Query 038379
Match_columns 93
No_of_seqs 109 out of 193
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 17:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Z RP45, S31, YS23, 40S ri 100.0 7.3E-30 2.5E-34 178.2 1.0 69 1-93 39-107 (108)
2 3iz6_V 40S ribosomal protein S 99.9 5.2E-30 1.8E-34 178.9 -0.6 69 1-93 40-108 (108)
3 2xzm_8 RPS25E,; ribosome, tran 99.9 4.3E-27 1.5E-31 171.3 3.9 69 1-92 42-110 (143)
4 1xn7_A Hypothetical protein YH 92.6 0.047 1.6E-06 34.5 1.6 33 43-79 18-50 (78)
5 4ham_A LMO2241 protein; struct 92.5 0.048 1.6E-06 35.7 1.6 59 7-79 14-72 (134)
6 3tqn_A Transcriptional regulat 92.5 0.05 1.7E-06 34.9 1.6 31 49-79 37-67 (113)
7 2b0l_A GTP-sensing transcripti 91.7 0.097 3.3E-06 33.8 2.3 36 39-79 42-77 (102)
8 2qvo_A Uncharacterized protein 91.6 0.18 6E-06 30.8 3.3 29 43-75 32-60 (95)
9 2dk5_A DNA-directed RNA polyme 91.6 0.11 3.6E-06 33.5 2.3 42 43-88 38-81 (91)
10 2k02_A Ferrous iron transport 91.3 0.094 3.2E-06 34.2 1.9 33 43-79 18-50 (87)
11 3ic7_A Putative transcriptiona 91.2 0.12 4.2E-06 33.8 2.4 59 7-79 11-69 (126)
12 2htj_A P fimbrial regulatory p 91.2 0.082 2.8E-06 31.6 1.5 32 43-78 16-47 (81)
13 1tbx_A ORF F-93, hypothetical 91.2 0.2 7E-06 30.2 3.2 30 52-81 33-62 (99)
14 3neu_A LIN1836 protein; struct 90.8 0.082 2.8E-06 34.5 1.3 31 49-79 41-71 (125)
15 3by6_A Predicted transcription 90.0 0.13 4.6E-06 33.7 1.8 59 7-79 11-69 (126)
16 3cuo_A Uncharacterized HTH-typ 89.9 0.3 1E-05 28.7 3.2 41 43-88 40-80 (99)
17 1sfx_A Conserved hypothetical 89.8 0.32 1.1E-05 28.5 3.2 34 43-80 36-69 (109)
18 2ek5_A Predicted transcription 89.5 0.11 3.7E-06 34.5 1.0 60 6-79 3-62 (129)
19 3eco_A MEPR; mutlidrug efflux 89.4 0.27 9.2E-06 30.3 2.7 33 43-79 49-81 (139)
20 2d1h_A ST1889, 109AA long hypo 89.1 0.19 6.4E-06 29.6 1.8 33 43-79 38-70 (109)
21 2nnn_A Probable transcriptiona 88.7 0.33 1.1E-05 29.6 2.8 33 43-79 54-86 (140)
22 3edp_A LIN2111 protein; APC883 88.3 0.2 6.7E-06 35.7 1.8 32 48-79 36-67 (236)
23 3df8_A Possible HXLR family tr 88.3 0.34 1.2E-05 30.8 2.8 36 51-88 48-84 (111)
24 3bdd_A Regulatory protein MARR 88.2 0.34 1.2E-05 29.6 2.6 33 43-79 47-79 (142)
25 2fbi_A Probable transcriptiona 88.1 0.45 1.5E-05 29.1 3.1 33 43-79 52-84 (142)
26 1okr_A MECI, methicillin resis 88.0 0.45 1.6E-05 29.2 3.1 44 43-91 26-73 (123)
27 2gxg_A 146AA long hypothetical 87.9 0.32 1.1E-05 30.0 2.4 33 43-79 52-84 (146)
28 3bj6_A Transcriptional regulat 87.9 0.23 8E-06 31.0 1.8 33 43-79 56-88 (152)
29 3f3x_A Transcriptional regulat 87.9 0.42 1.5E-05 29.7 2.9 33 43-79 52-84 (144)
30 2oqg_A Possible transcriptiona 87.7 0.49 1.7E-05 28.7 3.1 41 43-88 36-76 (114)
31 2bv6_A MGRA, HTH-type transcri 87.7 0.28 9.5E-06 30.4 2.0 33 43-79 53-85 (142)
32 2pex_A Transcriptional regulat 87.5 0.26 8.7E-06 31.0 1.8 33 43-79 63-95 (153)
33 3oop_A LIN2960 protein; protei 87.5 0.26 8.9E-06 30.7 1.8 33 43-79 53-85 (143)
34 1ub9_A Hypothetical protein PH 87.3 0.66 2.2E-05 27.2 3.4 33 43-79 32-64 (100)
35 1lj9_A Transcriptional regulat 87.3 0.42 1.4E-05 29.5 2.6 33 43-79 45-77 (144)
36 3bpv_A Transcriptional regulat 87.2 0.43 1.5E-05 29.2 2.6 33 43-79 45-77 (138)
37 3bro_A Transcriptional regulat 87.2 0.24 8.2E-06 30.4 1.5 33 43-79 52-84 (141)
38 3eet_A Putative GNTR-family tr 87.2 0.16 5.5E-06 37.2 0.8 60 6-79 28-87 (272)
39 2jt1_A PEFI protein; solution 87.2 0.38 1.3E-05 30.3 2.4 31 51-81 30-60 (77)
40 3s2w_A Transcriptional regulat 87.1 0.25 8.6E-06 31.5 1.6 33 43-79 66-98 (159)
41 2hr3_A Probable transcriptiona 87.1 0.25 8.4E-06 30.7 1.5 33 43-79 52-84 (147)
42 3hsr_A HTH-type transcriptiona 87.0 0.29 9.8E-06 30.7 1.8 33 43-79 52-84 (140)
43 3tgn_A ADC operon repressor AD 86.8 0.2 6.7E-06 31.1 0.9 33 43-79 53-85 (146)
44 3e6m_A MARR family transcripti 86.8 0.28 9.7E-06 31.4 1.7 33 43-79 69-101 (161)
45 2pg4_A Uncharacterized protein 86.7 0.34 1.1E-05 29.3 1.9 30 43-76 32-62 (95)
46 2fbh_A Transcriptional regulat 86.7 0.27 9.2E-06 30.2 1.5 33 43-79 54-86 (146)
47 1v4r_A Transcriptional repress 86.7 0.067 2.3E-06 33.2 -1.3 28 51-78 41-68 (102)
48 1hw1_A FADR, fatty acid metabo 86.6 0.26 9E-06 33.8 1.6 60 6-79 6-65 (239)
49 3jth_A Transcription activator 86.5 0.47 1.6E-05 28.6 2.5 41 43-88 38-78 (98)
50 2hzt_A Putative HTH-type trans 86.5 1 3.5E-05 28.0 4.2 33 43-79 29-62 (107)
51 2qww_A Transcriptional regulat 86.4 0.29 1E-05 30.7 1.6 31 43-77 57-87 (154)
52 2a61_A Transcriptional regulat 86.3 0.51 1.8E-05 29.0 2.7 33 43-79 49-81 (145)
53 2kko_A Possible transcriptiona 86.3 0.53 1.8E-05 29.5 2.8 41 43-88 40-80 (108)
54 2v7f_A RPS19, RPS19E SSU ribos 86.2 0.32 1.1E-05 34.1 1.8 30 49-78 71-114 (150)
55 1p6r_A Penicillinase repressor 86.2 0.88 3E-05 26.8 3.6 44 43-91 25-72 (82)
56 2vn2_A DNAD, chromosome replic 86.0 0.27 9.1E-06 32.3 1.3 37 39-80 50-86 (128)
57 1z91_A Organic hydroperoxide r 86.0 0.27 9.2E-06 30.5 1.2 33 43-79 56-88 (147)
58 1ku9_A Hypothetical protein MJ 86.0 0.32 1.1E-05 29.7 1.6 33 43-79 43-75 (152)
59 3nrv_A Putative transcriptiona 85.9 0.24 8.3E-06 30.9 1.0 32 43-78 56-87 (148)
60 2wv0_A YVOA, HTH-type transcri 85.9 0.22 7.4E-06 35.6 0.8 58 7-78 10-67 (243)
61 2fu4_A Ferric uptake regulatio 85.7 0.51 1.7E-05 27.8 2.3 38 51-88 39-81 (83)
62 2lkp_A Transcriptional regulat 85.7 0.76 2.6E-05 28.4 3.2 38 51-89 51-88 (119)
63 3g3z_A NMB1585, transcriptiona 85.7 0.28 9.6E-06 30.6 1.2 33 43-79 47-79 (145)
64 2eth_A Transcriptional regulat 85.5 0.49 1.7E-05 30.0 2.3 33 43-79 60-92 (154)
65 3u2r_A Regulatory protein MARR 85.4 0.61 2.1E-05 30.0 2.7 33 43-79 64-96 (168)
66 1s3j_A YUSO protein; structura 85.3 0.37 1.3E-05 30.1 1.7 33 43-79 53-85 (155)
67 3bwg_A Uncharacterized HTH-typ 85.3 0.34 1.2E-05 34.4 1.7 31 48-78 32-62 (239)
68 3cjn_A Transcriptional regulat 85.3 0.39 1.3E-05 30.5 1.8 33 43-79 68-100 (162)
69 2rdp_A Putative transcriptiona 85.3 0.53 1.8E-05 29.2 2.4 33 43-79 58-90 (150)
70 1jgs_A Multiple antibiotic res 85.2 0.31 1E-05 29.9 1.2 33 43-79 50-82 (138)
71 3fm5_A Transcriptional regulat 85.2 0.27 9.1E-06 31.0 0.9 33 43-79 56-88 (150)
72 3ech_A MEXR, multidrug resista 85.1 0.21 7.2E-06 31.2 0.4 33 43-79 53-85 (142)
73 4fx0_A Probable transcriptiona 85.0 0.26 8.8E-06 32.2 0.8 34 43-80 54-87 (148)
74 4hbl_A Transcriptional regulat 84.9 0.29 9.9E-06 31.0 1.0 33 43-79 57-89 (149)
75 2x4h_A Hypothetical protein SS 84.6 0.34 1.1E-05 30.5 1.2 33 43-79 33-65 (139)
76 2ra5_A Putative transcriptiona 84.5 0.23 8E-06 35.5 0.5 32 48-79 43-74 (247)
77 3deu_A Transcriptional regulat 84.5 0.38 1.3E-05 31.5 1.5 33 43-79 70-102 (166)
78 3f8m_A GNTR-family protein tra 84.2 0.38 1.3E-05 34.5 1.5 56 6-77 13-68 (248)
79 1xmk_A Double-stranded RNA-spe 84.1 1.1 3.6E-05 28.6 3.4 32 43-78 27-59 (79)
80 3kp7_A Transcriptional regulat 83.9 0.24 8.1E-06 31.2 0.3 31 43-77 53-83 (151)
81 3f6o_A Probable transcriptiona 83.9 1.3 4.6E-05 27.8 3.8 41 43-88 33-73 (118)
82 3r0a_A Putative transcriptiona 83.8 0.86 2.9E-05 29.3 2.9 33 43-79 44-76 (123)
83 3jw4_A Transcriptional regulat 83.7 0.24 8.3E-06 31.1 0.3 33 43-79 59-91 (148)
84 2nyx_A Probable transcriptiona 83.6 0.77 2.6E-05 29.8 2.7 33 43-79 61-93 (168)
85 2frh_A SARA, staphylococcal ac 83.6 0.35 1.2E-05 30.5 1.0 32 43-78 55-86 (127)
86 1q1h_A TFE, transcription fact 83.6 0.76 2.6E-05 28.3 2.5 28 51-78 39-66 (110)
87 1on2_A Transcriptional regulat 83.5 0.38 1.3E-05 30.4 1.1 32 43-78 24-55 (142)
88 1z7u_A Hypothetical protein EF 83.5 0.89 3E-05 28.5 2.8 33 43-79 37-70 (112)
89 3nqo_A MARR-family transcripti 83.5 0.65 2.2E-05 31.1 2.3 33 43-79 59-91 (189)
90 3bja_A Transcriptional regulat 83.4 0.31 1.1E-05 29.7 0.6 33 43-79 49-81 (139)
91 4b8x_A SCO5413, possible MARR- 83.3 0.53 1.8E-05 30.4 1.8 33 43-79 53-85 (147)
92 2f2e_A PA1607; transcription f 83.2 1.2 4.2E-05 29.5 3.6 29 51-79 43-71 (146)
93 2v79_A DNA replication protein 83.1 0.67 2.3E-05 31.4 2.3 41 30-79 45-85 (135)
94 3cdh_A Transcriptional regulat 82.9 0.46 1.6E-05 29.9 1.3 32 43-78 59-90 (155)
95 2xvc_A ESCRT-III, SSO0910; cel 82.9 0.7 2.4E-05 29.4 2.2 27 51-77 31-57 (59)
96 1r1u_A CZRA, repressor protein 82.6 0.98 3.4E-05 27.9 2.8 41 43-88 41-81 (106)
97 3sxy_A Transcriptional regulat 82.6 0.43 1.5E-05 32.7 1.2 32 48-79 38-69 (218)
98 2fa5_A Transcriptional regulat 82.3 0.4 1.4E-05 30.3 0.9 32 43-78 65-96 (162)
99 2fsw_A PG_0823 protein; alpha- 82.3 1.5 5.2E-05 27.1 3.6 33 43-79 40-73 (107)
100 3k0l_A Repressor protein; heli 82.2 0.35 1.2E-05 31.0 0.6 33 43-79 62-94 (162)
101 1r1t_A Transcriptional repress 81.7 1.5 5.1E-05 28.3 3.5 38 51-89 65-102 (122)
102 4aik_A Transcriptional regulat 81.4 0.55 1.9E-05 30.7 1.3 33 43-79 48-80 (151)
103 2di3_A Bacterial regulatory pr 81.3 0.43 1.5E-05 33.1 0.8 30 48-77 31-60 (239)
104 2h09_A Transcriptional regulat 81.3 0.58 2E-05 30.1 1.4 32 43-78 56-87 (155)
105 2jsc_A Transcriptional regulat 81.3 1.3 4.6E-05 28.0 3.1 41 43-88 36-76 (118)
106 3boq_A Transcriptional regulat 80.9 0.3 1E-05 30.9 -0.1 32 43-78 64-95 (160)
107 3c7j_A Transcriptional regulat 80.6 0.63 2.1E-05 32.9 1.5 32 48-79 52-83 (237)
108 2hs5_A Putative transcriptiona 80.4 0.66 2.3E-05 32.7 1.6 32 48-79 54-85 (239)
109 3ihu_A Transcriptional regulat 80.1 0.64 2.2E-05 31.9 1.3 32 48-79 42-73 (222)
110 1u2w_A CADC repressor, cadmium 80.1 0.99 3.4E-05 28.8 2.2 41 43-88 58-98 (122)
111 3u5c_T 40S ribosomal protein S 79.8 1.2 4.2E-05 31.9 2.8 24 55-78 94-117 (144)
112 2k4b_A Transcriptional regulat 79.5 2.3 7.7E-05 27.4 3.8 40 51-91 55-98 (99)
113 1i1g_A Transcriptional regulat 79.5 0.57 2E-05 29.6 0.9 28 51-78 24-51 (141)
114 2gqq_A Leucine-responsive regu 79.4 0.26 8.8E-06 32.8 -0.8 28 50-77 32-59 (163)
115 2cfx_A HTH-type transcriptiona 79.4 1.2 4.2E-05 28.8 2.5 32 43-78 21-52 (144)
116 3cta_A Riboflavin kinase; stru 79.3 1.6 5.4E-05 30.3 3.2 32 43-78 29-60 (230)
117 2w25_A Probable transcriptiona 79.0 1.2 4.2E-05 28.7 2.4 33 43-79 23-55 (150)
118 1qbj_A Protein (double-strande 78.6 0.99 3.4E-05 28.4 1.8 34 43-80 29-62 (81)
119 2dbb_A Putative HTH-type trans 78.6 1.1 3.9E-05 28.9 2.1 33 43-79 25-57 (151)
120 3iz6_S 40S ribosomal protein S 78.5 1.3 4.5E-05 31.9 2.6 25 54-78 95-119 (146)
121 1y0u_A Arsenical resistance op 78.2 1.3 4.4E-05 26.8 2.2 33 43-79 45-77 (96)
122 1uly_A Hypothetical protein PH 77.9 1.7 6E-05 30.4 3.1 43 43-89 35-81 (192)
123 3pqk_A Biofilm growth-associat 77.7 1 3.5E-05 27.3 1.6 41 43-88 38-78 (102)
124 2xzm_T RPS19E; ribosome, trans 77.5 1.7 5.8E-05 31.6 3.0 23 55-77 97-119 (155)
125 2cg4_A Regulatory protein ASNC 77.1 1.3 4.3E-05 28.8 2.0 33 43-79 24-56 (152)
126 2qc0_A Uncharacterized protein 76.7 1.4 4.9E-05 33.5 2.5 41 43-88 313-353 (373)
127 1oyi_A Double-stranded RNA-bin 76.6 0.97 3.3E-05 29.4 1.3 35 43-81 32-66 (82)
128 3hrs_A Metalloregulator SCAR; 76.5 0.89 3E-05 31.9 1.2 33 43-79 22-54 (214)
129 1qgp_A Protein (double strande 76.5 1.1 3.9E-05 27.5 1.6 34 43-80 33-66 (77)
130 2fxa_A Protease production reg 76.4 1.3 4.3E-05 30.6 2.0 33 43-79 64-96 (207)
131 2p5v_A Transcriptional regulat 76.2 1.6 5.6E-05 28.6 2.4 32 43-78 26-57 (162)
132 2pn6_A ST1022, 150AA long hypo 75.5 1.1 3.7E-05 28.8 1.3 28 51-78 23-50 (150)
133 1fx7_A Iron-dependent represso 75.5 1.1 3.8E-05 31.3 1.5 29 51-79 30-58 (230)
134 1yyv_A Putative transcriptiona 75.4 2.3 7.9E-05 27.9 3.0 33 43-79 50-83 (131)
135 1r7j_A Conserved hypothetical 75.3 1.1 3.9E-05 28.3 1.4 32 43-78 22-53 (95)
136 4a5n_A Uncharacterized HTH-typ 74.8 3.2 0.00011 27.9 3.6 29 51-79 45-74 (131)
137 2yu3_A DNA-directed RNA polyme 74.3 1.2 4.2E-05 29.4 1.4 29 51-79 59-87 (95)
138 1sd4_A Penicillinase repressor 73.6 2.9 0.0001 25.6 3.0 41 43-88 26-70 (126)
139 2y75_A HTH-type transcriptiona 72.9 2.3 7.8E-05 27.0 2.4 33 43-79 28-60 (129)
140 2ia0_A Putative HTH-type trans 72.4 2.2 7.6E-05 28.9 2.4 32 43-78 33-64 (171)
141 2cyy_A Putative HTH-type trans 72.2 1.3 4.6E-05 28.7 1.2 32 43-78 23-54 (151)
142 2qq9_A Diphtheria toxin repres 71.9 1.9 6.5E-05 30.2 2.0 28 51-78 30-57 (226)
143 2heo_A Z-DNA binding protein 1 71.9 1.7 5.7E-05 25.7 1.5 31 43-77 27-57 (67)
144 2qlz_A Transcription factor PF 71.7 6.9 0.00023 28.6 5.0 42 43-88 27-73 (232)
145 3f6v_A Possible transcriptiona 71.5 3.8 0.00013 27.6 3.4 42 43-89 73-114 (151)
146 3ryp_A Catabolite gene activat 70.6 3.4 0.00012 26.4 2.8 35 39-77 165-199 (210)
147 1hsj_A Fusion protein consisti 70.4 2.2 7.5E-05 31.7 2.1 33 43-79 422-454 (487)
148 3l7w_A Putative uncharacterize 70.3 7.3 0.00025 24.4 4.3 28 52-79 33-60 (108)
149 3i4p_A Transcriptional regulat 70.0 1.7 5.9E-05 28.8 1.4 28 51-78 23-50 (162)
150 3iwz_A CAP-like, catabolite ac 69.8 3.6 0.00012 26.7 2.8 35 39-77 185-219 (230)
151 3b73_A PHIH1 repressor-like pr 68.3 2.4 8E-05 28.1 1.7 33 42-78 28-62 (111)
152 3eqx_A FIC domain containing t 68.3 2.9 9.8E-05 32.4 2.4 41 42-87 312-352 (373)
153 2g9w_A Conserved hypothetical 67.7 3.6 0.00012 26.4 2.5 41 43-88 26-70 (138)
154 2w48_A Sorbitol operon regulat 66.7 3.1 0.00011 30.3 2.3 33 43-79 23-56 (315)
155 2p4w_A Transcriptional regulat 65.7 4.8 0.00016 28.5 3.0 34 43-80 30-63 (202)
156 1p4x_A Staphylococcal accessor 64.8 2.5 8.7E-05 30.7 1.5 33 43-79 176-208 (250)
157 2fbk_A Transcriptional regulat 63.1 0.66 2.3E-05 30.4 -1.7 33 43-79 88-120 (181)
158 2e1c_A Putative HTH-type trans 63.0 2.8 9.6E-05 28.5 1.3 28 51-78 47-74 (171)
159 2oz6_A Virulence factor regula 61.7 6.2 0.00021 25.1 2.7 34 40-77 163-196 (207)
160 3f8b_A Transcriptional regulat 59.9 16 0.00056 23.2 4.5 26 54-79 42-67 (116)
161 3k2z_A LEXA repressor; winged 59.7 4.1 0.00014 27.7 1.7 28 51-78 30-57 (196)
162 1ylf_A RRF2 family protein; st 59.6 5.5 0.00019 26.3 2.3 34 43-80 32-65 (149)
163 3lwf_A LIN1550 protein, putati 59.5 6.2 0.00021 27.1 2.6 36 43-82 46-81 (159)
164 3t8r_A Staphylococcus aureus C 57.9 6.1 0.00021 26.2 2.3 36 40-80 28-63 (143)
165 3tdu_C Cullin-1, CUL-1; E2:E3, 57.5 12 0.00042 23.5 3.6 37 51-87 39-75 (77)
166 1sfu_A 34L protein; protein/Z- 57.3 8.6 0.0003 24.8 2.8 35 43-81 31-65 (75)
167 1wi9_A Protein C20ORF116 homol 56.6 9.6 0.00033 24.6 2.9 45 39-88 20-64 (72)
168 3kcc_A Catabolite gene activat 55.9 7.6 0.00026 26.5 2.5 35 39-77 215-249 (260)
169 2zcw_A TTHA1359, transcription 54.7 9.4 0.00032 24.5 2.7 31 43-77 148-178 (202)
170 2gau_A Transcriptional regulat 54.0 4.6 0.00016 26.4 1.1 28 50-77 185-212 (232)
171 2wte_A CSA3; antiviral protein 53.0 5.7 0.00019 28.9 1.6 32 43-78 168-199 (244)
172 3dv8_A Transcriptional regulat 51.5 8.1 0.00028 24.8 2.0 27 51-77 175-201 (220)
173 1xd7_A YWNA; structural genomi 51.3 6.8 0.00023 25.7 1.6 30 51-80 29-58 (145)
174 3la7_A Global nitrogen regulat 49.9 5.7 0.00019 26.6 1.1 29 49-77 197-225 (243)
175 4ev0_A Transcription regulator 49.4 8.8 0.0003 24.5 1.9 27 51-77 169-195 (216)
176 2o03_A Probable zinc uptake re 48.4 14 0.00047 23.8 2.8 38 51-88 32-74 (131)
177 3b02_A Transcriptional regulat 48.1 11 0.00036 24.2 2.2 34 40-77 138-171 (195)
178 3dkw_A DNR protein; CRP-FNR, H 47.8 5.9 0.0002 25.6 0.9 29 49-77 182-210 (227)
179 3e97_A Transcriptional regulat 47.6 6.5 0.00022 25.6 1.1 27 51-77 181-207 (231)
180 2o0m_A Transcriptional regulat 47.5 3.9 0.00013 30.4 0.0 30 43-76 36-65 (345)
181 1ft9_A Carbon monoxide oxidati 47.0 6.5 0.00022 25.7 1.0 27 51-77 169-195 (222)
182 3cuq_B Vacuolar protein-sortin 46.3 6 0.00021 28.9 0.8 28 51-78 174-201 (218)
183 2fmy_A COOA, carbon monoxide o 46.2 10 0.00036 24.5 1.9 29 49-77 171-199 (220)
184 3o2p_E Cell division control p 46.0 22 0.00077 22.9 3.5 36 51-87 51-86 (88)
185 1xma_A Predicted transcription 45.6 38 0.0013 22.6 4.7 25 55-79 72-96 (145)
186 3d0s_A Transcriptional regulat 44.4 7.6 0.00026 25.3 1.0 28 50-77 182-209 (227)
187 3e6c_C CPRK, cyclic nucleotide 44.2 15 0.00053 24.4 2.5 30 48-77 180-209 (250)
188 1u5t_B Defective in vacuolar p 43.6 13 0.00046 26.1 2.3 29 51-79 126-154 (169)
189 2p8t_A Hypothetical protein PH 42.4 12 0.00042 27.4 2.0 28 51-78 36-63 (200)
190 2zkz_A Transcriptional repress 42.3 14 0.00047 22.5 2.0 40 43-88 43-82 (99)
191 2fe3_A Peroxide operon regulat 41.9 13 0.00043 24.4 1.8 33 56-88 53-85 (145)
192 1zyb_A Transcription regulator 41.9 8.1 0.00028 25.6 0.9 32 42-77 187-218 (232)
193 1o5l_A Transcriptional regulat 41.8 5.4 0.00019 26.1 0.0 27 51-77 170-196 (213)
194 3cuq_A Vacuolar-sorting protei 41.7 7.3 0.00025 29.4 0.7 27 51-77 174-200 (234)
195 3lmm_A Uncharacterized protein 40.9 5.7 0.0002 32.5 0.0 34 43-80 532-565 (583)
196 1p4x_A Staphylococcal accessor 39.6 8.5 0.00029 27.9 0.7 33 43-79 52-84 (250)
197 1stz_A Heat-inducible transcri 39.0 15 0.0005 28.0 2.0 33 43-79 38-72 (338)
198 1bja_A Transcription regulator 38.7 11 0.00037 24.9 1.1 30 43-76 32-62 (95)
199 1iuy_A Cullin-3 homologue; win 38.6 44 0.0015 21.5 4.0 37 51-87 54-90 (92)
200 2dql_A PEX protein; circadian 37.9 74 0.0025 20.2 5.0 26 54-79 51-76 (115)
201 2bgc_A PRFA; bacterial infecti 37.7 10 0.00034 25.2 0.8 28 50-77 174-202 (238)
202 2w57_A Ferric uptake regulatio 37.6 51 0.0017 21.7 4.3 33 56-88 49-81 (150)
203 2pjp_A Selenocysteine-specific 37.5 13 0.00046 23.7 1.4 58 3-80 58-115 (121)
204 3qph_A TRMB, A global transcri 37.3 6 0.00021 30.0 -0.4 40 43-88 34-73 (342)
205 2obp_A Putative DNA-binding pr 37.0 38 0.0013 22.0 3.5 34 43-80 38-71 (96)
206 2xig_A Ferric uptake regulatio 36.5 53 0.0018 21.6 4.3 33 56-88 58-90 (150)
207 3hhh_A Transcriptional regulat 36.4 60 0.0021 20.8 4.4 25 55-79 42-66 (116)
208 4esb_A Transcriptional regulat 36.3 59 0.002 20.6 4.4 25 55-79 38-62 (115)
209 2esh_A Conserved hypothetical 36.2 26 0.00088 22.1 2.5 31 57-87 46-80 (118)
210 1u5t_A Appears to BE functiona 36.1 11 0.00036 28.4 0.8 31 43-77 183-213 (233)
211 3k69_A Putative transcription 36.0 8.3 0.00028 26.3 0.2 34 43-80 30-63 (162)
212 1mkm_A ICLR transcriptional re 35.9 14 0.00047 25.9 1.3 32 43-78 25-56 (249)
213 1mzb_A Ferric uptake regulatio 34.6 39 0.0013 21.7 3.3 33 56-88 50-82 (136)
214 4esf_A PADR-like transcription 33.9 66 0.0023 20.5 4.3 24 56-79 41-64 (117)
215 3mwm_A ZUR, putative metal upt 33.4 58 0.002 21.2 4.0 33 56-88 45-77 (139)
216 3v4m_A Splicing factor U2AF 65 33.2 53 0.0018 20.3 3.7 59 4-72 20-82 (105)
217 2xrn_A HTH-type transcriptiona 32.6 17 0.00059 25.4 1.4 32 43-78 23-54 (241)
218 3eyy_A Putative iron uptake re 32.2 54 0.0019 21.4 3.7 33 56-88 49-81 (145)
219 2e1n_A PEX, period extender; c 31.5 1.1E+02 0.0038 20.3 5.3 26 54-79 63-88 (138)
220 2co5_A Viral protein F93; vira 31.0 67 0.0023 20.3 3.9 32 56-88 41-72 (99)
221 2o0y_A Transcriptional regulat 30.9 27 0.00092 24.7 2.2 32 43-78 40-71 (260)
222 3ri2_A Transcriptional regulat 30.4 94 0.0032 20.2 4.7 25 55-79 48-72 (123)
223 2hoe_A N-acetylglucosamine kin 28.8 21 0.00071 26.3 1.3 30 51-80 39-68 (380)
224 3l09_A Putative transcriptiona 27.9 57 0.002 24.5 3.6 37 51-88 51-87 (266)
225 1yg2_A Gene activator APHA; vi 27.0 58 0.002 21.7 3.2 27 53-79 31-57 (179)
226 2g7u_A Transcriptional regulat 26.9 32 0.0011 24.2 2.0 32 43-78 31-62 (257)
227 3r4k_A Transcriptional regulat 26.4 29 0.00098 24.6 1.7 33 43-79 23-55 (260)
228 2qlz_A Transcription factor PF 26.1 22 0.00075 25.9 1.0 31 43-77 180-210 (232)
229 1z05_A Transcriptional regulat 25.6 26 0.0009 26.2 1.4 33 43-79 55-87 (429)
230 2pi2_A Replication protein A 3 25.0 15 0.00052 26.8 0.0 26 51-76 230-256 (270)
231 2jml_A DNA binding domain/tran 24.8 16 0.00056 21.7 0.1 40 42-89 6-47 (81)
232 1z6r_A MLC protein; transcript 24.6 22 0.00075 26.2 0.8 33 43-79 32-64 (406)
233 2zfw_A PEX; five alpha-helices 24.1 54 0.0019 22.3 2.7 26 54-79 73-98 (148)
234 4fxi_A MRNA interferase RELE; 23.9 29 0.001 22.0 1.2 29 39-71 4-32 (95)
235 3dpl_C Cullin-5; ubiquitin, NE 23.3 80 0.0027 24.1 3.8 37 51-87 344-380 (382)
236 3ln3_A Dihydrodiol dehydrogena 23.3 27 0.00093 25.3 1.1 17 62-78 148-164 (324)
237 3o3r_A Aldo-keto reductase fam 23.2 27 0.00093 25.3 1.1 21 62-82 141-163 (316)
238 2ia2_A Putative transcriptiona 23.0 30 0.001 24.5 1.2 32 43-78 38-69 (265)
239 3s6e_A RNA-binding protein 39; 22.4 1.1E+02 0.0039 19.4 3.8 57 4-72 22-78 (114)
240 4gac_A Alcohol dehydrogenase [ 22.2 22 0.00077 25.4 0.4 21 62-82 142-164 (324)
241 3elk_A Putative transcriptiona 22.1 1.1E+02 0.0038 19.4 3.8 23 57-79 45-67 (117)
242 3fx3_A Cyclic nucleotide-bindi 21.9 40 0.0014 21.9 1.6 26 49-74 182-207 (237)
243 1gng_X Frattide, glycogen synt 21.6 29 0.001 20.4 0.8 21 54-74 18-38 (39)
244 2vxz_A Pyrsv_GP04; viral prote 21.6 47 0.0016 24.6 2.0 30 51-80 30-59 (165)
245 1j5y_A Transcriptional regulat 21.3 25 0.00084 23.8 0.5 31 43-77 38-69 (187)
246 2h9b_A HTH-type transcriptiona 21.2 20 0.00069 24.2 0.0 28 51-78 21-48 (312)
247 4f40_A Prostaglandin F2-alpha 21.0 32 0.0011 24.7 1.1 17 62-78 134-150 (288)
248 2khe_A Toxin RELE, toxin-like 20.8 58 0.002 18.0 1.9 26 39-68 4-29 (89)
249 2ve8_A FTSK, DNA translocase F 20.7 34 0.0012 21.9 1.0 30 51-80 30-59 (73)
250 3dhx_A Methionine import ATP-b 20.6 1.5E+02 0.0053 18.5 4.1 27 55-81 69-97 (106)
No 1
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=99.95 E-value=7.3e-30 Score=178.15 Aligned_cols=69 Identities=30% Similarity=0.431 Sum_probs=65.9
Q ss_pred CeeechhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 1 ~VlfDk~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
+|+||++||||+++|||+ + |+| ||++ ++||++|+|||||+||+||+++|+|++|++
T Consensus 39 ~VlfDk~t~dkl~KEVpk---------------~----KlI-Tpsv----lseRlkI~gSLAR~aLreL~~kGlIk~V~k 94 (108)
T 3u5c_Z 39 AVILDQEKYDRILKEVPT---------------Y----RYV-SVSV----LVDRLKIGGSLARIALRHLEKEGIIKPISK 94 (108)
T ss_dssp CSSCTTHHHHHHHHHCSS---------------C----SSB-SHHH----HHHTTCCCTTHHHHHHHHHSSSSSCEEEEC
T ss_pred ceeeCHHHHHHHHHHccC---------------C----eEE-eHHH----hhhhhhhhHHHHHHHHHHHHHCCCEEEEec
Confidence 599999999999999999 9 999 9999 999999999999999999999999999999
Q ss_pred ccceEEEEeecCC
Q 038379 81 YASQQIYTRVINT 93 (93)
Q Consensus 81 ~~~Q~IYTR~~~~ 93 (93)
|++|.||||++++
T Consensus 95 h~~q~IYTr~~~~ 107 (108)
T 3u5c_Z 95 HSKQAIYTRATAS 107 (108)
T ss_dssp CSSCCEEECCC--
T ss_pred CCCEEEEecCccC
Confidence 9999999999864
No 2
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.95 E-value=5.2e-30 Score=178.90 Aligned_cols=69 Identities=46% Similarity=0.639 Sum_probs=67.0
Q ss_pred CeeechhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 1 ~VlfDk~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
+|+||++||||+++|||+ + |+| ||++ ++||++|+|||||+||+||+++|+|++|++
T Consensus 40 ~Vl~Dk~t~dkl~KEVpk---------------~----KlI-Tpsv----lseRlkI~gSLAR~aLreL~~kGlIk~V~k 95 (108)
T 3iz6_V 40 SVLFDKATYDKLLSEVPK---------------Y----KQI-TPSV----LSERLRINGSLARQAIKDLESRGAIRVVSV 95 (108)
T ss_dssp HHHHSSHHHHHHHHHHHH---------------H----SSE-EEHH----HHHHHHTCCHHHHHHHHHHHHHHTSCEECC
T ss_pred cEeECHHHHHHHHHHccC---------------C----eEE-eHHH----HHhhhcccHHHHHHHHHHHHHCCCEEEEec
Confidence 489999999999999999 9 999 9999 999999999999999999999999999999
Q ss_pred ccceEEEEeecCC
Q 038379 81 YASQQIYTRVINT 93 (93)
Q Consensus 81 ~~~Q~IYTR~~~~ 93 (93)
|++|.||||++++
T Consensus 96 h~~q~IYTr~~~~ 108 (108)
T 3iz6_V 96 HSSQLIYTRATNA 108 (108)
T ss_dssp CTTSCCEEESCCC
T ss_pred CCCEEEEecCcCC
Confidence 9999999999875
No 3
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=99.93 E-value=4.3e-27 Score=171.26 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=65.9
Q ss_pred CeeechhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 1 MVLFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 1 ~VlfDk~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
+||||++||||+++|||+ + +||| ||++ ++||++|+|||||++|+||+++|+|++|+.
T Consensus 42 ~VlfDk~tydKL~KEVpk---------------~---gKlI-Tpsv----lseRlkI~gSLARkaLreL~~kGlIk~V~k 98 (143)
T 2xzm_8 42 AVFIEKKNVESIINNPSK---------------V---GKVL-TVST----VVEKLKVNGSLARQLMRTMADRKLVEKVAK 98 (143)
T ss_dssp BSCCCHHHHHHHHTCCTT---------------S---CSEE-CHHH----HHHHHCBCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ceeecHHHHHHHHHHhcc---------------c---ceee-cHHH----HHHHhcchHHHHHHHHHHHHHCCCEEEEec
Confidence 589999999999999999 4 2898 9999 999999999999999999999999999999
Q ss_pred ccceEEEEeecC
Q 038379 81 YASQQIYTRVIN 92 (93)
Q Consensus 81 ~~~Q~IYTR~~~ 92 (93)
|++|.||||+++
T Consensus 99 h~~q~IYTra~~ 110 (143)
T 2xzm_8 99 NGNQWVYSVIGG 110 (143)
T ss_dssp ETTEEEEEETTC
T ss_pred CCCeEEEecCCc
Confidence 999999999875
No 4
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=92.64 E-value=0.047 Score=34.54 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=30.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++.++++-+-.|+-|.+|+++|.|+.+.
T Consensus 18 sv~e----La~~l~VS~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 18 EAAQ----ISQTLNTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp CHHH----HHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred cHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 6666 99999999999999999999999999983
No 5
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=92.51 E-value=0.048 Score=35.72 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=41.8
Q ss_pred hhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 7 GTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 7 ~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+.|.++...+.+-+. .|. -..|. ||- +- ..+++.+.||=+-.|+|++.|+++|+|....
T Consensus 14 PlY~QI~~~i~~~I~----~G~-l~pG~----~LP-se----r~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 14 PIYEQIVQKIKEQVV----KGV-LQEGE----KIL-SI----REFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp CHHHHHHHHHHHHHH----HTS-SCTTC----EEC-CH----HHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHHHHHHH----cCC-CCCCC----CCc-cH----HHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 357777777766211 122 23455 775 33 3499999999999999999999999997653
No 6
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=92.45 E-value=0.05 Score=34.90 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=27.8
Q ss_pred ccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 49 AGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 49 ~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
..+++++.||-+-.|+|++.|+++|+|....
T Consensus 37 ~~La~~~~vSr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 37 RKISTEYQINPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 3499999999999999999999999997653
No 7
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=91.70 E-value=0.097 Score=33.76 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=31.6
Q ss_pred eEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 39 KLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 39 Kli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
++. |... +++++.|+-+-.|+||+.|+++|+|....
T Consensus 42 ~lp-s~~e----La~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 42 GLL-VASK----IADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp EEE-CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCC-CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 665 5555 99999999999999999999999998765
No 8
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=91.64 E-value=0.18 Score=30.79 Aligned_cols=29 Identities=14% Similarity=-0.036 Sum_probs=27.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCe
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSI 75 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~I 75 (93)
|++- +++++.++-|-+.+.|+.|+++|+|
T Consensus 32 t~~e----La~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 32 YIQY----IASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EHHH----HHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 7777 9999999999999999999999999
No 9
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=91.56 E-value=0.11 Score=33.50 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=34.6
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee--eeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI--SAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V--s~~~~Q~IYT 88 (93)
|..- +.++++++-+-..++|+.|+++|+|+.+ ..+....+|-
T Consensus 38 ~qke----La~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~ 81 (91)
T 2dk5_A 38 WSRD----VRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 81 (91)
T ss_dssp EHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEE
Confidence 6666 8999999999999999999999999977 2335566664
No 10
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=91.26 E-value=0.094 Score=34.21 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=31.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++.+.++-+-.|+-|..|+++|+|+.+.
T Consensus 18 sv~e----LA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 18 EAKQ----LSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp EHHH----HHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred cHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 7777 99999999999999999999999999984
No 11
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=91.21 E-value=0.12 Score=33.82 Aligned_cols=59 Identities=12% Similarity=0.189 Sum_probs=39.0
Q ss_pred hhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 7 GTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 7 ~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
..|+.+...+.+.+. -|. -..|. +|= +- ..+++.+.||-+-.|+|++.|++.|+|....
T Consensus 11 ~~~~~i~~~l~~~I~----~g~-~~~G~----~lP-s~----~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 69 (126)
T 3ic7_A 11 AIYLQIADRICDDIL----LGQ-YEEEG----RIP-SV----REYASIVEVNANTVMRSYEYLQSQEVIYNKR 69 (126)
T ss_dssp -CTTHHHHHHHHHHH----TTS-SCBTS----EEC-CT----TTTTTCC-CCSGGGHHHHHHHHTTTSEEEET
T ss_pred CHHHHHHHHHHHHHH----hCC-CCCCC----cCc-CH----HHHHHHHCcCHHHHHHHHHHHHHCCcEEEEc
Confidence 346666666665221 121 13344 654 33 3499999999999999999999999997654
No 12
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=91.20 E-value=0.082 Score=31.65 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=28.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++.+.|+-+-+++.|+.|+++|+|...
T Consensus 16 s~~e----La~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 16 KTAE----IAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 5555 8999999999999999999999999865
No 13
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=91.16 E-value=0.2 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=27.0
Q ss_pred cceeeeeHHHHHHHHHHHHHcCCeeeeeec
Q 038379 52 NCLVHISGSLASRAIKDLVARGSIRMISAY 81 (93)
Q Consensus 52 ~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~ 81 (93)
++++.++-|-..+.|+.|+++|+|......
T Consensus 33 a~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 33 NAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 888999999999999999999999886543
No 14
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=90.79 E-value=0.082 Score=34.52 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=28.0
Q ss_pred ccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 49 AGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 49 ~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
..+++.+.||-+-.|+|++.|++.|+|....
T Consensus 41 ~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 41 REMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 3499999999999999999999999997754
No 15
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=90.02 E-value=0.13 Score=33.74 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=40.9
Q ss_pred hhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 7 GTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 7 ~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
..|+.+...+...+. .|. -..|. +|- +- ..+++++.||-+-.|+|++.|++.|+|....
T Consensus 11 ~~~~~i~~~l~~~I~----~g~-~~~G~----~lP-se----~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 11 PVYLQLVDRIKNEVA----TDV-LSAND----QLP-SV----RETALQEKINPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp CHHHHHHHHHHHHHH----TTS-SCTTC----EEC-CH----HHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHHHHHHH----hCC-CCCCC----cCc-CH----HHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 356666666666221 122 23344 554 33 3499999999999999999999999997654
No 16
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=89.95 E-value=0.3 Score=28.75 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=33.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++.+.++-|-.++.|+.|++.|+|.... ......|.
T Consensus 40 s~~e----la~~l~is~~tvs~~l~~L~~~glv~~~~-~~r~~~y~ 80 (99)
T 3cuo_A 40 SAGE----LTRITGLSASATSQHLARMRDEGLIDSQR-DAQRILYS 80 (99)
T ss_dssp EHHH----HHHHHCCCHHHHHHHHHHHHHTTSEEEEE-CSSCEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEe-cCCEEEEE
Confidence 6666 99999999999999999999999998764 33444554
No 17
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=89.78 E-value=0.32 Score=28.45 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=30.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
|.+- +++.+.++-+-+++.|+.|+++|+|.....
T Consensus 36 s~~e----la~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 36 RVSE----IARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 6666 899999999999999999999999988743
No 18
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=89.55 E-value=0.11 Score=34.53 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=40.8
Q ss_pred hhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 6 QGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 6 k~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
...|+.+...+...+. -|. -+.|. +|- | |..+++++.||-+-.|+||+.|++.|+|....
T Consensus 3 ~~~~~~i~~~i~~~I~----~g~-l~~G~----~LP-s----e~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 3 VPLYKQIASLIEDSIV----DGT-LSIDQ----RVP-S----TNELAAFHRINPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp CCHHHHHHHHHHHHHH----TTS-SCTTS----CBC-C----HHHHHHHTTCCHHHHHHHHHHHHTTTSEEEET
T ss_pred CcHHHHHHHHHHHHHH----hCC-CCCCC----cCc-C----HHHHHHHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 3456666666666221 122 12344 553 3 34499999999999999999999999997654
No 19
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=89.37 E-value=0.27 Score=30.34 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=30.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-+.+.++.|+++|+|....
T Consensus 49 t~~e----la~~l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 49 TQND----IAKALQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 7777 99999999999999999999999998873
No 20
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.06 E-value=0.19 Score=29.60 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=30.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++.+.|+-|-.++.|+.|+++|+|....
T Consensus 38 t~~e----la~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 38 TSEE----LADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 6677 99999999999999999999999999874
No 21
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=88.75 E-value=0.33 Score=29.61 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=29.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.++++-|-++++|+.|+++|+|....
T Consensus 54 t~~e----la~~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 54 PQNQ----LGRLTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp CHHH----HHHHTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 6666 89999999999999999999999998864
No 22
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=88.30 E-value=0.2 Score=35.75 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=28.7
Q ss_pred cccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 48 EAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 48 ~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.-+++++.||-.-.|+||+.|+++|+|....
T Consensus 36 e~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 36 ETALQEIYSSSRTTIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 44599999999999999999999999998754
No 23
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=88.29 E-value=0.34 Score=30.82 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=30.5
Q ss_pred cccee-eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 51 FNCLV-HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 51 ~~~rl-kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
+.+.+ .|+.+..++-|+.|++.|+|..... ....|.
T Consensus 48 L~~~l~gis~~~ls~~L~~Le~~GlV~r~~~--r~~~y~ 84 (111)
T 3df8_A 48 IRSSIPGISSTILSRRIKDLIDSGLVERRSG--QITTYA 84 (111)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHTTSEEEEES--SSEEEE
T ss_pred HHHHccCCCHHHHHHHHHHHHHCCCEEEeec--CcEEEE
Confidence 88999 8999999999999999999987654 445554
No 24
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=88.15 E-value=0.34 Score=29.62 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=30.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-.++.|+.|+++|+|....
T Consensus 47 ~~~e----la~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 47 HQLA----LQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 6666 99999999999999999999999998764
No 25
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=88.15 E-value=0.45 Score=29.08 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=30.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-.++.|+.|+++|+|....
T Consensus 52 t~~e----la~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 52 ESYQ----LANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp EHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 7777 99999999999999999999999998874
No 26
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=87.96 E-value=0.45 Score=29.24 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=34.7
Q ss_pred eccCCcccccceee----eeHHHHHHHHHHHHHcCCeeeeeeccceEEEEeec
Q 038379 43 TSTGNEAGFNCLVH----ISGSLASRAIKDLVARGSIRMISAYASQQIYTRVI 91 (93)
Q Consensus 43 T~s~~~~~~~~rlk----I~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYTR~~ 91 (93)
|++- +++.+. ++-|-..+.|+.|+++|+|..... .+..+|...+
T Consensus 26 t~~e----la~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~-~rr~~~~~lT 73 (123)
T 1okr_A 26 SANN----IIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD-NKIFQYYSLV 73 (123)
T ss_dssp EHHH----HHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE-TTEEEEEESS
T ss_pred CHHH----HHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec-CCeEEEEEec
Confidence 6777 888888 778999999999999999998754 4555665443
No 27
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=87.94 E-value=0.32 Score=30.02 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=29.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-.+++|+.|+++|+|....
T Consensus 52 ~~~e----la~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 52 TMAY----LANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp CHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 6666 89999999999999999999999998764
No 28
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=87.93 E-value=0.23 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=30.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.++++-|-++++|+.|+++|+|....
T Consensus 56 t~~e----la~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 56 TAPQ----LGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 7777 99999999999999999999999998874
No 29
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=87.90 E-value=0.42 Score=29.71 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=29.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-..+.|+.|+++|+|....
T Consensus 52 ~~~~----la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 52 SMVY----LANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 5566 89999999999999999999999998874
No 30
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=87.74 E-value=0.49 Score=28.70 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=33.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++.+.++-|-.++.|+.|++.|+|..... .....|.
T Consensus 36 ~~~e----la~~l~is~~tv~~~l~~L~~~gli~~~~~-gr~~~y~ 76 (114)
T 2oqg_A 36 SASS----LATRLPVSRQAIAKHLNALQACGLVESVKV-GREIRYR 76 (114)
T ss_dssp CHHH----HHHHSSSCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeeEEec-CCEEEEE
Confidence 5666 899999999999999999999999987643 4444554
No 31
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=87.74 E-value=0.28 Score=30.39 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=30.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-++++|+.|+++|+|....
T Consensus 53 ~~~e----la~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 53 NVKK----VVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp EHHH----HHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 7777 99999999999999999999999998864
No 32
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=87.52 E-value=0.26 Score=31.05 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=30.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-.++.|+.|+++|+|....
T Consensus 63 t~~e----la~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 63 SVSE----IGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHH----HHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 7777 99999999999999999999999998864
No 33
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=87.46 E-value=0.26 Score=30.67 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=30.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-+.+.++.|+++|+|....
T Consensus 53 t~~e----La~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 53 SQKE----IALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHH----HHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 7777 99999999999999999999999998763
No 34
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=87.29 E-value=0.66 Score=27.19 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=29.6
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++.+.++-|-.++.|+.|+++|+|....
T Consensus 32 ~~~e----la~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 32 PFSQ----IQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp EHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 6667 89999999999999999999999998653
No 35
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=87.26 E-value=0.42 Score=29.51 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=30.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.++++-|-.+++|+.|+++|+|....
T Consensus 45 t~~~----la~~l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 45 IQEK----IAELIKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 6777 99999999999999999999999998863
No 36
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=87.23 E-value=0.43 Score=29.16 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=29.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-.++.++.|+++|+|....
T Consensus 45 ~~~e----la~~l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 45 KQDE----LATFFHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp BHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 6666 89999999999999999999999998864
No 37
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=87.23 E-value=0.24 Score=30.41 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=30.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-.+++++.|+++|+|....
T Consensus 52 ~~~e----la~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 52 LQRD----LESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp BHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 6677 99999999999999999999999998864
No 38
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=87.22 E-value=0.16 Score=37.15 Aligned_cols=60 Identities=27% Similarity=0.208 Sum_probs=41.2
Q ss_pred hhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 6 QGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 6 k~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+..|+++...+.+-+. -|. -+.|. +|= .|..+++++.||-+-+|+||+.|+++|+|....
T Consensus 28 ~~~~~~i~~~l~~~I~----~g~-~~~g~----~lP-----se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 28 QPAYLRVAGDLRKKIV----DGS-LPPHT----RLP-----SQARIREEYGVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp CCHHHHHHHHHHHHHH----HTS-SCTTS----BCC-----CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCHHHHHHHHHHHHHH----cCC-CCCcC----CCc-----CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3456666666666111 011 22344 554 345599999999999999999999999997654
No 39
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=87.19 E-value=0.38 Score=30.31 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=28.1
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeeec
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISAY 81 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~ 81 (93)
+++.+.||-+-+|+-|+.|+++|+|+..-.-
T Consensus 30 Ia~~lgvS~~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 30 IADAAGLSIYQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCcEEecCCC
Confidence 8999999999999999999999999998533
No 40
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=87.13 E-value=0.25 Score=31.50 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=30.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-+.+.++.|+++|+|....
T Consensus 66 t~~e----La~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 66 NQES----LSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 7777 99999999999999999999999998763
No 41
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.12 E-value=0.25 Score=30.69 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=30.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.++++-|-.+++|+.|+++|+|....
T Consensus 52 ~~~~----la~~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 52 TPSE----LAAAERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp CHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHH----HHHHhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 6666 99999999999999999999999998763
No 42
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=87.00 E-value=0.29 Score=30.71 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=30.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-+.+.++.|+++|+|....
T Consensus 52 t~~e----La~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 52 NIKK----LGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHH----HHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 7888 99999999999999999999999999873
No 43
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=86.77 E-value=0.2 Score=31.12 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.1
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-.+++|+.|+++|+|....
T Consensus 53 t~~e----La~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 53 TNSE----LARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 7777 99999999999999999999999998764
No 44
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=86.76 E-value=0.28 Score=31.42 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=30.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-+.+.|+.|+++|+|....
T Consensus 69 t~~e----La~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 69 TVGQ----LATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp EHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 7777 99999999999999999999999998763
No 45
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=86.69 E-value=0.34 Score=29.29 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=28.3
Q ss_pred eccCCcccccceeeeeHHH-HHHHHHHHHHcCCee
Q 038379 43 TSTGNEAGFNCLVHISGSL-ASRAIKDLVARGSIR 76 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSL-Ar~alkdL~~kG~Ik 76 (93)
|++- +++.+.++-|- ..+.|+.|+++|+|.
T Consensus 32 t~~e----La~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 32 SLAE----IVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CHHH----HHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CHHH----HHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 6777 99999999999 999999999999999
No 46
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.68 E-value=0.27 Score=30.24 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=29.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-++++++.|+++|+|....
T Consensus 54 t~~~----la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 54 TQRE----LAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp BHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHH----HHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 6666 99999999999999999999999998864
No 47
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=86.66 E-value=0.067 Score=33.19 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=26.5
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
+++++.|+-+-.|+||+.|++.|+|...
T Consensus 41 La~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 41 IRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 9999999999999999999999999764
No 48
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=86.64 E-value=0.26 Score=33.79 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=41.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 6 QGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 6 k~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+..|+.+...+.+-+. .|. -+.|. ||= +|..+++++.||=+-.|.||+.|+++|+|....
T Consensus 6 ~~~~~~v~~~l~~~I~----~g~-l~pG~----~LP-----sE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 6 QSPAGFAEEYIIESIW----NNR-FPPGT----ILP-----AERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp CSHHHHHHHHHHHHHH----TTS-SCTTS----BCC-----CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccHHHHHHHHHHHHHH----cCC-CCCCC----CCC-----CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 3456666666665111 122 13344 553 456699999999999999999999999998654
No 49
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=86.53 E-value=0.47 Score=28.56 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=33.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++.+.|+-|-.++.|+.|++.|+|.... ......|.
T Consensus 38 ~~~e----la~~l~is~~tvs~~L~~L~~~Glv~~~~-~g~~~~y~ 78 (98)
T 3jth_A 38 SVGE----LCAKLQLSQSALSQHLAWLRRDGLVTTRK-EAQTVYYT 78 (98)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEC-CTTCCEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeEEEE-eCCEEEEE
Confidence 6666 89999999999999999999999998753 34445554
No 50
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=86.48 E-value=1 Score=28.02 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=29.0
Q ss_pred eccCCccccccee-eeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLV-HISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rl-kI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+.+- +++++ .|+-+-..+.|+.|+++|+|+...
T Consensus 29 ~~~e----La~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 29 RTSE----LKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp CHHH----HHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 4555 88899 999999999999999999998764
No 51
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=86.41 E-value=0.29 Score=30.68 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=29.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
|++- +++.+.++-|-.++.++.|+++|+|..
T Consensus 57 t~~e----La~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 57 SVAD----LTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 7777 999999999999999999999999987
No 52
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.35 E-value=0.51 Score=29.02 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=30.1
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-..+.|+.|+++|+|....
T Consensus 49 ~~~~----la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 49 RPGE----LSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 6666 99999999999999999999999998874
No 53
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=86.28 E-value=0.53 Score=29.50 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=33.6
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++.+.|+-|-.++.|+.|++.|+|+... ......|.
T Consensus 40 s~~e----La~~lgis~stvs~~L~~L~~~GlV~~~~-~gr~~~y~ 80 (108)
T 2kko_A 40 AVEA----IATATGMNLTTASANLQALKSGGLVEARR-EGTRQYYR 80 (108)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHHTSEEEEE-ETTEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeEEEE-eCCEEEEE
Confidence 6666 99999999999999999999999998764 44445554
No 54
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=86.25 E-value=0.32 Score=34.08 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=26.5
Q ss_pred ccccceee--------------eeHHHHHHHHHHHHHcCCeeee
Q 038379 49 AGFNCLVH--------------ISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 49 ~~~~~rlk--------------I~gSLAr~alkdL~~kG~Ik~V 78 (93)
..+++.+. +|++..|.||+.|++.|+|...
T Consensus 71 ~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~ 114 (150)
T 2v7f_A 71 ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV 114 (150)
T ss_dssp HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe
Confidence 34777888 9999999999999999999865
No 55
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=86.22 E-value=0.88 Score=26.78 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=33.8
Q ss_pred eccCCcccccceee----eeHHHHHHHHHHHHHcCCeeeeeeccceEEEEeec
Q 038379 43 TSTGNEAGFNCLVH----ISGSLASRAIKDLVARGSIRMISAYASQQIYTRVI 91 (93)
Q Consensus 43 T~s~~~~~~~~rlk----I~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYTR~~ 91 (93)
|..- +.+.+. ++-|-..+.|+.|+++|+|.... .....+|.-.+
T Consensus 25 t~~e----i~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~-~gr~~~y~~~~ 72 (82)
T 1p6r_A 25 NTNE----VIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK-EGRVFVYTPNI 72 (82)
T ss_dssp EHHH----HHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEESC
T ss_pred CHHH----HHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe-cCCEEEEEeec
Confidence 5666 777776 57788999999999999999875 35567886443
No 56
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=86.04 E-value=0.27 Score=32.27 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=32.3
Q ss_pred eEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 39 KLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 39 Kli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
..+ |++. +++++.++-+=..++|+.|+++|+|.....
T Consensus 50 ~~p-s~~~----LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 50 LFP-TPAE----LAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SSC-CHHH----HHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCC-CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 344 8888 999999999999999999999999988643
No 57
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=86.00 E-value=0.27 Score=30.51 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=30.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-++++++.|+++|+|....
T Consensus 56 ~~~~----la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 56 TVKK----MGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp EHHH----HHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CHHH----HHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 7777 99999999999999999999999998763
No 58
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=85.96 E-value=0.32 Score=29.74 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=30.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-+.+.++.|+++|+|....
T Consensus 43 t~~e----la~~l~~~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 43 TISD----IMEELKISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 7777 99999999999999999999999998863
No 59
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=85.90 E-value=0.24 Score=30.86 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=28.6
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|++- +++++.++-|-.++.|+.|+++|+|...
T Consensus 56 t~~e----la~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 56 SVQK----ISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 6666 8999999999999999999999999876
No 60
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=85.88 E-value=0.22 Score=35.59 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=40.4
Q ss_pred hhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 7 GTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 7 ~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
..|+++...+.+.+. -|. -+.|. +|= .|..+++++.||-+-.|+||+.|+++|+|...
T Consensus 10 ~~~~~i~~~l~~~I~----~g~-~~~g~----~lP-----se~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 10 PIYYQIMEQLKTQIK----NGE-LQPDM----PLP-----SEREYAEQFGISRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp CHHHHHHHHHHHHHH----HTS-SCTTC----BCC-----CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHHH----hCC-CCCcC----CCc-----CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 357777777766211 122 12344 543 23459999999999999999999999999764
No 61
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=85.74 E-value=0.51 Score=27.80 Aligned_cols=38 Identities=8% Similarity=0.122 Sum_probs=31.5
Q ss_pred cccee-----eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 51 FNCLV-----HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 51 ~~~rl-----kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
+.+.+ .|+-+=..+.|+.|++.|+|..+........|.
T Consensus 39 l~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 39 LYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred HHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 77788 899999999999999999999886545555563
No 62
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=85.71 E-value=0.76 Score=28.45 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=31.4
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEEe
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYTR 89 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYTR 89 (93)
+++.++|+-|-.++.|+.|++.|+|.... ......||-
T Consensus 51 la~~l~is~stvsr~l~~Le~~Glv~~~~-~~r~~~~~~ 88 (119)
T 2lkp_A 51 LAEAIGMEQSAVSHQLRVLRNLGLVVGDR-AGRSIVYSL 88 (119)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCSEEEEE-ETTEEEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEEe-cCCEEEEEE
Confidence 89999999999999999999999997653 444555653
No 63
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=85.69 E-value=0.28 Score=30.59 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=30.1
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-+++.++.|+++|+|....
T Consensus 47 t~~e----La~~l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 47 TQKH----IGEKWSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEeecc
Confidence 7777 99999999999999999999999998763
No 64
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.49 E-value=0.49 Score=29.96 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=30.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-++++|+.|+++|+|....
T Consensus 60 t~~e----la~~l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 60 KMKE----IAEFLSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp CHHH----HHHHTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 6666 99999999999999999999999998864
No 65
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=85.35 E-value=0.61 Score=30.04 Aligned_cols=33 Identities=15% Similarity=0.067 Sum_probs=27.6
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-..+.|+.|+++|+|....
T Consensus 64 t~~e----La~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 64 ATLQ----IADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp EHHH----HHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 7777 99999999999999999999999998874
No 66
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=85.34 E-value=0.37 Score=30.10 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=30.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-++++|+.|+++|+|....
T Consensus 53 t~~e----la~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 53 KVSE----IAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp EHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 7777 99999999999999999999999998864
No 67
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=85.33 E-value=0.34 Score=34.36 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=28.1
Q ss_pred cccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 48 EAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 48 ~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|..+++++.||-+-.|+||+.|+++|+|...
T Consensus 32 e~~La~~~~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 32 LETLMAQFEVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 4559999999999999999999999999765
No 68
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=85.30 E-value=0.39 Score=30.46 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-.++.|+.|+++|+|....
T Consensus 68 t~~e----la~~l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 68 PIGT----LGIFAVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCChhHHHHHHHHHHHCCCEEecC
Confidence 7777 99999999999999999999999998863
No 69
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=85.29 E-value=0.53 Score=29.22 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=29.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-.++.|+.|+++|+|....
T Consensus 58 t~~e----la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 58 TVGE----LSNKMYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 6666 99999999999999999999999998864
No 70
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=85.25 E-value=0.31 Score=29.94 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=29.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++. +++.+.++-|-.++.++.|+++|+|....
T Consensus 50 ~~~~----la~~l~~~~~tvs~~l~~L~~~gli~r~~ 82 (138)
T 1jgs_A 50 TPVE----LKKVLSVDLGALTRMLDRLVCKGWVERLP 82 (138)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCChHHHHHHHHHHHHCCCEEecC
Confidence 6666 89999999999999999999999998864
No 71
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=85.23 E-value=0.27 Score=30.98 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=28.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-+.+.++.|+++|+|....
T Consensus 56 t~~e----La~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 56 NQRG----VAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp CSHH----HHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CHHH----HHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 6666 99999999999999999999999998753
No 72
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=85.06 E-value=0.21 Score=31.18 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.1
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-.++.++.|+++|+|....
T Consensus 53 t~~e----La~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 53 NLQD----LGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp CHHH----HHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred CHHH----HHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 6677 99999999999999999999999998763
No 73
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=85.02 E-value=0.26 Score=32.18 Aligned_cols=34 Identities=12% Similarity=0.293 Sum_probs=28.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
|++- +++++.++-|-..+.|+.|+++|+|+..+.
T Consensus 54 t~~e----La~~l~~~~~tvsr~v~~Le~~glVr~~~~ 87 (148)
T 4fx0_A 54 TMSE----LAARIGVERTTLTRNLEVMRRDGLVRVMAG 87 (148)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSBC----
T ss_pred CHHH----HHHHHCCChhhHHHHHHHHHHCCCEEeeCC
Confidence 7777 999999999999999999999999976543
No 74
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=84.89 E-value=0.29 Score=31.00 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=29.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-+++.++.|+++|+|....
T Consensus 57 ~~~e----La~~l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 57 TLNS----IGRHLDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 7777 99999999999999999999999998773
No 75
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=84.60 E-value=0.34 Score=30.45 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=29.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.|+-|-.+++|+.|+++|+|....
T Consensus 33 s~~e----la~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 33 KINR----IAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHH----HHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 6666 99999999999999999999999998643
No 76
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=84.55 E-value=0.23 Score=35.49 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=5.2
Q ss_pred cccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 48 EAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 48 ~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|..+++++.+|-+-.|+||+.|+++|+|....
T Consensus 43 e~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 74 (247)
T 2ra5_A 43 EIELAARLGLSRPTVRQAIQSLVDKGLLVRRR 74 (247)
T ss_dssp -------------------------CEEEEEC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 34499999999999999999999999997653
No 77
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=84.47 E-value=0.38 Score=31.48 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=30.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-+.+.|+.|+++|+|....
T Consensus 70 t~~e----La~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 70 SQIQ----LAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp EHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CHHH----HHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 7777 99999999999999999999999998874
No 78
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=84.18 E-value=0.38 Score=34.50 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=42.4
Q ss_pred hhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 6 QGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 6 k~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
...|+++...+.+.+ . | -..|. +|= .|.-+++++.+|-+-.|+||+.|+++|+|..
T Consensus 13 ~~~y~~i~~~l~~~I---~--~--~~~g~----~lP-----se~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 13 ILKHQVVRAELDRML---D--G--MRIGD----PFP-----AEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp -CHHHHHHHHHHHHH---H--H--CCTTC----BCC-----CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHH---h--C--CCCCC----cCc-----CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 356778887777722 1 3 44555 654 3445999999999999999999999999987
No 79
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=84.05 E-value=1.1 Score=28.61 Aligned_cols=32 Identities=6% Similarity=0.119 Sum_probs=29.1
Q ss_pred eccCCcccccceeeeeHH-HHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGS-LASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gS-LAr~alkdL~~kG~Ik~V 78 (93)
|... +++.+.|+.+ -+|+.|..|++.|+|...
T Consensus 27 ta~e----iA~~Lgit~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 27 SALN----LAKNIGLTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp EHHH----HHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHH----HHHHcCCCcHHHHHHHHHHHHHCCCEEec
Confidence 6666 9999999999 999999999999999854
No 80
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=83.87 E-value=0.24 Score=31.25 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=29.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
|++- +++.+.++-|-.++.++.|+++|+|..
T Consensus 53 t~~e----La~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 53 TVGQ----ITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp CHHH----HHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 7777 999999999999999999999999986
No 81
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=83.85 E-value=1.3 Score=27.85 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=33.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++.+.|+-|-.++-|+.|++.|+|..-.. .....|.
T Consensus 33 ~~~e----La~~l~is~~tvs~hL~~L~~~GlV~~~~~-gr~~~y~ 73 (118)
T 3f6o_A 33 TVSE----LAKPFDMALPSFMKHIHFLEDSGWIRTHKQ-GRVRTCA 73 (118)
T ss_dssp EHHH----HHTTCCSCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred CHHH----HHHHhCcCHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 6666 899999999999999999999999987543 4445554
No 82
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=83.81 E-value=0.86 Score=29.32 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=29.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.++-|-+.++|+.|+++|+|....
T Consensus 44 t~~e----La~~l~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 44 DTDA----LSKSLKLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp EHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 6666 99999999999999999999999998763
No 83
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=83.71 E-value=0.24 Score=31.09 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=23.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-..+.++.|+++|+|....
T Consensus 59 t~~e----La~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 59 IQKD----LAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp CHHH----HHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CHHH----HHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 6666 99999999999999999999999998763
No 84
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=83.64 E-value=0.77 Score=29.75 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=30.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-+.+.|+.|+++|+|....
T Consensus 61 t~~e----La~~l~is~~tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 61 NLAT----LATLLGVQPSATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp EHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHhCCCHHHHHHHHHHHHHCCCEEecc
Confidence 7777 99999999999999999999999998763
No 85
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=83.64 E-value=0.35 Score=30.54 Aligned_cols=32 Identities=9% Similarity=-0.037 Sum_probs=29.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|++- +++.+.++-|-..+.|+.|+++|+|...
T Consensus 55 t~~e----La~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 55 YLKD----IINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp EHHH----HHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 7777 9999999999999999999999999875
No 86
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=83.60 E-value=0.76 Score=28.29 Aligned_cols=28 Identities=11% Similarity=0.092 Sum_probs=26.8
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
+++.+.|+-|-.+++|+.|++.|+|...
T Consensus 39 La~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 39 IANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999876
No 87
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=83.52 E-value=0.38 Score=30.40 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=29.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++.+.|+-|-.+++|+.|+++|+|...
T Consensus 24 ~~~e----la~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 24 RVSD----IAEALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHH----HHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 6666 9999999999999999999999999765
No 88
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=83.48 E-value=0.89 Score=28.54 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=29.6
Q ss_pred eccCCccccccee-eeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLV-HISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rl-kI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++.+ .|+-+-..+.|+.|+++|+|....
T Consensus 37 ~~~e----La~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 37 RNGE----LMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp CHHH----HHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHH----HHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 5566 89999 999999999999999999998764
No 89
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=83.48 E-value=0.65 Score=31.10 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-+++.|+.|+++|+|....
T Consensus 59 t~~e----La~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 59 TLNN----IARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 6677 99999999999999999999999999874
No 90
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=83.40 E-value=0.31 Score=29.73 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=29.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-.++.|+.|+++|+|....
T Consensus 49 ~~~e----la~~l~~~~~tvs~~l~~L~~~gli~r~~ 81 (139)
T 3bja_A 49 SMSK----LIENMGCVPSNMTTMIQRMKRDGYVMTEK 81 (139)
T ss_dssp EHHH----HHHHCSSCCTTHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCChhHHHHHHHHHHHCCCeeecc
Confidence 6777 99999999999999999999999998763
No 91
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=83.28 E-value=0.53 Score=30.42 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=30.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-..+.++.|+++|+|....
T Consensus 53 t~~e----La~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 53 PMSK----IGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 7777 99999999999999999999999998874
No 92
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=83.20 E-value=1.2 Score=29.46 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=27.1
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+++.+.|+-+..++.|+.|+++|+|....
T Consensus 43 La~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 43 FQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 88999999999999999999999998864
No 93
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=83.08 E-value=0.67 Score=31.36 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=35.5
Q ss_pred ccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 30 SQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 30 ~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
.++|. ..+ ||.. +++++.++.+-..+.|+.|+++|+|..-.
T Consensus 45 ~~~g~----~~p-s~~~----LA~~~~~s~~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 45 LEKGS----YFP-TPNQ----LQEGMSISVEECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp HTTTC----CSC-CHHH----HHTTSSSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred HhcCC----CCC-CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45666 555 8888 99999999999999999999999999853
No 94
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=82.88 E-value=0.46 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|++- +++.+.++-+-+.+.|+.|+++|+|...
T Consensus 59 t~~e----la~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 59 MITR----LAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp CHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 6666 9999999999999999999999999876
No 95
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=82.87 E-value=0.7 Score=29.42 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=24.9
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
|+.++.|+--.--.+|+.|++||+|+.
T Consensus 31 ~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 31 FSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 788889999999999999999999986
No 96
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=82.62 E-value=0.98 Score=27.88 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=33.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++.+.|+-|-.++.|+.|++.|+|.... ......|+
T Consensus 41 ~~~e----la~~l~is~stvs~~L~~L~~~Glv~~~~-~gr~~~y~ 81 (106)
T 1r1u_A 41 SVGH----ISHQLNLSQSNVSHQLKLLKSVHLVKAKR-QGQSMIYS 81 (106)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEE-ETTEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeEEEE-eCCEEEEE
Confidence 5555 89999999999999999999999998764 33444454
No 97
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=82.57 E-value=0.43 Score=32.66 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=28.5
Q ss_pred cccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 48 EAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 48 ~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|..+++++.||=+-.|.||+.|++.|+|....
T Consensus 38 e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 69 (218)
T 3sxy_A 38 VRELSEKLGISFTPVRDALLQLATEGLVKVVP 69 (218)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTSEEEET
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 44499999999999999999999999997653
No 98
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=82.34 E-value=0.4 Score=30.28 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=28.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|++- +++.+.++-|-.+++|+.|+++|+|...
T Consensus 65 t~~e----la~~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 65 SASE----VSDRTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEeee
Confidence 6666 8999999999999999999999999875
No 99
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=82.30 E-value=1.5 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=29.0
Q ss_pred eccCCcccccceee-eeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVH-ISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlk-I~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+.+- +++.+. |+-+-.++.|+.|+++|+|....
T Consensus 40 ~~~e----L~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 40 RYGE----LKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp EHHH----HHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 5566 889996 99999999999999999998764
No 100
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=82.20 E-value=0.35 Score=31.02 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=30.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-..+.|+.|+++|+|....
T Consensus 62 t~~e----La~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 62 SNAK----LAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CHHH----HHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 6677 99999999999999999999999999874
No 101
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=81.74 E-value=1.5 Score=28.31 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=31.5
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEEe
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYTR 89 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYTR 89 (93)
+++.+.|+-|-.++.|+.|++.|+|..-. ......|+-
T Consensus 65 la~~lgis~stvs~~L~~Le~~Glv~~~~-~gr~~~y~l 102 (122)
T 1r1t_A 65 LAQAIGVSESAVSHQLRSLRNLRLVSYRK-QGRHVYYQL 102 (122)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEEEE-eCCEEEEEE
Confidence 89999999999999999999999998753 345555653
No 102
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=81.39 E-value=0.55 Score=30.66 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=29.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.|+-|-..+.++.|+++|+|....
T Consensus 48 ~~~e----La~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 48 SQIQ----LAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cHHH----HHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 5555 89999999999999999999999998763
No 103
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=81.33 E-value=0.43 Score=33.14 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=27.8
Q ss_pred cccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 48 EAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 48 ~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
|..+++++.||=+-.|.||+.|++.|+|..
T Consensus 31 E~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 31 ERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 445999999999999999999999999986
No 104
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=81.31 E-value=0.58 Score=30.08 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=28.6
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|++- +++.+.|+-|-.+++|+.|+++|+|...
T Consensus 56 ~~~~----la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 56 RQVD----MAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CHHH----HHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 5555 9999999999999999999999998764
No 105
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=81.27 E-value=1.3 Score=28.02 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=32.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++.+.|+-|-.++.|+.|++.|+|.... ......|+
T Consensus 36 ~~~e----La~~lgis~stvs~~L~~L~~~GlV~~~~-~gr~~~y~ 76 (118)
T 2jsc_A 36 YPGQ----LAAHLGLTRSNVSNHLSCLRGCGLVVATY-EGRQVRYA 76 (118)
T ss_dssp STTT----HHHHHSSCHHHHHHHHHHHTTTTSEEEEE-CSSSEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCceEEEE-ECCEEEEE
Confidence 5555 99999999999999999999999998753 34444554
No 106
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=80.89 E-value=0.3 Score=30.85 Aligned_cols=32 Identities=9% Similarity=0.175 Sum_probs=29.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|++- +++.+.++-|-+.+.++.|+++|+|...
T Consensus 64 ~~~e----la~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 64 SMGK----LSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp EHHH----HHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CHHH----HHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 7777 9999999999999999999999999876
No 107
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=80.58 E-value=0.63 Score=32.94 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=28.5
Q ss_pred cccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 48 EAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 48 ~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|..+++++.||-+-.|+||+.|++.|+|....
T Consensus 52 e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 52 QQELATLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34499999999999999999999999998754
No 108
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=80.45 E-value=0.66 Score=32.66 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=28.7
Q ss_pred cccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 48 EAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 48 ~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|..+++++.||=+-.|.||+.|++.|+|....
T Consensus 54 e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 85 (239)
T 2hs5_A 54 EPDICAALDVSRNTVREAFQILIEDRLVAHEL 85 (239)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 44499999999999999999999999998654
No 109
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=80.11 E-value=0.64 Score=31.89 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=29.1
Q ss_pred cccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 48 EAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 48 ~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|..+++++.||=+-.|.||+.|++.|+|....
T Consensus 42 E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~ 73 (222)
T 3ihu_A 42 ETDLVAHFGVGRNSVREALQRLAAEGIVDLQR 73 (222)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 55699999999999999999999999998754
No 110
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=80.09 E-value=0.99 Score=28.81 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=31.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++.+.|+-|-.++-|+.|++.|+|.... ......|+
T Consensus 58 s~~e----La~~l~is~stvs~~L~~L~~~Glv~~~~-~gr~~~y~ 98 (122)
T 1u2w_A 58 CVCD----IANILGVTIANASHHLRTLYKQGVVNFRK-EGKLALYS 98 (122)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEC-----CCEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeEEEE-ECCEEEEE
Confidence 5666 89999999999999999999999998753 33445565
No 111
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=79.79 E-value=1.2 Score=31.94 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.0
Q ss_pred eeeeHHHHHHHHHHHHHcCCeeee
Q 038379 55 VHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 55 lkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
.+=+||++|.+|+.||+-|+|...
T Consensus 94 ~~asg~iiR~~LQqLE~~g~vek~ 117 (144)
T 3u5c_T 94 IDASGSINRKVLQALEKIGIVEIS 117 (144)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEECC
T ss_pred cccCcHHHHHHHHHHHHCCCeeec
Confidence 456899999999999999999764
No 112
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=79.53 E-value=2.3 Score=27.38 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=30.6
Q ss_pred ccceee----eeHHHHHHHHHHHHHcCCeeeeeeccceEEEEeec
Q 038379 51 FNCLVH----ISGSLASRAIKDLVARGSIRMISAYASQQIYTRVI 91 (93)
Q Consensus 51 ~~~rlk----I~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYTR~~ 91 (93)
+.+++. ++-|=..+.|+.|+++|+|+... ..+..+|+-.+
T Consensus 55 L~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~-~gR~~~Y~p~i 98 (99)
T 2k4b_A 55 IYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK-EGRKFVYRPLM 98 (99)
T ss_dssp HHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE-ETTEEEEECCC
T ss_pred HHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe-CCCEEEEEEee
Confidence 677776 45677889999999999999874 45667887554
No 113
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=79.49 E-value=0.57 Score=29.65 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=26.3
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
+++++.++-+-.++.|+.|+++|+|+..
T Consensus 24 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 24 IAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 8999999999999999999999999754
No 114
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=79.44 E-value=0.26 Score=32.76 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=26.4
Q ss_pred cccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 50 GFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 50 ~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
.+++++.++-+-.|++|+.|++.|+|+.
T Consensus 32 eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 32 ELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp GGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3999999999999999999999999985
No 115
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=79.38 E-value=1.2 Score=28.77 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=28.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-+++.|+.|+++|+|+..
T Consensus 21 s~~e----la~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 21 SMRE----LGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 5555 9999999999999999999999999864
No 116
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=79.33 E-value=1.6 Score=30.34 Aligned_cols=32 Identities=38% Similarity=0.349 Sum_probs=29.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+. .+++++|+-|-.++.|+.|++.|++..-
T Consensus 29 s~s~----aA~~L~isq~avSr~I~~LE~~~L~~R~ 60 (230)
T 3cta_A 29 TSSK----LADMLGISQQSASRIIIDLEKNGYITRT 60 (230)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 6677 8999999999999999999999999775
No 117
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=78.96 E-value=1.2 Score=28.75 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=29.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.++-|-+++.|+.|+++|+|+...
T Consensus 23 s~~e----la~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 23 TLSE----LATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 5556 89999999999999999999999997653
No 118
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=78.64 E-value=0.99 Score=28.44 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=30.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
|..- ++.++.|+=+-.+++|..|+++|+|+.+..
T Consensus 29 t~~e----LA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~ 62 (81)
T 1qbj_A 29 TAHD----LSGKLGTPKKEINRVLYSLAKKGKLQKEAG 62 (81)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEESS
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEecCC
Confidence 5555 999999999999999999999999998753
No 119
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=78.63 E-value=1.1 Score=28.86 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=29.1
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.++-+-+++.|+.|+++|+|+.+.
T Consensus 25 s~~e----la~~lg~s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 25 TYRE----LADILNTTRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp CHHH----HHHHTTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 5555 89999999999999999999999998653
No 120
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.52 E-value=1.3 Score=31.89 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.7
Q ss_pred eeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 54 LVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 54 rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
-.+=+||++|.+|+.||+-|+|...
T Consensus 95 ~~~asg~iiR~~LQqLE~~g~Vek~ 119 (146)
T 3iz6_S 95 FCKSSGAISRNILQQLQKMGIIDVD 119 (146)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred ccCCCcHHHHHHHHHHHHCCCeEec
Confidence 3466899999999999999999865
No 121
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=78.25 E-value=1.3 Score=26.77 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=29.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++.+.|+-|-.++.|+.|++.|+|....
T Consensus 45 ~~~e----La~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 45 SEEE----IMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 5555 89999999999999999999999998654
No 122
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=77.89 E-value=1.7 Score=30.38 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=34.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee--eeccc--eEEEEe
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI--SAYAS--QQIYTR 89 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V--s~~~~--Q~IYTR 89 (93)
|.+- +++++.++-|-.++-|+.|++.|+|+.. .+... +..|.+
T Consensus 35 s~~e----LA~~lglS~stv~~~l~~Le~~GlI~~~~~~~~~~~~~~~~g~ 81 (192)
T 1uly_A 35 TISQ----LSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGR 81 (192)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEeccccccchhhhcCc
Confidence 6666 9999999999999999999999999987 23333 555654
No 123
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=77.74 E-value=1 Score=27.33 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=32.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++.+.|+-|-.++.|+.|++.|+|..-. ......|.
T Consensus 38 ~~~e----la~~l~is~~tvs~~L~~L~~~Glv~~~~-~g~~~~y~ 78 (102)
T 3pqk_A 38 SVGE----LEQQIGIGQPTLSQQLGVLRESGIVETRR-NIKQIFYR 78 (102)
T ss_dssp CHHH----HHHHHTCCTTHHHHHHHHHHHTTSEEEEC-SSSCCEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeEEEE-eCCEEEEE
Confidence 5556 88999999999999999999999998643 33444554
No 124
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=77.53 E-value=1.7 Score=31.61 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.6
Q ss_pred eeeeHHHHHHHHHHHHHcCCeee
Q 038379 55 VHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 55 lkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
.+=+||++|.+|+.||+-|+|..
T Consensus 97 ~~asg~iiR~~LQqLE~~g~Vek 119 (155)
T 2xzm_T 97 QACHGKILRWALKSLEDLKIIRK 119 (155)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcHHHHHHHHHHHHCCCEee
Confidence 34579999999999999999987
No 125
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=77.11 E-value=1.3 Score=28.76 Aligned_cols=33 Identities=9% Similarity=0.030 Sum_probs=29.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.++-|-+++.|+.|+++|+|+...
T Consensus 24 s~~e----la~~lg~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 24 AYAE----LAKQFGVSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHcCCcceEE
Confidence 5555 89999999999999999999999998753
No 126
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=76.72 E-value=1.4 Score=33.55 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=33.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|... +.+.+.++-+-|+++|++|++.|+|+.+..- +..+|.
T Consensus 313 t~~~----~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~g-R~~~y~ 353 (373)
T 2qc0_A 313 RIQN----LVESGLAKRQTASVYLKQLCDIGVLEEVQSG-KEKLFV 353 (373)
T ss_dssp EHHH----HHHTSSSCHHHHHHHHHHHHHTTSCEEC--C-CSCEEE
T ss_pred cHHH----HHHHhCCCHHHHHHHHHHHHHCCcEEEecCC-CceEEe
Confidence 6666 8899999999999999999999999998543 335664
No 127
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=76.56 E-value=0.97 Score=29.36 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=31.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeec
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAY 81 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~ 81 (93)
|..- ++.++.|+-+-+++-|..|++.|+|......
T Consensus 32 sa~e----LAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~ 66 (82)
T 1oyi_A 32 TAAQ----LTRQLNMEKREVNKALYDLQRSAMVYSSDDI 66 (82)
T ss_dssp EHHH----HHHHSSSCHHHHHHHHHHHHHHTSSEECSSS
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEeCCCC
Confidence 6677 9999999999999999999999999887544
No 128
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=76.54 E-value=0.89 Score=31.87 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=29.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.++-|-++++|+.|+++|+|....
T Consensus 22 ~~~~----lA~~l~vs~~tvs~~l~~Le~~GlV~r~~ 54 (214)
T 3hrs_A 22 TNKE----IAQLMQVSPPAVTEMMKKLLAEELLIKDK 54 (214)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHH----HHHHHCCChhHHHHHHHHHHHCCCEEEec
Confidence 6666 99999999999999999999999997753
No 129
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=76.46 E-value=1.1 Score=27.46 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=31.1
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
|..- +++++.|+-+-.++.|..|+++|+|+.+..
T Consensus 33 t~~e----LA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~ 66 (77)
T 1qgp_A 33 TAHD----LSGKLGTPKKEINRVLYSLAKKGKLQKEAG 66 (77)
T ss_dssp EHHH----HHHHHCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEecCC
Confidence 7777 999999999999999999999999998853
No 130
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=76.37 E-value=1.3 Score=30.55 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=30.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-..+.|+.|+++|+|....
T Consensus 64 t~~e----La~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 64 SISE----IAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp EHHH----HHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 7777 99999999999999999999999998874
No 131
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=76.16 E-value=1.6 Score=28.60 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=28.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-+++-|+.|+++|+|+..
T Consensus 26 s~~e----la~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 26 TNVE----LSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 5555 8999999999999999999999999865
No 132
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=75.49 E-value=1.1 Score=28.82 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=26.5
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
+++++.++-|-.++.|+.|+++|+|+..
T Consensus 23 la~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 23 IAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 8999999999999999999999999864
No 133
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=75.46 E-value=1.1 Score=31.31 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=27.1
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+++++.++-|-.+++|+.|+++|+|....
T Consensus 30 La~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 30 IAERLDQSGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 89999999999999999999999998754
No 134
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=75.38 E-value=2.3 Score=27.87 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=29.0
Q ss_pred eccCCccccccee-eeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLV-HISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rl-kI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +.+.+ .|+-+..++.|+.|+++|+|....
T Consensus 50 ~~~e----La~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 50 RFSD----LRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp EHHH----HHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHH----HHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 5666 88999 599999999999999999998764
No 135
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=75.26 E-value=1.1 Score=28.28 Aligned_cols=32 Identities=28% Similarity=0.171 Sum_probs=29.8
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
+++. ++..++++=+.+++-++.|+++|+|...
T Consensus 22 ~~t~----La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 22 PKTR----IMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHH----HHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 7777 8999999999999999999999999876
No 136
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=74.81 E-value=3.2 Score=27.90 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=26.5
Q ss_pred cccee-eeeHHHHHHHHHHHHHcCCeeeee
Q 038379 51 FNCLV-HISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 51 ~~~rl-kI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+.+.+ .|+-+..++.|++|++.|+|....
T Consensus 45 L~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 45 FRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 77888 999999999999999999998764
No 137
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.31 E-value=1.2 Score=29.38 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=26.3
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+..+.++.-+...++|+.|+++|+|+.|.
T Consensus 59 L~~~tnL~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 59 VRYKSNLPLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHhCCCHHHHHHHHHHHHhCCCEEEec
Confidence 67788888999999999999999999993
No 138
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=73.62 E-value=2.9 Score=25.59 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=32.0
Q ss_pred eccCCcccccceee----eeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVH----ISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlk----I~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|++- +++++. ++-|=..+.|+.|+++|+|..... .+..+|.
T Consensus 26 t~~e----l~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~-~r~~~~~ 70 (126)
T 1sd4_A 26 SANE----IVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS-ENIYFYS 70 (126)
T ss_dssp EHHH----HHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred CHHH----HHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC-CCeEEEE
Confidence 6666 788886 578888999999999999998764 3445564
No 139
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=72.89 E-value=2.3 Score=26.96 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=29.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|... +++++.|+-+..+++++.|++.|+|....
T Consensus 28 s~~e----la~~~~i~~~~v~~il~~L~~~Glv~~~~ 60 (129)
T 2y75_A 28 SLKS----IAQTNNLSEHYLEQLVSPLRNAGLVKSIR 60 (129)
T ss_dssp CHHH----HHHHTTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCceEecC
Confidence 5556 99999999999999999999999997653
No 140
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=72.37 E-value=2.2 Score=28.89 Aligned_cols=32 Identities=25% Similarity=0.191 Sum_probs=28.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-+++.|+.|+++|+|+..
T Consensus 33 s~~e----LA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 33 TISE----LSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 5556 9999999999999999999999999865
No 141
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=72.15 E-value=1.3 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.6
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-.++-|+.|+++|+|+..
T Consensus 23 s~~e----la~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 23 PLRE----ISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CHHH----HHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 5555 8999999999999999999999999864
No 142
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=71.93 E-value=1.9 Score=30.22 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=26.5
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
+++++.++.|-.+++|+.|+++|+|...
T Consensus 30 la~~l~vs~~tvs~~l~~Le~~GlV~r~ 57 (226)
T 2qq9_A 30 IAERLEQSGPTVSQTVARMERDGLVVVA 57 (226)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 8999999999999999999999999774
No 143
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=71.86 E-value=1.7 Score=25.71 Aligned_cols=31 Identities=3% Similarity=-0.016 Sum_probs=28.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
|.+- +++.+.++-+-..+.|+.|++.|+|..
T Consensus 27 s~~e----LA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 27 AIFQ----LVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp EHHH----HHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 6666 999999999999999999999999754
No 144
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=71.70 E-value=6.9 Score=28.60 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=33.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccc-----eEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYAS-----QQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~-----Q~IYT 88 (93)
|.+- +++.+.++-|-.++.|+.|++.|+|........ ...|.
T Consensus 27 s~~E----La~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~ 73 (232)
T 2qlz_A 27 YFSL----LSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYK 73 (232)
T ss_dssp CSSS----SCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEE
Confidence 5556 899999999999999999999999998544444 55565
No 145
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=71.52 E-value=3.8 Score=27.60 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=34.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEEe
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYTR 89 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYTR 89 (93)
|.+- +++.+.++-|-.++-|+.|++.|+|.... .....+|.-
T Consensus 73 t~~e----La~~lgls~stvs~hL~~L~~aGlV~~~~-~Gr~~~y~l 114 (151)
T 3f6v_A 73 TVNN----LAAHFPASRSAISQHLRVLTEAGLVTPRK-DGRFRYYRL 114 (151)
T ss_dssp EHHH----HHTTSSSCHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEe-cCCEEEEEE
Confidence 6666 89999999999999999999999998753 445556653
No 146
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=70.61 E-value=3.4 Score=26.43 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.6
Q ss_pred eEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 39 KLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 39 Kli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
.+-+|..- +++.+.++=+-.+|++++|.++|+|+.
T Consensus 165 ~~~~t~~~----iA~~lg~sr~tvsR~l~~L~~~g~I~~ 199 (210)
T 3ryp_A 165 QIKITRQE----IGQIVGCSRETVGRILKMLEDQNLISA 199 (210)
T ss_dssp EEECCHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred EeccCHHH----HHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 33345555 999999999999999999999999974
No 147
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=70.42 E-value=2.2 Score=31.73 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=30.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.++-|-..+.|+.|+++|+|+...
T Consensus 422 ~~~~----l~~~~~~~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 422 SSKE----IAKCSEFKPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp EHHH----HHHSSCCCHHHHHHHHHHHHTTTTSCCEE
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 7777 99999999999999999999999998874
No 148
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=70.26 E-value=7.3 Score=24.41 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=23.8
Q ss_pred cceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 52 NCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 52 ~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
.+.+.|+-+--..+|+.|+++|+|....
T Consensus 33 ~~~~~i~~~tly~~L~~Le~~GlI~~~~ 60 (108)
T 3l7w_A 33 KLIASIKESTLYPILKKLEKAGYLSTYT 60 (108)
T ss_dssp TTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCCcChHHHHHHHHHHCCCeEEEe
Confidence 3456889999999999999999998764
No 149
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=69.97 E-value=1.7 Score=28.84 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=26.5
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
+++++.++-+-.++-|+.|+++|+|+.+
T Consensus 23 la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 23 LAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 8999999999999999999999999864
No 150
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=69.76 E-value=3.6 Score=26.70 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=29.4
Q ss_pred eEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 39 KLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 39 Kli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
.+=+|..- +++.+.++=+-.+|+|++|.++|+|+.
T Consensus 185 ~~~lt~~~----lA~~lg~sr~tvsR~l~~L~~~g~I~~ 219 (230)
T 3iwz_A 185 QLRVSRQE----LARLVGCSREMAGRVLKKLQADGLLHA 219 (230)
T ss_dssp EEECCHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred ecCCCHHH----HHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 33345555 999999999999999999999999975
No 151
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=68.31 E-value=2.4 Score=28.11 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=30.3
Q ss_pred EeccCCccccccee--eeeHHHHHHHHHHHHHcCCeeee
Q 038379 42 FTSTGNEAGFNCLV--HISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 42 ~T~s~~~~~~~~rl--kI~gSLAr~alkdL~~kG~Ik~V 78 (93)
.|++. +++.+ .++-+-.++-|+.|++.|+|...
T Consensus 28 ~s~~e----LA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 28 GSPKE----LEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp BCHHH----HHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHH----HHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 38888 99999 99999999999999999999875
No 152
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=68.27 E-value=2.9 Score=32.37 Aligned_cols=41 Identities=12% Similarity=0.090 Sum_probs=31.5
Q ss_pred EeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEE
Q 038379 42 FTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIY 87 (93)
Q Consensus 42 ~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IY 87 (93)
+|... +.+...++-.-|++.|++|++.|+++.+..-+ ..+|
T Consensus 312 ~t~~~----~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~gR-~~~y 352 (373)
T 3eqx_A 312 CRIQN----LVESGLAKRQTASVYLKQLCDIGVLEEVQSGK-EKLF 352 (373)
T ss_dssp EEHHH----HHHTSSSCHHHHHHHHHHHHHTTSCEEC--CC-SCEE
T ss_pred ccHHH----HHHHhCcCHHHHHHHHHHHHHCCcEEEeCCCC-ceEe
Confidence 36666 78888999899999999999999999985433 3445
No 153
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=67.68 E-value=3.6 Score=26.37 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=30.9
Q ss_pred eccCCcccccceee----eeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVH----ISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlk----I~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +.+++. ++-|=..+.|+.|+++|+|..... ....+|.
T Consensus 26 t~~e----l~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~-~r~~~~~ 70 (138)
T 2g9w_A 26 TVRQ----VHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRD-DRAHRYA 70 (138)
T ss_dssp EHHH----HHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred CHHH----HHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEec-CCeEEEE
Confidence 6666 777776 788999999999999999998754 3445554
No 154
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=66.74 E-value=3.1 Score=30.34 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=29.6
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCee-eee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIR-MIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik-~Vs 79 (93)
|..- +++++.||-+-.||-|++|+++|+++ .+.
T Consensus 23 ~~~e----la~~l~vS~~tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 23 TQAQ----IARELGIYRTTISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp CHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCcEEEEec
Confidence 6666 99999999999999999999999998 653
No 155
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=65.73 E-value=4.8 Score=28.47 Aligned_cols=34 Identities=9% Similarity=0.023 Sum_probs=30.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
|.+- +++++.++-|-.++.|+.|++.|+|.....
T Consensus 30 s~~e----La~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 30 FVSE----LSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 6666 899999999999999999999999988643
No 156
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=64.81 E-value=2.5 Score=30.70 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=30.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++++.++-|-..++++.|+++|+|....
T Consensus 176 t~~e----La~~l~i~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 176 LLKD----LIETIHHKYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp EHHH----HHHHSSSCHHHHHHHHHHHHHHTSSEEEE
T ss_pred CHHH----HHHHHCCChhhHHHHHHHHHHCCCEEeeC
Confidence 7777 99999999999999999999999999874
No 157
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=63.13 E-value=0.66 Score=30.42 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=29.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|++- +++.+.++-|-..+.|+.|+++|+|....
T Consensus 88 t~~e----La~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 88 RPTE----LSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp CHHH----HHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 6666 89999999999999999999999998763
No 158
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=63.02 E-value=2.8 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=26.4
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
+++++.++-+-+++-|+.|+++|+|+.+
T Consensus 47 LA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 47 ISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 8999999999999999999999999864
No 159
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=61.69 E-value=6.2 Score=25.11 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=28.7
Q ss_pred EEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 40 LCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 40 li~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
+-+|..- +++.+.++-.-.+|++++|.++|+|+.
T Consensus 163 ~~~t~~~----lA~~lg~sr~tvsR~l~~l~~~g~I~~ 196 (207)
T 2oz6_A 163 IKITRQE----IGRIVGCSREMVGRVLKSLEEQGLVHV 196 (207)
T ss_dssp EECCHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cccCHHH----HHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 3335555 999999999999999999999999964
No 160
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=59.91 E-value=16 Score=23.24 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.9
Q ss_pred eeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 54 LVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 54 rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
.+.|+-+--..+|+.|+++|+|....
T Consensus 42 ~~~i~~gtly~~L~rLe~~GlI~~~~ 67 (116)
T 3f8b_A 42 EMELNEATLYTIFKRLEKDGIISSYW 67 (116)
T ss_dssp CCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 46788899999999999999998764
No 161
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=59.70 E-value=4.1 Score=27.71 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=25.8
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
+++.+.++-+-+++.|+.|+++|+|+.-
T Consensus 30 ia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 30 IARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 8899999999899999999999999865
No 162
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=59.64 E-value=5.5 Score=26.25 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=29.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
|... ++++++|+-+..++.++.|.+.|+|.-+..
T Consensus 32 ~~~~----iA~~~~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 32 TSDY----MAESVNTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCcEEEccC
Confidence 6666 999999999999999999999999987654
No 163
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=59.48 E-value=6.2 Score=27.14 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=31.3
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeecc
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYA 82 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~ 82 (93)
|... +++++.|+-+..++.++.|.+.|+|.-...-.
T Consensus 46 s~~e----IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~ 81 (159)
T 3lwf_A 46 SLRS----IAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAH 81 (159)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEECSTT
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCeEEEecCCC
Confidence 6666 99999999999999999999999998765433
No 164
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=57.92 E-value=6.1 Score=26.17 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=31.4
Q ss_pred EEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 40 LCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 40 li~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
.+ |... ++++++|+-+..++.++.|.+.|+|.-+..
T Consensus 28 ~~-s~~~----IA~~~~i~~~~l~kil~~L~~aGlv~s~rG 63 (143)
T 3t8r_A 28 CI-SLKS----IAEENNLSDLYLEQLVGPLRNAGLIRSVRG 63 (143)
T ss_dssp CE-EHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred Cc-CHHH----HHHHHCcCHHHHHHHHHHHHHCCEEEecCC
Confidence 44 7777 999999999999999999999999986643
No 165
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=57.52 E-value=12 Score=23.52 Aligned_cols=37 Identities=8% Similarity=0.139 Sum_probs=29.6
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEE
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIY 87 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IY 87 (93)
+..++..+.+.-++.|..|.+++.|+.-........|
T Consensus 39 l~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y 75 (77)
T 3tdu_C 39 LSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSY 75 (77)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEE
T ss_pred HhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEE
Confidence 3456778889999999999999999998665555555
No 166
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=57.27 E-value=8.6 Score=24.78 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=31.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeec
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAY 81 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~ 81 (93)
|-.. ++-+|+++=+-+.++|-.|+++|.+..+...
T Consensus 31 Ta~~----IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~ 65 (75)
T 1sfu_A 31 TAIS----LSNRLKINKKKINQQLYKLQKEDTVKMVPSN 65 (75)
T ss_dssp CHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred HHHH----HHHHHCCCHHHHHHHHHHHHHCCCEecCCCC
Confidence 6666 9999999999999999999999999988543
No 167
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=56.56 E-value=9.6 Score=24.62 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=38.4
Q ss_pred eEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 39 KLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 39 Kli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|++ .-.- ++..++++-.-+-.-|++|++.|.|.=|-.-+...||-
T Consensus 20 Kvv-~Led----LA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyI 64 (72)
T 1wi9_A 20 KVV-LLED----LAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYI 64 (72)
T ss_dssp SEE-CHHH----HHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEEC
T ss_pred Cee-eHHH----HHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEe
Confidence 666 3344 78889999999999999999999999998888888884
No 168
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=55.92 E-value=7.6 Score=26.46 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.4
Q ss_pred eEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 39 KLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 39 Kli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
.+-+|..- +++.+.++=.-.+|+|++|.++|+|+.
T Consensus 215 ~l~lt~~~----lA~~lG~sr~tvsR~l~~L~~~GlI~~ 249 (260)
T 3kcc_A 215 QIKITRQE----IGQIVGCSRETVGRILKMLEDQNLISA 249 (260)
T ss_dssp EEECCHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred eecCCHHH----HHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 33345555 999999999999999999999999975
No 169
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=54.74 E-value=9.4 Score=24.52 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
|..- +++.+.++-.-.+|+|++|.++|+|+.
T Consensus 148 t~~~----lA~~lg~sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 148 THDE----LAAAVGSVRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHH----HHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 5555 999999999999999999999999974
No 170
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=53.96 E-value=4.6 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=26.0
Q ss_pred cccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 50 GFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 50 ~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
-+++.+.++-.-.+|++++|.++|+|+.
T Consensus 185 ~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 185 ELATLSNMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 3999999999999999999999999975
No 171
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=53.00 E-value=5.7 Score=28.95 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=29.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-..+.|+.|+++|+|+..
T Consensus 168 s~~e----LA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 168 GITE----LAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 5566 9999999999999999999999999875
No 172
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=51.45 E-value=8.1 Score=24.79 Aligned_cols=27 Identities=7% Similarity=0.223 Sum_probs=25.5
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
+++.+.++=+-.+|++++|.++|+|+.
T Consensus 175 lA~~lg~sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 175 IANHLGSHREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 999999999999999999999999974
No 173
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=51.25 E-value=6.8 Score=25.69 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=27.7
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
+++++.|+-+..++.+..|.+.|+|.-+..
T Consensus 29 IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG 58 (145)
T 1xd7_A 29 IADSVNTNPVVVRRMISLLKKADILTSRAG 58 (145)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCceEeecC
Confidence 899999999999999999999999987654
No 174
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=49.91 E-value=5.7 Score=26.63 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=26.5
Q ss_pred ccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 49 AGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 49 ~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
.-+++.+.++=.-.+|+|++|.++|+|+.
T Consensus 197 ~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 225 (243)
T 3la7_A 197 QAIAEAIGSTRVTVTRLLGDLREKKMISI 225 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHCCCEEE
Confidence 34999999999999999999999999975
No 175
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=49.40 E-value=8.8 Score=24.55 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=25.5
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
+++.+.++=+-.+|++++|.++|+|+.
T Consensus 169 lA~~lg~sr~tvsR~l~~l~~~g~I~~ 195 (216)
T 4ev0_A 169 LAALAGTSRETVSRVLHALAEEGVVRL 195 (216)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 999999999999999999999999974
No 176
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=48.38 E-value=14 Score=23.78 Aligned_cols=38 Identities=11% Similarity=0.293 Sum_probs=30.2
Q ss_pred cccee-----eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 51 FNCLV-----HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 51 ~~~rl-----kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
+.+++ .|+-+=.-|.|+.|++.|+|..+.......-|-
T Consensus 32 i~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 32 LHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEE
T ss_pred HHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 55555 678888899999999999999997655555664
No 177
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=48.14 E-value=11 Score=24.22 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=28.9
Q ss_pred EEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 40 LCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 40 li~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
+-+|..- +++.+.++=.-.+|+|++|.++|+|+.
T Consensus 138 ~~~t~~~----lA~~lg~sr~tvsR~l~~L~~~g~I~~ 171 (195)
T 3b02_A 138 VTVSHEE----IADATASIRESVSKVLADLRREGLIAT 171 (195)
T ss_dssp EECCHHH----HHHTTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred ccCCHHH----HHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 3335555 999999999999999999999999975
No 178
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=47.85 E-value=5.9 Score=25.59 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=26.5
Q ss_pred ccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 49 AGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 49 ~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
.-+++.+.++=+-.+|++++|.++|+|+.
T Consensus 182 ~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 210 (227)
T 3dkw_A 182 QLVAGHLSIQPETFSRIMHRLGDEGIIHL 210 (227)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCcEEe
Confidence 34999999999999999999999999975
No 179
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=47.61 E-value=6.5 Score=25.64 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=25.6
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
+++.+.++=.-.+|+|++|.++|+|+.
T Consensus 181 iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 181 IMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 999999999999999999999999975
No 180
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=47.48 E-value=3.9 Score=30.38 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIR 76 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik 76 (93)
|..- +++++.++-+-.||.|+.|+++|+|+
T Consensus 36 t~~e----La~~l~vs~~Tv~r~l~~Le~~Glv~ 65 (345)
T 2o0m_A 36 GRRS----LSETMGITERVLRTETDVLKQLNLIE 65 (345)
T ss_dssp ----------------------------------
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 6666 99999999999999999999999996
No 181
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=46.99 E-value=6.5 Score=25.68 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=25.5
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
+++.+.++-.-.+|++++|.++|+|+.
T Consensus 169 lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 169 IANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 999999999999999999999999975
No 182
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=46.33 E-value=6 Score=28.86 Aligned_cols=28 Identities=25% Similarity=0.103 Sum_probs=25.2
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
++.+++++-.+|+.+|.+++++|++-.=
T Consensus 174 la~~l~ws~~~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 174 FAKLVGMSVLLAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCEEEE
Confidence 7788899999999999999999998654
No 183
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=46.24 E-value=10 Score=24.55 Aligned_cols=29 Identities=10% Similarity=0.143 Sum_probs=26.3
Q ss_pred ccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 49 AGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 49 ~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
.-+++.+.++-.-.+|++++|.++|+|+.
T Consensus 171 ~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 171 EEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 34899999999999999999999999965
No 184
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=45.95 E-value=22 Score=22.92 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=28.8
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEE
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIY 87 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IY 87 (93)
+..|+..+.++-++.|..|.+++.|+.-... ....|
T Consensus 51 l~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~Y 86 (88)
T 3o2p_E 51 SHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYAY 86 (88)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEEE
T ss_pred HhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEEe
Confidence 4457788889999999999999999997544 55555
No 185
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=45.59 E-value=38 Score=22.56 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=21.7
Q ss_pred eeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 55 VHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 55 lkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+.|+-+--..+|+.|+++|+|....
T Consensus 72 ~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 72 YVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCcChhHHHHHHHHHHHCCCEEEEE
Confidence 4688888899999999999998764
No 186
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=44.38 E-value=7.6 Score=25.26 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=25.8
Q ss_pred cccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 50 GFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 50 ~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
-+++.+.++=.-.+|++++|.++|+|+.
T Consensus 182 ~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 182 EIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 3899999999999999999999999975
No 187
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=44.22 E-value=15 Score=24.40 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=26.9
Q ss_pred cccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 48 EAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 48 ~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
-.-+++.+.++=.-.+|++++|.++|+|+.
T Consensus 180 ~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~ 209 (250)
T 3e6c_C 180 QKSIGEITGVHHVTVSRVLASLKRENILDK 209 (250)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHCCCeEe
Confidence 344999999999999999999999999975
No 188
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=43.60 E-value=13 Score=26.12 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=25.4
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
++.+++++-.+|+.+|.+++++|++-.=.
T Consensus 126 la~~~~ws~~~a~e~L~~~e~~G~l~~D~ 154 (169)
T 1u5t_B 126 NNSKSNWTLGILMEVLQNCVDEGDLLIDK 154 (169)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 67788999999999999999999986543
No 189
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=42.43 E-value=12 Score=27.39 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=26.1
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
++++++++-+-.+.+++.|.++|+|..-
T Consensus 36 LA~~LgvS~~SV~~~lkkL~e~GLV~~~ 63 (200)
T 2p8t_A 36 ISERLELGEGSVRTLLRKLSHLDIIRSK 63 (200)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 8999999999999999999999999653
No 190
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=42.34 E-value=14 Score=22.49 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=32.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++++.++-|-.++-|+.|++. +|..- +......|+
T Consensus 43 ~~~e----la~~l~is~stvs~hL~~L~~~-lv~~~-~~gr~~~y~ 82 (99)
T 2zkz_A 43 NVTQ----IIQILKLPQSTVSQHLCKMRGK-VLKRN-RQGLEIYYS 82 (99)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHBTT-TBEEE-EETTEEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHH-hhhhe-EeCcEEEEE
Confidence 5566 8999999999999999999999 88764 345555665
No 191
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.90 E-value=13 Score=24.44 Aligned_cols=33 Identities=6% Similarity=0.136 Sum_probs=26.8
Q ss_pred eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 56 HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 56 kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
.|+-+=.-|.|+.|++.|+|..+........|-
T Consensus 53 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 53 NMSVATVYNNLRVFRESGLVKELTYGDASSRFD 85 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEE
T ss_pred CCChhhHHHHHHHHHHCCCEEEEeeCCCceEEE
Confidence 677888899999999999999997655555564
No 192
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=41.87 E-value=8.1 Score=25.57 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=27.8
Q ss_pred EeccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 42 FTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 42 ~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
+|..- +++.+.++=.-.+|++++|.++|+|+.
T Consensus 187 ~t~~~----lA~~lG~sr~tvsR~l~~l~~~glI~~ 218 (232)
T 1zyb_A 187 VKMDD----LARCLDDTRLNISKTLNELQDNGLIEL 218 (232)
T ss_dssp CCHHH----HHHHHTSCHHHHHHHHHHHHHTTSCEE
T ss_pred CCHHH----HHHHhCCChhHHHHHHHHHHHCCCEEe
Confidence 35555 899999999999999999999999974
No 193
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=41.78 E-value=5.4 Score=26.08 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=0.0
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
+++.+.++-.-.+|++++|.++|+|+.
T Consensus 170 lA~~lg~sr~tvsR~l~~L~~~G~I~~ 196 (213)
T 1o5l_A 170 LSRLFGCARPALSRVFQELEREGYIEK 196 (213)
T ss_dssp ---------------------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCeEEE
Confidence 899999999999999999999999964
No 194
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=41.66 E-value=7.3 Score=29.36 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=23.6
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
+...+.++-..|+.+|.+|+++|+.=.
T Consensus 174 L~~~l~W~~~Ra~~~L~~l~~~Gllwv 200 (234)
T 3cuq_A 174 IKASLKWETERARQVLEHLLKEGLAWL 200 (234)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHhCCCHHHHHHHHHHHHhCCCEEE
Confidence 677888999999999999999998743
No 195
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=40.88 E-value=5.7 Score=32.47 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=0.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
|.+- +.++++++-.=|+++|+.|+++|+|++.-+
T Consensus 532 t~~d----i~~l~~ls~~qa~~~L~~Lv~~G~l~~~G~ 565 (583)
T 3lmm_A 532 ATSD----LMAMCGVSRGTAKACVDGLVDEERVVAVGG 565 (583)
T ss_dssp --------------------------------------
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 5555 999999999999999999999999988743
No 196
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=39.63 E-value=8.5 Score=27.90 Aligned_cols=33 Identities=18% Similarity=0.028 Sum_probs=28.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|..- +++++.+.-|=..+.|+.|+++|+|....
T Consensus 52 ~~~e----l~~~l~~~~~t~t~~l~rLe~~G~i~R~~ 84 (250)
T 1p4x_A 52 PFKK----IVSDLCYKQSDLVQHIKVLVKHSYISKVR 84 (250)
T ss_dssp EHHH----HHHHSSSCGGGTHHHHHHHHHTTSCEEEE
T ss_pred CHHH----HHHHHCCCHhhHHHHHHHHHHCCCEEecC
Confidence 6666 88899998888889999999999998873
No 197
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=39.02 E-value=15 Score=28.03 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=28.3
Q ss_pred eccCCccccccee--eeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLV--HISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rl--kI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
++.. +++++ .+|-.=.|+-+.+|+++|+|+..-
T Consensus 38 ~s~~----La~~~~l~VS~aTIRrDL~~LE~~GlL~r~H 72 (338)
T 1stz_A 38 SSQR----VLEVSNIEFSSATIRNDMKKLEYLGYIYQPH 72 (338)
T ss_dssp CHHH----HHHHSCCCSCHHHHHHHHHHHHHTTSEECCS
T ss_pred cHHH----HHHHhCCCCCHHHHHHHHHHHHHCCCEEEcc
Confidence 4555 78888 899999999999999999998753
No 198
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=38.70 E-value=11 Score=24.89 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=28.2
Q ss_pred eccCCcccccc-eeeeeHHHHHHHHHHHHHcCCee
Q 038379 43 TSTGNEAGFNC-LVHISGSLASRAIKDLVARGSIR 76 (93)
Q Consensus 43 T~s~~~~~~~~-rlkI~gSLAr~alkdL~~kG~Ik 76 (93)
|++. +.+ .+.+.-|.-.+.++-|+++|++.
T Consensus 32 t~~~----Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 32 TAAE----VREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp CHHH----HHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred CHHH----HHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 7777 999 99999999999999999999998
No 199
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=38.62 E-value=44 Score=21.54 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=30.0
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEE
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIY 87 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IY 87 (93)
+..|+..+-++-++.|..|.+++.|..-........|
T Consensus 54 l~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y 90 (92)
T 1iuy_A 54 LKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTY 90 (92)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEE
T ss_pred HcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEe
Confidence 3456777889999999999999999987666566666
No 200
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=37.93 E-value=74 Score=20.18 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=22.4
Q ss_pred eeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 54 LVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 54 rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
.+.|+-+--..+|+.|+++|+|....
T Consensus 51 ~~~is~gtLY~~L~rLe~~GlI~~~~ 76 (115)
T 2dql_A 51 TYRLSDTVLYSAIKFLEDNRAITGYW 76 (115)
T ss_dssp TEECCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 56788888899999999999998763
No 201
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=37.65 E-value=10 Score=25.23 Aligned_cols=28 Identities=25% Similarity=0.172 Sum_probs=24.9
Q ss_pred cccceeeeeHH-HHHHHHHHHHHcCCeee
Q 038379 50 GFNCLVHISGS-LASRAIKDLVARGSIRM 77 (93)
Q Consensus 50 ~~~~rlkI~gS-LAr~alkdL~~kG~Ik~ 77 (93)
-+++.+.++-| -.+|+|++|.++|+|+.
T Consensus 174 ~lA~~lG~sr~etvsR~l~~l~~~glI~~ 202 (238)
T 2bgc_A 174 ELGYSSGIAHSSAVSRIISKLKQEKVIVY 202 (238)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhCCChHHHHHHHHHHHHHCCCEEe
Confidence 38999999995 88899999999999975
No 202
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.57 E-value=51 Score=21.73 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=26.3
Q ss_pred eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 56 HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 56 kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
.|+-+=.-|.|+.|++.|+|..+.-.....-|-
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 81 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFE 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 577777889999999999999997544555564
No 203
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=37.54 E-value=13 Score=23.68 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=44.6
Q ss_pred eechhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 3 LFDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 3 lfDk~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
.|..+.|+++...+.+ -....|. ||.+- +-+.+.++-..|-..|+.|-+.|+.+.+..
T Consensus 58 ~~~~~~~~~~~~~l~~---------~~~~~~~-------it~ae----~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd 115 (121)
T 2pjp_A 58 YYRNDRIVEFANMIRD---------LDQECGS-------TCAAD----FRDRLGVGRKLAIQILEYFDRIGFTRRRGN 115 (121)
T ss_dssp EEEHHHHHHHHHHHHH---------HHHHHSS-------EEHHH----HHHHHTSCHHHHHHHHHHHHHHTSEEEETT
T ss_pred eECHHHHHHHHHHHHH---------HHHHCCC-------ccHHH----HHHHHCCcHHHHHHHHHHHhhcCCeEeeCC
Confidence 5677778887777776 1122244 58888 999999998999999999999999988743
No 204
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=37.34 E-value=6 Score=29.98 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=32.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
|.+- +++++.|+-|=+..+|+.|+++|++..... .-..|.
T Consensus 34 t~~e----ia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g--~p~~y~ 73 (342)
T 3qph_A 34 TAKE----ISTKSGIPYNRVYDTISSLKLRGFVTEIEG--TPKVYA 73 (342)
T ss_dssp HHSC----CSSSTTSSSCSCCHHHHHHHHHTSEEEECC--TTCEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEEcC--ceeEEE
Confidence 5566 899999999999999999999999998743 334455
No 205
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=36.99 E-value=38 Score=21.99 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=30.0
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
+.+- +++++-+.-|--++.+..|+++|+|..-..
T Consensus 38 s~~e----La~~l~l~~stLsR~l~rLe~~GLV~r~~~ 71 (96)
T 2obp_A 38 SLPK----IAKRAQLPMSVLRRVLTQLQAAGLADVSVE 71 (96)
T ss_dssp BHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CHHH----HHHHhCCchhhHHHHHHHHHHCCCEEeecC
Confidence 5566 899999999999999999999999997544
No 206
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=36.49 E-value=53 Score=21.62 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=27.0
Q ss_pred eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 56 HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 56 kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
.|+-+=.-|.|+.|++.|+|..+.......-|-
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 90 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKSGRRYE 90 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEE
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 577777889999999999999997655656665
No 207
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=36.44 E-value=60 Score=20.78 Aligned_cols=25 Identities=8% Similarity=-0.072 Sum_probs=21.5
Q ss_pred eeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 55 VHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 55 lkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
..|+-+---.+|+.|+++|+|....
T Consensus 42 ~~is~gtlY~~L~rLe~~GlI~~~~ 66 (116)
T 3hhh_A 42 TEIVEGTVYTILLRLEKNQWVIAEK 66 (116)
T ss_dssp SSCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEe
Confidence 4678888899999999999998764
No 208
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=36.32 E-value=59 Score=20.64 Aligned_cols=25 Identities=8% Similarity=-0.069 Sum_probs=21.3
Q ss_pred eeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 55 VHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 55 lkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
..|+-+---.+|+.|+++|+|....
T Consensus 38 ~~is~gtlY~~L~rLe~~GlI~~~~ 62 (115)
T 4esb_A 38 TFVSEGSIYPLLLRMQKEKLIEGTL 62 (115)
T ss_dssp TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCcChHHHHHHHHHHCCCeEEEe
Confidence 4578888899999999999998764
No 209
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=36.19 E-value=26 Score=22.07 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=22.4
Q ss_pred eeH-HHHHHHHHHHHHcCCeeeeeec---cceEEE
Q 038379 57 ISG-SLASRAIKDLVARGSIRMISAY---ASQQIY 87 (93)
Q Consensus 57 I~g-SLAr~alkdL~~kG~Ik~Vs~~---~~Q~IY 87 (93)
|+- +--..+|+.|+++|+|...... ....+|
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y 80 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIY 80 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEE
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEE
Confidence 555 5567889999999999876432 344566
No 210
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=36.10 E-value=11 Score=28.41 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=25.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
|++. +...+..+-..|+.+|.+|+++|+.=.
T Consensus 183 t~~~----L~~~lgW~~~Ra~~~L~~l~~~G~lwv 213 (233)
T 1u5t_A 183 SISL----LKANLGWEAVRSKSALDEMVANGLLWI 213 (233)
T ss_dssp BHHH----HHHHHCCCSHHHHHHHHHHHHTTSSEE
T ss_pred cHHH----HHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 5555 677888899999999999999998743
No 211
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=36.02 E-value=8.3 Score=26.26 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=30.1
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
|... +++++.|+-+..++.++.|.+.|+|.-+..
T Consensus 30 s~~~----IA~~~~is~~~l~kil~~L~~aGlv~s~rG 63 (162)
T 3k69_A 30 ASRE----LAQSLHLNPVMIRNILSVLHKHGYLTGTVG 63 (162)
T ss_dssp CHHH----HHHHHTSCGGGTHHHHHHHHHTTSSEEECS
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEeecC
Confidence 6666 999999999999999999999999976543
No 212
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=35.93 E-value=14 Score=25.93 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=28.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-+.+.|+.|++.|+|...
T Consensus 25 ~~~e----la~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 25 SVSE----IAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp CHHH----HHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 5555 8999999999999999999999999875
No 213
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.60 E-value=39 Score=21.74 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=26.1
Q ss_pred eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 56 HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 56 kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
.|+-+=.-|.|+.|++.|+|..+.......-|-
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 82 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFE 82 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 677777899999999999999987544445564
No 214
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=33.90 E-value=66 Score=20.53 Aligned_cols=24 Identities=4% Similarity=0.048 Sum_probs=21.0
Q ss_pred eeeHHHHHHHHHHHHHcCCeeeee
Q 038379 56 HISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 56 kI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
.|+-+--..+|+.|+++|+|....
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~ 64 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEK 64 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCccHHHHHHHHHHHCCCEEEEe
Confidence 677788899999999999998764
No 215
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.38 E-value=58 Score=21.16 Aligned_cols=33 Identities=12% Similarity=0.357 Sum_probs=26.1
Q ss_pred eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 56 HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 56 kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
.|+-+=.-|.|+.|++.|+|+.+.-.....-|-
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~ 77 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTAEGESVYR 77 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEE
Confidence 467777789999999999999997655555564
No 216
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=33.24 E-value=53 Score=20.26 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=33.0
Q ss_pred echhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCC----cccccceeeeeHHHHHHHHHHHHHc
Q 038379 4 FDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGN----EAGFNCLVHISGSLASRAIKDLVAR 72 (93)
Q Consensus 4 fDk~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~----~~~~~~rlkI~gSLAr~alkdL~~k 72 (93)
.|...|+.+..+|.+ .. ++-|.+.-++++ ++... ..|+.=--=-+-.=|.+|++.|--+
T Consensus 20 ~~d~~~~~~~~dl~~---~f------~k~G~V~~v~i~-~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 20 LDDEEYEEIVEDVRD---EC------SKYGLVKSIEIP-RPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SSHHHHHHHHHHHHH---HH------HTTSCEEEEECC-CCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cChHHHHHHHHHHHH---HH------HccCCEEEEEEe-ccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 355667777888877 12 334555556665 44321 2233222222456799999998653
No 217
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=32.61 E-value=17 Score=25.44 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=29.2
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-+.+.|+.|++.|+|...
T Consensus 23 s~~e----la~~~gl~~stv~r~l~~L~~~G~v~~~ 54 (241)
T 2xrn_A 23 SLAA----IAQLVGLPRSTVQRIINALEEEFLVEAL 54 (241)
T ss_dssp EHHH----HHHHTTSCHHHHHHHHHHHHTTTSEEEC
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 6666 9999999999999999999999999875
No 218
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.23 E-value=54 Score=21.45 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=25.8
Q ss_pred eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 56 HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 56 kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
.|+-+=.-|.|+.|++.|+|+.+.-.....-|-
T Consensus 49 ~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~ 81 (145)
T 3eyy_A 49 GINISTVYRTLELLEELGLVSHAHLGHGAPTYH 81 (145)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 466667789999999999999997655555564
No 219
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=31.55 E-value=1.1e+02 Score=20.29 Aligned_cols=26 Identities=19% Similarity=0.018 Sum_probs=22.8
Q ss_pred eeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 54 LVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 54 rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
.++|+-+--..+|+.|+++|+|....
T Consensus 63 ~~~is~gtLYp~L~rLe~~GlI~~~~ 88 (138)
T 2e1n_A 63 NYRLSDTVLYTALKFLEDEQIISGYW 88 (138)
T ss_dssp TEECCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 57889888899999999999998763
No 220
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=31.04 E-value=67 Score=20.35 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.9
Q ss_pred eeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 56 HISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 56 kI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
.++-+---.+|+.|+++|+|.... -....+|+
T Consensus 41 ~is~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~ 72 (99)
T 2co5_A 41 DISDGVLYPLIDSLIDDKILREEE-APDGKVLF 72 (99)
T ss_dssp BCCHHHHHHHHHHHHHTTSEEEEC-CTTSCEEE
T ss_pred CCCCCcHHHHHHHHHHCCCEEEee-CCCcEEEE
Confidence 677677788999999999998765 33444554
No 221
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=30.90 E-value=27 Score=24.71 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=28.7
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-+.+.|+.|++.|+|...
T Consensus 40 ~~~e----ia~~~gl~kstv~r~l~tL~~~G~v~~~ 71 (260)
T 2o0y_A 40 SLKE----LVEGTKLPKTTVVRLVATMCARSVLTSR 71 (260)
T ss_dssp CHHH----HHHHHCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEC
Confidence 5555 8999999999999999999999999875
No 222
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=30.39 E-value=94 Score=20.21 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.1
Q ss_pred eeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 55 VHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 55 lkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
+.|+-+---.+|+.|+++|+|....
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~ 72 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEW 72 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEe
Confidence 6888888899999999999998763
No 223
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=28.78 E-value=21 Score=26.33 Aligned_cols=30 Identities=7% Similarity=0.068 Sum_probs=27.7
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
+++++.++-+-..+.+++|+++|+|+....
T Consensus 39 la~~~gls~~tv~~~v~~L~~~gli~~~~~ 68 (380)
T 2hoe_A 39 LAEELGLTKTTVGEIAKIFLEKGIVVEEKD 68 (380)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEeecC
Confidence 899999999999999999999999998743
No 224
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=27.86 E-value=57 Score=24.54 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=29.4
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEEE
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIYT 88 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IYT 88 (93)
+-+.+.|+....|.||.-|+++|.+... .......|.
T Consensus 51 l~~~~Gi~~~avR~Al~RL~~~G~l~~~-~~Gr~~~Y~ 87 (266)
T 3l09_A 51 FVERMGLQPQAMRVALHRLKRDGWVESR-RLGRVGFHR 87 (266)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEEEE-EETTEEEEE
T ss_pred HHHHcCCCchHHHHHHHHHHHCCCeeee-ecCCcceEE
Confidence 5577889999999999999999999875 344444554
No 225
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=26.97 E-value=58 Score=21.71 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=22.2
Q ss_pred ceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 53 CLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 53 ~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
...+++-+--..+|+.|+++|+|....
T Consensus 31 ~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 31 YFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp GTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 345788888899999999999998753
No 226
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=26.92 E-value=32 Score=24.18 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=28.6
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-+.+.|+.|++.|++..-
T Consensus 31 ~~~e----ia~~~gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 31 TLAE----LATEAGLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp BHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 5555 8999999999999999999999999764
No 227
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=26.41 E-value=29 Score=24.63 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=29.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.++-|=+.|.|+.|++.|++..-.
T Consensus 23 sl~e----ia~~lgl~ksT~~RlL~tL~~~G~v~~~~ 55 (260)
T 3r4k_A 23 GLSD----LTRLSGMNKATVYRLMSELQEAGFVEQVE 55 (260)
T ss_dssp EHHH----HHHHHCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 6666 99999999999999999999999997643
No 228
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=26.07 E-value=22 Score=25.88 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=28.5
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRM 77 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~ 77 (93)
|+.. +++++.++.|--+..|++|.+.|+|+.
T Consensus 180 t~~~----la~~~~l~~~~V~~~l~~L~~~~~v~~ 210 (232)
T 2qlz_A 180 TVEE----LSDRLNLKEREVREKISEMARFVPVKI 210 (232)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHTTTSCEEE
T ss_pred CHHH----HHHHhCcCHHHHHHHHHHHHhcCCeEE
Confidence 6666 999999999999999999999999974
No 229
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.56 E-value=26 Score=26.24 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=29.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.++-+-..+.+++|+++|+|+...
T Consensus 55 sr~e----la~~~gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 55 SRID----LSKESELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp CHHH----HHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 5555 89999999999999999999999998864
No 230
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=25.02 E-value=15 Score=26.84 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=0.0
Q ss_pred cccee-eeeHHHHHHHHHHHHHcCCee
Q 038379 51 FNCLV-HISGSLASRAIKDLVARGSIR 76 (93)
Q Consensus 51 ~~~rl-kI~gSLAr~alkdL~~kG~Ik 76 (93)
+..++ +++-+--+.||.+|.+.|.|=
T Consensus 230 I~~~l~~~~~~~v~~al~~L~~eG~IY 256 (270)
T 2pi2_A 230 LKNQLKHMSVSSIKQAVDFLSNEGHIY 256 (270)
T ss_dssp ---------------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHhCCEEe
Confidence 55666 588888999999999999984
No 231
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=24.75 E-value=16 Score=21.66 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=27.2
Q ss_pred EeccCCcccccceeeeeHHHHHHHHHHHHHc-CCeeeeeec-cceEEEEe
Q 038379 42 FTSTGNEAGFNCLVHISGSLASRAIKDLVAR-GSIRMISAY-ASQQIYTR 89 (93)
Q Consensus 42 ~T~s~~~~~~~~rlkI~gSLAr~alkdL~~k-G~Ik~Vs~~-~~Q~IYTR 89 (93)
+|..- +++.+.|+ .+.|+..+++ |++.+.-.. .....|+.
T Consensus 6 ~~i~e----~A~~~gvs----~~tlR~ye~~~gl~~p~r~~~~g~R~Y~~ 47 (81)
T 2jml_A 6 LRIRT----IARMTGIR----EATLRAWERRYGFPRPLRSEGNNYRVYSR 47 (81)
T ss_dssp EEHHH----HHHTTSTT----HHHHHHHHHHTCCSCCBSSSCSSSCEECH
T ss_pred ccHHH----HHHHHCcC----HHHHHHHHHhCCCCCCcCCCCCCeeecCH
Confidence 45555 66776665 5678889997 998876433 56677763
No 232
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=24.63 E-value=22 Score=26.21 Aligned_cols=33 Identities=3% Similarity=0.236 Sum_probs=29.1
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|.+- +++++.++-+-..+.+++|+++|+|+...
T Consensus 32 sr~~----la~~~~ls~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 32 SRID----LSRLAQLAPASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp CHHH----HHHHTTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred CHHH----HHHHHCCCHHHHHHHHHHHHHCCcEEeec
Confidence 5556 89999999999999999999999998864
No 233
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=24.12 E-value=54 Score=22.29 Aligned_cols=26 Identities=19% Similarity=0.018 Sum_probs=22.2
Q ss_pred eeeeeHHHHHHHHHHHHHcCCeeeee
Q 038379 54 LVHISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 54 rlkI~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
.++|+-+--..+|+.|+++|+|....
T Consensus 73 ~~~is~gtLYp~L~rLE~~GlI~~~~ 98 (148)
T 2zfw_A 73 NYRLSDTVLYTALKFLEDEQIISGYW 98 (148)
T ss_dssp TEECCSHHHHHHHHHHHHTSSEEEEC
T ss_pred CCCCChhHHHHHHHHHHHCCCEEEEe
Confidence 56788788899999999999998763
No 234
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=23.91 E-value=29 Score=22.00 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=24.8
Q ss_pred eEEEeccCCcccccceeeeeHHHHHHHHHHHHH
Q 038379 39 KLCFTSTGNEAGFNCLVHISGSLASRAIKDLVA 71 (93)
Q Consensus 39 Kli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~ 71 (93)
++.|||+. .-+.-++..+.+++..+-|++
T Consensus 4 ~i~f~~~A----~K~l~kLd~~~~~ri~~~l~~ 32 (95)
T 4fxi_A 4 FLDFDERA----LKEWRKLGSTVREQLKKKLVE 32 (95)
T ss_dssp EEEECHHH----HHHHHHSCHHHHHHHHHHHHH
T ss_pred EEEECHHH----HHHHHhCCHHHHHHHHHHHHH
Confidence 89999999 889999999998887766654
No 235
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=23.33 E-value=80 Score=24.12 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=30.0
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeeeccceEEE
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISAYASQQIY 87 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~~~~Q~IY 87 (93)
+..|+..+-+.-++.|..|.+|+.|+.-........|
T Consensus 344 l~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~Y 380 (382)
T 3dpl_C 344 LKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIY 380 (382)
T ss_dssp TTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEE
T ss_pred HHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEE
Confidence 4457888889999999999999999997665555555
No 236
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=23.25 E-value=27 Score=25.28 Aligned_cols=17 Identities=12% Similarity=0.228 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCeeee
Q 038379 62 ASRAIKDLVARGSIRMI 78 (93)
Q Consensus 62 Ar~alkdL~~kG~Ik~V 78 (93)
+-+||.+|.++|.||-|
T Consensus 148 ~~~al~~l~~~Gkir~i 164 (324)
T 3ln3_A 148 TWERLEECXDAGLVXSI 164 (324)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCeeEE
Confidence 45899999999999998
No 237
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=23.24 E-value=27 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCeeee--eecc
Q 038379 62 ASRAIKDLVARGSIRMI--SAYA 82 (93)
Q Consensus 62 Ar~alkdL~~kG~Ik~V--s~~~ 82 (93)
+-+|+.+|.++|.||-| |.+.
T Consensus 141 ~~~al~~l~~~Gkir~iGvSn~~ 163 (316)
T 3o3r_A 141 AWEGMEELVDQGLVKALGVSNFN 163 (316)
T ss_dssp HHHHHHHHHHTTSEEEEEEESCC
T ss_pred HHHHHHHHHHcCCCcEEEEecCC
Confidence 44899999999999998 4443
No 238
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=23.02 E-value=30 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=28.9
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
|.+- +++++.++-|-+.+.|+.|++.|++..-
T Consensus 38 ~~~e----ia~~~gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 38 TLSD----VARATDLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp EHHH----HHHHHTCCHHHHHHHHHHHHHHTSEEES
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 5666 8999999999999999999999999764
No 239
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=22.37 E-value=1.1e+02 Score=19.38 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=31.8
Q ss_pred echhhhhhhhhhhhhhhhhhhhcCccccccceeeeeEEEeccCCcccccceeeeeHHHHHHHHHHHHHc
Q 038379 4 FDQGTYDKHFPTLRECLFLVRSCGKVSQEGTKMFVKLCFTSTGNEAGFNCLVHISGSLASRAIKDLVAR 72 (93)
Q Consensus 4 fDk~TydK~~kev~~~~~~~~~~~~~~~~g~~~~vKli~T~s~~~~~~~~rlkI~gSLAr~alkdL~~k 72 (93)
-|.+.|+.+..+|.+ ....+|+| .-+++. .++ ..|+.=----+-.=|.+|++.|--+
T Consensus 22 ~d~~~~~el~edl~~---~f~kfG~V------~~v~i~-~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 22 EEVGWDTEIKDDVIE---ECNKHGGV------IHIYVD-KNS--AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CSTTHHHHHHHHHHH---HHTTTTCC------SEEEEC-TTC--TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred cChhHHHHHHHHHHH---HHhccCCE------EEEEEe-cCC--CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 345568888888887 22344444 344554 333 2333221122345789999998654
No 240
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=22.25 E-value=22 Score=25.40 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCeeee--eecc
Q 038379 62 ASRAIKDLVARGSIRMI--SAYA 82 (93)
Q Consensus 62 Ar~alkdL~~kG~Ik~V--s~~~ 82 (93)
+-+||.+|.++|.||-| |.+.
T Consensus 142 ~~~al~~l~~~Gkir~iGvSn~~ 164 (324)
T 4gac_A 142 TWKALEVLVAKGLVKALGLSNFN 164 (324)
T ss_dssp HHHHHHHHHHTTSBSCEEEESCC
T ss_pred HHHHHHHHHHCCCeeEecCCCCC
Confidence 45799999999999987 4444
No 241
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=22.13 E-value=1.1e+02 Score=19.43 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=18.4
Q ss_pred eeHHHHHHHHHHHHHcCCeeeee
Q 038379 57 ISGSLASRAIKDLVARGSIRMIS 79 (93)
Q Consensus 57 I~gSLAr~alkdL~~kG~Ik~Vs 79 (93)
|+-+--..+|+.|+++|+|....
T Consensus 45 i~~gtly~~L~~Le~~GlI~~~~ 67 (117)
T 3elk_A 45 LPQGSIYILLKTMKERGFVISES 67 (117)
T ss_dssp CCTTHHHHHHHHHHHHTSEEEEE
T ss_pred CCcchHHHHHHHHHHCCCEEEEe
Confidence 44456678999999999998764
No 242
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=21.91 E-value=40 Score=21.90 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=23.5
Q ss_pred ccccceeeeeHHHHHHHHHHHHHcCC
Q 038379 49 AGFNCLVHISGSLASRAIKDLVARGS 74 (93)
Q Consensus 49 ~~~~~rlkI~gSLAr~alkdL~~kG~ 74 (93)
.-+++.+.++=.-.+|++++|.++|+
T Consensus 182 ~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 182 MLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 34899999999999999999999993
No 243
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=21.62 E-value=29 Score=20.42 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=14.6
Q ss_pred eeeeeHHHHHHHHHHHHHcCC
Q 038379 54 LVHISGSLASRAIKDLVARGS 74 (93)
Q Consensus 54 rlkI~gSLAr~alkdL~~kG~ 74 (93)
.+--+|+|-+.|.+.|.++|+
T Consensus 18 ~Llr~G~LIkEAVrRlq~~~l 38 (39)
T 1gng_X 18 QLVLSGNLIKEAVRRLHSRRL 38 (39)
T ss_dssp HHHHHTCHHHHHHHHHHC---
T ss_pred HHHHhCcHHHHHHHHHHHccC
Confidence 344578999999999998875
No 244
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=21.61 E-value=47 Score=24.56 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=27.7
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
+...+.+|=|-|+-+|.-|+..|.|+.|..
T Consensus 30 Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~ 59 (165)
T 2vxz_A 30 IQQRLGLSHGRAKALIYVLEKEGRVTRVAF 59 (165)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHhCCcHHHHHHHHHHHHhcCceEEEEE
Confidence 788899999999999999999999999854
No 245
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=21.31 E-value=25 Score=23.75 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=27.4
Q ss_pred eccCCcccccceeeeeHHHHHHHHHHHHHcCC-eee
Q 038379 43 TSTGNEAGFNCLVHISGSLASRAIKDLVARGS-IRM 77 (93)
Q Consensus 43 T~s~~~~~~~~rlkI~gSLAr~alkdL~~kG~-Ik~ 77 (93)
|.+- +++++.|+-+-.++=|+.|++.|. |..
T Consensus 38 s~~e----La~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 38 SGAQ----LAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp CHHH----HHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred CHHH----HHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 5556 999999999999999999999999 753
No 246
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=21.16 E-value=20 Score=24.21 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=0.0
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMI 78 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~V 78 (93)
-+++++|+=|-.++.|+.||+.==.+..
T Consensus 21 AA~~L~isq~avS~~I~~LE~~lg~~Lf 48 (312)
T 2h9b_A 21 AADKLCIAQPPLSRQIQNLEEELGIQLL 48 (312)
T ss_dssp ----------------------------
T ss_pred HHHHhcCCccHHHHHHHHHHHHhCCEeE
Confidence 3588999999999999999986333333
No 247
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*
Probab=20.98 E-value=32 Score=24.67 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCCeeee
Q 038379 62 ASRAIKDLVARGSIRMI 78 (93)
Q Consensus 62 Ar~alkdL~~kG~Ik~V 78 (93)
+-+++.+|.++|.||-|
T Consensus 134 ~~~al~~l~~~Gkir~i 150 (288)
T 4f40_A 134 SWRAFEQLYKEKKVRAI 150 (288)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCccEE
Confidence 34799999999999998
No 248
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=20.80 E-value=58 Score=17.98 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=18.6
Q ss_pred eEEEeccCCcccccceeeeeHHHHHHHHHH
Q 038379 39 KLCFTSTGNEAGFNCLVHISGSLASRAIKD 68 (93)
Q Consensus 39 Kli~T~s~~~~~~~~rlkI~gSLAr~alkd 68 (93)
++.||+.. ..+.-++.-+.|++..+.
T Consensus 4 ~i~~~~~a----~~dl~~l~~~~~~~i~~~ 29 (89)
T 2khe_A 4 RIEFDPRA----EKELEKLDREVARRILRF 29 (89)
T ss_dssp EEEECTTH----HHHHHTSCHHHHHHHHHH
T ss_pred EEEECHHH----HHHHHHCCHHHHHHHHHH
Confidence 78889988 667777777777665443
No 249
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=20.73 E-value=34 Score=21.85 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=27.0
Q ss_pred ccceeeeeHHHHHHHHHHHHHcCCeeeeee
Q 038379 51 FNCLVHISGSLASRAIKDLVARGSIRMISA 80 (93)
Q Consensus 51 ~~~rlkI~gSLAr~alkdL~~kG~Ik~Vs~ 80 (93)
+--+|+|-=.=|.+.|..|++.|+|-+-..
T Consensus 30 lQR~lrIGYnRAArlid~lE~~GiVgp~~g 59 (73)
T 2ve8_A 30 VQRKLKIGYNRAARMIEAMEMAGVVTPMNT 59 (73)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSBCCCCT
T ss_pred HHHHHccChHHHHHHHHHHHHCCcCCcccC
Confidence 788999999999999999999999988643
No 250
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=20.56 E-value=1.5e+02 Score=18.49 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=19.4
Q ss_pred eeeeHH--HHHHHHHHHHHcCCeeeeeec
Q 038379 55 VHISGS--LASRAIKDLVARGSIRMISAY 81 (93)
Q Consensus 55 lkI~gS--LAr~alkdL~~kG~Ik~Vs~~ 81 (93)
+.++|+ -..+|++.|.++|..-.+..|
T Consensus 69 v~l~G~~~~~~~ai~~L~~~~v~vEvl~~ 97 (106)
T 3dhx_A 69 TEMHGTQQDTQAAIAWLQEHHVKVEVLGY 97 (106)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHCCCEEEEeee
Confidence 345554 346899999999987766544
Done!