Query 038380
Match_columns 261
No_of_seqs 111 out of 120
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 18:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038380.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038380hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hx6a1 b.121.2.1 (A:15-244) C 76.8 0.32 2.4E-05 40.2 0.9 14 16-29 122-135 (230)
2 d1yvca1 b.40.4.12 (A:1-69) Hyp 12.1 58 0.0042 21.5 2.3 22 1-28 1-22 (69)
3 d1h2sb_ f.17.4.1 (B:) Sensory 9.8 96 0.007 20.4 2.7 26 135-169 16-41 (60)
4 d1s7za_ a.159.3.1 (A:) B-form 9.5 18 0.0013 27.0 -1.3 11 17-27 41-51 (106)
5 d1j5wa_ d.104.1.1 (A:) Glycyl- 7.2 29 0.0021 29.9 -1.2 9 17-25 181-189 (281)
6 d2fuja1 d.38.1.1 (A:5-122) Hyp 7.1 55 0.004 22.4 0.5 16 16-31 62-77 (118)
7 d2f1da1 d.14.1.9 (A:10-95) Imi 5.8 1.1E+02 0.0078 21.8 1.5 15 135-152 71-85 (86)
8 d1l1pa_ d.26.1.1 (A:) Trigger 5.8 1.2E+02 0.0089 21.0 1.8 23 16-38 12-36 (106)
9 d1rhya1 d.14.1.9 (A:2-93) Imid 5.7 1.1E+02 0.0079 22.0 1.5 15 135-152 77-91 (92)
10 d2hx5a1 d.38.1.1 (A:1-144) Hyp 5.4 94 0.0068 21.6 1.0 16 16-31 76-91 (144)
No 1
>d1hx6a1 b.121.2.1 (A:15-244) Coat protein p3 {Bacteriophage prd1 [TaxId: 10658]}
Probab=76.77 E-value=0.32 Score=40.21 Aligned_cols=14 Identities=57% Similarity=1.004 Sum_probs=12.2
Q ss_pred CCCCccCceeeccc
Q 038380 16 QQPIKYGDFFNVSG 29 (261)
Q Consensus 16 ~~pikYgdvF~v~G 29 (261)
+.|||||||.||-.
T Consensus 122 dspikygdvmnvid 135 (230)
T d1hx6a1 122 DSPIKYGDVMNVID 135 (230)
T ss_dssp CCSSCCBSSSCSSB
T ss_pred CCCccccceeeecc
Confidence 67999999999864
No 2
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=12.09 E-value=58 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCCCCCCCccCceeecc
Q 038380 1 MSQAQPRRPGADDQQQQPIKYGDFFNVS 28 (261)
Q Consensus 1 msq~qp~r~~~~~~~~~pikYgdvF~v~ 28 (261)
|...+|+..+ -|++.|+.|.|+
T Consensus 1 ~~~~k~~~~~------~pvk~g~~~~v~ 22 (69)
T d1yvca1 1 MAFGKPAMKN------VPVEAGKEYEVT 22 (69)
T ss_dssp CCSSSSTTSC------CSSCTTCEEEEE
T ss_pred CCcccchhcc------CCCCCCCEEEEE
Confidence 5666666644 589999999875
No 3
>d1h2sb_ f.17.4.1 (B:) Sensory rhodopsin II transducer, Htr2 {Natronomonas pharaonis [TaxId: 2257]}
Probab=9.75 E-value=96 Score=20.41 Aligned_cols=26 Identities=50% Similarity=0.578 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHhhhCCCCCChhHHHHHHHHHHHh
Q 038380 135 AITIGEALETTAQTAGDKPVDQSDAAAIQAAEVRA 169 (261)
Q Consensus 135 ~ItiGealeA~a~~~g~kPV~~sDAAaiQaAE~ra 169 (261)
+|.|||+-.+++ .-||+++|.|-.++
T Consensus 16 aiaygevtaaaa---------tgdaaavqeaavsa 41 (60)
T d1h2sb_ 16 AIAYGEVTAAAA---------TGDAAAVQEAAVSA 41 (60)
T ss_dssp HHHHHHHHHHHH---------HTCHHHHHHHHHHH
T ss_pred hhhhceehHhhh---------cCcHHHHHHHHHHH
Confidence 589999987554 34789999876654
No 4
>d1s7za_ a.159.3.1 (A:) B-form DNA mimic Ocr {Bacteriophage T7 [TaxId: 10760]}
Probab=9.50 E-value=18 Score=26.96 Aligned_cols=11 Identities=45% Similarity=0.821 Sum_probs=9.7
Q ss_pred CCCccCceeec
Q 038380 17 QPIKYGDFFNV 27 (261)
Q Consensus 17 ~pikYgdvF~v 27 (261)
-|+-|+|||.|
T Consensus 41 VP~yy~diFsV 51 (106)
T d1s7za_ 41 VPHYYADIFSV 51 (106)
T ss_dssp SCCSHHHHHHH
T ss_pred CcchhhhHhhh
Confidence 49999999987
No 5
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=7.19 E-value=29 Score=29.86 Aligned_cols=9 Identities=56% Similarity=1.232 Sum_probs=7.0
Q ss_pred CCCccCcee
Q 038380 17 QPIKYGDFF 25 (261)
Q Consensus 17 ~pikYgdvF 25 (261)
+.|+|||||
T Consensus 181 ~~vtYgDvf 189 (281)
T d1j5wa_ 181 ENVKYGDVF 189 (281)
T ss_dssp TTEEHHHHH
T ss_pred CCcchHHHH
Confidence 468888887
No 6
>d2fuja1 d.38.1.1 (A:5-122) Hypothetical protein XCC1147 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=7.10 E-value=55 Score=22.40 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=13.0
Q ss_pred CCCCccCceeeccccc
Q 038380 16 QQPIKYGDFFNVSGDL 31 (261)
Q Consensus 16 ~~pikYgdvF~v~G~l 31 (261)
..|++|||.|.|.-.|
T Consensus 62 ~~~~~~~d~v~v~~~~ 77 (118)
T d2fuja1 62 KRPLVWPNDILVELFV 77 (118)
T ss_dssp CSCCCTTCCEEEEEEE
T ss_pred CccccCCCceEEEEEE
Confidence 4699999999887665
No 7
>d2f1da1 d.14.1.9 (A:10-95) Imidazole glycerol phosphate dehydratase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.81 E-value=1.1e+02 Score=21.76 Aligned_cols=15 Identities=40% Similarity=0.729 Sum_probs=12.5
Q ss_pred cchHHHHHHHHHhhhCCC
Q 038380 135 AITIGEALETTAQTAGDK 152 (261)
Q Consensus 135 ~ItiGealeA~a~~~g~k 152 (261)
.|.+|++|. .+||+|
T Consensus 71 gI~LG~al~---~ALGdk 85 (86)
T d2f1da1 71 ALAIGTALL---KALGER 85 (86)
T ss_dssp HHHHHHHHH---HHHTTC
T ss_pred HHHHHHHHH---HHhcCC
Confidence 699999999 568876
No 8
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}
Probab=5.76 E-value=1.2e+02 Score=20.99 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=18.9
Q ss_pred CCCCccCcee--ecccccCCCCCCh
Q 038380 16 QQPIKYGDFF--NVSGDLAQKPIAP 38 (261)
Q Consensus 16 ~~pikYgdvF--~v~G~la~~piaP 38 (261)
++|++.||+. +.+|.+-++++.-
T Consensus 12 dr~a~~GD~v~id~~~~~dG~~~~~ 36 (106)
T d1l1pa_ 12 DGAVEAEDRVTIDFTGSVDGEEFEG 36 (106)
T ss_dssp SSSCCTTEEEEEEEECCSSSSCCST
T ss_pred cccccCCCEEEEEEEEEECCEECCC
Confidence 5899999987 4599999988753
No 9
>d1rhya1 d.14.1.9 (A:2-93) Imidazole glycerol phosphate dehydratase {Fungus (Filobasidiella neoformans) [TaxId: 5207]}
Probab=5.72 E-value=1.1e+02 Score=21.98 Aligned_cols=15 Identities=33% Similarity=0.829 Sum_probs=12.6
Q ss_pred cchHHHHHHHHHhhhCCC
Q 038380 135 AITIGEALETTAQTAGDK 152 (261)
Q Consensus 135 ~ItiGealeA~a~~~g~k 152 (261)
.|.+|+||. .+||+|
T Consensus 77 gI~LG~al~---~ALGdk 91 (92)
T d1rhya1 77 ALALGEAFK---KALGER 91 (92)
T ss_dssp HHHHHHHHH---HHHTTC
T ss_pred HHHHHHHHH---HHhccC
Confidence 699999998 568887
No 10
>d2hx5a1 d.38.1.1 (A:1-144) Hypothetical protein PMT2055 {Prochlorococcus marinus [TaxId: 1219]}
Probab=5.43 E-value=94 Score=21.56 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=11.1
Q ss_pred CCCCccCceeeccccc
Q 038380 16 QQPIKYGDFFNVSGDL 31 (261)
Q Consensus 16 ~~pikYgdvF~v~G~l 31 (261)
..|++|||.+.|.-.+
T Consensus 76 ~~~~~~~d~i~v~~~v 91 (144)
T d2hx5a1 76 RRPIHTGDALAMELRP 91 (144)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred eccccCCcceeEEEEE
Confidence 3588888888776543
Done!