BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038379
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P46301|RS25_SOLLC 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3
SV=1
Length = 108
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 51/93 (54%), Gaps = 24/93 (25%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
MVLFD+ TYDK E K KL S + + ISGS
Sbjct: 40 MVLFDKSTYDKLL-----------------SEAPK--YKLITPSV-----LSDRLRISGS 75
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTRVINT 93
LA +AI+DL+ARGSIRM+SA+ASQQIYTR NT
Sbjct: 76 LARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108
>sp|Q9SIK2|RS252_ARATH 40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2
SV=1
Length = 108
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 51/93 (54%), Gaps = 24/93 (25%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
MVLFDQGTYDK E K KL S + + I+GS
Sbjct: 40 MVLFDQGTYDKLL-----------------TEAPKF--KLITPSI-----LSDRMRINGS 75
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTRVINT 93
LA RAI++L+A+G IRM+SA++SQQIYTR NT
Sbjct: 76 LARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108
>sp|Q9T029|RS254_ARATH 40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2
SV=1
Length = 108
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 50/93 (53%), Gaps = 24/93 (25%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
MVLFDQ TYDK E K KL S + + I+GS
Sbjct: 40 MVLFDQATYDKLL-----------------TEAPKF--KLITPSI-----LSDRMRINGS 75
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTRVINT 93
LA RAI++L+A+G IRM++A++SQQIYTR NT
Sbjct: 76 LARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108
>sp|Q8GYL5|RS253_ARATH 40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3
SV=2
Length = 108
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 50/90 (55%), Gaps = 24/90 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
MVLFDQ TYDK L+ K KL S + + I+GS
Sbjct: 40 MVLFDQATYDK----------LLSEAPKF---------KLITPSI-----LSDRLRINGS 75
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTRV 90
LA RAI++L+A+G+IRM+SA++SQQIYTR
Sbjct: 76 LARRAIRELMAKGTIRMVSAHSSQQIYTRA 105
>sp|Q9SIW5|RS251_ARATH 40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3
SV=3
Length = 109
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 24/89 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
MVLFDQ TYDK + E K KL S ++ + I+GS
Sbjct: 40 MVLFDQATYDK-----------------LMSEAPKF--KLITPSILSDR-----LRINGS 75
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTR 89
LA +AI+DL+ +G+IRM+S ++SQQI TR
Sbjct: 76 LARKAIRDLMVKGTIRMVSTHSSQQINTR 104
>sp|Q94G66|RS25_AMACR 40S ribosomal protein S25 OS=Amaranthus cruentus GN=RPS25 PE=3 SV=1
Length = 114
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 24/92 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
+VLFD T+DK L+ GK K+ +T +E I+GS
Sbjct: 39 LVLFDNATFDK----------LLSEAGKQ---------KVVTAATLSE-----RFRINGS 74
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTRVIN 92
LA RAI++LV+RG+I+M+ ++S QIYTR N
Sbjct: 75 LARRAIRELVSRGAIKMVCHHSSLQIYTRSTN 106
>sp|Q8ISN9|RS25_BRABE 40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2
SV=1
Length = 123
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 24/89 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
+VLFD+ TYDK + + + S VS+ + I GS
Sbjct: 43 LVLFDKATYDKLYKEVPSYKLITPSV--VSER----------------------LKIRGS 78
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTR 89
LA A+K+L ++G I+++S +++Q IYTR
Sbjct: 79 LARAALKELHSKGMIKLVSKHSAQVIYTR 107
>sp|Q6Q311|RS25_SHEEP 40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1
Length = 125
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 24/89 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
+VLFD+ TYDK C +V KL + +E + I GS
Sbjct: 47 LVLFDKATYDKL-------------CKEVPN------YKLITPAVVSER-----LKIRGS 82
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTR 89
LA A+++L+++G I+++S + +Q IYTR
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTR 111
>sp|P62853|RS25_RAT 40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1
Length = 125
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 24/89 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
+VLFD+ TYDK C +V KL + +E + I GS
Sbjct: 47 LVLFDKATYDKL-------------CKEVPN------YKLITPAVVSER-----LKIRGS 82
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTR 89
LA A+++L+++G I+++S + +Q IYTR
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTR 111
>sp|P62852|RS25_MOUSE 40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1
Length = 125
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 24/89 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
+VLFD+ TYDK C +V KL + +E + I GS
Sbjct: 47 LVLFDKATYDKL-------------CKEVPN------YKLITPAVVSER-----LKIRGS 82
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTR 89
LA A+++L+++G I+++S + +Q IYTR
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTR 111
>sp|P62851|RS25_HUMAN 40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1
Length = 125
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 24/89 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
+VLFD+ TYDK C +V KL + +E + I GS
Sbjct: 47 LVLFDKATYDKL-------------CKEVPN------YKLITPAVVSER-----LKIRGS 82
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTR 89
LA A+++L+++G I+++S + +Q IYTR
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTR 111
>sp|Q56JX5|RS25_BOVIN 40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1
Length = 125
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 24/89 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
+VLFD+ TYDK C +V KL + +E + I GS
Sbjct: 47 LVLFDKATYDKL-------------CKEVPN------YKLITPAVVSER-----LKIRGS 82
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTR 89
LA A+++L+++G I+++S + +Q IYTR
Sbjct: 83 LARAALQELLSKGLIKLVSKHRAQVIYTR 111
>sp|Q6PBI5|RS25_DANRE 40S ribosomal protein S25 OS=Danio rerio GN=rps25 PE=2 SV=1
Length = 124
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 24/89 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
+VLFD+ TYDK + + + + VS+ + I GS
Sbjct: 46 LVLFDKATYDKLYKEVPNYKLITPAV--VSER----------------------LKIRGS 81
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTR 89
LA A+++L+ +G I+++S + +Q IYTR
Sbjct: 82 LARAALQELLGKGLIKLVSKHRAQVIYTR 110
>sp|P79009|RS25A_SCHPO 40S ribosomal protein S25-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps25a PE=3 SV=2
Length = 89
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 57 ISGSLASRAIKDLVARGSIRMISAYASQQIYTRV 90
I+GSLA AI+DL RG I+ + ++ Q IYTRV
Sbjct: 51 INGSLARIAIRDLAERGVIQKVDQHSKQAIYTRV 84
>sp|Q7SC06|RS25_NEUCR 40S ribosomal protein S25 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rps-25 PE=3 SV=1
Length = 97
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 55 VHISGSLASRAIKDLVARGSIRMISAYASQQIYTRVI 91
+ I+GSLA R +KDL +G I+ + ++ +IYTR I
Sbjct: 57 LKINGSLARRCLKDLEEKGQIKQVVGHSKMKIYTRAI 93
>sp|O74172|RS25B_SCHPO 40S ribosomal protein S25-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps25b PE=3 SV=1
Length = 88
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 57 ISGSLASRAIKDLVARGSIRMISAYASQQIYTR 89
I+GSLA AI+DL RG I+ + ++ Q IYTR
Sbjct: 51 INGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83
>sp|P52821|RS25_CAEEL 40S ribosomal protein S25 OS=Caenorhabditis elegans GN=rps-25 PE=3
SV=1
Length = 117
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 24/89 (26%)
Query: 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGS 60
MVLFDQ TYDK + +E + KL S +E + + S
Sbjct: 43 MVLFDQATYDKLY---KEVITY----------------KLITPSVVSER-----LKVRAS 78
Query: 61 LASRAIKDLVARGSIRMISAYASQQIYTR 89
LA +K+L A+G ++ + + Q +YTR
Sbjct: 79 LAKAGLKELQAKGLVKCVVHHHGQVVYTR 107
>sp|P48588|RS25_DROME 40S ribosomal protein S25 OS=Drosophila melanogaster GN=RpS25 PE=1
SV=3
Length = 117
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 24/88 (27%)
Query: 2 VLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSL 61
VLFD+ TY+K + + KL S +E + I GSL
Sbjct: 47 VLFDKATYEKLYKEV-------------------PAYKLITPSVVSER-----LKIRGSL 82
Query: 62 ASRAIKDLVARGSIRMISAYASQQIYTR 89
A RA+ +L +G I+ + + SQ IYTR
Sbjct: 83 AKRALIELREKGLIKQVVQHHSQVIYTR 110
>sp|Q962Q5|RS25_SPOFR 40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3
SV=1
Length = 119
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 24/88 (27%)
Query: 2 VLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSL 61
VLFD+ TY+K + +V Q KL + +E + + GSL
Sbjct: 47 VLFDKPTYEKLY-------------KEVPQ------YKLITPAVVSER-----LKVRGSL 82
Query: 62 ASRAIKDLVARGSIRMISAYASQQIYTR 89
A RA+ +L +G I+ + + Q IYTR
Sbjct: 83 ARRALIELREKGLIKQVVQHHGQVIYTR 110
>sp|Q3E792|RS25A_YEAST 40S ribosomal protein S25-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS25A PE=1 SV=1
Length = 108
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 57 ISGSLASRAIKDLVARGSIRMISAYASQQIYTR 89
I GSLA A++ L G I+ IS ++ Q IYTR
Sbjct: 71 IGGSLARIALRHLEKEGIIKPISKHSKQAIYTR 103
>sp|P0C0T4|RS25B_YEAST 40S ribosomal protein S25-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS25B PE=1 SV=1
Length = 108
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 57 ISGSLASRAIKDLVARGSIRMISAYASQQIYTR 89
I GSLA A++ L G I+ IS ++ Q IYTR
Sbjct: 71 IGGSLARIALRHLEKEGIIKPISKHSKQAIYTR 103
>sp|Q75DJ1|RS25_ASHGO 40S ribosomal protein S25 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPS25 PE=3 SV=1
Length = 108
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 57 ISGSLASRAIKDLVARGSIRMISAYASQQIYTR 89
I GS+A A++ L G I+ IS ++ Q IYTR
Sbjct: 71 IGGSMARVALRHLETEGIIKPISKHSKQAIYTR 103
>sp|Q6FPX5|RS25_CANGA 40S ribosomal protein S25 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPS25
PE=3 SV=1
Length = 107
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 57 ISGSLASRAIKDLVARGSIRMISAYASQQIYTR 89
I GS+A A++ L G I+ IS ++ Q IYTR
Sbjct: 71 IGGSMARVALRHLEREGIIKPISKHSKQAIYTR 103
>sp|Q03409|RS25_DICDI 40S ribosomal protein S25 OS=Dictyostelium discoideum GN=rps25 PE=3
SV=1
Length = 110
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 58 SGSLASRAIKDLVARGSIRMISAYASQQIYTRV 90
+GSLA RAIK+L+++G I+ I +YT+
Sbjct: 77 NGSLARRAIKELLSKGLIKQIIKGHGNGVYTKA 109
>sp|P23229|ITA6_HUMAN Integrin alpha-6 OS=Homo sapiens GN=ITGA6 PE=1 SV=4
Length = 1130
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 25 SCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLAS 63
+CG S G + VK CF T N AG+N + I G+L +
Sbjct: 527 ACGAPS--GICLQVKSCFEYTANPAGYNPSISIVGTLEA 563
>sp|Q51080|CMCH_NOCLA 3'-hydroxymethylcephem-O-carbamoyltransferase OS=Nocardia
lactamdurans GN=cmcH PE=3 SV=1
Length = 520
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 23 VRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYA 82
V GKV E + L F +G + H+ GS + ++D R++SA+A
Sbjct: 410 VEDLGKVFHEDFEDPYMLYFRRVRESSGLRAVTHVDGSARVQTVRDSGNPQMHRLLSAFA 469
Query: 83 SQQIYTRVINT 93
+Q+ + NT
Sbjct: 470 AQRGVGVLCNT 480
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,948,578
Number of Sequences: 539616
Number of extensions: 936606
Number of successful extensions: 2178
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2138
Number of HSP's gapped (non-prelim): 38
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)