Query 038377
Match_columns 979
No_of_seqs 193 out of 258
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 10:23:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 7E-174 2E-178 1494.7 30.2 632 219-978 227-885 (889)
2 PF08879 WRC: WRC; InterPro: 99.6 1.5E-16 3.4E-21 129.6 3.0 45 7-51 1-45 (46)
3 PF10497 zf-4CXXC_R1: Zinc-fin 99.4 4.2E-14 9.1E-19 133.8 4.1 69 218-286 4-85 (105)
4 PF02373 JmjC: JmjC domain, hy 99.2 4E-12 8.7E-17 117.8 2.3 72 852-925 30-114 (114)
5 PF13621 Cupin_8: Cupin-like d 98.7 3.5E-09 7.5E-14 109.7 0.4 40 890-929 207-249 (251)
6 smart00558 JmjC A domain famil 96.8 0.00052 1.1E-08 57.8 1.0 54 650-721 3-56 (57)
7 KOG2131 Uncharacterized conser 95.2 0.016 3.5E-07 65.8 3.9 61 885-945 261-322 (427)
8 cd02340 ZZ_NBR1_like Zinc fing 94.5 0.02 4.3E-07 46.8 1.7 28 353-380 3-31 (43)
9 cd02335 ZZ_ADA2 Zinc finger, Z 93.5 0.04 8.7E-07 46.0 1.6 28 353-380 3-32 (49)
10 cd02249 ZZ Zinc finger, ZZ typ 93.3 0.045 9.7E-07 45.0 1.7 30 353-382 3-33 (46)
11 cd02339 ZZ_Mind_bomb Zinc fing 92.5 0.07 1.5E-06 44.2 1.7 28 353-380 3-32 (45)
12 COG1917 Uncharacterized conser 92.3 0.047 1E-06 52.9 0.5 49 865-918 60-108 (131)
13 PF07883 Cupin_2: Cupin domain 92.1 0.067 1.4E-06 45.6 1.2 26 893-918 38-63 (71)
14 cd02344 ZZ_HERC2 Zinc finger, 90.9 0.13 2.9E-06 42.7 1.7 30 352-381 1-33 (45)
15 KOG2130 Phosphatidylserine-spe 90.3 0.14 3.1E-06 57.5 1.8 66 865-932 235-303 (407)
16 PF00569 ZZ: Zinc finger, ZZ t 90.2 0.17 3.8E-06 41.7 1.8 33 350-382 3-38 (46)
17 cd02345 ZZ_dah Zinc finger, ZZ 89.9 0.18 3.8E-06 42.4 1.6 30 353-382 3-34 (49)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 89.1 0.22 4.8E-06 41.8 1.6 29 353-381 3-35 (48)
19 COG0662 {ManC} Mannose-6-phosp 88.7 0.24 5.3E-06 48.4 1.9 42 891-932 74-115 (127)
20 smart00291 ZnF_ZZ Zinc-binding 88.7 0.26 5.7E-06 40.2 1.8 33 353-385 7-40 (44)
21 cd02338 ZZ_PCMF_like Zinc fing 85.6 0.44 9.5E-06 40.0 1.4 29 352-380 1-32 (49)
22 TIGR03214 ura-cupin putative a 85.4 0.4 8.8E-06 52.6 1.5 30 887-916 213-242 (260)
23 PHA02926 zinc finger-like prot 84.7 0.29 6.3E-06 53.0 -0.0 52 219-271 168-228 (242)
24 cd02334 ZZ_dystrophin Zinc fin 84.5 0.57 1.2E-05 39.6 1.7 31 353-383 3-35 (49)
25 cd02337 ZZ_CBP Zinc finger, ZZ 84.4 0.52 1.1E-05 38.4 1.3 28 353-381 3-31 (41)
26 PF13639 zf-RING_2: Ring finge 84.0 0.33 7.2E-06 39.0 0.1 30 233-269 15-44 (44)
27 KOG1356 Putative transcription 81.4 0.37 8.1E-06 59.9 -0.8 187 6-202 228-425 (889)
28 cd02343 ZZ_EF Zinc finger, ZZ 80.8 0.95 2.1E-05 38.3 1.6 29 353-381 3-32 (48)
29 KOG3899 Uncharacterized conser 80.3 0.69 1.5E-05 51.6 0.8 114 162-280 203-368 (381)
30 PRK09943 DNA-binding transcrip 79.7 1.1 2.3E-05 46.3 2.0 59 865-929 125-183 (185)
31 cd00162 RING RING-finger (Real 76.7 1.3 2.8E-05 33.9 1.2 42 224-270 2-43 (45)
32 TIGR00218 manA mannose-6-phosp 76.3 1.3 2.8E-05 49.5 1.5 15 897-911 156-170 (302)
33 PF07649 C1_3: C1-like domain; 76.1 1.3 2.8E-05 33.3 1.0 26 353-378 3-29 (30)
34 PRK13290 ectC L-ectoine syntha 75.4 1.5 3.2E-05 43.5 1.4 37 891-929 74-110 (125)
35 PHA02929 N1R/p28-like protein; 74.3 1.5 3.3E-05 48.0 1.4 46 220-271 173-225 (238)
36 cd02342 ZZ_UBA_plant Zinc fing 74.1 1.9 4.2E-05 35.8 1.6 29 353-381 3-33 (43)
37 PRK15131 mannose-6-phosphate i 73.6 1.6 3.6E-05 50.7 1.5 15 897-911 242-256 (389)
38 COG4101 Predicted mannose-6-ph 73.3 1.3 2.7E-05 44.2 0.4 50 865-918 63-114 (142)
39 PF01050 MannoseP_isomer: Mann 73.2 1.8 3.9E-05 44.3 1.5 22 897-918 107-128 (151)
40 PLN03208 E3 ubiquitin-protein 72.8 2.4 5.1E-05 45.3 2.3 58 211-271 8-77 (193)
41 PF13923 zf-C3HC4_2: Zinc fing 70.5 2.5 5.4E-05 33.2 1.4 31 232-268 9-39 (39)
42 KOG4582 Uncharacterized conser 69.0 2.4 5.2E-05 47.4 1.4 31 352-382 153-186 (278)
43 COG1482 ManA Phosphomannose is 67.8 2.6 5.7E-05 47.9 1.4 19 894-912 160-178 (312)
44 PRK04190 glucose-6-phosphate i 67.8 3.6 7.8E-05 43.7 2.4 29 890-918 118-146 (191)
45 KOG0317 Predicted E3 ubiquitin 66.2 3 6.4E-05 46.8 1.4 46 220-272 238-283 (293)
46 PLN02288 mannose-6-phosphate i 63.6 3.5 7.5E-05 48.3 1.4 15 897-911 256-270 (394)
47 KOG2508 Predicted phospholipas 62.9 21 0.00046 41.5 7.3 36 543-578 34-72 (437)
48 PF13920 zf-C3HC4_3: Zinc fing 61.8 3.1 6.6E-05 34.4 0.4 44 222-271 3-46 (50)
49 PF12861 zf-Apc11: Anaphase-pr 59.3 5.5 0.00012 37.5 1.7 45 222-270 33-79 (85)
50 TIGR01479 GMP_PMI mannose-1-ph 58.4 4.4 9.4E-05 48.1 1.0 32 887-918 410-441 (468)
51 smart00184 RING Ring finger. E 57.6 4.5 9.7E-05 29.7 0.6 26 238-268 14-39 (39)
52 KOG1039 Predicted E3 ubiquitin 56.7 3.9 8.5E-05 47.1 0.3 88 179-270 122-218 (344)
53 PTZ00194 60S ribosomal protein 56.1 5.8 0.00013 40.6 1.3 42 866-909 19-60 (143)
54 PF00097 zf-C3HC4: Zinc finger 55.9 4 8.6E-05 32.0 0.1 29 236-268 13-41 (41)
55 PF00190 Cupin_1: Cupin; Inte 54.6 7.9 0.00017 38.4 2.0 38 893-930 81-125 (144)
56 TIGR00599 rad18 DNA repair pro 54.2 7.7 0.00017 45.6 2.1 47 220-274 25-72 (397)
57 PF14634 zf-RING_5: zinc-RING 53.7 4.8 0.0001 32.6 0.2 27 238-270 18-44 (44)
58 KOG1280 Uncharacterized conser 53.3 6 0.00013 45.5 1.0 34 347-380 4-40 (381)
59 PRK15460 cpsB mannose-1-phosph 52.9 7.7 0.00017 46.5 1.9 48 886-933 418-465 (478)
60 PF10272 Tmpp129: Putative tra 50.3 9.3 0.0002 44.4 1.9 53 219-271 269-349 (358)
61 TIGR00570 cdk7 CDK-activating 49.1 10 0.00023 43.2 2.0 43 222-271 4-52 (309)
62 PRK01191 rpl24p 50S ribosomal 49.1 8.6 0.00019 38.4 1.2 41 866-908 18-58 (120)
63 PF02041 Auxin_BP: Auxin bindi 48.7 9.5 0.00021 39.5 1.5 41 871-916 75-115 (167)
64 PF12678 zf-rbx1: RING-H2 zinc 48.7 9.2 0.0002 34.4 1.3 41 223-269 32-73 (73)
65 PF13248 zf-ribbon_3: zinc-rib 46.8 9.9 0.00021 28.0 1.0 23 352-374 4-26 (26)
66 KOG0823 Predicted E3 ubiquitin 46.3 6.8 0.00015 42.9 0.1 47 219-270 45-92 (230)
67 PF08007 Cupin_4: Cupin superf 46.2 11 0.00024 42.5 1.8 38 893-930 177-214 (319)
68 smart00835 Cupin_1 Cupin. This 45.5 15 0.00032 36.5 2.3 52 865-916 47-99 (146)
69 PF02938 GAD: GAD domain; Int 44.2 9.1 0.0002 35.9 0.6 40 865-914 54-93 (95)
70 PF10571 UPF0547: Uncharacteri 44.0 14 0.00029 27.7 1.3 22 353-374 3-24 (26)
71 TIGR03214 ura-cupin putative a 43.6 16 0.00034 40.4 2.3 47 866-917 77-123 (260)
72 KOG2583 Ubiquinol cytochrome c 42.4 20 0.00044 42.2 3.1 46 512-558 158-206 (429)
73 PF01238 PMI_typeI: Phosphoman 41.3 9.6 0.00021 44.2 0.3 15 897-911 255-269 (373)
74 KOG0320 Predicted E3 ubiquitin 40.8 16 0.00034 38.8 1.7 43 222-270 132-175 (187)
75 TIGR03404 bicupin_oxalic bicup 39.0 16 0.00035 42.4 1.7 55 891-946 288-342 (367)
76 PF13240 zinc_ribbon_2: zinc-r 38.7 15 0.00034 26.5 0.9 22 353-374 2-23 (23)
77 PF15227 zf-C3HC4_4: zinc fing 37.7 12 0.00025 30.5 0.2 28 239-268 15-42 (42)
78 PRK15457 ethanolamine utilizat 36.9 14 0.00031 40.6 0.7 45 865-914 171-215 (233)
79 COG5114 Histone acetyltransfer 36.8 10 0.00022 43.3 -0.4 28 353-380 8-37 (432)
80 KOG1819 FYVE finger-containing 36.1 31 0.00067 41.4 3.3 58 186-254 867-936 (990)
81 KOG0457 Histone acetyltransfer 36.1 13 0.00029 43.8 0.4 31 350-380 13-46 (438)
82 PRK11171 hypothetical protein; 35.7 20 0.00043 39.7 1.6 30 887-916 96-125 (266)
83 KOG3905 Dynein light intermedi 35.4 16 0.00035 42.2 0.9 24 886-909 289-313 (473)
84 COG5540 RING-finger-containing 33.3 26 0.00056 40.1 2.0 50 216-270 318-369 (374)
85 KOG0311 Predicted E3 ubiquitin 33.3 25 0.00055 40.8 2.0 57 221-282 43-99 (381)
86 smart00154 ZnF_AN1 AN1-like Zi 31.8 29 0.00063 28.1 1.6 29 224-256 1-30 (39)
87 COG0184 RpsO Ribosomal protein 29.9 38 0.00083 32.3 2.2 56 874-955 2-57 (89)
88 smart00504 Ubox Modified RING 29.7 26 0.00056 29.6 1.0 28 238-271 17-44 (63)
89 PRK10371 DNA-binding transcrip 29.3 33 0.00072 38.2 2.1 33 886-918 58-90 (302)
90 PRK13264 3-hydroxyanthranilate 28.9 31 0.00067 36.7 1.6 62 870-933 55-117 (177)
91 TIGR03037 anthran_nbaC 3-hydro 28.4 31 0.00067 36.0 1.5 45 890-934 68-112 (159)
92 TIGR01080 rplX_A_E ribosomal p 28.4 33 0.00072 34.0 1.6 42 866-909 14-55 (114)
93 cd02336 ZZ_RSC8 Zinc finger, Z 28.0 34 0.00075 28.6 1.4 29 353-381 3-32 (45)
94 PF09567 RE_MamI: MamI restric 27.9 24 0.00052 39.3 0.6 26 346-371 76-103 (314)
95 PF05899 Cupin_3: Protein of u 27.6 31 0.00068 30.9 1.2 18 890-909 44-61 (74)
96 PRK11171 hypothetical protein; 27.2 35 0.00077 37.8 1.8 31 886-916 217-247 (266)
97 PF03107 C1_2: C1 domain; Int 26.4 36 0.00078 25.8 1.2 26 353-378 3-29 (30)
98 PF06844 DUF1244: Protein of u 24.9 28 0.00061 31.6 0.4 14 244-257 11-24 (68)
99 PF12852 Cupin_6: Cupin 24.9 40 0.00087 34.6 1.6 20 897-916 60-79 (186)
100 smart00249 PHD PHD zinc finger 23.8 37 0.0008 26.2 0.9 45 223-268 1-47 (47)
101 PRK14892 putative transcriptio 23.6 47 0.001 32.3 1.6 28 346-373 16-51 (99)
102 KOG0978 E3 ubiquitin ligase in 23.4 40 0.00086 42.4 1.4 43 220-268 642-684 (698)
103 PF07282 OrfB_Zn_ribbon: Putat 23.3 65 0.0014 28.2 2.4 24 219-242 26-54 (69)
104 PRK13503 transcriptional activ 23.2 65 0.0014 34.6 2.8 31 887-917 48-78 (278)
105 PF13891 zf-C3Hc3H: Potential 22.5 52 0.0011 29.2 1.6 22 22-43 8-29 (65)
106 COG5219 Uncharacterized conser 22.4 27 0.00058 45.0 -0.3 44 223-270 1471-1520(1525)
107 KOG3795 Uncharacterized conser 21.0 34 0.00075 36.3 0.2 16 235-250 16-33 (230)
108 PF02944 BESS: BESS motif; In 20.1 1.1E+02 0.0025 24.2 2.9 23 306-328 7-29 (37)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=7e-174 Score=1494.70 Aligned_cols=632 Identities=30% Similarity=0.520 Sum_probs=545.1
Q ss_pred ccCCcccccccCC-CceEecCCCCCcccchhhhhhhccCc-HHHHHhhCCCCCCCcccccccCCCCCCchhhhhh-hccc
Q 038377 219 RRRKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDT-QEDVKKACPVCRGTCGCKACSSSQYRDIDYKDLL-KANN 295 (979)
Q Consensus 219 ~~~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~-~edi~~~CP~CRg~CNCk~Clr~~~~~~~~K~~~-~~~~ 295 (979)
|.+.|||||.+.+ ..+-+|++|+-+ ||++|++.|||.+ .++++.+|+||+..|||.+|+...+..++.+-.- .-.+
T Consensus 227 g~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~ 305 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLD 305 (889)
T ss_pred CcchhhhhhcccccceeEEccccCCe-eeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhh
Confidence 7788999999998 468999999988 9999999999997 7999999999999999999999999765432211 1134
Q ss_pred hHHHHHHHH--HHHHHHhhHhhhchhhhhhhHHHHHHhhCCCCCcccchhhhcccCccc-cCCCCcccccccccCccCcc
Q 038377 296 EVDKVLHFH--YLICMLLPIVRQINQDQNVELEIEAKIKGQNPSEVQIQEAEFKYNRLY-CCSCKTSIVDYHRSCASCSY 372 (979)
Q Consensus 296 ~~dk~~h~~--YLL~~LLP~Lkqi~~EQ~~E~EiEAkIqG~~~sei~i~~A~~~~DERv-CDnCkTSIvD~HRSC~~Csy 372 (979)
..+++.++. |+|..++|+|+.++.+|-.+.+.||+|||..+++ ..+.+...++|++ ||+|.|||.|+||+||+|||
T Consensus 306 ~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~-~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~ 384 (889)
T KOG1356|consen 306 LSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTS-KPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSY 384 (889)
T ss_pred HHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCC-CccccccCcCCCccccccccchhhccccCCCccc
Confidence 556788887 9999999999999999999999999999999998 5666777779999 99999999999999999999
Q ss_pred cchhhhHHHhhcCCCCccccccccccCCCCcccccCccccccccccccccCCCCccCCCCCCCCCccCCCCCCcccCCCC
Q 038377 373 TLCLSCCRDILQGSLSGCVRARLCKCPNGRKVCTSGVRILEKKSLRTYKEGYGSTYFDSSAASPSWKAPDGTAGILCPPM 452 (979)
Q Consensus 373 DLCL~CC~ELR~G~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~a~n~dGsI~Cpp~ 452 (979)
++||.||.+||.|.+.-..+ ..+.+-+++..|.+|..-++... +... .... +. +|.+|+|.|-|.
T Consensus 385 ~~~l~~~~~i~~g~l~~~~e-~~~~~~~r~~~~~~g~~~~~~~~--------~s~~-~~~~--~~---~~~ng~~r~l~~ 449 (889)
T KOG1356|consen 385 AICLPWLADLRRGDLKEKEE-CELMLRSRGVKYEHGPDPIEPSL--------SSVS-VDEP--SS---ANENGSLRDLLL 449 (889)
T ss_pred cccchHHHHhhcCCcccchh-HHHHHHHHHHHhhcCcccccccc--------CCCC-CCCC--cc---cccccchhhccc
Confidence 99999999999996665433 23445556666777653333221 0000 1111 11 367799999999
Q ss_pred CCCCCCCccccccccCCCCchHHHHHHHHHHHhccCCcccccCCCCccCccCCCCCcccchhhHHHhhhcCCCCCeeecc
Q 038377 453 EFGGCGDSFLDLRCVFPSCWTKELEINAEQIVGCYELPETIDMSSCCSVCTGMDHEVDGTKQLKVAAIRENSNDNFLFFP 532 (979)
Q Consensus 453 e~GGCG~~~L~Lr~ifp~~wi~~L~~~aee~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~rkaA~Reds~DN~LYcP 532 (979)
..+||+...|.|+|+||..|.+.|+.+||.-+..|-+... +..|. +..+..+.++++|.|+.+.|||||||
T Consensus 450 ~~~g~~~~~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~------l~~~~---~~~~~~~~~~s~~~~~~~cdn~Ll~l 520 (889)
T KOG1356|consen 450 SLAGCLDRGLKLKRILPNILDSIIASVVENKLTSKLSKPP------LRLCR---SSQDGSGLLLSAASHSWLCDNRLLSL 520 (889)
T ss_pred ccCccchhhhhhhhcCchHHHHHHHHHHHhhcccccCCch------hhcCc---cccccccCccccCCCCcCCCCceecC
Confidence 9999999999999999999999999999999988655443 33342 23344567899999999999999999
Q ss_pred CccccccCcHHHHHHHHhcCCCEEEEeccccCCCCCCcchhhhhhhhhcccccCCCCCCceEEeeCCCCceEeechhccc
Q 038377 533 TLMDVQGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLF 612 (979)
Q Consensus 533 ~~~di~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsWeP~~mwr~~~e~~~~~~~~~~~~VkaIDCld~~evei~v~qFF 612 (979)
.+.+++.+||.|||+||++|||||||||++.+++++|+||+|||+|.++...=..-.+.+|.++||++ ++.+||
T Consensus 521 ~~d~~~~~n~~~FQEhWkqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegF 594 (889)
T KOG1356|consen 521 KVDPLNQNNLKHFQEHWKQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGF 594 (889)
T ss_pred ccCccchhHHHHHHHHHhcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhh
Confidence 99889999999999999999999999999999999999999999998865432233345688888888 789999
Q ss_pred ccccCCCCCCCCCccceeecCCCChhhHHHhchhhHHHHHhcCCCCCccCCCCccccccccCCCCCCCCCCCCcchhccc
Q 038377 613 LGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYS 692 (979)
Q Consensus 613 ~Gy~~gr~~~n~wp~mLKLKDWPps~~Fee~LP~h~~eFi~aLP~~EYT~Pr~G~LNLAskLP~~~lkPDLGPK~YIAYG 692 (979)
.||++|+++++|||+|||||||||+++|+++||+||+|||++|||||||| ++|+||||++||.+|++||||||||||||
T Consensus 595 e~~~kr~~~~~g~p~vLKLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG 673 (889)
T KOG1356|consen 595 EGYSKRLKSENGWPEVLKLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYG 673 (889)
T ss_pred cccccCcccccCCeeEEeecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred ccccccCCCCcceeeeeccchhhhhhccCccCCChhhhHHHHHHhhcccCCccccccccchhhhhccCCCCCCCCCcccc
Q 038377 693 SGEELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQLNNIRELMQGHTGQHQTDSVEVAPEQKMANGMGGKSHSDCENK 772 (979)
Q Consensus 693 ~~eElgrgDSVTkLH~DmSDAVNIL~htaev~~~~~q~~~I~kl~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (979)
+++|+|||||||||||||||||||||||++++. ++..|.+++++++..+.
T Consensus 674 ~~~e~gr~~gtTnLH~dvSDaVNILvyv~e~~~---~~~~~~~~~k~~~~~~~--------------------------- 723 (889)
T KOG1356|consen 674 VSTELGRGDGTTNLHLDVSDAVNILVYVGEPPG---QIEQIAKVLKKIQEGDL--------------------------- 723 (889)
T ss_pred ccccccCCCCceeeceehhhhhhheeeeccCCc---hHHhHHHHHHhhhhcch---------------------------
Confidence 999999999999999999999999999999877 55566666666543110
Q ss_pred cccccccccccccccccCccccccCCCCCCCCCCCCCCCccccccCCCCCCccchhhcccccccCCCcchhhhhccccCC
Q 038377 773 EVGLCDVLGEEITRHEAGDLNVRDRNSSHDGDYDTDSDPDSLILGCGTNQNSKKSEKRMHFKDHKNNSNYFIKERLAESC 852 (979)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~ 852 (979)
|+.+ ..+. ....+.+
T Consensus 724 ---------------------------------de~~------------------~~~~--------------~~~~e~~ 738 (889)
T KOG1356|consen 724 ---------------------------------DEIT------------------RSRI--------------SSVSETP 738 (889)
T ss_pred ---------------------------------hhhh------------------hhhc--------------cccccCC
Confidence 0000 0000 0123579
Q ss_pred CccceeeccCCC---------------------CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccc
Q 038377 853 GAQWDVFRREDV---------------------VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQ 911 (979)
Q Consensus 853 GAlWDIFRreDv---------------------~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQ 911 (979)
||||||||+||| +||||||+||||++||+|||||||||||||+|+||||||||||||||
T Consensus 739 GALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQ 818 (889)
T KOG1356|consen 739 GALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQ 818 (889)
T ss_pred cchhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHH
Confidence 999999999999 89999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhccccCCcchHHHHHHHHHhhcCCcccccccchhhhhhHHHHHHHHHHHHHHHhhhc
Q 038377 912 IRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIRELTCA 978 (979)
Q Consensus 912 VRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLEVKkm~l~A~~~AV~ei~~l~~~ 978 (979)
||||+||||||+||||||||.||||||+|||+||++|.++|||||||||+||||++||++|+.++..
T Consensus 819 VrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLqvK~mi~hAVk~Av~~L~~~~s~ 885 (889)
T KOG1356|consen 819 VRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQVKNMIYHAVKDAVGTLKEAESS 885 (889)
T ss_pred hhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999988753
No 2
>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that WRC functions in DNA binding []. ; GO: 0005515 protein binding
Probab=99.62 E-value=1.5e-16 Score=129.59 Aligned_cols=45 Identities=47% Similarity=0.964 Sum_probs=43.4
Q ss_pred CCCCccccccCCCcccccccccCchhhHHHHhhccccCcccCCCC
Q 038377 7 LPDHLRCKRTDGKQWRCNRRVMEDKKLCELHHLQGRHRQNREKVP 51 (979)
Q Consensus 7 ~~~~~rc~rtdgk~wrc~~~~~~~~k~ce~h~~~g~~r~~k~~~~ 51 (979)
+||++||+|+|||+|||+++|+++++|||+|+++|++|+++.+++
T Consensus 1 d~e~~RC~R~DGK~WrC~~~a~~g~~~Ce~H~~~~r~r~~~~~~~ 45 (46)
T PF08879_consen 1 DPEPWRCRRNDGKGWRCSRRALPGYSLCEHHLDRGRSRSRKSKEP 45 (46)
T ss_pred CCccceeeCCCCCccccCCccCCCccHHHHHHHHHhhccCCCCCC
Confidence 689999999999999999999999999999999999999999876
No 3
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=99.45 E-value=4.2e-14 Score=133.83 Aligned_cols=69 Identities=33% Similarity=0.730 Sum_probs=60.2
Q ss_pred cccCCcccccccCC-CceEec------CCC--CCcccchhhhhhhccCcH----HHHHhhCCCCCCCcccccccCCCCCC
Q 038377 218 RRRRKRCHWCRRRG-QSLIKC------SSC--RKLFFCVDCVKEWYFDTQ----EDVKKACPVCRGTCGCKACSSSQYRD 284 (979)
Q Consensus 218 ~~~~~~CHQC~r~d-~~vV~C------~~C--~rk~fC~~CI~~wYp~~~----edi~~~CP~CRg~CNCk~Clr~~~~~ 284 (979)
...+.+||||++++ ...++| ++| -+..||.+||.++|.++. ++..|.||+|||+|||..|++.++..
T Consensus 4 ~~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g~~ 83 (105)
T PF10497_consen 4 SVNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRGWA 83 (105)
T ss_pred CCCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCCCC
Confidence 36788999999999 788999 889 256799999999999963 46779999999999999999999977
Q ss_pred ch
Q 038377 285 ID 286 (979)
Q Consensus 285 ~~ 286 (979)
++
T Consensus 84 PT 85 (105)
T PF10497_consen 84 PT 85 (105)
T ss_pred Cc
Confidence 64
No 4
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.21 E-value=4e-12 Score=117.85 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=56.1
Q ss_pred CCccceeeccCCC-------------CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCcccccccccc
Q 038377 852 CGAQWDVFRREDV-------------VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSC 918 (979)
Q Consensus 852 ~GAlWDIFRreDv-------------~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSC 918 (979)
+..+|-++.+++. .+|+| +..+.+.-.+.. ..+.||+.|+|+|++||+||||+|++|||.|+-.|
T Consensus 30 ~~k~W~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~-l~~~gi~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 30 GSKVWYIVPPEDADKFEKFLRSKESQNCPQF-LDHKNIFVSPEQ-LKKAGIPVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp SEEEEEEE-GGGHHHHHHHHHHHHHHHSTTG-GCTGGEEEGHHH-HHHTTS--EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred cceEeEEechhhhhhHHHHHhhccccccccc-ccccccccceee-eeccCcccccceECCCCEEEECCCceEEEEeCCce
Confidence 4568999998876 57777 666666666656 46799999999999999999999999999999999
Q ss_pred chhhccc
Q 038377 919 VNVVLDF 925 (979)
Q Consensus 919 IKVAlDF 925 (979)
|++|.+|
T Consensus 108 i~~a~Nf 114 (114)
T PF02373_consen 108 ISEAVNF 114 (114)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 9999998
No 5
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=98.69 E-value=3.5e-09 Score=109.67 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=33.2
Q ss_pred cceeEeeecCceeEecCCCccccccc--cc-cchhhccccCCc
Q 038377 890 EPWTFEQHVGEAVIIPAGCPYQIRNL--KS-CVNVVLDFISPE 929 (979)
Q Consensus 890 EpWTF~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 929 (979)
.+|++++.+||++|||+|-.|||+|| .. +|-|...|.+|.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 89999999999999999999999999 76 999999998764
No 6
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.75 E-value=0.00052 Score=57.76 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=43.5
Q ss_pred HHHhcCCCCCccCCCCccccccccCCCCCCCCCCCCcchhcccccccccCCCCcceeeeeccchhhhhhccC
Q 038377 650 EIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSGEELAQADSVTKLCYDLCDVVNVLAHTT 721 (979)
Q Consensus 650 eFi~aLP~~EYT~Pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~eElgrgDSVTkLH~DmSDAVNIL~hta 721 (979)
..+..||+ .+||+.+++.....|+. +|+.+|.. +|+|.+|+|+.|.+|++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~~------~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGMA------GSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeCC------CCccceeEcCCCeEEEEEecC
Confidence 35667777 68999999988888877 66666654 789999999999999887654
No 7
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.24 E-value=0.016 Score=65.79 Aligned_cols=61 Identities=21% Similarity=0.302 Sum_probs=48.8
Q ss_pred HHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHH-HHHHhhcCC
Q 038377 885 EEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQ-LIDEIRLLP 945 (979)
Q Consensus 885 EEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~r-LteEfR~Lp 945 (979)
.++.+.+.++.|..||+||+|.|==|||-||-..|.|-..++--=|+..=.+ |-+++-.+.
T Consensus 261 d~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~ 322 (427)
T KOG2131|consen 261 DLFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALA 322 (427)
T ss_pred cccccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhh
Confidence 4567788999999999999999999999999999999999987777665444 333444443
No 8
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=94.55 E-value=0.02 Score=46.80 Aligned_cols=28 Identities=39% Similarity=0.930 Sum_probs=26.7
Q ss_pred cCCCCcccccccccCccC-cccchhhhHH
Q 038377 353 CCSCKTSIVDYHRSCASC-SYTLCLSCCR 380 (979)
Q Consensus 353 CDnCkTSIvD~HRSC~~C-syDLCL~CC~ 380 (979)
||.|++.|..+.-.|..| .||||..|-.
T Consensus 3 Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 3 CDGCQGPIVGVRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCcCcCCeEECCCCCCccchHHhhC
Confidence 999999999999999999 7999999975
No 9
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=93.47 E-value=0.04 Score=45.96 Aligned_cols=28 Identities=36% Similarity=0.972 Sum_probs=26.9
Q ss_pred cCCCCccccc-ccccCccC-cccchhhhHH
Q 038377 353 CCSCKTSIVD-YHRSCASC-SYTLCLSCCR 380 (979)
Q Consensus 353 CDnCkTSIvD-~HRSC~~C-syDLCL~CC~ 380 (979)
||+|...|.. ++-.|..| .||||+.|-.
T Consensus 3 Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 3 CDYCSKDITGTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence 9999999999 99999999 9999999987
No 10
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=93.34 E-value=0.045 Score=44.95 Aligned_cols=30 Identities=33% Similarity=0.796 Sum_probs=28.0
Q ss_pred cCCCCcccccccccCccCc-ccchhhhHHHh
Q 038377 353 CCSCKTSIVDYHRSCASCS-YTLCLSCCRDI 382 (979)
Q Consensus 353 CDnCkTSIvD~HRSC~~Cs-yDLCL~CC~EL 382 (979)
||.|..+|...+-.|..|. ||||..|-.+-
T Consensus 3 C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 3 CDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 9999999999999999998 99999998744
No 11
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=92.51 E-value=0.07 Score=44.17 Aligned_cols=28 Identities=36% Similarity=1.089 Sum_probs=26.4
Q ss_pred cCCCC-cccccccccCccC-cccchhhhHH
Q 038377 353 CCSCK-TSIVDYHRSCASC-SYTLCLSCCR 380 (979)
Q Consensus 353 CDnCk-TSIvD~HRSC~~C-syDLCL~CC~ 380 (979)
||.|+ .+|+-+.-.|..| .||||..|-.
T Consensus 3 Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 3 CDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 99999 7899999999999 7999999987
No 12
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=92.31 E-value=0.047 Score=52.94 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=41.1
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCcccccccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSC 918 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSC 918 (979)
.||-|+|.+|..+-.- +|.++.=+++=+.||.||||||.+|-+.|..+.
T Consensus 60 ~hp~~~~~~~Vl~G~~-----~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 60 THPLGEQTIYVLEGEG-----TVQLEGEKKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred cCCCcceEEEEEecEE-----EEEecCCceEecCCCEEEECCCCeeeeccCCCC
Confidence 7898899999887654 455555566668999999999999999999998
No 13
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.10 E-value=0.067 Score=45.60 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=21.8
Q ss_pred eEeeecCceeEecCCCcccccccccc
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKSC 918 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkSC 918 (979)
++.=..||+++||||++|+++|..+-
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 44447899999999999999998753
No 14
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=90.95 E-value=0.13 Score=42.71 Aligned_cols=30 Identities=23% Similarity=0.784 Sum_probs=26.8
Q ss_pred c-cCCCCc-ccccccccCccCc-ccchhhhHHH
Q 038377 352 Y-CCSCKT-SIVDYHRSCASCS-YTLCLSCCRD 381 (979)
Q Consensus 352 v-CDnCkT-SIvD~HRSC~~Cs-yDLCL~CC~E 381 (979)
| ||.|.+ +|+-..-.|..|. ||||..|-..
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 5 999985 7999999999997 9999999765
No 15
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=90.26 E-value=0.14 Score=57.47 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=54.2
Q ss_pred CCCCcCcccccCHhhHHHH---HHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchH
Q 038377 865 VHPILDQNFFLDATHKMRL---KEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVT 932 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kL---kEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 932 (979)
.+|.---+||-|-.-+-+| -+|| .|=...|.+||.||+|.|==|=|-||--.|-|...|+|=||.+
T Consensus 235 ~~~de~itwf~~~y~rt~~Pswp~E~--kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 235 KQPDEIITWFSTIYPRTQLPSWPDEY--KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred CCCcceechhhhccccccCCCCcccc--CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 3344445677777777664 3455 4778899999999999999999999999999999999999965
No 16
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=90.16 E-value=0.17 Score=41.67 Aligned_cols=33 Identities=33% Similarity=0.802 Sum_probs=25.8
Q ss_pred ccc-cCCCCc-ccccccccCccCc-ccchhhhHHHh
Q 038377 350 RLY-CCSCKT-SIVDYHRSCASCS-YTLCLSCCRDI 382 (979)
Q Consensus 350 ERv-CDnCkT-SIvD~HRSC~~Cs-yDLCL~CC~EL 382 (979)
..+ ||.|++ +|.-..-.|..|. ||||..|-.+-
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g 38 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKG 38 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH-
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCc
Confidence 456 999999 9999999999997 99999998763
No 17
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=89.92 E-value=0.18 Score=42.35 Aligned_cols=30 Identities=33% Similarity=0.955 Sum_probs=27.2
Q ss_pred cCCCCc-ccccccccCccC-cccchhhhHHHh
Q 038377 353 CCSCKT-SIVDYHRSCASC-SYTLCLSCCRDI 382 (979)
Q Consensus 353 CDnCkT-SIvD~HRSC~~C-syDLCL~CC~EL 382 (979)
||+|.. .|.-++-.|..| .||||+.|-..-
T Consensus 3 C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~ 34 (49)
T cd02345 3 CSACRKQDISGIRFPCQVCRDYSLCLGCYTKG 34 (49)
T ss_pred CCCCCCCCceEeeEECCCCCCcCchHHHHhCC
Confidence 999998 999999999999 699999998743
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=89.09 E-value=0.22 Score=41.85 Aligned_cols=29 Identities=31% Similarity=0.850 Sum_probs=27.2
Q ss_pred cCCCCc-ccccccccCccCc---ccchhhhHHH
Q 038377 353 CCSCKT-SIVDYHRSCASCS---YTLCLSCCRD 381 (979)
Q Consensus 353 CDnCkT-SIvD~HRSC~~Cs---yDLCL~CC~E 381 (979)
||+|.. +|+-+.-.|..|. ||||..|-..
T Consensus 3 Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~ 35 (48)
T cd02341 3 CDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK 35 (48)
T ss_pred CCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence 999998 9999999999998 9999999874
No 19
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.72 E-value=0.24 Score=48.40 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=30.7
Q ss_pred ceeEeeecCceeEecCCCccccccccccchhhccccCCcchH
Q 038377 891 PWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVT 932 (979)
Q Consensus 891 pWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 932 (979)
.=.|+=+.||+|+||||.||.++|.-+.-=+.++=-+|+..+
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~~~ 115 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYLG 115 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCcCC
Confidence 556666899999999999999999998433334444555543
No 20
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=88.71 E-value=0.26 Score=40.21 Aligned_cols=33 Identities=36% Similarity=0.821 Sum_probs=29.2
Q ss_pred cCCCCcccccccccCccC-cccchhhhHHHhhcC
Q 038377 353 CCSCKTSIVDYHRSCASC-SYTLCLSCCRDILQG 385 (979)
Q Consensus 353 CDnCkTSIvD~HRSC~~C-syDLCL~CC~ELR~G 385 (979)
||.|...|....-.|..| .||||..|-.+-+.+
T Consensus 7 C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 7 CDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred CCCCCCCCcCCEEECCCCCCccchHHHHhCcCcC
Confidence 999999999999999999 899999998865443
No 21
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=85.56 E-value=0.44 Score=39.97 Aligned_cols=29 Identities=28% Similarity=0.832 Sum_probs=26.4
Q ss_pred c-cCCCC-cccccccccCccC-cccchhhhHH
Q 038377 352 Y-CCSCK-TSIVDYHRSCASC-SYTLCLSCCR 380 (979)
Q Consensus 352 v-CDnCk-TSIvD~HRSC~~C-syDLCL~CC~ 380 (979)
| ||.|+ .+|.-..-.|..| .||||+.|-.
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~ 32 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYD 32 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHh
Confidence 5 99999 8999988889988 7999999987
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=85.43 E-value=0.4 Score=52.57 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=24.1
Q ss_pred hCccceeEeeecCceeEecCCCcccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
|.+..=..+=..||+|||||||||+..|.=
T Consensus 213 ~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G 242 (260)
T TIGR03214 213 YNLDNNWVPVEAGDYIWMGAYCPQACYAGG 242 (260)
T ss_pred EEECCEEEEecCCCEEEECCCCCEEEEecC
Confidence 445555556678999999999999999974
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=84.66 E-value=0.29 Score=52.95 Aligned_cols=52 Identities=25% Similarity=0.698 Sum_probs=34.6
Q ss_pred ccCCcccccccCC--C------ceEecCCCCCcccchhhhhhhccCc-HHHHHhhCCCCCCC
Q 038377 219 RRRKRCHWCRRRG--Q------SLIKCSSCRKLFFCVDCVKEWYFDT-QEDVKKACPVCRGT 271 (979)
Q Consensus 219 ~~~~~CHQC~r~d--~------~vV~C~~C~rk~fC~~CI~~wYp~~-~edi~~~CP~CRg~ 271 (979)
.+-..|-=|+..- . +.-.=.+|+ ..||..||++|-..- ...+...||.||..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-HIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-chHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 3446788887531 1 111123576 679999999998753 33577889999974
No 24
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=84.48 E-value=0.57 Score=39.58 Aligned_cols=31 Identities=35% Similarity=0.846 Sum_probs=26.8
Q ss_pred cCCCCc-ccccccccCccC-cccchhhhHHHhh
Q 038377 353 CCSCKT-SIVDYHRSCASC-SYTLCLSCCRDIL 383 (979)
Q Consensus 353 CDnCkT-SIvD~HRSC~~C-syDLCL~CC~ELR 383 (979)
||.|+. +|.-+.-.|..| .||||..|-..=+
T Consensus 3 Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~ 35 (49)
T cd02334 3 CNICKEFPITGFRYRCLKCFNYDLCQSCFFSGR 35 (49)
T ss_pred CCCCCCCCceeeeEECCCCCCcCchHHHHhCCC
Confidence 999995 799999999988 6999999987533
No 25
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=84.44 E-value=0.52 Score=38.38 Aligned_cols=28 Identities=36% Similarity=1.036 Sum_probs=24.5
Q ss_pred cCCCCcccccccccCccC-cccchhhhHHH
Q 038377 353 CCSCKTSIVDYHRSCASC-SYTLCLSCCRD 381 (979)
Q Consensus 353 CDnCkTSIvD~HRSC~~C-syDLCL~CC~E 381 (979)
||.|.. |+-..+.|..| .||||..|-..
T Consensus 3 C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 3 CNECKH-HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred CCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence 999988 56699999999 89999999764
No 26
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=84.04 E-value=0.33 Score=38.96 Aligned_cols=30 Identities=40% Similarity=1.037 Sum_probs=22.2
Q ss_pred ceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCC
Q 038377 233 SLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCR 269 (979)
Q Consensus 233 ~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CR 269 (979)
.++... |+ ..||.+||..|.-. ...||+||
T Consensus 15 ~~~~l~-C~-H~fh~~Ci~~~~~~-----~~~CP~CR 44 (44)
T PF13639_consen 15 KVVKLP-CG-HVFHRSCIKEWLKR-----NNSCPVCR 44 (44)
T ss_dssp CEEEET-TS-EEEEHHHHHHHHHH-----SSB-TTTH
T ss_pred eEEEcc-CC-CeeCHHHHHHHHHh-----CCcCCccC
Confidence 455544 86 78999999999844 24999997
No 27
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=81.37 E-value=0.37 Score=59.85 Aligned_cols=187 Identities=19% Similarity=0.145 Sum_probs=101.1
Q ss_pred CCCCCccccccCCC-cccccccccCchhhHHHHhhccccCcccCCCCchhHHHHHhhhhhhhh----hHHH-HHHHHhhh
Q 038377 6 DLPDHLRCKRTDGK-QWRCNRRVMEDKKLCELHHLQGRHRQNREKVPESLKIQRKHKKIFKVQ----QRTE-IRARKSKK 79 (979)
Q Consensus 6 ~~~~~~rc~rtdgk-~wrc~~~~~~~~k~ce~h~~~g~~r~~k~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~ 79 (979)
..+---+|-+|+++ .|||.+-... ..++.+++.. .|.++..+-+.-.+-|-+-++..-- -.++ ++. -++-
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r~~~--p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~-~~al 303 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFG-VCLDCYRKWY--PRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIP-GSAL 303 (889)
T ss_pred cchhhhhhcccccceeEEccccCCe-eeecchhhcc--ccchHhHhhhhhhHHHHhcCCccccchhhcccccccc-hhhh
Confidence 34445689999998 9999999998 7777777664 3344443333323333222222100 0111 110 0000
Q ss_pred hhhhhhhccccchhhHHHHHHHhhhhccchhHHHHHH--HHHHHHHHHhh--cCCCCccccccCCCCCCCCC-ccchhhc
Q 038377 80 LKRKKKKRVIGESEALDEALKKMKLKRGDLQLELIRM--VLKREVEKRKR--QKNFDFEDEENCDNSNYSDS-DRELTRE 154 (979)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~r~~~k~k~--~~~~~~~~~~~~~~~~~~~~-~~~~~r~ 154 (979)
..+-.+...+-+-.........++..++..++|...+ |..++.+. |- .+.+. +|--.++ -.++ -++|+|.
T Consensus 304 ~~~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~-~~~~~~~~~-~e~~~~~---~~~~si~~l~r~ 378 (889)
T KOG1356|consen 304 LDLSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTS-KPPVTQANP-EEPLYCD---HCATSIGDLKRS 378 (889)
T ss_pred hhHHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCC-CccccccCc-CCCcccc---ccccchhhcccc
Confidence 0000010100000112224556777888888888887 44444443 10 00010 0000011 1122 3689999
Q ss_pred CCCceeeeccCCCCCCCccceEeeccccccccccccccCCCccCCCcc
Q 038377 155 LPNGLMAISSTNSDNAGTSCAVKIGAEAAAVNRRRFRSKNIEPMPVGT 202 (979)
Q Consensus 155 lpng~m~is~~~~~~~~~~~~~kvg~~~~~~~~r~~rskn~ep~~~~~ 202 (979)
.|++-|+|+-..-..+.+. +++.+.+-.-.+++.++..+.+|.++.+
T Consensus 379 cP~~s~~~~l~~~~~i~~g-~l~~~~e~~~~~~~r~~~~~~g~~~~~~ 425 (889)
T KOG1356|consen 379 CPDSSYAICLPWLADLRRG-DLKEKEECELMLRSRGVKYEHGPDPIEP 425 (889)
T ss_pred CCCccccccchHHHHhhcC-CcccchhHHHHHHHHHHHhhcCcccccc
Confidence 9999999972233334444 8888888888899999999999888877
No 28
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=80.81 E-value=0.95 Score=38.30 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=24.9
Q ss_pred cCCCCcccccccccCccC-cccchhhhHHH
Q 038377 353 CCSCKTSIVDYHRSCASC-SYTLCLSCCRD 381 (979)
Q Consensus 353 CDnCkTSIvD~HRSC~~C-syDLCL~CC~E 381 (979)
||.|...|.-+.-.|-.| .||||..|-..
T Consensus 3 CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 3 CDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 999999888887788888 59999999763
No 29
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.29 E-value=0.69 Score=51.64 Aligned_cols=114 Identities=19% Similarity=0.471 Sum_probs=64.5
Q ss_pred eccCCCCCCCccceEeecccccccc-------ccccc-cCCCccCCCcc---ee---------eeecc----ccchhhhc
Q 038377 162 ISSTNSDNAGTSCAVKIGAEAAAVN-------RRRFR-SKNIEPMPVGT---LQ---------VVPYK----RDVVSLRR 217 (979)
Q Consensus 162 is~~~~~~~~~~~~~kvg~~~~~~~-------~r~~r-skn~ep~~~~~---~~---------Vv~~~----~d~~~~rk 217 (979)
|||.+.+-.--...|||.+-.+.++ +-+|| ..|+-.+||.- ++ |..|+ .|-..-+
T Consensus 203 ls~qD~n~~iq~i~I~V~~~~~~Vt~F~I~~~~~~~r~l~~~~~~pi~vp~~i~~~~~~~~~~~~~f~~~ia~n~v~~~- 281 (381)
T KOG3899|consen 203 LSNQDENERIQSIFIKVSFRPAYVTPFTITLRQDYYRQLNEILEVPIFVPPHINVPLTFMEELKEDFIQRIASNTVTHR- 281 (381)
T ss_pred CCCcccCcceeEEEEEEecCCCcccceEEEeccHHHHhHHhhcccceecCCcccccHHHHHHHHHHHHHHHhcCCCCcc-
Confidence 4554555555566778875444433 34888 66777666542 00 00110 0001111
Q ss_pred cccCCcccccccCCC-------------------ceEecCCCC-CcccchhhhhhhccCcHH--------HHHhhCCCCC
Q 038377 218 RRRRKRCHWCRRRGQ-------------------SLIKCSSCR-KLFFCVDCVKEWYFDTQE--------DVKKACPVCR 269 (979)
Q Consensus 218 ~~~~~~CHQC~r~d~-------------------~vV~C~~C~-rk~fC~~CI~~wYp~~~e--------di~~~CP~CR 269 (979)
..+..+|--|+.++. .-..|++|= |-..|.+|+.+|+-.-.+ +=...||.||
T Consensus 282 ~~~sekcfac~~~e~~~ki~~~c~~~~~~~~~~~~ga~c~nc~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr 361 (381)
T KOG3899|consen 282 VKASEKCFACGTEENMVKIERSCDGQEQRVFFHDIGAPCENCICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCR 361 (381)
T ss_pred cchhhhhHhhccCCCchhhhhcccchhhcccccccCCcccccccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchh
Confidence 245567888876541 123688887 668999999999876322 2345788888
Q ss_pred CCcccccccCC
Q 038377 270 GTCGCKACSSS 280 (979)
Q Consensus 270 g~CNCk~Clr~ 280 (979)
.+ .|.+.
T Consensus 362 ~~----fci~d 368 (381)
T KOG3899|consen 362 KN----FCIRD 368 (381)
T ss_pred hc----eEEee
Confidence 74 45544
No 30
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=79.67 E-value=1.1 Score=46.27 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=45.3
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
+|| +++.+|+-.-.- ++-|..=++.-..||.++||||.||..+|..+.-=+++-+++|-
T Consensus 125 ~h~-~~E~~~Vl~G~~-----~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 125 KHQ-GEEIGTVLEGEI-----VLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred ccC-CcEEEEEEEeEE-----EEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 344 356677655544 56677778888999999999999999999877766777777774
No 31
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=76.72 E-value=1.3 Score=33.87 Aligned_cols=42 Identities=29% Similarity=0.808 Sum_probs=27.6
Q ss_pred ccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 224 CHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 224 CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
|--|...-...+.-..|+ ..||..|+..|+.. ....||.|+.
T Consensus 2 C~iC~~~~~~~~~~~~C~-H~~c~~C~~~~~~~----~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCG-HVFCRSCIDKWLKS----GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCC-ChhcHHHHHHHHHh----CcCCCCCCCC
Confidence 444443322344455687 56999999999764 3456999985
No 32
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=76.30 E-value=1.3 Score=49.53 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=13.8
Q ss_pred ecCceeEecCCCccc
Q 038377 897 HVGEAVIIPAGCPYQ 911 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQ 911 (979)
+.||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 579999999999995
No 33
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=76.14 E-value=1.3 Score=33.33 Aligned_cols=26 Identities=27% Similarity=0.833 Sum_probs=12.8
Q ss_pred cCCCCccccc-ccccCccCcccchhhh
Q 038377 353 CCSCKTSIVD-YHRSCASCSYTLCLSC 378 (979)
Q Consensus 353 CDnCkTSIvD-~HRSC~~CsyDLCL~C 378 (979)
|+.|+.+|.. +.-+|+.|.|+|.+.|
T Consensus 3 C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 3 CDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp -TTTS----S--EEE-TTT-----HHH
T ss_pred CCcCCCcCCCCceEECccCCCccChhc
Confidence 9999999998 8888999999999887
No 34
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=75.41 E-value=1.5 Score=43.50 Aligned_cols=37 Identities=11% Similarity=-0.018 Sum_probs=26.5
Q ss_pred ceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 891 PWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 891 pWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
.=++.=..||+++||||-||+.+|...|.=++ -++|.
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~--v~tP~ 110 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHYLRAGEDMRLVC--VFNPP 110 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEEEEcCCCEEEEE--EECCC
Confidence 34455578999999999999999985544333 35554
No 35
>PHA02929 N1R/p28-like protein; Provisional
Probab=74.32 E-value=1.5 Score=48.01 Aligned_cols=46 Identities=33% Similarity=0.881 Sum_probs=32.0
Q ss_pred cCCcccccccCC--C-----ceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRG--Q-----SLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d--~-----~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|-=|+-.- . ++..=..|+ ..||.+||.+|... ...||+||..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-H~FC~~CI~~Wl~~-----~~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-HVFCIECIDIWKKE-----KNTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-CcccHHHHHHHHhc-----CCCCCCCCCE
Confidence 346788887641 1 123335676 67999999999753 4589999974
No 36
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=74.13 E-value=1.9 Score=35.78 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=25.6
Q ss_pred cCCCC-cccccccccCccC-cccchhhhHHH
Q 038377 353 CCSCK-TSIVDYHRSCASC-SYTLCLSCCRD 381 (979)
Q Consensus 353 CDnCk-TSIvD~HRSC~~C-syDLCL~CC~E 381 (979)
||.|. ++|+-+--.|..| .||||-.|-.+
T Consensus 3 CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 3 CDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 99999 5999999999877 79999999764
No 37
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=73.59 E-value=1.6 Score=50.74 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=14.1
Q ss_pred ecCceeEecCCCccc
Q 038377 897 HVGEAVIIPAGCPYQ 911 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQ 911 (979)
++|||+|||||.||=
T Consensus 242 ~pGeaifipAg~~HA 256 (389)
T PRK15131 242 NPGEAMFLFAETPHA 256 (389)
T ss_pred CCCCEEEeCCCCCeE
Confidence 689999999999996
No 38
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=73.25 E-value=1.3 Score=44.17 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=32.4
Q ss_pred CCCCcCccccc-CHhhHHHHHHHhCcc-ceeEeeecCceeEecCCCcccccccccc
Q 038377 865 VHPILDQNFFL-DATHKMRLKEEFEIE-PWTFEQHVGEAVIIPAGCPYQIRNLKSC 918 (979)
Q Consensus 865 ~hPIHDQ~fYL-t~ehk~kLkEEyGVE-pWTF~Q~lGEAVFIPAGCPHQVRNLkSC 918 (979)
.|-=|...+|. +-+-+.. ||=. --+.+-..||..+||+|.|||--||.+=
T Consensus 63 ~H~~hEtaIYvlsG~ah~w----~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~e 114 (142)
T COG4101 63 LHEEHETAIYVLSGEAHTW----YGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTE 114 (142)
T ss_pred ccccccEEEEEEeceeeee----eccceeeeEEecCCCeEEcCCCCCCcccccCCC
Confidence 56666766664 3222211 2210 1255668999999999999999999743
No 39
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=73.23 E-value=1.8 Score=44.31 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.3
Q ss_pred ecCceeEecCCCcccccccccc
Q 038377 897 HVGEAVIIPAGCPYQIRNLKSC 918 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQVRNLkSC 918 (979)
..||.||||+|+.|++.|.-+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5699999999999999997643
No 40
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=72.84 E-value=2.4 Score=45.28 Aligned_cols=58 Identities=22% Similarity=0.689 Sum_probs=35.8
Q ss_pred cchhhhccccCCcccccccCC-CceEecCCCCCcccchhhhhhhccC---cHHH--------HHhhCCCCCCC
Q 038377 211 DVVSLRRRRRRKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFD---TQED--------VKKACPVCRGT 271 (979)
Q Consensus 211 d~~~~rk~~~~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~---~~ed--------i~~~CP~CRg~ 271 (979)
|.....+.+....|.=|...- ..++ +.|+ ..||..||.+|.-- ..+. -...||+||..
T Consensus 8 ~~~~~~~~~~~~~CpICld~~~dPVv--T~CG-H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 8 DDTTLVDSGGDFDCNICLDQVRDPVV--TLCG-HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred ccceeccCCCccCCccCCCcCCCcEE--cCCC-chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 333344445556788887644 3333 6788 68999999999421 1111 13579999874
No 41
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=70.54 E-value=2.5 Score=33.24 Aligned_cols=31 Identities=26% Similarity=0.857 Sum_probs=23.7
Q ss_pred CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCC
Q 038377 232 QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVC 268 (979)
Q Consensus 232 ~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~C 268 (979)
...+.-..|+ ..||.+||.+|... . ..||+|
T Consensus 9 ~~~~~~~~CG-H~fC~~C~~~~~~~-~----~~CP~C 39 (39)
T PF13923_consen 9 RDPVVVTPCG-HSFCKECIEKYLEK-N----PKCPVC 39 (39)
T ss_dssp SSEEEECTTS-EEEEHHHHHHHHHC-T----SB-TTT
T ss_pred cCcCEECCCC-CchhHHHHHHHHHC-c----CCCcCC
Confidence 4456778898 66999999999766 2 789987
No 42
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=68.96 E-value=2.4 Score=47.37 Aligned_cols=31 Identities=32% Similarity=0.772 Sum_probs=27.7
Q ss_pred c-cCCCCc-ccccccccCccC-cccchhhhHHHh
Q 038377 352 Y-CCSCKT-SIVDYHRSCASC-SYTLCLSCCRDI 382 (979)
Q Consensus 352 v-CDnCkT-SIvD~HRSC~~C-syDLCL~CC~EL 382 (979)
+ ||+|.+ .|+-.--.|.-| .||||-.|-...
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 6 999999 999999999988 599999997653
No 43
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=67.81 E-value=2.6 Score=47.89 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=16.3
Q ss_pred EeeecCceeEecCCCcccc
Q 038377 894 FEQHVGEAVIIPAGCPYQI 912 (979)
Q Consensus 894 F~Q~lGEAVFIPAGCPHQV 912 (979)
+.=++|||+|||||.||=.
T Consensus 160 v~lkpGe~~fl~Agt~HA~ 178 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAY 178 (312)
T ss_pred EecCCCCEEEecCCCceee
Confidence 5567999999999999953
No 44
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=67.80 E-value=3.6 Score=43.71 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=25.8
Q ss_pred cceeEeeecCceeEecCCCcccccccccc
Q 038377 890 EPWTFEQHVGEAVIIPAGCPYQIRNLKSC 918 (979)
Q Consensus 890 EpWTF~Q~lGEAVFIPAGCPHQVRNLkSC 918 (979)
+.+.+.=..||+||||+|..|++.|.-+.
T Consensus 118 ~~~~~~v~pGd~v~IPpg~~H~~iN~G~e 146 (191)
T PRK04190 118 EARWIEMEPGTVVYVPPYWAHRSVNTGDE 146 (191)
T ss_pred cEEEEEECCCCEEEECCCCcEEeEECCCC
Confidence 37889999999999999999999997654
No 45
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.17 E-value=3 Score=46.83 Aligned_cols=46 Identities=30% Similarity=0.855 Sum_probs=36.6
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
...+|-=|.-+- +.-.|+=|+ .-||-+||..|-.+-.| ||.||--|
T Consensus 238 a~~kC~LCLe~~-~~pSaTpCG-HiFCWsCI~~w~~ek~e-----CPlCR~~~ 283 (293)
T KOG0317|consen 238 ATRKCSLCLENR-SNPSATPCG-HIFCWSCILEWCSEKAE-----CPLCREKF 283 (293)
T ss_pred CCCceEEEecCC-CCCCcCcCc-chHHHHHHHHHHccccC-----CCcccccC
Confidence 446899998753 345788899 77999999999988644 99999755
No 46
>PLN02288 mannose-6-phosphate isomerase
Probab=63.56 E-value=3.5 Score=48.28 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=14.0
Q ss_pred ecCceeEecCCCccc
Q 038377 897 HVGEAVIIPAGCPYQ 911 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQ 911 (979)
.+|||||||||.||=
T Consensus 256 ~PGeaifl~ag~~HA 270 (394)
T PLN02288 256 NPGEALYLGANEPHA 270 (394)
T ss_pred CCCCEEEecCCCCce
Confidence 789999999999994
No 47
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=62.87 E-value=21 Score=41.54 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=28.0
Q ss_pred HHHHHHHh-cCCCEEEEeccccCCCC-CCcch-hhhhhh
Q 038377 543 EHFQKHWR-KGQPIIVRNVLEVTSDL-SWDPI-VMFCTY 578 (979)
Q Consensus 543 ~hFQ~hW~-kGePVIVr~Vl~~~s~l-sWeP~-~mwr~~ 578 (979)
.+|-+-|. ...|||+|+.+.--..+ .|.+. |+..++
T Consensus 34 l~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~al 72 (437)
T KOG2508|consen 34 LDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSAL 72 (437)
T ss_pred HHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhc
Confidence 67888886 89999999999865666 89887 664443
No 48
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=61.75 E-value=3.1 Score=34.38 Aligned_cols=44 Identities=30% Similarity=0.773 Sum_probs=31.7
Q ss_pred CcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 222 KRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 222 ~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
.+|.-|+.+... +.-..|+=..||..|+.+|+. -...||+||.-
T Consensus 3 ~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~-----~~~~CP~Cr~~ 46 (50)
T PF13920_consen 3 EECPICFENPRD-VVLLPCGHLCFCEECAERLLK-----RKKKCPICRQP 46 (50)
T ss_dssp SB-TTTSSSBSS-EEEETTCEEEEEHHHHHHHHH-----TTSBBTTTTBB
T ss_pred CCCccCCccCCc-eEEeCCCChHHHHHHhHHhcc-----cCCCCCcCChh
Confidence 478888876532 333467744599999999987 56789999963
No 49
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=59.32 E-value=5.5 Score=37.53 Aligned_cols=45 Identities=29% Similarity=0.702 Sum_probs=35.0
Q ss_pred CcccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 222 KRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 222 ~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
..|..|.-.. -.+|+++ |+ .-|=+.||.+|...- ..+..||.||.
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~-C~-H~FH~hCI~kWl~~~--~~~~~CPmCR~ 79 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGK-CS-HNFHMHCILKWLSTQ--SSKGQCPMCRQ 79 (85)
T ss_pred cCCCCccCCCCCCceeecc-Cc-cHHHHHHHHHHHccc--cCCCCCCCcCC
Confidence 4788888865 3678877 88 459999999998863 23679999996
No 50
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=58.38 E-value=4.4 Score=48.14 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=25.4
Q ss_pred hCccceeEeeecCceeEecCCCcccccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSC 918 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSC 918 (979)
+-|..=++.=..||.||||+|.||+.+|.-+-
T Consensus 410 v~~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~ 441 (468)
T TIGR01479 410 VTIGDETLLLTENESTYIPLGVIHRLENPGKI 441 (468)
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEcCCCC
Confidence 33445566668999999999999999998753
No 51
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=57.61 E-value=4.5 Score=29.68 Aligned_cols=26 Identities=31% Similarity=1.078 Sum_probs=19.6
Q ss_pred CCCCCcccchhhhhhhccCcHHHHHhhCCCC
Q 038377 238 SSCRKLFFCVDCVKEWYFDTQEDVKKACPVC 268 (979)
Q Consensus 238 ~~C~rk~fC~~CI~~wYp~~~edi~~~CP~C 268 (979)
..|+ ..||..|+..|+. .....||+|
T Consensus 14 ~~C~-H~~c~~C~~~~~~----~~~~~CP~C 39 (39)
T smart00184 14 LPCG-HTFCRSCIRKWLK----SGNNTCPIC 39 (39)
T ss_pred ecCC-ChHHHHHHHHHHH----hCcCCCCCC
Confidence 4577 4499999999986 344568887
No 52
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.72 E-value=3.9 Score=47.08 Aligned_cols=88 Identities=22% Similarity=0.468 Sum_probs=49.1
Q ss_pred ccccccccccccccCCCccCCCcceeeeeccccchhhhccccCCcccccccCCCceE-------ecCCCCCcccchhhhh
Q 038377 179 GAEAAAVNRRRFRSKNIEPMPVGTLQVVPYKRDVVSLRRRRRRKRCHWCRRRGQSLI-------KCSSCRKLFFCVDCVK 251 (979)
Q Consensus 179 g~~~~~~~~r~~rskn~ep~~~~~~~Vv~~~~d~~~~rk~~~~~~CHQC~r~d~~vV-------~C~~C~rk~fC~~CI~ 251 (979)
|+....|+--.+|+.+.++-++-.+.-.-- ++.. .-+ ...++|-=|+-+-.-.+ .=.+|. ..||..||.
T Consensus 122 ~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e-~~~a-~~~-s~~k~CGICme~i~ek~~~~~rfgilpnC~-H~~Cl~Cir 197 (344)
T KOG1039|consen 122 GLGTQHPICKRQYKNSMKRGSSCALSSAME-RSFA-LQK-SSEKECGICMETINEKAASERRFGILPNCN-HSFCLNCIR 197 (344)
T ss_pred ccccccchhHHHHhhhhcccccccchHhhh-hccC-cCc-cccccceehhhhccccchhhhhcccCCCcc-hhhhhcHhH
Confidence 344556666667776666554332110000 0000 000 34568888886431111 112376 669999999
Q ss_pred hhccCc--HHHHHhhCCCCCC
Q 038377 252 EWYFDT--QEDVKKACPVCRG 270 (979)
Q Consensus 252 ~wYp~~--~edi~~~CP~CRg 270 (979)
+|=.-. .-.|...||+||.
T Consensus 198 ~wr~~~q~~~~~sksCP~CRv 218 (344)
T KOG1039|consen 198 KWRQATQFESKTSKSCPFCRV 218 (344)
T ss_pred hhhhhhccccccccCCCcccC
Confidence 997554 4569999999985
No 53
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=56.11 E-value=5.8 Score=40.62 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=38.4
Q ss_pred CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCc
Q 038377 866 HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCP 909 (979)
Q Consensus 866 hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCP 909 (979)
-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|=.
T Consensus 19 Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 19 APSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred CcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 39999999999999999999999999987 7799999988864
No 54
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=55.86 E-value=4 Score=31.99 Aligned_cols=29 Identities=31% Similarity=0.907 Sum_probs=21.2
Q ss_pred ecCCCCCcccchhhhhhhccCcHHHHHhhCCCC
Q 038377 236 KCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVC 268 (979)
Q Consensus 236 ~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~C 268 (979)
.=..|+ ..||..||.+|+.. .....||.|
T Consensus 13 ~~~~C~-H~fC~~C~~~~~~~---~~~~~CP~C 41 (41)
T PF00097_consen 13 ILLPCG-HSFCRDCLRKWLEN---SGSVKCPLC 41 (41)
T ss_dssp EETTTS-EEEEHHHHHHHHHH---TSSSBTTTT
T ss_pred EEecCC-CcchHHHHHHHHHh---cCCccCCcC
Confidence 446677 66999999999875 333448876
No 55
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=54.60 E-value=7.9 Score=38.38 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=26.0
Q ss_pred eEeee----cCceeEecCCCccccccc--cccchhhcccc-CCcc
Q 038377 893 TFEQH----VGEAVIIPAGCPYQIRNL--KSCVNVVLDFI-SPEN 930 (979)
Q Consensus 893 TF~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlDFV-SPEn 930 (979)
.+.|. .||.++||+|.||=+.|. .+.+.++.=+. +|++
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~ 125 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPN 125 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTG
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCcc
Confidence 34555 899999999999999999 56666655443 4444
No 56
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.15 E-value=7.7 Score=45.57 Aligned_cols=47 Identities=28% Similarity=0.655 Sum_probs=35.2
Q ss_pred cCCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCccc
Q 038377 220 RRKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGC 274 (979)
Q Consensus 220 ~~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CNC 274 (979)
....|.=|...- ..+ -+.|+ ..||..||..|.... ..||.|+..+.-
T Consensus 25 ~~l~C~IC~d~~~~Pv--itpCg-H~FCs~CI~~~l~~~-----~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPV--LTSCS-HTFCSLCIRRCLSNQ-----PKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCcc--CCCCC-CchhHHHHHHHHhCC-----CCCCCCCCcccc
Confidence 456899998643 333 26898 779999999998652 479999988763
No 57
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=53.69 E-value=4.8 Score=32.61 Aligned_cols=27 Identities=37% Similarity=0.974 Sum_probs=22.0
Q ss_pred CCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 238 SSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 238 ~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
++|+ ..||..||.++. .....||+|+.
T Consensus 18 ~~Cg-H~~C~~C~~~~~-----~~~~~CP~C~k 44 (44)
T PF14634_consen 18 TSCG-HIFCEKCLKKLK-----GKSVKCPICRK 44 (44)
T ss_pred cccC-CHHHHHHHHhhc-----CCCCCCcCCCC
Confidence 4566 779999999998 55678999984
No 58
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=53.32 E-value=6 Score=45.50 Aligned_cols=34 Identities=32% Similarity=0.858 Sum_probs=28.0
Q ss_pred ccCccc-cCCCCcccccccc-cCccCc-ccchhhhHH
Q 038377 347 KYNRLY-CCSCKTSIVDYHR-SCASCS-YTLCLSCCR 380 (979)
Q Consensus 347 ~~DERv-CDnCkTSIvD~HR-SC~~Cs-yDLCL~CC~ 380 (979)
+..|+| ||.|..--|-|.| -|-.|+ ||||-+|--
T Consensus 4 ~rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCye 40 (381)
T KOG1280|consen 4 SRHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYE 40 (381)
T ss_pred CCcCCceeccccccceeeeeeEeeeecchhHHHHHhh
Confidence 457999 9999877777776 488885 999999975
No 59
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=52.85 E-value=7.7 Score=46.52 Aligned_cols=48 Identities=17% Similarity=0.104 Sum_probs=32.8
Q ss_pred HhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHH
Q 038377 886 EFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTE 933 (979)
Q Consensus 886 EyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 933 (979)
++.|..=++.=..||.|+||+|.||+.+|.-.=-=+.+--.+|+-++|
T Consensus 418 ~v~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~yl~e 465 (478)
T PRK15460 418 KVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEE 465 (478)
T ss_pred EEEECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCCC
Confidence 456666677778999999999999999998542222222245544443
No 60
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=50.33 E-value=9.3 Score=44.37 Aligned_cols=53 Identities=28% Similarity=0.850 Sum_probs=36.1
Q ss_pred ccCCcccccccCCC--ceE-----------------ecCCCC-CcccchhhhhhhccCcH-----H---HHHhhCCCCCC
Q 038377 219 RRRKRCHWCRRRGQ--SLI-----------------KCSSCR-KLFFCVDCVKEWYFDTQ-----E---DVKKACPVCRG 270 (979)
Q Consensus 219 ~~~~~CHQC~r~d~--~vV-----------------~C~~C~-rk~fC~~CI~~wYp~~~-----e---di~~~CP~CRg 270 (979)
.....|--|+.... .++ .|+.|- |-+.|.+|+.+|+-.=. + .=+-.||.||.
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcc
Confidence 45678988887551 222 677777 66889999999976521 1 23456888886
Q ss_pred C
Q 038377 271 T 271 (979)
Q Consensus 271 ~ 271 (979)
.
T Consensus 349 ~ 349 (358)
T PF10272_consen 349 K 349 (358)
T ss_pred c
Confidence 4
No 61
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.13 E-value=10 Score=43.18 Aligned_cols=43 Identities=23% Similarity=0.709 Sum_probs=30.6
Q ss_pred CcccccccCC---Cc---eEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 222 KRCHWCRRRG---QS---LIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 222 ~~CHQC~r~d---~~---vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
.+|--|+... -. +|. .|+ ..||..||.+.+..-. ..||.|+.+
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CG-H~~C~sCv~~l~~~~~----~~CP~C~~~ 52 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCG-HTLCESCVDLLFVRGS----GSCPECDTP 52 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCC-CcccHHHHHHHhcCCC----CCCCCCCCc
Confidence 4899999854 12 444 788 7799999999765421 379977643
No 62
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=49.12 E-value=8.6 Score=38.38 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=37.1
Q ss_pred CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCC
Q 038377 866 HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGC 908 (979)
Q Consensus 866 hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGC 908 (979)
-|.|...-.+.+.+=+.|+++|||..|.| +.||-|.|=||-
T Consensus 18 a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 18 APLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred CCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 38888999999999999999999999987 689999999985
No 63
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=48.71 E-value=9.5 Score=39.54 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=24.4
Q ss_pred cccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCcccccccc
Q 038377 871 QNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 871 Q~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
.+.||...+- +|.-+|=.|.=..+.-..||.+++|||.|-.
T Consensus 75 GTl~l~~~~~-----~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSHE-----KYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SSS-----SS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEecccc-----cCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 3567764443 7999999999999999999999999999964
No 64
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=48.65 E-value=9.2 Score=34.44 Aligned_cols=41 Identities=27% Similarity=0.814 Sum_probs=25.3
Q ss_pred cccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCC
Q 038377 223 RCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCR 269 (979)
Q Consensus 223 ~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CR 269 (979)
.|-.|+.+. ...+.=..|+ ..|-..||.+|.-... .||.||
T Consensus 32 ~~~~~~~~~~~~~i~~~~C~-H~FH~~Ci~~Wl~~~~-----~CP~CR 73 (73)
T PF12678_consen 32 PCPECQAPQDECPIVWGPCG-HIFHFHCISQWLKQNN-----TCPLCR 73 (73)
T ss_dssp TTCCHHHCTTTS-EEEETTS-EEEEHHHHHHHHTTSS-----B-TTSS
T ss_pred hhhhhcCCccccceEecccC-CCEEHHHHHHHHhcCC-----cCCCCC
Confidence 344444443 2222224575 7799999999985533 999998
No 65
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=46.79 E-value=9.9 Score=27.99 Aligned_cols=23 Identities=26% Similarity=0.707 Sum_probs=20.5
Q ss_pred ccCCCCcccccccccCccCcccc
Q 038377 352 YCCSCKTSIVDYHRSCASCSYTL 374 (979)
Q Consensus 352 vCDnCkTSIvD~HRSC~~CsyDL 374 (979)
.|.+|.+.|.+=.+.||+|...|
T Consensus 4 ~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 4 FCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred CCcccCCcCCcccccChhhCCCC
Confidence 39999999999999999998765
No 66
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.33 E-value=6.8 Score=42.86 Aligned_cols=47 Identities=26% Similarity=0.718 Sum_probs=31.2
Q ss_pred ccCCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 219 RRRKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 219 ~~~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
+.---|-=|--.- .-||- -|+ .-||-+||++|.--. .-...||||.+
T Consensus 45 ~~~FdCNICLd~akdPVvT--lCG-HLFCWpClyqWl~~~--~~~~~cPVCK~ 92 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVT--LCG-HLFCWPCLYQWLQTR--PNSKECPVCKA 92 (230)
T ss_pred CCceeeeeeccccCCCEEe--ecc-cceehHHHHHHHhhc--CCCeeCCcccc
Confidence 4455788887655 45654 377 679999999995332 12345799865
No 67
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=46.20 E-value=11 Score=42.52 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.4
Q ss_pred eEeeecCceeEecCCCccccccccccchhhccccCCcc
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPEN 930 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 930 (979)
.|+=.+||..+||.|++|++.....|+.+++-|..|=.
T Consensus 177 ~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~ 214 (319)
T PF08007_consen 177 EVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTW 214 (319)
T ss_dssp EEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBH
T ss_pred EEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCch
Confidence 56668999999999999999999999999999998844
No 68
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=45.45 E-value=15 Score=36.54 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCCCcCcccccCHh-hHHHHHHHhCccceeEeeecCceeEecCCCcccccccc
Q 038377 865 VHPILDQNFFLDAT-HKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 865 ~hPIHDQ~fYLt~e-hk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
.||-.++-+|+-.- ..-.+-++.|=+-+++.-..||+++||+|-+|+..|.-
T Consensus 47 ~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~ 99 (146)
T smart00835 47 YHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSG 99 (146)
T ss_pred eCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCC
Confidence 34544566665432 12111112222557888899999999999999999974
No 69
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=44.18 E-value=9.1 Score=35.91 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=32.1
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCcccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRN 914 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRN 914 (979)
..||-. ||+++.++.|.+.+|.+ .||+||+=||-.+.|++
T Consensus 54 ~s~i~k---fl~e~~~~~l~~~~~a~-------~GD~ll~~Ag~~~~v~~ 93 (95)
T PF02938_consen 54 KSPIAK---FLSEEELKALIERLGAK-------PGDLLLFVAGKKEIVNK 93 (95)
T ss_dssp ECTTCC---CCHHHHHHHHHHHTT---------TTEEEEEEEESHHHHHH
T ss_pred cCcccc---cCCHHHHHHHHHHhCCC-------CCCEEEEECCCHHHHHh
Confidence 455543 59999999999999996 59999999999887764
No 70
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=43.95 E-value=14 Score=27.69 Aligned_cols=22 Identities=23% Similarity=0.822 Sum_probs=20.1
Q ss_pred cCCCCcccccccccCccCcccc
Q 038377 353 CCSCKTSIVDYHRSCASCSYTL 374 (979)
Q Consensus 353 CDnCkTSIvD~HRSC~~CsyDL 374 (979)
|..|..-|-.--+.||.|.|+.
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCCC
Confidence 8899999999999999999974
No 71
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=43.56 E-value=16 Score=40.39 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=32.5
Q ss_pred CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccc
Q 038377 866 HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 866 hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
|+-.++-+|+-.--- +.-+..-+++=..||+++||||.||..+|...
T Consensus 77 ~~g~ee~iyVl~G~l-----~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGEV-----NVTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 333345566544322 23345667777889999999999999999763
No 72
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=42.44 E-value=20 Score=42.16 Aligned_cols=46 Identities=35% Similarity=0.562 Sum_probs=40.9
Q ss_pred chhhHHHhhhcCCCCCeeeccC--ccccccCcHHHH-HHHHhcCCCEEEE
Q 038377 512 TKQLKVAAIRENSNDNFLFFPT--LMDVQGDKLEHF-QKHWRKGQPIIVR 558 (979)
Q Consensus 512 ~~~~rkaA~Reds~DN~LYcP~--~~di~~~~l~hF-Q~hW~kGePVIVr 558 (979)
..+|-+||+|. +=.|=||||. .-.+...+|.+| ++|..+|.-|+|.
T Consensus 158 ~e~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 158 IEQLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEe
Confidence 45789999999 9999999996 777888999999 6899999999885
No 73
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=41.27 E-value=9.6 Score=44.19 Aligned_cols=15 Identities=47% Similarity=0.837 Sum_probs=12.5
Q ss_pred ecCceeEecCCCccc
Q 038377 897 HVGEAVIIPAGCPYQ 911 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQ 911 (979)
.+|||+|+|||.||-
T Consensus 255 ~pGeaifl~a~~~HA 269 (373)
T PF01238_consen 255 QPGEAIFLPAGEPHA 269 (373)
T ss_dssp -TT-EEEEHTTHHEE
T ss_pred cCCceEEecCCCccc
Confidence 589999999999996
No 74
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.77 E-value=16 Score=38.84 Aligned_cols=43 Identities=26% Similarity=0.719 Sum_probs=34.5
Q ss_pred CcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 222 KRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 222 ~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
-.|--|+-.. ..+..=++|+ ..||-.||++=. .-..+||.|++
T Consensus 132 ~~CPiCl~~~sek~~vsTkCG-HvFC~~Cik~al-----k~~~~CP~C~k 175 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCG-HVFCSQCIKDAL-----KNTNKCPTCRK 175 (187)
T ss_pred cCCCceecchhhccccccccc-hhHHHHHHHHHH-----HhCCCCCCccc
Confidence 4799999888 6676779999 789999998644 34568999985
No 75
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=39.04 E-value=16 Score=42.37 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=35.1
Q ss_pred ceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHHHhhcCCc
Q 038377 891 PWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPT 946 (979)
Q Consensus 891 pWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~ 946 (979)
..+|.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.- .|++=+..+|.
T Consensus 288 ~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~~l~~~p~ 342 (367)
T TIGR03404 288 ARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQWLALTPP 342 (367)
T ss_pred EEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHHHHhhCCH
Confidence 45666788999999999999999997643333333333332221 25555555653
No 76
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=38.68 E-value=15 Score=26.54 Aligned_cols=22 Identities=32% Similarity=0.763 Sum_probs=19.7
Q ss_pred cCCCCcccccccccCccCcccc
Q 038377 353 CCSCKTSIVDYHRSCASCSYTL 374 (979)
Q Consensus 353 CDnCkTSIvD~HRSC~~CsyDL 374 (979)
|-+|...|-|=.+.|++|...|
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 7899999999999999998765
No 77
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=37.75 E-value=12 Score=30.50 Aligned_cols=28 Identities=25% Similarity=0.763 Sum_probs=18.5
Q ss_pred CCCCcccchhhhhhhccCcHHHHHhhCCCC
Q 038377 239 SCRKLFFCVDCVKEWYFDTQEDVKKACPVC 268 (979)
Q Consensus 239 ~C~rk~fC~~CI~~wYp~~~edi~~~CP~C 268 (979)
.|+ ..||..||.+|..+....- ..||.|
T Consensus 15 ~CG-H~FC~~Cl~~~~~~~~~~~-~~CP~C 42 (42)
T PF15227_consen 15 PCG-HSFCRSCLERLWKEPSGSG-FSCPEC 42 (42)
T ss_dssp SSS-SEEEHHHHHHHHCCSSSST----SSS
T ss_pred CCc-CHHHHHHHHHHHHccCCcC-CCCcCC
Confidence 566 6799999999988752211 789987
No 78
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=36.87 E-value=14 Score=40.60 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=37.9
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCcccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRN 914 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRN 914 (979)
.|--|||.+|+-.-.- ++-|.+=+|.=..||.+|||.|.+|.-.+
T Consensus 171 wtl~~dEi~YVLEGe~-----~l~IdG~t~~l~pGDvlfIPkGs~~hf~t 215 (233)
T PRK15457 171 WTLNYDEIDMVLEGEL-----HVRHEGETMIAKAGDVMFIPKGSSIEFGT 215 (233)
T ss_pred eeccceEEEEEEEeEE-----EEEECCEEEEeCCCcEEEECCCCeEEecC
Confidence 7778899999876654 67889999999999999999999976543
No 79
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=36.80 E-value=10 Score=43.31 Aligned_cols=28 Identities=32% Similarity=0.845 Sum_probs=25.2
Q ss_pred cCCCCcccccc-cccCccC-cccchhhhHH
Q 038377 353 CCSCKTSIVDY-HRSCASC-SYTLCLSCCR 380 (979)
Q Consensus 353 CDnCkTSIvD~-HRSC~~C-syDLCL~CC~ 380 (979)
||.|..-|.|. |-+|..| -|||||-|--
T Consensus 8 CdvC~~d~T~~~~i~C~eC~~~DLC~pCF~ 37 (432)
T COG5114 8 CDVCFLDMTDLTFIKCNECPAVDLCLPCFV 37 (432)
T ss_pred ehHHHHhhhcceeeeeecccccceehhhhh
Confidence 99999999886 6799999 9999999964
No 80
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=36.13 E-value=31 Score=41.45 Aligned_cols=58 Identities=28% Similarity=0.532 Sum_probs=37.0
Q ss_pred cccccccCCCccCCCcc------ee---eeeccccchhhhccccCCcccccccCC---CceEecCCCCCcccchhhhhhh
Q 038377 186 NRRRFRSKNIEPMPVGT------LQ---VVPYKRDVVSLRRRRRRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEW 253 (979)
Q Consensus 186 ~~r~~rskn~ep~~~~~------~~---Vv~~~~d~~~~rk~~~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~w 253 (979)
.||.+.|.|-.-||..- |- -+|- +....|--||..- ++.-+|.+|+ +.||.-|-..-
T Consensus 867 srrrlqsnnetqmpssatstsatlsppawipd----------~~a~~cmacq~pf~afrrrhhcrncg-gifcg~cs~as 935 (990)
T KOG1819|consen 867 SRRRLQSNNETQMPSSATSTSATLSPPAWIPD----------EDAEQCMACQMPFNAFRRRHHCRNCG-GIFCGKCSCAS 935 (990)
T ss_pred chhhhhccccccCCccccccccccCCcccCCC----------CcchhhhhccCcHHHHHHhhhhcccC-ceeecccccCC
Confidence 46778888877776432 11 1221 3445677777644 5778999999 56999775544
Q ss_pred c
Q 038377 254 Y 254 (979)
Q Consensus 254 Y 254 (979)
-
T Consensus 936 a 936 (990)
T KOG1819|consen 936 A 936 (990)
T ss_pred C
Confidence 3
No 81
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=36.06 E-value=13 Score=43.84 Aligned_cols=31 Identities=35% Similarity=0.890 Sum_probs=27.1
Q ss_pred ccc-cCCCCccccccc-ccCccCc-ccchhhhHH
Q 038377 350 RLY-CCSCKTSIVDYH-RSCASCS-YTLCLSCCR 380 (979)
Q Consensus 350 ERv-CDnCkTSIvD~H-RSC~~Cs-yDLCL~CC~ 380 (979)
+-. ||+|.--|.+.- -.|..|- |||||-|-.
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs 46 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFS 46 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHh
Confidence 345 999999999865 8999999 999999975
No 82
>PRK11171 hypothetical protein; Provisional
Probab=35.66 E-value=20 Score=39.69 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=24.0
Q ss_pred hCccceeEeeecCceeEecCCCcccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
+.+..=++.=..||.|+||+|.||+.+|.-
T Consensus 96 v~~~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 96 LTLEGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEECC
Confidence 334444666688999999999999999975
No 83
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=35.37 E-value=16 Score=42.25 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=14.7
Q ss_pred HhCccceeEee-ecCceeEecCCCc
Q 038377 886 EFEIEPWTFEQ-HVGEAVIIPAGCP 909 (979)
Q Consensus 886 EyGVEpWTF~Q-~lGEAVFIPAGCP 909 (979)
-||.---|=-| -.-||||||||--
T Consensus 289 ~yG~~fttpAlVVEkdaVfIPAGWD 313 (473)
T KOG3905|consen 289 SYGFPFTTPALVVEKDAVFIPAGWD 313 (473)
T ss_pred hcCcccCCcceEeecceeEeccCCC
Confidence 46643333222 3469999999963
No 84
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.33 E-value=26 Score=40.06 Aligned_cols=50 Identities=26% Similarity=0.664 Sum_probs=35.4
Q ss_pred hccccCCcccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 216 RRRRRRKRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 216 rk~~~~~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
+..+.+--|-=|+.+- +.-++=.=|+ .+|=.+||.+|.-+ -..+||+||-
T Consensus 318 ~ea~~GveCaICms~fiK~d~~~vlPC~-H~FH~~Cv~kW~~~----y~~~CPvCrt 369 (374)
T COG5540 318 VEADKGVECAICMSNFIKNDRLRVLPCD-HRFHVGCVDKWLLG----YSNKCPVCRT 369 (374)
T ss_pred HhcCCCceEEEEhhhhcccceEEEeccC-ceechhHHHHHHhh----hcccCCccCC
Confidence 3456667899999754 3334444555 67999999999653 3578999984
No 85
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.28 E-value=25 Score=40.76 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=37.4
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcccccccCCCC
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCKACSSSQY 282 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CNCk~Clr~~~ 282 (979)
..||.-|+--=...+.=..|- ++||.+||-+=.-. -...||.||..|.=+.=||.+.
T Consensus 43 ~v~c~icl~llk~tmttkeCl-hrfc~~ci~~a~r~----gn~ecptcRk~l~SkrsLr~Dp 99 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECL-HRFCFDCIWKALRS----GNNECPTCRKKLVSKRSLRIDP 99 (381)
T ss_pred hhccHHHHHHHHhhcccHHHH-HHHHHHHHHHHHHh----cCCCCchHHhhccccccCCCCc
Confidence 346666653111111223455 67999999654332 3457999999999999999987
No 86
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=31.79 E-value=29 Score=28.06 Aligned_cols=29 Identities=34% Similarity=0.880 Sum_probs=21.8
Q ss_pred ccccccCCCc-eEecCCCCCcccchhhhhhhccC
Q 038377 224 CHWCRRRGQS-LIKCSSCRKLFFCVDCVKEWYFD 256 (979)
Q Consensus 224 CHQC~r~d~~-vV~C~~C~rk~fC~~CI~~wYp~ 256 (979)
|+.|.+.+.- .+.|..|++. ||. +-+||+
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~-FC~---~HR~~e 30 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNL-FCG---EHRLPE 30 (39)
T ss_pred CcccCCcccccCeECCccCCc-ccc---ccCCcc
Confidence 8899999954 8899999955 775 445554
No 87
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=29.92 E-value=38 Score=32.30 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=44.6
Q ss_pred ccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHHHhhcCCcccccccc
Q 038377 874 FLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKAN 953 (979)
Q Consensus 874 YLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akED 953 (979)
++|.+-+..|..|||+ +.+|.+.. |.||-||- .+-..||+-|..-|++|-++-.
T Consensus 2 ~~~~~~k~~l~~eyg~-------~~~dtgs~----evq~a~Lt---------------~ri~~L~~Hlk~hkKD~~srRG 55 (89)
T COG0184 2 SLTSEIKQELRDEYGI-------PEVDTGSG----EVQLALLT---------------ERINNLTEHLKEHKKDHHSRRG 55 (89)
T ss_pred CchHHHHHHHHHHhCC-------CCCCCCCc----HHHHHHHH---------------HHHHHHHHHHHHCCcchhHHHH
Confidence 6899999999999996 56666654 78888775 4566799999999999987755
Q ss_pred hh
Q 038377 954 KF 955 (979)
Q Consensus 954 KL 955 (979)
-+
T Consensus 56 L~ 57 (89)
T COG0184 56 LL 57 (89)
T ss_pred HH
Confidence 44
No 88
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=29.67 E-value=26 Score=29.60 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=22.2
Q ss_pred CCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 238 SSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 238 ~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
..|+ ..||-.||.+|.-. ...||+|+..
T Consensus 17 ~~~G-~v~~~~~i~~~~~~-----~~~cP~~~~~ 44 (63)
T smart00504 17 LPSG-QTYERRAIEKWLLS-----HGTDPVTGQP 44 (63)
T ss_pred CCCC-CEEeHHHHHHHHHH-----CCCCCCCcCC
Confidence 4666 77999999999854 4689998754
No 89
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=29.33 E-value=33 Score=38.23 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=28.5
Q ss_pred HhCccceeEeeecCceeEecCCCcccccccccc
Q 038377 886 EFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSC 918 (979)
Q Consensus 886 EyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSC 918 (979)
.|-|.+=++.-..||+||||+|.||+......|
T Consensus 58 ~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~ 90 (302)
T PRK10371 58 EYLINNEKVQINQGHITLFWACTPHQLTDPGNC 90 (302)
T ss_pred EEEECCEEEEEcCCcEEEEecCCcccccccCCC
Confidence 588889999999999999999999997655554
No 90
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=28.89 E-value=31 Score=36.67 Aligned_cols=62 Identities=16% Similarity=0.359 Sum_probs=45.9
Q ss_pred Ccccc-cCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHH
Q 038377 870 DQNFF-LDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTE 933 (979)
Q Consensus 870 DQ~fY-Lt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 933 (979)
|..|| |.-++.-++.+ +=+..++.=+.||..+||+|.||..+.-..||=+.+.=..|+..-.
T Consensus 55 dE~FyqleG~~~l~v~d--~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d 117 (177)
T PRK13264 55 EEFFYQLEGDMYLKVQE--DGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELD 117 (177)
T ss_pred ceEEEEECCeEEEEEEc--CCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCcc
Confidence 56666 44443333322 2234678889999999999999999889999999998888886654
No 91
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=28.42 E-value=31 Score=36.05 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=39.7
Q ss_pred cceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHH
Q 038377 890 EPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTEC 934 (979)
Q Consensus 890 EpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC 934 (979)
+..++.=..||..+||+|.||..+--..||=+.+.=.+|++...+
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~ 112 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDG 112 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcc
Confidence 356788899999999999999988889999999999999987763
No 92
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=28.40 E-value=33 Score=34.03 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=38.3
Q ss_pred CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCc
Q 038377 866 HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCP 909 (979)
Q Consensus 866 hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCP 909 (979)
-|+|...-++...+=+.|.++||++-+.| +-||-|-|=+|==
T Consensus 14 a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~ 55 (114)
T TIGR01080 14 APLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDF 55 (114)
T ss_pred CcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCC
Confidence 49999999999999999999999999977 7899999999853
No 93
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=28.03 E-value=34 Score=28.65 Aligned_cols=29 Identities=24% Similarity=0.642 Sum_probs=24.0
Q ss_pred cCCCCcccccccccCccCc-ccchhhhHHH
Q 038377 353 CCSCKTSIVDYHRSCASCS-YTLCLSCCRD 381 (979)
Q Consensus 353 CDnCkTSIvD~HRSC~~Cs-yDLCL~CC~E 381 (979)
||.|..-+...+-+|.++. ||||..|-.+
T Consensus 3 C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~ 32 (45)
T cd02336 3 CFTCGNDCTRVRYHNLKAKKYDLCPSCYQE 32 (45)
T ss_pred ccCCCCccCceEEEecCCCccccChHHHhC
Confidence 8888887777777787776 9999999885
No 94
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=27.91 E-value=24 Score=39.33 Aligned_cols=26 Identities=19% Similarity=0.553 Sum_probs=22.4
Q ss_pred cccCccc--cCCCCcccccccccCccCc
Q 038377 346 FKYNRLY--CCSCKTSIVDYHRSCASCS 371 (979)
Q Consensus 346 ~~~DERv--CDnCkTSIvD~HRSC~~Cs 371 (979)
|..-++. |+||.+-+.-|.-+||+|+
T Consensus 76 C~rvDQl~~C~~CGa~V~~~e~~Cp~C~ 103 (314)
T PF09567_consen 76 CYRVDQLGKCNNCGANVSRLEESCPNCG 103 (314)
T ss_pred hhhhhhhhhhccccceeeehhhcCCCCC
Confidence 5555566 9999999999999999996
No 95
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=27.60 E-value=31 Score=30.94 Aligned_cols=18 Identities=39% Similarity=0.737 Sum_probs=13.2
Q ss_pred cceeEeeecCceeEecCCCc
Q 038377 890 EPWTFEQHVGEAVIIPAGCP 909 (979)
Q Consensus 890 EpWTF~Q~lGEAVFIPAGCP 909 (979)
++.+| ..||+||||+|..
T Consensus 44 ~~~~~--~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 44 ETVTF--KAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEE--ETTEEEEE-TTEE
T ss_pred CEEEE--cCCcEEEECCCCE
Confidence 44444 7999999999984
No 96
>PRK11171 hypothetical protein; Provisional
Probab=27.22 E-value=35 Score=37.76 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=27.6
Q ss_pred HhCccceeEeeecCceeEecCCCcccccccc
Q 038377 886 EFEIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 886 EyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
+|.+..-++.=..||++++|+++||+.+|.-
T Consensus 217 ~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g 247 (266)
T PRK11171 217 VYRLNNDWVEVEAGDFIWMRAYCPQACYAGG 247 (266)
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEECCC
Confidence 4778888888899999999999999999963
No 97
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=26.37 E-value=36 Score=25.80 Aligned_cols=26 Identities=31% Similarity=0.940 Sum_probs=21.8
Q ss_pred cCCCCcccccc-cccCccCcccchhhh
Q 038377 353 CCSCKTSIVDY-HRSCASCSYTLCLSC 378 (979)
Q Consensus 353 CDnCkTSIvD~-HRSC~~CsyDLCL~C 378 (979)
|+.|...+-.+ -=+|..|.|.|-+.|
T Consensus 3 C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 3 CDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 78888888888 788888888888776
No 98
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=24.93 E-value=28 Score=31.63 Aligned_cols=14 Identities=36% Similarity=1.194 Sum_probs=10.5
Q ss_pred ccchhhhhhhccCc
Q 038377 244 FFCVDCVKEWYFDT 257 (979)
Q Consensus 244 ~fC~~CI~~wYp~~ 257 (979)
.||-.|+.+||-+.
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999874
No 99
>PF12852 Cupin_6: Cupin
Probab=24.86 E-value=40 Score=34.57 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=16.9
Q ss_pred ecCceeEecCCCcccccccc
Q 038377 897 HVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQVRNLk 916 (979)
..||.||+|.|.||...--.
T Consensus 60 ~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 60 EAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred cCCCEEEEcCCCCeEeCCCC
Confidence 67999999999999985433
No 100
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=23.57 E-value=47 Score=32.25 Aligned_cols=28 Identities=18% Similarity=0.551 Sum_probs=21.5
Q ss_pred cccCccc-cCCCCccccc-------ccccCccCccc
Q 038377 346 FKYNRLY-CCSCKTSIVD-------YHRSCASCSYT 373 (979)
Q Consensus 346 ~~~DERv-CDnCkTSIvD-------~HRSC~~CsyD 373 (979)
...+-.+ |.+|....+. .|+.|++|.|-
T Consensus 16 ~klpt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y 51 (99)
T PRK14892 16 PKLPKIFECPRCGKVSISVKIKKNIAIITCGNCGLY 51 (99)
T ss_pred cCCCcEeECCCCCCeEeeeecCCCcceEECCCCCCc
Confidence 3334456 9999977776 79999999874
No 102
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=40 Score=42.42 Aligned_cols=43 Identities=28% Similarity=0.707 Sum_probs=28.2
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVC 268 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~C 268 (979)
...+|--|-.+- .-+.=++|. ..||..||+.+|-. =..+||-|
T Consensus 642 ~~LkCs~Cn~R~-Kd~vI~kC~-H~FC~~Cvq~r~et----RqRKCP~C 684 (698)
T KOG0978|consen 642 ELLKCSVCNTRW-KDAVITKCG-HVFCEECVQTRYET----RQRKCPKC 684 (698)
T ss_pred hceeCCCccCch-hhHHHHhcc-hHHHHHHHHHHHHH----hcCCCCCC
Confidence 456788886322 112225666 67999999999954 23578876
No 103
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.33 E-value=65 Score=28.15 Aligned_cols=24 Identities=21% Similarity=0.636 Sum_probs=19.0
Q ss_pred ccCCcccccccCC-----CceEecCCCCC
Q 038377 219 RRRKRCHWCRRRG-----QSLIKCSSCRK 242 (979)
Q Consensus 219 ~~~~~CHQC~r~d-----~~vV~C~~C~r 242 (979)
..+++|+.|.... .++..|.+|+-
T Consensus 26 ~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~ 54 (69)
T PF07282_consen 26 YTSQTCPRCGHRNKKRRSGRVFTCPNCGF 54 (69)
T ss_pred CCccCccCcccccccccccceEEcCCCCC
Confidence 5788999998754 46888988883
No 104
>PRK13503 transcriptional activator RhaS; Provisional
Probab=23.18 E-value=65 Score=34.59 Aligned_cols=31 Identities=3% Similarity=-0.032 Sum_probs=23.2
Q ss_pred hCccceeEeeecCceeEecCCCccccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
+.|..=++.=..||++|||+|.+|...+...
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 4444445555789999999999998877654
No 105
>PF13891 zf-C3Hc3H: Potential DNA-binding domain
Probab=22.51 E-value=52 Score=29.23 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=20.3
Q ss_pred cccccccCchhhHHHHhhcccc
Q 038377 22 RCNRRVMEDKKLCELHHLQGRH 43 (979)
Q Consensus 22 rc~~~~~~~~k~ce~h~~~g~~ 43 (979)
.|++++||..+||-+|+..-++
T Consensus 8 ~C~~~~lp~~~yC~~HIl~D~~ 29 (65)
T PF13891_consen 8 GCSQPALPGSKYCIRHILEDPN 29 (65)
T ss_pred CcCcccCchhhHHHHHhccCCC
Confidence 6999999999999999998775
No 106
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.43 E-value=27 Score=44.98 Aligned_cols=44 Identities=25% Similarity=0.894 Sum_probs=31.5
Q ss_pred ccccccc----CC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 223 RCHWCRR----RG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 223 ~CHQC~r----~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
-|.-|-. .| -.--+|-.|+.| |=..|+.+|+-.. -...||.||.
T Consensus 1471 ECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss---~~s~CPlCRs 1520 (1525)
T COG5219 1471 ECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASS---ARSNCPLCRS 1520 (1525)
T ss_pred hhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhc---CCCCCCcccc
Confidence 5766754 22 234579999977 8999999999764 2356999983
No 107
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.96 E-value=34 Score=36.34 Aligned_cols=16 Identities=44% Similarity=1.331 Sum_probs=12.2
Q ss_pred EecCCCC--Ccccchhhh
Q 038377 235 IKCSSCR--KLFFCVDCV 250 (979)
Q Consensus 235 V~C~~C~--rk~fC~~CI 250 (979)
-.|..|+ |++||.+|-
T Consensus 16 s~C~~C~~SRkFfCY~C~ 33 (230)
T KOG3795|consen 16 STCPGCKSSRKFFCYDCR 33 (230)
T ss_pred ccCCCCCCcceEEEEeec
Confidence 3577777 789999883
No 108
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=20.14 E-value=1.1e+02 Score=24.19 Aligned_cols=23 Identities=17% Similarity=0.533 Sum_probs=19.2
Q ss_pred HHHHHhhHhhhchhhhhhhHHHH
Q 038377 306 LICMLLPIVRQINQDQNVELEIE 328 (979)
Q Consensus 306 LL~~LLP~Lkqi~~EQ~~E~EiE 328 (979)
.|-+++|.++++...|..+..++
T Consensus 7 Fl~Sl~p~~k~L~~~~k~~~k~~ 29 (37)
T PF02944_consen 7 FLLSLLPHMKRLPPKQKLKFKMK 29 (37)
T ss_pred HHHHhHHHHHhCCHHHHHHHHHH
Confidence 46789999999999999885554
Done!