BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038384
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M4A2|SPO11_ARATH Meiotic recombination protein SPO11-1 OS=Arabidopsis thaliana
GN=SPO11-1 PE=1 SV=1
Length = 362
Score = 196 bits (498), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/166 (60%), Positives = 109/166 (65%), Gaps = 31/166 (18%)
Query: 5 DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDIL 64
+ VF RLAND +C NRCIVITGRGYPD+STRRFLRLL+EKL LP CLVDCDPYGF+IL
Sbjct: 191 ETVFQRLANDMFCKTNRCIVITGRGYPDVSTRRFLRLLMEKLHLPVHCLVDCDPYGFEIL 250
Query: 65 TTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE------------ 112
TYRFGSMQMAYD + LR P+M WLGAFPSD E Y +PK C L LT E
Sbjct: 251 ATYRFGSMQMAYDIESLRAPDMKWLGAFPSDSEVYSVPKQCLLPLTEEDKKRTEAMLLRC 310
Query: 113 -------------------GVKFEIEAFCACSFSFLSEKYIPSKIQ 139
GVKFEIEA S SFLSE YIPSKI+
Sbjct: 311 YLKREMPQWRLELETMLKRGVKFEIEALSVHSLSFLSEVYIPSKIR 356
>sp|Q9LZ03|TOP6A_ARATH DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana GN=TOP6A PE=1
SV=1
Length = 427
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 94/173 (54%), Gaps = 34/173 (19%)
Query: 1 MYIL----DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDC 56
M+IL DA + RLA D++ R CI++T +G PD++TR FLR + +L+LP LVD
Sbjct: 250 MFILLVEKDAAYMRLAEDRFYNRFPCIIVTAKGQPDVATRLFLRKMKMELKLPVLALVDS 309
Query: 57 DPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVKF 116
DPYG IL+ Y GS M+YD+ L P++ WLG PSD +KY +P+ CRL +T + +K
Sbjct: 310 DPYGLKILSVYGCGSKNMSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLPMTEQDIKT 369
Query: 117 ------------------------------EIEAFCACSFSFLSEKYIPSKIQ 139
EI+A + F +LSE Y+P K+Q
Sbjct: 370 GKDMLEEDFVKKNPGWVEELNLMVKTKQKAEIQALSSFGFQYLSEVYLPLKLQ 422
>sp|Q9WTK8|SPO11_MOUSE Meiotic recombination protein SPO11 OS=Mus musculus GN=Spo11 PE=2
SV=2
Length = 396
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 89/166 (53%), Gaps = 31/166 (18%)
Query: 5 DAVFHRLANDQYCTRNR-CIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDI 63
DA F RL +D +C+R CI++TG+G PD++TR ++ L + +P F LVD DPYG +I
Sbjct: 226 DATFQRLLDDNFCSRMSPCIMVTGKGVPDLNTRLLVKKLWDTFHIPVFTLVDADPYGIEI 285
Query: 64 LTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEG---------- 113
+ Y++GSM M+++A L IP + WLG PSD ++ +PK+ + LT
Sbjct: 286 MCIYKYGSMSMSFEAHNLTIPTIRWLGLLPSDIQRLNIPKDSLIPLTKHDQMKLDSILKR 345
Query: 114 --------------------VKFEIEAFCACSFSFLSEKYIPSKIQ 139
+K EI+A S +LS Y+P+K++
Sbjct: 346 PYITYQPLWKKELEMMADSKMKAEIQALTLLSSDYLSRVYLPNKLR 391
>sp|Q9Y5K1|SPO11_HUMAN Meiotic recombination protein SPO11 OS=Homo sapiens GN=SPO11 PE=2
SV=1
Length = 396
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 88/166 (53%), Gaps = 31/166 (18%)
Query: 5 DAVFHRLANDQYCTRNR-CIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDI 63
DA F RL +D +C + CI+ITG+G PD++TR ++ L + +P F LVD DP+G +I
Sbjct: 226 DATFQRLLDDNFCNKLSPCIMITGKGVPDLNTRLLVKKLWDTFHVPVFTLVDADPHGIEI 285
Query: 64 LTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEG---------- 113
+ Y++GSM M+++A L +P + WLG PSD ++ +PK+ + LT
Sbjct: 286 MCIYKYGSMSMSFEAHHLTVPAIRWLGLLPSDLKRLNVPKDSLIPLTKRDQMKLDSILRR 345
Query: 114 --------------------VKFEIEAFCACSFSFLSEKYIPSKIQ 139
+K EI+A S +LS Y+P+K++
Sbjct: 346 PYVTCQPFWRKEMEIMADSKMKAEIQALTFLSSDYLSRVYLPNKLK 391
>sp|Q9YE67|TOP6A_AERPE Type 2 DNA topoisomerase 6 subunit A OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=top6A PE=3 SV=2
Length = 389
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 39/174 (22%)
Query: 5 DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDIL 64
DAVF +L + + + +++TG G PD +TRRF+R L E+L+LP + + D DPYG+ I
Sbjct: 210 DAVFQQLHRAGFWKKYKALLVTGSGQPDRATRRFVRRLHEELKLPVYIITDSDPYGWYIY 269
Query: 65 TTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKY------------------------- 99
+ Y+ GS+ ++Y+++ L P+ +LG +D Y
Sbjct: 270 SVYKVGSITLSYESERLATPKAKFLGVQMTDIFGYRGKKPYLSEAERKKFMIKATDKDIK 329
Query: 100 ---------GLPKNCRLKLTVE-----GVKFEIEAFCACSFSFLSEKYIPSKIQ 139
+ KN R + + VK EIEA + F + +YIP KI+
Sbjct: 330 RAKELLNYSWIGKNRRWNVEIRLFLKHLVKLEIEAIASKGLKFFAYQYIPEKIE 383
>sp|A2BLE8|TOP6A_HYPBU Type 2 DNA topoisomerase 6 subunit A OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=top6A PE=3 SV=1
Length = 387
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 38/173 (21%)
Query: 5 DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDIL 64
DAVF +L + ++R I+IT G PD +TRRF+R L E+L LP + L D DPYG+ I
Sbjct: 209 DAVFQQLHRIGFWKKHRAILITSAGQPDRATRRFVRRLNEELGLPVYILTDADPYGWYIY 268
Query: 65 TTYRFGSMQMAYDAKFLRIPEMHWLGAFPSD----------------------------- 95
+ ++ GS+ ++Y+++ L P ++G +D
Sbjct: 269 SVFKIGSITLSYESERLATPNARFIGVSMTDIFGYKSKKPYLTEQERRNFIIKAKEADIK 328
Query: 96 --FE----KYGLPKNCRLKLTV---EGVKFEIEAFCACSFSFLSEKYIPSKIQ 139
+E K+ K ++++ + + K EIEA + FL++KY+P KI+
Sbjct: 329 RAYELKNYKWFQTKKWQIEIDIFLEKKAKLEIEAMTSKGLRFLADKYLPEKIE 381
>sp|O05208|TOP6A_SULSH Type 2 DNA topoisomerase 6 subunit A OS=Sulfolobus shibatae
GN=top6A PE=1 SV=1
Length = 389
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 38/172 (22%)
Query: 5 DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDIL 64
DAVF +L + + + I+IT G PD +TRRF+R L E+L+LP + L D DPYG+ I
Sbjct: 211 DAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELKLPVYILTDADPYGWYIF 270
Query: 65 TTYRFGSMQMAYDAKFLRIPEMHWLG---------------------------AFPSDFE 97
+ +R GS+ ++Y+++ L P+ +LG A +D +
Sbjct: 271 SVFRIGSISLSYESERLATPDAKFLGVSMGDIFGNSRKKPYLSEAERKNYIIKAKDADIK 330
Query: 98 KYGLPKN---CRLKLTVEGV--------KFEIEAFCACSFSFLSEKYIPSKI 138
+ KN + K E + K EIEA + FL+ +YIP KI
Sbjct: 331 RAEEIKNYEWFKTKAWQEEINTFLQRKAKLEIEAMASKGLKFLAFQYIPEKI 382
>sp|Q971T1|TOP6A_SULTO Type 2 DNA topoisomerase 6 subunit A OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=top6A PE=3
SV=1
Length = 387
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 38/174 (21%)
Query: 5 DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDIL 64
DAVF +L + + + I++T G PD +TRRF+R L E+L+LP + L D DPYG+ I
Sbjct: 209 DAVFQQLHRAGFWKQYKAILVTSAGQPDRATRRFVRRLNEELKLPVYILTDADPYGWYIY 268
Query: 65 TTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDF---------------EKYGL-PKNCRLK 108
+ +R GS+ ++Y+++ L P +LG +D Y + K+ +K
Sbjct: 269 SVFRIGSISLSYESERLATPNAKFLGVSMTDIFGDSNKKPYLSEQERRNYIIKAKDADIK 328
Query: 109 LTVE----------------------GVKFEIEAFCACSFSFLSEKYIPSKIQG 140
E K EIEA + FL+ +YIP KI+
Sbjct: 329 RATEIKNYQWFKTKAWQHEIEIFLNKKSKLEIEAMASKGLKFLAFQYIPEKIKS 382
>sp|Q22236|SPO11_CAEEL Meiotic recombination protein spo-11 OS=Caenorhabditis elegans
GN=spo-11 PE=3 SV=1
Length = 425
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Query: 5 DAVFHRLANDQYCTRN-RCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDI 63
D F +L ++ + R I+ T +GYPDI+TR L++L EK + P + L D DP+G +I
Sbjct: 204 DTTFQKLMDENFQAMFPRGILATSKGYPDIATRNVLKMLSEKRKFPIYGLFDADPHGIEI 263
Query: 64 LTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKN 104
TY++G + + + +P + W+G FP+DF ++ + ++
Sbjct: 264 YLTYKYGPTKEFAEGRGAFVPTIEWIGLFPTDFHRFTIDQS 304
>sp|Q9M4A1|SPO12_ARATH Meiotic recombination protein SPO11-2 OS=Arabidopsis thaliana
GN=SPO11-2 PE=1 SV=1
Length = 383
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 30/165 (18%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKL-RLPTFCLVDCDPYGFDIL 64
A+FHRL D+ C+ IT +GYPDI+TR FL + LP LVD +P G IL
Sbjct: 220 AIFHRLVEDRVFNHIPCVFITAKGYPDIATRFFLHRMSTTFPDLPILVLVDWNPAGLAIL 279
Query: 65 TTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFE---KYGL----PKNCR----------- 106
T++FGS+ M +A + + W+G D + L PK+ +
Sbjct: 280 CTFKFGSIGMGLEA-YRYACNVKWIGLRGDDLNLIPEESLVPLKPKDSQIAKSLLSSKIL 338
Query: 107 -------LKLTVE-GVKFEIEAFCACSFSFLSEKYIPSKI-QGVY 142
L L V+ G + EIEA +++L KYI +KI QG Y
Sbjct: 339 QENYIEELSLMVQTGKRAEIEALYCHGYNYLG-KYIATKIVQGKY 382
>sp|Q57815|TOP6A_METJA Type 2 DNA topoisomerase 6 subunit A OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=top6A PE=1 SV=1
Length = 369
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGF-DIL 64
+F RL +++ ++ CI+++ +G P +TRRF++ L E+ LP D DPYG+ +I
Sbjct: 200 GMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIY 259
Query: 65 TTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLP----KNCRLKLTVEGVK 115
T + GS + + A L IP +G P D Y LP K +K +G+K
Sbjct: 260 RTLKVGSGKAIHLADKLSIPAARLIGVTPQDIIDYDLPTHPLKEQDIKRIKDGLK 314
>sp|Q8U0K9|TOP6A_PYRFU Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=top6A PE=3
SV=1
Length = 382
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 38/172 (22%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILT 65
A+ RL ++Y R R ++I +G RR + L + LP D DPYG+ I +
Sbjct: 205 AMADRLIEEKYPKRERALIIATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPYGWYIYS 264
Query: 66 TYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPK---------------------- 103
T + GS+ +AY ++ L P+ ++G D ++YGL
Sbjct: 265 TIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEYGLEHVTEKLKGIPPDKKGGPTGDYKR 324
Query: 104 ---------------NCRLKLTVE-GVKFEIEAFCACSFSFLSEKYIPSKIQ 139
+LKL ++ GV+ E +A S F++++Y+P KI+
Sbjct: 325 LIEELNYPWFQNKEWQRQLKLALKWGVRIEQQALANKSLEFVAKEYLPEKIR 376
>sp|O27089|TOP6A_METTH Type 2 DNA topoisomerase 6 subunit A OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=top6A PE=3 SV=1
Length = 353
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 28/163 (17%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILT 65
+FHRL ++ + +++ +G +TRRF++ + E+L LP + D DP+GF I
Sbjct: 189 GMFHRLVQEKAYKKFDALIVGLKGQAARATRRFIKRVNEELNLPVYICNDGDPWGFHIAM 248
Query: 66 TYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKN-------CRLK---------- 108
GS ++A+ L P+ +LG SD Y LP + RLK
Sbjct: 249 VIISGSAKLAHVNHQLATPDAKFLGVTASDIINYDLPTDPLKDVDVVRLKELLQDPRYRG 308
Query: 109 ----------LTVEGVKFEIEAFCACSFSFLSEKYIPSKIQGV 141
LT+ G K E ++F ++ + Y+P K++ V
Sbjct: 309 DFWKTEIKKMLTI-GKKAEQQSFSKYGLEYVVDTYLPEKLEAV 350
>sp|Q3IPW7|TOP6A_NATPD Type 2 DNA topoisomerase 6 subunit A OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=top6A PE=3 SV=1
Length = 368
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 28/156 (17%)
Query: 10 RLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRF 69
RL + + + I++ +G P +TRR + L + L LP D DP+ + I + +
Sbjct: 208 RLVENGFDEEHNVIIVHLKGQPARATRRITKRLHDDLDLPVVVFCDGDPWSYRIYASVAY 267
Query: 70 GSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLP--------------------------- 102
GS++ A+ +++L PE ++G P+D +Y LP
Sbjct: 268 GSIKSAHLSEYLATPEAEYIGIQPADIVEYDLPTDPLSDSDINALESELDDPRFQDDYWR 327
Query: 103 KNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKI 138
+ L+L + G K E +A + F++E Y+P ++
Sbjct: 328 EQIELQLDI-GKKAEQQALASRGLDFVTETYLPERL 362
>sp|Q8TQF8|TOP6A_METAC Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=top6A PE=3 SV=2
Length = 373
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILT 65
++ RL + + I++ +G P STRR ++ + E+L +P D DP+ + I
Sbjct: 209 GMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELEIPVAVFTDGDPWSYRIYA 268
Query: 66 TYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLP----------------------- 102
+ +G+++ A+ ++F+ P +LG PSD +Y L
Sbjct: 269 SVAYGAIKSAHLSEFMATPAARFLGLQPSDIVEYELSTDKLTEQDISALRSELSDPRFES 328
Query: 103 ----KNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQ 139
+ +L+L + G K E +AF F++E Y+P++++
Sbjct: 329 EYWKEQIQLQLDI-GKKAEQQAFAGKGLDFVTEVYLPNRLK 368
>sp|O59209|TOP6A_PYRHO Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=top6A PE=3 SV=2
Length = 382
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 38/172 (22%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILT 65
A+ RL ++Y R C+++ +G RR + L + LP D DPYG+ I +
Sbjct: 205 AMADRLIEEKYPKRENCLIVATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPYGWYIYS 264
Query: 66 TYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPK---------------------- 103
T + GS+ +AY ++ L P+ ++G D ++Y L
Sbjct: 265 TIKRGSINLAYLSEKLATPDAKFVGMTMDDIKEYNLENVTEKLKGIPPDKKGGPTGDYKR 324
Query: 104 ---------------NCRLKLTVE-GVKFEIEAFCACSFSFLSEKYIPSKIQ 139
+LKL ++ GV+ E +A S F++++Y+P KI+
Sbjct: 325 LIEELNYPWFQDKEWQRQLKLALKWGVRIEQQALANKSLEFVAKEYLPEKIR 376
>sp|Q5JH82|TOP6A_PYRKO Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=top6A PE=3
SV=1
Length = 385
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 38/171 (22%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILT 65
A+ RL +++ R ++I +G RR + L + LP D DPYG+ I +
Sbjct: 208 AMADRLIEEKFPKRENALIIATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPYGWYIYS 267
Query: 66 TYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPK---------------------- 103
T + GS+ +AY + L PE ++G D +KYGL
Sbjct: 268 TIKQGSINLAYLSDKLATPESKFVGMTMDDIKKYGLENVTEKLKGIPPNKKGGPTGDYKR 327
Query: 104 ---------------NCRLKLTVE-GVKFEIEAFCACSFSFLSEKYIPSKI 138
+L+L ++ GV+ E +A S F++++Y+P KI
Sbjct: 328 ILEEMNYPWFQNKEWQRQLQLALKWGVRIEQQALANKSLEFVAKEYLPEKI 378
>sp|Q468I6|TOP6A_METBF Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=top6A PE=3 SV=1
Length = 369
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 28/161 (17%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILT 65
++ RL + + I++ +G P STRR ++ + E+L +P D DP+ + I
Sbjct: 205 GMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSYRIYA 264
Query: 66 TYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLP----------------------- 102
+ +G+++ A+ ++F+ P +LG PSD +Y L
Sbjct: 265 SVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYELSTDKLTEQDINALRSELSDPRFES 324
Query: 103 ----KNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQ 139
+ +L+L + G K E +AF +F++E Y+P++++
Sbjct: 325 DYWKEQIQLQLDI-GKKAEQQAFAGKGLNFVTEVYLPNRLK 364
>sp|Q8PUB7|TOP6A_METMA Type 2 DNA topoisomerase 6 subunit A OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=top6A PE=1 SV=1
Length = 369
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILT 65
++ RL + + I++ +G P STRR ++ + E+L +P D DP+ + I
Sbjct: 205 GMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSYRIYA 264
Query: 66 TYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLP----------------------- 102
+ +G+++ A+ ++F+ P +LG PSD +Y L
Sbjct: 265 SVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYELSTDKLTEQDVSALRSELSDPRFES 324
Query: 103 ----KNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKIQ 139
+ +L+L + G K E +AF F++E Y+P++++
Sbjct: 325 DYWKEQIQLQLDI-GKKAEQQAFAGKGLDFVTEVYLPNRLK 364
>sp|Q9V134|TOP6A_PYRAB Type 2 DNA topoisomerase 6 subunit A OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=top6A PE=3 SV=1
Length = 382
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 38/172 (22%)
Query: 6 AVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILT 65
A+ RL ++Y + C+++ +G RR + L + LP D DPYG+ I +
Sbjct: 205 AMADRLIEEKYPKKENCLIVATQGQASRGVRRLIHRLHYEEGLPIIVFTDGDPYGWYIYS 264
Query: 66 TYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPK---------------------- 103
T + GS+ +AY ++ L P+ ++G D ++Y L
Sbjct: 265 TIKQGSINLAYLSEKLATPDAKFVGMTMDDIKEYNLEHVTEKLKGIPPDKKGGPTGDYKR 324
Query: 104 ---------------NCRLKLTVE-GVKFEIEAFCACSFSFLSEKYIPSKIQ 139
+LKL ++ GV+ E +A S F++++Y+P KI+
Sbjct: 325 LIEELNYPWFQNKEWQRQLKLALKWGVRIEQQALANKSLEFVAKEYLPEKIR 376
>sp|Q5V4R4|TOP6A_HALMA Type 2 DNA topoisomerase 6 subunit A OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=top6A PE=3 SV=1
Length = 368
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 28/156 (17%)
Query: 10 RLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRF 69
RL + + +V+ G P +TRR ++ L ++L LP D DP+ + I + +
Sbjct: 208 RLVENGFDDEYDALVVHLGGQPARATRRLIKRLHDELDLPVTVFTDGDPWSYRIFGSVSY 267
Query: 70 GSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLP--------------------------- 102
GS++ A+ +++L PE ++G P D +Y LP
Sbjct: 268 GSIKSAHLSEYLATPEAQFIGIRPEDIVEYELPTDPLSDSDVNALESELEDPRFQTDFWE 327
Query: 103 KNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKI 138
+ L+L + K E +A + F++E Y+P ++
Sbjct: 328 EQIELQLDI-NKKAEQQALASRGLDFVTETYLPERL 362
>sp|Q9HR32|TOP6A_HALSA Type 2 DNA topoisomerase 6 subunit A OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=top6A PE=3
SV=1
Length = 366
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 10 RLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRF 69
RL + + IV+ G P +TRR + L ++L LP D DP+ + I + +
Sbjct: 206 RLVENGFDDDYNAIVVHLGGQPARATRRLTKRLHDELDLPVTVFTDGDPWSYRIYGSVAY 265
Query: 70 GSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLP--------------------------- 102
GS++ A+ +++L P+ ++G P D Y LP
Sbjct: 266 GSIKSAHLSEYLATPQAQFIGIRPQDIVDYDLPTDPLSDSDVNALESELEDPRFQSDFWT 325
Query: 103 KNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKI 138
+ L+L ++ K E +A + F+++ Y+P ++
Sbjct: 326 EQIGLQLDIDK-KAEQQALASRGLDFVTDTYLPERL 360
>sp|B0R4D2|TOP6A_HALS3 Type 2 DNA topoisomerase 6 subunit A OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=top6A PE=3 SV=1
Length = 366
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 10 RLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRF 69
RL + + IV+ G P +TRR + L ++L LP D DP+ + I + +
Sbjct: 206 RLVENGFDDDYNAIVVHLGGQPARATRRLTKRLHDELDLPVTVFTDGDPWSYRIYGSVAY 265
Query: 70 GSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLP--------------------------- 102
GS++ A+ +++L P+ ++G P D Y LP
Sbjct: 266 GSIKSAHLSEYLATPQAQFIGIRPQDIVDYDLPTDPLSDSDVNALESELEDPRFQSDFWT 325
Query: 103 KNCRLKLTVEGVKFEIEAFCACSFSFLSEKYIPSKI 138
+ L+L ++ K E +A + F+++ Y+P ++
Sbjct: 326 EQIGLQLDIDK-KAEQQALASRGLDFVTDTYLPERL 360
>sp|O29322|TOP6A_ARCFU Type 2 DNA topoisomerase 6 subunit A OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=top6A PE=3 SV=1
Length = 360
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 10 RLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRF 69
RL + + + I++ +G P STRR LR L +L LP D DP+ + I + +
Sbjct: 200 RLVENGFDEKYDAIIVHLKGQPARSTRRLLRRLNTELNLPVVVFTDGDPWSYRIFASVAY 259
Query: 70 GSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGVK 115
GS++ A+ +++L P ++G P+D KY LP + KLT E +K
Sbjct: 260 GSIKSAHLSEYLATPAAQFVGIRPTDIVKYDLPAD---KLTEEDIK 302
>sp|P23179|SPO11_YEAST Meiosis-specific protein SPO11 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SPO11 PE=1 SV=1
Length = 398
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 5 DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIE---KLRLPTFCLVDCDPYGF 61
+AVF +L N+ + ++ITG+G+PD TR FL+ L + KL D DPYG
Sbjct: 235 EAVFTKLVNNYHKLSTNTMLITGKGFPDFLTRLFLKKLEQYCSKLISDCSIFTDADPYGI 294
Query: 62 DILTTYRFGSMQMAY 76
I Y + + AY
Sbjct: 295 SIALNYTHSNERNAY 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,690,045
Number of Sequences: 539616
Number of extensions: 6595319
Number of successful extensions: 147166
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 974
Number of HSP's that attempted gapping in prelim test: 66453
Number of HSP's gapped (non-prelim): 35326
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)