Query 038377
Match_columns 979
No_of_seqs 193 out of 258
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:55:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ypd_A Probable JMJC domain-co 100.0 1E-124 3E-129 1032.3 9.9 332 538-975 20-375 (392)
2 4gjz_A Lysine-specific demethy 99.0 1.2E-10 4.2E-15 117.8 4.5 140 538-720 7-153 (235)
3 3k2o_A Bifunctional arginine d 98.9 2.2E-09 7.5E-14 118.3 10.4 53 888-940 252-304 (336)
4 2yu1_A JMJC domain-containing 98.9 1E-08 3.4E-13 117.0 14.1 84 888-973 262-345 (451)
5 3k3o_A PHF8, PHD finger protei 98.9 6.9E-09 2.4E-13 115.7 11.8 84 889-976 214-299 (371)
6 3kv4_A PHD finger protein 8; e 98.8 1E-08 3.6E-13 116.8 12.1 84 889-977 298-384 (447)
7 3kv5_D JMJC domain-containing 98.8 1.1E-08 3.9E-13 117.7 11.3 86 889-976 333-418 (488)
8 3pua_A GRC5, PHD finger protei 98.7 4.8E-08 1.6E-12 109.6 12.5 84 889-976 241-326 (392)
9 3kv9_A JMJC domain-containing 98.7 1.6E-08 5.6E-13 113.6 8.2 86 889-976 242-327 (397)
10 3al5_A HTYW5, JMJC domain-cont 98.7 6.8E-09 2.3E-13 113.9 3.4 42 889-930 237-278 (338)
11 3d8c_A Hypoxia-inducible facto 98.5 2E-08 6.9E-13 110.7 0.2 40 888-927 257-297 (349)
12 3pur_A Lysine-specific demethy 97.2 0.00015 5E-09 84.1 4.2 50 890-939 364-413 (528)
13 2xxz_A Lysine-specific demethy 96.7 0.00095 3.3E-08 73.7 4.6 59 869-931 260-318 (332)
14 3avr_A Lysine-specific demethy 96.1 0.0035 1.2E-07 73.0 4.7 63 865-932 316-378 (531)
15 1vrb_A Putative asparaginyl hy 95.5 0.02 6.7E-07 63.2 7.4 80 889-973 215-304 (342)
16 4ask_A Lysine-specific demethy 95.0 0.015 5E-07 67.3 4.5 60 868-931 293-352 (510)
17 2pfw_A Cupin 2, conserved barr 92.7 0.019 6.5E-07 51.8 -0.3 57 865-929 51-107 (116)
18 4e2g_A Cupin 2 conserved barre 92.2 0.032 1.1E-06 51.1 0.6 58 865-929 58-115 (126)
19 3lrq_A E3 ubiquitin-protein li 91.5 0.062 2.1E-06 48.8 1.7 48 220-272 21-68 (100)
20 1x4j_A Ring finger protein 38; 91.1 0.098 3.4E-06 44.6 2.4 47 219-271 21-69 (75)
21 2opk_A Hypothetical protein; p 90.2 0.083 2.8E-06 48.6 1.3 24 894-917 75-98 (112)
22 2kiz_A E3 ubiquitin-protein li 90.2 0.11 3.9E-06 43.3 2.0 47 219-271 12-60 (69)
23 3dxt_A JMJC domain-containing 89.9 0.2 6.7E-06 56.0 4.1 62 868-933 242-303 (354)
24 2q30_A Uncharacterized protein 89.7 0.1 3.5E-06 46.1 1.4 40 887-928 68-108 (110)
25 3h7j_A Bacilysin biosynthesis 89.6 0.069 2.4E-06 55.5 0.2 59 865-929 163-221 (243)
26 1yhf_A Hypothetical protein SP 89.6 0.12 4.3E-06 46.3 1.9 58 865-929 57-114 (115)
27 2l0b_A E3 ubiquitin-protein li 89.5 0.14 4.9E-06 45.6 2.1 47 219-271 38-86 (91)
28 1iym_A EL5; ring-H2 finger, ub 89.1 0.25 8.5E-06 39.3 3.1 45 221-271 5-52 (55)
29 3lag_A Uncharacterized protein 89.0 0.12 4.1E-06 46.9 1.3 25 893-917 60-84 (98)
30 3ht1_A REMF protein; cupin fol 88.9 0.17 5.9E-06 47.0 2.3 41 889-929 76-116 (145)
31 3fjs_A Uncharacterized protein 88.8 0.14 4.7E-06 47.1 1.6 58 865-929 53-110 (114)
32 3h8u_A Uncharacterized conserv 88.4 0.17 5.7E-06 46.4 1.9 59 865-928 56-115 (125)
33 2djb_A Polycomb group ring fin 88.2 0.16 5.4E-06 43.0 1.4 47 220-272 14-60 (72)
34 2ecm_A Ring finger and CHY zin 88.1 0.2 6.8E-06 39.8 1.9 46 220-271 4-52 (55)
35 1v70_A Probable antibiotics sy 88.0 0.17 5.9E-06 43.7 1.6 59 865-928 45-103 (105)
36 2fc7_A ZZZ3 protein; structure 87.6 0.26 8.8E-06 44.3 2.5 38 346-383 16-59 (82)
37 1chc_A Equine herpes virus-1 r 87.6 0.29 9.9E-06 40.6 2.7 47 220-272 4-50 (68)
38 2b8m_A Hypothetical protein MJ 87.3 0.19 6.4E-06 45.6 1.5 44 887-930 60-106 (117)
39 2xlg_A SLL1785 protein, CUCA; 87.3 0.24 8.1E-06 52.3 2.4 75 865-942 60-163 (239)
40 2fqp_A Hypothetical protein BP 87.2 0.25 8.5E-06 43.8 2.2 48 865-917 35-84 (97)
41 2ozj_A Cupin 2, conserved barr 87.0 0.19 6.5E-06 45.3 1.3 47 869-920 58-104 (114)
42 2ect_A Ring finger protein 126 86.6 0.38 1.3E-05 41.0 2.9 47 219-271 13-61 (78)
43 1juh_A Quercetin 2,3-dioxygena 86.5 0.22 7.5E-06 54.8 1.7 40 893-933 292-332 (350)
44 2ckl_B Ubiquitin ligase protei 86.2 0.38 1.3E-05 47.0 3.1 49 220-273 53-101 (165)
45 2gu9_A Tetracenomycin polyketi 86.2 0.23 7.8E-06 43.9 1.4 43 888-930 58-100 (113)
46 3ibm_A Cupin 2, conserved barr 86.1 0.22 7.5E-06 49.1 1.3 59 865-929 73-132 (167)
47 3d82_A Cupin 2, conserved barr 85.9 0.29 9.7E-06 42.6 1.8 27 893-919 69-95 (102)
48 1o5u_A Novel thermotoga mariti 85.8 0.23 7.8E-06 45.5 1.2 46 870-920 50-96 (101)
49 2ckl_A Polycomb group ring fin 85.3 0.43 1.5E-05 43.4 2.8 47 220-272 14-60 (108)
50 3kgz_A Cupin 2 conserved barre 85.3 0.29 9.9E-06 48.0 1.7 59 865-929 61-119 (156)
51 3ng2_A RNF4, snurf, ring finge 85.2 0.22 7.5E-06 41.5 0.7 48 219-272 8-61 (71)
52 2d8t_A Dactylidin, ring finger 85.2 0.51 1.8E-05 39.7 3.0 46 219-271 13-58 (71)
53 2ea6_A Ring finger protein 4; 85.1 0.2 6.9E-06 41.3 0.4 46 220-271 14-65 (69)
54 3opt_A DNA damage-responsive t 84.5 0.65 2.2E-05 52.1 4.3 60 869-932 286-345 (373)
55 3rns_A Cupin 2 conserved barre 84.3 0.21 7.3E-06 51.3 0.3 53 865-923 54-106 (227)
56 2y43_A E3 ubiquitin-protein li 84.3 0.55 1.9E-05 42.0 3.0 47 221-273 22-68 (99)
57 2csy_A Zinc finger protein 183 84.3 0.33 1.1E-05 41.9 1.4 47 220-273 14-60 (81)
58 2ozi_A Hypothetical protein RP 83.9 0.31 1.1E-05 44.4 1.1 23 895-917 62-84 (98)
59 2xeu_A Ring finger protein 4; 83.6 0.23 7.9E-06 40.3 0.1 32 234-271 22-53 (64)
60 1y9q_A Transcriptional regulat 83.5 0.36 1.2E-05 47.6 1.5 55 870-930 127-181 (192)
61 4h7l_A Uncharacterized protein 83.4 0.24 8.2E-06 49.5 0.2 45 865-914 62-108 (157)
62 4ayc_A E3 ubiquitin-protein li 82.8 0.56 1.9E-05 44.8 2.5 44 222-272 54-97 (138)
63 2ep4_A Ring finger protein 24; 82.8 0.57 1.9E-05 39.5 2.3 46 220-271 14-61 (74)
64 2dip_A Zinc finger SWIM domain 82.4 0.5 1.7E-05 43.8 1.9 34 348-381 28-64 (98)
65 2ecy_A TNF receptor-associated 82.3 0.28 9.7E-06 40.7 0.2 46 220-271 14-59 (66)
66 2i45_A Hypothetical protein; n 82.0 0.51 1.7E-05 42.1 1.8 60 865-932 44-104 (107)
67 2e5r_A Dystrobrevin alpha; ZZ 82.0 0.5 1.7E-05 40.4 1.6 32 352-383 12-46 (63)
68 2ox0_A JMJC domain-containing 82.0 0.91 3.1E-05 51.2 4.2 62 868-933 260-321 (381)
69 2yur_A Retinoblastoma-binding 81.6 0.47 1.6E-05 40.4 1.3 47 220-270 14-60 (74)
70 1lr5_A Auxin binding protein 1 81.4 0.51 1.8E-05 45.5 1.7 25 892-916 88-112 (163)
71 3l2h_A Putative sugar phosphat 80.9 0.52 1.8E-05 45.4 1.5 58 866-928 65-123 (162)
72 2oa2_A BH2720 protein; 1017534 80.6 0.65 2.2E-05 44.3 2.1 24 894-917 90-113 (148)
73 3cew_A Uncharacterized cupin p 80.5 0.55 1.9E-05 43.0 1.5 30 887-916 61-90 (125)
74 1tot_A CREB-binding protein; z 80.4 0.47 1.6E-05 39.2 0.9 32 351-383 6-39 (52)
75 1v87_A Deltex protein 2; ring- 80.0 0.27 9.1E-06 45.0 -0.8 40 233-273 54-93 (114)
76 3jzv_A Uncharacterized protein 80.0 0.59 2E-05 46.3 1.6 31 887-917 86-116 (166)
77 2xdv_A MYC-induced nuclear ant 79.9 1.9 6.5E-05 49.3 5.9 30 887-916 194-223 (442)
78 1jm7_B BARD1, BRCA1-associated 79.7 1 3.5E-05 41.7 3.0 45 220-272 21-65 (117)
79 1vj2_A Novel manganese-contain 79.4 0.65 2.2E-05 43.0 1.6 47 865-917 65-111 (126)
80 2ecj_A Tripartite motif-contai 78.9 0.86 2.9E-05 36.3 2.0 44 220-268 14-58 (58)
81 3lwc_A Uncharacterized protein 78.7 0.84 2.9E-05 42.7 2.1 55 868-929 58-113 (119)
82 2o8q_A Hypothetical protein; c 78.6 0.71 2.4E-05 42.7 1.6 61 865-931 60-121 (134)
83 2ecw_A Tripartite motif-contai 78.6 0.6 2E-05 39.8 1.0 52 220-273 18-70 (85)
84 2egp_A Tripartite motif-contai 78.4 0.44 1.5E-05 40.4 0.1 52 220-273 11-64 (79)
85 4axo_A EUTQ, ethanolamine util 78.2 0.76 2.6E-05 45.5 1.7 60 866-932 81-140 (151)
86 4i4a_A Similar to unknown prot 77.4 1 3.4E-05 41.2 2.2 68 870-946 55-124 (128)
87 1x82_A Glucose-6-phosphate iso 77.3 0.89 3E-05 45.7 2.0 40 890-929 117-156 (190)
88 1g25_A CDK-activating kinase a 77.0 0.71 2.4E-05 38.1 1.0 46 222-272 4-53 (65)
89 2ysl_A Tripartite motif-contai 76.9 0.88 3E-05 38.1 1.6 49 220-272 19-67 (73)
90 3rns_A Cupin 2 conserved barre 76.9 0.91 3.1E-05 46.6 2.0 48 865-918 170-218 (227)
91 1juh_A Quercetin 2,3-dioxygena 76.7 0.45 1.5E-05 52.3 -0.4 69 865-939 67-140 (350)
92 3l11_A E3 ubiquitin-protein li 76.5 1.1 3.7E-05 41.2 2.1 45 221-272 15-60 (115)
93 3h7j_A Bacilysin biosynthesis 76.1 0.5 1.7E-05 48.9 -0.2 47 865-917 51-98 (243)
94 1qwr_A Mannose-6-phosphate iso 75.5 0.91 3.1E-05 49.6 1.6 16 897-912 163-178 (319)
95 1z6u_A NP95-like ring finger p 75.3 1.2 4.1E-05 43.5 2.2 49 221-275 78-126 (150)
96 2bnm_A Epoxidase; oxidoreducta 75.2 1 3.4E-05 44.5 1.7 41 870-915 141-185 (198)
97 1y3t_A Hypothetical protein YX 75.0 1.1 3.7E-05 47.7 2.0 67 866-938 236-302 (337)
98 3i7d_A Sugar phosphate isomera 74.9 1 3.5E-05 44.1 1.6 59 866-929 62-122 (163)
99 1zx5_A Mannosephosphate isomer 74.7 0.98 3.4E-05 49.0 1.6 16 897-912 163-178 (300)
100 3bcw_A Uncharacterized protein 74.7 0.92 3.2E-05 43.0 1.2 30 894-923 89-118 (123)
101 2ecv_A Tripartite motif-contai 74.7 0.7 2.4E-05 39.4 0.4 52 220-273 18-70 (85)
102 3ztg_A E3 ubiquitin-protein li 73.9 0.9 3.1E-05 39.9 0.9 49 220-272 12-60 (92)
103 1jm7_A BRCA1, breast cancer ty 73.9 1 3.4E-05 40.7 1.2 49 221-273 21-69 (112)
104 4ic3_A E3 ubiquitin-protein li 73.1 1.9 6.4E-05 36.9 2.7 41 221-271 24-64 (74)
105 1fi2_A Oxalate oxidase, germin 72.5 1.8 6E-05 43.7 2.7 38 893-930 120-157 (201)
106 3fl2_A E3 ubiquitin-protein li 72.2 1.1 3.6E-05 41.8 0.9 47 221-273 52-98 (124)
107 1o4t_A Putative oxalate decarb 71.8 1.4 4.7E-05 41.3 1.7 43 870-917 79-121 (133)
108 2ecl_A Ring-box protein 2; RNF 71.4 1.3 4.3E-05 38.7 1.2 32 234-271 42-73 (81)
109 4diq_A Lysine-specific demethy 71.4 2.8 9.6E-05 48.7 4.4 89 852-948 194-299 (489)
110 2f4p_A Hypothetical protein TM 71.2 1.7 5.9E-05 41.6 2.2 35 894-928 89-123 (147)
111 3knv_A TNF receptor-associated 71.1 1 3.5E-05 43.6 0.6 48 219-272 29-76 (141)
112 4ap4_A E3 ubiquitin ligase RNF 70.9 1.5 5.2E-05 40.2 1.7 46 221-272 7-58 (133)
113 1t1h_A Gspef-atpub14, armadill 70.6 2.2 7.6E-05 36.2 2.6 46 220-272 7-53 (78)
114 1rc6_A Hypothetical protein YL 70.5 1.4 4.6E-05 46.1 1.4 47 866-917 197-243 (261)
115 2wfp_A Mannose-6-phosphate iso 69.2 1.5 5.3E-05 49.3 1.6 15 897-911 245-259 (394)
116 2ecn_A Ring finger protein 141 68.9 0.72 2.5E-05 38.5 -0.9 44 220-271 14-57 (70)
117 1y3t_A Hypothetical protein YX 67.3 1.9 6.6E-05 45.8 1.8 66 865-936 63-128 (337)
118 1sef_A Conserved hypothetical 67.1 2 6.7E-05 45.4 1.8 43 870-917 204-246 (274)
119 1rmd_A RAG1; V(D)J recombinati 67.0 1.9 6.4E-05 39.6 1.4 46 221-272 23-68 (116)
120 1pmi_A PMI, phosphomannose iso 66.7 1.9 6.4E-05 49.4 1.6 16 896-911 270-285 (440)
121 2vqa_A SLL1358 protein, MNCA; 66.5 1.5 5.1E-05 47.5 0.8 53 893-946 279-331 (361)
122 3hct_A TNF receptor-associated 66.2 1.6 5.5E-05 40.4 0.8 46 220-271 17-62 (118)
123 4ap4_A E3 ubiquitin ligase RNF 65.9 2 6.8E-05 39.4 1.4 47 219-271 70-122 (133)
124 2pyt_A Ethanolamine utilizatio 65.3 2.3 8E-05 40.6 1.7 50 869-923 75-124 (133)
125 2ct2_A Tripartite motif protei 65.1 1.9 6.4E-05 37.2 1.0 51 220-273 14-67 (88)
126 4e2q_A Ureidoglycine aminohydr 65.1 2.1 7E-05 46.1 1.5 29 887-915 220-248 (266)
127 2vpv_A Protein MIF2, MIF2P; nu 64.1 3 0.0001 41.9 2.3 31 887-917 123-153 (166)
128 2ysj_A Tripartite motif-contai 62.6 1.6 5.6E-05 35.6 0.1 45 220-268 19-63 (63)
129 3dpl_R Ring-box protein 1; ubi 62.0 2.5 8.5E-05 39.3 1.2 31 235-271 68-98 (106)
130 1j58_A YVRK protein; cupin, de 61.5 2.2 7.4E-05 46.8 0.9 27 891-917 300-326 (385)
131 1sq4_A GLXB, glyoxylate-induce 60.8 2.9 9.9E-05 44.5 1.7 43 870-917 91-133 (278)
132 2d40_A Z3393, putative gentisa 59.5 3.3 0.00011 45.7 1.9 54 870-928 121-175 (354)
133 1bor_A Transcription factor PM 59.1 3.8 0.00013 33.1 1.7 43 220-272 5-47 (56)
134 3bu7_A Gentisate 1,2-dioxygena 57.2 4.4 0.00015 45.8 2.4 28 889-916 329-356 (394)
135 1dgw_A Canavalin; duplicated s 56.9 4.6 0.00016 40.1 2.3 27 891-917 82-108 (178)
136 3nw4_A Gentisate 1,2-dioxygena 56.9 4.6 0.00016 45.3 2.5 29 888-916 138-166 (368)
137 2y1n_A E3 ubiquitin-protein li 56.5 3.1 0.00011 47.0 1.1 47 221-273 332-378 (389)
138 1wgm_A Ubiquitin conjugation f 55.6 5.5 0.00019 36.3 2.3 44 221-271 22-66 (98)
139 4a0k_B E3 ubiquitin-protein li 55.3 2.5 8.5E-05 40.2 0.0 26 239-270 83-108 (117)
140 2vje_A E3 ubiquitin-protein li 54.6 3.9 0.00013 34.2 1.1 48 219-271 6-54 (64)
141 1sfn_A Conserved hypothetical 53.9 4.5 0.00015 42.1 1.6 32 887-918 81-112 (246)
142 1zrr_A E-2/E-2' protein; nicke 52.2 7.5 0.00026 39.3 2.9 37 893-929 123-159 (179)
143 4b29_A Dimethylsulfoniopropion 50.7 5.3 0.00018 41.9 1.6 45 865-915 149-194 (217)
144 2vqa_A SLL1358 protein, MNCA; 50.5 3.9 0.00013 44.2 0.6 47 865-916 69-120 (361)
145 1vq8_T 50S ribosomal protein L 50.4 6 0.0002 38.1 1.8 40 867-908 16-55 (120)
146 1sfn_A Conserved hypothetical 50.0 5.9 0.0002 41.2 1.8 31 886-916 198-228 (246)
147 2ecg_A Baculoviral IAP repeat- 49.7 8.3 0.00028 32.8 2.4 41 221-271 25-65 (75)
148 2yho_A E3 ubiquitin-protein li 49.2 9.7 0.00033 33.2 2.8 42 221-272 18-59 (79)
149 3hcs_A TNF receptor-associated 49.1 5.2 0.00018 39.0 1.2 46 220-271 17-62 (170)
150 1sq4_A GLXB, glyoxylate-induce 48.6 5.6 0.00019 42.3 1.4 32 886-917 224-255 (278)
151 2d5f_A Glycinin A3B4 subunit; 48.5 5.7 0.00019 46.1 1.5 33 897-929 118-150 (493)
152 3es1_A Cupin 2, conserved barr 48.2 6.3 0.00022 39.6 1.6 35 893-928 119-153 (172)
153 1sef_A Conserved hypothetical 47.9 6.6 0.00022 41.3 1.8 31 887-917 97-127 (274)
154 3j21_U 50S ribosomal protein L 47.8 7.3 0.00025 37.5 1.9 39 867-907 19-57 (121)
155 4e2q_A Ureidoglycine aminohydr 47.4 5.8 0.0002 42.6 1.3 24 893-916 110-133 (266)
156 1e4u_A Transcriptional repress 47.4 5.6 0.00019 34.8 1.0 47 221-273 11-61 (78)
157 1rc6_A Hypothetical protein YL 47.2 8 0.00027 40.3 2.3 31 887-917 94-124 (261)
158 2lbm_A Transcriptional regulat 46.7 20 0.00068 35.3 4.8 49 219-269 61-115 (142)
159 2e9q_A 11S globulin subunit be 46.3 5.9 0.0002 45.6 1.2 34 897-930 132-165 (459)
160 3ql9_A Transcriptional regulat 44.7 9 0.00031 37.2 2.0 49 219-269 55-109 (129)
161 1vr3_A Acireductone dioxygenas 44.6 10 0.00035 38.9 2.5 37 893-929 128-164 (191)
162 2c2l_A CHIP, carboxy terminus 44.2 6.2 0.00021 40.6 0.9 45 221-272 208-253 (281)
163 3bu7_A Gentisate 1,2-dioxygena 43.6 8 0.00027 43.7 1.7 27 888-914 158-184 (394)
164 2d40_A Z3393, putative gentisa 43.2 10 0.00035 41.8 2.5 27 889-915 303-329 (354)
165 2zet_C Melanophilin; complex, 42.6 6.7 0.00023 39.0 0.8 35 349-383 67-104 (153)
166 2arc_A ARAC, arabinose operon 41.9 9.5 0.00032 35.5 1.7 31 886-916 50-80 (164)
167 3c3v_A Arachin ARAH3 isoform; 41.4 8 0.00028 45.1 1.3 34 897-930 131-164 (510)
168 3t6p_A Baculoviral IAP repeat- 40.9 12 0.00041 41.5 2.6 43 220-272 294-336 (345)
169 1zbd_B Rabphilin-3A; G protein 39.3 15 0.00052 35.6 2.7 72 310-384 18-92 (134)
170 2vje_B MDM4 protein; proto-onc 39.2 9.7 0.00033 31.6 1.1 47 220-271 6-53 (63)
171 2lri_C Autoimmune regulator; Z 39.0 15 0.00051 31.5 2.3 48 220-270 11-58 (66)
172 1fxz_A Glycinin G1; proglycini 39.0 9.2 0.00032 44.1 1.3 30 894-923 115-144 (476)
173 3o36_A Transcription intermedi 37.3 11 0.00037 37.7 1.4 47 222-271 5-51 (184)
174 3cjx_A Protein of unknown func 36.6 12 0.00041 37.3 1.5 33 897-929 85-126 (165)
175 2y0o_A Probable D-lyxose ketol 35.6 13 0.00043 37.8 1.5 43 889-933 115-158 (175)
176 1z2q_A LM5-1; membrane protein 35.4 16 0.00055 32.4 2.0 36 219-255 19-57 (84)
177 2ct0_A Non-SMC element 1 homol 35.4 21 0.00073 31.3 2.7 50 219-272 13-62 (74)
178 3vk6_A E3 ubiquitin-protein li 35.1 11 0.00036 35.4 0.8 40 224-271 4-46 (101)
179 3a1b_A DNA (cytosine-5)-methyl 34.5 36 0.0012 34.2 4.6 47 219-267 77-126 (159)
180 1uij_A Beta subunit of beta co 33.9 12 0.0004 42.5 1.0 46 865-915 65-114 (416)
181 2l5u_A Chromodomain-helicase-D 33.7 16 0.00054 30.6 1.6 49 219-270 9-57 (61)
182 2lv9_A Histone-lysine N-methyl 33.1 16 0.00055 33.4 1.7 44 222-269 29-74 (98)
183 3u5n_A E3 ubiquitin-protein li 33.0 40 0.0014 34.3 4.7 49 220-271 6-54 (207)
184 1fxz_A Glycinin G1; proglycini 31.5 16 0.00055 42.2 1.7 64 865-928 355-419 (476)
185 2kre_A Ubiquitin conjugation f 30.5 22 0.00075 32.3 2.1 43 221-271 29-72 (100)
186 2yql_A PHD finger protein 21A; 30.4 7 0.00024 32.1 -1.1 49 219-270 7-55 (56)
187 3asl_A E3 ubiquitin-protein li 30.4 15 0.00052 31.7 0.9 47 223-270 20-68 (70)
188 3htk_C E3 SUMO-protein ligase 30.3 21 0.00071 38.6 2.2 50 219-272 179-230 (267)
189 3v43_A Histone acetyltransfera 30.2 18 0.00061 33.6 1.5 46 223-270 63-111 (112)
190 1f62_A Transcription factor WS 30.1 20 0.0007 28.5 1.6 46 223-270 2-49 (51)
191 3qwp_A SET and MYND domain-con 30.0 30 0.001 38.8 3.5 35 219-253 45-81 (429)
192 3shb_A E3 ubiquitin-protein li 29.4 14 0.00047 32.7 0.5 47 223-270 28-76 (77)
193 2pv0_B DNA (cytosine-5)-methyl 29.4 44 0.0015 37.8 4.7 44 219-264 91-137 (386)
194 2cr8_A MDM4 protein; ZF-ranbp 29.3 18 0.0006 30.2 1.1 26 232-257 9-42 (53)
195 2cs3_A Protein C14ORF4, MY039 28.9 32 0.0011 31.2 2.8 35 219-253 13-49 (93)
196 3t7l_A Zinc finger FYVE domain 28.7 23 0.0008 31.8 1.9 36 219-255 18-56 (90)
197 1weu_A Inhibitor of growth fam 28.6 24 0.00081 32.3 2.0 48 219-270 34-84 (91)
198 2ea7_A 7S globulin-1; beta bar 28.5 19 0.00064 41.1 1.5 28 891-918 102-130 (434)
199 2zkr_t 60S ribosomal protein L 28.3 13 0.00046 36.7 0.3 40 867-908 22-61 (145)
200 3qww_A SET and MYND domain-con 28.0 36 0.0012 38.4 3.7 35 219-253 47-83 (433)
201 2ysm_A Myeloid/lymphoid or mix 27.8 32 0.0011 31.6 2.7 56 220-280 6-63 (111)
202 2c6a_A Ubiquitin-protein ligas 27.7 21 0.00073 29.1 1.3 25 233-257 12-44 (46)
203 2o1q_A Putative acetyl/propion 27.5 18 0.00063 34.6 1.1 27 892-920 86-113 (145)
204 3c3v_A Arachin ARAH3 isoform; 27.0 21 0.00072 41.7 1.6 64 865-928 389-453 (510)
205 2yrc_A Protein transport prote 26.9 19 0.00065 30.5 0.9 20 5-24 4-37 (59)
206 3ask_A E3 ubiquitin-protein li 26.7 13 0.00043 39.3 -0.2 47 223-270 176-224 (226)
207 2cav_A Protein (canavalin); vi 26.1 25 0.00084 40.2 2.0 25 892-916 128-152 (445)
208 2yw8_A RUN and FYVE domain-con 26.0 30 0.001 30.5 2.1 36 219-255 17-55 (82)
209 2kr4_A Ubiquitin conjugation f 25.8 22 0.00075 31.2 1.2 43 221-271 14-57 (85)
210 1v5n_A PDI-like hypothetical p 25.6 27 0.00092 31.5 1.7 30 351-380 47-77 (89)
211 1j58_A YVRK protein; cupin, de 25.2 27 0.00092 38.1 2.0 47 865-917 96-147 (385)
212 3mpx_A FYVE, rhogef and PH dom 25.1 15 0.00052 40.6 0.0 48 220-268 374-426 (434)
213 1wfk_A Zinc finger, FYVE domai 25.0 28 0.00094 31.3 1.7 35 220-255 8-45 (88)
214 2jmi_A Protein YNG1, ING1 homo 24.7 38 0.0013 30.9 2.6 40 349-389 37-83 (90)
215 1joc_A EEA1, early endosomal a 24.6 32 0.0011 32.8 2.2 36 219-255 67-105 (125)
216 1wim_A KIAA0161 protein; ring 24.3 21 0.00071 31.5 0.7 50 221-271 5-61 (94)
217 2d5f_A Glycinin A3B4 subunit; 24.2 17 0.00058 42.2 0.2 81 865-947 384-465 (493)
218 1x4u_A Zinc finger, FYVE domai 24.2 36 0.0012 30.1 2.2 36 219-255 12-50 (84)
219 1wen_A Inhibitor of growth fam 24.0 40 0.0014 29.2 2.5 48 219-270 14-64 (71)
220 2e6s_A E3 ubiquitin-protein li 24.0 20 0.0007 31.6 0.6 47 223-270 28-76 (77)
221 2ct7_A Ring finger protein 31; 23.9 29 0.00098 30.8 1.6 36 345-380 18-59 (86)
222 1dvp_A HRS, hepatocyte growth 23.7 25 0.00085 36.1 1.3 33 222-255 162-197 (220)
223 3u5e_Y L33, YL33, 60S ribosoma 23.5 15 0.00053 35.6 -0.3 40 867-908 23-62 (127)
224 3n71_A Histone lysine methyltr 22.5 49 0.0017 37.9 3.5 35 219-253 47-83 (490)
225 3fyb_A Protein of unknown func 21.7 24 0.0008 33.1 0.5 14 244-257 41-54 (104)
226 2d8s_A Cellular modulator of i 21.6 31 0.0011 30.3 1.3 47 220-271 14-67 (80)
227 3zyq_A Hepatocyte growth facto 21.6 29 0.00099 36.0 1.3 33 222-255 165-200 (226)
228 2o35_A Hypothetical protein DU 21.5 24 0.00081 33.1 0.5 14 244-257 42-55 (105)
229 1y02_A CARP2, FYVE-ring finger 21.5 35 0.0012 32.7 1.7 36 219-255 17-55 (120)
230 1mm2_A MI2-beta; PHD, zinc fin 21.5 24 0.00083 29.5 0.6 48 220-270 8-55 (61)
231 2ea5_A Cell growth regulator w 21.0 70 0.0024 26.9 3.4 42 220-271 14-55 (68)
232 3kgl_A Cruciferin; 11S SEED gl 20.7 30 0.001 40.0 1.2 34 897-930 150-183 (466)
233 1vfy_A Phosphatidylinositol-3- 20.6 37 0.0013 29.3 1.5 33 222-255 12-47 (73)
No 1
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.8e-125 Score=1032.34 Aligned_cols=332 Identities=29% Similarity=0.525 Sum_probs=253.5
Q ss_pred ccCcHHHHHHHHhcCCCEEEEeccccCCCCCCcchhhhhhhhhcccccCCCCCCceEEeeCCCCceEeechhcccccccC
Q 038377 538 QGDKLEHFQKHWRKGQPIIVRNVLEVTSDLSWDPIVMFCTYLKNSSLKSENDGGAVEETGCSDWFEVEIGVKQLFLGSLR 617 (979)
Q Consensus 538 ~~~~l~hFQ~hW~kGePVIVr~Vl~~~s~lsWeP~~mwr~~~e~~~~~~~~~~~~VkaIDCld~~evei~v~qFF~Gy~~ 617 (979)
+.+|+.|||+||++|||||||||++++++++|+|++||++|. +. .+++|||+||++++|+|++||+||.+
T Consensus 20 ~~~n~~~Fq~hW~~GePViVs~V~~~~~~~~W~Pe~~~~~~g--------d~--~~~lidC~~~~~~~i~v~~Ff~Gf~~ 89 (392)
T 2ypd_A 20 NSSNWKLFKECWKQGQPAVVSGVHKKMNISLWKAESISLDFG--------DH--QADLLNCKDSIISNANVKEFWDGFEE 89 (392)
T ss_dssp CTTHHHHHHHHHTTTCCEEECCHHHHSCGGGGSHHHHHHHHT--------TS--CCCCEETTTCCBCSCCHHHHHHTSSB
T ss_pred CcccHHHHHHHHhCCCcEEEechhhhCcCCccCHHHHHHHhc--------Cc--eeeeeeCCCCccccCcHHHHhhhccc
Confidence 567999999999999999999999999999999999999985 22 35789999999999999999999987
Q ss_pred CC---CCCCCCccceeecCCCChhhHHHhchhhHHHHHhcCCCCCccCCCCccccccccCCCCCCCCCCCCcchhccccc
Q 038377 618 GP---KHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYISYSSG 694 (979)
Q Consensus 618 gr---~~~n~wp~mLKLKDWPps~~Fee~LP~h~~eFi~aLP~~EYT~Pr~G~LNLAskLP~~~lkPDLGPK~YIAYG~~ 694 (979)
|+ .++++||+|||||||||+++|+++||+||+|||++|||||||||+ |+|||||+||+++++||||||||||||++
T Consensus 90 ~~~r~~~~~g~p~~LKLKDWPp~~~F~e~lP~~~~df~~~LPlpEYt~p~-G~LNLAs~LP~~~~kPDLGPK~YiAYG~~ 168 (392)
T 2ypd_A 90 VSKRQKNKSGETVVLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVV 168 (392)
T ss_dssp GGGC------CCCCEEECSSSBTHHHHHHSHHHHHHHHHHCSSHHHHSTT-CTTCCTTTSCGGGCC---CCEEEEECCST
T ss_pred cccCCcCCCCCcceeeecCCCChHHHHHHhHHHHHHHHHcCCchHhhCCC-ccchHHHhCCCCCCCCCCCcchhhhcCcc
Confidence 65 467999999999999999999999999999999999999999985 99999999999999999999999999999
Q ss_pred ccccCCCCcceeeeeccchhhhhhccCccCCChhhhHHHHHHhhcccCCccccccccchhhhhccCCCCCCCCCcccccc
Q 038377 695 EELAQADSVTKLCYDLCDVVNVLAHTTDVPVSTKQLNNIRELMQGHTGQHQTDSVEVAPEQKMANGMGGKSHSDCENKEV 774 (979)
Q Consensus 695 eElgrgDSVTkLH~DmSDAVNIL~htaev~~~~~q~~~I~kl~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (979)
+++|+++|||||||||||||||||||++.+.... .. ..++++.+.+
T Consensus 169 ~~~~~~~gvT~LH~DmsDaVNiL~h~~~~~~~~~-~~-~~~~l~~~~~-------------------------------- 214 (392)
T 2ypd_A 169 AAKDHDIGTTNLHIEVSDVVNILVYVGIAKGNGI-LS-KAGILKKFEE-------------------------------- 214 (392)
T ss_dssp TTTCTTCCSEEEEECSSEEEEEEEEEECCBCTTC-CC-HHHHHHHHHT--------------------------------
T ss_pred hhcccCCCcceeeeehhhhhhhhheecccCcccc-ch-hhhhhhhhhh--------------------------------
Confidence 9999999999999999999999999996432111 00 1111111100
Q ss_pred cccccccccccccccCccccccCCCCCCCCCCCCCCCccccccCCCCCCccchhhcccccccCCCcchhhhhccccCCCc
Q 038377 775 GLCDVLGEEITRHEAGDLNVRDRNSSHDGDYDTDSDPDSLILGCGTNQNSKKSEKRMHFKDHKNNSNYFIKERLAESCGA 854 (979)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~e~~GA 854 (979)
++.+ + . ...|. .+..+.+||
T Consensus 215 ----------------------------~~~d---~---~------------~~~r~--------------~~~~~~~GA 234 (392)
T 2ypd_A 215 ----------------------------EDLD---D---I------------LRKRL--------------KDSSEIPGA 234 (392)
T ss_dssp ----------------------------SCCC---H---H------------HHHHH--------------TCTTCCEEE
T ss_pred ----------------------------cccc---H---H------------Hhhhc--------------cCCCCCCCc
Confidence 0000 0 0 00000 012347899
Q ss_pred cceeeccCCC---------------------CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccc
Q 038377 855 QWDVFRREDV---------------------VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIR 913 (979)
Q Consensus 855 lWDIFRreDv---------------------~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVR 913 (979)
+|||||+||+ +||||||+||||++||++|+|||||+||||+|++|||||||||||||||
T Consensus 235 lW~Ifr~~D~~klr~~L~~~~~e~~~~~~~~~dPihdq~~yL~~~~r~~L~ee~gv~~~~~~Q~~GeavfiPaG~~HQV~ 314 (392)
T 2ypd_A 235 LWHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQ 314 (392)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHC------CCHHHHTCCCCCHHHHHHHHHHHCCCCEEEEEETTCEEEECTTCEEEEE
T ss_pred eeeeeCHhhHHHHHHHHHHHHHhhCCCccCCCCcCcCCCEEecHHHHHHHHHhcCCeeEEEEEcCCCEEEecCCCHHHHh
Confidence 9999999999 7999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhccccCCcchHHHHHHHHHhhcCCcccccccchhhhhhHHHHHHHHHHHHHHHh
Q 038377 914 NLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTAVKEIREL 975 (979)
Q Consensus 914 NLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLEVKkm~l~A~~~AV~ei~~l 975 (979)
||+||||||+||||||||++|++||+|||+|| +|.++|||||||||+||||++||++|++.
T Consensus 315 Nl~~~i~va~df~spe~~~~c~~lt~E~R~l~-~~~~~edkLqvk~m~~~av~~av~~l~~~ 375 (392)
T 2ypd_A 315 NFHSCIQVTEDFVSPEHLVESFHLTQELRLLK-EEINYDDKLQVKNILYHAVKEMVRALKIH 375 (392)
T ss_dssp ESSEEEEEEEEECCGGGHHHHHHHHHHC----------------------------------
T ss_pred cccchhhHhhhhcChhhHHHHHHHHHHHhhcc-hhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999997 69999999999999999999999999864
No 2
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=99.02 E-value=1.2e-10 Score=117.79 Aligned_cols=140 Identities=14% Similarity=0.207 Sum_probs=77.7
Q ss_pred ccCcHHHH-HHHHhcCCCEEEEeccccCCC-CCCcchhhhhhhhhcccccCCCCCCceEEeeCC-----CCceEeechhc
Q 038377 538 QGDKLEHF-QKHWRKGQPIIVRNVLEVTSD-LSWDPIVMFCTYLKNSSLKSENDGGAVEETGCS-----DWFEVEIGVKQ 610 (979)
Q Consensus 538 ~~~~l~hF-Q~hW~kGePVIVr~Vl~~~s~-lsWeP~~mwr~~~e~~~~~~~~~~~~VkaIDCl-----d~~evei~v~q 610 (979)
+.-..+.| ++.|.+++|||++|+.+.-.. -.|+++++...+... .|.+-.+. ++....+++.+
T Consensus 7 ~~pS~~eF~~~y~~~~~Pvvi~g~~~~wpa~~~w~~~yL~~~~g~~----------~v~v~~~~~~~~~~~~~~~~~~~~ 76 (235)
T 4gjz_A 7 HRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCR----------TVPVEVGSRYTDEEWSQTLMTVNE 76 (235)
T ss_dssp ESCCHHHHHHHTTTTTCCEEEESSSTTSHHHHHCSHHHHHHHHTTS----------EEEEEEC-------CEEEEEEHHH
T ss_pred CCCCHHHHHHHHhcCCCcEEEeCCCcCCcccccCCHHHHHHHcCCC----------eEEEEecCcccCCccceeeccHHH
Confidence 33456788 557889999999998764222 258888876554321 23333222 34445678888
Q ss_pred ccccccCCCCCCCCCccceeecCCCChhhHHHhchhhHHHHHhcCCCCCccCCCCccccccccCCCCCCCCCCCCcchhc
Q 038377 611 LFLGSLRGPKHADMCNEKLKLKGWLSSRLFQEQFPAHYAEIIRGLPLPEYMDPKTGVLNIATKLPQNFPTSDLGPSVYIS 690 (979)
Q Consensus 611 FF~Gy~~gr~~~n~wp~mLKLKDWPps~~Fee~LP~h~~eFi~aLP~~EYT~Pr~G~LNLAskLP~~~lkPDLGPK~YIA 690 (979)
|...+..... ...+-+.+|. + ..++.++..-+.+|.|.....+.. .+..+-+|
T Consensus 77 ~~~~~~~~~~-----~~~~y~~~~~----~----~~~~~~l~~d~~~p~~~~~~~~~~------------~~~~~~~w-- 129 (235)
T 4gjz_A 77 FISKYIVNEP-----RDVGYLAQHQ----L----FDQIPELKQDISIPDYCSLGDGEE------------EEITINAW-- 129 (235)
T ss_dssp HHHHHTSSCC-----SSCEEEEEEC----H----HHHCHHHHTTCCCCGGGGGSSSCG------------GGCEEEEE--
T ss_pred HHHHHhhcCC-----cccceeehhh----h----hhhhHHHHHhhcCCcccccccccc------------CccceEEE--
Confidence 8766554322 1233444442 2 333445666666666654211110 11112223
Q ss_pred ccccccccCCCCcceeeeeccchhhhhhcc
Q 038377 691 YSSGEELAQADSVTKLCYDLCDVVNVLAHT 720 (979)
Q Consensus 691 YG~~eElgrgDSVTkLH~DmSDAVNIL~ht 720 (979)
+|.+.++|.||.|..|..+++++-
T Consensus 130 ------iG~~gs~t~~H~D~~~n~~~qv~G 153 (235)
T 4gjz_A 130 ------FGPQGTISPLHQDPQQNFLVQVMG 153 (235)
T ss_dssp ------EECTTCEEEEECCSSEEEEEEEES
T ss_pred ------EeCCCCCceeeeccccceEEEEee
Confidence 355668999999999876655543
No 3
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=98.92 E-value=2.2e-09 Score=118.30 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=50.4
Q ss_pred CccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHHH
Q 038377 888 EIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDE 940 (979)
Q Consensus 888 GVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteE 940 (979)
+..++.++|..||++|||+|-.|||+||..||-|+..|++|.|+...+++|-+
T Consensus 252 ~~~~~~~~l~pGd~l~iP~gw~H~v~~~~~sisv~~~f~~~~nl~~~~~~~~~ 304 (336)
T 3k2o_A 252 EFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR 304 (336)
T ss_dssp GGCCEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH
T ss_pred cCceEEEEECCCCEEEeCCCCcEEEecCCCeEEEEcccCCcccHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999999999999953
No 4
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A
Probab=98.88 E-value=1e-08 Score=117.02 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=65.9
Q ss_pred CccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHHHhhcCCcccccccchhhhhhHHHHHHHH
Q 038377 888 EIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINT 967 (979)
Q Consensus 888 GVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLEVKkm~l~A~~~ 967 (979)
-.+++.++|..||++|||+|.-|||.||..||-|+..|++.-|+..-+++++==+++....+. .=--...|++||+..
T Consensus 262 ~~~~~~v~l~pGE~LfIPsGWwH~V~nledsIait~NF~~~~nl~~~l~~~~~E~~~~v~~~~--~~p~f~~~~w~~~~~ 339 (451)
T 2yu1_A 262 VSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKF--RYPFYYEMCWYVLER 339 (451)
T ss_dssp SSCCEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCSSSHHHHHHHHHHHHHTTCCTTS--SCTTHHHHHHHHHHH
T ss_pred cccceEEEECCCcEEEeCCCceEEEecCCCeEEEeeeeCCcccHHHHHHHHHHHHhhCCCccc--cCccHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999987633333211111 112234899999988
Q ss_pred HHHHHH
Q 038377 968 AVKEIR 973 (979)
Q Consensus 968 AV~ei~ 973 (979)
-++.+.
T Consensus 340 ~~~~~~ 345 (451)
T 2yu1_A 340 YVYCIT 345 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876664
No 5
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=98.87 E-value=6.9e-09 Score=115.66 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=69.3
Q ss_pred ccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHH-Hhhc-CCcccccccchhhhhhHHHHHHH
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLID-EIRL-LPTDHKAKANKFEVTKMALYAIN 966 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~-Lp~~H~akEDKLEVKkm~l~A~~ 966 (979)
.+++.++|..||++|||+|..|||.||..||-|+..|++..|+...++..+ |-|. .|...+ =-...+|++|+++
T Consensus 214 ~~~~ev~l~pGEtLfIPsGWwH~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~~~~~~f~----fp~F~~~~w~~~~ 289 (371)
T 3k3o_A 214 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLSTADLFR----FPNFETICWYVGK 289 (371)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHC----CC----CTTHHHHHHHHHH
T ss_pred CceEEEEECCCcEEEeCCCCeEEEecCCCeEEECCcccchhhHHHHHHHHHHHHhcCCCcccc----cccHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999887 4332 221111 1134789999999
Q ss_pred HHHHHHHHhh
Q 038377 967 TAVKEIRELT 976 (979)
Q Consensus 967 ~AV~ei~~l~ 976 (979)
..++.|+.++
T Consensus 290 ~~~~~~~~~~ 299 (371)
T 3k3o_A 290 HILDIFRGLR 299 (371)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 6
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.83 E-value=1e-08 Score=116.76 Aligned_cols=84 Identities=15% Similarity=0.244 Sum_probs=71.6
Q ss_pred ccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHHHhhcCCcccccccchh---hhhhHHHHHH
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKF---EVTKMALYAI 965 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKL---EVKkm~l~A~ 965 (979)
.+++.++|..||++|||+|..|||.||..||-|+..|++..|+..-++..+==+++. -.+|. ...+|++|++
T Consensus 298 ~~~~~v~l~pGetlfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~E~~~~-----~~~~~~~p~f~~~~w~~~ 372 (447)
T 3kv4_A 298 DKCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNFLHSLNIEMQLKAYEIEKRLS-----TADLFRFPNFETICWYVG 372 (447)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEESSCEEEEEEEECCSTTHHHHHHHHHHHHHTT-----CCGGGSCTTHHHHHHHHH
T ss_pred cceEEEEECCCcEEecCCCCeEEEecCCCEEEEccccccccCHHHHHHHHHHHHhcC-----CCccccccCHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999888444432 12333 3478999999
Q ss_pred HHHHHHHHHhhh
Q 038377 966 NTAVKEIRELTC 977 (979)
Q Consensus 966 ~~AV~ei~~l~~ 977 (979)
+..++.|+.++-
T Consensus 373 ~~~~~~~~~~~~ 384 (447)
T 3kv4_A 373 KHILDIFRGLRE 384 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 7
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.81 E-value=1.1e-08 Score=117.66 Aligned_cols=86 Identities=12% Similarity=0.176 Sum_probs=71.0
Q ss_pred ccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHHHhhcCCcccccccchhhhhhHHHHHHHHH
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTA 968 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLEVKkm~l~A~~~A 968 (979)
.+++.++|..||++|||+|..|||.||..||-|.-.|++..|+...++..+==+.|... .+-.-.....|++|++..-
T Consensus 333 ~~~~~~~l~pGe~lfIPsGWwH~V~nledsIai~~NF~~~~nl~~~l~~~~~e~~~~~~--~~~~~p~f~~~~w~~~~~~ 410 (488)
T 3kv5_D 333 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTP--DLFKFPFFEAICWFVAKNL 410 (488)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHTTCC--TTSSCTTHHHHHHHHHHHH
T ss_pred cceEEEeeCCCCEEEeCCCceEEeeCCCCeEEEccccCCccCHHHHHHHHHHHHhcCCc--ccccCccHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999877644444321 1222335577899999999
Q ss_pred HHHHHHhh
Q 038377 969 VKEIRELT 976 (979)
Q Consensus 969 V~ei~~l~ 976 (979)
+..++.++
T Consensus 411 l~~~~~~~ 418 (488)
T 3kv5_D 411 LETLKELR 418 (488)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988775
No 8
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*
Probab=98.72 E-value=4.8e-08 Score=109.60 Aligned_cols=84 Identities=15% Similarity=0.209 Sum_probs=70.6
Q ss_pred ccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHH-Hhhc-CCcccccccchhhhhhHHHHHHH
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLID-EIRL-LPTDHKAKANKFEVTKMALYAIN 966 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte-EfR~-Lp~~H~akEDKLEVKkm~l~A~~ 966 (979)
.+++.++|..||++|||+|..|||.|+..||-|...|++..|+..-++..+ |-|. .|...+ =-...+|++|++.
T Consensus 241 ~~~~ev~l~pGEtlfIPsGWwH~V~nledSIai~gNFl~~~nl~~~l~~~~~E~~~~~~~~f~----fp~F~~~~wy~~~ 316 (392)
T 3pua_A 241 DKCYKCIVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLKLGSLTQ----FPNFETACWYMGK 316 (392)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCTTCHHHHHHHHHHHHHHTCCCSSC----CTTHHHHHHHHHH
T ss_pred cceEEEEECCCcEEeeCCCceEEEecCCCEEEEcCcccChhhHHHHHHHHHHHHHhCCCccCc----CCChHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999988 5442 222111 1135789999999
Q ss_pred HHHHHHHHhh
Q 038377 967 TAVKEIRELT 976 (979)
Q Consensus 967 ~AV~ei~~l~ 976 (979)
..++.++.+.
T Consensus 317 ~~l~~~~~~~ 326 (392)
T 3pua_A 317 HLLEAFKGSH 326 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 9
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=98.71 E-value=1.6e-08 Score=113.58 Aligned_cols=86 Identities=12% Similarity=0.176 Sum_probs=70.4
Q ss_pred ccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHHHhhcCCcccccccchhhhhhHHHHHHHHH
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPTDHKAKANKFEVTKMALYAINTA 968 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~akEDKLEVKkm~l~A~~~A 968 (979)
.+++.++|..||++|||+|..|||.||..+|-|...|+++.|+...++..+==+.|.. ..+-+=.....|++|++..-
T Consensus 242 ~~~~~v~l~pGe~lfIPsGW~H~V~nledSIai~~NFl~~~nl~~~l~~~~~E~~~k~--~~~~~fp~F~~~~w~~a~~~ 319 (397)
T 3kv9_A 242 DKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKT--PDLFKFPFFEAICWFVAKNL 319 (397)
T ss_dssp SCCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCSTTHHHHHHHHHHHHHHTC--GGGGGSTTHHHHHHHHHHHH
T ss_pred CceEEEEECCCCEEEeCCCCeEEccCCcCeEEECCcccCchhHHHHHHHHHHHHhcCC--CccCcCccHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999988887664343321 11222335677899999999
Q ss_pred HHHHHHhh
Q 038377 969 VKEIRELT 976 (979)
Q Consensus 969 V~ei~~l~ 976 (979)
++.+++++
T Consensus 320 l~~~~~~~ 327 (397)
T 3kv9_A 320 LETLKELR 327 (397)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888765
No 10
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*
Probab=98.66 E-value=6.8e-09 Score=113.86 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=39.5
Q ss_pred ccceeEeeecCceeEecCCCccccccccccchhhccccCCcc
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPEN 930 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 930 (979)
+.++.+++.+||++|||+|..|||+||..||-|..-|.++..
T Consensus 237 ~~~~~~~L~pGD~LyiP~gWwH~v~~l~~sisvn~~~~~~~~ 278 (338)
T 3al5_A 237 ARRYECSLEAGDVLFIPALWFHNVISEEFGVGVNIFWKHLPS 278 (338)
T ss_dssp CCEEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECSSCG
T ss_pred CCCEEEEECCCCEEEECCCCeEEEeeCCCEEEEEEEecCCcc
Confidence 579999999999999999999999999999999999998764
No 11
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...
Probab=98.46 E-value=2e-08 Score=110.75 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=36.5
Q ss_pred CccceeEeeecCceeEecCCCcccccccc-ccchhhccccC
Q 038377 888 EIEPWTFEQHVGEAVIIPAGCPYQIRNLK-SCVNVVLDFIS 927 (979)
Q Consensus 888 GVEpWTF~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVS 927 (979)
.+.++.+++.+||++|||+|..|||+||. .++.|++.|..
T Consensus 257 ~~~~~~~~l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w~ 297 (349)
T 3d8c_A 257 NVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY 297 (349)
T ss_dssp GCCEEEEEECTTCEEEECTTCEEEEEECTTSCCEEEEEEEE
T ss_pred cCCcEEEEECCCCEEEECCCCcEEEEEcCCCCcEEEEEEEc
Confidence 35799999999999999999999999998 58889999875
No 12
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=97.24 E-value=0.00015 Score=84.11 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=46.5
Q ss_pred cceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHH
Q 038377 890 EPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLID 939 (979)
Q Consensus 890 EpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 939 (979)
....++|..||++|||+|..|+|.|+..||-|.-.|++..||..-+++++
T Consensus 364 ~~~~v~l~pGEtlfIPsGW~HaV~tleDSIaiggNFl~~~nl~~qlri~~ 413 (528)
T 3pur_A 364 AVKRVVIKEGQTLLIPAGWIHAVLTPVDSLVFGGNFLHLGNLEMQMRVYH 413 (528)
T ss_dssp CCEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEECCGGGHHHHHHHHH
T ss_pred cEEEEEECCCCEEEecCCceEEEecCCCeEEEcCcccchhhHHHHHHHHH
Confidence 44579999999999999999999999999999999999999999888765
No 13
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=96.72 E-value=0.00095 Score=73.73 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=50.6
Q ss_pred cCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcch
Q 038377 869 LDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENV 931 (979)
Q Consensus 869 HDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 931 (979)
|.+.++++.+ .|+ +.||-=+.|+|++||.|+|++||-|||.|.--|+++|..|..|...
T Consensus 260 ~~~~~~~~p~---~L~-~~gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~ 318 (332)
T 2xxz_A 260 LTGSWWPILD---DLY-ASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAY 318 (332)
T ss_dssp TTSCBCCCHH---HHH-HTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCTTG
T ss_pred hhceecCCHH---HHH-hCCCCeEEEEECCCCEEEECCCceEEEEecceeeEEEEEeCCCcHH
Confidence 3456777664 333 4699999999999999999999999999999999999999998765
No 14
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=96.10 E-value=0.0035 Score=73.03 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=52.8
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchH
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVT 932 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 932 (979)
.|.+ ...|+++.+. |+ +.||-=+.|+|++||.|++++||.|||.|+--|+++|.-|..|.-+.
T Consensus 316 ~~~~-~~~~~~~p~~---L~-~~gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~~~q 378 (531)
T 3avr_A 316 LNFL-MGSWWPNLED---LY-EANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQ 378 (531)
T ss_dssp CCTT-TSCBCCCHHH---HH-HTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSSHHH
T ss_pred CChh-hceeecCHHH---HH-hCCCCeEEEEECCCCEEEECCCceEEEEecceeeeeEEEeccCchHH
Confidence 4544 4567776543 33 46999999999999999999999999999999999999999998655
No 15
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=95.52 E-value=0.02 Score=63.19 Aligned_cols=80 Identities=10% Similarity=0.123 Sum_probs=52.0
Q ss_pred ccceeEeeecCceeEecCCCccccccc--cccchhhccccCCcchHHHHHH--------HHHhhcCCcccccccchhhhh
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNL--KSCVNVVLDFISPENVTECIQL--------IDEIRLLPTDHKAKANKFEVT 958 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNL--kSCIKVAlDFVSPEnV~eC~rL--------teEfR~Lp~~H~akEDKLEVK 958 (979)
..++.++-.+||+.|||+|.+|||+++ ..|+.|.+- +| +..+-+.- ..+||.||.+... .-=++.
T Consensus 215 ~~~~~~~L~pGD~LyiP~gwwH~v~s~~~~~slsvsi~--~~-~~~dll~~~l~~~~~~~~~~r~lp~~~~~--~~~~~~ 289 (342)
T 1vrb_A 215 PDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFG--QP-AWLDLMLAALRKKLISDNRFRELAVNHQS--LHESSK 289 (342)
T ss_dssp CSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEEC--CC-BHHHHHHHHHHHHHTTSGGGGSBCCCTTS--SCHHHH
T ss_pred CCceEEEECCCcEEEeCCCccEEEEECCCCceEEEEEC--CC-cHHHHHHHHHHHHHHhCHHhhhCCCcccc--Cchhhh
Confidence 668999999999999999999999999 468887777 44 33332211 2368888765421 112344
Q ss_pred hHHHHHHHHHHHHHH
Q 038377 959 KMALYAINTAVKEIR 973 (979)
Q Consensus 959 km~l~A~~~AV~ei~ 973 (979)
..++-.+.++++.|.
T Consensus 290 ~~~~~~~~~ll~~l~ 304 (342)
T 1vrb_A 290 SELNGYLESLIQTLS 304 (342)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555554443
No 16
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=94.99 E-value=0.015 Score=67.31 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=50.6
Q ss_pred CcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcch
Q 038377 868 ILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENV 931 (979)
Q Consensus 868 IHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 931 (979)
++...|+.+.+ .| .+.||.=+.|+|++||.|++++|+.|+|.|.-=|+++|-.|.-|-..
T Consensus 293 ~l~~~~~pspe---~L-~kagIPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t~~ 352 (510)
T 4ask_A 293 YLTGSWWPILD---DL-YASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLTAY 352 (510)
T ss_dssp TTTSCBCCCHH---HH-HHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSSHH
T ss_pred hhhccccCCHH---HH-HhCCCCeEEEEECCCCEEEECCCceEEEEecCeeeeeEEEecCCCHH
Confidence 33466777665 33 35899999999999999999999999999999999999999977543
No 17
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=92.66 E-value=0.019 Score=51.77 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=40.6
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
.|| ++|-+|+-.-.- ++-|..=++.=..||+++||+|.||+++|...|. .+.+.+|.
T Consensus 51 ~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~v~~p~ 107 (116)
T 2pfw_A 51 AHR-HSQVSYVVEGEF-----HVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGGI--LIDTFSPA 107 (116)
T ss_dssp CCS-SEEEEEEEEECE-----EEEETTEEEEECTTCEEEECTTCCEEEEESSCEE--EEEEEESC
T ss_pred ECC-cceEEEEEeeEE-----EEEECCEEEEeCCCCEEEECcCCceeeEeCCCcE--EEEEECCc
Confidence 566 677777654432 3444455667789999999999999999998763 35555564
No 18
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=92.17 E-value=0.032 Score=51.09 Aligned_cols=58 Identities=29% Similarity=0.313 Sum_probs=42.5
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
.|| ++|.+|+-.-.- ++-|..-++.=..||+|+||+|.||.++|... --+.+.+++|-
T Consensus 58 ~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v~~p~ 115 (126)
T 4e2g_A 58 EHP-HEQAGVMLEGTL-----ELTIGEETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDIFSPP 115 (126)
T ss_dssp CCS-SEEEEEEEEECE-----EEEETTEEEEECTTEEEEECTTCCEEEECCTT-CEEEEEEEESC
T ss_pred cCC-CceEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEEECCC
Confidence 677 577777755433 44555666777899999999999999999988 23456666664
No 19
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=91.50 E-value=0.062 Score=48.76 Aligned_cols=48 Identities=25% Similarity=0.792 Sum_probs=38.1
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
....|.-|...-..-|.|..|+ ..||..||.+|+.... ..||.||..-
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~Cg-H~FC~~Ci~~~~~~~~----~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCS-KLCCFSCIRRWLTEQR----AQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTC-CEEEHHHHHHHHHHTC----SBCTTTCCBC
T ss_pred CCCCCccCCccccCccccCCCC-ChhhHHHHHHHHHHCc----CCCCCCCCcC
Confidence 3468999987556678889998 7799999999975431 5899999865
No 20
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.09 E-value=0.098 Score=44.58 Aligned_cols=47 Identities=26% Similarity=0.714 Sum_probs=34.9
Q ss_pred ccCCcccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 219 RRRKRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 219 ~~~~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
.....|.=|+..- ...+....|+ ..||..||.+|... ...||+||..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~-----~~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-HEFHAKCVDKWLKA-----NRTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-EEEETTHHHHHHHH-----CSSCTTTCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-CHhHHHHHHHHHHc-----CCcCcCcCCc
Confidence 3556899999653 4456666787 67999999999732 3589999864
No 21
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=90.24 E-value=0.083 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.4
Q ss_pred EeeecCceeEecCCCccccccccc
Q 038377 894 FEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 894 F~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
+.=..||.||||||.||+++|.-.
T Consensus 75 ~~l~~Gd~i~ipa~~~H~~~n~~~ 98 (112)
T 2opk_A 75 RVMRPGDWLHVPAHCRHRVAWTDG 98 (112)
T ss_dssp EEECTTEEEEECTTCCEEEEEECS
T ss_pred EEECCCCEEEECCCCcEEEEeCCC
Confidence 334679999999999999999863
No 22
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=90.22 E-value=0.11 Score=43.33 Aligned_cols=47 Identities=26% Similarity=0.673 Sum_probs=33.8
Q ss_pred ccCCcccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 219 RRRKRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 219 ~~~~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
.....|.=|...- +..+....|+ ..||..||.+|... ...||+||..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~-----~~~CP~Cr~~ 60 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCM-HLFHQVCVDQWLIT-----NKKCPICRVD 60 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTS-CEEEHHHHHHHHHH-----CSBCTTTCSB
T ss_pred CCCCCCeeCCccccCCCcEEEeCCC-CHHHHHHHHHHHHc-----CCCCcCcCcc
Confidence 4556899997643 3445556787 66999999999743 3469999864
No 23
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=89.90 E-value=0.2 Score=55.95 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=54.5
Q ss_pred CcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHH
Q 038377 868 ILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTE 933 (979)
Q Consensus 868 IHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 933 (979)
+|.+.+.++.+ .|+ +.||.-.+++|+.||.|++-.|+=|.|.|+--++..|..|..|.=+.-
T Consensus 242 L~h~~~lisP~---~L~-~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~ 303 (354)
T 3dxt_A 242 LRHKVALISPT---VLK-ENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDY 303 (354)
T ss_dssp GGGCCEEECHH---HHH-HTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHHH
T ss_pred HhcCcccCCHH---HHH-HCCCceEEEEeCCCcEEEECCCceEEEeeccccHhHhhccCcHHHHHh
Confidence 45567888887 344 579999999999999999999999999999999999999999987753
No 24
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=89.72 E-value=0.1 Score=46.14 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=30.0
Q ss_pred hCcc-ceeEeeecCceeEecCCCccccccccccchhhccccCC
Q 038377 887 FEIE-PWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISP 928 (979)
Q Consensus 887 yGVE-pWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 928 (979)
+.+. .=++.=..||++|||||.||+++|...+. .+..++|
T Consensus 68 ~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~--~l~~~~p 108 (110)
T 2q30_A 68 FVGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMK--VLVTIAP 108 (110)
T ss_dssp EECGGGCEEEECTTEEEEEETTSCEEEEESSSEE--EEEEEES
T ss_pred EEeCCCEEEEECCCCEEEeCCCCcEEEEEcCCcE--EEEEECC
Confidence 4454 45666789999999999999999988753 4555555
No 25
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=89.62 E-value=0.069 Score=55.45 Aligned_cols=59 Identities=15% Similarity=0.040 Sum_probs=42.7
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
.|| ++|.+|+..-.- ++.|..=++.=..||+|+||+|+||+++|.-.---+.+++++|-
T Consensus 163 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~ 221 (243)
T 3h7j_A 163 KHR-NEQIGICIGGGY-----DMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPP 221 (243)
T ss_dssp CCS-SEEEEEECSSCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEEESC
T ss_pred eCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcCC
Confidence 566 578888765533 45555556667899999999999999999865444556666664
No 26
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=89.61 E-value=0.12 Score=46.29 Aligned_cols=58 Identities=21% Similarity=0.390 Sum_probs=40.0
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
.|+ +++-+|+..-.- ++.+..=++.=..||+++||+|.||+++|...|.=+.+ ++.|+
T Consensus 57 ~H~-~~e~~~vl~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~v-~~~~~ 114 (115)
T 1yhf_A 57 SSP-GDAMVTILSGLA-----EITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV-VVKPE 114 (115)
T ss_dssp CCS-SEEEEEEEESEE-----EEEETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE-EECSC
T ss_pred ECC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCceEEEE-EEccC
Confidence 456 567777765443 34455556777899999999999999999876543333 33443
No 27
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=89.47 E-value=0.14 Score=45.57 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=34.4
Q ss_pred ccCCcccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 219 RRRKRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 219 ~~~~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
+....|.=|+..- +..+.-..|+ ..||..||.+|... ...||+||..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~wl~~-----~~~CP~Cr~~ 86 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCH-HYFHKPCVSIWLQK-----SGTCPVCRCM 86 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTT-EEEEHHHHHHHHTT-----TCBCTTTCCB
T ss_pred CCCCCCcccChhhcCCCcEEecCCC-ChHHHHHHHHHHHc-----CCcCcCcCcc
Confidence 4566899998542 4444545688 67999999999854 3489999964
No 28
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=89.12 E-value=0.25 Score=39.29 Aligned_cols=45 Identities=27% Similarity=0.560 Sum_probs=32.4
Q ss_pred CCcccccccCC---CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 221 RKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 221 ~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
...|.=|...- ..++....|+ ..||..||.+|... ...||+||..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~w~~~-----~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCG-HGFHAECVDMWLGS-----HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSC-CEECTTHHHHTTTT-----CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCC-CcccHHHHHHHHHc-----CCcCcCCCCE
Confidence 35677777643 2355556787 67999999999855 3579999863
No 29
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=88.98 E-value=0.12 Score=46.85 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.1
Q ss_pred eEeeecCceeEecCCCccccccccc
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
++.-..||++|||+|.+|++.|.-+
T Consensus 60 ~~~l~~G~~~~ip~G~~H~~~N~g~ 84 (98)
T 3lag_A 60 LAQLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CCCBCTTCCEEECTTCEEEEBCCSS
T ss_pred EEEecCCcEEEEcCCCcEECEECCC
Confidence 3445789999999999999999753
No 30
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=88.87 E-value=0.17 Score=47.00 Aligned_cols=41 Identities=27% Similarity=0.148 Sum_probs=30.9
Q ss_pred ccceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
|..=++.=..||+|+||+|.||+++|...---+.+-+++|.
T Consensus 76 ~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~i~~~~ 116 (145)
T 3ht1_A 76 DQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCE 116 (145)
T ss_dssp GGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEEEEESC
T ss_pred ECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEEEECCC
Confidence 55556677889999999999999999866444455555554
No 31
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=88.83 E-value=0.14 Score=47.15 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=41.0
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
.|| +++.+|+-.-.- ++-|..=++.=..||+|+||+|.||+++|...+. +.+-+|.|.
T Consensus 53 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~-~~~~~v~p~ 110 (114)
T 3fjs_A 53 SVA-GPSTIQCLEGEV-----EIGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTS-LLVTVVLVD 110 (114)
T ss_dssp CCS-SCEEEEEEESCE-----EEEETTEEEEECTTEEEEECTTCCEEEEESSSEE-EEEEEECC-
T ss_pred eCC-CcEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCcE-EEEEEEeCC
Confidence 455 357777665443 4566666788889999999999999999997653 333455554
No 32
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=88.43 E-value=0.17 Score=46.37 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCc-cceeEeeecCceeEecCCCccccccccccchhhccccCC
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEI-EPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISP 928 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGV-EpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 928 (979)
.||-.++.||+-.-.- ++-| ..=++.=..||+|+||+|.||+++|..+---+.+.+++|
T Consensus 56 ~H~~~~e~~~Vl~G~~-----~~~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~v~~p 115 (125)
T 3h8u_A 56 VHPHGQDTWTVISGEA-----EYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSVVAP 115 (125)
T ss_dssp -CTTCEEEEEEEECEE-----EEECSTTCEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEEES
T ss_pred cCCCCeEEEEEEEeEE-----EEEECCCeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEEEECC
Confidence 4553345555433321 2333 333555578999999999999999987654455555665
No 33
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.20 E-value=0.16 Score=43.04 Aligned_cols=47 Identities=19% Similarity=0.528 Sum_probs=34.9
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
....|--|...-...+.-+.|+ ..||..||.+|+.. ...||+||..-
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~-----~~~CP~Cr~~~ 60 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECL-HTFCKSCIVRHFYY-----SNRCPKCNIVV 60 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSC-CEECHHHHHHHHHH-----CSSCTTTCCCC
T ss_pred CCCCCCCCChHHHCcCEECCCC-CHHHHHHHHHHHHc-----CCcCCCcCccc
Confidence 3458999976544445556888 67999999999843 57899998764
No 34
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=88.08 E-value=0.2 Score=39.76 Aligned_cols=46 Identities=20% Similarity=0.507 Sum_probs=34.0
Q ss_pred cCCcccccccCC---CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|.-|...- ...+....|+ ..||..||.+|.... ..||+||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~-----~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-HLLHRTCYEEMLKEG-----YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-CEEETTHHHHHHHHT-----CCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-CcccHHHHHHHHHcC-----CcCCCCCCc
Confidence 345788887642 3456777887 579999999997532 789999863
No 35
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=88.04 E-value=0.17 Score=43.69 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=35.7
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCC
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISP 928 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 928 (979)
.|+-.++-+|+..-.- ++.+..=++.=..||+++||+|.||+++|...---+.+-+++|
T Consensus 45 ~H~~~~e~~~v~~G~~-----~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~v~~p 103 (105)
T 1v70_A 45 VHEGSDKVYYALEGEV-----VVRVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP 103 (105)
T ss_dssp CCSSCEEEEEEEESCE-----EEEETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred CCCCCcEEEEEEeCEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEeCC
Confidence 3444455555544322 2333444566689999999999999999975422233344444
No 36
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=87.60 E-value=0.26 Score=44.30 Aligned_cols=38 Identities=24% Similarity=0.593 Sum_probs=30.7
Q ss_pred cccCccc-cCCCCc-ccccccccCccCc----ccchhhhHHHhh
Q 038377 346 FKYNRLY-CCSCKT-SIVDYHRSCASCS----YTLCLSCCRDIL 383 (979)
Q Consensus 346 ~~~DERv-CDnCkT-SIvD~HRSC~~Cs----yDLCL~CC~ELR 383 (979)
......+ ||.|.. +|+-+--.|..|. ||||..|-...+
T Consensus 16 ~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 16 FVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp SCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred CCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 3445678 999996 8999888899995 999999987433
No 37
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=87.56 E-value=0.29 Score=40.60 Aligned_cols=47 Identities=23% Similarity=0.657 Sum_probs=33.7
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
....|.-|...-..-+.-..|+ ..||..||.+|.. ....||+||..-
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-H~fc~~Ci~~~~~-----~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-HAFCYVCITRWIR-----QNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-EEESTTHHHHHHH-----HSCSTTTTCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-CeeHHHHHHHHHh-----CcCcCcCCChhh
Confidence 3457888886543334556788 5699999999973 235899998754
No 38
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=87.32 E-value=0.19 Score=45.59 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=29.6
Q ss_pred hCccceeE-eeecCceeEecCCCcccccccccc--chhhccccCCcc
Q 038377 887 FEIEPWTF-EQHVGEAVIIPAGCPYQIRNLKSC--VNVVLDFISPEN 930 (979)
Q Consensus 887 yGVEpWTF-~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAlDFVSPEn 930 (979)
+.|..-++ .=..||++|||+|.||+++|..+. .-+.+.|-+|+.
T Consensus 60 ~~i~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i~~~~~~~ 106 (117)
T 2b8m_A 60 LTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVKAPHPKK 106 (117)
T ss_dssp EEETTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEEECSCGGG
T ss_pred EEECCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCCCC
Confidence 33444444 567899999999999999998653 334444444443
No 39
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A
Probab=87.31 E-value=0.24 Score=52.28 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=51.5
Q ss_pred CCCCcCcccccCHhhHHHHHHHh--------Cccce----------eEeeecCceeEecCCCccccccccccc-hhhccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEF--------EIEPW----------TFEQHVGEAVIIPAGCPYQIRNLKSCV-NVVLDF 925 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEy--------GVEpW----------TF~Q~lGEAVFIPAGCPHQVRNLkSCI-KVAlDF 925 (979)
.||-.+..||+-.-.- .+ .. |-+|| ++.=..||.||||+|+||..+|.-.-- ++.+=+
T Consensus 60 ~H~~~~E~~yVLeG~~-~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~~~~~~~~~l~~ 136 (239)
T 2xlg_A 60 IHYFINEWFWTPEGGI-EL--FHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTDKTLPIVFVW 136 (239)
T ss_dssp EESSEEEEEEETTCCC-EE--EEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSSSCEEEEEEE
T ss_pred ECCCccEEEEEEEeEE-EE--EEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence 4565667777654432 11 12 44666 788889999999999999999976532 221333
Q ss_pred c----------CCcchHHHHHHHHHhh
Q 038377 926 I----------SPENVTECIQLIDEIR 942 (979)
Q Consensus 926 V----------SPEnV~eC~rLteEfR 942 (979)
+ +|..+.++|+...+..
T Consensus 137 ~~~~~~~~~~~~p~~~e~~f~~l~~~~ 163 (239)
T 2xlg_A 137 MRNEVAPDFPYHDGGMREYFQAVGPRI 163 (239)
T ss_dssp EECSSCTTCSCTTCSHHHHHHHHSCBC
T ss_pred EecccChhhccCcchHHHHHHHhhhhc
Confidence 4 8888999998887654
No 40
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=87.25 E-value=0.25 Score=43.75 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=31.0
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccc--eeEeeecCceeEecCCCccccccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEP--WTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEp--WTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
.||-.++-+|+..-.- ++-+.. =++.=..||+|+||||.||+++|.-+
T Consensus 35 ~H~~~~e~~~Vl~G~~-----~~~~~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g~ 84 (97)
T 2fqp_A 35 RHSMDYVVVPMTTGPL-----LLETPEGSVTSQLTRGVSYTRPEGVEHNVINPSD 84 (97)
T ss_dssp ECCSCEEEEESSCEEE-----EEEETTEEEEEEECTTCCEEECTTCEEEEECCSS
T ss_pred ECCCCcEEEEEeecEE-----EEEeCCCCEEEEEcCCCEEEeCCCCcccCEeCCC
Confidence 4553334666654322 233332 33445779999999999999999864
No 41
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=86.99 E-value=0.19 Score=45.33 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=34.0
Q ss_pred cCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccch
Q 038377 869 LDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVN 920 (979)
Q Consensus 869 HDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIK 920 (979)
+++-+|+-.-.- ++.|..=++.=..||++|||||.||.++|...|.=
T Consensus 58 ~~e~~~vl~G~~-----~~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~ 104 (114)
T 2ozj_A 58 GDTLYLILQGEA-----VITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKM 104 (114)
T ss_dssp SCEEEEEEEEEE-----EEEETTEEEEECTTCEEEECTTCCBEEEEEEEEEE
T ss_pred CCeEEEEEeCEE-----EEEECCEEEEecCCCEEEECCCCcEEEEeCCCcEE
Confidence 355566544332 35566667777899999999999999999866543
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=86.58 E-value=0.38 Score=41.04 Aligned_cols=47 Identities=23% Similarity=0.654 Sum_probs=33.1
Q ss_pred ccCCcccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 219 RRRKRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 219 ~~~~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
.....|.=|+..- ...+.-..|+ ..||..||.+|+... ..||+||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~~-----~~CP~Cr~~ 61 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCN-HLFHDSCIVPWLEQH-----DSCPVCRKS 61 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTS-CEEETTTTHHHHTTT-----CSCTTTCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCC-CeecHHHHHHHHHcC-----CcCcCcCCc
Confidence 3456899997643 2333334577 579999999998532 589999875
No 43
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=86.47 E-value=0.22 Score=54.80 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=33.7
Q ss_pred eEeeecCceeEecCCCccccccccccchhhccccCC-cchHH
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISP-ENVTE 933 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP-EnV~e 933 (979)
++.=+.||+||||||.||+++|.... +..+=|.+| ..++.
T Consensus 292 ~~~l~~Gd~~~iPag~~h~~~~~~~~-~~~l~~~~g~~g~~~ 332 (350)
T 1juh_A 292 ATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVSSGSDGLDQ 332 (350)
T ss_dssp CEEECTTCEEEECTTCCEEEEESSSS-EEEEEEEESSSSHHH
T ss_pred EEEeCCCCEEEECCCCCEEEEecCCe-EEEEEEecCccchhh
Confidence 44558899999999999999998766 788888888 77766
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=86.20 E-value=0.38 Score=47.02 Aligned_cols=49 Identities=24% Similarity=0.527 Sum_probs=36.6
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCG 273 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CN 273 (979)
...+|.-|...-...|.+..|+ ..||..||.+|...- ...||.||....
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECL-HRFCADCIITALRSG----NKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTC-CEEEHHHHHHHHHTT----CCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCC-ChhHHHHHHHHHHhC----cCCCCCCCCcCC
Confidence 3458999976445566677898 679999999997531 356999998754
No 45
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=86.18 E-value=0.23 Score=43.87 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=30.2
Q ss_pred CccceeEeeecCceeEecCCCccccccccccchhhccccCCcc
Q 038377 888 EIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPEN 930 (979)
Q Consensus 888 GVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 930 (979)
-|..=++.=..||+++||+|.||+.+|..+---+.+-+++|..
T Consensus 58 ~~~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v~~~~~ 100 (113)
T 2gu9_A 58 IVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPPA 100 (113)
T ss_dssp EETTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEEESCC
T ss_pred EECCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEEECCCC
Confidence 3444456678999999999999999998653333444555543
No 46
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=86.09 E-value=0.22 Score=49.14 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=40.6
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCcccccccc-ccchhhccccCCc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLK-SCVNVVLDFISPE 929 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk-SCIKVAlDFVSPE 929 (979)
.|+ ++|.+|+-.-.- ++-|..=++.=..||+||||+|.||+++|.. +--=+.+-+++|+
T Consensus 73 ~H~-~~E~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~ 132 (167)
T 3ibm_A 73 RHE-HTHVVMVVRGHA-----EVVLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSD 132 (167)
T ss_dssp BCS-SCEEEEEEESEE-----EEEETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEEEESS
T ss_pred cCC-CcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEEEeCC
Confidence 455 677777655432 3445555777789999999999999999987 4322334455555
No 47
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=85.87 E-value=0.29 Score=42.64 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=22.5
Q ss_pred eEeeecCceeEecCCCccccccccccc
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKSCV 919 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkSCI 919 (979)
++.=..||++|||+|.+|+++|...|.
T Consensus 69 ~~~l~~Gd~~~ip~~~~H~~~~~~~~~ 95 (102)
T 3d82_A 69 NITLQAGEMYVIPKGVEHKPMAKEECK 95 (102)
T ss_dssp EEEEETTEEEEECTTCCBEEEEEEEEE
T ss_pred EEEEcCCCEEEECCCCeEeeEcCCCCE
Confidence 455578999999999999999986553
No 48
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=85.75 E-value=0.23 Score=45.50 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=33.1
Q ss_pred CcccccCHhhHHHHHHHhCcc-ceeEeeecCceeEecCCCccccccccccch
Q 038377 870 DQNFFLDATHKMRLKEEFEIE-PWTFEQHVGEAVIIPAGCPYQIRNLKSCVN 920 (979)
Q Consensus 870 DQ~fYLt~ehk~kLkEEyGVE-pWTF~Q~lGEAVFIPAGCPHQVRNLkSCIK 920 (979)
++.+|+-.-.- ++-|. .-++.=..||+||||||.||+.+|....-|
T Consensus 50 ~E~~~Vl~G~~-----~~~i~~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~ 96 (101)
T 1o5u_A 50 NETCYILEGKV-----EVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRK 96 (101)
T ss_dssp CEEEEEEEEEE-----EEEETTCCEEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred eEEEEEEeCEE-----EEEECCCCEEEECCCCEEEECCCCcEEEEeCCCeeE
Confidence 55566543322 34555 567777899999999999999999776544
No 49
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=85.31 E-value=0.43 Score=43.44 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=35.8
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
....|--|...-..-|....|+ ..||..||..|.... ..||.||...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~-----~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECL-HSFCKTCIVRYLETS-----KYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTC-CEEEHHHHHHHHTSC-----SBCTTTCCBS
T ss_pred CcCCCccCChHHhCcCEeCCCC-ChhhHHHHHHHHHhC-----CcCcCCCccc
Confidence 4568999976544455556888 679999999998753 6899998754
No 50
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=85.26 E-value=0.29 Score=48.05 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
.|+ +.|-+|+..-.- ++-|..=++.=..||+||||+|++|+++|..+---+-+-+++|+
T Consensus 61 ~H~-~~E~~~Vl~G~~-----~v~v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~~~~ 119 (156)
T 3kgz_A 61 RHA-HVHAVMIHRGHG-----QCLVGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAA 119 (156)
T ss_dssp BCS-SCEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEEESS
T ss_pred eCC-CcEEEEEEeCEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEEeCC
Confidence 344 345555443322 23344446666889999999999999999865333334445554
No 51
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.22 E-value=0.22 Score=41.51 Aligned_cols=48 Identities=25% Similarity=0.641 Sum_probs=34.7
Q ss_pred ccCCcccccccCC------CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 219 RRRKRCHWCRRRG------QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 219 ~~~~~CHQC~r~d------~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
.....|-=|...- +..+.-..|+ ..||..||.+|... ...||+||..-
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~-----~~~CP~Cr~~~ 61 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN-----ANTCPTCRKKI 61 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTS-CEEEHHHHHHHHHH-----CSBCTTTCCBC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCC-ChHhHHHHHHHHHc-----CCCCCCCCCcc
Confidence 4566788887532 2445667887 67999999999743 35899999754
No 52
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.20 E-value=0.51 Score=39.74 Aligned_cols=46 Identities=26% Similarity=0.569 Sum_probs=33.2
Q ss_pred ccCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
.....|--|+..-...|.- .|+ ..||..||.+|+... ..||+||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~-~Cg-H~fC~~Ci~~~~~~~-----~~CP~Cr~~ 58 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSL-PCK-HVFCYLCVKGASWLG-----KRCALCRQE 58 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEE-TTT-EEEEHHHHHHCTTCS-----SBCSSSCCB
T ss_pred CCCCCCccCCcccCCCEEc-cCC-CHHHHHHHHHHHHCC-----CcCcCcCch
Confidence 3456899998654333332 587 669999999998653 689999875
No 53
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.11 E-value=0.2 Score=41.31 Aligned_cols=46 Identities=26% Similarity=0.678 Sum_probs=32.4
Q ss_pred cCCcccccccCC------CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRG------QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d------~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|--|...- ++.+.-..|+ ..||..||.+|... ...||+||..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~-----~~~CP~Cr~~ 65 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKN-----ANTCPTCRKK 65 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSS-CEEEHHHHHHHHHH-----CSSCTTTCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCC-ChhcHHHHHHHHHc-----CCCCCCCCCc
Confidence 445777777632 2334556787 67999999999743 4589999864
No 54
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=84.54 E-value=0.65 Score=52.15 Aligned_cols=60 Identities=18% Similarity=0.053 Sum_probs=49.6
Q ss_pred cCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchH
Q 038377 869 LDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVT 932 (979)
Q Consensus 869 HDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 932 (979)
|...+.++.. .|+ +.||.-.+|+|+.||.|++=.|+=|.|.|+--++..|..|..|+=+.
T Consensus 286 ~h~~~lisP~---~L~-~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~ 345 (373)
T 3opt_A 286 RHKMFLASPK---LLQ-ENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEEWLP 345 (373)
T ss_dssp TTSCEEECHH---HHH-TTTCCCEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEECCC----
T ss_pred hCCcccCCHH---HHH-hcCCceEEEEECCCCEEEECCCceEEEEecCccHHHHHccCcHHHHH
Confidence 4456777875 344 57999999999999999999999999999999999999999887654
No 55
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=84.34 E-value=0.21 Score=51.32 Aligned_cols=53 Identities=15% Similarity=0.086 Sum_probs=39.7
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVL 923 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 923 (979)
.|| +++.+|+-.--- ++.|..=++.=..||.++||||.||-++|+..|+=+..
T Consensus 54 ~h~-~~~~~~Vl~G~~-----~~~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 54 AML-GNRYYYCFNGNG-----EIFIENNKKTISNGDFLEITANHNYSIEARDNLKLIEI 106 (227)
T ss_dssp SCS-SCEEEEEEESEE-----EEEESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEE
T ss_pred ccC-CCEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEE
Confidence 677 788888755432 44555556666889999999999999999988765544
No 56
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=84.34 E-value=0.55 Score=42.00 Aligned_cols=47 Identities=23% Similarity=0.511 Sum_probs=34.8
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcc
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCG 273 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CN 273 (979)
...|--|...-..-|....|+ ..||..||.+|... ...||+||....
T Consensus 22 ~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~-----~~~CP~Cr~~~~ 68 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCS-HNYCSLCIRKFLSY-----KTQCPTCCVTVT 68 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTC-CEEEHHHHHHHHTT-----CCBCTTTCCBCC
T ss_pred CCCcccCChhhCCcCEECCCC-CHhhHHHHHHHHHC-----CCCCCCCCCcCC
Confidence 457888986544444556788 67999999999874 258999987643
No 57
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.29 E-value=0.33 Score=41.91 Aligned_cols=47 Identities=30% Similarity=0.717 Sum_probs=34.8
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCG 273 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CN 273 (979)
....|--|...-...|. ..|+ ..||..||.+|+.. ...||+||..-+
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~Cg-H~fC~~Ci~~~~~~-----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV-TKCR-HYFCESCALEHFRA-----TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEE-CTTS-CEEEHHHHHHHHHH-----CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeE-ccCC-CHhHHHHHHHHHHC-----CCcCCCcCcccc
Confidence 45689999765532333 5788 67999999999842 568999998765
No 58
>2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A*
Probab=83.87 E-value=0.31 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.3
Q ss_pred eeecCceeEecCCCccccccccc
Q 038377 895 EQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 895 ~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
.=..||++|+|||.+|+++|--+
T Consensus 62 ~l~aGd~~~~p~G~~H~~~N~g~ 84 (98)
T 2ozi_A 62 QLKTGRSYARKAGVQHDVRNEST 84 (98)
T ss_dssp CBCTTCCEEECTTCEEEEEECSS
T ss_pred EECCCCEEEECCCCceeCEECCC
Confidence 34789999999999999999765
No 59
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=83.57 E-value=0.23 Score=40.32 Aligned_cols=32 Identities=31% Similarity=0.883 Sum_probs=24.8
Q ss_pred eEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 234 LIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 234 vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
.+.-..|+ ..||..||.+|... ...||+||..
T Consensus 22 ~~~~~~Cg-H~fc~~Ci~~~~~~-----~~~CP~Cr~~ 53 (64)
T 2xeu_A 22 LIVSTECG-HVFCSQCLRDSLKN-----ANTCPTCRKK 53 (64)
T ss_dssp CEEEETTS-CEEEHHHHHHHHHH-----CSBCTTTCCB
T ss_pred CEEeCCCC-CchhHHHHHHHHHc-----CCCCCCCCcc
Confidence 44556787 66999999999743 4589999875
No 60
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=83.48 E-value=0.36 Score=47.65 Aligned_cols=55 Identities=7% Similarity=-0.026 Sum_probs=39.3
Q ss_pred CcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcc
Q 038377 870 DQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPEN 930 (979)
Q Consensus 870 DQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 930 (979)
++-+|+-.--- ++.|..=++.=..||+||||+|.||+.+|.-+--- .+-|+.|..
T Consensus 127 ~E~~~Vl~G~~-----~~~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~v~~~~~ 181 (192)
T 1y9q_A 127 IEYIHVLEGIM-----KVFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQNIVAYPR 181 (192)
T ss_dssp EEEEEEEESCE-----EEEETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEEEEECCC
T ss_pred EEEEEEEEeEE-----EEEECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEEEEecCc
Confidence 45566544322 45666777788999999999999999999855322 666777754
No 61
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}
Probab=83.44 E-value=0.24 Score=49.54 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=35.8
Q ss_pred CCCCcCcccccCH--hhHHHHHHHhCccceeEeeecCceeEecCCCcccccc
Q 038377 865 VHPILDQNFFLDA--THKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRN 914 (979)
Q Consensus 865 ~hPIHDQ~fYLt~--ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRN 914 (979)
.|+-+++.||+-. -.- ++-|..=++.=..||+||||+|.+|++.+
T Consensus 62 ~H~~~~E~~yVLe~~G~g-----~v~idge~~~l~~GD~v~IPpg~~H~i~g 108 (157)
T 4h7l_A 62 YHREHQEIYVVLDHAAHA-----TIELNGQSYPLTKLLAISIPPLVRHRIVG 108 (157)
T ss_dssp BCSSCEEEEEEEEECTTC-----EEEETTEEEECCTTEEEEECTTCCEEEES
T ss_pred ECCCCcEEEEEEecCcEE-----EEEECCEEEEeCCCCEEEECCCCeEeeEC
Confidence 6777788888766 332 45566667888999999999999999985
No 62
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=82.83 E-value=0.56 Score=44.76 Aligned_cols=44 Identities=27% Similarity=0.721 Sum_probs=31.1
Q ss_pred CcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 222 KRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 222 ~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
.+|.=|...-...|. ..|+ ..||..||.+|+... ..||+||..-
T Consensus 54 ~~C~iC~~~~~~~~~-~~Cg-H~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 97 (138)
T 4ayc_A 54 LQCIICSEYFIEAVT-LNCA-HSFCSYCINEWMKRK-----IECPICRKDI 97 (138)
T ss_dssp SBCTTTCSBCSSEEE-ETTS-CEEEHHHHHHHTTTC-----SBCTTTCCBC
T ss_pred CCCcccCcccCCceE-CCCC-CCccHHHHHHHHHcC-----CcCCCCCCcC
Confidence 468888764422232 3587 579999999998653 4699999754
No 63
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.76 E-value=0.57 Score=39.52 Aligned_cols=46 Identities=22% Similarity=0.575 Sum_probs=31.3
Q ss_pred cCCcccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|.=|+..- ...+.-..|+ ..||..||.+|... ...||+||..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~~~~~-----~~~CP~Cr~~ 61 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCK-HAFHRKCLIKWLEV-----RKVCPLCNMP 61 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTT-EEEEHHHHHHHHHH-----CSBCTTTCCB
T ss_pred CCCCCcCCCcccCCCCcEEEcCCC-CEecHHHHHHHHHc-----CCcCCCcCcc
Confidence 456788888753 2233223576 66999999999742 3489999863
No 64
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=82.43 E-value=0.5 Score=43.82 Aligned_cols=34 Identities=29% Similarity=0.697 Sum_probs=29.2
Q ss_pred cCccc-cCCCCc-ccccccccCccC-cccchhhhHHH
Q 038377 348 YNRLY-CCSCKT-SIVDYHRSCASC-SYTLCLSCCRD 381 (979)
Q Consensus 348 ~DERv-CDnCkT-SIvD~HRSC~~C-syDLCL~CC~E 381 (979)
....+ ||.|.. +|+-+--.|..| .||||..|-..
T Consensus 28 ~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~ 64 (98)
T 2dip_A 28 KHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDS 64 (98)
T ss_dssp SCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHT
T ss_pred ccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHcc
Confidence 45568 999996 799998899999 89999999664
No 65
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.28 E-value=0.28 Score=40.69 Aligned_cols=46 Identities=20% Similarity=0.502 Sum_probs=31.3
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
...+|--|...-...+. ..|+ ..||..||.+|+.. -...||.||..
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~Cg-H~fC~~Ci~~~~~~----~~~~CP~Cr~~ 59 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQ-TECG-HRFCESCMAALLSS----SSPKCTACQES 59 (66)
T ss_dssp CCEECTTTCCEESSCCC-CSSS-CCCCHHHHHHHHTT----SSCCCTTTCCC
T ss_pred cCCCCCCCChHhcCeeE-CCCC-CHHHHHHHHHHHHh----CcCCCCCCCcC
Confidence 34578888754322222 5788 66999999999852 23469999865
No 66
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=82.01 E-value=0.51 Score=42.10 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=35.2
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccc-eeEeeecCceeEecCCCccccccccccchhhccccCCcchH
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEP-WTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVT 932 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEp-WTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 932 (979)
.||-.++.+|+-.-.- ++.++. =++.=..||+++||+|.||..+|...|.=+ ++.|....
T Consensus 44 ~H~~~~E~~~Vl~G~~-----~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l---~i~~~~~~ 104 (107)
T 2i45_A 44 THGYSDKVLFAVEGDM-----AVDFADGGSMTIREGEMAVVPKSVSHRPRSENGCSLV---LIELSDPS 104 (107)
T ss_dssp CC--CCEEEEESSSCE-----EEEETTSCEEEECTTEEEEECTTCCEEEEEEEEEEEE---EEECC---
T ss_pred eCCCCCEEEEEEeCEE-----EEEECCCcEEEECCCCEEEECCCCcEeeEeCCCeEEE---EEECCCcc
Confidence 3443356666544332 233444 456668899999999999999997654322 44554433
No 67
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.99 E-value=0.5 Score=40.43 Aligned_cols=32 Identities=28% Similarity=0.841 Sum_probs=27.9
Q ss_pred c-cCCCCc-ccccccccCccC-cccchhhhHHHhh
Q 038377 352 Y-CCSCKT-SIVDYHRSCASC-SYTLCLSCCRDIL 383 (979)
Q Consensus 352 v-CDnCkT-SIvD~HRSC~~C-syDLCL~CC~ELR 383 (979)
+ ||.|.. +|+-+--.|..| .||||..|-..-+
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~ 46 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGH 46 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCC
Confidence 7 999996 599988899999 7999999988643
No 68
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=81.98 E-value=0.91 Score=51.16 Aligned_cols=62 Identities=15% Similarity=0.000 Sum_probs=53.7
Q ss_pred CcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHH
Q 038377 868 ILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTE 933 (979)
Q Consensus 868 IHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 933 (979)
+|...+.++.+. |+ +.||.-.+++|+.||.|++=.|+=|.|.|+--++..|..|..|.=+..
T Consensus 260 L~h~~~~isP~~---L~-~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~Wl~~ 321 (381)
T 2ox0_A 260 LRHKMTLISPLM---LK-KYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEY 321 (381)
T ss_dssp GGGSCEEECHHH---HH-HTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTTHHHH
T ss_pred hhccccccCHHH---HH-HCCCceEEEEecCCCEEEECCCcEEEeecCcccHHHHhccCcHHHHHH
Confidence 456678888853 33 579999999999999999999999999999999999999998876643
No 69
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=81.57 E-value=0.47 Score=40.44 Aligned_cols=47 Identities=17% Similarity=0.611 Sum_probs=32.7
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
...+|--|...-..-|.-..|+ ..||..||.+|+.... ...||+||.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~---~~~CP~Cr~ 60 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCG-NSYCDECIRTALLESD---EHTCPTCHQ 60 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSC-CEECTTHHHHHHHHSS---SSCCSSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCC-CHHHHHHHHHHHHhcC---CCcCCCCCC
Confidence 3468888976443334433488 6799999999985321 247999998
No 70
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=81.44 E-value=0.51 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=23.0
Q ss_pred eeEeeecCceeEecCCCcccccccc
Q 038377 892 WTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 892 WTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
-++.=..||+|+||+|.||+++|..
T Consensus 88 ~~~~l~~Gd~i~ip~~~~H~~~n~~ 112 (163)
T 1lr5_A 88 QEIPFFQNTTFSIPVNDPHQVWNSD 112 (163)
T ss_dssp EEEEECTTEEEEECTTCCEEEECCC
T ss_pred EEEEeCCCCEEEECCCCcEEeEeCC
Confidence 6777789999999999999999986
No 71
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=80.89 E-value=0.52 Score=45.36 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=37.9
Q ss_pred CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCC-CccccccccccchhhccccCC
Q 038377 866 HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAG-CPYQIRNLKSCVNVVLDFISP 928 (979)
Q Consensus 866 hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAG-CPHQVRNLkSCIKVAlDFVSP 928 (979)
|+-.++.+|+-.-.- ++-|..=++.=..||+|+||+| .+|+++|.-+---+.+-+.+|
T Consensus 65 H~~~~E~~~Vl~G~~-----~~~~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~~p 123 (162)
T 3l2h_A 65 HHYEEEAVYVLSGKG-----TLTMENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIGQR 123 (162)
T ss_dssp ESSCCEEEEEEESCE-----EEEETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEEEC
T ss_pred CCCCCEEEEEEEEEE-----EEEECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEECC
Confidence 333456566544322 3344455677789999999997 999999976543344555555
No 72
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=80.65 E-value=0.65 Score=44.28 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.4
Q ss_pred EeeecCceeEecCCCccccccccc
Q 038377 894 FEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 894 F~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
+.=..||+|+||+|.||+++|..+
T Consensus 90 ~~l~~Gd~i~ip~g~~H~~~n~~~ 113 (148)
T 2oa2_A 90 EEVFDDYAILIPAGTWHNVRNTGN 113 (148)
T ss_dssp EEEETTCEEEECTTCEEEEEECSS
T ss_pred EEECCCCEEEECCCCcEEEEECCC
Confidence 666899999999999999999753
No 73
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=80.52 E-value=0.55 Score=43.03 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=25.1
Q ss_pred hCccceeEeeecCceeEecCCCcccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
+.|..-++.=..||+||||+|.||+.+|..
T Consensus 61 ~~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~ 90 (125)
T 3cew_A 61 ITIDGEKIELQAGDWLRIAPDGKRQISAAS 90 (125)
T ss_dssp EEETTEEEEEETTEEEEECTTCCEEEEEBT
T ss_pred EEECCEEEEeCCCCEEEECCCCcEEEEcCC
Confidence 445556677789999999999999999984
No 74
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=80.44 E-value=0.47 Score=39.20 Aligned_cols=32 Identities=31% Similarity=0.974 Sum_probs=26.2
Q ss_pred cc-cCCCCcccccccccCccC-cccchhhhHHHhh
Q 038377 351 LY-CCSCKTSIVDYHRSCASC-SYTLCLSCCRDIL 383 (979)
Q Consensus 351 Rv-CDnCkTSIvD~HRSC~~C-syDLCL~CC~ELR 383 (979)
.+ ||+|...| -.--.|..| .||||..|-..-.
T Consensus 6 ~~~Cd~C~~~i-g~R~~C~~C~dyDLC~~C~~~~~ 39 (52)
T 1tot_A 6 VYTCNECKHHV-ETRWHCTVCEDYDLCINCYNTKS 39 (52)
T ss_dssp CEEETTTTEEE-SSEEEESSSSSCEECHHHHHHHC
T ss_pred EEECCCCCCCC-cceEEcCCCCCchhHHHHHhCCC
Confidence 35 99999996 566778899 7999999987643
No 75
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=79.96 E-value=0.27 Score=45.02 Aligned_cols=40 Identities=23% Similarity=0.549 Sum_probs=27.5
Q ss_pred ceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcc
Q 038377 233 SLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCG 273 (979)
Q Consensus 233 ~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CN 273 (979)
.++.-..|+ ..||..||..|...........||.||..-.
T Consensus 54 ~~~~~~~C~-H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 54 VVGRLTKCS-HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CCEEESSSC-CEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cceecCCCC-CcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 355567787 7899999999983211123458999997643
No 76
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=79.95 E-value=0.59 Score=46.34 Aligned_cols=31 Identities=16% Similarity=-0.064 Sum_probs=24.8
Q ss_pred hCccceeEeeecCceeEecCCCccccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
+-|..=++.=..||+||||+|.||+++|...
T Consensus 86 ~~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 116 (166)
T 3jzv_A 86 AMVGRAVSAVAPYDLVTIPGWSWHQFRAPAD 116 (166)
T ss_dssp EEETTEEEEECTTCEEEECTTCCEEEECCTT
T ss_pred EEECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 3444556666889999999999999999654
No 77
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=79.89 E-value=1.9 Score=49.31 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=27.0
Q ss_pred hCccceeEeeecCceeEecCCCcccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
+|...+.++=.+||+.|||+|.+|+|+.+.
T Consensus 194 ~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~ 223 (442)
T 2xdv_A 194 IGRPVHEFMLKPGDLLYFPRGTIHQADTPA 223 (442)
T ss_dssp SCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred cCCcceEEEECCCcEEEECCCceEEEEecC
Confidence 566678899999999999999999999986
No 78
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.73 E-value=1 Score=41.68 Aligned_cols=45 Identities=27% Similarity=0.670 Sum_probs=33.3
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
...+|--|...-..-|.-..|+ ..||..||..|.. ..||.||...
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~Cg-H~fC~~Ci~~~~~-------~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCE-HIFCSNCVSDCIG-------TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSS-CCBCTTTGGGGTT-------TBCSSSCCBC
T ss_pred hCCCCCCCChHhhCccEeCCCC-CHHHHHHHHHHhc-------CCCcCCCCcC
Confidence 3568888976443333333677 7899999999986 7899999874
No 79
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=79.36 E-value=0.65 Score=43.00 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=33.5
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
.|+ ..+-+|+..-.- ++.|..=++.=..||++|||+|.||+.+|..+
T Consensus 65 ~H~-~~e~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~ 111 (126)
T 1vj2_A 65 SHP-WEHEIFVLKGKL-----TVLKEQGEETVEEGFYIFVEPNEIHGFRNDTD 111 (126)
T ss_dssp CCS-SCEEEEEEESEE-----EEECSSCEEEEETTEEEEECTTCCEEEECCSS
T ss_pred eCC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEECCCCcEEeEeCCC
Confidence 455 566677654432 34445555666789999999999999999864
No 80
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.87 E-value=0.86 Score=36.32 Aligned_cols=44 Identities=30% Similarity=0.776 Sum_probs=30.9
Q ss_pred cCCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCC
Q 038377 220 RRKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVC 268 (979)
Q Consensus 220 ~~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~C 268 (979)
....|--|...- ..++ ..|+ ..||..||.+|+..+. ....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~--~~Cg-H~fC~~Ci~~~~~~~~--~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVI--IECG-HNFCKACITRWWEDLE--RDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCC--CSSC-CCCCHHHHHHHTTSSC--CSCCCSCC
T ss_pred cCCCCccCCcccCccEe--CCCC-CccCHHHHHHHHHhcC--CCCCCCCC
Confidence 456888898755 2222 4687 6699999999976532 24679988
No 81
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=78.69 E-value=0.84 Score=42.74 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=35.9
Q ss_pred CcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccc-cccchhhccccCCc
Q 038377 868 ILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNL-KSCVNVVLDFISPE 929 (979)
Q Consensus 868 IHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNL-kSCIKVAlDFVSPE 929 (979)
-+|+.+|+-.-.- ++-+..=++.=..||+||||||.+|..+|. ..+. .+--++|-
T Consensus 58 ~~~E~~~Vl~G~~-----~~~~~g~~~~l~~GD~v~ip~g~~H~~~~~~~~~~--~l~v~~P~ 113 (119)
T 3lwc_A 58 AVDDVMIVLEGRL-----SVSTDGETVTAGPGEIVYMPKGETVTIRSHEEGAL--TAYVTYPH 113 (119)
T ss_dssp SSEEEEEEEEEEE-----EEEETTEEEEECTTCEEEECTTCEEEEEEEEEEEE--EEEEEECC
T ss_pred CCCEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCEEEEEcCCCCeE--EEEEECCC
Confidence 3477777655332 233344466668999999999999999997 3333 33445553
No 82
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=78.59 E-value=0.71 Score=42.73 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=39.8
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccc-eeEeeecCceeEecCCCccccccccccchhhccccCCcch
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEP-WTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENV 931 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEp-WTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 931 (979)
.|+-.++.+|+-.-.- ++-+.. =++.=..||+|+||+|.||..+|...-. ..+-+++|...
T Consensus 60 ~H~~~~E~~~vl~G~~-----~~~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~-~~l~~~~p~~~ 121 (134)
T 2o8q_A 60 THTVGFQLFYVLRGWV-----EFEYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDL-EVLEIVSPAGF 121 (134)
T ss_dssp EECCSCEEEEEEESEE-----EEEETTTEEEEEETTCEEECCTTCCEEEEEECTTC-EEEEEESSTTC
T ss_pred ECCCCcEEEEEEeCEE-----EEEECCcEEEEecCCCEEEECCCCcEEeEeCCCCe-EEEEEECCCch
Confidence 3454466666644332 344444 5677789999999999999999965422 33445666543
No 83
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=78.58 E-value=0.6 Score=39.80 Aligned_cols=52 Identities=27% Similarity=0.573 Sum_probs=35.3
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcH-HHHHhhCCCCCCCcc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQ-EDVKKACPVCRGTCG 273 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~-edi~~~CP~CRg~CN 273 (979)
....|.-|...-..-+. ..|+ ..||..||..|+.... ......||+||....
T Consensus 18 ~~~~C~IC~~~~~~p~~-~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVS-ADCN-HSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSSCEE-CTTS-CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCccee-CCCC-CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34689999875522223 3587 5799999999986521 223578999987643
No 84
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=78.40 E-value=0.44 Score=40.45 Aligned_cols=52 Identities=19% Similarity=0.413 Sum_probs=35.4
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCc--HHHHHhhCCCCCCCcc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDT--QEDVKKACPVCRGTCG 273 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~--~edi~~~CP~CRg~CN 273 (979)
...+|--|...-...+. ..|+ ..||..||.+|+... .......||+||....
T Consensus 11 ~~~~C~IC~~~~~~p~~-l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELLTEPLS-LDCG-HSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEECSSCCC-CSSS-CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCcccCCeeE-CCCC-CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 45678888865422222 3687 679999999998762 1223568999997654
No 85
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=78.23 E-value=0.76 Score=45.51 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=42.3
Q ss_pred CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchH
Q 038377 866 HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVT 932 (979)
Q Consensus 866 hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 932 (979)
|.=+|+.+|+-+-.- ++-|.+=++.=..||+||||+|.||..+|...|..+++ ++|-+..
T Consensus 81 ~~~~eE~~yVLeG~~-----~l~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~l~V--~~P~~~~ 140 (151)
T 4axo_A 81 TLNYDEIDYVIDGTL-----DIIIDGRKVSASSGELIFIPKGSKIQFSVPDYARFIYV--TYPADWA 140 (151)
T ss_dssp ECSSEEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE--EECSCC-
T ss_pred eCCCcEEEEEEEeEE-----EEEECCEEEEEcCCCEEEECCCCEEEEEeCCCEEEEEE--ECCCCcc
Confidence 334677777655332 33455667777899999999999999999988877766 4454433
No 86
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=77.42 E-value=1 Score=41.18 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=40.9
Q ss_pred CcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCcccccccc--ccchhhccccCCcchHHHHHHHHHhhcCCc
Q 038377 870 DQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLK--SCVNVVLDFISPENVTECIQLIDEIRLLPT 946 (979)
Q Consensus 870 DQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~eC~rLteEfR~Lp~ 946 (979)
.+-+|+..-.- ++-|..=++.=..||++|||+|.+|+++|.. .+.-+++ +++|+-+. .+..+...-|.
T Consensus 55 ~Ei~~v~~G~~-----~~~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i-~f~~~~~~---~~~~~~~~~~~ 124 (128)
T 4i4a_A 55 YELFIVIQGNA-----IIRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI-WWDKESTL---NFLTRLEQDHH 124 (128)
T ss_dssp EEEEEEEESEE-----EEEETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEE-EECHHHHH---HHHHHHHHC--
T ss_pred eEEEEEEeCEE-----EEEECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEE-EECHHHHH---HHHHhcccccc
Confidence 45555543322 3455566777799999999999999999963 2333333 34555444 35555554443
No 87
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=77.35 E-value=0.89 Score=45.72 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=30.4
Q ss_pred cceeEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 890 EPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 890 EpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
+.+++.=..||+|+||+|.||+.+|.-+--=+.+.+++|.
T Consensus 117 ~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~~~l~v~~~~ 156 (190)
T 1x82_A 117 DAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIFLAIYPAD 156 (190)
T ss_dssp CEEEEEECTTCEEEECTTCEEEEEECSSSCEEEEEEEETT
T ss_pred cEEEEEECCCcEEEECCCCeEEEEECCcccEEEEEEECCC
Confidence 4456888999999999999999999865433445555664
No 88
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.02 E-value=0.71 Score=38.12 Aligned_cols=46 Identities=20% Similarity=0.569 Sum_probs=29.6
Q ss_pred CcccccccC---C-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 222 KRCHWCRRR---G-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 222 ~~CHQC~r~---d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
.+|--|... + ...+.=..|+ ..||..||.+|+... ...||.||..-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~----~~~CP~Cr~~~ 53 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVRG----AGNCPECGTPL 53 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTC-CCEEHHHHHHHHHTT----SSSCTTTCCCC
T ss_pred CcCCcCCCCccCCCccCeecCCCC-CHhHHHHHHHHHHcC----CCcCCCCCCcc
Confidence 356677661 2 2111125788 679999999997532 35799998753
No 89
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.92 E-value=0.88 Score=38.06 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=33.8
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
....|--|...-...+.- .|+ ..||..||.+|+... .....||+||..-
T Consensus 19 ~~~~C~IC~~~~~~~~~~-~Cg-H~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTI-DCG-HNFCLKCITQIGETS--CGFFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBCSSEEEC-TTC-CEEEHHHHHHHCSSS--CSCCCCSSSCCCC
T ss_pred cCCEeccCCcccCCeEEc-CCC-ChhhHHHHHHHHHcC--CCCCCCCCCCCcC
Confidence 456888898754333332 788 669999999998631 1235799998753
No 90
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=76.86 E-value=0.91 Score=46.60 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=36.1
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCcccccc-cccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRN-LKSC 918 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRN-LkSC 918 (979)
.|| ++|.+|+-.-.- ++.|..=++.=..||+|+||||+||.++| ...|
T Consensus 170 ~H~-~~e~~~Vl~G~~-----~~~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~ 218 (227)
T 3rns_A 170 KAP-GDALVTVLDGEG-----KYYVDGKPFIVKKGESAVLPANIPHAVEAETENF 218 (227)
T ss_dssp CCS-SEEEEEEEEEEE-----EEEETTEEEEEETTEEEEECTTSCEEEECCSSCE
T ss_pred ECC-CcEEEEEEeEEE-----EEEECCEEEEECCCCEEEECCCCcEEEEeCCCCE
Confidence 567 678777655433 45555556777899999999999999999 6654
No 91
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=76.72 E-value=0.45 Score=52.32 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=50.4
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccc-----eeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHH
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEP-----WTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLID 939 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEp-----WTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLte 939 (979)
.|+-+++.||+-.-.- ++-|.. -++.=..||.|+||+|.||..+|.-.-. ..+-+++|....+-|+-..
T Consensus 67 ~H~~~~E~~~Vl~G~~-----~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~l~v~~p~~~~~~f~~l~ 140 (350)
T 1juh_A 67 IHQKHYENFYCNKGSF-----QLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EMTGVIVPGGFEDLFYYLG 140 (350)
T ss_dssp ECSSCEEEEEEEESEE-----EEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EEEEEEESSCTTHHHHHHS
T ss_pred cCCCceEEEEEEEEEE-----EEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EEEEEEcCccHHHHHHHhc
Confidence 3555567777654332 455555 7788899999999999999999986544 6677888988776655443
No 92
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=76.45 E-value=1.1 Score=41.18 Aligned_cols=45 Identities=20% Similarity=0.518 Sum_probs=32.1
Q ss_pred CCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 221 RKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 221 ~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
...|.=|...- ..++. .|+ ..||..||.+|.... ...||+||..-
T Consensus 15 ~~~C~iC~~~~~~p~~~--~Cg-H~fC~~Ci~~~~~~~----~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL--PCN-HTLCKPCFQSTVEKA----SLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSBCSSCEEC--TTS-CEECHHHHCCCCCTT----TSBCTTTCCBC
T ss_pred CCCCccCCcccCceeEc--CCC-CHHhHHHHHHHHhHC----cCCCCCCCccc
Confidence 35788888654 33332 787 679999999998642 25799998754
No 93
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=76.05 E-value=0.5 Score=48.94 Aligned_cols=47 Identities=17% Similarity=0.028 Sum_probs=35.9
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeE-ecCCCccccccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVI-IPAGCPYQIRNLKS 917 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVF-IPAGCPHQVRNLkS 917 (979)
.|| +.|-+|+-.-.- ++-|..=++.=..||+|| ||+|.||+++|..+
T Consensus 51 ~H~-~~e~~~Vl~G~~-----~~~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~ 98 (243)
T 3h7j_A 51 QHK-EVQIGMVVSGEL-----MMTVGDVTRKMTALESAYIAPPHVPHGARNDTD 98 (243)
T ss_dssp CCS-SEEEEEEEESEE-----EEEETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred ECC-CcEEEEEEEeEE-----EEEECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence 577 788888755433 445555566678999997 99999999999876
No 94
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3
Probab=75.53 E-value=0.91 Score=49.64 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=14.6
Q ss_pred ecCceeEecCCCcccc
Q 038377 897 HVGEAVIIPAGCPYQI 912 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQV 912 (979)
++|||+|||||.||=.
T Consensus 163 ~pGd~~~ipaGt~HA~ 178 (319)
T 1qwr_A 163 KPGDFYYVPSGTLHAL 178 (319)
T ss_dssp CTTCEEEECTTCCEEE
T ss_pred CCCCEEEcCCCCceEe
Confidence 6899999999999963
No 95
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=75.26 E-value=1.2 Score=43.50 Aligned_cols=49 Identities=22% Similarity=0.526 Sum_probs=34.1
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcccc
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCK 275 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CNCk 275 (979)
...|--|...-..-|. ..|+ ..||..||..|+... ...||+||....-.
T Consensus 78 ~~~C~IC~~~~~~pv~-~~Cg-H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVT-TECF-HNVCKDCLQRSFKAQ----VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEE-CTTS-CEEEHHHHHHHHHTT----CCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEE-cCCC-CchhHHHHHHHHHhC----CCcCCCCCccCCCC
Confidence 3578888765432223 6888 679999999998641 13699999876543
No 96
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=75.16 E-value=1 Score=44.51 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=31.5
Q ss_pred CcccccCHhhHHHHHHHhCccc----eeEeeecCceeEecCCCccccccc
Q 038377 870 DQNFFLDATHKMRLKEEFEIEP----WTFEQHVGEAVIIPAGCPYQIRNL 915 (979)
Q Consensus 870 DQ~fYLt~ehk~kLkEEyGVEp----WTF~Q~lGEAVFIPAGCPHQVRNL 915 (979)
++.+|+-.-.- ++.|.. =++.=..||+||||+|.||+++|.
T Consensus 141 ~E~~~Vl~G~~-----~~~~~~~~~~~~~~l~~GD~~~~~~~~~H~~~n~ 185 (198)
T 2bnm_A 141 NEFLFVLEGEI-----HMKWGDKENPKEALLPTGASMFVEEHVPHAFTAA 185 (198)
T ss_dssp CEEEEEEESCE-----EEEESCTTSCEEEEECTTCEEEECTTCCEEEEES
T ss_pred eEEEEEEeeeE-----EEEECCcCCcccEEECCCCEEEeCCCCceEEEec
Confidence 56677644332 455666 677778999999999999999998
No 97
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=74.96 E-value=1.1 Score=47.73 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=46.9
Q ss_pred CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHH
Q 038377 866 HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLI 938 (979)
Q Consensus 866 hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLt 938 (979)
||-.++-+|+..-.- ++-|..-++.=..||.++||+|+||+.+|... --..+-+++|....+-++-.
T Consensus 236 H~~~~e~~~vl~G~~-----~~~i~~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~~ 302 (337)
T 1y3t_A 236 HEYHTETFYCLEGQM-----TMWTDGQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRTL 302 (337)
T ss_dssp CSSCEEEEEEEESCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHHH
T ss_pred CCCCcEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHHh
Confidence 443345555544332 35566667888999999999999999999876 34456677888887655443
No 98
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=74.93 E-value=1 Score=44.08 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=39.4
Q ss_pred CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCC--CccccccccccchhhccccCCc
Q 038377 866 HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAG--CPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 866 hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAG--CPHQVRNLkSCIKVAlDFVSPE 929 (979)
|+-.++-||+..-.- ++-|..=++.=..||+||||+| .+|+++|.-+---+.+-+.+|-
T Consensus 62 H~~~eE~~~Vl~G~~-----~~~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~ 122 (163)
T 3i7d_A 62 HMEQDEFVMVTEGAL-----VLVDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVGTRT 122 (163)
T ss_dssp ESSCCEEEEEEESCE-----EEEETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred CCCCcEEEEEEECEE-----EEEECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence 343356677654433 3445555677789999999999 9999999865444445555543
No 99
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3
Probab=74.72 E-value=0.98 Score=49.05 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=14.4
Q ss_pred ecCceeEecCCCcccc
Q 038377 897 HVGEAVIIPAGCPYQI 912 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQV 912 (979)
++|||+|||||.||=.
T Consensus 163 ~pGd~~~ipaGt~HA~ 178 (300)
T 1zx5_A 163 TPYDTFVIRPGIPHAG 178 (300)
T ss_dssp CTTCEEEECTTCCEEE
T ss_pred CCCCEEEcCCCCceEc
Confidence 7899999999999953
No 100
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=74.71 E-value=0.92 Score=42.99 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=24.8
Q ss_pred EeeecCceeEecCCCccccccccccchhhc
Q 038377 894 FEQHVGEAVIIPAGCPYQIRNLKSCVNVVL 923 (979)
Q Consensus 894 F~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 923 (979)
+.=..||+|+||+|.||..+|+...-|+-+
T Consensus 89 ~~l~~GD~~~ip~g~~h~~~~~~~~rK~yv 118 (123)
T 3bcw_A 89 HAVKAGDAFIMPEGYTGRWEVDRHVKKIYF 118 (123)
T ss_dssp EEEETTCEEEECTTCCCEEEEEEEEEEEEE
T ss_pred EEECCCCEEEECCCCeEEEEECCceeEEEE
Confidence 344789999999999999999987776543
No 101
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.71 E-value=0.7 Score=39.35 Aligned_cols=52 Identities=21% Similarity=0.472 Sum_probs=35.2
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCc-HHHHHhhCCCCCCCcc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDT-QEDVKKACPVCRGTCG 273 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~-~edi~~~CP~CRg~CN 273 (979)
....|.-|...-...+. ..|+ ..||..||..|+... ...-...||+||....
T Consensus 18 ~~~~C~IC~~~~~~p~~-~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLS-LDCG-HSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCSSCBC-CSSS-CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccCCcee-CCCC-CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34688889875422222 3687 679999999998652 1223578999987754
No 102
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=73.89 E-value=0.9 Score=39.89 Aligned_cols=49 Identities=16% Similarity=0.568 Sum_probs=33.4
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
....|.-|...-..-|.-..|+ ..||..||..|+.... ...||.||...
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~---~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCG-NSYCDECIRTALLESD---EHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTC-CEECHHHHHHHHHHCT---TCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCC-CHHHHHHHHHHHHhcC---CCcCcCCCCcC
Confidence 4568999986443233334488 7799999999975211 25899999754
No 103
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=73.88 E-value=1 Score=40.75 Aligned_cols=49 Identities=18% Similarity=0.508 Sum_probs=33.1
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcc
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCG 273 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CN 273 (979)
...|--|...-...+. ..|+ ..||..||.+|..... -...||+||....
T Consensus 21 ~~~C~IC~~~~~~p~~-~~Cg-H~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCD-HIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTS-CCCCSHHHHHHHHSSS--SSCCCTTTSCCCC
T ss_pred CCCCcccChhhcCeEE-CCCC-CHHHHHHHHHHHHhCC--CCCCCcCCCCcCC
Confidence 4578888764422222 4787 6799999999986431 1147999987644
No 104
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=73.09 E-value=1.9 Score=36.95 Aligned_cols=41 Identities=27% Similarity=0.738 Sum_probs=30.6
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
...|--|.......|. ..|+-..||..|+.+| ..||+||..
T Consensus 24 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~---------~~CP~Cr~~ 64 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV---------DKCPMCYTV 64 (74)
T ss_dssp HTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC---------SBCTTTCCB
T ss_pred CCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC---------ccCCCcCcC
Confidence 4689999876533222 4787555999999999 889999964
No 105
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=72.48 E-value=1.8 Score=43.73 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=28.8
Q ss_pred eEeeecCceeEecCCCccccccccccchhhccccCCcc
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPEN 930 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 930 (979)
++.=..||+++||+|.+|.++|.-.---+++-+.++.+
T Consensus 120 ~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~ 157 (201)
T 1fi2_A 120 SRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157 (201)
T ss_dssp EEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSC
T ss_pred EEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCC
Confidence 56668899999999999999998654344555566555
No 106
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=72.16 E-value=1.1 Score=41.84 Aligned_cols=47 Identities=26% Similarity=0.567 Sum_probs=32.5
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcc
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCG 273 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CN 273 (979)
...|.-|...-..-|. ..|+ ..||..||..|... -...||.||....
T Consensus 52 ~~~C~IC~~~~~~p~~-~~Cg-H~fC~~Ci~~~~~~----~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 52 TFQCICCQELVFRPIT-TVCQ-HNVCKDCLDRSFRA----QVFSCPACRYDLG 98 (124)
T ss_dssp HTBCTTTSSBCSSEEE-CTTS-CEEEHHHHHHHHHT----TCCBCTTTCCBCC
T ss_pred CCCCCcCChHHcCcEE-eeCC-CcccHHHHHHHHhH----CcCCCCCCCccCC
Confidence 3578888865422222 3787 67999999999852 1237999997764
No 107
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=71.82 E-value=1.4 Score=41.31 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=31.2
Q ss_pred CcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccc
Q 038377 870 DQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 870 DQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
.+-+|+..-.- ++.|..-++.=..||++|||+|.||+.+|.-.
T Consensus 79 ~E~~~Vl~G~~-----~~~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~ 121 (133)
T 1o4t_A 79 FEIYYILLGEG-----VFHDNGKDVPIKAGDVCFTDSGESHSIENTGN 121 (133)
T ss_dssp EEEEEEEESEE-----EEEETTEEEEEETTEEEEECTTCEEEEECCSS
T ss_pred cEEEEEEeCEE-----EEEECCEEEEeCCCcEEEECCCCcEEeEECCC
Confidence 45556544332 34455667777899999999999999999753
No 108
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.44 E-value=1.3 Score=38.69 Aligned_cols=32 Identities=22% Similarity=0.676 Sum_probs=24.4
Q ss_pred eEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 234 LIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 234 vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
++.-..|+ ..|+..||.+|...- ..||+||..
T Consensus 42 ~~~~~~C~-H~FH~~Ci~~Wl~~~-----~~CP~CR~~ 73 (81)
T 2ecl_A 42 VVVWGECN-HSFHNCCMSLWVKQN-----NRCPLCQQD 73 (81)
T ss_dssp CEEEETTS-CEEEHHHHHHHTTTC-----CBCTTTCCB
T ss_pred EEEeCCCC-CccChHHHHHHHHhC-----CCCCCcCCC
Confidence 44444687 679999999998653 489999965
No 109
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=71.44 E-value=2.8 Score=48.67 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=55.1
Q ss_pred CCccceeeccCCCC--CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccc--cchhhccccC
Q 038377 852 CGAQWDVFRREDVV--HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS--CVNVVLDFIS 927 (979)
Q Consensus 852 ~GAlWDIFRreDv~--hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS--CIKVAlDFVS 927 (979)
|--.|-||.+.|.. -|-....=| +. .+.+-..+.++-.+||..|||.|.+|||+++-. +|.+++-+-.
T Consensus 194 G~KrWrL~~P~~~~~~lp~~~~~~~-~~-------~~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~~~SlhlTi~~~~ 265 (489)
T 4diq_A 194 GRKLWRVYRPRAPTEELALTSSPNF-SQ-------DDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQ 265 (489)
T ss_dssp ECEEEEEECCSSGGGTTCSSCCCCC-CG-------GGCCCCSEEEEECTTCEEEECTTCEEEEEBCSSCCEEEEEEEECT
T ss_pred eEEEEEEeCCCCccccCCCcccccC-Cc-------ccccCcceEEEECCCCEEEECCCCceEEEecCCCceEEEeecccC
Confidence 34578898887652 222111111 11 134567789999999999999999999999953 5666655543
Q ss_pred C------------cchHHHHHHHHHhhc-CCccc
Q 038377 928 P------------ENVTECIQLIDEIRL-LPTDH 948 (979)
Q Consensus 928 P------------EnV~eC~rLteEfR~-Lp~~H 948 (979)
+ .-+..-+.=-.|||+ ||-+.
T Consensus 266 ~~tw~dll~~ll~~al~~a~~~d~~~R~~LP~~~ 299 (489)
T 4diq_A 266 RNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDF 299 (489)
T ss_dssp TCBHHHHHHHHHHHHHHHHHHHCGGGGSBCCTTG
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHhhccCChhH
Confidence 3 112222222357885 99764
No 110
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=71.21 E-value=1.7 Score=41.58 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=25.4
Q ss_pred EeeecCceeEecCCCccccccccccchhhccccCC
Q 038377 894 FEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISP 928 (979)
Q Consensus 894 F~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 928 (979)
+.=..||+|+||+|.||+.+|...---+.+-++.|
T Consensus 89 ~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~~ 123 (147)
T 2f4p_A 89 RILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQ 123 (147)
T ss_dssp EEEETTCEEEECTTCCEEEEEBTTBCEEEEEEECC
T ss_pred EEECCCCEEEECCCCcEEeEeCCCCCEEEEEEEcc
Confidence 55579999999999999999986533233444443
No 111
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=71.13 E-value=1 Score=43.62 Aligned_cols=48 Identities=17% Similarity=0.429 Sum_probs=33.9
Q ss_pred ccCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
....+|--|...-..-|. +.|+ ..||..||.+|.... ...||.||...
T Consensus 29 ~~~~~C~IC~~~~~~pv~-~~Cg-H~FC~~Ci~~~~~~~----~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQ-AQCG-HRYCSFCLASILSSG----PQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEE-CTTS-CEEEHHHHHHHGGGS----CEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEE-CCCC-CccCHHHHHHHHhcC----CCCCCCCCCcc
Confidence 355689999875432333 5898 679999999998521 24799888654
No 112
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=70.87 E-value=1.5 Score=40.25 Aligned_cols=46 Identities=26% Similarity=0.685 Sum_probs=31.7
Q ss_pred CCcccccccCC------CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 221 RKRCHWCRRRG------QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 221 ~~~CHQC~r~d------~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
..+|-=|...- ++.+.-..|+ ..||..||.+|.... ..||+||..-
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~-----~~CP~Cr~~~ 58 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKNA-----NTCPTCRKKI 58 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTC-CEEEHHHHHHHHTTC-----SBCTTTCCBC
T ss_pred CCCCcccChhhhCccccccCeEecCCC-ChhhHHHHHHHHHhC-----CCCCCCCCcC
Confidence 45677776422 2334556888 679999999997653 3899988644
No 113
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=70.62 E-value=2.2 Score=36.18 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=32.7
Q ss_pred cCCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
....|--|+.-- ..|+ ..|+ ..||..||.+|+..- ...||+||..-
T Consensus 7 ~~~~C~IC~~~~~~Pv~--~~Cg-H~fc~~Ci~~~~~~~----~~~CP~C~~~~ 53 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVI--VSTG-QTYERSSIQKWLDAG----HKTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCCSSEEE--ETTT-EEEEHHHHHHHHTTT----CCBCTTTCCBC
T ss_pred ccCCCCCccccccCCEE--cCCC-CeecHHHHHHHHHHC----cCCCCCCcCCC
Confidence 346788888754 3333 3688 779999999999631 35799998653
No 114
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=70.49 E-value=1.4 Score=46.13 Aligned_cols=47 Identities=4% Similarity=0.049 Sum_probs=33.2
Q ss_pred CCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccc
Q 038377 866 HPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 866 hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
|+-.++.+|+-.-.- ++.|..=++.=..||+||||||+||+.+|.-.
T Consensus 197 H~~~~E~~~Vl~G~~-----~~~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~ 243 (261)
T 1rc6_A 197 THVQEHGAYILSGQG-----VYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGR 243 (261)
T ss_dssp EESSCEEEEEEESEE-----EEESSSCEEEEETTCEEEECSSEEEEEEEC--
T ss_pred CCCceEEEEEEEeEE-----EEEECCEEEEeCCCCEEEECCCCcEEeEeCCC
Confidence 344456666644332 45566667778999999999999999999854
No 115
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*
Probab=69.22 E-value=1.5 Score=49.31 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=14.2
Q ss_pred ecCceeEecCCCccc
Q 038377 897 HVGEAVIIPAGCPYQ 911 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQ 911 (979)
++|||+|||||.||=
T Consensus 245 ~pGd~~fipAG~~HA 259 (394)
T 2wfp_A 245 NPGEAMFLFAETPHA 259 (394)
T ss_dssp CTTCEEEECTTCCEE
T ss_pred CCCCEEEcCCCCceE
Confidence 789999999999995
No 116
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.89 E-value=0.72 Score=38.48 Aligned_cols=44 Identities=25% Similarity=0.739 Sum_probs=32.2
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|--|...-.. .-..|+ ..||..||.+|... ...||+||..
T Consensus 14 ~~~~C~IC~~~~~~--~~~~Cg-H~fc~~Ci~~~~~~-----~~~CP~Cr~~ 57 (70)
T 2ecn_A 14 DEEECCICMDGRAD--LILPCA-HSFCQKCIDKWSDR-----HRNCPICRLQ 57 (70)
T ss_dssp CCCCCSSSCCSCCS--EEETTT-EEECHHHHHHSSCC-----CSSCHHHHHC
T ss_pred CCCCCeeCCcCccC--cccCCC-CcccHHHHHHHHHC-----cCcCCCcCCc
Confidence 45689999876533 234677 66999999999873 5679998854
No 117
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=67.31 E-value=1.9 Score=45.76 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=44.3
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHH
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQ 936 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~r 936 (979)
.|+-.++.+|+-.-.- ++.|..-++.=..||.|+||+|.||..+|...- -..+.+++|....+-++
T Consensus 63 ~H~~~~e~~~Vl~G~~-----~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~~~~~~p~~~~~~~~ 128 (337)
T 1y3t_A 63 VHKDTHEGILVLDGKL-----ELTLDGERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSYTMKGNVAHLYS 128 (337)
T ss_dssp ECTTCCEEEEEEESCE-----EEEETTEEEEECTTCEEEECTTCCEEEEECSTT-EEEEEEEETTSSTHHHH
T ss_pred eCCCceEEEEEEECEE-----EEEECCEEEEECCCCEEEECCCCcEEEEECCCC-eEEEEEECCCCHHHHHH
Confidence 3443456666544322 345556677778999999999999999998762 23455667777666443
No 118
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=67.09 E-value=2 Score=45.36 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=31.9
Q ss_pred CcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccc
Q 038377 870 DQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 870 DQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
++-+|+-.-.- +|.|..-++.=..||+||||||+||+.+|.-.
T Consensus 204 ~E~~yVl~G~~-----~~~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~ 246 (274)
T 1sef_A 204 EHGAYLISGQG-----MYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGR 246 (274)
T ss_dssp CEEEEEEECEE-----EEEETTEEEEEETTCEEEECTTCCEEEEEECS
T ss_pred eEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 45555543322 45566667778999999999999999999755
No 119
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=67.00 E-value=1.9 Score=39.60 Aligned_cols=46 Identities=26% Similarity=0.659 Sum_probs=32.9
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
...|--|...-...|. ..|+ ..||..||.+|.... ...||.||...
T Consensus 23 ~~~C~IC~~~~~~p~~-~~Cg-H~fC~~Ci~~~~~~~----~~~CP~Cr~~~ 68 (116)
T 1rmd_A 23 SISCQICEHILADPVE-TSCK-HLFCRICILRCLKVM----GSYCPSCRYPC 68 (116)
T ss_dssp HTBCTTTCSBCSSEEE-CTTS-CEEEHHHHHHHHHHT----CSBCTTTCCBC
T ss_pred CCCCCCCCcHhcCcEE-cCCC-CcccHHHHHHHHhHC----cCcCCCCCCCC
Confidence 4578888765433333 5888 779999999998542 34799998753
No 120
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3
Probab=66.67 E-value=1.9 Score=49.41 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=14.5
Q ss_pred eecCceeEecCCCccc
Q 038377 896 QHVGEAVIIPAGCPYQ 911 (979)
Q Consensus 896 Q~lGEAVFIPAGCPHQ 911 (979)
=++|||+|||||.||=
T Consensus 270 L~pGea~flpAg~~HA 285 (440)
T 1pmi_A 270 LNKGEAMFLQAKDPHA 285 (440)
T ss_dssp ECTTCEEEECTTCCEE
T ss_pred cCCCCEEecCCCCccc
Confidence 3789999999999995
No 121
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=66.53 E-value=1.5 Score=47.51 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=34.9
Q ss_pred eEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHHHhhcCCc
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRLLPT 946 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~ 946 (979)
++.=..||+++||+|+||+++|.-+--=+.+-|++|.+... +.|+.=++.+|.
T Consensus 279 ~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 331 (361)
T 2vqa_A 279 VSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQS-IDLSTWLASNPS 331 (361)
T ss_dssp EEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCC-EEHHHHHHTSCH
T ss_pred EEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcce-eeHHHHhhhCCH
Confidence 55667899999999999999998543224455566654332 234445666664
No 122
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=66.18 E-value=1.6 Score=40.41 Aligned_cols=46 Identities=22% Similarity=0.508 Sum_probs=32.0
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|--|+..-..-|. ..|+ ..||..||.+|.... ...||.||..
T Consensus 17 ~~~~C~IC~~~~~~p~~-~~Cg-H~fC~~Ci~~~~~~~----~~~CP~Cr~~ 62 (118)
T 3hct_A 17 SKYECPICLMALREAVQ-TPCG-HRFCKACIIKSIRDA----GHKCPVDNEI 62 (118)
T ss_dssp GGGBCTTTCSBCSSEEE-CTTS-CEEEHHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCCcCChhhcCeEE-CCcC-ChhhHHHHHHHHhhC----CCCCCCCCCC
Confidence 34689999865533333 3688 679999999997532 1289999754
No 123
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=65.95 E-value=2 Score=39.42 Aligned_cols=47 Identities=26% Similarity=0.632 Sum_probs=33.7
Q ss_pred ccCCcccccccCC------CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 219 RRRKRCHWCRRRG------QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 219 ~~~~~CHQC~r~d------~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
.....|--|...- ++.+....|+ ..||..||.+|.. ....||+||..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~-----~~~~CP~Cr~~ 122 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLK-----NANTCPTCRKK 122 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-BEEEHHHHHHHHH-----HCSBCTTTCCB
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-ChhhHHHHHHHHH-----cCCCCCCCCCc
Confidence 4556788887532 2344566787 7799999999974 24689999964
No 124
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=65.30 E-value=2.3 Score=40.57 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=36.1
Q ss_pred cCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhc
Q 038377 869 LDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVL 923 (979)
Q Consensus 869 HDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 923 (979)
.++.+|+-.-.- ++-+..=++.=..||++|||+|.||..+|...+.++.+
T Consensus 75 ~~E~~~VLeG~~-----~l~~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~l~v 124 (133)
T 2pyt_A 75 YDEIDMVLEGEL-----HVRHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYV 124 (133)
T ss_dssp SEEEEEEEEEEE-----EEEETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEE
T ss_pred CCEEEEEEECEE-----EEEECCEEEEECCCcEEEECCCCEEEEEeCCCEEEEEE
Confidence 577777744322 33444556677899999999999999999877766553
No 125
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.13 E-value=1.9 Score=37.17 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=33.4
Q ss_pred cCCcccccccCCC---ceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcc
Q 038377 220 RRKRCHWCRRRGQ---SLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCG 273 (979)
Q Consensus 220 ~~~~CHQC~r~d~---~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CN 273 (979)
....|--|...-. ....-..|+ ..||..||.+|.... .-...||+||....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCG-HTICRQCLEKLLASS--INGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSS-CEEEHHHHHHHHHHC--SSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCC-ChhhHHHHHHHHHcC--CCCcCCCCCCCccc
Confidence 3457888886431 112334687 679999999997532 01367999997643
No 126
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=65.07 E-value=2.1 Score=46.05 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=22.7
Q ss_pred hCccceeEeeecCceeEecCCCccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNL 915 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNL 915 (979)
|.+..=.++=..||++|||+||||+..|.
T Consensus 220 y~l~~~~~~V~~GD~i~~~~~~~h~~~n~ 248 (266)
T 4e2q_A 220 YRLGDNWYPVQAGDVIWMAPFVPQWYAAL 248 (266)
T ss_dssp EEETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred EEECCEEEEecCCCEEEECCCCcEEEEeC
Confidence 44444445557899999999999999986
No 127
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=64.07 E-value=3 Score=41.93 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=25.9
Q ss_pred hCccceeEeeecCceeEecCCCccccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
+-|..=+|.=..||+++||||.||..+|.-+
T Consensus 123 vtl~g~~~~L~~Gds~~iP~g~~H~~~N~~d 153 (166)
T 2vpv_A 123 VTVCKNKFLSVKGSTFQIPAFNEYAIANRGN 153 (166)
T ss_dssp EEETTEEEEEETTCEEEECTTCEEEEEECSS
T ss_pred EEECCEEEEEcCCCEEEECCCCCEEEEECCC
Confidence 4455567777899999999999999999765
No 128
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.61 E-value=1.6 Score=35.60 Aligned_cols=45 Identities=22% Similarity=0.475 Sum_probs=30.1
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVC 268 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~C 268 (979)
....|--|...-...|.- .|+ ..||..||.+|.... .-...||+|
T Consensus 19 ~~~~C~IC~~~~~~p~~~-~Cg-H~fC~~Ci~~~~~~~--~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTI-DCG-HNFCLKCITQIGETS--CGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEEC-TTS-SEECHHHHHHHHHHC--SSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEe-CCC-CcchHHHHHHHHHcC--CCCCcCcCC
Confidence 456899998654222222 788 669999999998521 123479988
No 129
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=61.98 E-value=2.5 Score=39.28 Aligned_cols=31 Identities=19% Similarity=0.668 Sum_probs=24.0
Q ss_pred EecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 235 IKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 235 V~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
+.-..|+ ..|+..||..|... ...||.||..
T Consensus 68 ~~~~~C~-H~FH~~Ci~~Wl~~-----~~~CP~Cr~~ 98 (106)
T 3dpl_R 68 VAWGVCN-HAFHFHCISRWLKT-----RQVCPLDNRE 98 (106)
T ss_dssp EEEETTS-CEEEHHHHHHHHTT-----CSBCSSSCSB
T ss_pred EeecccC-cEECHHHHHHHHHc-----CCcCcCCCCc
Confidence 3445687 67999999999764 4689999964
No 130
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=61.48 E-value=2.2 Score=46.80 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.9
Q ss_pred ceeEeeecCceeEecCCCccccccccc
Q 038377 891 PWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 891 pWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
.-++.=..||+++||+|+||+++|.-+
T Consensus 300 ~~~~~l~~GD~~~ip~~~~H~~~n~~~ 326 (385)
T 1j58_A 300 ARTFNYQAGDVGYVPFAMGHYVENIGD 326 (385)
T ss_dssp EEEEEEESSCEEEECTTCBEEEEECSS
T ss_pred EEEEEEcCCCEEEECCCCeEEEEECCC
Confidence 445666799999999999999999854
No 131
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=60.83 E-value=2.9 Score=44.52 Aligned_cols=43 Identities=19% Similarity=0.382 Sum_probs=31.1
Q ss_pred CcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCCccccccccc
Q 038377 870 DQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 870 DQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
++.+|+-.-.- ++.|..=++.=..||++|||||.||+++|.-+
T Consensus 91 eE~~~Vl~G~l-----~v~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~ 133 (278)
T 1sq4_A 91 EAVLFVVEGEL-----SLTLQGQVHAMQPGGYAFIPPGADYKVRNTTG 133 (278)
T ss_dssp EEEEEEEESCE-----EEEESSCEEEECTTEEEEECTTCCEEEECCSS
T ss_pred eEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCcEEEEECCC
Confidence 55566543322 34455567777899999999999999999843
No 132
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=59.50 E-value=3.3 Score=45.66 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=36.4
Q ss_pred CcccccCHhhHHHHHHHh-CccceeEeeecCceeEecCCCccccccccccchhhccccCC
Q 038377 870 DQNFFLDATHKMRLKEEF-EIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISP 928 (979)
Q Consensus 870 DQ~fYLt~ehk~kLkEEy-GVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 928 (979)
.+-+|+-.-.- +| -|.+=++.=..||+|+||+|.+|+.+|.-+---+-++|..|
T Consensus 121 ~e~~yVl~G~g-----~~t~v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~d~ 175 (354)
T 2d40_A 121 SALRFIVEGKG-----AFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGLDL 175 (354)
T ss_dssp CEEEEEEECSS-----CEEEETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEECH
T ss_pred ceEEEEEEEEE-----EEEEECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEECc
Confidence 45566543321 34 45666788899999999999999999985422234566554
No 133
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.13 E-value=3.8 Score=33.13 Aligned_cols=43 Identities=23% Similarity=0.656 Sum_probs=28.8
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
...+|--|...-..- .-..|+ ..||..||..| ...||+||..-
T Consensus 5 ~~~~C~IC~~~~~~p-~~l~Cg-H~fC~~Ci~~~--------~~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP-KLLPCL-HTLCSGCLEAS--------GMQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCBCC-SCSTTS-CCSBTTTCSSS--------SSSCSSCCSSS
T ss_pred cCCCceEeCCccCCe-EEcCCC-CcccHHHHccC--------CCCCCcCCcEe
Confidence 345788887644211 124576 67999999985 45799998753
No 134
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=57.18 E-value=4.4 Score=45.77 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=25.1
Q ss_pred ccceeEeeecCceeEecCCCcccccccc
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
|.+-+|.-..||+||||+|.+||+.|.-
T Consensus 329 V~ge~~~~~~GD~~~iP~g~~H~~~N~g 356 (394)
T 3bu7_A 329 VGGKRFDWSEHDIFCVPAWTWHEHCNTQ 356 (394)
T ss_dssp ETTEEEEECTTCEEEECTTCCEEEEECC
T ss_pred ECCEEEEEeCCCEEEECCCCeEEeEeCC
Confidence 4677899999999999999999999974
No 135
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=56.94 E-value=4.6 Score=40.06 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.0
Q ss_pred ceeEeeecCceeEecCCCccccccccc
Q 038377 891 PWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 891 pWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
.-++.=..||+++||+|.||..+|.-+
T Consensus 82 ~~~~~l~~GDv~~~P~g~~H~~~N~g~ 108 (178)
T 1dgw_A 82 RDTYKLDQGDAIKIQAGTPFYLINPDN 108 (178)
T ss_dssp EEEEEEETTEEEEECTTCCEEEEECCS
T ss_pred cEEEEECCCCEEEECCCCeEEEEeCCC
Confidence 346666889999999999999999854
No 136
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=56.94 E-value=4.6 Score=45.27 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.5
Q ss_pred CccceeEeeecCceeEecCCCcccccccc
Q 038377 888 EIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 888 GVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
-|.+=+|.=..||+||||+|+.|++.|--
T Consensus 138 ~vdG~~~~~~~GD~v~iP~g~~H~~~N~g 166 (368)
T 3nw4_A 138 VVNGDPVRMSRGDLLLTPGWCFHGHMNDT 166 (368)
T ss_dssp EETTEEEEEETTCEEEECTTCCEEEEECS
T ss_pred EECCEEEEEeCCCEEEECCCCcEEeEeCC
Confidence 36777888899999999999999999964
No 137
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=56.54 E-value=3.1 Score=46.98 Aligned_cols=47 Identities=23% Similarity=0.730 Sum_probs=33.6
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcc
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCG 273 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CN 273 (979)
...|.=|...-.. +....|+ ..||..||..|... -...||+||....
T Consensus 332 ~~~C~ICle~~~~-pv~lpCG-H~FC~~Ci~~wl~~----~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKD-VKIEPCG-HLMCTSCLTSWQES----EGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCC-EEEETTC-CEECHHHHHHHHHH----TCSBCTTTCCBCC
T ss_pred CCCCCccCcCCCC-eEEeCCC-ChhhHHHHHHHHhc----CCCCCCCCCCccC
Confidence 3689999865532 3346788 56899999999751 2358999997653
No 138
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=55.60 E-value=5.5 Score=36.26 Aligned_cols=44 Identities=5% Similarity=-0.007 Sum_probs=31.8
Q ss_pred CCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 221 RKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 221 ~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
...|-=|+.-- --|+ ..|+...||-.||.+|... ...||+|+..
T Consensus 22 ~~~CpI~~~~m~dPV~--~~cG~htf~r~cI~~~l~~-----~~~cP~~~~~ 66 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVV--LPSSRVTVDRSTIARHLLS-----DQTDPFNRSP 66 (98)
T ss_dssp TTBCTTTCSBCSSEEE--CTTTCCEEEHHHHHHHTTT-----SCBCTTTCSB
T ss_pred hcCCcCccccccCCeE--CCCCCeEECHHHHHHHHHh-----CCCCCCCCCC
Confidence 34677776544 2333 5688788999999999875 2589999865
No 139
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=55.30 E-value=2.5 Score=40.19 Aligned_cols=26 Identities=23% Similarity=0.770 Sum_probs=0.0
Q ss_pred CCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 239 SCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 239 ~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.|+ ..|+..||..|... ...||.||.
T Consensus 83 ~C~-H~FH~~CI~~Wl~~-----~~~CP~Cr~ 108 (117)
T 4a0k_B 83 VCN-HAFHFHCISRWLKT-----RQVCPLDNR 108 (117)
T ss_dssp --------------------------------
T ss_pred CcC-ceEcHHHHHHHHHc-----CCcCCCCCC
Confidence 566 67999999999765 468999986
No 140
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=54.60 E-value=3.9 Score=34.18 Aligned_cols=48 Identities=29% Similarity=0.615 Sum_probs=33.8
Q ss_pred ccCCcccccccCCCc-eEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 219 RRRKRCHWCRRRGQS-LIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~-vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....+|-=|..+... ++.-..|+=..||.+|+.+|... ...||+||..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----~~~CPiCR~~ 54 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-----NKPCPVCRQP 54 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-----TCCCTTTCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-----CCcCCCcCcc
Confidence 345689999877633 33234677556999999998732 3579999974
No 141
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=53.89 E-value=4.5 Score=42.08 Aligned_cols=32 Identities=16% Similarity=0.064 Sum_probs=25.6
Q ss_pred hCccceeEeeecCceeEecCCCcccccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSC 918 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSC 918 (979)
+.|..=++.=..||+++||||.||+++|...+
T Consensus 81 ~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~ 112 (246)
T 1sfn_A 81 VAVGGETRTLREYDYVYLPAGEKHMLTAKTDA 112 (246)
T ss_dssp EECSSCEEEECTTEEEEECTTCCCEEEEEEEE
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCCE
Confidence 44555566668899999999999999998544
No 142
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A
Probab=52.24 E-value=7.5 Score=39.30 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=26.0
Q ss_pred eEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
++.=..||.|+||||.||...+-..--=+|+.|-+++
T Consensus 123 ~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~ 159 (179)
T 1zrr_A 123 QVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP 159 (179)
T ss_dssp EEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred EEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC
Confidence 4556899999999999999887655222344444443
No 143
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=50.73 E-value=5.3 Score=41.91 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=31.8
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCcc-ceeEeeecCceeEecCCCccccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEIE-PWTFEQHVGEAVIIPAGCPYQIRNL 915 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGVE-pWTF~Q~lGEAVFIPAGCPHQVRNL 915 (979)
.|| ++|.+|+=.-.- ||.|+ .=+|.=..||.||||+|.||-+|+.
T Consensus 149 sHp-~EEiy~VLsG~~-----e~~v~~g~~~~l~pGd~v~ipsgv~Ha~rt~ 194 (217)
T 4b29_A 149 EHL-PEELYSVVSGRA-----LFHLRNAPDLMLEPGQTRFHPANAPHAMTTL 194 (217)
T ss_dssp ECS-SEEEEEEEEECE-----EEEETTSCCEEECTTCEEEECTTCCEEEECC
T ss_pred CCC-CceEEEEEeCCE-----EEEECCCCEEecCCCCEEEcCCCCceeEEEC
Confidence 677 566655533221 57665 4455668999999999999999864
No 144
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=50.47 E-value=3.9 Score=44.23 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=32.7
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCc---cc--eeEeeecCceeEecCCCcccccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEI---EP--WTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGV---Ep--WTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
.||=.++-+|+..-.- ++.| ++ -++.=..||++|||+|.||..+|.-
T Consensus 69 ~H~~~~E~~yVl~G~~-----~~~v~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~ 120 (361)
T 2vqa_A 69 WHANAAEWAYVMEGRT-----RITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIG 120 (361)
T ss_dssp ECTTCCEEEEEEESEE-----EEEEECTTSCEEEEEEETTEEEEECTTCEEEEEECS
T ss_pred eCCCCCEEEEEEEeEE-----EEEEEeCCCcEEEEEEcCCCEEEECCCCeEEEEeCC
Confidence 3554466677644321 3445 33 5566678999999999999999985
No 145
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=50.38 E-value=6 Score=38.05 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=36.3
Q ss_pred CCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCC
Q 038377 867 PILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGC 908 (979)
Q Consensus 867 PIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGC 908 (979)
|.|...-.+.+.+-+.|.++|||.-|.| +-||-|.|=||=
T Consensus 16 p~h~rrk~msa~LskeLr~ky~vr~~~I--kkGD~V~Vi~G~ 55 (120)
T 1vq8_T 16 PLHERHKQVRATLSADLREEYGQRNVRV--NAGDTVEVLRGD 55 (120)
T ss_dssp CGGGSGGGGEEEECHHHHHHHTCSEEEC--CTTCEEEECSST
T ss_pred CcchhhheeeCcCCHHHHHhhccccccc--cCCCEEEEEecC
Confidence 8888989999999999999999999987 679999999983
No 146
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=49.98 E-value=5.9 Score=41.18 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=25.9
Q ss_pred HhCccceeEeeecCceeEecCCCcccccccc
Q 038377 886 EFEIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 886 EyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
+|-+..=++.=..||.+|++|||||+.+|.-
T Consensus 198 ~~~~~~~~~~l~~GD~~~~~~~~pH~~~n~g 228 (246)
T 1sfn_A 198 LYKLEENYYPVTAGDIIWMGAHCPQWYGALG 228 (246)
T ss_dssp EEEETTEEEEEETTCEEEECTTCCEEEEEES
T ss_pred EEEECCEEEEcCCCCEEEECCCCCEEEEcCC
Confidence 4666666667789999999999999999964
No 147
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.66 E-value=8.3 Score=32.82 Aligned_cols=41 Identities=27% Similarity=0.738 Sum_probs=29.0
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
..+|--|.......|. ..|+-..||..|+.+. ..||+||..
T Consensus 25 ~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~~---------~~CP~Cr~~ 65 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV---------DKCPMCYTV 65 (75)
T ss_dssp HHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHHC---------SBCTTTCCB
T ss_pred CCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhCC---------CCCccCCce
Confidence 4589999876533322 5687444999999653 689999975
No 148
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=49.17 E-value=9.7 Score=33.16 Aligned_cols=42 Identities=24% Similarity=0.603 Sum_probs=30.3
Q ss_pred CCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 221 RKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 221 ~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
..+|-=|......+|. ..|+=..||..|+..|. .||+||..-
T Consensus 18 ~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~---------~CP~Cr~~i 59 (79)
T 2yho_A 18 AMLCMVCCEEEINSTF-CPCGHTVCCESCAAQLQ---------SCPVCRSRV 59 (79)
T ss_dssp HTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTCS---------BCTTTCCBC
T ss_pred CCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhcC---------cCCCCCchh
Confidence 3578888765532222 46885569999999883 999999864
No 149
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=49.14 E-value=5.2 Score=39.05 Aligned_cols=46 Identities=22% Similarity=0.493 Sum_probs=32.8
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|--|...-..-|.+ .|+ ..||..||.+|.... ...||.||..
T Consensus 17 ~~~~C~IC~~~~~~pv~~-~Cg-H~fC~~Ci~~~~~~~----~~~CP~Cr~~ 62 (170)
T 3hcs_A 17 SKYECPICLMALREAVQT-PCG-HRFCKACIIKSIRDA----GHKCPVDNEI 62 (170)
T ss_dssp GGGBCTTTCSBCSSEEEC-TTS-CEEEHHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCCCCChhhcCcEEC-CCC-CHHHHHHHHHHHHhC----CCCCCCCccC
Confidence 456899998755334454 798 679999999998531 1289998753
No 150
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=48.64 E-value=5.6 Score=42.29 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=26.0
Q ss_pred HhCccceeEeeecCceeEecCCCccccccccc
Q 038377 886 EFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 886 EyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
+|-+..=++.=..||.+|+|+||||+.+|.-.
T Consensus 224 ~~~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~ 255 (278)
T 1sq4_A 224 VYRLNQDWVEVEAGDFMWLRAFCPQACYSGGP 255 (278)
T ss_dssp EEEETTEEEEEETTCEEEEEESCCEEEECCSS
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEEcCCC
Confidence 45566666667899999999999999999653
No 151
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=48.51 E-value=5.7 Score=46.08 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=25.2
Q ss_pred ecCceeEecCCCccccccccccchhhccccCCc
Q 038377 897 HVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
..||+|+||||.||-..|.-+--=|++-|+.+-
T Consensus 118 ~~GDvi~iPaG~~h~~~N~g~~~l~~v~~~d~~ 150 (493)
T 2d5f_A 118 NEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTS 150 (493)
T ss_dssp ETTEEEEECTTCCEEEEECSSSCEEEEEEECTT
T ss_pred cCCCEEEECCCCcEEEEeCCCCCEEEEEEecCc
Confidence 679999999999999999977444554444433
No 152
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=48.19 E-value=6.3 Score=39.65 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=25.6
Q ss_pred eEeeecCceeEecCCCccccccccccchhhccccCC
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISP 928 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 928 (979)
++.=..||++ ||+|.||+.+|.-.---..+-.++|
T Consensus 119 ~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~~P 153 (172)
T 3es1_A 119 KRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFILIE 153 (172)
T ss_dssp EEEECTTCEE-EECSCCBEEECCSSSCEEEEEEEEE
T ss_pred EEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEEcC
Confidence 4555789999 9999999999986643344444444
No 153
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=47.88 E-value=6.6 Score=41.34 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=25.0
Q ss_pred hCccceeEeeecCceeEecCCCccccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
+.|..=++.=..||+++||||.||+.+|.-+
T Consensus 97 ~~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~ 127 (274)
T 1sef_A 97 VSDGQETHELEAGGYAYFTPEMKMYLANAQE 127 (274)
T ss_dssp EECSSCEEEEETTEEEEECTTSCCEEEESSS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 4444556666889999999999999999854
No 154
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.83 E-value=7.3 Score=37.48 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=36.1
Q ss_pred CCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCC
Q 038377 867 PILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAG 907 (979)
Q Consensus 867 PIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAG 907 (979)
|.|...-++.+.+=+.|.++|||.-|.| +-||-|.|=+|
T Consensus 19 p~h~r~k~msa~LSkeLR~ky~~r~~~I--kkGD~V~Vi~G 57 (121)
T 3j21_U 19 PLHVRQKLMSAPLSRELREKYKVRNLPV--RVGDKVRIMRG 57 (121)
T ss_dssp CTTGGGGGSEEEBCHHHHHHTCCSEEEC--CSSSEEEECSS
T ss_pred CcchhhhhhcCcCCHHHHHHhCCccccc--ccCCEEEEeec
Confidence 8899999999999999999999999998 68999999998
No 155
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=47.41 E-value=5.8 Score=42.57 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=20.4
Q ss_pred eEeeecCceeEecCCCcccccccc
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
++.=..||++++|||.|||++|-.
T Consensus 110 ~~~L~~Gds~y~p~~~~H~~~N~~ 133 (266)
T 4e2q_A 110 SKKLTVDSYAYLPPNFHHSLDCVE 133 (266)
T ss_dssp CEEECTTEEEEECTTCCCEEEESS
T ss_pred EEEEcCCCEEEECCCCCEEEEeCC
Confidence 445578999999999999999953
No 156
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=47.39 E-value=5.6 Score=34.84 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=31.0
Q ss_pred CCcccccccCC----CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcc
Q 038377 221 RKRCHWCRRRG----QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCG 273 (979)
Q Consensus 221 ~~~CHQC~r~d----~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CN 273 (979)
...|-=|...- ..+..| .|+ ..||..||.++..+ -...||.||..-.
T Consensus 11 ~~~CpICle~~~~~d~~~~p~-~CG-H~fC~~Cl~~~~~~----~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPC-TCG-YQICRFCWHRIRTD----ENGLCPACRKPYP 61 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSS-TTS-CCCCHHHHHHHTTS----SCSBCTTTCCBCS
T ss_pred CCcCCccCccCcccccccccc-CCC-CCcCHHHHHHHHhc----CCCCCCCCCCccC
Confidence 34666666532 123344 587 67999999988643 2367999998654
No 157
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=47.15 E-value=8 Score=40.26 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=25.1
Q ss_pred hCccceeEeeecCceeEecCCCccccccccc
Q 038377 887 FEIEPWTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 887 yGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
+-|..=++.=..||+++||||.||+.+|.-+
T Consensus 94 ~~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~ 124 (261)
T 1rc6_A 94 AKAEGKTFALSEGGYLYCPPGSLMTFVNAQA 124 (261)
T ss_dssp EEETTEEEEEETTEEEEECTTCCCEEEECSS
T ss_pred EEECCEEEEECCCCEEEECCCCCEEEEeCCC
Confidence 4445556667899999999999999999843
No 158
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=46.69 E-value=20 Score=35.30 Aligned_cols=49 Identities=27% Similarity=0.679 Sum_probs=36.2
Q ss_pred ccCCcccccccCCCceEecCCCCCcccchhhhhhhccC-cH-----HHHHhhCCCCC
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFD-TQ-----EDVKKACPVCR 269 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~-~~-----edi~~~CP~CR 269 (979)
+....|-.|... |.++-|.+|- +.||..||..=.+. .. .+=.|.||+|+
T Consensus 61 g~~d~C~vC~~G-G~LlcCD~Cp-r~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 61 GMDEQCRWCAEG-GNLICCDFCH-NAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp SCBCSCSSSCCC-SSEEECSSSC-CEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCeecccCCC-CcEEeCCCCC-CeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 445799999853 6799999999 55999999865543 11 23468899995
No 159
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=46.26 E-value=5.9 Score=45.56 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=26.1
Q ss_pred ecCceeEecCCCccccccccccchhhccccCCcc
Q 038377 897 HVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPEN 930 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 930 (979)
..||+|+||||.||-..|.-+--=+++-++++-|
T Consensus 132 ~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n 165 (459)
T 2e9q_A 132 REGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRN 165 (459)
T ss_dssp ETTEEEEECTTCCEEEEECSSSCEEEEEEEESSS
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCC
Confidence 5799999999999999999865445554545444
No 160
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=44.66 E-value=9 Score=37.20 Aligned_cols=49 Identities=27% Similarity=0.728 Sum_probs=36.6
Q ss_pred ccCCcccccccCCCceEecCCCCCcccchhhhhhhccCc-HHHH-----HhhCCCCC
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDT-QEDV-----KKACPVCR 269 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~-~edi-----~~~CP~CR 269 (979)
+....|..|.. .+.++-|.+|- +-||..||..=.+.- .++| .|.|++|+
T Consensus 55 g~~~~C~vC~d-GG~LlcCd~Cp-r~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 55 GMDEQCRWCAE-GGNLICCDFCH-NAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp SCBSSCTTTCC-CSEEEECSSSS-CEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCcCeecCC-CCeeEecCCCc-hhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 44568999984 27899999999 569999999765432 3333 49999994
No 161
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=44.64 E-value=10 Score=38.90 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=27.2
Q ss_pred eEeeecCceeEecCCCccccccccccchhhccccCCc
Q 038377 893 TFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPE 929 (979)
Q Consensus 893 TF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 929 (979)
++.=..||.|+||||.||...+-.+--=+|+.|-+++
T Consensus 128 ~i~v~~GDlIiIPaG~~H~f~~~~~~~~~airlF~~~ 164 (191)
T 1vr3_A 128 RISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGE 164 (191)
T ss_dssp EEEEETTEEEEECTTCCEEEEECTTCCEEEEEEESSS
T ss_pred EEEECCCCEEEECcCCcCCcccCCCCCEEEEEEECCC
Confidence 5677899999999999999877555333456555554
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=44.17 E-value=6.2 Score=40.65 Aligned_cols=45 Identities=11% Similarity=-0.001 Sum_probs=30.5
Q ss_pred CCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 221 RKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 221 ~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
-..|.-|..-- ..|+ +.|+ ..||-.||.+|...- ...||+|+...
T Consensus 208 ~~~c~i~~~~~~dPv~--~~~g-h~f~~~~i~~~~~~~----~~~cP~~~~~~ 253 (281)
T 2c2l_A 208 YLCGKISFELMREPCI--TPSG-ITYDRKDIEEHLQRV----GHFNPVTRSPL 253 (281)
T ss_dssp TTBCTTTCSBCSSEEE--CSSC-CEEETTHHHHHHHHT----CSSCTTTCCCC
T ss_pred ccCCcCcCCHhcCCeE--CCCC-CEECHHHHHHHHHHC----CCCCcCCCCCC
Confidence 34677777654 3343 4587 679999999998531 12399998655
No 163
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=43.56 E-value=8 Score=43.70 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=24.9
Q ss_pred CccceeEeeecCceeEecCCCcccccc
Q 038377 888 EIEPWTFEQHVGEAVIIPAGCPYQIRN 914 (979)
Q Consensus 888 GVEpWTF~Q~lGEAVFIPAGCPHQVRN 914 (979)
-|.+=+|.-..||+||||+|..|+++|
T Consensus 158 ~v~G~~~~~~~GD~i~~P~g~~H~~~N 184 (394)
T 3bu7_A 158 IVDGHKVELGANDFVLTPNGTWHEHGI 184 (394)
T ss_dssp EETTEEEEECTTCEEEECTTCCEEEEE
T ss_pred EECCEEEEEcCCCEEEECcCCCEEEEc
Confidence 566778999999999999999999999
No 164
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=43.23 E-value=10 Score=41.75 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=24.0
Q ss_pred ccceeEeeecCceeEecCCCccccccc
Q 038377 889 IEPWTFEQHVGEAVIIPAGCPYQIRNL 915 (979)
Q Consensus 889 VEpWTF~Q~lGEAVFIPAGCPHQVRNL 915 (979)
|.+-+|.=..||+++||+|++||++|.
T Consensus 303 v~~~~~~~~~GD~~~vP~~~~H~~~n~ 329 (354)
T 2d40_A 303 IGNETFSFSAKDIFVVPTWHGVSFQTT 329 (354)
T ss_dssp ETTEEEEEETTCEEEECTTCCEEEEEE
T ss_pred ECCEEEEEcCCCEEEECCCCeEEEEeC
Confidence 456778889999999999999999994
No 165
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.63 E-value=6.7 Score=38.95 Aligned_cols=35 Identities=29% Similarity=0.719 Sum_probs=30.3
Q ss_pred CccccCCCCcc---cccccccCccCcccchhhhHHHhh
Q 038377 349 NRLYCCSCKTS---IVDYHRSCASCSYTLCLSCCRDIL 383 (979)
Q Consensus 349 DERvCDnCkTS---IvD~HRSC~~CsyDLCL~CC~ELR 383 (979)
+++.|-+|..+ +++--+-|..|.+-.|-.|+..+|
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC
Confidence 57779999998 678899999999999999995544
No 166
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=41.92 E-value=9.5 Score=35.50 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=24.8
Q ss_pred HhCccceeEeeecCceeEecCCCcccccccc
Q 038377 886 EFEIEPWTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 886 EyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
.+-|..=++.=..||++|||+|.+|..++-.
T Consensus 50 ~~~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~ 80 (164)
T 2arc_A 50 VVKNQGREFVCRPGDILLFPPGEIHHYGRHP 80 (164)
T ss_dssp EEEETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred EEEECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence 3455566667789999999999999988753
No 167
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=41.44 E-value=8 Score=45.12 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=26.1
Q ss_pred ecCceeEecCCCccccccccccchhhccccCCcc
Q 038377 897 HVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPEN 930 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 930 (979)
..||+|+||||.||-..|.-+--=||+-++.+-|
T Consensus 131 ~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n 164 (510)
T 3c3v_A 131 NEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNN 164 (510)
T ss_dssp CTTEEEEECTTCEEEEEECSSSCEEEEEEECTTB
T ss_pred cCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCC
Confidence 5699999999999999999765445554455444
No 168
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=40.93 E-value=12 Score=41.45 Aligned_cols=43 Identities=28% Similarity=0.846 Sum_probs=32.3
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
....|.=|+-.-...|. ..|+-..||..|+..| ..||.||..-
T Consensus 294 ~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~---------~~CP~CR~~i 336 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSL---------RKCPICRGII 336 (345)
T ss_dssp TTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGC---------SBCTTTCCBC
T ss_pred CCCCCCccCCcCCceEE-cCCCChhHhHHHHhcC---------CcCCCCCCCc
Confidence 45789999976533332 3788555999999999 6899999753
No 169
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=39.30 E-value=15 Score=35.63 Aligned_cols=72 Identities=11% Similarity=0.287 Sum_probs=44.3
Q ss_pred HhhHhhhchhhhhhhHHHHHHhhCCCCCcccchhhhcccCccccCCCCccc-c--cccccCccCcccchhhhHHHhhc
Q 038377 310 LLPIVRQINQDQNVELEIEAKIKGQNPSEVQIQEAEFKYNRLYCCSCKTSI-V--DYHRSCASCSYTLCLSCCRDILQ 384 (979)
Q Consensus 310 LLP~Lkqi~~EQ~~E~EiEAkIqG~~~sei~i~~A~~~~DERvCDnCkTSI-v--D~HRSC~~CsyDLCL~CC~ELR~ 384 (979)
+|+||.+=.+.+..|.|.=.+++.. + .++.......+++.|-+|..+. | +--+-|..|.+..|-.|+-.+..
T Consensus 18 Il~Vl~Rd~~l~~~E~~ri~kL~~~-l--~~~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~ 92 (134)
T 1zbd_B 18 INRVIARAEKMETMEQERIGRLVDR-L--ETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN 92 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHH-H--HHHHHHhccCCCccccccCCCcccccCCCCCCCCCCcccccccCCccCC
Confidence 5666666555555554433333211 0 0112222345677799999887 3 56789999999999999876643
No 170
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=39.22 E-value=9.7 Score=31.64 Aligned_cols=47 Identities=23% Similarity=0.578 Sum_probs=32.1
Q ss_pred cCCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
...+|-=|..+. ..++.=..|+-..||..|+.+|... ...||+||..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----~~~CPiCR~~ 53 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-----GASCPICKKE 53 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-----TCBCTTTCCB
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-----CCcCCCcCch
Confidence 345898998765 3333334666445999999988632 2689999974
No 171
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=39.05 E-value=15 Score=31.54 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=35.1
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
....|.-|++. +.++.|-.|. +.|=+.|+.-....+.+ =.|.||.|..
T Consensus 11 ~~~~C~vC~~~-~~ll~Cd~C~-~~~H~~Cl~P~l~~~P~-g~W~C~~C~~ 58 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLRCTHCA-AAFHWRCHFPAGTSRPG-TGLRCRSCSG 58 (66)
T ss_dssp TTCCCTTTSCC-TTCEECSSSC-CEECHHHHCTTTCCCCS-SSCCCTTTTT
T ss_pred CCCCcCCCCCC-CeEEECCCCC-CceecccCCCccCcCCC-CCEECccccC
Confidence 34579999743 6799999999 55999999755544422 2499999975
No 172
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=38.96 E-value=9.2 Score=44.14 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=23.0
Q ss_pred EeeecCceeEecCCCccccccccccchhhc
Q 038377 894 FEQHVGEAVIIPAGCPYQIRNLKSCVNVVL 923 (979)
Q Consensus 894 F~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl 923 (979)
+.=..||+|+||||.||-..|.-+--=|++
T Consensus 115 ~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i 144 (476)
T 1fxz_A 115 YNFREGDLIAVPTGVAWWMYNNEDTPVVAV 144 (476)
T ss_dssp EEECTTEEEEECTTCEEEEEECSSSCEEEE
T ss_pred EEEeCCCEEEECCCCcEEEEeCCCCCEEEE
Confidence 334679999999999999999975433443
No 173
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=37.32 E-value=11 Score=37.67 Aligned_cols=47 Identities=21% Similarity=0.519 Sum_probs=34.3
Q ss_pred CcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 222 KRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 222 ~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
..|.-|++. +.++.|-.|. +.|-..|+..-..... +-.|.||.|+..
T Consensus 5 ~~C~~C~~~-g~ll~Cd~C~-~~~H~~C~~p~l~~~p-~~~W~C~~C~~~ 51 (184)
T 3o36_A 5 DWCAVCQNG-GELLCCEKCP-KVFHLSCHVPTLTNFP-SGEWICTFCRDL 51 (184)
T ss_dssp SSCTTTCCC-SSCEECSSSS-CEECTTTSSSCCSSCC-SSCCCCTTTSCS
T ss_pred CccccCCCC-CeeeecCCCC-cccCccccCCCCCCCC-CCCEECccccCc
Confidence 469999853 6799999999 5588888765444432 224999999853
No 174
>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}
Probab=36.58 E-value=12 Score=37.28 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=28.5
Q ss_pred ecCceeEecCCCcccccccc----ccchhh-----ccccCCc
Q 038377 897 HVGEAVIIPAGCPYQIRNLK----SCVNVV-----LDFISPE 929 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQVRNLk----SCIKVA-----lDFVSPE 929 (979)
..||.+++|+|-+|++.+.. -||-++ +-|+.|.
T Consensus 85 ~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~~~~~~ 126 (165)
T 3cjx_A 85 TAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNVNFTQD 126 (165)
T ss_dssp ETTEEEEECTTCEECEECCTTCSSCEEEEEEEESCEEEECTT
T ss_pred CCCeEEEeCCCCceeeEeCCCCCCCcEEEEEEeccceecCCC
Confidence 68999999999999999988 887777 6777764
No 175
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}
Probab=35.60 E-value=13 Score=37.81 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=33.2
Q ss_pred cccee-EeeecCceeEecCCCccccccccccchhhccccCCcchHH
Q 038377 889 IEPWT-FEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTE 933 (979)
Q Consensus 889 VEpWT-F~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 933 (979)
+.+|+ ++..+||.|.||.|.+|...|.... |.++=||+-|-++
T Consensus 115 ~~a~~~i~L~pGesvtIppg~~H~f~ageeg--vli~EvSt~~dDe 158 (175)
T 2y0o_A 115 YTVWHEIELEPGGQYTIPPNTKHWFQAGEEG--AVVTEMSSTSTDK 158 (175)
T ss_dssp CCCCEEEEECTTCEEEECTTCCEEEEEEEEE--EEEEEEEECCCGG
T ss_pred ecCCcEEEECCCCEEEECCCCcEEEEeCCCC--EEEEEEeCCCCCC
Confidence 44455 4899999999999999999996554 6677777766555
No 176
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=35.43 E-value=16 Score=32.37 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=29.2
Q ss_pred ccCCcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 219 RRRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 219 ~~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
.....|..|++.- .+--+|..|+ +.||..|.....+
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG-~v~C~~Cs~~~~~ 57 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCG-YVLCGDCSRHRAA 57 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTC-CEECTGGGCCEEE
T ss_pred CCCCCCcCcCCccccchhcccccCCC-cEEChHHhCCeEe
Confidence 4567899999966 4778999999 5699999988743
No 177
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.36 E-value=21 Score=31.25 Aligned_cols=50 Identities=20% Similarity=0.535 Sum_probs=36.1
Q ss_pred ccCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCc
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTC 272 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~C 272 (979)
..-..|.-|..--..-+.|..|+ ..|=..||.+|+-.-. ...||.||...
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~-h~fH~~Ci~kWl~~~~---~~~CP~Cr~~w 62 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCG-IRMHLPCVAKYFQSNA---EPRCPHCNDYW 62 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSC-CEECHHHHHHHSTTCS---SCCCTTTCSCC
T ss_pred CCCCcCcchhhHcccCCccCCCC-chhhHHHHHHHHHhcC---CCCCCCCcCcC
Confidence 45568988986543346899998 4588899999995422 26899998653
No 178
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=35.11 E-value=11 Score=35.43 Aligned_cols=40 Identities=30% Similarity=0.645 Sum_probs=27.3
Q ss_pred ccccccCC---CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 224 CHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 224 CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
|-.|...= +|++.|.- .||.+|+..|.-. =...||.|+..
T Consensus 4 C~~C~~Pi~iygRmIPCkH----vFCydCa~~~~~~----~~k~Cp~C~~~ 46 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKH----VFCYDCAILHEKK----GDKMCPGCSDP 46 (101)
T ss_dssp CTTTCSBCSEEEEEETTCC----EEEHHHHHHHHHT----TCCBCTTTCCB
T ss_pred cCccCCCeEEEeeeccccc----cHHHHHHHHHHhc----cCCCCcCcCCe
Confidence 45555532 68888864 8999999988432 12469998864
No 179
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=34.54 E-value=36 Score=34.15 Aligned_cols=47 Identities=23% Similarity=0.534 Sum_probs=36.5
Q ss_pred ccCCcccccccCCCceEecC--CCCCcccchhhhhhhccCc-HHHHHhhCCC
Q 038377 219 RRRKRCHWCRRRGQSLIKCS--SCRKLFFCVDCVKEWYFDT-QEDVKKACPV 267 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~--~C~rk~fC~~CI~~wYp~~-~edi~~~CP~ 267 (979)
|....|.+|... +.|+.|. +|-+ -||..||......- .++|...=|.
T Consensus 77 G~~~yC~wC~~G-g~l~~Cdn~~C~r-~FC~~CI~~nvG~~~~~~i~~~d~W 126 (159)
T 3a1b_A 77 GYQSYCTICCGG-REVLMCGNNNCCR-CFCVECVDLLVGPGAAQAAIKEDPW 126 (159)
T ss_dssp SSBSSCTTTSCC-SEEEECSSTTTCC-EEEHHHHHHHTCTTHHHHHHTSSSC
T ss_pred CCcceeeEecCC-CeEEeeCCCCCCC-chhHHHHHHhcCHhHHHHHhccCCC
Confidence 456799999953 6899999 7995 59999999999883 5666654443
No 180
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=33.85 E-value=12 Score=42.46 Aligned_cols=46 Identities=26% Similarity=0.367 Sum_probs=33.1
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCc----cceeEeeecCceeEecCCCccccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEI----EPWTFEQHVGEAVIIPAGCPYQIRNL 915 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGV----EpWTF~Q~lGEAVFIPAGCPHQVRNL 915 (979)
+||=.++.+|+-.-.= .+|| ...++.=..||+++||+|.+|-+.|.
T Consensus 65 Hh~~a~E~~yVl~G~g-----~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~ 114 (416)
T 1uij_A 65 HHADADFLLFVLSGRA-----ILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNP 114 (416)
T ss_dssp EEESEEEEEEEEESCE-----EEEEECSSCEEEEEECTTEEEEECTTCEEEEEEC
T ss_pred ccCCCceEEEEEeeEE-----EEEEEECCCCeEEEecCCCEEEECCCCeEEEEec
Confidence 4555566666654322 3444 45667778899999999999999999
No 181
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=33.68 E-value=16 Score=30.61 Aligned_cols=49 Identities=22% Similarity=0.645 Sum_probs=35.8
Q ss_pred ccCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.....|..|++ .+.++.|-.|.+ .|=..|+.--..... +-.|.||.|..
T Consensus 9 ~~~~~C~vC~~-~g~ll~CD~C~~-~fH~~Cl~p~l~~~p-~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQ-GGEIILCDTCPR-AYHMVCLDPDMEKAP-EGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSC-CSSEEECSSSSC-EEEHHHHCTTCCSCC-CSSCCCTTGGG
T ss_pred CCCCCCccCCC-CCcEEECCCCCh-hhhhhccCCCCCCCC-CCceECccccc
Confidence 34568999986 368999999997 688999875333332 23689999864
No 182
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.12 E-value=16 Score=33.39 Aligned_cols=44 Identities=23% Similarity=0.541 Sum_probs=30.6
Q ss_pred CcccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCC
Q 038377 222 KRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCR 269 (979)
Q Consensus 222 ~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CR 269 (979)
..| -|+..+ +.+|.|-.|++ .|=..|+.-=.....+ .+.||.|+
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~-w~H~~C~~~~~~~~p~--~w~C~~C~ 74 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSV-WQHIDCMGIDRQHIPD--TYLCERCQ 74 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCB-EEETTTTTCCTTSCCS--SBCCTTTS
T ss_pred EEe-ECCCccCCCcEEEcCCCCC-cCcCcCCCCCccCCCC--CEECCCCc
Confidence 468 588765 78999999985 5777787532222222 59999996
No 183
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=32.98 E-value=40 Score=34.32 Aligned_cols=49 Identities=20% Similarity=0.517 Sum_probs=35.5
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|..|++. +.++.|-.|. +.|-..|+..-.....+ -.|.||.|+..
T Consensus 6 ~~~~C~~C~~~-g~ll~Cd~C~-~~~H~~Cl~p~l~~~p~-~~W~C~~C~~~ 54 (207)
T 3u5n_A 6 NEDWCAVCQNG-GDLLCCEKCP-KVFHLTCHVPTLLSFPS-GDWICTFCRDI 54 (207)
T ss_dssp SCSSBTTTCCC-EEEEECSSSS-CEECTTTSSSCCSSCCS-SCCCCTTTSCS
T ss_pred CCCCCCCCCCC-CceEEcCCCC-CccCCccCCCCCCCCCC-CCEEeCceeCc
Confidence 34579999853 6799999999 55888998754444322 24999999864
No 184
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=31.52 E-value=16 Score=42.20 Aligned_cols=64 Identities=9% Similarity=0.011 Sum_probs=37.3
Q ss_pred CCCCcCcccccCHhhH-HHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCC
Q 038377 865 VHPILDQNFFLDATHK-MRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISP 928 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk-~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 928 (979)
.||-.++.+|+..-.- -.+-.+-|-+-.+..=..||.++||+|.||.+.|...-+.+..=|+||
T Consensus 355 ~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l~f~~s~ 419 (476)
T 1fxz_A 355 YNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTND 419 (476)
T ss_dssp EETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSS
T ss_pred ECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEEEEECCC
Confidence 6787777777655422 011111222223323578999999999999999954444433333355
No 185
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=30.54 E-value=22 Score=32.35 Aligned_cols=43 Identities=9% Similarity=-0.020 Sum_probs=29.9
Q ss_pred CCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 221 RKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 221 ~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
...|-=|+.-- --|+ ..|+ ..||-.||.+|... ...||+|+..
T Consensus 29 ~~~CpI~~~~m~dPV~--~~cG-htf~r~~I~~~l~~-----~~~cP~~~~~ 72 (100)
T 2kre_A 29 EFRDPLMDTLMTDPVR--LPSG-TIMDRSIILRHLLN-----SPTDPFNRQT 72 (100)
T ss_dssp TTBCTTTCSBCSSEEE--ETTT-EEEEHHHHHHHTTS-----CSBCSSSCCB
T ss_pred hhCCcCccCcccCCeE--CCCC-CEEchHHHHHHHHc-----CCCCCCCCCC
Confidence 45677776544 2333 2377 56999999999875 2689999864
No 186
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.44 E-value=7 Score=32.11 Aligned_cols=49 Identities=22% Similarity=0.605 Sum_probs=34.3
Q ss_pred ccCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
+....|.-|++. +.++.|-.|. +.|=..|+..-...+.+ -.|.||.|..
T Consensus 7 ~~~~~C~vC~~~-g~ll~Cd~C~-~~~H~~Cl~ppl~~~p~-g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS-GQLLMCDTCS-RVYHLDCLDPPLKTIPK-GMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS-SCCEECSSSS-CEECSSSSSSCCCSCCC-SSCCCHHHHC
T ss_pred CCCCCCccCCCC-CeEEEcCCCC-cceECccCCCCcCCCCC-CceEChhhhC
Confidence 455689999875 6799999999 55778888743333221 2688888854
No 187
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=30.36 E-value=15 Score=31.72 Aligned_cols=47 Identities=26% Similarity=0.646 Sum_probs=33.1
Q ss_pred cccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 223 RCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 223 ~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.|+.|++.+ +.++.|-.|.+ .|=+.|+..=...+.+...|.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~-~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDM-AFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCC-EEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCC-ceecccCCCCcCCCCCCCCcCCcCccC
Confidence 577888875 78999999995 477778763222232333789999974
No 188
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.29 E-value=21 Score=38.56 Aligned_cols=50 Identities=14% Similarity=0.357 Sum_probs=37.7
Q ss_pred ccCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCC--CCCCc
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPV--CRGTC 272 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~--CRg~C 272 (979)
....+|.-|..--..=|..+.|+ ..||-.||.+|.... -...||+ |+..+
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CG-HsFcR~cI~~~~~~~---~~~~CPvtGCr~~l 230 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCN-HVFDRDGIQNYLQGY---TTRDCPQAACSQVV 230 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSC-CEEEHHHHHHHSTTC---SCEECSGGGCSCEE
T ss_pred ceeeECcCccCcccCCeeeCCCC-CcccHHHHHHHHHhC---CCCCCCcccccCcC
Confidence 56779999998664445567898 679999999998642 1267999 98844
No 189
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.23 E-value=18 Score=33.64 Aligned_cols=46 Identities=26% Similarity=0.706 Sum_probs=33.5
Q ss_pred cccccccCC---CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 223 RCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 223 ~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.|+-|++.+ +.++.|..|.+. |=+.|+..-...+.+. .|.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~-yH~~Cl~p~l~~~P~~-~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRG-FHMECCDPPLTRMPKG-MWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCE-ECGGGCSSCCSSCCSS-CCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCe-eecccCCCCCCCCCCC-CeECCCCCC
Confidence 677787642 689999999954 7788886544444333 799999974
No 190
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.10 E-value=20 Score=28.53 Aligned_cols=46 Identities=33% Similarity=0.899 Sum_probs=32.1
Q ss_pred cccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 223 RCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 223 ~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.|.-|++.+ +.++.|-.|.+ .|=..|+..=...+.+ =.|.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~-~~H~~Cl~p~l~~~P~-g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNK-AFHLFCLRPALYEVPD-GEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCC-EECHHHHCTTCCSCCS-SCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCCh-hhCcccCCCCcCCCCC-CcEECcCccc
Confidence 488888865 68999999995 5777787532222222 2688999964
No 191
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=30.01 E-value=30 Score=38.81 Aligned_cols=35 Identities=34% Similarity=0.901 Sum_probs=29.1
Q ss_pred ccCCcccccccCCCceEecCCCCCcccch-hhhhh-h
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCV-DCVKE-W 253 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~-~CI~~-w 253 (979)
.....|+.|.+.....++|+.|..-+||. .|-+. |
T Consensus 45 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w 81 (429)
T 3qwp_A 45 SRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAW 81 (429)
T ss_dssp GBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTH
T ss_pred cCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhh
Confidence 45679999998665689999999999998 89764 5
No 192
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=29.43 E-value=14 Score=32.72 Aligned_cols=47 Identities=26% Similarity=0.646 Sum_probs=33.0
Q ss_pred cccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 223 RCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 223 ~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.|+-|++.+ +.++.|-.|.+ .|=+.|+.--...+.+.-.|.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~-~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDM-AFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCC-EEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCC-ccCcccCCCcccCCCCCCceECcCccc
Confidence 688888876 68999999996 477788773333333332389999974
No 193
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=29.37 E-value=44 Score=37.78 Aligned_cols=44 Identities=20% Similarity=0.548 Sum_probs=34.6
Q ss_pred ccCCcccccccCCCceEecC--CCCCcccchhhhhhhccCc-HHHHHhh
Q 038377 219 RRRKRCHWCRRRGQSLIKCS--SCRKLFFCVDCVKEWYFDT-QEDVKKA 264 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~--~C~rk~fC~~CI~~wYp~~-~edi~~~ 264 (979)
|....|.+|... +.++-|. +|. +-||..||+.....- .++|...
T Consensus 91 G~~~yCr~C~~G-g~l~~Cdn~~C~-r~FC~~Ci~~n~g~~~~~~i~~~ 137 (386)
T 2pv0_B 91 GYQSYCSICCSG-ETLLICGNPDCT-RCYCFECVDSLVGPGTSGKVHAM 137 (386)
T ss_dssp SSBCSCTTTCCC-SSCEECCSTTCC-CEECHHHHHHHTCTTHHHHHHHC
T ss_pred CCcccceEcCCC-CeEEEeCCCCCC-cchHHHHHHHhcChhHHHHhhcc
Confidence 556799999953 6899999 898 559999999999774 5555543
No 194
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=29.28 E-value=18 Score=30.21 Aligned_cols=26 Identities=35% Similarity=1.012 Sum_probs=20.5
Q ss_pred CceEecCCCCC-----cccchhhh---hhhccCc
Q 038377 232 QSLIKCSSCRK-----LFFCVDCV---KEWYFDT 257 (979)
Q Consensus 232 ~~vV~C~~C~r-----k~fC~~CI---~~wYp~~ 257 (979)
...-.|++|++ .+||..|- +.|||+.
T Consensus 9 eD~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~ 42 (53)
T 2cr8_A 9 EDEWQCTECKKFNSPSKRYCFRCWALRKDWYSDC 42 (53)
T ss_dssp SCCEECSSSCCEECSSCCBCTTTCCBCCCCCCCC
T ss_pred cceeecccccccCCCccchhHHHHHhhcccCCCc
Confidence 45668999984 58999996 5899984
No 195
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=28.87 E-value=32 Score=31.23 Aligned_cols=35 Identities=26% Similarity=0.588 Sum_probs=30.7
Q ss_pred ccCCcccccccCC--CceEecCCCCCcccchhhhhhh
Q 038377 219 RRRKRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEW 253 (979)
Q Consensus 219 ~~~~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~w 253 (979)
+....|+-|+..= ...|.|.+=.-.+||++|-+..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~s 49 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRES 49 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHH
Confidence 6778999999865 7899999999999999997654
No 196
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=28.71 E-value=23 Score=31.82 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=29.0
Q ss_pred ccCCcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 219 RRRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 219 ~~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
.....|..|++.- .+--+|..|+ +.||..|...+.+
T Consensus 18 ~~~~~C~~C~~~F~~~~RrhhCr~CG-~v~C~~Cs~~~~~ 56 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFTKRRHHCRACG-KVFCGVCCNRKCK 56 (90)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTC-CEECGGGSCEEEE
T ss_pred ccCCcCcCCCCcccchhhCccccCCC-CEECCcccCCeee
Confidence 3456899999865 4678999999 6699999988754
No 197
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.62 E-value=24 Score=32.29 Aligned_cols=48 Identities=25% Similarity=0.604 Sum_probs=32.9
Q ss_pred ccCCcccccccCC-CceEecCC--CCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 219 RRRKRCHWCRRRG-QSLIKCSS--CRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 219 ~~~~~CHQC~r~d-~~vV~C~~--C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.....| -|++.+ +.+|.|-+ |.+.-|=..|+. ..... .-.|.||.|+.
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p-~g~W~Cp~C~~ 84 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQ 84 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCC-CSSCCCTTTCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCC-CCCEECcCccC
Confidence 355688 899877 88999999 665556667765 22221 13588998864
No 198
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=28.46 E-value=19 Score=41.06 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=23.8
Q ss_pred ceeEeeecCceeEecCCCcccccccc-cc
Q 038377 891 PWTFEQHVGEAVIIPAGCPYQIRNLK-SC 918 (979)
Q Consensus 891 pWTF~Q~lGEAVFIPAGCPHQVRNLk-SC 918 (979)
..++.=..||+++||+|.+|.+.|.- ++
T Consensus 102 ~~~~~l~~GDv~~iP~G~~H~~~N~g~~e 130 (434)
T 2ea7_A 102 RDSYILEQGHAQKIPAGTTFFLVNPDDNE 130 (434)
T ss_dssp EEEEEEETTEEEEECTTCEEEEEECCSSC
T ss_pred CEEEEeCCCCEEEECCCccEEEEeCCCCC
Confidence 44677788999999999999999995 54
No 199
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.28 E-value=13 Score=36.72 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=33.0
Q ss_pred CCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCC
Q 038377 867 PILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGC 908 (979)
Q Consensus 867 PIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGC 908 (979)
|.|...-++.+.+-+.|+++|||..|.| +-||-|.|=+|=
T Consensus 22 p~h~Rrk~msa~LSkelr~ky~vr~~~I--kkGD~V~Vi~Gk 61 (145)
T 2zkr_t 22 PSHIRRKIMSSPLSKELRQKYNVRSMPI--RKDDEVQVVRGH 61 (145)
T ss_dssp CHHHHGGGGBC-CCHHHHHC-CC-CCBC--CTTCEEEECSST
T ss_pred cHHHHHHHHhcccChhHHhhcCcccccc--CCCCEEEEeecC
Confidence 8899989999988889999999998877 679999999984
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=28.05 E-value=36 Score=38.43 Aligned_cols=35 Identities=40% Similarity=1.100 Sum_probs=29.4
Q ss_pred ccCCcccccccCCCceEecCCCCCcccch-hhhhh-h
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCV-DCVKE-W 253 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~-~CI~~-w 253 (979)
.....|+.|.+.....++|+.|+.-+||. .|-+. |
T Consensus 47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w 83 (433)
T 3qww_A 47 ERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDW 83 (433)
T ss_dssp GTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHH
T ss_pred ccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhh
Confidence 45679999998766689999999999998 79754 6
No 201
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=27.82 E-value=32 Score=31.57 Aligned_cols=56 Identities=21% Similarity=0.559 Sum_probs=41.0
Q ss_pred cCCcccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCCcccccccCC
Q 038377 220 RRKRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGTCGCKACSSS 280 (979)
Q Consensus 220 ~~~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~CNCk~Clr~ 280 (979)
...+|.-|.... ..++.|..|.+. |=..|+......+ ..-.|.||.|. .|..|.+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~-~H~~Cl~~~~~~~-~~~~W~C~~C~---~C~~C~~~ 63 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQH-YHGMCLDIAVTPL-KRAGWQCPECK---VCQNCKQS 63 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCE-ECTTTTTCCCCTT-TSTTCCCTTTC---CCTTTCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCC-cChHHhCCccccc-cccCccCCcCC---cccccCcc
Confidence 456899998865 467999999965 8888888765443 23479999886 56777644
No 202
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=27.69 E-value=21 Score=29.08 Aligned_cols=25 Identities=28% Similarity=0.773 Sum_probs=19.4
Q ss_pred ceEecCCCCC-----cccchhhh---hhhccCc
Q 038377 233 SLIKCSSCRK-----LFFCVDCV---KEWYFDT 257 (979)
Q Consensus 233 ~vV~C~~C~r-----k~fC~~CI---~~wYp~~ 257 (979)
..-.|++|++ .+||..|- +.|||+.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~Wlp~~ 44 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALRENWLPED 44 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSSCSCCC
T ss_pred ceEecccccccCCCccchhhHHHhhccccCCcc
Confidence 4557999984 48999996 5799874
No 203
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=27.53 E-value=18 Score=34.63 Aligned_cols=27 Identities=7% Similarity=-0.342 Sum_probs=22.9
Q ss_pred eeEeeecCceeEecCCCccc-cccccccch
Q 038377 892 WTFEQHVGEAVIIPAGCPYQ-IRNLKSCVN 920 (979)
Q Consensus 892 WTF~Q~lGEAVFIPAGCPHQ-VRNLkSCIK 920 (979)
|++ ..||.+++|+|.+|+ +.+...|+=
T Consensus 86 ~~~--~~Gd~~~~p~g~~H~p~~~~e~~~~ 113 (145)
T 2o1q_A 86 DTA--IAPGYGYESANARHDKTEFPVASEF 113 (145)
T ss_dssp EEE--ESSEEEEECTTCEESCCEEEEEEEE
T ss_pred eEe--CCCEEEEECcCCccCCeECCCCeEE
Confidence 444 689999999999999 888888864
No 204
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=26.97 E-value=21 Score=41.65 Aligned_cols=64 Identities=6% Similarity=0.028 Sum_probs=37.4
Q ss_pred CCCCcCcccccCHhhH-HHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCC
Q 038377 865 VHPILDQNFFLDATHK-MRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISP 928 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk-~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSP 928 (979)
.||-.++.+|+..-.- -.+-.+-|-+-.+..=..||.++||+|.||-+.|...-+.+..=|+|+
T Consensus 389 ~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~viP~G~~H~~~Ng~e~l~~l~f~~s~ 453 (510)
T 3c3v_A 389 YNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDS 453 (510)
T ss_dssp EESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEESSS
T ss_pred ECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEEECCCCeEEEEeCCCCEEEEEEECCC
Confidence 6777777777655421 111111222223333578999999999999999954444443333344
No 205
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=26.93 E-value=19 Score=30.46 Aligned_cols=20 Identities=30% Similarity=0.705 Sum_probs=15.8
Q ss_pred CCCCCCccccc--------------cCCCccccc
Q 038377 5 EDLPDHLRCKR--------------TDGKQWRCN 24 (979)
Q Consensus 5 ~~~~~~~rc~r--------------tdgk~wrc~ 24 (979)
.+.-+|.||+| .+||+|+|.
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~ 37 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACN 37 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECS
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcc
Confidence 35668899998 258999995
No 206
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=26.68 E-value=13 Score=39.31 Aligned_cols=47 Identities=26% Similarity=0.646 Sum_probs=30.3
Q ss_pred cccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 223 RCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 223 ~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.|..|++.+ +.++.|-.|.+ .|=+.|+..=...+.+...|.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~-~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDM-AFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCC-EECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCc-ceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 689999876 68999999996 466677763222222333688999964
No 207
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=26.13 E-value=25 Score=40.25 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.3
Q ss_pred eeEeeecCceeEecCCCcccccccc
Q 038377 892 WTFEQHVGEAVIIPAGCPYQIRNLK 916 (979)
Q Consensus 892 WTF~Q~lGEAVFIPAGCPHQVRNLk 916 (979)
.++.=..||.++||+|.+|.+.|.-
T Consensus 128 ~~~~l~~GDv~~~P~G~~H~~~N~g 152 (445)
T 2cav_A 128 DTYKLDQGDAIKIQAGTPFYLINPD 152 (445)
T ss_dssp EEEEEETTEEEEECTTCCEEEEECC
T ss_pred EEEEecCCCEEEECCCCcEEEEECC
Confidence 4666788999999999999999996
No 208
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.00 E-value=30 Score=30.46 Aligned_cols=36 Identities=19% Similarity=0.556 Sum_probs=29.1
Q ss_pred ccCCcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 219 RRRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 219 ~~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
.....|..|++.- .+--+|..|+ +.||..|.....|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG-~v~C~~Cs~~~~~ 55 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCG-HIFCNTCSSNELA 55 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTC-CEECSGGGCEEEC
T ss_pred ccCCcccCcCCcccCccccccCCCCC-CEEChHHhCCeee
Confidence 3456899999866 4678999999 5699999988754
No 209
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=25.84 E-value=22 Score=31.20 Aligned_cols=43 Identities=7% Similarity=-0.051 Sum_probs=29.3
Q ss_pred CCcccccccCC-CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 221 RKRCHWCRRRG-QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 221 ~~~CHQC~r~d-~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
...|-=|+.-- --|+ ..|+ ..||-.||.+|... ...||+|+..
T Consensus 14 ~~~CpI~~~~m~dPV~--~~cG-htf~r~~I~~~l~~-----~~~cP~~~~~ 57 (85)
T 2kr4_A 14 EFRDPLMDTLMTDPVR--LPSG-TVMDRSIILRHLLN-----SPTDPFNRQM 57 (85)
T ss_dssp TTBCTTTCSBCSSEEE--CTTS-CEEEHHHHHHHHHH-----CSBCTTTCCB
T ss_pred heECcccCchhcCCeE--CCCC-CEECHHHHHHHHhc-----CCCCCCCcCC
Confidence 45666666543 2233 3477 56999999999853 3689999854
No 210
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=25.60 E-value=27 Score=31.48 Aligned_cols=30 Identities=23% Similarity=0.714 Sum_probs=27.4
Q ss_pred cc-cCCCCcccccccccCccCcccchhhhHH
Q 038377 351 LY-CCSCKTSIVDYHRSCASCSYTLCLSCCR 380 (979)
Q Consensus 351 Rv-CDnCkTSIvD~HRSC~~CsyDLCL~CC~ 380 (979)
.. ||.|...+..+--.|..|.|+|=+.|-.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcC
Confidence 35 9999999999999999999999999975
No 211
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=25.19 E-value=27 Score=38.12 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=33.1
Q ss_pred CCCCcCcccccCHhhHHHHHHHhCc---cc--eeEeeecCceeEecCCCccccccccc
Q 038377 865 VHPILDQNFFLDATHKMRLKEEFEI---EP--WTFEQHVGEAVIIPAGCPYQIRNLKS 917 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk~kLkEEyGV---Ep--WTF~Q~lGEAVFIPAGCPHQVRNLkS 917 (979)
.|| .++-+|+..-.- ++.| .+ .++.=..||.++||+|.+|.++|...
T Consensus 96 ~H~-~~E~~~Vl~G~~-----~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~ 147 (385)
T 1j58_A 96 WHK-EAEWAYMIYGSA-----RVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEE 147 (385)
T ss_dssp EES-SCEEEEEEEEEE-----EEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEE
T ss_pred cCC-hheEEEEEeeeE-----EEEEEeCCCcEEEEEeCCCCEEEECCCCeEEEEECCC
Confidence 566 667777644322 3444 22 25577899999999999999999865
No 212
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=25.07 E-value=15 Score=40.64 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=0.0
Q ss_pred cCCcccccccCC---CceEecCCCCCcccchhhhhhhccCc--HHHHHhhCCCC
Q 038377 220 RRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYFDT--QEDVKKACPVC 268 (979)
Q Consensus 220 ~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp~~--~edi~~~CP~C 268 (979)
....|..|+..- .+--+|..|+ +.||..|-..++|-- .......|-.|
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg-~~~C~~Cs~~~~~~~~~~~~~~rvC~~C 426 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACG-KIVCRNCSRNKYPLKYLKDRMAKVCDGC 426 (434)
T ss_dssp ------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCc-CEeehhhCCCeeeCCCCCCCcCEecHHH
Confidence 456899999855 3678999999 569999999988752 22334444444
No 213
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=25.04 E-value=28 Score=31.35 Aligned_cols=35 Identities=23% Similarity=0.506 Sum_probs=28.0
Q ss_pred cCCcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 220 RRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 220 ~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
....|..|++.- .+--+|..|+ +.||..|...+.+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~~~~ 45 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCG-RAFCNGCLSFSAL 45 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSC-CEEETTTSCEEEE
T ss_pred cCCCCcCcCCcccCccccccCCCCC-CEEChhHcCCcee
Confidence 445899999965 4778999999 5599999887644
No 214
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.74 E-value=38 Score=30.85 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=28.9
Q ss_pred Cccc-cCCCCcccccccccCc------cCcccchhhhHHHhhcCCCCc
Q 038377 349 NRLY-CCSCKTSIVDYHRSCA------SCSYTLCLSCCRDILQGSLSG 389 (979)
Q Consensus 349 DERv-CDnCkTSIvD~HRSC~------~CsyDLCL~CC~ELR~G~~~g 389 (979)
++-| ||+|.=+|-=||-+|- . .--+|-.||+++.+....+
T Consensus 37 g~MI~CD~c~C~~eWfH~~CVgl~~~p~-~~W~Cp~cC~~~~k~~~k~ 83 (90)
T 2jmi_A 37 GPMVACDNPACPFEWFHYGCVGLKQAPK-GKWYCSKDCKEIANQRSKS 83 (90)
T ss_dssp SSEECCCSSSCSCSCEETTTSSCSSCTT-SCCCSSHHHHHHHHHSSCC
T ss_pred CCEEEecCCCCccccCcCccCCCCcCCC-CCccCChhhcchhhccccc
Confidence 3445 9998766666999994 3 4578999888887654443
No 215
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.62 E-value=32 Score=32.77 Aligned_cols=36 Identities=19% Similarity=0.532 Sum_probs=28.8
Q ss_pred ccCCcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 219 RRRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 219 ~~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
.....|..|++.- .+--+|..|+ +.||..|.....+
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG-~vfC~~Cs~~~~~ 105 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCG-NIFCAECSAKNAL 105 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTC-CEECGGGSCEEEC
T ss_pred CCCCCCcCcCCccccccccccCCCCC-eEEChHHhCCccc
Confidence 3456899999965 4678999999 5699999988754
No 216
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=24.26 E-value=21 Score=31.51 Aligned_cols=50 Identities=22% Similarity=0.586 Sum_probs=33.1
Q ss_pred CCcccccccCC--CceEecCCCCCcccchhhhhhhccCc-HHH--HHhhCCC--CCCC
Q 038377 221 RKRCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDT-QED--VKKACPV--CRGT 271 (979)
Q Consensus 221 ~~~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~-~ed--i~~~CP~--CRg~ 271 (979)
..+|-=|.-.- ..++.-..|+ ..||.+|+.++.-.. .+. ....||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~Cg-H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQ-CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTT-EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCC-CcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34677777543 3345555687 779999999987663 332 2468998 7643
No 217
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=24.21 E-value=17 Score=42.20 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=44.6
Q ss_pred CCCCcCcccccCHhhH-HHHHHHhCccceeEeeecCceeEecCCCccccccccccchhhccccCCcchHHHHHHHHHhhc
Q 038377 865 VHPILDQNFFLDATHK-MRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPENVTECIQLIDEIRL 943 (979)
Q Consensus 865 ~hPIHDQ~fYLt~ehk-~kLkEEyGVEpWTF~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~ 943 (979)
.||=.++.+|+..-.- -.+-.+.|-+-.+..=..||.++||+|.||...|...-..+..=|.|+..-..- |+.=|+.
T Consensus 384 ~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~vvP~G~~H~~~n~~e~~~~l~~~ts~~p~~~~--l~s~~~~ 461 (493)
T 2d5f_A 384 WNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSY--IKDVFRA 461 (493)
T ss_dssp EESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSTTCCEEE--HHHHHHH
T ss_pred ECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEEECCCCeEeeeeCCCCEEEEEEECCCCCccee--HHHHHHh
Confidence 5776677777654321 111111122222233578999999999999999975444433323233221111 2666777
Q ss_pred CCcc
Q 038377 944 LPTD 947 (979)
Q Consensus 944 Lp~~ 947 (979)
+|.+
T Consensus 462 ~p~e 465 (493)
T 2d5f_A 462 IPSE 465 (493)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 7744
No 218
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.18 E-value=36 Score=30.09 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=28.9
Q ss_pred ccCCcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 219 RRRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 219 ~~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
.....|..|++.- .+--+|..|+ +.||..|.....+
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG-~vfC~~Cs~~~~~ 50 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCG-NSFCSRCCSFKVP 50 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSC-CEECTTTSCEEEC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCC-cEEChhhcCCcee
Confidence 4566899999965 4678999999 5699999887654
No 219
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=24.05 E-value=40 Score=29.20 Aligned_cols=48 Identities=25% Similarity=0.604 Sum_probs=33.2
Q ss_pred ccCCcccccccCC-CceEecCC--CCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 219 RRRKRCHWCRRRG-QSLIKCSS--CRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 219 ~~~~~CHQC~r~d-~~vV~C~~--C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.....| -|++.+ +.+|.|-+ |.+.-|=..|+. ..... .-.|.||.|+.
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p-~g~w~Cp~C~~ 64 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQ 64 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCC-SSCCCCTTTSS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCC-CCCEECCCCCc
Confidence 456789 599977 88999999 766667667775 22221 13588998854
No 220
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.99 E-value=20 Score=31.56 Aligned_cols=47 Identities=19% Similarity=0.531 Sum_probs=30.7
Q ss_pred cccccccCC--CceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 223 RCHWCRRRG--QSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 223 ~CHQC~r~d--~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
.|..|++.+ +.++.|-.|.+ .|=+.|+..=...+.+...|.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~-~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNV-AYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCC-EEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCc-cccccccCCCccCCCCCCCcCCcCccC
Confidence 567788765 68999999995 466677753222222223688999964
No 221
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.87 E-value=29 Score=30.79 Aligned_cols=36 Identities=22% Similarity=0.760 Sum_probs=26.1
Q ss_pred hcccCccc--cCCCCcccc----cccccCccCcccchhhhHH
Q 038377 345 EFKYNRLY--CCSCKTSIV----DYHRSCASCSYTLCLSCCR 380 (979)
Q Consensus 345 ~~~~DERv--CDnCkTSIv----D~HRSC~~CsyDLCL~CC~ 380 (979)
.+..+.++ |-+|.+.|. .....||.|.+..|..|-.
T Consensus 18 ~v~~~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 18 VLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCCSCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred HHhcCCCEeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 34344444 999999764 3446899999999999953
No 222
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.69 E-value=25 Score=36.11 Aligned_cols=33 Identities=27% Similarity=0.661 Sum_probs=27.4
Q ss_pred CcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 222 KRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 222 ~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
..|+.|++.- .+--+|..|+ +.||..|...+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG-~v~C~~Cs~~~~~ 197 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCG-QVFCGQCTAKQCP 197 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTC-CEECSTTSCEEEE
T ss_pred CccCCCCCccCCcccccccCCcC-CEEChHHhCCeee
Confidence 5899999865 4778999999 5599999988754
No 223
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=23.48 E-value=15 Score=35.60 Aligned_cols=40 Identities=18% Similarity=0.387 Sum_probs=36.1
Q ss_pred CCcCcccccCHhhHHHHHHHhCccceeEeeecCceeEecCCC
Q 038377 867 PILDQNFFLDATHKMRLKEEFEIEPWTFEQHVGEAVIIPAGC 908 (979)
Q Consensus 867 PIHDQ~fYLt~ehk~kLkEEyGVEpWTF~Q~lGEAVFIPAGC 908 (979)
|.|...-++.+.+=+.|.++|||..+.| +-||-|.|=||=
T Consensus 23 p~h~r~k~msa~LSkeLr~ky~vrs~~I--kkgD~V~Vi~Gk 62 (127)
T 3u5e_Y 23 PSSQRRVLLSAPLSKELRAQYGIKALPI--RRDDEVLVVRGS 62 (127)
T ss_dssp CHHHHHHHTEEEBCHHHHHHHTCCEEEC--CTTCEEEECSST
T ss_pred CcchhhhheeCcCCHHHHHHhCcCcccc--cCCCEEEEeecC
Confidence 8888888999999999999999999988 679999999983
No 224
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=22.52 E-value=49 Score=37.95 Aligned_cols=35 Identities=31% Similarity=0.840 Sum_probs=29.0
Q ss_pred ccCCcccccccCCCceEecCCCCCcccch-hhhh-hh
Q 038377 219 RRRKRCHWCRRRGQSLIKCSSCRKLFFCV-DCVK-EW 253 (979)
Q Consensus 219 ~~~~~CHQC~r~d~~vV~C~~C~rk~fC~-~CI~-~w 253 (979)
.....|+.|.+.....++|+.|+.-+||. .|-+ .|
T Consensus 47 ~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w 83 (490)
T 3n71_A 47 LINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAW 83 (490)
T ss_dssp GTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHH
T ss_pred ccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhh
Confidence 45679999988656689999999999997 8975 46
No 225
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=21.67 E-value=24 Score=33.09 Aligned_cols=14 Identities=29% Similarity=1.127 Sum_probs=12.3
Q ss_pred ccchhhhhhhccCc
Q 038377 244 FFCVDCVKEWYFDT 257 (979)
Q Consensus 244 ~fC~~CI~~wYp~~ 257 (979)
.||-.|+.+||-+-
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999863
No 226
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.62 E-value=31 Score=30.27 Aligned_cols=47 Identities=23% Similarity=0.718 Sum_probs=30.4
Q ss_pred cCCcccccccCC---CceEecCCCC----CcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRG---QSLIKCSSCR----KLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d---~~vV~C~~C~----rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|-=|.-.. ..++ .-|+ .+.|...||.+|.-.. -...||+||..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~--~pC~C~Gs~h~fH~~Cl~~Wl~~~---~~~~CplCr~~ 67 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLI--TPCHCTGSLHFVHQACLQQWIKSS---DTRCCELCKYE 67 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEE--CSSSCCSSSCCEETTHHHHHHHHH---CCSBCSSSCCB
T ss_pred CCCCCeEcCccccCCCeeE--eccccCCcCCeeCHHHHHHHHhhC---CCCCCCCCCCe
Confidence 345777776422 3343 3454 4789999999997431 12489999865
No 227
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.59 E-value=29 Score=36.01 Aligned_cols=33 Identities=27% Similarity=0.746 Sum_probs=27.0
Q ss_pred CcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 222 KRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 222 ~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
.+|..|++.- .|--+|.+|+ +.||..|-..+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG-~v~C~~Cs~~~~~ 200 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACG-QIFCGKCSSKYST 200 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC-CEECTTTCCEEEE
T ss_pred CCCcCcCCCCCccccccccCCCc-CEeChhhcCCccc
Confidence 4899999865 4678999999 6699999987744
No 228
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=21.51 E-value=24 Score=33.10 Aligned_cols=14 Identities=36% Similarity=1.186 Sum_probs=12.3
Q ss_pred ccchhhhhhhccCc
Q 038377 244 FFCVDCVKEWYFDT 257 (979)
Q Consensus 244 ~fC~~CI~~wYp~~ 257 (979)
.||-.|+.+||-+-
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999873
No 229
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.51 E-value=35 Score=32.67 Aligned_cols=36 Identities=19% Similarity=0.444 Sum_probs=25.9
Q ss_pred ccCCcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 219 RRRKRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 219 ~~~~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
.....|..|+..= .+--+|.+|+ +.||..|..+..|
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG-~ifC~~Cs~~~~~ 55 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCK-KNFCMTCSSQVGN 55 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTC-CEECGGGEEC---
T ss_pred cccCcccCcCCccccccccccCCCCC-CeeCHHHhCCCCC
Confidence 3446899999855 4678999999 5699999998876
No 230
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=21.49 E-value=24 Score=29.47 Aligned_cols=48 Identities=21% Similarity=0.612 Sum_probs=33.8
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRG 270 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg 270 (979)
....|..|++ .+.++.|-.|.+. |=..|+..-...+. +-.|.||.|+.
T Consensus 8 ~~~~C~vC~~-~g~ll~Cd~C~~~-fH~~Cl~ppl~~~p-~g~W~C~~C~~ 55 (61)
T 1mm2_A 8 HMEFCRVCKD-GGELLCCDTCPSS-YHIHCLNPPLPEIP-NGEWLCPRCTC 55 (61)
T ss_dssp SCSSCTTTCC-CSSCBCCSSSCCC-BCSSSSSSCCSSCC-SSCCCCTTTTT
T ss_pred CCCcCCCCCC-CCCEEEcCCCCHH-HcccccCCCcCcCC-CCccCChhhcC
Confidence 3457999985 3689999999964 88888874333332 23688999863
No 231
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.01 E-value=70 Score=26.91 Aligned_cols=42 Identities=31% Similarity=0.694 Sum_probs=29.7
Q ss_pred cCCcccccccCCCceEecCCCCCcccchhhhhhhccCcHHHHHhhCCCCCCC
Q 038377 220 RRKRCHWCRRRGQSLIKCSSCRKLFFCVDCVKEWYFDTQEDVKKACPVCRGT 271 (979)
Q Consensus 220 ~~~~CHQC~r~d~~vV~C~~C~rk~fC~~CI~~wYp~~~edi~~~CP~CRg~ 271 (979)
....|--|+.+...+ .-.-|+-..||..|+.+ ...||+||..
T Consensus 14 ~~~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~~---------~~~CP~CR~~ 55 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNW-VLLPCRHTCLCDGCVKY---------FQQCPMCRQF 55 (68)
T ss_dssp CSSCCSSSSSSCCCC-EETTTTBCCSCTTHHHH---------CSSCTTTCCC
T ss_pred CCCCCCCcCcCCCCE-EEECCCChhhhHHHHhc---------CCCCCCCCcc
Confidence 456899998766332 23456645599999984 2789999974
No 232
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=20.72 E-value=30 Score=40.02 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=25.1
Q ss_pred ecCceeEecCCCccccccccccchhhccccCCcc
Q 038377 897 HVGEAVIIPAGCPYQIRNLKSCVNVVLDFISPEN 930 (979)
Q Consensus 897 ~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEn 930 (979)
+.||+|.||||.||=.-|.-.-==+++-++.|=|
T Consensus 150 ~~GDvi~iPaG~~~~~~N~g~e~L~~l~~~d~~n 183 (466)
T 3kgl_A 150 RTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLAS 183 (466)
T ss_dssp ETTEEEEECTTCEEEEECCSSSCEEEEEEEESSS
T ss_pred cCCCEEEECCCCcEEEEeCCCCcEEEEEEEcCCC
Confidence 5699999999999999998644334455555544
No 233
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.59 E-value=37 Score=29.26 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=26.6
Q ss_pred CcccccccCC---CceEecCCCCCcccchhhhhhhcc
Q 038377 222 KRCHWCRRRG---QSLIKCSSCRKLFFCVDCVKEWYF 255 (979)
Q Consensus 222 ~~CHQC~r~d---~~vV~C~~C~rk~fC~~CI~~wYp 255 (979)
..|..|++.- .+--+|..|+ +.||..|.....+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG-~v~C~~Cs~~~~~ 47 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCG-GVFCQEHSSNSIP 47 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTC-CEECGGGSCEEEE
T ss_pred CcccCCCCccCCccccccCCCCC-EEEcccccCCeEE
Confidence 4799999865 4678999999 5699999876643
Done!