Query 038380
Match_columns 261
No_of_seqs 111 out of 120
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 18:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cgi_A Propanediol utilization 81.9 0.81 2.8E-05 37.3 2.8 22 101-122 8-30 (124)
2 1hx6_A Protein P3, major capsi 65.4 1.8 6E-05 39.9 0.9 14 16-29 135-148 (394)
3 2k5k_A Uncharacterized protein 14.7 54 0.0018 24.6 1.0 9 16-24 45-53 (70)
4 4fay_A Microcompartments prote 9.5 67 0.0023 29.2 0.1 32 90-122 18-52 (258)
5 1s7z_A Gene 0.3 protein; all h 9.4 40 0.0014 27.3 -1.3 11 17-27 46-56 (117)
6 4axi_A EUTS, ethanolamine carb 9.2 2E+02 0.0069 23.2 2.8 22 100-121 7-29 (125)
7 1jgn_B PAIP2, polyadenylate-bi 9.1 90 0.0031 19.2 0.5 9 18-26 16-24 (26)
8 2eis_A Hypothetical protein TT 7.6 1.1E+02 0.0039 22.0 0.6 15 17-31 58-72 (133)
9 2egj_A Hypothetical protein AQ 7.4 1.2E+02 0.004 21.4 0.6 17 16-32 64-80 (128)
10 3emf_A HIA (adhesin); binding 7.1 1.7E+02 0.006 23.7 1.5 38 71-108 78-115 (116)
No 1
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=81.94 E-value=0.81 Score=37.27 Aligned_cols=22 Identities=41% Similarity=0.421 Sum_probs=19.5
Q ss_pred ceeEEeeecc-eeeeeeecCCCC
Q 038380 101 RRIITESVGG-QVVGRHEEPTPV 122 (261)
Q Consensus 101 ~RIvTE~VaG-QVvgq~~~p~~~ 122 (261)
-|||+|||+| ||+..++-|.|.
T Consensus 8 ~r~i~e~V~gkqv~~~~VIan~~ 30 (124)
T 3cgi_A 8 DRMIQEYVPGKQVTLAHLIANPG 30 (124)
T ss_dssp CEEEEEECCCCEEEEEEEESSCC
T ss_pred eeEEEeeeCCEEEEEeeeeCCCC
Confidence 5999999997 999999988774
No 2
>1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat protein, jelly roll, viral beta barrel, viral protein; 1.65A {Enterobacteria phage PRD1} SCOP: b.121.2.1 b.121.2.1 PDB: 1gw7_A 1gw8_A 1hb5_A 1hb7_A 1hb9_A 1hqn_A 1cjd_A 1w8x_A
Probab=65.39 E-value=1.8 Score=39.94 Aligned_cols=14 Identities=57% Similarity=1.004 Sum_probs=12.1
Q ss_pred CCCCccCceeeccc
Q 038380 16 QQPIKYGDFFNVSG 29 (261)
Q Consensus 16 ~~pikYgdvF~v~G 29 (261)
+.|||||||.||-.
T Consensus 135 dspikygdvmnvid 148 (394)
T 1hx6_A 135 DSPIKYGDVMNVID 148 (394)
T ss_dssp CCSSCCBSSSCSSB
T ss_pred CCCccccceeeecc
Confidence 67999999999854
No 3
>2k5k_A Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Probab=14.73 E-value=54 Score=24.57 Aligned_cols=9 Identities=33% Similarity=1.291 Sum_probs=7.9
Q ss_pred CCCCccCce
Q 038380 16 QQPIKYGDF 24 (261)
Q Consensus 16 ~~pikYgdv 24 (261)
.||.+|||-
T Consensus 45 ~EPtRYGDW 53 (70)
T 2k5k_A 45 PEPVRFGDW 53 (70)
T ss_dssp CCCCSCCCC
T ss_pred CCCcccccc
Confidence 689999995
No 4
>4fay_A Microcompartments protein; BMC domain, shell protein, glycerol-binding protein; 1.56A {Lactobacillus reuteri}
Probab=9.45 E-value=67 Score=29.17 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=15.4
Q ss_pred CeeEEeecCCCceeEEeeecc---eeeeeeecCCCC
Q 038380 90 GVTVTETDVPGRRIITESVGG---QVVGRHEEPTPV 122 (261)
Q Consensus 90 GV~Vtet~vpG~RIvTE~VaG---QVvgq~~~p~~~ 122 (261)
|+..... ....|+|||||+| |+-.-++-|.+.
T Consensus 18 ~~~~~~~-~~~~~~i~E~V~~~~~~~Ti~~VI~Nv~ 52 (258)
T 4fay_A 18 GSHMNDF-LNSTSTVPEFVGASEIGDTIGMVIPRVD 52 (258)
T ss_dssp --------------CTTEEEEETTTTEEEEEESSCC
T ss_pred Ccccccc-cccccceeeeeCcccccceEEEEeCCCC
Confidence 4444333 3467999999998 677777777773
No 5
>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A {Enterobacteria phage T7} SCOP: a.159.3.1 PDB: 2y7c_D
Probab=9.37 E-value=40 Score=27.26 Aligned_cols=11 Identities=45% Similarity=0.821 Sum_probs=9.7
Q ss_pred CCCccCceeec
Q 038380 17 QPIKYGDFFNV 27 (261)
Q Consensus 17 ~pikYgdvF~v 27 (261)
-|+-|+|||.|
T Consensus 46 VP~yy~diFsV 56 (117)
T 1s7z_A 46 VPHYYADIFSV 56 (117)
T ss_dssp SCCSHHHHHHH
T ss_pred CcchhhhHHhh
Confidence 49999999987
No 6
>4axi_A EUTS, ethanolamine carboxysome structural protein; bacterial microcompartment; HET: GOL; 1.51A {Clostridium difficile}
Probab=9.16 E-value=2e+02 Score=23.21 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=16.5
Q ss_pred CceeEEeeecc-eeeeeeecCCC
Q 038380 100 GRRIITESVGG-QVVGRHEEPTP 121 (261)
Q Consensus 100 G~RIvTE~VaG-QVvgq~~~p~~ 121 (261)
-.|||-|+|.| ||-.-++-|.+
T Consensus 7 ~~r~iqe~VpgkqvTla~vIanv 29 (125)
T 4axi_A 7 KQRVIQEYVPGKQVTLAHIIANP 29 (125)
T ss_dssp CEEEEEEECCCCEEEEEEEESSC
T ss_pred cceEEeeecCCcEEEEEEEeCCC
Confidence 35899999999 66556776665
No 7
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=9.10 E-value=90 Score=19.20 Aligned_cols=9 Identities=33% Similarity=0.826 Sum_probs=6.2
Q ss_pred CCccCceee
Q 038380 18 PIKYGDFFN 26 (261)
Q Consensus 18 pikYgdvF~ 26 (261)
-+|||++..
T Consensus 16 gvkygni~~ 24 (26)
T 1jgn_B 16 GVKYGNIXX 24 (26)
T ss_dssp TSCTTCC--
T ss_pred Cceecceec
Confidence 499999864
No 8
>2eis_A Hypothetical protein TTHB207; COA binding motif, NPPSFA, national project on protein struc functional analyses; HET: COA; 2.10A {Thermus thermophilus}
Probab=7.61 E-value=1.1e+02 Score=21.98 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=11.0
Q ss_pred CCCccCceeeccccc
Q 038380 17 QPIKYGDFFNVSGDL 31 (261)
Q Consensus 17 ~pikYgdvF~v~G~l 31 (261)
.|++|||.+.|.+.+
T Consensus 58 ~pv~~gd~l~v~~~v 72 (133)
T 2eis_A 58 RPVPLGAIVELVARL 72 (133)
T ss_dssp SCCBTTCEEEEEEEE
T ss_pred ccccCCCEEEEEEEE
Confidence 578888877777655
No 9
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex aeolicus} PDB: 2egi_A 2egr_A
Probab=7.41 E-value=1.2e+02 Score=21.43 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=12.5
Q ss_pred CCCCccCceeecccccC
Q 038380 16 QQPIKYGDFFNVSGDLA 32 (261)
Q Consensus 16 ~~pikYgdvF~v~G~la 32 (261)
..|++|||.+.|...+.
T Consensus 64 ~~~~~~gd~v~v~~~v~ 80 (128)
T 2egj_A 64 KKPLFYDDVFEVHLNLE 80 (128)
T ss_dssp CSCCCTTCEEEEEEEEE
T ss_pred cCCCcCCCEEEEEEEEE
Confidence 35888888888876653
No 10
>3emf_A HIA (adhesin); binding domain, autotransporter, trimeric, cell adhesion; 2.00A {Haemophilus influenzae}
Probab=7.06 E-value=1.7e+02 Score=23.69 Aligned_cols=38 Identities=37% Similarity=0.419 Sum_probs=30.2
Q ss_pred hhhcccccCCcccccccCCCeeEEeecCCCceeEEeee
Q 038380 71 NEGAGFVGHRDVTDVAGDQGVTVTETDVPGRRIITESV 108 (261)
Q Consensus 71 N~~~G~v~~~~~t~~a~d~GV~Vtet~vpG~RIvTE~V 108 (261)
|+-.-.|.+.+--+...+.|++|+-....|.|.||=.|
T Consensus 78 n~y~d~VknAneV~F~G~gg~~VtgkT~~g~rtITv~v 115 (116)
T 3emf_A 78 NEKSQQVKHADEVLFEGKGGVQVTSTSENGKHTITFAL 115 (116)
T ss_dssp CCEEEEEETTCEEEEEECTTCEEEEEEETTEEEEEEEC
T ss_pred cchhhhcccCcEEEEEecCceEEEEeecCCeEEEEEec
Confidence 55566777777777788899999998889999999443
Done!