1.2 13 24-36 8-20 (61)
138 PRK05320 rhodanese superfamily 34.0 1.3E+02 0.0027 22.1 5.1 52 25-79 174-233 (257)
139 PRK05368 homoserine O-succinyl 33.9 90 0.0019 23.6 4.3 26 15-40 124-149 (302)
140 PF09558 DUF2375: Protein of u 33.9 28 0.00061 20.3 1.3 23 19-41 39-61 (71)
141 PF14842 FliG_N: FliG N-termin 32.5 70 0.0015 20.0 3.1 34 86-119 72-105 (108)
142 TIGR02069 cyanophycinase cyano 30.9 54 0.0012 23.9 2.7 30 11-41 101-130 (250)
143 COG1054 Predicted sulfurtransf 30.4 55 0.0012 24.9 2.7 23 14-36 158-182 (308)
144 PF11760 CbiG_N: Cobalamin syn 30.3 38 0.00083 20.6 1.5 32 16-47 2-33 (84)
145 TIGR03193 4hydroxCoAred 4-hydr 30.0 10 0.00023 25.6 -1.1 34 14-48 81-114 (148)
146 TIGR03313 Se_sel_red_Mo probab 29.4 42 0.0009 29.5 2.2 74 13-101 77-150 (951)
147 PRK09800 putative hypoxanthine 27.1 43 0.00093 29.4 1.8 73 12-99 80-152 (956)
148 cd04795 SIS SIS domain. SIS (S 26.8 1.2E+02 0.0026 17.2 3.4 24 11-34 59-82 (87)
149 cd05014 SIS_Kpsf KpsF-like pro 26.6 1.1E+02 0.0024 19.0 3.4 25 11-35 59-83 (128)
150 PF00473 CRF: Corticotropin-re 26.2 94 0.002 16.1 2.4 28 84-111 1-28 (39)
151 PF01372 Melittin: Melittin; 24.9 89 0.0019 14.5 2.0 13 12-24 13-25 (26)
152 KOG0370 Multifunctional pyrimi 24.3 1.2E+02 0.0026 27.2 3.8 30 13-43 227-256 (1435)
153 cd00127 DSPc Dual specificity 22.5 1.1E+02 0.0024 19.2 2.9 24 13-36 68-91 (139)
154 PF01058 Oxidored_q6: NADH ubi 22.5 68 0.0015 20.8 1.8 24 12-35 59-82 (131)
155 COG2453 CDC14 Predicted protei 21.8 1.2E+02 0.0026 20.7 3.0 25 12-36 91-115 (180)
156 TIGR03198 pucE xanthine dehydr 21.5 61 0.0013 21.9 1.4 64 16-94 84-147 (151)
157 cd08321 Pyrin_ASC-like Pyrin D 20.1 1.2E+02 0.0027 18.1 2.5 33 77-109 49-81 (82)
158 PRK10697 DNA-binding transcrip 20.0 62 0.0013 21.0 1.2 13 24-36 13-25 (118)
No 1
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.94 E-value=3.9e-26 Score=157.71 Aligned_cols=111 Identities=28% Similarity=0.399 Sum_probs=102.3
Q ss_pred cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccccc-ccCcEEecCCeEcC
Q 038375 4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATT-VESRVPQDGKVVTS 82 (121)
Q Consensus 4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~-~~~~~v~dg~i~T~ 82 (121)
.++..+..|+.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.+..+ .++.++.|||++||
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~-~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~ 150 (183)
T cd03139 72 GGTRALVNDPALLDFIRRQAARAKYVTSVCTGA-LLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTS 150 (183)
T ss_pred cchhhhccCHHHHHHHHHhcccCCEEEEEchHH-HHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEc
Confidence 556667789999999999999999999999986 7999999999999999999999998775555 78889999999999
Q ss_pred CChhhHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375 83 RGPCTTMEFAVALVEQLYGKERADEVSGPLVVT 115 (121)
Q Consensus 83 ~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~ 115 (121)
+|+.++++|++++|++++|++.++++++.|.++
T Consensus 151 ~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~~~~ 183 (183)
T cd03139 151 GGVSAGIDMALALVARLFGEELAQAVALLIEYD 183 (183)
T ss_pred CcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 999999999999999999999999999999864
No 2
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=99.94 E-value=4.2e-26 Score=160.79 Aligned_cols=117 Identities=50% Similarity=0.768 Sum_probs=110.0
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeE
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVV 80 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~ 80 (121)
||.+|++.|..++.+.+.+++|.+.+++|++||+||..+|+.-|++.|+++|+|+...+.|.+.|++|+++++++|||++
T Consensus 75 GG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~li 154 (247)
T KOG2764|consen 75 GGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLI 154 (247)
T ss_pred CCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCcEE
Confidence 77899999999999999999999999999999999866777778888999999999999998878999999999999999
Q ss_pred cCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccccc
Q 038375 81 TSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFI 117 (121)
Q Consensus 81 T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~ 117 (121)
|++||.++++|++.|+|++.|++.+.++.+.|.+.++
T Consensus 155 TSrGpgT~~eFal~lvEqL~GKeka~~v~~~l~l~~~ 191 (247)
T KOG2764|consen 155 TSRGPGTAFEFALKLVEQLGGKEKANEVKKPLSLLFL 191 (247)
T ss_pred eccCCCchHHHHHHHHHHhcCchhhhhhhccceeecc
Confidence 9999999999999999999999999999999988764
No 3
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.93 E-value=8.8e-26 Score=157.68 Aligned_cols=107 Identities=26% Similarity=0.321 Sum_probs=97.6
Q ss_pred CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--cccccc-CcEEecCCeEcCCC
Q 038375 8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVE-SRVPQDGKVVTSRG 84 (121)
Q Consensus 8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~-~~~v~dg~i~T~~g 84 (121)
.+..|+.+++||+++.+++++|++||+|+ ++|+++|+|+|+++|+||...+.+++. +..+.+ ..++.|||++||+|
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g 164 (195)
T cd03138 86 LLADNPALIAWLRRQHANGATVAAACTGV-FLLAEAGLLDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGG 164 (195)
T ss_pred hhhccHHHHHHHHHHHHcCCEEEEecHHH-HHHHHccCcCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEccc
Confidence 57789999999999999999999999986 799999999999999999999999875 344554 67899999999999
Q ss_pred hhhHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375 85 PCTTMEFAVALVEQLYGKERADEVSGPLVVT 115 (121)
Q Consensus 85 ~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~ 115 (121)
+.++++|++++|++++|.+.++++++.|.++
T Consensus 165 ~~~~~d~al~li~~~~G~~~a~~va~~l~~~ 195 (195)
T cd03138 165 AMAWADLALHLIERLAGPELAQLVARFLLID 195 (195)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 9999999999999999999999999988764
No 4
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.93 E-value=7.5e-26 Score=168.63 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=101.7
Q ss_pred hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--ccccccCcEEecCCeEcCC
Q 038375 6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVESRVPQDGKVVTSR 83 (121)
Q Consensus 6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~~~~v~dg~i~T~~ 83 (121)
++.....+.+..||++.+++|..++++|+| +|+||++|||+||++|+||.+.+.|++. .+...+..+++||++|||+
T Consensus 88 ~~~~~~~~~l~~~Lr~~~~~G~~l~gictG-af~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~lfviDg~~~T~a 166 (328)
T COG4977 88 PERPVNAPALLAWLRRAARRGARLGGLCTG-AFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDRLFVIDGDRITCA 166 (328)
T ss_pred cccccchHHHHHHHHHHHhcCCeEEEehHh-HHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCceEEecCCEEEcC
Confidence 444444488999999999999999999998 6899999999999999999999999887 2344456799999999999
Q ss_pred ChhhHHHHHHHHHHHhcCHHHHHHhhccccccccCC
Q 038375 84 GPCTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN 119 (121)
Q Consensus 84 g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~~ 119 (121)
|.++++||+++||++.+|.+.+.++++.+++++.+.
T Consensus 167 G~~a~iDl~L~lI~~~~G~~~a~~va~~lv~~~~R~ 202 (328)
T COG4977 167 GGTAAIDLMLALIRRDFGAALANRVARQLVVDPIRS 202 (328)
T ss_pred CchHHHHHHHHHHHHHhCHHHHHHHHHHhhhccccC
Confidence 999999999999999999999999999999998764
No 5
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=99.93 E-value=1.3e-25 Score=155.78 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=98.6
Q ss_pred cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--ccccccCcEEecCCeEcCCChh
Q 038375 9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVESRVPQDGKVVTSRGPC 86 (121)
Q Consensus 9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~~~~v~dg~i~T~~g~~ 86 (121)
+..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++. +.++.++.++.|||++|++|+.
T Consensus 78 ~~~~~~~~~~l~~~~~~~~~i~aic~g~-~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~~ 156 (185)
T cd03136 78 RAVTPALLAWLRRAARRGVALGGIDTGA-FLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGT 156 (185)
T ss_pred ccCCHHHHHHHHHHHhcCCEEEEEcHHH-HHHHHccccCCCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccHH
Confidence 6789999999999999999999999985 799999999999999999999999776 4566778899999999999999
Q ss_pred hHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375 87 TTMEFAVALVEQLYGKERADEVSGPLVVT 115 (121)
Q Consensus 87 ~~~~~a~~li~~~~~~~~a~~v~~~l~~~ 115 (121)
++++|++++|++++|++.++++++.|+++
T Consensus 157 ~~~d~~l~ii~~~~g~~~a~~va~~~~~~ 185 (185)
T cd03136 157 AALDLMLELIARDHGAALAARVAEQFLHD 185 (185)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHccC
Confidence 99999999999999999999999998864
No 6
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=99.93 E-value=4.6e-25 Score=151.98 Aligned_cols=107 Identities=54% Similarity=0.864 Sum_probs=95.2
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccccc-ccCcEEecCCe
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATT-VESRVPQDGKV 79 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~-~~~~~v~dg~i 79 (121)
||..+...+..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+.. ..+ .++.+++|||+
T Consensus 71 Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aGlL~g~~~T~~~~~~~~~~~--~~~~~~~~~v~dg~i 147 (179)
T TIGR01383 71 GGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAP-AVLLAAGVLLGKKATCYPGFKEKLLN--GNYSVNEAVVVDGNI 147 (179)
T ss_pred CCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhH-HHHHhcCCCCCCcEEECccHHHhccC--CceeCCCCEEEeCCE
Confidence 343345566789999999999999999999999985 79999999999999999998888865 355 47789999999
Q ss_pred EcCCChhhHHHHHHHHHHHhcCHHHHHHhhc
Q 038375 80 VTSRGPCTTMEFAVALVEQLYGKERADEVSG 110 (121)
Q Consensus 80 ~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~ 110 (121)
+||+|+.++++|++++|++++|++.++++++
T Consensus 148 ~T~~g~~a~~d~~l~li~~~~g~~~a~~va~ 178 (179)
T TIGR01383 148 ITSRGPGTAIEFALALVELLCGKEKAQEVAA 178 (179)
T ss_pred EECCChhhHHHHHHHHHHHhcCHHHHHHhhc
Confidence 9999999999999999999999999999986
No 7
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.92 E-value=7.3e-25 Score=152.02 Aligned_cols=111 Identities=27% Similarity=0.360 Sum_probs=98.8
Q ss_pred cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--cccccc-CcEEecCCeE
Q 038375 4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVE-SRVPQDGKVV 80 (121)
Q Consensus 4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~-~~~v~dg~i~ 80 (121)
.++..+..|+.+++||+++.+++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++. +..+.+ ..++.|||++
T Consensus 74 ~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~ 152 (187)
T cd03137 74 PDVDGRPPPPALLAALRRAAARGARVASVCTGA-FVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVW 152 (187)
T ss_pred cccccccCCHHHHHHHHHHHhcCCEEEEECHHH-HHHHHccCcCCCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEE
Confidence 445557789999999999999999999999986 799999999999999999999999875 344544 4578899999
Q ss_pred cCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccc
Q 038375 81 TSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVT 115 (121)
Q Consensus 81 T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~ 115 (121)
||+|+.+++++++++|++++|++.++++++.|.++
T Consensus 153 Ta~g~~~~~d~~l~li~~~~g~~~a~~~a~~l~~~ 187 (187)
T cd03137 153 TSAGVTAGIDLCLHLVREDLGAAVANRVARRLVVP 187 (187)
T ss_pred EcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhccC
Confidence 99999999999999999999999999999988753
No 8
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.90 E-value=7.1e-23 Score=143.34 Aligned_cols=115 Identities=32% Similarity=0.559 Sum_probs=100.2
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecC--C
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDG--K 78 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg--~ 78 (121)
||..++..+..++.+++||+++++++++|++||+|+.++|+.+|+++|+++|+++...+.+.. .++.++++++|+ |
T Consensus 74 GG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~--~~~~~~~~v~d~~~~ 151 (196)
T PRK11574 74 GGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPA--EQWQDKRVVWDARVN 151 (196)
T ss_pred CCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhccc--CcccCCCEEEeCCcc
Confidence 444455667788899999999999999999999997546777999999999998887776643 567788888886 9
Q ss_pred eEcCCChhhHHHHHHHHHHHhcCHHHHHHhhcccccccc
Q 038375 79 VVTSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFI 117 (121)
Q Consensus 79 i~T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~ 117 (121)
++||+|++++++|++++|++++|.+.++++++.|++++.
T Consensus 152 iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~~~~~~ 190 (196)
T PRK11574 152 LLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAAG 190 (196)
T ss_pred EEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhhccCcc
Confidence 999999999999999999999999999999999998874
No 9
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.90 E-value=3e-23 Score=141.48 Aligned_cols=95 Identities=31% Similarity=0.453 Sum_probs=86.8
Q ss_pred cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccccccc-CcEEecCCeEcC
Q 038375 4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVE-SRVPQDGKVVTS 82 (121)
Q Consensus 4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~-~~~v~dg~i~T~ 82 (121)
.++..+..++.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.+..+++ +.+++|||+|||
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~ 148 (166)
T TIGR01382 70 RAPEYLRLNNKAVRLVREFVEKGKPVAAICHGP-QLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTS 148 (166)
T ss_pred CCHHHhccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEe
Confidence 456666678999999999999999999999986 699999999999999999999999877778888 689999999999
Q ss_pred CChhhHHHHHHHHHHHh
Q 038375 83 RGPCTTMEFAVALVEQL 99 (121)
Q Consensus 83 ~g~~~~~~~a~~li~~~ 99 (121)
+|+.++.+|+.++++.+
T Consensus 149 ~~~~~~~~fa~~~~~~l 165 (166)
T TIGR01382 149 RVPDDLPAFNREFLKLL 165 (166)
T ss_pred CCcccHHHHHHHHHHHh
Confidence 99999999999999876
No 10
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.90 E-value=4e-23 Score=138.95 Aligned_cols=98 Identities=42% Similarity=0.651 Sum_probs=86.8
Q ss_pred CCccchhCcccC-HHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccccccc--CcEEecC
Q 038375 1 GGVPGATNLKES-EVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVE--SRVPQDG 77 (121)
Q Consensus 1 gG~~g~~~l~~~-~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~--~~~v~dg 77 (121)
||..+++.+..+ +.+++++++|++++|+|++||+|| .+|+.+|+|+|+++|+++...+.++..|..+.+ ..+++|+
T Consensus 45 GG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~-~~L~~~gll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~ 123 (147)
T PF01965_consen 45 GGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGP-AVLAAAGLLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDG 123 (147)
T ss_dssp -BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCH-HHHHHTTTTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEET
T ss_pred CCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCc-chhhccCccCCceeecCccHHHHHHHCCCEEEecCCCeEEEC
Confidence 566668889855 999999999999999999999998 599999999999999999998878777888877 7899999
Q ss_pred -CeEcCCChhhHHHHHHHHHHHh
Q 038375 78 -KVVTSRGPCTTMEFAVALVEQL 99 (121)
Q Consensus 78 -~i~T~~g~~~~~~~a~~li~~~ 99 (121)
|+||++++.++.+|++++++.|
T Consensus 124 ~nlIT~~~~~~~~~fa~~ive~L 146 (147)
T PF01965_consen 124 GNLITGRGPGSAIEFALAIVEAL 146 (147)
T ss_dssp TTEEEESSGGGHHHHHHHHHHHH
T ss_pred CeEEECCChhhHHHHHHHHHHHc
Confidence 9999999999999999999987
No 11
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.89 E-value=4.7e-23 Score=139.72 Aligned_cols=92 Identities=49% Similarity=0.809 Sum_probs=83.7
Q ss_pred chhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCCC
Q 038375 5 GATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRG 84 (121)
Q Consensus 5 g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~g 84 (121)
++..+..|+.+++||+++++++++|+++|+|+ ++|+++|+|+||++|+||...+.+ .+.++.++.+++|||++||+|
T Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~-~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~~~v~dg~l~T~~g 148 (163)
T cd03135 72 GAQNLADNEKLIKLLKEFNAKGKLIAAICAAP-AVLAKAGLLKGKKATCYPGFEDKL--GGANYVDEPVVVDGNIITSRG 148 (163)
T ss_pred hHHHHHhCHHHHHHHHHHHHcCCEEEEEchhH-HHHHHcCCcCCCeEEECchHHHhc--CCCeEecCCEEEECCEEEcCC
Confidence 56667789999999999999999999999985 799999999999999999888777 247778889999999999999
Q ss_pred hhhHHHHHHHHHHHh
Q 038375 85 PCTTMEFAVALVEQL 99 (121)
Q Consensus 85 ~~~~~~~a~~li~~~ 99 (121)
+.++.+|++++|+++
T Consensus 149 ~~s~~d~al~li~~l 163 (163)
T cd03135 149 PGTAFEFALKIVEAL 163 (163)
T ss_pred cccHHHHHHHHHHhC
Confidence 999999999999874
No 12
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.89 E-value=1.1e-22 Score=138.56 Aligned_cols=93 Identities=32% Similarity=0.464 Sum_probs=85.5
Q ss_pred cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCC
Q 038375 4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSR 83 (121)
Q Consensus 4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~ 83 (121)
+++..+..|+.+++||+++++++++|+++|+|+ ++|+++|+|+|+++|+||...+.+++.+.++.++.+++|||+|||+
T Consensus 72 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~ 150 (165)
T cd03134 72 TNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGP-WVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSR 150 (165)
T ss_pred CChhhhccCHHHHHHHHHHHHcCCeEEEEchHH-HHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEec
Confidence 456667789999999999999999999999986 6999999999999999999999998766778888999999999999
Q ss_pred ChhhHHHHHHHHHH
Q 038375 84 GPCTTMEFAVALVE 97 (121)
Q Consensus 84 g~~~~~~~a~~li~ 97 (121)
|+.++++|+..+|+
T Consensus 151 ~~~~~~~f~~~~~~ 164 (165)
T cd03134 151 NPDDLPAFNRAILK 164 (165)
T ss_pred CcchHHHHHHHHHh
Confidence 99999999999986
No 13
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.88 E-value=2e-22 Score=139.42 Aligned_cols=95 Identities=28% Similarity=0.417 Sum_probs=85.8
Q ss_pred cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCC
Q 038375 4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSR 83 (121)
Q Consensus 4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~ 83 (121)
.++..+..++.+++||+++++++++|++||+|+ ++|+++|+|+||++|+||...+.+++.+..+.++++++|||+|||+
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~~v~D~~iiT~~ 164 (180)
T cd03169 86 RAPEYLRLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDGVVVDGNLVTAQ 164 (180)
T ss_pred CChhhhccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecccchHHHHHHCCCEEeeccEEEECCEEEec
Confidence 455566678999999999999999999999986 6999999999999999999999998776667788899999999999
Q ss_pred ChhhHHHHHHHHHHHh
Q 038375 84 GPCTTMEFAVALVEQL 99 (121)
Q Consensus 84 g~~~~~~~a~~li~~~ 99 (121)
|+.+..+|+.++++.+
T Consensus 165 ~~~~~~~f~~~~~~~l 180 (180)
T cd03169 165 AWPDHPAFLREFLKLL 180 (180)
T ss_pred CCchHHHHHHHHHHhC
Confidence 9999999999999864
No 14
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.88 E-value=1.9e-22 Score=144.91 Aligned_cols=98 Identities=24% Similarity=0.364 Sum_probs=84.9
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc-------CCCCCCeeecCcch----------------
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR-------GLLKGLKATCYPSF---------------- 57 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a-------Gll~g~~~t~~~~~---------------- 57 (121)
||.+++.++.+|+.++++|++|++++|+|++|||||+ +|+.+ ++++||++|+++..
T Consensus 102 GG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~~ 180 (231)
T cd03147 102 GGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNL 180 (231)
T ss_pred CCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccCC
Confidence 6767788899999999999999999999999999996 77776 89999999999865
Q ss_pred ---HHhhccccccccc------CcEEecCCeEcCCChhhHHHHHHHHHHHh
Q 038375 58 ---MEQLAPACATTVE------SRVPQDGKVVTSRGPCTTMEFAVALVEQL 99 (121)
Q Consensus 58 ---~~~l~~~g~~~~~------~~~v~dg~i~T~~g~~~~~~~a~~li~~~ 99 (121)
.+.+++.|+.|++ ..+++|||+||+++|.++.+|++.+++.|
T Consensus 181 ~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 181 ESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred ccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 3445555777764 34999999999999999999999999875
No 15
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.88 E-value=6.4e-22 Score=147.76 Aligned_cols=113 Identities=25% Similarity=0.352 Sum_probs=98.6
Q ss_pred cchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccc--ccccccC-cEEecCCeE
Q 038375 4 PGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPA--CATTVES-RVPQDGKVV 80 (121)
Q Consensus 4 ~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~--g~~~~~~-~~v~dg~i~ 80 (121)
.+... ..++.+++||+++.+++++|++||+|+ ++|+++|+|+|+++|+||...+.+++. ...+.++ .++.|||++
T Consensus 85 ~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~-~~La~aGlL~~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~ii 162 (322)
T PRK09393 85 RGPDA-PVPEPLLEALRAAHARGARLCSICSGV-FVLAAAGLLDGRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQIL 162 (322)
T ss_pred Ccccc-cCCHHHHHHHHHHHHcCCEEEEEcHHH-HHHHhccCCCCCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEE
Confidence 44433 469999999999999999999999986 799999999999999999999999764 2334444 578889999
Q ss_pred cCCChhhHHHHHHHHHHHhcCHHHHHHhhccccccccC
Q 038375 81 TSRGPCTTMEFAVALVEQLYGKERADEVSGPLVVTFID 118 (121)
Q Consensus 81 T~~g~~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~ 118 (121)
||+|+.+++++++++|++.+|.+.++.+++.|++++.+
T Consensus 163 T~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~~~~~ 200 (322)
T PRK09393 163 TSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVVPPHR 200 (322)
T ss_pred ecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCcCC
Confidence 99999999999999999999999999999999887654
No 16
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.87 E-value=6e-22 Score=135.23 Aligned_cols=91 Identities=29% Similarity=0.439 Sum_probs=77.6
Q ss_pred hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhccccc--ccc-cCcEEecCCeEcC
Q 038375 6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACA--TTV-ESRVPQDGKVVTS 82 (121)
Q Consensus 6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~--~~~-~~~~v~dg~i~T~ 82 (121)
......++.+++||+++.+++++|+++|+| +++|+++|+|+|+++|+||...+.+++... .+. ++.++.|||++||
T Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta 151 (166)
T PF13278_consen 73 FDAAAKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITA 151 (166)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEE
T ss_pred chhcccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEe
Confidence 455667899999999999999999999998 589999999999999999999999988732 233 6789999999999
Q ss_pred CChhhHHHHHHHHHH
Q 038375 83 RGPCTTMEFAVALVE 97 (121)
Q Consensus 83 ~g~~~~~~~a~~li~ 97 (121)
+|+.+++|+++++||
T Consensus 152 ~g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 152 GGPTAAIDLALYLIE 166 (166)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhC
Confidence 999999999999996
No 17
>PRK04155 chaperone protein HchA; Provisional
Probab=99.87 E-value=7.2e-22 Score=145.66 Aligned_cols=100 Identities=26% Similarity=0.396 Sum_probs=88.7
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcC------CCCCCeeecCcch-----------------
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRG------LLKGLKATCYPSF----------------- 57 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aG------ll~g~~~t~~~~~----------------- 57 (121)
||..++..|..|+.++++|+++++++|+|++|||||+ +|..++ +++||++|+++..
T Consensus 155 GG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~~~ 233 (287)
T PRK04155 155 GGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHLTW 233 (287)
T ss_pred CCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccccccc
Confidence 6777789999999999999999999999999999996 677788 9999999999865
Q ss_pred --HHhhccccccccc----CcEEecCCeEcCCChhhHHHHHHHHHHHhcC
Q 038375 58 --MEQLAPACATTVE----SRVPQDGKVVTSRGPCTTMEFAVALVEQLYG 101 (121)
Q Consensus 58 --~~~l~~~g~~~~~----~~~v~dg~i~T~~g~~~~~~~a~~li~~~~~ 101 (121)
.+.|++.|+++++ ..+|+|||+||+++|.++.+|++.+++.+..
T Consensus 234 ~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~ 283 (287)
T PRK04155 234 LFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLA 283 (287)
T ss_pred hHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHH
Confidence 4556666878877 5799999999999999999999999998863
No 18
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.85 E-value=3.6e-21 Score=137.45 Aligned_cols=98 Identities=28% Similarity=0.421 Sum_probs=82.8
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcC------CCCCCeeecCcchHHh--------------
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRG------LLKGLKATCYPSFMEQ-------------- 60 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aG------ll~g~~~t~~~~~~~~-------------- 60 (121)
||......+..|+.+++||+++.+++++|++||+|+ ++|+++| +|+||++|+||...+.
T Consensus 98 GG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~ 176 (221)
T cd03141 98 GGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLED 176 (221)
T ss_pred CCcccccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHH
Confidence 443335568899999999999999999999999997 6899999 7999999999875443
Q ss_pred -hccccccccc-----CcEEecCCeEcCCChhhHHHHHHHHHHHh
Q 038375 61 -LAPACATTVE-----SRVPQDGKVVTSRGPCTTMEFAVALVEQL 99 (121)
Q Consensus 61 -l~~~g~~~~~-----~~~v~dg~i~T~~g~~~~~~~a~~li~~~ 99 (121)
+++.|.++.+ ..+|+|+|+||++++.++.+|++.+|+.+
T Consensus 177 ~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 177 ELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred HHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 5555666654 45999999999999999999999999864
No 19
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.85 E-value=5.3e-21 Score=137.52 Aligned_cols=99 Identities=19% Similarity=0.371 Sum_probs=84.6
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCC------CCCCeeecCcchHHh--------------
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGL------LKGLKATCYPSFMEQ-------------- 60 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGl------l~g~~~t~~~~~~~~-------------- 60 (121)
||..++.++..|+.+++++++|++++|+|++|||||+ +|..+++ ++||++|+++...+.
T Consensus 104 GG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~p 182 (232)
T cd03148 104 GGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIGYMPGHLT 182 (232)
T ss_pred CCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccccccCccc
Confidence 7777889999999999999999999999999999996 6777888 999999999876553
Q ss_pred ------hcccccccccC----cEEecCCeEcCCChhhHHHHHHHHHHHhc
Q 038375 61 ------LAPACATTVES----RVPQDGKVVTSRGPCTTMEFAVALVEQLY 100 (121)
Q Consensus 61 ------l~~~g~~~~~~----~~v~dg~i~T~~g~~~~~~~a~~li~~~~ 100 (121)
+++.|+.+... .+|+|||+||+++|.|+..++..+|+.+.
T Consensus 183 f~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~ 232 (232)
T cd03148 183 WLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML 232 (232)
T ss_pred ccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence 22335555443 78999999999999999999999998763
No 20
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.84 E-value=2.1e-20 Score=128.37 Aligned_cols=89 Identities=29% Similarity=0.457 Sum_probs=76.1
Q ss_pred ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcc-hHHhhccc---ccccccCcEEecCCeEcCCCh
Q 038375 10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPS-FMEQLAPA---CATTVESRVPQDGKVVTSRGP 85 (121)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~-~~~~l~~~---g~~~~~~~~v~dg~i~T~~g~ 85 (121)
..++.+++||+++.+++++|+++|+|+ ++|+++|+|+||++|+||. ..+.++.. +..+.++.+++|||+|||+|+
T Consensus 75 ~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~ 153 (170)
T cd03140 75 PEAPDLAGLVRQALKQGKPVAAICGAT-LALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGT 153 (170)
T ss_pred CCcHHHHHHHHHHHHcCCEEEEEChHH-HHHHHCCCcCCCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCc
Confidence 378999999999999999999999986 6999999999999999985 55666542 245567889999999999875
Q ss_pred hhHHHHHHHHHHHhc
Q 038375 86 CTTMEFAVALVEQLY 100 (121)
Q Consensus 86 ~~~~~~a~~li~~~~ 100 (121)
+ +++|++.+|+.+.
T Consensus 154 a-~~d~al~~i~~l~ 167 (170)
T cd03140 154 A-PVEFAAEILRALD 167 (170)
T ss_pred C-HHHHHHHHHHHcC
Confidence 4 7999999999764
No 21
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.80 E-value=2.8e-19 Score=124.36 Aligned_cols=102 Identities=38% Similarity=0.595 Sum_probs=93.1
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcC-CCCCCeeecCcchHHhhcc----cccccccC----
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRG-LLKGLKATCYPSFMEQLAP----ACATTVES---- 71 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aG-ll~g~~~t~~~~~~~~l~~----~g~~~~~~---- 71 (121)
||..++..++.++.+++|++++++++|+|++|||||+ +|+.+| +++|+++|+++...+.... .|.++++.
T Consensus 74 GG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~ 152 (188)
T COG0693 74 GGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWT 152 (188)
T ss_pred CCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccCCceEeecCchHHHHHhHHHhcCceEeccccCc
Confidence 5557888888889999999999999999999999985 899999 9999999999998888877 57888887
Q ss_pred -cEEecCC-eEcCCChhhHHHHHHHHHHHhcCHH
Q 038375 72 -RVPQDGK-VVTSRGPCTTMEFAVALVEQLYGKE 103 (121)
Q Consensus 72 -~~v~dg~-i~T~~g~~~~~~~a~~li~~~~~~~ 103 (121)
.+++||+ ++|+.++.+..+|+..+++.+.+..
T Consensus 153 ~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 153 DEVVVDGNALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred CCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence 8999999 9999999999999999999988753
No 22
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.66 E-value=3.1e-16 Score=111.43 Aligned_cols=83 Identities=22% Similarity=0.226 Sum_probs=68.1
Q ss_pred ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCc--chHHhhcccccccccC---cEEec--CCeEcC
Q 038375 10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYP--SFMEQLAPACATTVES---RVPQD--GKVVTS 82 (121)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~--~~~~~l~~~g~~~~~~---~~v~d--g~i~T~ 82 (121)
+.|+.+++++++|++++|+|++||+||+ +|+.+.. +||++|+++ ..++.+++.|+.|++. .+++| ||+|||
T Consensus 109 ~~~~~l~~lv~~f~~~gK~VaAIChgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d~~~~~vvvd~dg~lITs 186 (213)
T cd03133 109 TVNPEVERLVREFHQAGKPIGAICIAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVNCPVEEIVVDEKNKVVTT 186 (213)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEECHHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEeCCCCeEEEECCCCEEeC
Confidence 3489999999999999999999999986 7787655 999999999 8888898778888863 67776 799999
Q ss_pred CChh---hHHHHHHH
Q 038375 83 RGPC---TTMEFAVA 94 (121)
Q Consensus 83 ~g~~---~~~~~a~~ 94 (121)
+.+. +..+.++.
T Consensus 187 ~~~~~~~~~~~~~~~ 201 (213)
T cd03133 187 PAYMLADSIHEIADG 201 (213)
T ss_pred ccccCCCCHHHHHHh
Confidence 8863 44554443
No 23
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.64 E-value=5.9e-16 Score=110.39 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=66.5
Q ss_pred hCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecC--cchHHhhcccccccccC---cEEec--CCe
Q 038375 7 TNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCY--PSFMEQLAPACATTVES---RVPQD--GKV 79 (121)
Q Consensus 7 ~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~--~~~~~~l~~~g~~~~~~---~~v~d--g~i 79 (121)
+.++.|+.+++++++|++++|+|++|||||+ +|+.+.. +||++|++ +...+.+++.|++|++. .+|+| +|+
T Consensus 109 ~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~-iL~~~~~-~gr~~T~~~~~~~~~~~~~aGa~~vd~~~~~vvvD~~~~l 186 (217)
T PRK11780 109 AECTVNPDVKALVRAFHQAGKPIGFICIAPA-MLPKILG-AGVKLTIGNDEDTAAAIEKMGGEHVDCPVDDIVVDEENKV 186 (217)
T ss_pred hhcccCHHHHHHHHHHHHCCCEEEEECHHHH-HHHHHhc-cCcEEEecCChhhHHHHHHCCCEEEcCCCCeEEEECCCCE
Confidence 3446699999999999999999999999996 6777522 89999999 99999998889999885 78888 789
Q ss_pred EcCCCh
Q 038375 80 VTSRGP 85 (121)
Q Consensus 80 ~T~~g~ 85 (121)
||+...
T Consensus 187 vt~~~~ 192 (217)
T PRK11780 187 VTTPAY 192 (217)
T ss_pred EeCCcc
Confidence 999974
No 24
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.75 E-value=3.9e-08 Score=65.33 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=37.7
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCC
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLL 46 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll 46 (121)
||......+..++.+++||+++++++++|+++|+|+ ++|+++|+|
T Consensus 70 Gg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~-~~La~aGll 114 (142)
T cd03132 70 GGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS-DLLEAAGIP 114 (142)
T ss_pred CCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH-HHHHHcCCC
Confidence 343334455788999999999999999999999986 699999997
No 25
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.58 E-value=9.6e-08 Score=69.03 Aligned_cols=66 Identities=26% Similarity=0.148 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCC
Q 038375 15 LESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSR 83 (121)
Q Consensus 15 l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~ 83 (121)
+.++|+++.++++++.+||.|.+ +|+++|+|.|+. +.++......... ..+++..++.|++++|+.
T Consensus 71 ~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~g~~-~~~~~~~~~~~~~-~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 71 LMEEVKEFAERGGLVLGICNGFQ-ILVELGLLPGAL-IRNKGLKFICRWQ-NRFVTLRVENNDSPFTKG 136 (238)
T ss_pred HHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCcccc-ccCCCCceecccc-CceEEEEEcCCCCceecC
Confidence 88999999999999999999975 899999999866 5555433222211 134555566677777765
No 26
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.19 E-value=3.4e-06 Score=60.30 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=35.3
Q ss_pred ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCe
Q 038375 10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLK 50 (121)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~ 50 (121)
..++.+++||+++.++++++++||+|. .+|+++|||+|+-
T Consensus 63 ~~~~~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~GLL~g~l 102 (219)
T PRK03619 63 AAFSPIMKAVKEFAEKGKPVLGICNGF-QILTEAGLLPGAL 102 (219)
T ss_pred hhchHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCeE
Confidence 346789999999999999999999986 5999999999853
No 27
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.95 E-value=4.8e-05 Score=52.06 Aligned_cols=83 Identities=27% Similarity=0.330 Sum_probs=60.5
Q ss_pred CCccchhCccc----------CHHHHHHHHHHHhCCCeEEEechhHHHHHHh-cCCCCCCeeecCcchHHhhcccccccc
Q 038375 1 GGVPGATNLKE----------SEVLESIVKKQASDGRLNAVICASPAEALGS-RGLLKGLKATCYPSFMEQLAPACATTV 69 (121)
Q Consensus 1 gG~~g~~~l~~----------~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~-aGll~g~~~t~~~~~~~~l~~~g~~~~ 69 (121)
||+..+++|.+ +|.+..+.+.|++.||+++-+|.+|+ +|.. -|.--.-++.......+.++..|...+
T Consensus 93 GGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pki~g~~~~~TIGnD~dTa~a~~~mG~eHv 171 (217)
T COG3155 93 GGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPKIFGFPLRLTIGNDIDTAEALEEMGAEHV 171 (217)
T ss_pred CccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHHHcCCceeEEecCCccHHHHHHHhCcccC
Confidence 67777777654 89999999999999999999999997 5655 233212244455677888887787776
Q ss_pred c---CcEEec--CCeEcCCC
Q 038375 70 E---SRVPQD--GKVVTSRG 84 (121)
Q Consensus 70 ~---~~~v~d--g~i~T~~g 84 (121)
+ ..+|+| ++++|...
T Consensus 172 ~cPvd~iV~D~~~KvvtTPA 191 (217)
T COG3155 172 PCPVDDIVVDEDNKVVTTPA 191 (217)
T ss_pred CCCccceeecCCCceecChH
Confidence 5 346665 78888654
No 28
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=97.79 E-value=5.2e-05 Score=54.42 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCC
Q 038375 10 KESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGL 49 (121)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~ 49 (121)
..++.+.++|+++.+++++|.+||.|. .+|+.+|+|+|.
T Consensus 62 ~~~~~~~~~l~~~~~~g~pvlgIC~G~-QlLa~~GlL~G~ 100 (227)
T TIGR01737 62 AAASPIMQEVREFAEKGVPVLGICNGF-QILVEAGLLPGA 100 (227)
T ss_pred hcchHHHHHHHHHHHcCCEEEEECHHH-HHHHHcCCCCCc
Confidence 345678899999999999999999986 589999999874
No 29
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=97.70 E-value=8e-05 Score=54.70 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCC
Q 038375 15 LESIVKKQASDGRLNAVICASPAEALGSRGLLKG 48 (121)
Q Consensus 15 l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g 48 (121)
+.+.|+++.++++++.+||.|.+ +|+++|+|.|
T Consensus 78 l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLpg 110 (261)
T PRK01175 78 LRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLPG 110 (261)
T ss_pred HHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCCC
Confidence 45788999999999999999976 8999999987
No 30
>PRK11249 katE hydroperoxidase II; Provisional
Probab=97.66 E-value=6.8e-05 Score=62.00 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=40.6
Q ss_pred CCccchhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCC
Q 038375 1 GGVPGATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLK 47 (121)
Q Consensus 1 gG~~g~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~ 47 (121)
||..++..+..++.++.||+++++++|+|+++|+|+ .+|+++||.+
T Consensus 666 GG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~-~LLaaAGL~~ 711 (752)
T PRK11249 666 GGKANIADLADNGDARYYLLEAYKHLKPIALAGDAR-KLKAALKLPD 711 (752)
T ss_pred CCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccH-HHHHhcCCCC
Confidence 455567888899999999999999999999999985 6999999954
No 31
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=97.17 E-value=0.00029 Score=49.01 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=30.8
Q ss_pred CCccchh--CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 1 GGVPGAT--NLKESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 1 gG~~g~~--~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
|| .+.. ++.++..+.+.|+++.+ ++++.+||.|++ +|++
T Consensus 47 GG-~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~ 87 (179)
T PRK13526 47 GG-ESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSK 87 (179)
T ss_pred CC-hHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHc
Confidence 44 4455 66677789999999875 789999999985 7877
No 32
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=97.16 E-value=0.00049 Score=48.41 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.8
Q ss_pred hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
++.|.+++.+.+.|+++.+++++|.+||.|.+ +|.+
T Consensus 55 ~~~L~~~~~~~~~i~~~~~~g~pilgICgG~q-lL~~ 90 (198)
T cd03130 55 AEELSANQSMRESIRAFAESGGPIYAECGGLM-YLGE 90 (198)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCEEEEcccHH-HHHH
Confidence 45676778899999999999999999999975 6775
No 33
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=96.84 E-value=0.00093 Score=46.56 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=29.4
Q ss_pred CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
++.++..+.+.|+++.++++++.+||.|.+ +|++.
T Consensus 52 ~l~~~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~ 86 (184)
T TIGR03800 52 RLLDKYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE 86 (184)
T ss_pred HHHHhccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence 444566788999999999999999999975 78876
No 34
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0062 Score=43.79 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCC
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSRGLLKG 48 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g 48 (121)
+.+.+-+++++++++++.+||+|-+ +|.++|||.|
T Consensus 68 ~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG 102 (231)
T COG0047 68 APVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG 102 (231)
T ss_pred HHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence 6788889999999999999999976 7889999988
No 35
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.43 E-value=0.0034 Score=43.84 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=27.6
Q ss_pred cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 9 LKESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
+..+..+.++++++.++++++.+||.|.+ +|+.
T Consensus 55 ~~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~ 87 (189)
T PRK13525 55 LLRDFGLLEPLREFIASGLPVFGTCAGMI-LLAK 87 (189)
T ss_pred HHHhccHHHHHHHHHHCCCeEEEECHHHH-HHHh
Confidence 44556678999999999999999999976 7776
No 36
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.36 E-value=0.0038 Score=49.09 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=33.8
Q ss_pred CCccc--hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 1 GGVPG--ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 1 gG~~g--~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
||.+. ...+..+..+.+.|+++.++|++|.++|.|.+ +|++
T Consensus 295 GG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~ 337 (451)
T PRK01077 295 GGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLM-YLGE 337 (451)
T ss_pred CCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHh
Confidence 45444 46677888999999999999999999999975 7775
No 37
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.28 E-value=0.0041 Score=43.72 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=28.5
Q ss_pred cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+...+.+.++|+++.++++++.+||.|.+ +|+++
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~ 87 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQ-LLFES 87 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 44556788999999999999999999976 78864
No 38
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=96.25 E-value=0.0051 Score=43.17 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=28.3
Q ss_pred cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+..+..+.++|+++.++++++.+||.|.+ +|+.+
T Consensus 60 ~~~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~ 93 (200)
T PRK13527 60 LMKREGILDEIKEKIEEGLPILGTCAGLI-LLAKE 93 (200)
T ss_pred HHhhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence 33555689999999999999999999975 77775
No 39
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=95.98 E-value=0.016 Score=34.85 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=25.7
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHH
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEAL 40 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lL 40 (121)
.++.++++++++.+++++++++|.|.. ++
T Consensus 64 ~~~~~~~~i~~~~~~~~~i~~~c~g~~-~l 92 (115)
T cd01653 64 RDEALLALLREAAAAGKPILGICLGAQ-LL 92 (115)
T ss_pred cCHHHHHHHHHHHHcCCEEEEECchhH-hH
Confidence 478999999999999999999999864 55
No 40
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=95.97 E-value=0.0045 Score=45.48 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=32.6
Q ss_pred cccCHHHHHHHHHHHhC-CCeEEEechhHHHHHHhcCCCCC
Q 038375 9 LKESEVLESIVKKQASD-GRLNAVICASPAEALGSRGLLKG 48 (121)
Q Consensus 9 l~~~~~l~~~l~~~~~~-~~~i~aic~g~~~lLa~aGll~g 48 (121)
++.++.+.+.|++|.++ ++++.+||+|- -+|.++|||.+
T Consensus 72 ~~~~~~~~~~i~~f~~~~g~~vLGIcNGf-QiL~~~Gllp~ 111 (259)
T PF13507_consen 72 LLFNSPLMDAIREFLERPGGFVLGICNGF-QILVELGLLPG 111 (259)
T ss_dssp HCCSCCCHHHHHHHHHCTT-EEEEECHHH-HHHCCCCCSTT
T ss_pred hhccHHHHHHHHHHHhcCCCeEEEEchHh-HHHHHhCcCCC
Confidence 33467778999999998 99999999985 59999999988
No 41
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=95.90 E-value=0.0073 Score=42.29 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+..+.+.|+++.++++++.+||.|.+ +|++.
T Consensus 58 ~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~ 88 (194)
T cd01750 58 KRGLAEAIKNYARAGGPVLGICGGYQ-MLGKY 88 (194)
T ss_pred HcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhh
Confidence 45688999999999999999999975 67654
No 42
>PRK08250 glutamine amidotransferase; Provisional
Probab=95.65 E-value=0.02 Score=41.34 Aligned_cols=30 Identities=10% Similarity=0.340 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
...++||+++.+.++++.+||.|.+ +|+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 100 (235)
T PRK08250 71 KAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA 100 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence 3668999999999999999999986 67764
No 43
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=95.58 E-value=0.018 Score=32.96 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.5
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhH
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASP 36 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~ 36 (121)
.++.+++++.++..++++++++|.|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~~~~~g~ 89 (92)
T cd03128 64 WDEALLALLREAAAAGKPVLGICLGA 89 (92)
T ss_pred cCHHHHHHHHHHHHcCCEEEEEeccc
Confidence 47889999999999999999999984
No 44
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=95.32 E-value=0.027 Score=38.85 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.+.+.++|+++.++++++.+||.|.+ +|+.
T Consensus 67 ~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~ 96 (188)
T cd01741 67 LKKLKELIRQALAAGKPVLGICLGHQ-LLAR 96 (188)
T ss_pred HHHHHHHHHHHHHCCCCEEEECccHH-HHHH
Confidence 36789999999999999999999976 6665
No 45
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=95.12 E-value=0.014 Score=41.03 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+.+.++|+++.++++++.+||.|.+ +|+..
T Consensus 59 ~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~ 88 (205)
T PRK13141 59 RGLDEVIKEAVASGKPLLGICLGMQ-LLFES 88 (205)
T ss_pred cChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence 3578899999999999999999975 78875
No 46
>PRK07053 glutamine amidotransferase; Provisional
Probab=95.12 E-value=0.038 Score=39.92 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
..++++|+++.+.++++.+||.|.+ +|+.+
T Consensus 70 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 99 (234)
T PRK07053 70 APEIALLRQRLAAGLPTLGICLGAQ-LIARA 99 (234)
T ss_pred HHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 4788999999999999999999976 67764
No 47
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=95.11 E-value=0.051 Score=37.41 Aligned_cols=31 Identities=16% Similarity=-0.005 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
++...+++++++.++++++.+||.|.+ +|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~PvlGIC~G~Q-~l~~ 84 (178)
T cd01744 54 LLDEAIKTVRKLLGKKIPIFGICLGHQ-LLAL 84 (178)
T ss_pred HhHHHHHHHHHHHhCCCCEEEECHHHH-HHHH
Confidence 346788899999999999999999976 5665
No 48
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=94.47 E-value=0.032 Score=38.66 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.+..+.++|+++.++++++.+||.|.+ +|+.
T Consensus 54 ~~~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~ 84 (183)
T cd01749 54 RRTGLLDPLREFIRAGKPVFGTCAGLI-LLAK 84 (183)
T ss_pred HhCCHHHHHHHHHHcCCeEEEECHHHH-HHHH
Confidence 455678899999999999999999965 7775
No 49
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=94.46 E-value=0.04 Score=37.27 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=29.1
Q ss_pred CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
.+.++..+.+.|+++.++|.+|.++|.|- .+|.+.
T Consensus 24 ~l~~~~~~~~~I~~~~~~G~pi~aeCGG~-~~Lg~~ 58 (158)
T PF07685_consen 24 ELSRNRGLKEAIREAAEAGGPIYAECGGY-QYLGES 58 (158)
T ss_pred HHHHHhCHHHHHHHHHHcCCcEEEEchHH-HHHHHH
Confidence 45567889999999999999999999985 466653
No 50
>PRK05665 amidotransferase; Provisional
Probab=94.09 E-value=0.081 Score=38.39 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
..+.+||++..++++++.+||-|-+ +|+.+
T Consensus 78 ~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A 107 (240)
T PRK05665 78 QTLKTYLLKLYERGDKLLGVCFGHQ-LLALL 107 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence 5788999999999999999999976 77764
No 51
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=93.43 E-value=0.16 Score=35.29 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
+....++++++.+.++++.+||.|.+ +|+.
T Consensus 86 ~~~~~~~~~~~~~~~~PilgiC~G~Q-~l~~ 115 (189)
T cd01745 86 DAFELALLRAALERGKPILGICRGMQ-LLNV 115 (189)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcchHH-HHHH
Confidence 34567899999999999999999976 5554
No 52
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=93.42 E-value=0.1 Score=45.91 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=35.2
Q ss_pred CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCC
Q 038375 8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKG 48 (121)
Q Consensus 8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g 48 (121)
.+..|+.+.+-+++|+++++++.+||+|-+ +|.+.|||.+
T Consensus 1056 a~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~ 1095 (1239)
T TIGR01857 1056 AILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPY 1095 (1239)
T ss_pred HHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcC
Confidence 455688999999999999999999999865 8999999975
No 53
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=93.32 E-value=0.085 Score=38.60 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=28.2
Q ss_pred hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+..+..+..+.+.|+++.++|+++.++|.|.+ +|++.
T Consensus 52 ~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gmq-lLa~~ 88 (248)
T PLN02832 52 MAKLAERHNLFPALREFVKSGKPVWGTCAGLI-FLAER 88 (248)
T ss_pred HHHHHhhcchHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence 33454444688899999889999999999864 77653
No 54
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=93.30 E-value=0.15 Score=35.07 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
-+..+.++++..++++++.+||-|-+ +|+.
T Consensus 58 ~~~~~~~i~~~~~~~~PilGIC~G~Q-~la~ 87 (192)
T PF00117_consen 58 IEGLIELIREARERKIPILGICLGHQ-ILAH 87 (192)
T ss_dssp HHHHHHHHHHHHHTTSEEEEETHHHH-HHHH
T ss_pred ccccccccccccccceEEEEEeehhh-hhHH
Confidence 57788899999999999999999976 6665
No 55
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=93.24 E-value=0.057 Score=37.87 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=28.3
Q ss_pred hhCcccCHHHHHHHHHHHhCC-CeEEEechhHHHHHHh
Q 038375 6 ATNLKESEVLESIVKKQASDG-RLNAVICASPAEALGS 42 (121)
Q Consensus 6 ~~~l~~~~~l~~~l~~~~~~~-~~i~aic~g~~~lLa~ 42 (121)
+..+.+...+.+-|+++..+| +++.+.|.| ..+|++
T Consensus 47 i~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAG-lIlLa~ 83 (188)
T PF01174_consen 47 IGKLLRRYGLFEPLREFIRSGSKPVWGTCAG-LILLAK 83 (188)
T ss_dssp HHHHHHHTTHHHHHHHHHHTT--EEEEETHH-HHHHEE
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCceeehhHH-HHHhhh
Confidence 335666678899999999998 999999998 457775
No 56
>PRK09065 glutamine amidotransferase; Provisional
Probab=93.08 E-value=0.15 Score=36.85 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
..+.+||++..+.++++.+||-|-+ +|+.+
T Consensus 75 ~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 104 (237)
T PRK09065 75 ERTADWLRQAAAAGMPLLGICYGHQ-LLAHA 104 (237)
T ss_pred HHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence 5678999999999999999999976 67753
No 57
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=92.78 E-value=0.1 Score=36.45 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=26.8
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
.++.+.++++++.++++++.+||.|.+ +|+.+
T Consensus 56 ~~~~~~~~i~~~~~~~~pilGiC~G~q-~l~~~ 87 (198)
T cd01748 56 RERGLIEALKEAIASGKPFLGICLGMQ-LLFES 87 (198)
T ss_pred HHcChHHHHHHHHHCCCcEEEECHHHH-Hhccc
Confidence 344578999999999999999999965 78876
No 58
>PRK06490 glutamine amidotransferase; Provisional
Probab=92.61 E-value=0.21 Score=36.14 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
..+++||++..+.++++.+||-|-+ +|+.+
T Consensus 73 ~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a 102 (239)
T PRK06490 73 RREIDWISVPLKENKPFLGICLGAQ-MLARH 102 (239)
T ss_pred HHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 3577999999999999999999976 77764
No 59
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=92.52 E-value=0.19 Score=34.88 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
.+.+.++|++ .+.++++.+||-|-+ +|+.+
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~ 88 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF 88 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 4567788886 678999999999976 67764
No 60
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=92.37 E-value=0.16 Score=40.13 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=28.7
Q ss_pred CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.+..+..+.+.|+++.++|.+|.++|.|- .+|.+
T Consensus 303 ~l~~~~~~~~~i~~~~~~G~pv~g~CgG~-~~L~~ 336 (449)
T TIGR00379 303 ELSQNQALRDSIKTFIHQGLPIYGECGGL-MYLSQ 336 (449)
T ss_pred HHHhhhHHHHHHHHHHHcCCCEEEEcHHH-HHHHh
Confidence 45567889999999999999999999985 46765
No 61
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=91.95 E-value=0.22 Score=44.20 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=35.9
Q ss_pred hCcccCHHHHHHHHHHH-hCCCeEEEechhHHHHHHhcCCCCCC
Q 038375 7 TNLKESEVLESIVKKQA-SDGRLNAVICASPAEALGSRGLLKGL 49 (121)
Q Consensus 7 ~~l~~~~~l~~~l~~~~-~~~~~i~aic~g~~~lLa~aGll~g~ 49 (121)
..++.|+.+.+.+++|+ ++++++.+||+|-+ +|.+.|||.|.
T Consensus 1106 ~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQ-iL~~lgllPg~ 1148 (1307)
T PLN03206 1106 GSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQ-LMALLGWVPGP 1148 (1307)
T ss_pred HHHHhChHHHHHHHHHHhCCCceEEEEcHHHH-HHHHcCCCCCC
Confidence 35667899999999999 55999999999855 89999999865
No 62
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=91.76 E-value=0.15 Score=36.32 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHhc---------CCCCCC
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGSR---------GLLKGL 49 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a---------Gll~g~ 49 (121)
.+...|+++.++++++.+||-|-+ +|++. |+++|+
T Consensus 62 gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~~~~~~~~glg~~~G~ 105 (210)
T CHL00188 62 GLITPIKKWIAEGNPFIGICLGLH-LLFETSEEGKEEGLGIYKGQ 105 (210)
T ss_pred CHHHHHHHHHHcCCCEEEECHHHH-HHhhccccCCcCCccceeEE
Confidence 456778888889999999999976 67763 567765
No 63
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=91.36 E-value=0.44 Score=36.74 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
++..+++++++.++++|+.+||-|.+ +|+.
T Consensus 234 ~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~ 263 (360)
T PRK12564 234 LDYAIEMIRELLEKKIPIFGICLGHQ-LLAL 263 (360)
T ss_pred HHHHHHHHHHHHHcCCeEEEECHHHH-HHHH
Confidence 46778899999888999999999976 5654
No 64
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=91.31 E-value=0.25 Score=35.17 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
..+..+|+++..+++++.+||.|.+ +|++.
T Consensus 59 ~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~ 88 (210)
T PRK14004 59 TGLRSTIDKHVESGKPLFGICIGFQ-ILFES 88 (210)
T ss_pred cCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence 3578888888899999999999976 67663
No 65
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=90.57 E-value=0.44 Score=33.87 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
+...++++++..+++++|.+||-|.+ +|+.
T Consensus 62 ~~~~~~~i~~~~~~~~PiLGIC~G~Q-lla~ 91 (214)
T PRK07765 62 AGASIDMVRACAAAGTPLLGVCLGHQ-AIGV 91 (214)
T ss_pred cchHHHHHHHHHhCCCCEEEEccCHH-HHHH
Confidence 34566899999999999999999976 6665
No 66
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=90.08 E-value=0.45 Score=33.62 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.+....+|.+....+++|.+||-|.+ +||.
T Consensus 65 ~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~ 94 (198)
T COG0518 65 LPREKDLIKDAGVPGKPVLGICLGHQ-LLAK 94 (198)
T ss_pred chhHHHHHHHhCCCCCCEEEEChhHH-HHHH
Confidence 67889999999999999999999976 6775
No 67
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=89.92 E-value=0.43 Score=33.34 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 16 ESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 16 ~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
..+++++.+.++++.+||.|.+ +|+.+
T Consensus 61 ~~l~~~~~~~~~pvlGiC~G~Q-ll~~~ 87 (196)
T TIGR01855 61 DLFVELVVRLGKPVLGICLGMQ-LLFER 87 (196)
T ss_pred HHHHHHHHhCCCCEEEECHHHH-Hhhhc
Confidence 3444778889999999999965 88887
No 68
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=89.83 E-value=0.35 Score=34.33 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=27.2
Q ss_pred hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHH
Q 038375 6 ATNLKESEVLESIVKKQASDGRLNAVICASPAEALG 41 (121)
Q Consensus 6 ~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa 41 (121)
++.|... .+++.|++....+||+.+||-|.++++.
T Consensus 55 m~~L~~~-gl~~~i~~~~~~~kP~LGIClGMQlLfe 89 (204)
T COG0118 55 MANLRER-GLIEAIKEAVESGKPFLGICLGMQLLFE 89 (204)
T ss_pred HHHHHhc-chHHHHHHHHhcCCCEEEEeHhHHhhhh
Confidence 4445433 7899999999999999999999874444
No 69
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=89.79 E-value=0.4 Score=42.38 Aligned_cols=41 Identities=7% Similarity=-0.049 Sum_probs=35.3
Q ss_pred hhCcccCHHHHHHHHHHH-hCCCeEEEech-hHHHHHHhcCCCC
Q 038375 6 ATNLKESEVLESIVKKQA-SDGRLNAVICA-SPAEALGSRGLLK 47 (121)
Q Consensus 6 ~~~l~~~~~l~~~l~~~~-~~~~~i~aic~-g~~~lLa~aGll~ 47 (121)
+..++.|+.+.+.+++|+ ++++++.+||+ |-+ +|.+.|++.
T Consensus 996 a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l~ 1038 (1202)
T TIGR01739 996 AAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIVG 1038 (1202)
T ss_pred HHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCCc
Confidence 456677999999999999 55999999999 965 899999984
No 70
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=89.53 E-value=0.43 Score=33.33 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
.+.++|+++.+.++++.+||.|.+ +|+.+
T Consensus 60 ~~~~~i~~~~~~~~PvlGiC~G~Q-ll~~~ 88 (199)
T PRK13181 60 GLDEALKEHVEKKQPVLGICLGMQ-LLFES 88 (199)
T ss_pred ChHHHHHHHHHCCCCEEEECHhHH-Hhhhh
Confidence 467888888899999999999976 77775
No 71
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=88.98 E-value=0.31 Score=34.22 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=28.5
Q ss_pred hCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 7 TNLKESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 7 ~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
..|.....+.+-|+++..+|+|+.+.|.|. .+|++
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGl-IlLak 87 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGL-ILLAK 87 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhh-hhhhh
Confidence 355566678889999999999999999984 57775
No 72
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=88.75 E-value=0.5 Score=32.60 Aligned_cols=28 Identities=14% Similarity=0.017 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 15 LESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 15 l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
...++++..++++++.+||-|-+ +|+.+
T Consensus 59 ~~~~i~~~~~~~~PilGIC~G~Q-ll~~~ 86 (188)
T TIGR00888 59 APRADEKIFELGVPVLGICYGMQ-LMAKQ 86 (188)
T ss_pred chHHHHHHHhCCCCEEEECHHHH-HHHHh
Confidence 46788888899999999999976 67654
No 73
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=88.65 E-value=0.55 Score=38.10 Aligned_cols=31 Identities=13% Similarity=0.115 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+..+.+.|+++.+.++|+.+||.|.+ +|+..
T Consensus 65 ~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~ 95 (538)
T PLN02617 65 NRGMAEALREYIQNDRPFLGICLGLQ-LLFES 95 (538)
T ss_pred HcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 33477788888899999999999976 78763
No 74
>PRK00784 cobyric acid synthase; Provisional
Probab=87.78 E-value=0.55 Score=37.46 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=26.8
Q ss_pred cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 9 LKESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
+..+..+.+.|+++.++|+++.++|.|-+ +|++
T Consensus 308 ~~~~~~l~~~i~~~~~~g~pilg~C~G~~-~L~~ 340 (488)
T PRK00784 308 WLRESGWDEAIRAHARRGGPVLGICGGYQ-MLGR 340 (488)
T ss_pred HHHHcCHHHHHHHHHHcCCeEEEECHHHH-HHhh
Confidence 33555688999999999999999999864 6765
No 75
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=87.72 E-value=0.95 Score=33.06 Aligned_cols=32 Identities=9% Similarity=0.033 Sum_probs=26.1
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+|...+++++.+.+++++|.+||-|-+ +|+.+
T Consensus 92 rD~~e~~li~~a~~~~~PILGICrG~Q-llnva 123 (254)
T PRK11366 92 RDLLSMALINAALERRIPIFAICRGLQ-ELVVA 123 (254)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 345677999999999999999999976 66653
No 76
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=87.61 E-value=0.96 Score=31.37 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
....++++++ .+++|+.+||-|-+ +|+.+
T Consensus 60 ~~~~~~i~~~-~~~~PvLGIC~G~Q-ll~~~ 88 (188)
T TIGR00566 60 GISLEAIRHF-AGKLPILGVCLGHQ-AMGQA 88 (188)
T ss_pred chhHHHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence 3347788877 67899999999976 66653
No 77
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=87.56 E-value=0.85 Score=40.73 Aligned_cols=41 Identities=10% Similarity=0.080 Sum_probs=35.0
Q ss_pred CcccCHHHHHHHHHHH-hCCCeEEEechhHHHHHH-hcCCCCCC
Q 038375 8 NLKESEVLESIVKKQA-SDGRLNAVICASPAEALG-SRGLLKGL 49 (121)
Q Consensus 8 ~l~~~~~l~~~l~~~~-~~~~~i~aic~g~~~lLa-~aGll~g~ 49 (121)
.++.|+.+.+.+++|+ ++++++.+||+|-+ +|. ..||+.|.
T Consensus 1125 ~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1125 SILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPGT 1167 (1310)
T ss_pred HHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCCC
Confidence 4667899999999999 88999999999865 677 89999763
No 78
>PHA03366 FGAM-synthase; Provisional
Probab=87.35 E-value=0.66 Score=41.40 Aligned_cols=41 Identities=5% Similarity=-0.077 Sum_probs=35.4
Q ss_pred hhCcccCHHHHHHHHHHH-hCCCeEEEech-hHHHHHHhcCCCC
Q 038375 6 ATNLKESEVLESIVKKQA-SDGRLNAVICA-SPAEALGSRGLLK 47 (121)
Q Consensus 6 ~~~l~~~~~l~~~l~~~~-~~~~~i~aic~-g~~~lLa~aGll~ 47 (121)
+..++.|+.+.+.+++|+ ++++++.+||+ |-+ +|.+.|+|.
T Consensus 1095 a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll~ 1137 (1304)
T PHA03366 1095 VAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAVG 1137 (1304)
T ss_pred HHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCcc
Confidence 356678999999999999 56999999999 965 899999993
No 79
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=87.33 E-value=1.2 Score=32.28 Aligned_cols=28 Identities=18% Similarity=-0.031 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHH
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEA 39 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~l 39 (121)
.+..+.+++...+.++|+.+||.|.+.+
T Consensus 70 ~~~~~~~i~~~~~~~~PvlGIClG~Q~l 97 (235)
T cd01746 70 VEGKILAIKYARENNIPFLGICLGMQLA 97 (235)
T ss_pred hhhHHHHHHHHHHCCceEEEEEhHHHHH
Confidence 3466778899999999999999997643
No 80
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=87.05 E-value=0.59 Score=37.24 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
++..+.+.|+++.++|.+|.++|.|-+ +|.+
T Consensus 304 ~~~~~~~~i~~~~~~G~pvlgiCgG~q-~Lg~ 334 (475)
T TIGR00313 304 KQSGFAEEILDFAKEGGIVIGICGGYQ-MLGK 334 (475)
T ss_pred HhcChHHHHHHHHHcCCcEEEEcHHHH-Hhhh
Confidence 455678889999999999999999864 7776
No 81
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=86.37 E-value=1.4 Score=32.23 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=26.9
Q ss_pred cccCHHHHHHHHHHHhCCCeEEEechhHHHHHH
Q 038375 9 LKESEVLESIVKKQASDGRLNAVICASPAEALG 41 (121)
Q Consensus 9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa 41 (121)
.-+|..-+.+|+.+.++++||.+||-|.+ +|.
T Consensus 90 p~RD~~E~aLi~~ALe~~iPILgICRG~Q-llN 121 (243)
T COG2071 90 PERDAFELALIRAALERGIPILGICRGLQ-LLN 121 (243)
T ss_pred ccccHHHHHHHHHHHHcCCCEEEEccchH-HHH
Confidence 34677788999999999999999999976 454
No 82
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=86.30 E-value=1.2 Score=39.70 Aligned_cols=41 Identities=7% Similarity=0.120 Sum_probs=33.9
Q ss_pred hCcccCHHHHHHHHHHH-hCCCeEEEechhHHHHHHhcC-CCCC
Q 038375 7 TNLKESEVLESIVKKQA-SDGRLNAVICASPAEALGSRG-LLKG 48 (121)
Q Consensus 7 ~~l~~~~~l~~~l~~~~-~~~~~i~aic~g~~~lLa~aG-ll~g 48 (121)
..++.|+.+.+.+++|. ++++++.+||+|-+ +|.+.| ++.+
T Consensus 1104 ~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg~l~p~ 1146 (1290)
T PRK05297 1104 KSILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLKEIIPG 1146 (1290)
T ss_pred HHhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhCCccCC
Confidence 45667899999999977 78999999999855 899997 6654
No 83
>CHL00101 trpG anthranilate synthase component 2
Probab=86.17 E-value=0.73 Score=32.01 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=18.1
Q ss_pred HHHHHhCCCeEEEechhHHHHHHhc
Q 038375 19 VKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 19 l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+.+..+.++|+.+||-|-+ +|+.+
T Consensus 65 i~~~~~~~~PiLGIClG~Q-lla~~ 88 (190)
T CHL00101 65 VISSYAPYIPILGVCLGHQ-SIGYL 88 (190)
T ss_pred HHHHhcCCCcEEEEchhHH-HHHHH
Confidence 3345678999999999976 67763
No 84
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=85.97 E-value=1 Score=34.65 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=24.1
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.++..+++++++.+ ++|+.+||-|-+ +|+.
T Consensus 229 ~~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~ 258 (358)
T TIGR01368 229 AVEPAIETIRKLLE-KIPIFGICLGHQ-LLAL 258 (358)
T ss_pred HHHHHHHHHHHHHc-CCCEEEECHHHH-HHHH
Confidence 34667788998887 899999999977 5665
No 85
>PRK07567 glutamine amidotransferase; Provisional
Probab=85.57 E-value=1.4 Score=31.92 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 16 ESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 16 ~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
.++++....+++++.+||-|-+ +|+.+
T Consensus 83 ~~~i~~~~~~~~PvLGIC~G~Q-lla~a 109 (242)
T PRK07567 83 SGLLDEVVARDFPFLGACYGVG-TLGHH 109 (242)
T ss_pred HHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence 3455555589999999999976 77764
No 86
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=85.55 E-value=0.87 Score=31.59 Aligned_cols=30 Identities=7% Similarity=0.141 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+.....+++. .+.++|+.+||-|-+ +|+.+
T Consensus 59 ~~~~~~~~~~-~~~~~PiLGIClG~Q-~la~a 88 (187)
T PRK08007 59 AGISLDVIRH-YAGRLPILGVCLGHQ-AMAQA 88 (187)
T ss_pred CCccHHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 3445667776 467899999999976 67753
No 87
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=85.46 E-value=0.9 Score=35.88 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=25.1
Q ss_pred CcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 8 NLKESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 8 ~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.+..|... +-|+++.++|++|.++|.|-+ +|.+
T Consensus 291 ~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q-~L~~ 323 (433)
T PRK13896 291 ALADSPAL-DELADRAADGLPVLGECGGLM-ALAE 323 (433)
T ss_pred HHHhCCcH-HHHHHHHHCCCcEEEEehHHH-Hhhc
Confidence 34444445 788999999999999999864 6765
No 88
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=84.93 E-value=1.7 Score=29.85 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 15 LESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 15 l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
....+++...+++++.+||-|-+ +|+.+
T Consensus 60 ~~~~i~~~~~~~~PvlGIC~G~Q-lla~~ 87 (184)
T cd01743 60 ISLEIIRALAGKVPILGVCLGHQ-AIAEA 87 (184)
T ss_pred hHHHHHHHHhcCCCEEEECHhHH-HHHHH
Confidence 34445555577899999999965 67764
No 89
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=84.76 E-value=1.1 Score=31.14 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+.....+++. .++++|+.+||-|-+ +|+.+
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Q-lia~a 88 (193)
T PRK08857 59 AGISLQAIEH-FAGKLPILGVCLGHQ-AIAQV 88 (193)
T ss_pred CcchHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 3344567766 578999999999976 67753
No 90
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=84.67 E-value=0.93 Score=31.41 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
....+++. .++++|+.+||-|-+ +|+.+
T Consensus 61 ~~~~~i~~-~~~~~PiLGIC~G~Q-lla~~ 88 (191)
T PRK06774 61 ISLAVIRH-FADKLPILGVCLGHQ-ALGQA 88 (191)
T ss_pred CchHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 34566665 467899999999976 67764
No 91
>PRK05670 anthranilate synthase component II; Provisional
Probab=83.91 E-value=1.5 Score=30.25 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
...+++++. .+++++.+||-|-+ +|+.+
T Consensus 61 ~~~~~l~~~-~~~~PvLGIClG~Q-lla~a 88 (189)
T PRK05670 61 ISLELIREF-AGKVPILGVCLGHQ-AIGEA 88 (189)
T ss_pred hHHHHHHHh-cCCCCEEEECHHHH-HHHHH
Confidence 456677764 56799999999976 66653
No 92
>PRK05637 anthranilate synthase component II; Provisional
Probab=83.79 E-value=1.6 Score=30.93 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
...++++... .++||.+||-|-+ +|+.+
T Consensus 62 ~~~~li~~~~-~~~PiLGIClG~Q-lla~a 89 (208)
T PRK05637 62 NMMALIDRTL-GQIPLLGICLGFQ-ALLEH 89 (208)
T ss_pred HHHHHHHHHh-CCCCEEEEcHHHH-HHHHH
Confidence 3456676544 5799999999976 67764
No 93
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=83.01 E-value=2.4 Score=29.97 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCeEEEechhHHHHHHhcC
Q 038375 17 SIVKKQASDGRLNAVICASPAEALGSRG 44 (121)
Q Consensus 17 ~~l~~~~~~~~~i~aic~g~~~lLa~aG 44 (121)
.+++...++++++.+||.|.+ +|+..+
T Consensus 68 ~~~~~~~~~~~PvlGiC~G~q-~l~~~~ 94 (209)
T PRK13146 68 AVIEAVLAAGRPFLGICVGMQ-LLFERG 94 (209)
T ss_pred HHHHHHHhCCCcEEEECHHHH-HHhhcc
Confidence 445555578999999999965 788873
No 94
>PRK00758 GMP synthase subunit A; Validated
Probab=82.83 E-value=1.5 Score=30.05 Aligned_cols=26 Identities=12% Similarity=0.003 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
.+.++++ +.++++.+||-|-+ +|+.+
T Consensus 58 ~~~~~l~---~~~~PilGIC~G~Q-~L~~a 83 (184)
T PRK00758 58 NCPEYLK---ELDVPILGICLGHQ-LIAKA 83 (184)
T ss_pred ccHHHHH---hCCCCEEEEeHHHH-HHHHh
Confidence 4555665 45899999999976 67764
No 95
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=82.59 E-value=0.97 Score=32.70 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.-.+-|++..++++++.+||.|++ +|.+
T Consensus 75 ~k~~~l~~~i~~g~p~laiCgg~Q-lLG~ 102 (250)
T COG3442 75 TKKEGLKDAIENGKPVLAICGGYQ-LLGQ 102 (250)
T ss_pred cccHHHHHHHhcCCcEEEEccchh-hccc
Confidence 445678888999999999999987 7774
No 96
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=82.44 E-value=1.1 Score=35.47 Aligned_cols=41 Identities=29% Similarity=0.444 Sum_probs=34.2
Q ss_pred CCccc--hhCcccCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 1 GGVPG--ATNLKESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 1 gG~~g--~~~l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
||.|. ++.|..|+.+++.|+++.+.|++|.+=|.|- +.|.+
T Consensus 296 GGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGl-MYL~~ 338 (451)
T COG1797 296 GGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGL-MYLGE 338 (451)
T ss_pred CCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccc-eeehh
Confidence 56664 5678889999999999999999999999985 46665
No 97
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=82.18 E-value=2.2 Score=29.05 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=17.6
Q ss_pred HHHHHhCCCeEEEechhHHHHHHh
Q 038375 19 VKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 19 l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.+...+.++++.+||.|-+ +|+.
T Consensus 63 ~~~~~~~~~PilGIC~G~Q-ll~~ 85 (181)
T cd01742 63 DPEIFELGVPVLGICYGMQ-LIAK 85 (181)
T ss_pred hHHHHhcCCCEEEEcHHHH-HHHH
Confidence 3444566999999999976 6776
No 98
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=81.50 E-value=2.1 Score=32.96 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=23.4
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
+.....++++++.++ +|+.+||-|-+ +|+.
T Consensus 223 ~~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~ 252 (354)
T PRK12838 223 ELQPYLPEIKKLISS-YPILGICLGHQ-LIAL 252 (354)
T ss_pred HhHHHHHHHHHHhcC-CCEEEECHHHH-HHHH
Confidence 345667788888876 99999999976 6664
No 99
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=81.40 E-value=2.2 Score=29.83 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=20.3
Q ss_pred HHHHHHH-HhCCCeEEEechhHHHHHHhc
Q 038375 16 ESIVKKQ-ASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 16 ~~~l~~~-~~~~~~i~aic~g~~~lLa~a 43 (121)
...|+++ .++++++.+||.|.+ +|+.+
T Consensus 62 ~~~l~~~~~~~~~pvlGiC~G~Q-~l~~~ 89 (201)
T PRK13152 62 IEALKEQVLVQKKPILGICLGMQ-LFLER 89 (201)
T ss_pred HHHHHHHHHhCCCcEEEECHhHH-HHhhc
Confidence 4445554 578999999999976 78875
No 100
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=80.25 E-value=2 Score=36.09 Aligned_cols=31 Identities=6% Similarity=0.036 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+....++|++..+.++|+.+||-|.+ +|+.+
T Consensus 574 d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a 604 (717)
T TIGR01815 574 DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA 604 (717)
T ss_pred hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence 33557788888899999999999976 67764
No 101
>PRK13566 anthranilate synthase; Provisional
Probab=79.63 E-value=2 Score=36.16 Aligned_cols=30 Identities=7% Similarity=-0.038 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
..+..++++..++++||.+||-|-+ +|+.+
T Consensus 585 ~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a 614 (720)
T PRK13566 585 FDCKATIDAALARNLPIFGVCLGLQ-AIVEA 614 (720)
T ss_pred CCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence 3578899999999999999999976 66653
No 102
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=79.40 E-value=0.2 Score=30.00 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=29.2
Q ss_pred cccCHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCe
Q 038375 9 LKESEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLK 50 (121)
Q Consensus 9 l~~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~ 50 (121)
+..++.+..+-+.|.+.+..-++.|+- -++++...||+..+
T Consensus 5 l~~~~~~~~iq~af~~~~a~QCGfCtp-G~im~~~~ll~~~~ 45 (75)
T PF01799_consen 5 LASDGELHPIQQAFVEHGAVQCGFCTP-GMIMAAYALLRRNP 45 (75)
T ss_dssp SSBTTB--HHHHHHHHTT--SSSSSHH-HHHHHHHHHHHHSS
T ss_pred CCCCCCcCHHHHHHHHhCCCcCCcchH-HHHHHHHHHhhccc
Confidence 445677777888888999999999995 57899888887433
No 103
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=78.57 E-value=4.6 Score=29.85 Aligned_cols=27 Identities=15% Similarity=-0.038 Sum_probs=17.3
Q ss_pred HHHHHHHHH---hCC--CeEEEechhHHHHHHh
Q 038375 15 LESIVKKQA---SDG--RLNAVICASPAEALGS 42 (121)
Q Consensus 15 l~~~l~~~~---~~~--~~i~aic~g~~~lLa~ 42 (121)
...+++... ++| .|+.++|-|-. +|+.
T Consensus 76 ~~~l~~~a~~~~~~g~~~Pv~GiClG~Q-lL~~ 107 (273)
T cd01747 76 AKIIYNLALERNDAGDYFPVWGTCLGFE-LLTY 107 (273)
T ss_pred HHHHHHHHHHhhhcCCCCcEEEEcHHHH-HHHH
Confidence 344444444 334 79999999865 5654
No 104
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=78.40 E-value=1.9 Score=30.08 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=16.0
Q ss_pred HHhCCCeEEEechhHHHHHHhc
Q 038375 22 QASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 22 ~~~~~~~i~aic~g~~~lLa~a 43 (121)
..+.+++|.+||.|.+ +|+.+
T Consensus 66 i~~~~~PilGIClG~Q-ll~~~ 86 (196)
T PRK13170 66 IKACTQPVLGICLGMQ-LLGER 86 (196)
T ss_pred HHHcCCCEEEECHHHH-HHhhh
Confidence 3345899999999976 77765
No 105
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=77.28 E-value=1.3 Score=28.67 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCeEEEechhHHHHHH
Q 038375 16 ESIVKKQASDGRLNAVICASPAEALG 41 (121)
Q Consensus 16 ~~~l~~~~~~~~~i~aic~g~~~lLa 41 (121)
.+.|+++.++++++.+||.| + .++
T Consensus 67 ~~~i~~~v~~g~p~LGIClG-A-y~a 90 (114)
T cd03144 67 NRRIRNFVRNGGNYLGICAG-A-YLA 90 (114)
T ss_pred cHHHHHHHHCCCcEEEEecC-c-cce
Confidence 77888888999999999998 4 455
No 106
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=76.91 E-value=4.1 Score=31.77 Aligned_cols=29 Identities=21% Similarity=-0.012 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
...++.++++.+.+.++.+||-|-+ +|+.
T Consensus 250 ~~~i~~i~~~~~~~~PilGIClGhQ-lLa~ 278 (382)
T CHL00197 250 HYGIKTVKKLLKYNIPIFGICMGHQ-ILSL 278 (382)
T ss_pred HHHHHHHHHHHhCCCCEEEEcHHHH-HHHH
Confidence 4566777777777899999999976 5664
No 107
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=73.04 E-value=4.7 Score=28.64 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHH
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALG 41 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa 41 (121)
|..=+.+++...+++++|.+||-|-+ +|.
T Consensus 92 d~~e~~l~~~a~~~~~PilGICrG~Q-~ln 120 (217)
T PF07722_consen 92 DIFELALIRNALGRGKPILGICRGMQ-LLN 120 (217)
T ss_dssp HHHHHHHHHHHCCTT--EEEETHHHH-HHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcHHHH-HHH
Confidence 44455778888899999999999977 443
No 108
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=72.81 E-value=5.2 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.+.+.|++..++|++++++|.|. .++.+
T Consensus 102 ~l~~~l~~~~~~g~~i~G~SAGa-~i~~~ 129 (212)
T cd03146 102 GLDAILKAALERGVVYIGWSAGS-NCWFP 129 (212)
T ss_pred CHHHHHHHHHHCCCEEEEECHhH-HhhCC
Confidence 57778888889999999999985 46666
No 109
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=70.85 E-value=4.4 Score=28.34 Aligned_cols=27 Identities=4% Similarity=0.032 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 15 LESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 15 l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
....++.+ ..++|+.+||-|.+ +|+.+
T Consensus 62 ~~~~i~~~-~~~~PvLGIClG~Q-lla~~ 88 (195)
T PRK07649 62 SMEVIRYF-AGKIPIFGVCLGHQ-SIAQV 88 (195)
T ss_pred chHHHHHh-cCCCCEEEEcHHHH-HHHHH
Confidence 44556644 57899999999976 67763
No 110
>PRK05380 pyrG CTP synthetase; Validated
Probab=68.36 E-value=9.1 Score=31.21 Aligned_cols=27 Identities=11% Similarity=-0.077 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHH
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAE 38 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~ 38 (121)
.+..+.+++...++++|+.+||-|-++
T Consensus 358 ~~g~i~~i~~a~e~~iPiLGIClGmQl 384 (533)
T PRK05380 358 IEGKILAIRYARENNIPFLGICLGMQL 384 (533)
T ss_pred cccHHHHHHHHHHCCCcEEEEchHHHH
Confidence 445678888888999999999999763
No 111
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=66.87 E-value=7.5 Score=27.33 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
.+.+.|++ ..++++.+||.|-+ +|.+
T Consensus 60 gl~~~i~~--~~g~PvlGIClGmQ-lL~~ 85 (192)
T PRK13142 60 NLNAILAK--NTDKKMIGICLGMQ-LMYE 85 (192)
T ss_pred CcHHHHHH--hCCCeEEEECHHHH-HHhh
Confidence 35667776 46899999999976 6664
No 112
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=66.62 E-value=4.7 Score=29.22 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=24.1
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
+...+.+.|++..++|+++++.|.| +.+++.
T Consensus 98 ~~~gl~~~l~~~~~~G~~~~G~SAG-Aii~~~ 128 (233)
T PRK05282 98 YERGLLAPIREAVKNGTPYIGWSAG-ANVAGP 128 (233)
T ss_pred HHCCcHHHHHHHHHCCCEEEEECHH-HHhhhc
Confidence 3445777889999999999999998 445444
No 113
>PRK06186 hypothetical protein; Validated
Probab=64.37 E-value=14 Score=26.78 Aligned_cols=29 Identities=7% Similarity=0.081 Sum_probs=23.7
Q ss_pred ccCHHHHHHHHHHHhCCCeEEEechhHHH
Q 038375 10 KESEVLESIVKKQASDGRLNAVICASPAE 38 (121)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~~i~aic~g~~~ 38 (121)
+.-+--+..++...++++|+.+||-|.++
T Consensus 66 rg~~Gki~ai~~Are~~iP~LGIClGmQ~ 94 (229)
T PRK06186 66 RNDDGALTAIRFARENGIPFLGTCGGFQH 94 (229)
T ss_pred ccHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence 34456677899999999999999999763
No 114
>PLN02347 GMP synthetase
Probab=63.89 E-value=13 Score=30.23 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=17.9
Q ss_pred HHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 18 IVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 18 ~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+++...+.++||.+||-|-+ +|+.+
T Consensus 78 i~~~~~~~~iPILGIClG~Q-lLa~a 102 (536)
T PLN02347 78 FFDYCRERGVPVLGICYGMQ-LIVQK 102 (536)
T ss_pred HHHHHHhcCCcEEEECHHHH-HHHHH
Confidence 33434457899999999976 67763
No 115
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=63.20 E-value=12 Score=29.66 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
.+..++.+++.. .+++|.+||-|-+ +|+.+
T Consensus 297 ~~~~ie~ik~l~-~~iPIlGICLGhQ-lLa~A 326 (415)
T PLN02771 297 VPYAVETVKELL-GKVPVFGICMGHQ-LLGQA 326 (415)
T ss_pred hhHHHHHHHHHH-hCCCEEEEcHHHH-HHHHh
Confidence 355677777765 4799999999976 67753
No 116
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=62.69 E-value=7.8 Score=31.43 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
....++++.+ ..++||.+||-|-+ +|+.+
T Consensus 61 ~~~~~li~~~-~~~~PvLGIClG~Q-lLa~a 89 (534)
T PRK14607 61 GISVEVIRHF-SGKVPILGVCLGHQ-AIGYA 89 (534)
T ss_pred CccHHHHHHh-hcCCCEEEEcHHHH-HHHHH
Confidence 3456677764 67899999999976 66653
No 117
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=59.38 E-value=8.1 Score=31.41 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=15.6
Q ss_pred HhCCCeEEEechhHHHHHHhc
Q 038375 23 ASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 23 ~~~~~~i~aic~g~~~lLa~a 43 (121)
...++||.+||-|-+ +|+.+
T Consensus 74 ~~~~iPILGIClG~Q-lLa~a 93 (531)
T PRK09522 74 LRGKLPIIGICLGHQ-AIVEA 93 (531)
T ss_pred HhcCCCEEEEcHHHH-HHHHh
Confidence 346899999999976 67763
No 118
>PF07911 DUF1677: Protein of unknown function (DUF1677); InterPro: IPR012876 The sequences found in this family are all derived from hypothetical plant proteins of unknown function. The region features a number of highly conserved cysteine residues.
Probab=57.28 E-value=6.9 Score=24.29 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHhCCCeEEEechh
Q 038375 12 SEVLESIVKKQASDGRLNAVICAS 35 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g 35 (121)
.+..+..+|..+. |+||+++|.=
T Consensus 17 T~~YI~~VR~ry~-GrWvCGLC~E 39 (91)
T PF07911_consen 17 TPEYIARVRERYG-GRWVCGLCSE 39 (91)
T ss_pred cHHHHHHHHHHhC-CeehhhcCHH
Confidence 4678888888774 9999999995
No 119
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=56.97 E-value=18 Score=28.09 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+..++.+++.....+|+.+||-|=+ +|+-|
T Consensus 237 ~~~i~~ik~l~~~~iPifGICLGHQ-llalA 266 (368)
T COG0505 237 DYAIETIKELLGTKIPIFGICLGHQ-LLALA 266 (368)
T ss_pred HHHHHHHHHHhccCCCeEEEcHHHH-HHHHh
Confidence 4677889999988889999999865 77754
No 120
>PLN02335 anthranilate synthase
Probab=56.62 E-value=17 Score=25.97 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 15 LESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 15 l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
..++++.. ...+|+.+||-|-+ +|+.
T Consensus 81 ~~~~~~~~-~~~~PiLGIClG~Q-lLa~ 106 (222)
T PLN02335 81 SLQTVLEL-GPLVPLFGVCMGLQ-CIGE 106 (222)
T ss_pred hHHHHHHh-CCCCCEEEecHHHH-HHHH
Confidence 35555543 56799999999976 6665
No 121
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=55.19 E-value=17 Score=29.67 Aligned_cols=28 Identities=18% Similarity=-0.031 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHH
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEA 39 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~l 39 (121)
.+..+..++.+.+++.|+.+||-|-+++
T Consensus 358 ~~g~i~ai~~a~e~~iP~LGIClG~Qll 385 (525)
T TIGR00337 358 VEGKILAIKYARENNIPFLGICLGMQLA 385 (525)
T ss_pred hcChHHHHHHHHHcCCCEEEEcHHHHHH
Confidence 3445567788888999999999997633
No 122
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=53.97 E-value=6.8 Score=32.63 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHH-hhc
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFME-QLA 62 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~-~l~ 62 (121)
++++++||+..-+.+.+.++- + -++|.-.|-.|++++.||.+++ .++
T Consensus 505 ~~eL~~WIk~nt~~~AvFAGs---M-~lma~vkL~T~r~ivnHPhYEd~~LR 552 (642)
T PF10034_consen 505 TEELMEWIKSNTPPDAVFAGS---M-PLMASVKLCTGRPIVNHPHYEDADLR 552 (642)
T ss_pred HHHHHHHHHhcCCCCCeeccC---c-chHHHHHHhcCCccccCcccCCHHHH
Confidence 468999999887766554443 3 3788888999999999998765 444
No 123
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=53.49 E-value=21 Score=25.80 Aligned_cols=29 Identities=24% Similarity=0.133 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+|.+++++.....+.|.+||-|=+ +++++
T Consensus 81 KLcs~~kkld~mkkkvlGICFGHQ-iiara 109 (245)
T KOG3179|consen 81 KLCSFVKKLDFMKKKVLGICFGHQ-IIARA 109 (245)
T ss_pred HHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence 678888988888899999999976 67763
No 124
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=52.14 E-value=9.1 Score=25.48 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=23.6
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHH
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEAL 40 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lL 40 (121)
++..+.+.|++..++|++++++..| +.++
T Consensus 54 ~~t~l~~~i~~~~~~G~vi~G~SAG-A~i~ 82 (154)
T PF03575_consen 54 KETGLDEAIREAYRKGGVIIGTSAG-AMIL 82 (154)
T ss_dssp HHTTHHHHHHHHHHTTSEEEEETHH-HHCT
T ss_pred HhCCHHHHHHHHHHCCCEEEEEChH-Hhhc
Confidence 4556888999999999999999997 5444
No 125
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=51.69 E-value=21 Score=25.20 Aligned_cols=30 Identities=7% Similarity=0.188 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHHh
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
+-....+.|+++ ....+|.+||-|=+ .++.
T Consensus 60 d~G~~~~~i~~~-~~~~PiLGVCLGHQ-ai~~ 89 (191)
T COG0512 60 DAGISLELIRRF-AGRIPILGVCLGHQ-AIAE 89 (191)
T ss_pred HcchHHHHHHHh-cCCCCEEEECccHH-HHHH
Confidence 344578888988 66799999999876 5665
No 126
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=51.50 E-value=16 Score=29.37 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
..+.+.|+++ |+++.+||.|-+ +|.+.
T Consensus 55 ~~l~~~i~~~---g~pvlGICgG~Q-mLg~~ 81 (476)
T PRK06278 55 DELKKEILNF---DGYIIGICSGFQ-ILSEK 81 (476)
T ss_pred HHHHHHHHHc---CCeEEEEcHHHH-hcccc
Confidence 3455555555 899999999976 77765
No 127
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=50.70 E-value=26 Score=29.78 Aligned_cols=27 Identities=15% Similarity=-0.033 Sum_probs=18.2
Q ss_pred HHHHHHHHhC----CCeEEEechhHHHHHHhc
Q 038375 16 ESIVKKQASD----GRLNAVICASPAEALGSR 43 (121)
Q Consensus 16 ~~~l~~~~~~----~~~i~aic~g~~~lLa~a 43 (121)
..++++..+. .+|+.+||-|-+ +|+.+
T Consensus 72 ~~i~~~i~~~~~~~~iPvLGIClG~Q-lLa~a 102 (742)
T TIGR01823 72 MGIISELWELANLDEVPVLGICLGFQ-SLCLA 102 (742)
T ss_pred hHHHHHHHHhcccCCCcEEEEchhhH-HHHhh
Confidence 4445554443 599999999976 66653
No 128
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=47.83 E-value=24 Score=27.54 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=25.9
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHH
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALG 41 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa 41 (121)
.+..+.+-|++..+.+|++.+||.|-+.|+.
T Consensus 59 ~~~Gf~eplr~YiesgkPfmgicvGlQaLF~ 89 (541)
T KOG0623|consen 59 NRTGFAEPLRKYIESGKPFMGICVGLQALFD 89 (541)
T ss_pred hhhhhHHHHHHHHhcCCCeEeehhhHHHHhc
Confidence 4667888899999999999999999775554
No 129
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=45.46 E-value=31 Score=26.86 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+..-.+.||+|.++|.-..+||.| + .++..
T Consensus 68 ~~~g~~~Ir~fV~~GG~YlGiCAG-a-Y~as~ 97 (367)
T PF09825_consen 68 NGEGNRRIRQFVENGGGYLGICAG-A-YYASS 97 (367)
T ss_pred ChHHHHHHHHHHHcCCcEEEECcc-h-hhhcc
Confidence 566678999999999999999998 4 46653
No 130
>PLN02327 CTP synthase
Probab=44.58 E-value=37 Score=27.93 Aligned_cols=29 Identities=17% Similarity=-0.075 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHH
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALG 41 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa 41 (121)
+..+..++.+.++++|+.+||-|-+++..
T Consensus 378 ~G~i~ai~~are~~iP~LGIClGmQl~vi 406 (557)
T PLN02327 378 EGKILAAKYARENKVPYLGICLGMQIAVI 406 (557)
T ss_pred ccHHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 34466777788899999999999764333
No 131
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=38.81 E-value=33 Score=23.91 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 15 LESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 15 l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+.+.|++.+.+|.++++.|.|. .++...
T Consensus 103 ~~~~i~~~~~~G~v~~G~SAGA-~~~~~~ 130 (210)
T cd03129 103 LLDAILKRVARGVVIGGTSAGA-AVMGET 130 (210)
T ss_pred hHHHHHHHHHcCCeEEEcCHHH-HHhhhc
Confidence 5555566666999999999985 567663
No 132
>PRK00074 guaA GMP synthase; Reviewed
Probab=37.34 E-value=38 Score=27.36 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=17.0
Q ss_pred HHHHhCCCeEEEechhHHHHHHh
Q 038375 20 KKQASDGRLNAVICASPAEALGS 42 (121)
Q Consensus 20 ~~~~~~~~~i~aic~g~~~lLa~ 42 (121)
+...+.++|+.+||-|-+ +|+.
T Consensus 69 ~~i~~~~~PvLGIC~G~Q-lLa~ 90 (511)
T PRK00074 69 PEIFELGVPVLGICYGMQ-LMAH 90 (511)
T ss_pred HHHHhCCCCEEEECHHHH-HHHH
Confidence 344567999999999976 6665
No 133
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=36.01 E-value=37 Score=23.78 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCC-CeEEEechhH
Q 038375 14 VLESIVKKQASDG-RLNAVICASP 36 (121)
Q Consensus 14 ~l~~~l~~~~~~~-~~i~aic~g~ 36 (121)
.+..-|-++..++ +++.+.|.|.
T Consensus 78 gL~d~L~~fVhn~~k~~WGTCAGm 101 (226)
T KOG3210|consen 78 GLYDDLYAFVHNPSKVTWGTCAGM 101 (226)
T ss_pred hhHHHHHHHhcCCCccceeechhh
Confidence 4777788887777 9999999983
No 134
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=35.84 E-value=52 Score=23.26 Aligned_cols=30 Identities=13% Similarity=0.105 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHH
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALG 41 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa 41 (121)
.+..+.+.|++.+++|.++++...|. .++.
T Consensus 102 ~~t~l~~~l~~~~~~G~v~~G~SAGA-~i~~ 131 (217)
T cd03145 102 GGTPLLDALRKVYRGGVVIGGTSAGA-AVMS 131 (217)
T ss_pred cCChHHHHHHHHHHcCCEEEEccHHH-Hhhh
Confidence 35567788999999999999999984 4544
No 135
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=34.88 E-value=1.4e+02 Score=25.09 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=31.6
Q ss_pred cCHHHHHHHHHHHhCCCeEE-EechhHHHHHHhcCCCCCCeeecCcchHHhhccccc
Q 038375 11 ESEVLESIVKKQASDGRLNA-VICASPAEALGSRGLLKGLKATCYPSFMEQLAPACA 66 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~-aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~ 66 (121)
+++++++.+++.-.+|.-|. ..|+|. -+|.+- |....++|..++.....|+
T Consensus 265 ~~~e~~~~ak~~GakGInv~G~cCTg~-E~l~r~----g~p~aGn~~~qE~~i~TGa 316 (613)
T cd01915 265 RELELQEEAKAAGAKGINVVGICCTGN-ELLMRH----GVPLAGNWLSQELAIATGA 316 (613)
T ss_pred hChhHHHHHHHcCCCCeEEEeeecchh-hhHhhc----CCCcCCcHHHHHHHhcCCC
Confidence 46677777777767775444 555875 466653 5566777766555444454
No 136
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=34.76 E-value=28 Score=20.08 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=13.4
Q ss_pred HHHhCCCeEEEechhHH
Q 038375 21 KQASDGRLNAVICASPA 37 (121)
Q Consensus 21 ~~~~~~~~i~aic~g~~ 37 (121)
+-+++||-|.++|.|-.
T Consensus 39 qeFkrGKsIiAV~EGe~ 55 (67)
T TIGR02922 39 QEFKRGKSIIAVCEGEI 55 (67)
T ss_pred hHHcCCCeEEEEEecce
Confidence 34578999999999843
No 137
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=34.09 E-value=27 Score=19.84 Aligned_cols=13 Identities=38% Similarity=0.578 Sum_probs=10.8
Q ss_pred hCCCeEEEechhH
Q 038375 24 SDGRLNAVICASP 36 (121)
Q Consensus 24 ~~~~~i~aic~g~ 36 (121)
+++++++++|.|-
T Consensus 8 ~~~~~i~GVcaGl 20 (61)
T PF04024_consen 8 RDDRVIAGVCAGL 20 (61)
T ss_pred CCCCEEeeeHHHH
Confidence 4579999999973
No 138
>PRK05320 rhodanese superfamily protein; Provisional
Probab=34.04 E-value=1.3e+02 Score=22.08 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=27.7
Q ss_pred CCCeEEEechhHH------HHHHhcCCCCCCeee-cCcchHHhhccc-ccccccCcEEecCCe
Q 038375 25 DGRLNAVICASPA------EALGSRGLLKGLKAT-CYPSFMEQLAPA-CATTVESRVPQDGKV 79 (121)
Q Consensus 25 ~~~~i~aic~g~~------~lLa~aGll~g~~~t-~~~~~~~~l~~~-g~~~~~~~~v~dg~i 79 (121)
+++.|..+|+++. -+|.+.|+- ++. ..-.+..+.++. +..|..+-+|.|.++
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~---~V~~L~GGi~~w~~~~~~~~~~G~~fVFD~R~ 233 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGID---NVYQLEGGILKYFEEVGGAHYDGDCFVFDYRT 233 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCc---ceEEeccCHHHHHHhCCCCeeeeeeeeecCee
Confidence 5789999999862 244455552 121 112233444332 223555667777665
No 139
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=33.90 E-value=90 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCeEEEechhHHHHH
Q 038375 15 LESIVKKQASDGRLNAVICASPAEAL 40 (121)
Q Consensus 15 l~~~l~~~~~~~~~i~aic~g~~~lL 40 (121)
+.++++...+..+.+.+||-|.+.++
T Consensus 124 l~~i~~w~~~~~~s~LgICwGaQa~a 149 (302)
T PRK05368 124 LKEILDWAKTHVTSTLFICWAAQAAL 149 (302)
T ss_pred HHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence 55555555556899999999976433
No 140
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=33.87 E-value=28 Score=20.35 Aligned_cols=23 Identities=9% Similarity=0.174 Sum_probs=16.3
Q ss_pred HHHHHhCCCeEEEechhHHHHHH
Q 038375 19 VKKQASDGRLNAVICASPAEALG 41 (121)
Q Consensus 19 l~~~~~~~~~i~aic~g~~~lLa 41 (121)
|-+.+++||-|.++|.|=.-+|-
T Consensus 39 iP~~Fr~GKsIiAVleGe~~iLn 61 (71)
T PF09558_consen 39 IPQSFRRGKSIIAVLEGECKILN 61 (71)
T ss_pred ChHHHcCCceEEEEEcCceehhh
Confidence 33456789999999998543443
No 141
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=32.49 E-value=70 Score=20.04 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHhhccccccccCC
Q 038375 86 CTTMEFAVALVEQLYGKERADEVSGPLVVTFIDN 119 (121)
Q Consensus 86 ~~~~~~a~~li~~~~~~~~a~~v~~~l~~~~~~~ 119 (121)
....+++..+++..+|++.++.+-+.+....+++
T Consensus 72 ~gg~~~~~~lL~~alg~~~a~~il~~~~~~~~~~ 105 (108)
T PF14842_consen 72 SGGRDFARRLLEKALGEEKAKEILDRLEQSMESR 105 (108)
T ss_dssp S-HHHHHHH-HHHHS---HHHHH----------T
T ss_pred cChHHHHHHHHHHHCCHHHHHHHHHHHhcccCCC
Confidence 4678999999999999999999998887666554
No 142
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=30.87 E-value=54 Score=23.88 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=23.9
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechhHHHHHH
Q 038375 11 ESEVLESIVKKQASDGRLNAVICASPAEALG 41 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g~~~lLa 41 (121)
++..+...|++.+++|.++++..+|. .++.
T Consensus 101 ~~t~l~~~l~~~~~~G~vi~G~SAGA-~i~~ 130 (250)
T TIGR02069 101 GDTPLLDRLRKRVHEGIILGGTSAGA-AVMS 130 (250)
T ss_pred cCCcHHHHHHHHHHcCCeEEEccHHH-Hhcc
Confidence 45567788999999999999999984 3443
No 143
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=30.43 E-value=55 Score=24.86 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=16.7
Q ss_pred HHHHHHHHHH--hCCCeEEEechhH
Q 038375 14 VLESIVKKQA--SDGRLNAVICASP 36 (121)
Q Consensus 14 ~l~~~l~~~~--~~~~~i~aic~g~ 36 (121)
++-.|+++.. .++|.|+..|+|+
T Consensus 158 efP~~v~~~~~~~~~KkVvmyCTGG 182 (308)
T COG1054 158 EFPAWVEENLDLLKDKKVVMYCTGG 182 (308)
T ss_pred hhHHHHHHHHHhccCCcEEEEcCCc
Confidence 4556666544 3678999999986
No 144
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=30.26 E-value=38 Score=20.63 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCeEEEechhHHHHHHhcCCCC
Q 038375 16 ESIVKKQASDGRLNAVICASPAEALGSRGLLK 47 (121)
Q Consensus 16 ~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~ 47 (121)
.+++++.+.+.+.+..+|..+..+=.-+.+|.
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~ 33 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLK 33 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH--
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhc
Confidence 46788899999999999997754333345554
No 145
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=29.99 E-value=10 Score=25.60 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCC
Q 038375 14 VLESIVKKQASDGRLNAVICASPAEALGSRGLLKG 48 (121)
Q Consensus 14 ~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g 48 (121)
.+..+=+.|.+.+..=++.|+- -++++...||+.
T Consensus 81 ~l~pvq~af~~~~a~QCGfCtP-G~vms~~~ll~~ 114 (148)
T TIGR03193 81 RLSRLQQAFHERLGTQCGFCTP-GMIMAAEALLRR 114 (148)
T ss_pred CCCHHHHHHHHcCCCcCCCCCc-cHHHHHHHHHHc
Confidence 3334444566788889999995 578998888864
No 146
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=29.42 E-value=42 Score=29.45 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCCChhhHHHHH
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFA 92 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~g~~~~~~~a 92 (121)
..+..+-+.|.+.+..=|+.|+- -++++...||+...-.+ .+.+++. .+||+.=|.|.....+..
T Consensus 77 ~~~~~~q~af~~~~a~QCG~Ctp-G~~~~~~~ll~~~~~p~----~~~i~~~----------l~gnlcrctgy~~i~~av 141 (951)
T TIGR03313 77 NQLSLVQQAMVDVGVVQSGYNDP-AAALILTDLLDRNTQPN----RAEIDDA----------LSGLFSRDAGYQQFYQVI 141 (951)
T ss_pred CCCCHHHHHHHHcCCCcCCCChH-HHHHHHHHHHhcCCCCC----HHHHHHH----------HhcceeccCCcHHHHHHH
Confidence 34444555677888999999995 47899888887533222 2223221 247777788887777766
Q ss_pred HHHHHHhcC
Q 038375 93 VALVEQLYG 101 (121)
Q Consensus 93 ~~li~~~~~ 101 (121)
....+...+
T Consensus 142 ~~~~~~~~~ 150 (951)
T TIGR03313 142 ELAVKRLKD 150 (951)
T ss_pred HHHHHhccc
Confidence 655554444
No 147
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=27.11 E-value=43 Score=29.41 Aligned_cols=73 Identities=18% Similarity=0.096 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCCChhhHHHH
Q 038375 12 SEVLESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEF 91 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~g~~~~~~~ 91 (121)
+..+..+-+.|.+.+..=|+.|+- -++++...||+...-.+ .+.+++. .+||+.=|.|.....+.
T Consensus 80 ~~~~~~~q~af~~~~~~QCG~Ctp-G~~m~~~~ll~~~~~p~----~~~i~~~----------l~gnlCRCtgy~~i~~a 144 (956)
T PRK09800 80 WNELSLVQQAMVDVGVVQSGYNDP-AAALIITDLLDRIAAPT----REEIDDA----------LSGLFSRDAGWQQYYQV 144 (956)
T ss_pred CCCCCHHHHHHHHcCCCcCCCChH-HHHHHHHHHHhcCCCCC----HHHHHHH----------HhhchhccCCcHHHHHH
Confidence 334445555677888999999995 57899888886432222 2222221 34777778888777776
Q ss_pred HHHHHHHh
Q 038375 92 AVALVEQL 99 (121)
Q Consensus 92 a~~li~~~ 99 (121)
.....+..
T Consensus 145 v~~~~~~~ 152 (956)
T PRK09800 145 IELAVARK 152 (956)
T ss_pred HHHHHHhh
Confidence 65555443
No 148
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.80 E-value=1.2e+02 Score=17.17 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=20.2
Q ss_pred cCHHHHHHHHHHHhCCCeEEEech
Q 038375 11 ESEVLESIVKKQASDGRLNAVICA 34 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~ 34 (121)
.++++++.++...++|..+.++++
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~it~ 82 (87)
T cd04795 59 RTEELLAALEIAKELGIPVIAITD 82 (87)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEeh
Confidence 367889999999999999999873
No 149
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.63 E-value=1.1e+02 Score=18.98 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHHHhCCCeEEEechh
Q 038375 11 ESEVLESIVKKQASDGRLNAVICAS 35 (121)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~i~aic~g 35 (121)
.++++.+.++...+++.++.+++..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4678899999998889888888874
No 150
>PF00473 CRF: Corticotropin-releasing factor family; InterPro: IPR000187 Corticotropin-releasing factor (CRF), urotensin-I, urocortin and sauvagine form a family of related neuropeptides in vertebrates. The family can be grouped into 2 separate paralogous lineages, with urotensin-I, urocortin and sauvagine in one group and CRF forming the other group. Urocortin and sauvagine appear to represent orthologues of fish urotensin-I in mammals and amphibians, respectively. The peptides have a variety of physiological effects on stress and anxiety, vasoregulation, thermoregulation, growth and metabolism, metamorphosis and reproduction in various species, and are all released as preprohormones []. CRF [] is a hormone found mainly in the paraventricular nucleus of the mammalian hypothalamus that regulates the release of corticotropin (ACTH) from the pituitary gland. From here, CRF is transported to the anterior pituitary, stimulating adrenocorticotropic hormone (ACTH) release via CRF type 1 receptors, thereby activating the hypothalamo-pituitary-adrenocortical axis (HPA) and thus glucocorticoid release. CRF is evolutionary related to a number of other active peptides. Urocortin acts in vitro to stimulate the secretion of adrenocorticotropic hormone. Urotensin is found in the teleost caudal neurosecretory system and may play a role in osmoregulation and as a corticotropin-releasing factor. Urotensin-I is released from the urophysis of fish, and produces ACTH and subsequent cortisol release in vivo. The nonhormonal portion of the prohormone is thought to be the urotensin binding protein (urophysin). Sauvagine (P01144 from SWISSPROT), isolated from frog skin, has a potent hypotensive and diuretic effect.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3EHU_C 3EHT_B 2RMF_A 3N96_G.
Probab=26.22 E-value=94 Score=16.10 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=20.5
Q ss_pred ChhhHHHHHHHHHHHhcCHHHHHHhhcc
Q 038375 84 GPCTTMEFAVALVEQLYGKERADEVSGP 111 (121)
Q Consensus 84 g~~~~~~~a~~li~~~~~~~~a~~v~~~ 111 (121)
+|+-++++.+.++++..-.+++++..+.
T Consensus 1 ~PslSIdl~~~vLR~~l~~~~a~~~~~q 28 (39)
T PF00473_consen 1 MPSLSIDLTFHVLRQRLELERAERQMKQ 28 (39)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3566899999999999988888765553
No 151
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=24.95 E-value=89 Score=14.52 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHh
Q 038375 12 SEVLESIVKKQAS 24 (121)
Q Consensus 12 ~~~l~~~l~~~~~ 24 (121)
-|.++.||++..+
T Consensus 13 LP~lISWIK~kr~ 25 (26)
T PF01372_consen 13 LPTLISWIKNKRQ 25 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhc
Confidence 4789999987654
No 152
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=24.27 E-value=1.2e+02 Score=27.24 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCCeEEEechhHHHHHHhc
Q 038375 13 EVLESIVKKQASDGRLNAVICASPAEALGSR 43 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~~~lLa~a 43 (121)
+.+..-+++....++||.+||.|= .+|+.+
T Consensus 227 ~~~v~~vr~lL~~~~PvfGIClGH-QllA~A 256 (1435)
T KOG0370|consen 227 PLLVQNVRELLESNVPVFGICLGH-QLLALA 256 (1435)
T ss_pred HHHHHHHHHHHhCCCCeEEEehhh-HHHHHh
Confidence 345556666666779999999985 478763
No 153
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=22.54 E-value=1.1e+02 Score=19.16 Aligned_cols=24 Identities=13% Similarity=0.201 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCeEEEechhH
Q 038375 13 EVLESIVKKQASDGRLNAVICASP 36 (121)
Q Consensus 13 ~~l~~~l~~~~~~~~~i~aic~g~ 36 (121)
+.+.++++...+++++|.-.|.+|
T Consensus 68 ~~~~~~i~~~~~~~~~vlVHC~~G 91 (139)
T cd00127 68 DEAVDFIDDAREKGGKVLVHCLAG 91 (139)
T ss_pred HHHHHHHHHHHhcCCcEEEECCCC
Confidence 456788888888899999999765
No 154
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=22.53 E-value=68 Score=20.81 Aligned_cols=24 Identities=8% Similarity=0.010 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhCCCeEEEechh
Q 038375 12 SEVLESIVKKQASDGRLNAVICAS 35 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g 35 (121)
+....++++++.++.|+|.|+++=
T Consensus 59 ~~~~~e~~~~~~~~a~~vIAvGtC 82 (131)
T PF01058_consen 59 MEEALEWLKELRPKAKAVIAVGTC 82 (131)
T ss_dssp GEEHHHHHHHHHGCSSEEEEEHHH
T ss_pred chHHHHHHHHHccCCceeEcCCCc
Confidence 456788999999999999999874
No 155
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=21.82 E-value=1.2e+02 Score=20.70 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHhCCCeEEEechhH
Q 038375 12 SEVLESIVKKQASDGRLNAVICASP 36 (121)
Q Consensus 12 ~~~l~~~l~~~~~~~~~i~aic~g~ 36 (121)
=.++.++|....++++.|...|-||
T Consensus 91 l~~~v~~i~~~~~~g~kVvVHC~~G 115 (180)
T COG2453 91 LDKIVDFIEEALSKGKKVVVHCQGG 115 (180)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 3578899999999999999999875
No 156
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=21.47 E-value=61 Score=21.94 Aligned_cols=64 Identities=11% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCeEEEechhHHHHHHhcCCCCCCeeecCcchHHhhcccccccccCcEEecCCeEcCCChhhHHHHHHH
Q 038375 16 ESIVKKQASDGRLNAVICASPAEALGSRGLLKGLKATCYPSFMEQLAPACATTVESRVPQDGKVVTSRGPCTTMEFAVA 94 (121)
Q Consensus 16 ~~~l~~~~~~~~~i~aic~g~~~lLa~aGll~g~~~t~~~~~~~~l~~~g~~~~~~~~v~dg~i~T~~g~~~~~~~a~~ 94 (121)
..+=+.|.+.+..=++.|+- -++++...||+..+-. ..+.+++. .+||+-=|.|.....+.+..
T Consensus 84 ~pvQ~af~~~~a~QCGfCtp-G~im~~~~ll~~~p~p----~~~ei~~a----------l~gnlCRCtgY~~I~~Av~~ 147 (151)
T TIGR03198 84 DPCQTAFLEEGGFQCGYCTP-GMVVALKALFRETPQP----SDEDMEEG----------LSGNLCRCTGYGGIIRSACR 147 (151)
T ss_pred CHHHHHHHHcCCCcCCCCCc-cHHHHHHHHHHcCCCC----CHHHHHHH----------HcCCCcCCCCCHHHHHHHHH
Confidence 33444566778888999995 5789988898643221 22233221 35666667776665554443
No 157
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=20.12 E-value=1.2e+02 Score=18.06 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=23.2
Q ss_pred CCeEcCCChhhHHHHHHHHHHHhcCHHHHHHhh
Q 038375 77 GKVVTSRGPCTTMEFAVALVEQLYGKERADEVS 109 (121)
Q Consensus 77 g~i~T~~g~~~~~~~a~~li~~~~~~~~a~~v~ 109 (121)
..+++.-++..+.++++.+++.+.-.+.++++.
T Consensus 49 ~lLv~~y~~~~A~~vt~~il~~in~~~lae~L~ 81 (82)
T cd08321 49 DKMVQFYGEEYAVEVTVKILRKMNQNELAEKLQ 81 (82)
T ss_pred HHHHHHcChhHHHHHHHHHHHHhcchHHHHHHh
Confidence 345566666777888888888777777776653
No 158
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=20.04 E-value=62 Score=21.03 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=10.8
Q ss_pred hCCCeEEEechhH
Q 038375 24 SDGRLNAVICASP 36 (121)
Q Consensus 24 ~~~~~i~aic~g~ 36 (121)
.++++|+++|.|-
T Consensus 13 ~~~~~i~GVCaGi 25 (118)
T PRK10697 13 PQQGMVKGVCAGI 25 (118)
T ss_pred CCCCEEeeeHHHH
Confidence 4678999999984
Done!