BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038377
         (979 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
           Domain Containing 1c Protein
 pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
           Domain Containing 1c Protein
          Length = 392

 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 65/107 (60%), Gaps = 1/107 (0%)

Query: 867 PILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFI 926
           PI DQ+++++   + RL EE+ +   T  Q +G+A+++PAG  +Q++N  SC+ V  DF+
Sbjct: 268 PIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFV 327

Query: 927 SPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIR 973
           SPE++ E   L  E+RLL  +     +K +V  +  +A+   V+ ++
Sbjct: 328 SPEHLVESFHLTQELRLLKEEINYD-DKLQVKNILYHAVKEMVRALK 373



 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 14/179 (7%)

Query: 545 FQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNSSLKSENDGGAVEETGCSDWFEV 604
           F++ W++GQP +V  V +  +   W          K  S+  +      +   C D    
Sbjct: 27  FKECWKQGQPAVVSGVHKKMNISLW----------KAESISLDFGDHQADLLNCKDSIIS 76

Query: 605 EIGVKQLFLG---SLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYM 661
              VK+ + G     +  K+       LKLK W S   F+   PA Y ++++ LPLPEY 
Sbjct: 77  NANVKEFWDGFEEVSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYC 136

Query: 662 DPKTGVLNIATKLPQNFPTSDLGPSVYISYSSGEELAQADSVTKLCYDLCDVVNVLAHT 720
           +P+ G  N+A+ LP  F   DLGP +  +Y            T L  ++ DVVN+L + 
Sbjct: 137 NPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNILVYV 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,542,737
Number of Sequences: 62578
Number of extensions: 1194871
Number of successful extensions: 2420
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2413
Number of HSP's gapped (non-prelim): 6
length of query: 979
length of database: 14,973,337
effective HSP length: 108
effective length of query: 871
effective length of database: 8,214,913
effective search space: 7155189223
effective search space used: 7155189223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)