Query 038384
Match_columns 283
No_of_seqs 268 out of 524
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00060 meiotic recombination 100.0 4.3E-44 9.3E-49 345.6 7.7 137 3-143 218-383 (384)
2 KOG2795 Catalytic subunit of t 100.0 1.5E-43 3.3E-48 337.3 5.1 141 2-142 199-370 (372)
3 PRK04342 DNA topoisomerase VI 100.0 2.8E-42 6.1E-47 331.6 6.0 141 3-144 197-366 (367)
4 COG1697 DNA topoisomerase VI, 100.0 1.6E-39 3.4E-44 308.5 5.4 137 3-141 190-355 (356)
5 cd00223 TOPRIM_TopoIIB_SPO TOP 100.0 3E-35 6.6E-40 251.8 9.2 109 3-113 7-115 (160)
6 KOG1603 Copper chaperone [Inor 99.0 4.1E-10 9E-15 85.4 5.4 46 135-180 26-72 (73)
7 PF09664 DUF2399: Protein of u 98.6 8.8E-08 1.9E-12 82.7 5.9 63 3-68 25-87 (152)
8 PF00403 HMA: Heavy-metal-asso 97.6 0.00015 3.4E-09 52.0 5.0 39 136-174 21-62 (62)
9 KOG1924 RhoA GTPase effector D 97.0 0.00098 2.1E-08 70.5 5.1 7 113-119 376-382 (1102)
10 PF09983 DUF2220: Uncharacteri 96.9 0.0015 3.4E-08 57.5 5.3 59 3-69 50-108 (181)
11 KOG1924 RhoA GTPase effector D 96.3 0.0093 2E-07 63.4 7.1 6 155-160 456-461 (1102)
12 KOG4656 Copper chaperone for s 96.3 0.0051 1.1E-07 56.5 4.5 46 136-181 29-74 (247)
13 TIGR02679 conserved hypothetic 95.8 0.02 4.4E-07 56.5 6.2 59 6-68 260-319 (385)
14 COG2608 CopZ Copper chaperone 95.1 0.044 9.6E-07 41.3 4.7 43 136-178 25-70 (71)
15 KOG2236 Uncharacterized conser 92.3 0.46 1E-05 48.1 7.4 23 150-173 340-362 (483)
16 cd00188 TOPRIM Topoisomerase-p 91.3 0.76 1.6E-05 32.5 5.8 56 4-63 8-63 (83)
17 PLN02957 copper, zinc superoxi 90.3 0.64 1.4E-05 42.7 5.8 46 136-181 28-73 (238)
18 KOG2236 Uncharacterized conser 79.5 4.6 0.0001 41.2 6.2 12 49-60 237-248 (483)
19 KOG3671 Actin regulatory prote 73.7 5.7 0.00012 41.0 5.1 10 3-12 25-34 (569)
20 PRK09752 adhesin; Provisional 67.1 6 0.00013 44.6 3.9 8 105-112 737-744 (1250)
21 KOG4166 Thiamine pyrophosphate 66.2 4 8.7E-05 41.8 2.2 145 23-178 302-495 (675)
22 KOG1923 Rac1 GTPase effector F 64.8 9.4 0.0002 41.2 4.7 7 30-36 104-110 (830)
23 PRK15319 AIDA autotransporter- 63.0 8.1 0.00017 45.4 4.0 16 149-164 1592-1607(2039)
24 PF02107 FlgH: Flagellar L-rin 61.3 5.6 0.00012 35.3 2.0 29 137-165 110-138 (179)
25 PRK09752 adhesin; Provisional 59.3 9.8 0.00021 43.0 3.8 9 150-158 838-846 (1250)
26 PF03285 Paralemmin: Paralemmi 59.2 14 0.0003 35.5 4.3 10 274-283 269-278 (278)
27 KOG4849 mRNA cleavage factor I 59.0 33 0.00072 34.4 7.0 9 132-140 113-121 (498)
28 KOG0132 RNA polymerase II C-te 59.0 30 0.00066 37.7 7.2 24 23-46 417-445 (894)
29 PF08747 DUF1788: Domain of un 55.8 34 0.00074 28.8 5.8 39 19-57 61-102 (126)
30 cd01026 TOPRIM_OLD TOPRIM_OLD: 54.9 35 0.00076 26.6 5.4 39 20-62 32-70 (97)
31 PRK08252 enoyl-CoA hydratase; 54.2 48 0.001 30.3 6.9 72 18-95 46-137 (254)
32 KOG3671 Actin regulatory prote 53.9 30 0.00064 36.0 5.9 7 62-68 94-100 (569)
33 TIGR00334 5S_RNA_mat_M5 ribonu 52.3 46 0.001 29.9 6.3 46 21-68 22-68 (174)
34 PRK10671 copA copper exporting 52.2 17 0.00038 39.0 4.2 41 136-178 26-66 (834)
35 COG3593 Predicted ATP-dependen 51.8 23 0.00051 37.2 4.9 36 32-68 434-469 (581)
36 PRK12697 flgH flagellar basal 48.9 12 0.00025 34.8 2.0 29 137-165 156-184 (226)
37 PRK12407 flgH flagellar basal 48.9 12 0.00025 34.7 2.0 28 137-164 150-177 (221)
38 PRK12698 flgH flagellar basal 48.8 12 0.00026 34.6 2.1 28 137-164 153-180 (224)
39 cd06167 LabA_like LabA_like pr 48.5 23 0.00049 29.1 3.5 31 151-181 102-132 (149)
40 KOG0391 SNF2 family DNA-depend 47.7 29 0.00063 39.9 5.0 15 236-250 1899-1913(1958)
41 PF03875 Statherin: Statherin; 47.2 23 0.0005 24.6 2.7 12 227-238 16-27 (42)
42 PRK04946 hypothetical protein; 45.7 27 0.00058 31.4 3.7 52 5-59 110-161 (181)
43 PF13732 DUF4162: Domain of un 44.8 39 0.00085 25.1 4.1 38 136-173 27-65 (84)
44 PRK12788 flgH flagellar basal 44.7 15 0.00033 34.3 2.1 27 138-164 165-191 (234)
45 PRK12701 flgH flagellar basal 44.4 15 0.00033 34.1 2.1 28 137-164 159-186 (230)
46 PRK12700 flgH flagellar basal 43.9 16 0.00035 34.0 2.1 29 137-165 160-188 (230)
47 KOG2872 Uroporphyrinogen decar 43.6 21 0.00046 34.9 2.9 28 47-75 144-171 (359)
48 PRK00249 flgH flagellar basal 43.4 17 0.00036 33.6 2.1 29 137-165 152-180 (222)
49 PF04972 BON: BON domain; Int 43.0 29 0.00063 24.6 2.9 31 138-169 14-44 (64)
50 PRK12699 flgH flagellar basal 42.9 17 0.00036 34.3 2.1 29 137-165 177-205 (246)
51 PRK12696 flgH flagellar basal 42.0 17 0.00037 33.9 2.0 28 137-164 166-193 (236)
52 PRK04017 hypothetical protein; 41.1 73 0.0016 27.4 5.5 22 47-68 65-86 (132)
53 cd03770 SR_TndX_transposase Se 40.1 41 0.0009 27.9 3.9 14 48-61 69-82 (140)
54 PF01936 NYN: NYN domain; Int 40.1 28 0.0006 28.0 2.7 29 152-180 99-127 (146)
55 KOG1830 Wiskott Aldrich syndro 39.9 47 0.001 34.0 4.8 28 125-152 153-180 (518)
56 PF13289 SIR2_2: SIR2-like dom 38.2 1E+02 0.0022 24.6 5.8 49 8-58 76-127 (143)
57 KOG1546 Metacaspase involved i 38.1 67 0.0014 31.9 5.4 17 205-221 9-25 (362)
58 PRK11023 outer membrane lipopr 37.2 55 0.0012 29.1 4.4 37 138-174 64-100 (191)
59 PF01565 FAD_binding_4: FAD bi 36.7 71 0.0015 25.7 4.7 42 137-180 52-93 (139)
60 PF12971 NAGLU_N: Alpha-N-acet 36.5 57 0.0012 25.4 3.9 45 134-180 24-73 (86)
61 PF03709 OKR_DC_1_N: Orn/Lys/A 36.3 37 0.0008 27.5 2.9 42 21-63 40-82 (115)
62 cd01027 TOPRIM_RNase_M5_like T 36.2 64 0.0014 24.9 4.1 33 35-68 34-66 (81)
63 PRK07511 enoyl-CoA hydratase; 34.7 1.9E+02 0.0041 26.4 7.6 47 46-94 97-143 (260)
64 KOG4672 Uncharacterized conser 34.4 2.8E+02 0.0061 28.5 9.1 16 167-182 262-277 (487)
65 COG0052 RpsB Ribosomal protein 34.0 27 0.00058 33.2 1.9 18 45-62 177-196 (252)
66 PRK07658 enoyl-CoA hydratase; 32.8 1.7E+02 0.0038 26.5 7.0 47 46-94 93-139 (257)
67 PF12238 MSA-2c: Merozoite sur 32.5 1.1E+02 0.0024 28.2 5.6 7 115-121 61-67 (205)
68 COG0794 GutQ Predicted sugar p 32.4 35 0.00075 31.3 2.3 32 22-54 41-72 (202)
69 PF08444 Gly_acyl_tr_C: Aralky 32.2 32 0.00069 27.7 1.8 31 27-58 33-63 (89)
70 PRK00933 ribosomal biogenesis 32.0 51 0.0011 29.1 3.3 27 23-49 1-27 (165)
71 PF05308 Mito_fiss_reg: Mitoch 31.6 54 0.0012 30.9 3.6 21 27-47 6-26 (253)
72 PRK06849 hypothetical protein; 30.3 1E+02 0.0023 29.6 5.4 44 21-68 5-48 (389)
73 COG4069 Uncharacterized protei 30.3 37 0.00081 33.3 2.3 32 41-72 283-314 (367)
74 PF07085 DRTGG: DRTGG domain; 30.0 75 0.0016 24.9 3.7 35 20-59 62-96 (105)
75 PLN02591 tryptophan synthase 30.0 1.2E+02 0.0027 28.3 5.7 23 36-58 67-89 (250)
76 PF01213 CAP_N: Adenylate cycl 29.9 17 0.00038 35.2 0.0 14 134-147 136-149 (312)
77 COG1658 Small primase-like pro 29.5 1.2E+02 0.0026 25.8 5.0 45 22-68 32-76 (127)
78 PF01213 CAP_N: Adenylate cycl 28.3 19 0.00042 34.9 0.0 35 125-169 126-160 (312)
79 PF13707 RloB: RloB-like prote 28.2 1.2E+02 0.0025 25.9 4.8 52 6-57 13-70 (183)
80 PF02680 DUF211: Uncharacteriz 27.8 53 0.0011 26.9 2.4 38 136-173 27-72 (95)
81 cd03365 TOPRIM_TopoIIA TOPRIM_ 27.0 41 0.00089 28.5 1.7 17 49-65 79-95 (120)
82 KOG2675 Adenylate cyclase-asso 26.5 52 0.0011 33.7 2.6 13 135-147 141-153 (480)
83 KOG1945 Protein phosphatase 1 26.4 43 0.00092 33.4 2.0 15 240-254 44-58 (377)
84 COG2063 FlgH Flagellar basal b 26.0 42 0.00092 31.4 1.8 28 137-164 163-190 (230)
85 smart00775 LNS2 LNS2 domain. T 26.0 1.4E+02 0.003 25.5 4.8 34 7-44 35-69 (157)
86 cd01030 TOPRIM_TopoIIA_like TO 26.0 44 0.00095 28.1 1.7 17 49-65 75-91 (115)
87 PF04834 Adeno_E3_14_5: Early 25.4 77 0.0017 26.1 3.0 10 222-231 54-63 (97)
88 COG1888 Uncharacterized protei 24.9 1.2E+02 0.0025 24.9 3.9 33 143-175 43-76 (97)
89 PRK15313 autotransport protein 24.8 90 0.0019 34.8 4.2 14 149-162 485-498 (955)
90 cd01567 NAPRTase_PncB Nicotina 24.8 2.9E+02 0.0063 26.5 7.3 100 31-173 216-317 (343)
91 PRK07396 dihydroxynaphthoic ac 24.4 2.9E+02 0.0063 25.5 7.1 43 46-94 106-152 (273)
92 KOG2675 Adenylate cyclase-asso 24.2 83 0.0018 32.3 3.6 23 126-156 131-153 (480)
93 PF05193 Peptidase_M16_C: Pept 24.0 77 0.0017 25.3 2.8 19 152-170 21-39 (184)
94 KOG2780 Ribosome biogenesis pr 23.9 4.7E+02 0.01 25.5 8.3 57 21-79 97-157 (302)
95 PF05959 DUF884: Nucleopolyhed 23.4 91 0.002 28.3 3.4 38 136-174 129-170 (186)
96 TIGR00729 ribonuclease H, mamm 23.2 73 0.0016 28.6 2.8 15 27-41 167-182 (206)
97 PRK07854 enoyl-CoA hydratase; 23.2 3.3E+02 0.0072 24.7 7.1 73 19-94 43-131 (243)
98 PRK09428 pssA phosphatidylseri 22.8 1.6E+02 0.0034 30.0 5.2 52 5-56 34-89 (451)
99 PF00117 GATase: Glutamine ami 22.7 1.8E+02 0.004 24.7 5.1 47 19-70 42-91 (192)
100 TIGR01628 PABP-1234 polyadenyl 22.7 3E+02 0.0064 27.9 7.3 11 162-172 300-310 (562)
101 KOG4849 mRNA cleavage factor I 22.6 4E+02 0.0087 27.0 7.8 9 113-121 136-144 (498)
102 PF11760 CbiG_N: Cobalamin syn 22.5 1.2E+02 0.0025 24.2 3.5 47 8-57 1-47 (84)
103 KOG4590 Signal transduction pr 22.5 1.2E+02 0.0027 30.6 4.4 11 85-95 33-43 (409)
104 PF11644 DUF3256: Protein of u 22.4 8.3 0.00018 35.2 -3.5 62 86-147 2-78 (199)
105 PRK11023 outer membrane lipopr 22.4 1.1E+02 0.0024 27.2 3.7 28 141-169 144-171 (191)
106 PF13155 Toprim_2: Toprim-like 22.3 3E+02 0.0066 20.6 5.7 64 3-68 2-68 (96)
107 cd03366 TOPRIM_TopoIIA_GyrB TO 22.2 58 0.0013 27.4 1.8 17 49-65 74-90 (114)
108 PF13098 Thioredoxin_2: Thiore 22.0 99 0.0022 23.6 3.0 23 146-168 89-112 (112)
109 PRK06688 enoyl-CoA hydratase; 22.0 3.5E+02 0.0076 24.4 7.0 47 46-94 95-141 (259)
110 smart00493 TOPRIM topoisomeras 21.4 2.5E+02 0.0055 20.0 4.9 32 34-65 33-65 (76)
111 PF01949 DUF99: Protein of unk 21.3 98 0.0021 27.9 3.2 53 9-62 54-108 (187)
112 PRK10671 copA copper exporting 21.3 1.3E+02 0.0028 32.5 4.5 45 135-179 121-165 (834)
113 cd04516 TBP_eukaryotes eukaryo 21.3 1.6E+02 0.0035 26.0 4.5 56 113-170 104-166 (174)
114 TIGR00619 sbcd exonuclease Sbc 21.2 1.7E+02 0.0037 26.8 4.8 48 6-53 26-81 (253)
115 cd04886 ACT_ThrD-II-like C-ter 20.9 2.8E+02 0.006 18.8 4.9 23 153-175 49-71 (73)
116 PRK09076 enoyl-CoA hydratase; 20.8 4.8E+02 0.01 23.8 7.7 47 46-94 94-140 (258)
117 PF13774 Longin: Regulated-SNA 20.8 23 0.00049 26.8 -0.9 26 21-46 35-60 (83)
118 KOG3397 Acetyltransferases [Ge 20.4 1.1E+02 0.0024 28.1 3.3 16 191-206 121-137 (225)
119 PRK11198 LysM domain/BON super 20.4 97 0.0021 26.4 2.8 28 144-171 45-72 (147)
120 cd01745 GATase1_2 Subgroup of 20.4 2.4E+02 0.0051 24.6 5.3 33 35-72 89-121 (189)
121 cd07380 MPP_CWF19_N Schizosacc 20.3 1.1E+02 0.0025 26.2 3.3 64 4-68 10-77 (150)
122 PRK08139 enoyl-CoA hydratase; 20.3 5E+02 0.011 23.8 7.7 42 46-93 103-148 (266)
123 PRK06144 enoyl-CoA hydratase; 20.2 4.5E+02 0.0097 24.1 7.4 48 46-94 101-148 (262)
124 TIGR01628 PABP-1234 polyadenyl 20.2 3.7E+02 0.0081 27.2 7.4 17 153-169 331-347 (562)
125 PF01886 DUF61: Protein of unk 20.1 2.4E+02 0.0052 24.1 5.1 62 113-180 44-111 (132)
126 cd01748 GATase1_IGP_Synthase T 20.1 1.4E+02 0.003 26.0 3.8 43 20-67 37-87 (198)
127 PRK08138 enoyl-CoA hydratase; 20.0 4.4E+02 0.0096 24.0 7.3 43 46-94 97-143 (261)
No 1
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=100.00 E-value=4.3e-44 Score=345.61 Aligned_cols=137 Identities=36% Similarity=0.660 Sum_probs=129.5
Q ss_pred chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhc-CCcEEEEecCCccchhHHHHhhhcccccccccccc
Q 038384 3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKL-RLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFL 81 (283)
Q Consensus 3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~-~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l 81 (283)
||||||+||++++|+++.+|||||||||||++||+||++|++++ ++|||+|||+||||++||+||||||.+++|+++.+
T Consensus 218 EKeavF~rL~e~~~~~~~~cILITgKGyPD~aTR~fL~~L~~~~p~lPv~~LvD~DP~Gi~I~~tYkyGS~~~a~es~~l 297 (384)
T PLN00060 218 EKDAIFQRLAEDRFFNHIPCILITAKGYPDLATRFILHRLSQTFPNLPILALVDWNPAGLAILCTYKFGSIGMGLEAYRY 297 (384)
T ss_pred ecHHHHHHHHHhhhhhhCCEEEEecCCCCCHHHHHHHHHHHHhcCCCCEEEEECCCcchHHHHHHhhcCchhhhhccccc
Confidence 89999999999999999999999999999999999999999996 89999999999999999999999999999999999
Q ss_pred CCCCceeeccCcccccccCCCCcccccCChh----------------------------hhHHHHHHHhhcCcccccccc
Q 038384 82 RIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE----------------------------GVKFEIEAFCACSFSFLSEKY 133 (283)
Q Consensus 82 ~~P~l~WLGv~~~Di~~~~l~~~~llpLt~r----------------------------~~KaEIEAL~~~~~~fl~~~Y 133 (283)
+|+ ++||||+++|+.. ++.+.+++||.| ++|+|||||+++|++||++ |
T Consensus 298 a~~-i~WLGl~~sDi~~--l~~~~~i~Lt~rD~~~~~~lL~~~~~~~~w~~EL~~Ml~~~~KaEiEAL~~~g~~fl~~-Y 373 (384)
T PLN00060 298 ACN-VKWLGLRGDDLQL--IPPEAFVELKPRDLQIAKSLLSSKFLQNRYREELTLMVQTGKRAEIEALYSHGYDYLGK-Y 373 (384)
T ss_pred ccC-CeEecCCHHHHhc--CCHhhcCCCCHHHHHHHHHHhhChhHHHHHHHHHHHHHHhCcchhhHhHHhcChHHHHH-H
Confidence 885 9999999999985 778888999887 8899999999999999995 9
Q ss_pred ccccccCeeE
Q 038384 134 IPSKIQGVYS 143 (283)
Q Consensus 134 Lp~KI~GV~s 143 (283)
||+||..-++
T Consensus 374 lp~Ki~~~~~ 383 (384)
T PLN00060 374 VARKIVQGDY 383 (384)
T ss_pred HHHHHhcCCc
Confidence 9999987653
No 2
>KOG2795 consensus Catalytic subunit of the meiotic double strand break transesterase [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-43 Score=337.29 Aligned_cols=141 Identities=47% Similarity=0.835 Sum_probs=135.3
Q ss_pred cchhhHHHHHHhcccccCC-ceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhhccccccccccc
Q 038384 2 YILDAVFHRLANDQYCTRN-RCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKF 80 (283)
Q Consensus 2 ~~KdAVF~~L~~~~f~~~~-~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~ 80 (283)
-|||||||||+++.|.+++ +|||||||||||++||.||++|++++++||+||||+|||||+|+++|||||++|+||++.
T Consensus 199 VEKeavFqrL~~d~~~~~~~~~ilITgKGyPD~~TR~fLkkL~~~~~lpv~~LvDaDP~Gi~I~~~Yk~GS~~ms~e~~~ 278 (372)
T KOG2795|consen 199 VEKEAVFQRLAEDNFFNTFNRCILITGKGYPDIATRLFLKKLEEKLKLPVYGLVDADPYGIEILLTYKYGSKSMSYESHG 278 (372)
T ss_pred EehHHHHHHHHHHHHHhhcCCeEEEecCCCCcHHHHHHHHHHHHHhCCCEEEEeecCCcceEEEEEeeeCcccccccccc
Confidence 3899999999999999988 799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeccCcccccccCCCCcccccCChh------------------------------hhHHHHHHHhhcCccccc
Q 038384 81 LRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE------------------------------GVKFEIEAFCACSFSFLS 130 (283)
Q Consensus 81 l~~P~l~WLGv~~~Di~~~~l~~~~llpLt~r------------------------------~~KaEIEAL~~~~~~fl~ 130 (283)
+++|.++|+|++++|+..++.+++++++|+.+ ++|+|||||+.+|.+|+.
T Consensus 279 ~~~p~I~wiGl~psD~~~~n~~k~~~lpL~~~D~k~i~~lL~~~~l~~~p~~r~el~~ml~~~~KaEieal~~~~~~~~~ 358 (372)
T KOG2795|consen 279 LTVPTIRWIGLLPSDLEVKNIPKDQLLPLNKRDIKKIKDLLARLILQKEPVVREELERMLKNKVKAEIEALSFFGSDYLS 358 (372)
T ss_pred ccCCcceEEeechhhhhhcCCchheeecccHHHHHHHHHHHhhhhcccChhHHHHHHHHHhcchhhhhhhhhhcchHHHh
Confidence 99999999999999999999999999999888 579999999999999999
Q ss_pred cccccccccCee
Q 038384 131 EKYIPSKIQGVY 142 (283)
Q Consensus 131 ~~YLp~KI~GV~ 142 (283)
+.||+.|++-..
T Consensus 359 ~~yia~k~~~~~ 370 (372)
T KOG2795|consen 359 RVYIARKLERIS 370 (372)
T ss_pred hhhhhHHHhhcc
Confidence 999999997543
No 3
>PRK04342 DNA topoisomerase VI subunit A; Provisional
Probab=100.00 E-value=2.8e-42 Score=331.60 Aligned_cols=141 Identities=28% Similarity=0.556 Sum_probs=134.1
Q ss_pred chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhhccccccccccccC
Q 038384 3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLR 82 (283)
Q Consensus 3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~ 82 (283)
||||||++|++++|+++.+|||||||||||++||+||++|++++++|||+|+|+||||++|+++|||||.+++|+++.++
T Consensus 197 EK~avF~rL~~~~~~~~~~~IlItgkG~Pd~~TR~fl~~L~~~~~lpv~~l~D~DP~G~~I~~tyk~GS~~~a~~s~~l~ 276 (367)
T PRK04342 197 EKGGMFQRLVEEGFWKKYNAILVHLKGQPARATRRFIKRLNEELGLPVYVFTDGDPWGYYIYSVVKYGSIKLAHLSERLA 276 (367)
T ss_pred echHHHHHHHHhCcccccCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHhCchhhhhhhhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCcccccccCCCCcccccCChh-----------------------------hhHHHHHHHhhcCcccccccc
Q 038384 83 IPEMHWLGAFPSDFEKYGLPKNCRLKLTVE-----------------------------GVKFEIEAFCACSFSFLSEKY 133 (283)
Q Consensus 83 ~P~l~WLGv~~~Di~~~~l~~~~llpLt~r-----------------------------~~KaEIEAL~~~~~~fl~~~Y 133 (283)
||+++|+||+++|+.++ ++..++++||.+ ++|+|||||+++|++|++++|
T Consensus 277 ~P~~kwlGl~~sDi~~~-~~~~~~~~Lt~~D~~~l~~lL~~~~~~~~~w~~El~~ml~~~~KaEiEal~~~~~~~~~~~Y 355 (367)
T PRK04342 277 TPDAKFIGVTPSDIVEY-ERDLPTIKLKDSDIKRAKELLNYPWFQTDFWQKEINLFLKIGKKAEQQALASKGLKFVTDEY 355 (367)
T ss_pred CCCCEEecCcHHHHHhh-ccccccCCCCHHHHHHHHHHhcCccccCHHHHHHHHHHHHhCCceeeehhhhcChhhhHHHH
Confidence 99999999999999887 667788899876 889999999999999999999
Q ss_pred ccccccCeeEE
Q 038384 134 IPSKIQGVYSV 144 (283)
Q Consensus 134 Lp~KI~GV~sv 144 (283)
||+||+.-+++
T Consensus 356 lp~Ki~~~~~i 366 (367)
T PRK04342 356 LPEKLEEKDWL 366 (367)
T ss_pred HHHHHhcCCCC
Confidence 99999876554
No 4
>COG1697 DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-39 Score=308.47 Aligned_cols=137 Identities=36% Similarity=0.682 Sum_probs=129.0
Q ss_pred chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhhccccccccccccC
Q 038384 3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLR 82 (283)
Q Consensus 3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~ 82 (283)
||+|||+||++++||++.+|||||||||||++||+||++|++++++||++|+|+||||+.||++|+|||.++||+++.++
T Consensus 190 Ek~avf~rLv~e~~~~k~nailVt~KGqP~raTRrflkrL~eel~lpv~vftDgDPyG~~Iy~~~k~GS~k~ah~se~la 269 (356)
T COG1697 190 EKDAVFQRLVEEGFWEKENAILVTLKGQPDRATRRFLKRLNEELDLPVYVFTDGDPYGWYIYSVYKYGSIKLAHESERLA 269 (356)
T ss_pred echHHHHHHHHhhhhhhcCeEEEecCCCccHHHHHHHHHHHHHhCCCEEEEecCCCCEEEEEEEEEecchhhhhcchhhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCcccccccCCCCcccccCChh-----------------------------hhHHHHHHHhhcCcccccccc
Q 038384 83 IPEMHWLGAFPSDFEKYGLPKNCRLKLTVE-----------------------------GVKFEIEAFCACSFSFLSEKY 133 (283)
Q Consensus 83 ~P~l~WLGv~~~Di~~~~l~~~~llpLt~r-----------------------------~~KaEIEAL~~~~~~fl~~~Y 133 (283)
+|.++++||+++||..++++ ...+|+++ ++|+|+|||+++|++|+.+.|
T Consensus 270 tp~akflGv~~~DI~~ynl~--~t~~l~~~Dik~lk~ll~~~~f~~~~W~~el~~~l~i~kK~E~qAla~kgl~~v~~~y 347 (356)
T COG1697 270 TPDAKFLGVTMQDIVEYNLP--QTDKLKDRDIKRLKELLRDPRFQKEFWKEELKLLLKIGKKAEQQALASKGLEFVAKTY 347 (356)
T ss_pred CCcceeeeccHHHHhhcccc--ccccchhhhHHHHHHHhccccccchhHHHHHHHHHHHhHHHHHHHHHhcChHHhHHhh
Confidence 99999999999999999887 33444433 899999999999999999999
Q ss_pred ccccccCe
Q 038384 134 IPSKIQGV 141 (283)
Q Consensus 134 Lp~KI~GV 141 (283)
|+.||...
T Consensus 348 lpeki~e~ 355 (356)
T COG1697 348 LPEKIEEL 355 (356)
T ss_pred hHHHHhcc
Confidence 99999753
No 5
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=100.00 E-value=3e-35 Score=251.81 Aligned_cols=109 Identities=50% Similarity=0.915 Sum_probs=101.4
Q ss_pred chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhhccccccccccccC
Q 038384 3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLR 82 (283)
Q Consensus 3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~ 82 (283)
||+|||++|+++++++..+|||||||||||++||+||++|++++++|+|+|+|+||||++|+++|++||.+++|++..++
T Consensus 7 Ek~avf~~L~~~~~~~~~~~ilit~kG~P~~~tr~~l~~L~~~~~~~~~~l~D~DP~Gi~I~~~y~~gs~~~~~~~~~~~ 86 (160)
T cd00223 7 EKEAVFQRLIEEGFHERNNCILITGKGYPDRATRRFLRRLHEELDLPVYILVDGDPYGISILLTYKYGSIKLAYESESLA 86 (160)
T ss_pred ecHHHHHHHHHcCccccCCEEEEEcCCcCCHHHHHHHHHHHHhhCCCEEEEECCCcchhhhhHHHHhCcccccccccccc
Confidence 89999999999999988899999999999999999999999988999999999999999999999999999999999899
Q ss_pred CCCceeeccCcccccccCCCCcccccCChhh
Q 038384 83 IPEMHWLGAFPSDFEKYGLPKNCRLKLTVEG 113 (283)
Q Consensus 83 ~P~l~WLGv~~~Di~~~~l~~~~llpLt~r~ 113 (283)
+|+++|+|++++|+.+ ++...+++||.++
T Consensus 87 ~~~l~~~G~~~~d~~~--~~~~~~~~Ls~~d 115 (160)
T cd00223 87 TPDLRWLGLRPSDIIR--LPDLPLLPLSERD 115 (160)
T ss_pred CCCcEEccCCHHHHhh--ccccccCCCCHHH
Confidence 9999999999999975 3456677787773
No 6
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.02 E-value=4.1e-10 Score=85.41 Aligned_cols=46 Identities=39% Similarity=0.592 Sum_probs=42.7
Q ss_pred cccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcC-Cceeeecc
Q 038384 135 PSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNG-RHAEFSCL 180 (283)
Q Consensus 135 p~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~G-K~Ae~w~~ 180 (283)
.++++||++++||.++++|||+|++||..|+++|+|+| |++++|..
T Consensus 26 l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~~ 72 (73)
T KOG1603|consen 26 LQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWKV 72 (73)
T ss_pred hhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEecC
Confidence 46799999999999999999999999999999999988 99999953
No 7
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=98.58 E-value=8.8e-08 Score=82.72 Aligned_cols=63 Identities=25% Similarity=0.301 Sum_probs=55.2
Q ss_pred chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
|..+||.++++.- ....+.|||+.|+|+.+++.||.+|... +.++++-.|+||.||.|+...+
T Consensus 25 ENp~Vf~~~~~~~--~~~~~pLVCt~G~p~~A~~~LL~~L~~~-g~~l~y~GDfDp~Gl~IA~~l~ 87 (152)
T PF09664_consen 25 ENPAVFSALADEL--GASCPPLVCTSGQPSAAARRLLDRLAAA-GARLYYSGDFDPEGLRIANRLI 87 (152)
T ss_pred ecHHHHHHHHHhc--CCCCCeEEEcCCcHHHHHHHHHHHHHhC-CCEEEEecCCCHHHHHHHHHHH
Confidence 6789999999982 1245689999999999999999999544 8999999999999999999986
No 8
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=97.56 E-value=0.00015 Score=52.03 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=35.5
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccCh---HHHHHHHHHcCCc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNP---NTMLRILDKNGRH 174 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp---~~vlkkl~k~GK~ 174 (283)
++++||.+++||...++|+|+++-+. +.|+++|+++|++
T Consensus 21 ~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 21 SKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp HTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred hcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 56999999999999999999999665 9999999999974
No 9
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.95 E-value=0.00098 Score=70.50 Aligned_cols=7 Identities=14% Similarity=0.591 Sum_probs=3.4
Q ss_pred hhHHHHH
Q 038384 113 GVKFEIE 119 (283)
Q Consensus 113 ~~KaEIE 119 (283)
++++|+.
T Consensus 376 dir~emD 382 (1102)
T KOG1924|consen 376 DIRAEMD 382 (1102)
T ss_pred hhhhhhc
Confidence 4555544
No 10
>PF09983 DUF2220: Uncharacterized protein conserved in bacteria C-term(DUF2220); InterPro: IPR024534 This is a domain of unknown function that is found predominantly in hypothetical bacterial proteins.
Probab=96.91 E-value=0.0015 Score=57.47 Aligned_cols=59 Identities=36% Similarity=0.473 Sum_probs=49.1
Q ss_pred chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhh
Q 038384 3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRF 69 (283)
Q Consensus 3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~ 69 (283)
|-.+.|.++.+.. ..++|-|.||+-..+++|++.+... +++.+.|-|++|+.|+...+.
T Consensus 50 EN~~tf~~~~~~~-----~~~~Iyg~G~~~~~~~~~~~~~~~~---~~~ywGDiD~~G~~I~~~lr~ 108 (181)
T PF09983_consen 50 ENLTTFYSLPELP-----NGLVIYGGGFAISSSRRFLKWLQPK---PVYYWGDIDPGGLRILERLRR 108 (181)
T ss_pred eCHHHHHHHHhcC-----CeEEEECCCcCcHHHHHHHhhcCCC---ceEEeccCCHhHHHHHHHHHH
Confidence 3457788877433 5799999999999999998866543 999999999999999998864
No 11
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.32 E-value=0.0093 Score=63.42 Aligned_cols=6 Identities=0% Similarity=0.374 Sum_probs=2.5
Q ss_pred EeeccC
Q 038384 155 ISGKVN 160 (283)
Q Consensus 155 VtG~Vd 160 (283)
+++.||
T Consensus 456 ~~~liD 461 (1102)
T KOG1924|consen 456 LTELID 461 (1102)
T ss_pred HHHHHH
Confidence 344444
No 12
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.0051 Score=56.48 Aligned_cols=46 Identities=26% Similarity=0.437 Sum_probs=42.0
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeeccc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLE 181 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~~ 181 (283)
+-+.|+.+|+||.++|.|.|-+.+-+.++..+|+.+||+|.|-..-
T Consensus 29 ~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G 74 (247)
T KOG4656|consen 29 KGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAG 74 (247)
T ss_pred ccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCC
Confidence 3477888999999999999999999999999999999999997644
No 13
>TIGR02679 conserved hypothetical protein TIGR02679. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=95.75 E-value=0.02 Score=56.48 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=48.4
Q ss_pred hHHHHHHhcccccCCce-EEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 6 AVFHRLANDQYCTRNRC-IVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 6 AVF~~L~~~~f~~~~~c-ILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
+||..+++..-. .| .||+.-|||..+++.||++|.+. +..+++=.|+|+-||.|+...+
T Consensus 260 ~vf~~~~~~~~~---~~~~lIct~G~p~~a~~~LL~~L~~~-g~~l~YhGDfD~~Gi~Ia~~L~ 319 (385)
T TIGR02679 260 NVLAIALDRLGP---RCAPLVCTDGQPNAAQIKLLDLLAAA-GARLYYHGDFDWPGLRIANGLI 319 (385)
T ss_pred HHHHHHHHhcCC---CCceEEECCCcchHHHHHHHHHHHhc-CCeEEEecCCChhHHHHHHHHH
Confidence 688888875422 23 79999999999999999999876 4455666999999999998876
No 14
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=95.06 E-value=0.044 Score=41.31 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=37.5
Q ss_pred ccccCeeEEEEeCCC--CeEEEee-ccChHHHHHHHHHcCCceeee
Q 038384 136 SKIQGVYSVVIDAEK--GTVNISG-KVNPNTMLRILDKNGRHAEFS 178 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~--~kVtVtG-~Vdp~~vlkkl~k~GK~Ae~w 178 (283)
++++||.+++||.+. .+|++.+ .++.+.+++.+.++|=+++.+
T Consensus 25 ~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 25 EEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred hcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 569999999999999 6677778 699999999999999877654
No 15
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=0.46 Score=48.12 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=16.1
Q ss_pred CCeEEEeeccChHHHHHHHHHcCC
Q 038384 150 KGTVNISGKVNPNTMLRILDKNGR 173 (283)
Q Consensus 150 ~~kVtVtG~Vdp~~vlkkl~k~GK 173 (283)
..|+-+.++ |+.++...+.+.-+
T Consensus 340 r~~~k~~~n-d~~~~~~~~~~ean 362 (483)
T KOG2236|consen 340 RSKVKFSDN-DPVKVKTEVEGEAN 362 (483)
T ss_pred ccccccccC-CCCccccccccccc
Confidence 456777888 88888777765444
No 16
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=91.27 E-value=0.76 Score=32.47 Aligned_cols=56 Identities=21% Similarity=0.092 Sum_probs=40.0
Q ss_pred hhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhH
Q 038384 4 LDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDI 63 (283)
Q Consensus 4 KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I 63 (283)
.++....|.+.++. .+.++...|.....++.++..+... ..+|+.++|.|..|..+
T Consensus 8 g~~d~~~l~~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~-~~~v~i~~D~D~~g~~~ 63 (83)
T cd00188 8 GPSDALALAQAGGY---GGAVVALGGHALNKTRELLKRLLGE-AKEVIIATDADREGEAI 63 (83)
T ss_pred cHHHHHHHHHHcCC---CEEEEEEccEEcHHHHHHHHHHhcC-CCEEEEEcCCChhHHHH
Confidence 34444555555443 4667888888887777777777654 58999999999999833
No 17
>PLN02957 copper, zinc superoxide dismutase
Probab=90.27 E-value=0.64 Score=42.71 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=42.2
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeeccc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLE 181 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~~ 181 (283)
.+++||.++.+|...++++|.+.++...+++.+.+.|..++++...
T Consensus 28 ~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~ 73 (238)
T PLN02957 28 ETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQG 73 (238)
T ss_pred hcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCC
Confidence 5688999999999999999999999999999999999999998764
No 18
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.45 E-value=4.6 Score=41.15 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=8.5
Q ss_pred cEEEEecCCccc
Q 038384 49 PTFCLVDCDPYG 60 (283)
Q Consensus 49 pi~~L~D~DP~G 60 (283)
-|++|-|--+-|
T Consensus 237 Svlf~edR~~lG 248 (483)
T KOG2236|consen 237 SVLFLEDRTALG 248 (483)
T ss_pred ceEEeeccccch
Confidence 567777777777
No 19
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=73.70 E-value=5.7 Score=41.02 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=6.7
Q ss_pred chhhHHHHHH
Q 038384 3 ILDAVFHRLA 12 (283)
Q Consensus 3 ~KdAVF~~L~ 12 (283)
+||+||.-|=
T Consensus 25 ene~lf~~lg 34 (569)
T KOG3671|consen 25 ENETLFKLLG 34 (569)
T ss_pred HHHHHHHHhc
Confidence 5777776653
No 20
>PRK09752 adhesin; Provisional
Probab=67.07 E-value=6 Score=44.56 Aligned_cols=8 Identities=38% Similarity=0.381 Sum_probs=3.2
Q ss_pred ccccCChh
Q 038384 105 CRLKLTVE 112 (283)
Q Consensus 105 ~llpLt~r 112 (283)
.+|.|+..
T Consensus 737 ~~~~~~~~ 744 (1250)
T PRK09752 737 TVLRLTGQ 744 (1250)
T ss_pred cEEEeccc
Confidence 33444433
No 21
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=66.19 E-value=4 Score=41.84 Aligned_cols=145 Identities=17% Similarity=0.243 Sum_probs=74.4
Q ss_pred EEEecCccCCh-HHHHHHHHHHHhcCCcE------EEEecCCccchhHHHHhhhccc--cccccccccCCCCceeeccCc
Q 038384 23 IVITGRGYPDI-STRRFLRLLIEKLRLPT------FCLVDCDPYGFDILTTYRFGSM--QMAYDAKFLRIPEMHWLGAFP 93 (283)
Q Consensus 23 ILITGKGyPD~-aTR~fL~~L~~~~~lpi------~~L~D~DP~Gi~I~~tYk~GS~--~~a~es~~l~~P~l~WLGv~~ 93 (283)
+|-+|.|-=.. -.-++|+++++..+||| +|-+|+|-. ++.-+.=++|+. +++-+..+ -+--+|+|.
T Consensus 302 VlyvG~G~Ln~~d~p~lL~~fser~qIPVtttL~GLGs~d~~d~-lSLhMLGMHG~~yAN~Avq~aD----LilA~GvRF 376 (675)
T KOG4166|consen 302 VLYVGGGCLNSSDGPRLLGRFSERTQIPVTTTLMGLGSYDCDDE-LSLHMLGMHGTVYANYAVQHAD----LILAFGVRF 376 (675)
T ss_pred eEEeCcccccCCcchHHHHHHHHhhcCcceehhhcccCcCCCCc-hhhhhhcccccceehhhhhccc----eeEEeccee
Confidence 56667663221 12458999999888886 344565421 233333344443 33333322 244568888
Q ss_pred ccccccCCCC---c------------ccccCChh--------------hhHHHHHHHhhcCccccccccccccccCeeEE
Q 038384 94 SDFEKYGLPK---N------------CRLKLTVE--------------GVKFEIEAFCACSFSFLSEKYIPSKIQGVYSV 144 (283)
Q Consensus 94 ~Di~~~~l~~---~------------~llpLt~r--------------~~KaEIEAL~~~~~~fl~~~YLp~KI~GV~sv 144 (283)
.|=..-+++. + -...++.. |+|..++.|.+--.++ =++.|++...
T Consensus 377 DDRVTGn~s~FAp~Ar~aaae~rggIiHfdispknIgKvvqp~~aveGDv~~~L~~m~s~~kn~----~~~~r~dW~~-- 450 (675)
T KOG4166|consen 377 DDRVTGNLSAFAPRARRAAAEGRGGIIHFDISPKNIGKVVQPHVAVEGDVKLALQGMNSVLKNR----AEELRLDWRN-- 450 (675)
T ss_pred ccccccchhhhChhhhhhhhcccCceEEEecCHHHhCcccCcceeeeccHHHHHHHHHhHhhcc----cchhhhhHHH--
Confidence 7744322211 0 00011111 7777777775522222 2345555443
Q ss_pred EEeCCCCe--EEEe-----eccChHHHHHHHHH----cCCceeee
Q 038384 145 VIDAEKGT--VNIS-----GKVNPNTMLRILDK----NGRHAEFS 178 (283)
Q Consensus 145 ~ID~~~~k--VtVt-----G~Vdp~~vlkkl~k----~GK~Ae~w 178 (283)
+|+..++| .+-+ -.|.|+.|||+|.| +|+|+-+-
T Consensus 451 qin~wK~~fP~sf~~~tpGe~ikPQ~vIk~Ldk~t~d~~~kviit 495 (675)
T KOG4166|consen 451 QINVWKQKFPLSFKEETPGEAIKPQYVIKVLDKLTDDTGRKVIIT 495 (675)
T ss_pred HHHHHHHhCCeeeeccCCccccChHHHHHHHHHhccCcCceEEEe
Confidence 33444444 3322 34899999999976 67777654
No 22
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=64.83 E-value=9.4 Score=41.23 Aligned_cols=7 Identities=43% Similarity=0.567 Sum_probs=2.7
Q ss_pred cCChHHH
Q 038384 30 YPDISTR 36 (283)
Q Consensus 30 yPD~aTR 36 (283)
.+|..-|
T Consensus 104 v~d~n~r 110 (830)
T KOG1923|consen 104 VPDENFR 110 (830)
T ss_pred chhhhhH
Confidence 3343333
No 23
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=63.05 E-value=8.1 Score=45.40 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=7.9
Q ss_pred CCCeEEEeeccChHHH
Q 038384 149 EKGTVNISGKVNPNTM 164 (283)
Q Consensus 149 ~~~kVtVtG~Vdp~~v 164 (283)
...|+.|.|++.=.+.
T Consensus 1592 ~TDrLvI~G~asG~T~ 1607 (2039)
T PRK15319 1592 ATDKLVITGDASGTTD 1607 (2039)
T ss_pred cccEEEEeccCCceEE
Confidence 3455666665443333
No 24
>PF02107 FlgH: Flagellar L-ring protein; InterPro: IPR000527 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins [].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009427 bacterial-type flagellum basal body, distal rod, L ring
Probab=61.27 E-value=5.6 Score=35.27 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=27.2
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTML 165 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~vl 165 (283)
.|+|-..+.|+.+.+.++|+|.|.|++|-
T Consensus 110 ~I~G~k~i~vn~e~~~i~lsGiVRp~DI~ 138 (179)
T PF02107_consen 110 VIEGEKQIRVNGEEQYIRLSGIVRPEDID 138 (179)
T ss_pred EEEEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 48999999999999999999999999984
No 25
>PRK09752 adhesin; Provisional
Probab=59.28 E-value=9.8 Score=42.98 Aligned_cols=9 Identities=11% Similarity=0.405 Sum_probs=4.5
Q ss_pred CCeEEEeec
Q 038384 150 KGTVNISGK 158 (283)
Q Consensus 150 ~~kVtVtG~ 158 (283)
..|++|+|+
T Consensus 838 TDrLvI~G~ 846 (1250)
T PRK09752 838 SDQLVLNGN 846 (1250)
T ss_pred CceEEEecC
Confidence 345555554
No 26
>PF03285 Paralemmin: Paralemmin; InterPro: IPR004965 Paralemmin was identified in the chicken lens as a protein with a molecular weight of 65 kDa (isoform 1) and a splice variant of 60 kDa (isoform 2). Isoform 2 is predominant during infancy and levels of isoform 1 increase with age. Paralemmin is localised to the plasma membrane of fibre cells, and was not detected in the annular pad cells. Its localisation to the short side of the fibre cell and the sites of fibre cell interlocking suggests that paralemmin may play a role in the development of such interdigitating processes []. Palmitoylation is important for localising these proteins to the filopodia of dendritic cells where they have been implicated in the regulation of membrane dynamics and process outgrowth. ; GO: 0008360 regulation of cell shape, 0016020 membrane
Probab=59.21 E-value=14 Score=35.50 Aligned_cols=10 Identities=50% Similarity=1.354 Sum_probs=8.3
Q ss_pred cccccccccC
Q 038384 274 SQKSKCCTIM 283 (283)
Q Consensus 274 ~~~~~~~~~~ 283 (283)
-|.-+||+||
T Consensus 269 k~rC~CC~vM 278 (278)
T PF03285_consen 269 KQRCKCCSVM 278 (278)
T ss_pred cccCcccccC
Confidence 4667999999
No 27
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=59.00 E-value=33 Score=34.40 Aligned_cols=9 Identities=22% Similarity=0.707 Sum_probs=3.9
Q ss_pred ccccccccC
Q 038384 132 KYIPSKIQG 140 (283)
Q Consensus 132 ~YLp~KI~G 140 (283)
+|..++-.|
T Consensus 113 KFFENR~NG 121 (498)
T KOG4849|consen 113 KFFENRTNG 121 (498)
T ss_pred hhhhcccCC
Confidence 344444444
No 28
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=58.97 E-value=30 Score=37.65 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=16.2
Q ss_pred EEEec-----CccCChHHHHHHHHHHHhc
Q 038384 23 IVITG-----RGYPDISTRRFLRLLIEKL 46 (283)
Q Consensus 23 ILITG-----KGyPD~aTR~fL~~L~~~~ 46 (283)
|.|++ +|-+-..|..=|+-|-+++
T Consensus 417 isV~SrTLwvG~i~k~v~e~dL~~~feef 445 (894)
T KOG0132|consen 417 ISVCSRTLWVGGIPKNVTEQDLANLFEEF 445 (894)
T ss_pred eeEeeeeeeeccccchhhHHHHHHHHHhc
Confidence 55553 6777777777777776664
No 29
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=55.83 E-value=34 Score=28.84 Aligned_cols=39 Identities=23% Similarity=0.457 Sum_probs=32.5
Q ss_pred CCceEEEecCc--cCChHHHHHHHHHHHhc-CCcEEEEecCC
Q 038384 19 RNRCIVITGRG--YPDISTRRFLRLLIEKL-RLPTFCLVDCD 57 (283)
Q Consensus 19 ~~~cILITGKG--yPD~aTR~fL~~L~~~~-~lpi~~L~D~D 57 (283)
....|+|||-| ||=+-+-.+|+.|+... +.|++.|+=+.
T Consensus 61 ~~~vv~ltGvG~l~P~~R~h~lL~~l~~~~~~~plv~FyPG~ 102 (126)
T PF08747_consen 61 DRDVVFLTGVGSLFPFIRSHELLNNLQPKFGNVPLVVFYPGE 102 (126)
T ss_pred CCcEEEEeCcchhcchhhHHHHHHHHHHHhcCCeEEEECCce
Confidence 35679999876 89999999999999886 88998887543
No 30
>cd01026 TOPRIM_OLD TOPRIM_OLD: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity, consists of an N-terminal ABC-type ATPase domain and a C-terminal Toprim domain; the nuclease activity of OLD is stimulated by ATP, though the ATPase activity is not DNA-dependent. Functional details on OLD are scant and further experimentation is required to define the relationship between the ATPase and Toprim nuclease domains. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general acid in strand cleavage by nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=54.90 E-value=35 Score=26.55 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=26.6
Q ss_pred CceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchh
Q 038384 20 NRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFD 62 (283)
Q Consensus 20 ~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~ 62 (283)
..+-+|-..| . .-..|++.|. .+++|+++|+|.|.-+..
T Consensus 32 ~~i~ii~~gG--~-~~~~~~~ll~-~~~i~~~vi~D~D~~~~~ 70 (97)
T cd01026 32 AGISIIPVGG--K-NFKPFIKLLN-ALGIPVAVLTDLDAKRNE 70 (97)
T ss_pred CCEEEEEeCC--c-chHHHHHHHH-HcCCCEEEEEeCCCCCCc
Confidence 3455555555 2 4455566554 468999999999998765
No 31
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=54.17 E-value=48 Score=30.26 Aligned_cols=72 Identities=18% Similarity=0.216 Sum_probs=41.9
Q ss_pred cCCceEEEecCc--c---CCh-----------HHHHHHHHHHHhcCCcEEEEecCCccchhHH----HHhhhcccccccc
Q 038384 18 TRNRCIVITGRG--Y---PDI-----------STRRFLRLLIEKLRLPTFCLVDCDPYGFDIL----TTYRFGSMQMAYD 77 (283)
Q Consensus 18 ~~~~cILITGKG--y---PD~-----------aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~----~tYk~GS~~~a~e 77 (283)
...++|||||.| | -|+ ..+.|...+...+..|+++.+.+...|.-.. |=|+..+ +
T Consensus 46 ~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~-----~ 120 (254)
T PRK08252 46 PDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALACDLIVAA-----R 120 (254)
T ss_pred CCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEe-----C
Confidence 345789999877 1 121 1222322222346789999999999875433 3344333 3
Q ss_pred ccccCCCCceeeccCccc
Q 038384 78 AKFLRIPEMHWLGAFPSD 95 (283)
Q Consensus 78 s~~l~~P~l~WLGv~~~D 95 (283)
+..+..|.++ +|+.+..
T Consensus 121 ~a~f~~pe~~-~Gl~p~~ 137 (254)
T PRK08252 121 DAKFGLPEVK-RGLVAAG 137 (254)
T ss_pred CCEEeCchhh-cCCCCCc
Confidence 3446667776 5777643
No 32
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=53.90 E-value=30 Score=36.00 Aligned_cols=7 Identities=0% Similarity=0.548 Sum_probs=2.6
Q ss_pred hHHHHhh
Q 038384 62 DILTTYR 68 (283)
Q Consensus 62 ~I~~tYk 68 (283)
++|..+.
T Consensus 94 ELY~nf~ 100 (569)
T KOG3671|consen 94 ELYQNFE 100 (569)
T ss_pred Hhhhhce
Confidence 3333333
No 33
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=52.29 E-value=46 Score=29.87 Aligned_cols=46 Identities=22% Similarity=0.121 Sum_probs=38.3
Q ss_pred ceEEEecCccC-ChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 21 RCIVITGRGYP-DISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 21 ~cILITGKGyP-D~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
.|-+|+..|+. +-.|-..|+.+++. --|++|+|.|--|-.|-...+
T Consensus 22 d~~~I~T~Gs~i~~~~i~~i~~~~~~--rgVIIfTDpD~~GekIRk~i~ 68 (174)
T TIGR00334 22 DVDVIETNGSALKDETINLIKKAQKK--QGVIILTDPDFPGEKIRKKIE 68 (174)
T ss_pred CceEEEECCCccCHHHHHHHHHHhhc--CCEEEEeCCCCchHHHHHHHH
Confidence 47788889988 77888888888764 479999999999999888776
No 34
>PRK10671 copA copper exporting ATPase; Provisional
Probab=52.24 E-value=17 Score=38.99 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=36.1
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFS 178 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w 178 (283)
.+++||.+++||.+ +++|++.++++.+.+.+.+.|-+++.-
T Consensus 26 ~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~ 66 (834)
T PRK10671 26 EQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVS 66 (834)
T ss_pred hcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCccccc
Confidence 55899999999994 677788899999999999999999875
No 35
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=51.83 E-value=23 Score=37.20 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 32 DISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 32 D~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
......|++ +.+..++++++++|+|+.|.....+-+
T Consensus 434 gs~~k~f~k-f~~~~gI~~~vitD~D~~g~~~~~~~~ 469 (581)
T COG3593 434 GSGLKPFIK-FAEAMGIRVHVITDGDEAGKKYEATVR 469 (581)
T ss_pred ccCcHHHHH-HhhccCceEEEEecCCcccchhhhhhh
Confidence 467889999 878788999999999999987766654
No 36
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=48.94 E-value=12 Score=34.84 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=26.9
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTML 165 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~vl 165 (283)
.|+|-.++.||.+.+.+.|+|.|.|++|-
T Consensus 156 ~I~GeK~i~vN~e~e~IrlsGvVRP~DI~ 184 (226)
T PRK12697 156 VVSGEKQMLINQGNEFVRFSGVVNPNTIS 184 (226)
T ss_pred EEEEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 38999999999999999999999999983
No 37
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=48.93 E-value=12 Score=34.68 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=26.5
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTM 164 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~v 164 (283)
.|+|-.++.||.+.+.|.|+|.|.|++|
T Consensus 150 ~I~GeK~i~vN~e~e~i~~sGvVRP~DI 177 (221)
T PRK12407 150 VIRGEKWLTLNQGDEYMRVTGLVRADDI 177 (221)
T ss_pred EEEEEEEEEECCCEEEEEEEEEECHHHC
Confidence 3899999999999999999999999987
No 38
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=48.78 E-value=12 Score=34.59 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=26.6
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTM 164 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~v 164 (283)
.|+|-.++.|+-+.+.++++|.|.|++|
T Consensus 153 ~I~GeK~i~vN~~~e~I~lsGvVRP~DI 180 (224)
T PRK12698 153 VIRGEKWISINNGDEFIRLTGIVRSQDI 180 (224)
T ss_pred EEEEEEEEEECCCEEEEEEEEEECHHHC
Confidence 4899999999999999999999999987
No 39
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=48.54 E-value=23 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=28.4
Q ss_pred CeEEEeeccChHHHHHHHHHcCCceeeeccc
Q 038384 151 GTVNISGKVNPNTMLRILDKNGRHAEFSCLE 181 (283)
Q Consensus 151 ~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~~ 181 (283)
.=|.|||+-|=.-++++|++.||+.+++..+
T Consensus 102 ~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 102 TIVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred EEEEEECCccHHHHHHHHHHcCCEEEEEccC
Confidence 3489999999999999999999999999876
No 40
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=47.71 E-value=29 Score=39.93 Aligned_cols=15 Identities=40% Similarity=0.942 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCCCC
Q 038384 236 PPPPPLPPLPPRPPP 250 (283)
Q Consensus 236 ~~~~~~~~~~~~~~~ 250 (283)
++|+|+-|+||++|.
T Consensus 1899 ~~pqp~gpqPp~~p~ 1913 (1958)
T KOG0391|consen 1899 AQPQPQGPQPPQQPS 1913 (1958)
T ss_pred CCCCCCCCCCCCCCC
Confidence 444444444444444
No 41
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=47.16 E-value=23 Score=24.56 Aligned_cols=12 Identities=50% Similarity=1.107 Sum_probs=6.0
Q ss_pred cCCCCCCCCCCC
Q 038384 227 YERYPPFLPPPP 238 (283)
Q Consensus 227 ~~~~~~~~~~~~ 238 (283)
|+||-|.||=++
T Consensus 16 ~grygpyqp~pe 27 (42)
T PF03875_consen 16 YGRYGPYQPFPE 27 (42)
T ss_pred ccccCCcCCCCC
Confidence 445555555333
No 42
>PRK04946 hypothetical protein; Provisional
Probab=45.68 E-value=27 Score=31.37 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=30.7
Q ss_pred hhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCcc
Q 038384 5 DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPY 59 (283)
Q Consensus 5 dAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~ 59 (283)
+++++-|.+........+.||+|||- .++-+..-++|.+. --|.+|.++.+.
T Consensus 110 ~~L~~fl~~a~~~g~r~v~IIHGkG~-gvLk~~V~~wL~q~--~~V~af~~A~~~ 161 (181)
T PRK04946 110 QELGALIAACRKEHVFCACVMHGHGK-HILKQQTPLWLAQH--PDVMAFHQAPKE 161 (181)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCH-hHHHHHHHHHHcCC--chhheeeccCcc
Confidence 44555554433322223479999997 35555555666543 257788888774
No 43
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=44.82 E-value=39 Score=25.12 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=32.2
Q ss_pred ccccCeeEEEEeCCC-CeEEEeeccChHHHHHHHHHcCC
Q 038384 136 SKIQGVYSVVIDAEK-GTVNISGKVNPNTMLRILDKNGR 173 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~-~kVtVtG~Vdp~~vlkkl~k~GK 173 (283)
..+.||.++..+... =++.|....+...||+.|...|-
T Consensus 27 ~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~ 65 (84)
T PF13732_consen 27 EELPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGI 65 (84)
T ss_pred hhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCC
Confidence 457899999876555 57899999999999999999997
No 44
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=44.69 E-value=15 Score=34.32 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=26.2
Q ss_pred ccCeeEEEEeCCCCeEEEeeccChHHH
Q 038384 138 IQGVYSVVIDAEKGTVNISGKVNPNTM 164 (283)
Q Consensus 138 I~GV~sv~ID~~~~kVtVtG~Vdp~~v 164 (283)
|+|-..|.||.+.+.++|+|.|.|++|
T Consensus 165 I~G~kev~vN~e~~~i~vsGvVRP~DI 191 (234)
T PRK12788 165 ISGSQEVRVNYEMRVLNVGGIVRPLDI 191 (234)
T ss_pred EEEEEEEEECCCEEEEEEEEEECHHHC
Confidence 899999999999999999999999998
No 45
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=44.42 E-value=15 Score=34.11 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=26.5
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTM 164 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~v 164 (283)
.|+|-.++.||.+.+.++++|.|.|++|
T Consensus 159 ~I~GeK~v~vN~e~e~i~lsGvVRP~DI 186 (230)
T PRK12701 159 VVQGEKWVRINQGNEFVRLSGIVRPQDI 186 (230)
T ss_pred EEEEEEEEEECCCeEEEEEEEEECHHHC
Confidence 3899999999999999999999999987
No 46
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=43.86 E-value=16 Score=33.98 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=26.8
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTML 165 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~vl 165 (283)
.|+|-.++.||.+.+.+.|+|.|.|++|-
T Consensus 160 vI~GeK~i~vN~~~e~irlsGiVRP~DI~ 188 (230)
T PRK12700 160 QIAGEKQIAINRGSEYVRFSGVVDPRSIT 188 (230)
T ss_pred EEEEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 38999999999999999999999999983
No 47
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=43.58 E-value=21 Score=34.94 Aligned_cols=28 Identities=21% Similarity=0.314 Sum_probs=18.8
Q ss_pred CCcEEEEecCCccchhHHHHhhhcccccc
Q 038384 47 RLPTFCLVDCDPYGFDILTTYRFGSMQMA 75 (283)
Q Consensus 47 ~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a 75 (283)
.+|++||+++ ||-|.-|.+=--||+.++
T Consensus 144 ~vpl~GF~Ga-PwTlm~YmiEGGgSkt~~ 171 (359)
T KOG2872|consen 144 RVPLIGFVGA-PWTLMTYMIEGGGSKTFT 171 (359)
T ss_pred ccceeeecCC-chhhheeeecCCCchhHH
Confidence 4899999987 776654444445666554
No 48
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=43.35 E-value=17 Score=33.60 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=26.9
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTML 165 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~vl 165 (283)
.|+|-..+.||.+.+.+.|+|.|.|++|-
T Consensus 152 vI~G~K~i~vN~e~~~i~lsGiVRP~DI~ 180 (222)
T PRK00249 152 VIRGEKEVRVNQGTEFLRVSGVVRPRDIS 180 (222)
T ss_pred EEEEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 48999999999999999999999999983
No 49
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=43.00 E-value=29 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=23.6
Q ss_pred ccCeeEEEEeCCCCeEEEeeccChHHHHHHHH
Q 038384 138 IQGVYSVVIDAEKGTVNISGKVNPNTMLRILD 169 (283)
Q Consensus 138 I~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~ 169 (283)
+++- .+.|...++.|+++|.|+-+.-.+++.
T Consensus 14 ~~~~-~i~v~v~~g~v~L~G~v~s~~~~~~a~ 44 (64)
T PF04972_consen 14 LPDS-NISVSVENGVVTLSGEVPSQEQRDAAE 44 (64)
T ss_dssp TT-T-TEEEEEECTEEEEEEEESSCHHHHHHH
T ss_pred cCCC-eEEEEEECCEEEEEeeCcHHHHHHhHH
Confidence 4444 588888999999999997766666654
No 50
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=42.94 E-value=17 Score=34.27 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=27.2
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTML 165 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~vl 165 (283)
.|+|-.++.||.+.+.+.|+|.|.|++|-
T Consensus 177 vI~GeK~i~vN~~~e~IrlsGvVRP~DI~ 205 (246)
T PRK12699 177 LVSGEKQIGINQGHEFIRLSGVINPINVI 205 (246)
T ss_pred EEEEEEEEEECCCeEEEEEEEEEChhhcc
Confidence 48999999999999999999999999993
No 51
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=42.02 E-value=17 Score=33.90 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=26.5
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTM 164 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~v 164 (283)
.|+|-.++.||-+.+.+.|+|.|.|++|
T Consensus 166 vI~G~k~v~vN~e~~~i~lsGvVRP~DI 193 (236)
T PRK12696 166 QVEGARETRVNDETQYIVVSGLVRPRDI 193 (236)
T ss_pred EEEEEEEEEECCCEEEEEEEEEECHHHC
Confidence 3899999999999999999999999987
No 52
>PRK04017 hypothetical protein; Provisional
Probab=41.08 E-value=73 Score=27.37 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.6
Q ss_pred CCcEEEEecCCccchhHHHHhh
Q 038384 47 RLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 47 ~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
.--|++|+|+|-.|-.|....+
T Consensus 65 ~r~VIILTD~D~~GekIr~~l~ 86 (132)
T PRK04017 65 GKEVIILTDFDRKGEELAKKLS 86 (132)
T ss_pred CCeEEEEECCCcchHHHHHHHH
Confidence 3479999999999999977664
No 53
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=40.13 E-value=41 Score=27.92 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=6.3
Q ss_pred CcEEEEecCCccch
Q 038384 48 LPTFCLVDCDPYGF 61 (283)
Q Consensus 48 lpi~~L~D~DP~Gi 61 (283)
+-++++.+.|=.|=
T Consensus 69 vd~vvv~~ldRl~R 82 (140)
T cd03770 69 IDIVIVKDMSRLGR 82 (140)
T ss_pred CCEEEEeccchhcc
Confidence 34444444444443
No 54
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=40.12 E-value=28 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=21.6
Q ss_pred eEEEeeccChHHHHHHHHHcCCceeeecc
Q 038384 152 TVNISGKVNPNTMLRILDKNGRHAEFSCL 180 (283)
Q Consensus 152 kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~ 180 (283)
=|.|||+-|=..++++|+..|++..++..
T Consensus 99 ivLvSgD~Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 99 IVLVSGDSDFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp EEEE---GGGHHHHHHHHHH--EEEEEE-
T ss_pred EEEEECcHHHHHHHHHHHHcCCEEEEEEe
Confidence 48999999999999999999999999983
No 55
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=39.87 E-value=47 Score=34.01 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=19.4
Q ss_pred CccccccccccccccCeeEEEEeCCCCe
Q 038384 125 SFSFLSEKYIPSKIQGVYSVVIDAEKGT 152 (283)
Q Consensus 125 ~~~fl~~~YLp~KI~GV~sv~ID~~~~k 152 (283)
..+|+.+-|=.+.|+.+..+.-+...+|
T Consensus 153 dPsyFFDLWKekmLqdted~~kekrk~k 180 (518)
T KOG1830|consen 153 DPSYFFDLWKEKMLQDTEDKMKEKRKQK 180 (518)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4677777777777777776665655555
No 56
>PF13289 SIR2_2: SIR2-like domain
Probab=38.20 E-value=1e+02 Score=24.57 Aligned_cols=49 Identities=14% Similarity=0.296 Sum_probs=32.5
Q ss_pred HHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcC---CcEEEEecCCc
Q 038384 8 FHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLR---LPTFCLVDCDP 58 (283)
Q Consensus 8 F~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~---lpi~~L~D~DP 58 (283)
|.++++..+ . ...+|+-|.|+-|-.-|.+|+.+.+..+ ..+|+++..+.
T Consensus 76 ~~~~l~~~l-~-~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 76 FPNFLRSLL-R-SKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD 127 (143)
T ss_pred HHHHHHHHH-c-CCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc
Confidence 444444333 2 2345555999999999999998887753 36777766555
No 57
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=67 Score=31.89 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCCCCC
Q 038384 205 YIPPRVPVPYSSYPMLG 221 (283)
Q Consensus 205 ~~~~~~~~p~~~y~~~~ 221 (283)
|+.+..+.|..=|.+.+
T Consensus 9 ~~~p~~~pp~ar~q~~~ 25 (362)
T KOG1546|consen 9 CQRPMAPPPGARYQCAG 25 (362)
T ss_pred CCCCCCCCCCCcccccc
Confidence 66565555555555555
No 58
>PRK11023 outer membrane lipoprotein; Provisional
Probab=37.19 E-value=55 Score=29.07 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=28.8
Q ss_pred ccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCc
Q 038384 138 IQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRH 174 (283)
Q Consensus 138 I~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~ 174 (283)
++.-..++|+...|+||.+|.|+-+....++.+.-|+
T Consensus 64 l~~~~~I~V~v~~G~V~L~G~V~~~~~k~~A~~ia~~ 100 (191)
T PRK11023 64 IKKEARINVTAYQGKVLLTGQSPNAELSERAKQIAMG 100 (191)
T ss_pred cCcCceEEEEEECCEEEEEEEeCCHHHHHHHHHHHhc
Confidence 3334578999999999999999999887777665443
No 59
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=36.68 E-value=71 Score=25.73 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=34.4
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeecc
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCL 180 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~ 180 (283)
+|.+ -++||.+.+.|+|.+-|.=.+|.+.|.+.|....+.+.
T Consensus 52 ~l~~--i~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~ 93 (139)
T PF01565_consen 52 RLNK--IIEIDPENGTVTVGAGVTWGDLYEALAPRGLMLPVEPG 93 (139)
T ss_dssp TCGC--EEEEETTTTEEEEETTSBHHHHHHHHHHHTEEESSGGG
T ss_pred cccc--cccccccceeEEEeccccchhccccccccccccccccc
Confidence 3444 37899999999999999999999999988876665443
No 60
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=36.51 E-value=57 Score=25.43 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=26.1
Q ss_pred ccccccCeeEEEEeC-CCCeEEEeeccChHHHHHHHH---H-cCCceeeecc
Q 038384 134 IPSKIQGVYSVVIDA-EKGTVNISGKVNPNTMLRILD---K-NGRHAEFSCL 180 (283)
Q Consensus 134 Lp~KI~GV~sv~ID~-~~~kVtVtG~Vdp~~vlkkl~---k-~GK~Ae~w~~ 180 (283)
+.....|.+.++|.. +.+||+|+|+ ++..+..-|. | .. ++.+||.
T Consensus 24 ~~~~~~~~d~F~l~~~~~gki~I~G~-s~vala~Gl~~YLk~~c-~~~isW~ 73 (86)
T PF12971_consen 24 LIPSSNGKDVFELSSADNGKIVIRGN-SGVALASGLNWYLKYYC-HVHISWN 73 (86)
T ss_dssp E---BTTBEEEEEEE-SSS-EEEEES-SHHHHHHHHHHHHHHHS---B--TT
T ss_pred EecCCCCCCEEEEEeCCCCeEEEEeC-CHHHHHHHHHHHHHHHh-CceEeec
Confidence 334444999999998 9999999999 4445544442 3 33 4666664
No 61
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=36.31 E-value=37 Score=27.55 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=28.9
Q ss_pred ceEEEecCccCChHHHHHHHHHHHh-cCCcEEEEecCCccchhH
Q 038384 21 RCIVITGRGYPDISTRRFLRLLIEK-LRLPTFCLVDCDPYGFDI 63 (283)
Q Consensus 21 ~cILITGKGyPD~aTR~fL~~L~~~-~~lpi~~L~D~DP~Gi~I 63 (283)
.||+|+-=+--.-..+.||..+... ++||||.++|.+ .+-+|
T Consensus 40 ~avvi~~d~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~-~~~~l 82 (115)
T PF03709_consen 40 AAVVISWDGEEEDEAQELLDKIRERNFGIPVFLLAERD-TTEDL 82 (115)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSTT-EEEEEESCC-HHHCC
T ss_pred eEEEEEcccccchhHHHHHHHHHHhCCCCCEEEEecCC-CcccC
Confidence 4788875311125678899999876 899999999987 44333
No 62
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=36.24 E-value=64 Score=24.89 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 35 TRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 35 TR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
|..++..|.+. .--|+.|+|+|--|-.|.....
T Consensus 34 ~~~~~~~l~~~-~~~VIiltD~D~aG~~i~~~~~ 66 (81)
T cd01027 34 NKETIELIKKA-YRGVIILTDPDRKGEKIRKKLS 66 (81)
T ss_pred CHHHHHHHHHh-CCEEEEEECCCHHHHHHHHHHH
Confidence 44555556543 3479999999999999976654
No 63
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=34.72 E-value=1.9e+02 Score=26.36 Aligned_cols=47 Identities=13% Similarity=0.139 Sum_probs=27.7
Q ss_pred cCCcEEEEecCCccchhHHHHhhhccccccccccccCCCCceeeccCcc
Q 038384 46 LRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPS 94 (283)
Q Consensus 46 ~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~~P~l~WLGv~~~ 94 (283)
+..|+++.++++..|.-.....-.-- ..+-++..+..|.++ +|+.+.
T Consensus 97 ~~kpvIAav~G~a~GgG~~lala~D~-~ia~~~a~f~~pe~~-~Gl~p~ 143 (260)
T PRK07511 97 FPKPVIAAVEGAAAGAGFSLALACDL-LVAARDAKFVMAYVK-VGLTPD 143 (260)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE-EEeeCCCEEeccccc-cCcCCC
Confidence 57899999999998874443332111 122223345666666 577654
No 64
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=34.37 E-value=2.8e+02 Score=28.50 Aligned_cols=16 Identities=6% Similarity=-0.182 Sum_probs=11.1
Q ss_pred HHHHcCCceeeecccc
Q 038384 167 ILDKNGRHAEFSCLEF 182 (283)
Q Consensus 167 kl~k~GK~Ae~w~~~~ 182 (283)
++...+..+++.+...
T Consensus 262 ~i~e~~~~v~~~~~~~ 277 (487)
T KOG4672|consen 262 RINENITSVPLLPPPG 277 (487)
T ss_pred ccccccccccccCCCC
Confidence 6667777777777653
No 65
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=33.98 E-value=27 Score=33.15 Aligned_cols=18 Identities=61% Similarity=1.141 Sum_probs=15.0
Q ss_pred hcCCcEEEEec--CCccchh
Q 038384 45 KLRLPTFCLVD--CDPYGFD 62 (283)
Q Consensus 45 ~~~lpi~~L~D--~DP~Gi~ 62 (283)
.++|||++|+| +||.+++
T Consensus 177 klgIPVvAlvDTn~dpd~VD 196 (252)
T COG0052 177 KLGIPVVALVDTNCDPDGVD 196 (252)
T ss_pred HcCCCEEEEecCCCCCccCc
Confidence 47999999998 6787775
No 66
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=32.80 E-value=1.7e+02 Score=26.47 Aligned_cols=47 Identities=19% Similarity=0.385 Sum_probs=28.0
Q ss_pred cCCcEEEEecCCccchhHHHHhhhccccccccccccCCCCceeeccCcc
Q 038384 46 LRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPS 94 (283)
Q Consensus 46 ~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~~P~l~WLGv~~~ 94 (283)
+..|+++.+++...|.-....... -...+.++..+..|.++ +|+.+.
T Consensus 93 ~~kpvIAav~G~a~GgG~~lalac-D~ria~~~a~f~~pe~~-~Gl~p~ 139 (257)
T PRK07658 93 FSKPVIAAIHGAALGGGLELAMSC-HIRFATESAKLGLPELN-LGLIPG 139 (257)
T ss_pred CCCCEEEEEcCeeeeHHHHHHHhC-CEEEecCCCcccCcccc-cCCCCC
Confidence 578999999999987654433322 11222334445666666 566543
No 67
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=32.54 E-value=1.1e+02 Score=28.21 Aligned_cols=7 Identities=29% Similarity=0.444 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 038384 115 KFEIEAF 121 (283)
Q Consensus 115 KaEIEAL 121 (283)
|.-|+++
T Consensus 61 ~~~i~~~ 67 (205)
T PF12238_consen 61 KHKISHM 67 (205)
T ss_pred HHHHHHH
Confidence 3333333
No 68
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=32.40 E-value=35 Score=31.31 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=28.7
Q ss_pred eEEEecCccCChHHHHHHHHHHHhcCCcEEEEe
Q 038384 22 CIVITGRGYPDISTRRFLRLLIEKLRLPTFCLV 54 (283)
Q Consensus 22 cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~ 54 (283)
-|+|+|.|=-.+.-|.|..+|.. ++.|.|.+.
T Consensus 41 kv~V~G~GkSG~Igkk~Aa~L~s-~G~~a~fv~ 72 (202)
T COG0794 41 KVFVTGVGKSGLIGKKFAARLAS-TGTPAFFVG 72 (202)
T ss_pred cEEEEcCChhHHHHHHHHHHHHc-cCCceEEec
Confidence 49999999999999999999964 488999888
No 69
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=32.22 E-value=32 Score=27.69 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=26.8
Q ss_pred cCccCChHHHHHHHHHHHhcCCcEEEEecCCc
Q 038384 27 GRGYPDISTRRFLRLLIEKLRLPTFCLVDCDP 58 (283)
Q Consensus 27 GKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP 58 (283)
|||+-......+++.|... ++|+|+-||-|=
T Consensus 33 ~~G~~~~v~~~~~~~L~~~-g~P~Y~hv~~~N 63 (89)
T PF08444_consen 33 GQGLMSQVMYHLAQYLHKL-GFPFYGHVDEDN 63 (89)
T ss_pred cCCHHHHHHHHHHHHHHHC-CCCeEeehHhcc
Confidence 7899999999999999765 899999999653
No 70
>PRK00933 ribosomal biogenesis protein; Validated
Probab=31.96 E-value=51 Score=29.15 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.6
Q ss_pred EEEecCccCChHHHHHHHHHHHhcCCc
Q 038384 23 IVITGRGYPDISTRRFLRLLIEKLRLP 49 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~~~lp 49 (283)
+|||..--|+-.||+|.+.|+..++++
T Consensus 1 mIITTSrkPs~~t~~fAkeLa~~ln~~ 27 (165)
T PRK00933 1 MIITTSRKPSQRTRSLVKDLARFLNCK 27 (165)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHhCCE
Confidence 489999999999999999999877653
No 71
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=31.58 E-value=54 Score=30.92 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=15.9
Q ss_pred cCccCChHHHHHHHHHHHhcC
Q 038384 27 GRGYPDISTRRFLRLLIEKLR 47 (283)
Q Consensus 27 GKGyPD~aTR~fL~~L~~~~~ 47 (283)
-.+-+.-.+|.+||++...+.
T Consensus 6 w~~K~yGs~RSIVR~IGt~LP 26 (253)
T PF05308_consen 6 WSNKPYGSSRSIVRRIGTNLP 26 (253)
T ss_pred ccCCCCcchHHHHHHHhccCC
Confidence 445556788999999998753
No 72
>PRK06849 hypothetical protein; Provisional
Probab=30.35 E-value=1e+02 Score=29.57 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=32.9
Q ss_pred ceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 21 RCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 21 ~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
.-|||||-+.+ .+..+++.|.+. +..|+ ++|.+++.+...+.|-
T Consensus 5 ~~VLI~G~~~~--~~l~iar~l~~~-G~~Vi-~~d~~~~~~~~~s~~~ 48 (389)
T PRK06849 5 KTVLITGARAP--AALELARLFHNA-GHTVI-LADSLKYPLSRFSRAV 48 (389)
T ss_pred CEEEEeCCCcH--HHHHHHHHHHHC-CCEEE-EEeCCchHHHHHHHhh
Confidence 46999998876 678888888876 77776 5588888766555443
No 73
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.27 E-value=37 Score=33.32 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=22.0
Q ss_pred HHHHhcCCcEEEEecCCccchhHHHHhhhccc
Q 038384 41 LLIEKLRLPTFCLVDCDPYGFDILTTYRFGSM 72 (283)
Q Consensus 41 ~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~ 72 (283)
-+-..+++||+|++|+|++-+.=...|.-||.
T Consensus 283 dIl~RfgipiiGItDgD~D~~~~~~~~~~gsv 314 (367)
T COG4069 283 DILYRFGIPIIGITDGDCDEVTREVNIAPGSV 314 (367)
T ss_pred HHHHhcCCcEEecccCChHHhhhhcccCCCcE
Confidence 33345699999999999995444444555554
No 74
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=30.04 E-value=75 Score=24.92 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=20.7
Q ss_pred CceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCcc
Q 038384 20 NRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPY 59 (283)
Q Consensus 20 ~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~ 59 (283)
..|||+||...|+-.+..+++.. ++||+ .++.|-|
T Consensus 62 i~~iIltg~~~~~~~v~~la~~~----~i~vi-~t~~dtf 96 (105)
T PF07085_consen 62 IACIILTGGLEPSEEVLELAKEL----GIPVI-STPYDTF 96 (105)
T ss_dssp ECEEEEETT----HHHHHHHHHH----T-EEE-E-SS-HH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHC----CCEEE-EECCCHH
Confidence 47999999999998888887776 46655 4555554
No 75
>PLN02591 tryptophan synthase
Probab=29.99 E-value=1.2e+02 Score=28.26 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCc
Q 038384 36 RRFLRLLIEKLRLPTFCLVDCDP 58 (283)
Q Consensus 36 R~fL~~L~~~~~lpi~~L~D~DP 58 (283)
-.+++.+.++.++|++.++=+++
T Consensus 67 ~~~~~~~r~~~~~p~ilm~Y~N~ 89 (250)
T PLN02591 67 ISMLKEVAPQLSCPIVLFTYYNP 89 (250)
T ss_pred HHHHHHHhcCCCCCEEEEecccH
Confidence 34455555456789888888876
No 76
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=29.89 E-value=17 Score=35.16 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=6.5
Q ss_pred ccccccCeeEEEEe
Q 038384 134 IPSKIQGVYSVVID 147 (283)
Q Consensus 134 Lp~KI~GV~sv~ID 147 (283)
|.+-|..+.||.|+
T Consensus 136 vsEgi~aLgWV~v~ 149 (312)
T PF01213_consen 136 VSEGIPALGWVAVE 149 (312)
T ss_dssp HHCGGGGGGGGG--
T ss_pred HHHhhheeeeeeeC
Confidence 34555555555555
No 77
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=29.49 E-value=1.2e+02 Score=25.84 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=28.7
Q ss_pred eEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 22 CIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 22 cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
.|++.|.|-=...|-..|+.... .-.|+.|+|+|-.|-.|....+
T Consensus 32 ~i~~~g~~i~~~~~ie~i~~~~~--~k~VIILTD~D~~Ge~Irk~l~ 76 (127)
T COG1658 32 VIITNGSAINSLETIELIKKAQK--YKGVIILTDPDRKGERIRKKLK 76 (127)
T ss_pred eEEEcCCccchHHHHHHHHHhhc--cCCEEEEeCCCcchHHHHHHHH
Confidence 45555655322444444444333 3479999999999998877664
No 78
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=28.26 E-value=19 Score=34.85 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=15.9
Q ss_pred CccccccccccccccCeeEEEEeCCCCeEEEeeccChHHHHHHHH
Q 038384 125 SFSFLSEKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILD 169 (283)
Q Consensus 125 ~~~fl~~~YLp~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~ 169 (283)
+..|+ ++|..=-+|+- --+=|+|.+ .|...|+-..
T Consensus 126 ~s~~f--NHLsavsEgi~------aLgWV~v~p--~P~~~V~e~~ 160 (312)
T PF01213_consen 126 GSKFF--NHLSAVSEGIP------ALGWVAVEP--KPAPYVKEMK 160 (312)
T ss_dssp TSTTH--HHHHHHHCGGG------GGGGGG--S---HHHHHHHHH
T ss_pred CCchH--HHHHHHHHhhh------eeeeeeeCC--chHhHHHHHH
Confidence 44454 46666666663 234455543 2555444443
No 79
>PF13707 RloB: RloB-like protein
Probab=28.23 E-value=1.2e+02 Score=25.89 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=34.0
Q ss_pred hHHHHHHhcccccCCceEEEecC--ccCChHHHHHHHHHH----HhcCCcEEEEecCC
Q 038384 6 AVFHRLANDQYCTRNRCIVITGR--GYPDISTRRFLRLLI----EKLRLPTFCLVDCD 57 (283)
Q Consensus 6 AVF~~L~~~~f~~~~~cILITGK--GyPD~aTR~fL~~L~----~~~~lpi~~L~D~D 57 (283)
.-|+.|++..........++-.+ |-|.-..+...+.+. ....--|++++|.|
T Consensus 13 ~YF~~l~~~~~~~~~~i~~~~~~~~~~p~~lv~~a~~~~~~~~~~~~~d~v~~V~D~D 70 (183)
T PF13707_consen 13 NYFKSLRKKRRRSNLDIKVIPSKGGSDPSSLVEKAKKKRKKKKNDNEYDEVWCVFDRD 70 (183)
T ss_pred HHHHHHHHhcCCCceEEEEeecCCCCCHHHHHHHHHHHHhhhccccCCCEEEEEEeCC
Confidence 45777756665555566666666 566666666666665 12235899999999
No 80
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=27.84 E-value=53 Score=26.89 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=26.5
Q ss_pred ccccCeeEEEE-------eCCCCeEEEeec-cChHHHHHHHHHcCC
Q 038384 136 SKIQGVYSVVI-------DAEKGTVNISGK-VNPNTMLRILDKNGR 173 (283)
Q Consensus 136 ~KI~GV~sv~I-------D~~~~kVtVtG~-Vdp~~vlkkl~k~GK 173 (283)
++++||+.++| +.+.=||||-|. +|-+.|.+.+.+.|-
T Consensus 27 ~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg 72 (95)
T PF02680_consen 27 SELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGG 72 (95)
T ss_dssp HTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-
T ss_pred HhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCC
Confidence 34666655433 344456999998 999999999999884
No 81
>cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofact
Probab=26.99 E-value=41 Score=28.49 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=15.4
Q ss_pred cEEEEecCCccchhHHH
Q 038384 49 PTFCLVDCDPYGFDILT 65 (283)
Q Consensus 49 pi~~L~D~DP~Gi~I~~ 65 (283)
.|.+++|+|.+|..|..
T Consensus 79 kiiimtDaD~DG~hI~~ 95 (120)
T cd03365 79 RLMIMTDQDHDGSHIKG 95 (120)
T ss_pred eEEEEeCCCCCccHHHH
Confidence 79999999999999865
No 82
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=26.50 E-value=52 Score=33.70 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=7.1
Q ss_pred cccccCeeEEEEe
Q 038384 135 PSKIQGVYSVVID 147 (283)
Q Consensus 135 p~KI~GV~sv~ID 147 (283)
.+-|.+.-+|.++
T Consensus 141 ~e~i~algWVav~ 153 (480)
T KOG2675|consen 141 SESIPALGWVAVK 153 (480)
T ss_pred HhhcccceeEecC
Confidence 3445555566555
No 83
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=26.36 E-value=43 Score=33.42 Aligned_cols=15 Identities=67% Similarity=1.570 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCC
Q 038384 240 PLPPLPPRPPPPRPP 254 (283)
Q Consensus 240 ~~~~~~~~~~~~~~~ 254 (283)
|||++||.+|.+-|+
T Consensus 44 ppp~~p~~~~~~~~~ 58 (377)
T KOG1945|consen 44 PPPPLPPKPPSQCPP 58 (377)
T ss_pred CCCCCCCCccccCCC
Confidence 344455555555555
No 84
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=26.01 E-value=42 Score=31.40 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=26.3
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTM 164 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~v 164 (283)
.|+|-.+|.||.+.+-++|+|.|-|++|
T Consensus 163 ~I~G~Kev~vN~~~e~i~vsGvVRP~DI 190 (230)
T COG2063 163 VIEGEKEVRVNGEKEIIRVSGVVRPDDI 190 (230)
T ss_pred EEEEEEEEEECCceEEEEEeeeEccccc
Confidence 3889999999999999999999999987
No 85
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=26.00 E-value=1.4e+02 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=24.1
Q ss_pred HHHHHHhcccccCCceEEEecCccCCh-HHHHHHHHHHH
Q 038384 7 VFHRLANDQYCTRNRCIVITGRGYPDI-STRRFLRLLIE 44 (283)
Q Consensus 7 VF~~L~~~~f~~~~~cILITGKGyPD~-aTR~fL~~L~~ 44 (283)
.+++|.+.+ ..++++||+.+--. .||.||..+.+
T Consensus 35 a~~~l~~~G----~~ivy~TGRp~~~~~~t~~~l~~~~~ 69 (157)
T smart00775 35 LYRDIQNNG----YKILYLTARPIGQADRTRSYLSQIKQ 69 (157)
T ss_pred HHHHHHHcC----CeEEEEcCCcHHHHHHHHHHHHHhhh
Confidence 445555544 45789999988876 58888888743
No 86
>cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleavage by topisomerases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=25.98 E-value=44 Score=28.09 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.3
Q ss_pred cEEEEecCCccchhHHH
Q 038384 49 PTFCLVDCDPYGFDILT 65 (283)
Q Consensus 49 pi~~L~D~DP~Gi~I~~ 65 (283)
.|.+++|+|.+|..|..
T Consensus 75 kiiimtDaD~DG~hI~~ 91 (115)
T cd01030 75 KIIIMTDADVDGSHIRT 91 (115)
T ss_pred eEEEEeCCCCCccHhHH
Confidence 78999999999999865
No 87
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=25.43 E-value=77 Score=26.05 Aligned_cols=10 Identities=30% Similarity=0.291 Sum_probs=4.2
Q ss_pred CCccccCCCC
Q 038384 222 PEFSYYERYP 231 (283)
Q Consensus 222 p~~~~~~~~~ 231 (283)
+..+.|-++|
T Consensus 54 ~~~~d~P~~P 63 (97)
T PF04834_consen 54 PFAFDLPVYP 63 (97)
T ss_pred cccccCCCCC
Confidence 4444344444
No 88
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.87 E-value=1.2e+02 Score=24.94 Aligned_cols=33 Identities=12% Similarity=0.358 Sum_probs=26.5
Q ss_pred EEEEeCCCCeEEEeec-cChHHHHHHHHHcCCce
Q 038384 143 SVVIDAEKGTVNISGK-VNPNTMLRILDKNGRHA 175 (283)
Q Consensus 143 sv~ID~~~~kVtVtG~-Vdp~~vlkkl~k~GK~A 175 (283)
.++++...=||||.|+ +|=+.+.+.+.+.|--.
T Consensus 43 eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~I 76 (97)
T COG1888 43 EIDVETENLKITIEGTNLDYDEIEEVIEELGGAI 76 (97)
T ss_pred EeeehhcceEEEEEcCCCCHHHHHHHHHHcCCee
Confidence 4455667778999997 99999999999988643
No 89
>PRK15313 autotransport protein MisL; Provisional
Probab=24.78 E-value=90 Score=34.83 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=8.3
Q ss_pred CCCeEEEeeccChH
Q 038384 149 EKGTVNISGKVNPN 162 (283)
Q Consensus 149 ~~~kVtVtG~Vdp~ 162 (283)
...|+.|+|+..=.
T Consensus 485 ~tDkLvI~G~tsG~ 498 (955)
T PRK15313 485 ETDRLQVLGNTSGN 498 (955)
T ss_pred ccceEEEeccCCce
Confidence 45577777765433
No 90
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=24.76 E-value=2.9e+02 Score=26.51 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=59.3
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEec-CCcc-chhHHHHhhhccccccccccccCCCCceeeccCcccccccCCCCccccc
Q 038384 31 PDISTRRFLRLLIEKLRLPTFCLVD-CDPY-GFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLK 108 (283)
Q Consensus 31 PD~aTR~fL~~L~~~~~lpi~~L~D-~DP~-Gi~I~~tYk~GS~~~a~es~~l~~P~l~WLGv~~~Di~~~~l~~~~llp 108 (283)
-+-+-+.|-+++.+.-+-+..+|+| +|-+ |+......+..-. + +-.+.|||+.- -....
T Consensus 216 ~~~~~~Af~~~~~~~~~~~~i~L~DTyd~~~~~~~~~~~~~~~~---------~--~~~~~gvR~DS--------Gd~~~ 276 (343)
T cd01567 216 EEAAFEAFARWLPQFGGGLGIALIDTYDTDNGFLNALKLAKALG---------A--GGGLLGVRLDS--------GDPVE 276 (343)
T ss_pred HHHHHHHHHHHhhhcCCCceEEEEecCChHHHHHHHHHHHHhhc---------c--cCCCcEEECCC--------CCHHH
Confidence 3567778888887655568899999 5555 4544433332100 0 23567777642 11111
Q ss_pred CChhhhHHHHHHHhhcCccccccccccccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCC
Q 038384 109 LTVEGVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGR 173 (283)
Q Consensus 109 Lt~r~~KaEIEAL~~~~~~fl~~~YLp~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK 173 (283)
+..+ -++.|...|.+ ....+++++|..|-++.++.+...++
T Consensus 277 ~~~~----~~~~l~~~g~~--------------------~~~~~ii~sg~l~~~~~i~~~~~~~~ 317 (343)
T cd01567 277 LIKK----VRKHLDELGID--------------------LNKKKIIISGDLDTEEAIELLLEQGA 317 (343)
T ss_pred HHHH----HHHHHHHcCCC--------------------CCCeEEEEECCCCHHHHHHHHHHcCC
Confidence 1111 23344433332 67888999999998888999988776
No 91
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=24.42 E-value=2.9e+02 Score=25.50 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=25.9
Q ss_pred cCCcEEEEecCCccchhHH----HHhhhccccccccccccCCCCceeeccCcc
Q 038384 46 LRLPTFCLVDCDPYGFDIL----TTYRFGSMQMAYDAKFLRIPEMHWLGAFPS 94 (283)
Q Consensus 46 ~~lpi~~L~D~DP~Gi~I~----~tYk~GS~~~a~es~~l~~P~l~WLGv~~~ 94 (283)
+..|+++.+++...|.-.. |-|...+ ++..+..|.++ +|+.+.
T Consensus 106 ~~kPvIAav~G~a~GgG~~lalacD~ria~-----~~a~f~~pe~~-~Gl~p~ 152 (273)
T PRK07396 106 CPKPVIAMVAGYAIGGGHVLHLVCDLTIAA-----DNAIFGQTGPK-VGSFDG 152 (273)
T ss_pred CCCCEEEEECCEEehHHHHHHHhCCEEEee-----CCcEEeccccc-ccccCC
Confidence 5789999999999985332 2343333 33345555554 365543
No 92
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=24.17 E-value=83 Score=32.32 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=11.4
Q ss_pred ccccccccccccccCeeEEEEeCCCCeEEEe
Q 038384 126 FSFLSEKYIPSKIQGVYSVVIDAEKGTVNIS 156 (283)
Q Consensus 126 ~~fl~~~YLp~KI~GV~sv~ID~~~~kVtVt 156 (283)
..|+ ++|..=.+|+- .-+=|+|.
T Consensus 131 S~~F--NhLsav~e~i~------algWVav~ 153 (480)
T KOG2675|consen 131 SPFF--NHLSAVSESIP------ALGWVAVK 153 (480)
T ss_pred chHH--HHHHHHHhhcc------cceeEecC
Confidence 4444 45555555553 33445555
No 93
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=24.04 E-value=77 Score=25.28 Aligned_cols=19 Identities=26% Similarity=0.726 Sum_probs=16.6
Q ss_pred eEEEeeccChHHHHHHHHH
Q 038384 152 TVNISGKVNPNTMLRILDK 170 (283)
Q Consensus 152 kVtVtG~Vdp~~vlkkl~k 170 (283)
.|.|+|++|++.+++.+.+
T Consensus 21 ~l~i~Gd~~~~~~~~~i~~ 39 (184)
T PF05193_consen 21 TLVIVGDIDPDELEKLIEK 39 (184)
T ss_dssp EEEEEESSGHHHHHHHHHH
T ss_pred EEEEEcCccHHHHHHHHHh
Confidence 5789999999999988875
No 94
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=23.94 E-value=4.7e+02 Score=25.51 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=39.2
Q ss_pred ceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCcc----chhHHHHhhhcccccccccc
Q 038384 21 RCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPY----GFDILTTYRFGSMQMAYDAK 79 (283)
Q Consensus 21 ~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~----Gi~I~~tYk~GS~~~a~es~ 79 (283)
+-||||++-.|-..|..|++.|.+. +|=.-+.+.|-+ +++|+-.--++..-..++..
T Consensus 97 pKvlITt~~~~~~~t~~~~~eL~~i--iPNs~~~~R~~~~vk~i~~~a~~~eftdlvvV~edR 157 (302)
T KOG2780|consen 97 PKVLITTSKNPKRTTYKFASELLDI--IPNSTVKKRDNYTVKSIVEIAIKREFTDLVVVNEDR 157 (302)
T ss_pred ccEEEEcCCCCcccHHHHHHHHHHh--CCCceEEecCCchHHHHHHHHHHhcCCceEEEecCc
Confidence 6799999999999999999999986 344445566622 22445444566655555543
No 95
>PF05959 DUF884: Nucleopolyhedrovirus protein of unknown function (DUF884); InterPro: IPR009235 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf146; it is a family of uncharacterised viral proteins.
Probab=23.43 E-value=91 Score=28.28 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=27.8
Q ss_pred ccccCeeEEE----EeCCCCeEEEeeccChHHHHHHHHHcCCc
Q 038384 136 SKIQGVYSVV----IDAEKGTVNISGKVNPNTMLRILDKNGRH 174 (283)
Q Consensus 136 ~KI~GV~sv~----ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~ 174 (283)
+||+|+.-.+ .--++..+.|+|+| |..+++.|.|..+.
T Consensus 129 ~~i~gi~v~~~g~~~~y~Keli~lsGNV-Pa~fv~aL~~~~~n 170 (186)
T PF05959_consen 129 RRIKGITVNENGPERFYPKELISLSGNV-PADFVNALNKKVKN 170 (186)
T ss_pred ceEEEEEEecCCCceEeeeEEEEEECCC-hHHHHHHHHccCCC
Confidence 5677776555 33455669999999 77899999986553
No 96
>TIGR00729 ribonuclease H, mammalian HI/archaeal HII subfamily. Archaeal members of this subfamily of RNase H are designated RNase HII and one has been shown to be active as a monomer. A member from Homo sapiens was characterized as RNase HI, large subunit.
Probab=23.23 E-value=73 Score=28.59 Aligned_cols=15 Identities=53% Similarity=0.957 Sum_probs=10.4
Q ss_pred cCccC-ChHHHHHHHH
Q 038384 27 GRGYP-DISTRRFLRL 41 (283)
Q Consensus 27 GKGyP-D~aTR~fL~~ 41 (283)
|+||| |-.||.||+.
T Consensus 167 GsGY~sd~~t~~~l~~ 182 (206)
T TIGR00729 167 GSGYPSDPRTREWLEE 182 (206)
T ss_pred CCcCCCCHHHHHHHHH
Confidence 67777 5667777765
No 97
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=23.16 E-value=3.3e+02 Score=24.68 Aligned_cols=73 Identities=19% Similarity=0.405 Sum_probs=40.1
Q ss_pred CCceEEEecCcc-----CChH----HHHH-------HHHHHHhcCCcEEEEecCCccchhHHHHhhhccccccccccccC
Q 038384 19 RNRCIVITGRGY-----PDIS----TRRF-------LRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLR 82 (283)
Q Consensus 19 ~~~cILITGKGy-----PD~a----TR~f-------L~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~ 82 (283)
...+|||||.|= =|+. .+.| ++.| ..+..|+++.+++...|.-.....-.- ...+-++..+.
T Consensus 43 ~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l-~~~~kP~Iaav~G~a~GgG~~lal~cD-~~ia~~~a~f~ 120 (243)
T PRK07854 43 SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAI-DAAPVPVIAAINGPAIGAGLQLAMACD-LRVVAPEAYFQ 120 (243)
T ss_pred CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHH-HhCCCCEEEEecCcccccHHHHHHhCC-EEEEcCCCEEe
Confidence 457899999872 0221 1222 2223 235789999999999877544443221 11222333455
Q ss_pred CCCceeeccCcc
Q 038384 83 IPEMHWLGAFPS 94 (283)
Q Consensus 83 ~P~l~WLGv~~~ 94 (283)
.|.++ +|+.+.
T Consensus 121 ~pe~~-~G~~p~ 131 (243)
T PRK07854 121 FPVAK-YGIALD 131 (243)
T ss_pred ccccc-cccCCC
Confidence 56555 466654
No 98
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=22.81 E-value=1.6e+02 Score=29.99 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=39.2
Q ss_pred hhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHh----cCCcEEEEecC
Q 038384 5 DAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEK----LRLPTFCLVDC 56 (283)
Q Consensus 5 dAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~----~~lpi~~L~D~ 56 (283)
++.|.+|++..-.-+..+.|.|=-=..|-+.|.|+..|.+. .++.|-+|+|+
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~~g~~il~AL~~a~~~~~gv~VrvLvD~ 89 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDDEAGREILDALYQAKQQNPELDIKVLVDW 89 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCCchHHHHHHHHHHHHhcCCCcEEEEEEEc
Confidence 46788888776555555555554445688999999999864 58999999997
No 99
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=22.71 E-value=1.8e+02 Score=24.67 Aligned_cols=47 Identities=26% Similarity=0.361 Sum_probs=33.0
Q ss_pred CCceEEEec-CccCC--hHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhhc
Q 038384 19 RNRCIVITG-RGYPD--ISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFG 70 (283)
Q Consensus 19 ~~~cILITG-KGyPD--~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~G 70 (283)
+...|||+| .|.+. ...+.+++.+.+ .++||+|++ +|..|++..--|
T Consensus 42 ~~d~iii~Gg~~~~~d~~~~~~~i~~~~~-~~~PilGIC----~G~Q~la~~~G~ 91 (192)
T PF00117_consen 42 DYDGIIISGGPGSPYDIEGLIELIREARE-RKIPILGIC----LGHQILAHALGG 91 (192)
T ss_dssp TSSEEEEECESSSTTSHHHHHHHHHHHHH-TTSEEEEET----HHHHHHHHHTTH
T ss_pred CCCEEEECCcCCccccccccccccccccc-cceEEEEEe----ehhhhhHHhcCC
Confidence 345677764 57776 445555555544 489999998 999999988655
No 100
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=22.68 E-value=3e+02 Score=27.92 Aligned_cols=11 Identities=9% Similarity=0.404 Sum_probs=4.0
Q ss_pred HHHHHHHHHcC
Q 038384 162 NTMLRILDKNG 172 (283)
Q Consensus 162 ~~vlkkl~k~G 172 (283)
++|.+-+.+-|
T Consensus 300 ~~L~~~F~~~G 310 (562)
T TIGR01628 300 EKLRELFSECG 310 (562)
T ss_pred HHHHHHHHhcC
Confidence 33333333333
No 101
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=22.62 E-value=4e+02 Score=27.04 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=4.5
Q ss_pred hhHHHHHHH
Q 038384 113 GVKFEIEAF 121 (283)
Q Consensus 113 ~~KaEIEAL 121 (283)
.+|.-+|.|
T Consensus 136 a~Kq~MeiL 144 (498)
T KOG4849|consen 136 AVKQTMEIL 144 (498)
T ss_pred HHHHHHHhc
Confidence 445555554
No 102
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=22.53 E-value=1.2e+02 Score=24.16 Aligned_cols=47 Identities=30% Similarity=0.401 Sum_probs=26.6
Q ss_pred HHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCC
Q 038384 8 FHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCD 57 (283)
Q Consensus 8 F~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~D 57 (283)
|..++++.|.....+|.|.+-| .+.|....+|.++..=|-++.+|-|
T Consensus 1 ~~~~~~~~~~~~d~~I~i~A~G---ivvR~iap~l~dK~~DPaVvvvde~ 47 (84)
T PF11760_consen 1 FKDLLRELFRRYDAIIFIMAAG---IVVRAIAPLLKDKDTDPAVVVVDED 47 (84)
T ss_dssp ----HHHHCCC-SEEEEES-HH---HHHHHHHHH---TTT--EEEEE-TT
T ss_pred ChhHHHHHHcCCCeEEEEeCcH---HHHHHhChhhcccCCCCCEEEEeCC
Confidence 4455666666556678888887 8899999999988666777777755
No 103
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=22.53 E-value=1.2e+02 Score=30.64 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=6.2
Q ss_pred CceeeccCccc
Q 038384 85 EMHWLGAFPSD 95 (283)
Q Consensus 85 ~l~WLGv~~~D 95 (283)
.++-.|.+..|
T Consensus 33 ~frVvg~k~qd 43 (409)
T KOG4590|consen 33 TFRVVGRKSQD 43 (409)
T ss_pred ceeEEeeeccc
Confidence 44555666665
No 104
>PF11644 DUF3256: Protein of unknown function (DUF3256); InterPro: IPR021670 This family of proteins with unknown function appears to be restricted to Bacteroidales. ; PDB: 2P3P_B.
Probab=22.43 E-value=8.3 Score=35.15 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=31.6
Q ss_pred ceeeccCccccccc--CCCCcccccCChh-----------hhHHHHHH-Hhhc-CccccccccccccccCeeEEEEe
Q 038384 86 MHWLGAFPSDFEKY--GLPKNCRLKLTVE-----------GVKFEIEA-FCAC-SFSFLSEKYIPSKIQGVYSVVID 147 (283)
Q Consensus 86 l~WLGv~~~Di~~~--~l~~~~llpLt~r-----------~~KaEIEA-L~~~-~~~fl~~~YLp~KI~GV~sv~ID 147 (283)
+.|+|+..+++.+. +.|++-+-=|+.. +.|+|++. |... ..+=|+++||.=++.++.++++=
T Consensus 2 ~~~~~l~AQ~~~~~fv~MPDs~~P~L~~~~R~dliD~~~~k~ka~V~N~~gg~s~m~~lT~dYl~vqls~~st~emK 78 (199)
T PF11644_consen 2 LCVLSLSAQSMRDVFVNMPDSLIPYLNKSNRTDLIDFYEMKMKAEVKNRFGGTSEMEKLTDDYLSVQLSESSTWEMK 78 (199)
T ss_dssp ---------HHHHHHHH--CCCSTTS-HHHHHHHHS--SS-EEEEEE-TTSSEEEEE-EETTEEEEEETTTEEEEEE
T ss_pred eEEEEEecccHHHHHHhCCcchhhhcChhHHHHHHhhhhcCcceeeecccCCEEEEEEeccceEEEEecCCceEEEE
Confidence 56889999998775 5666533333332 55565553 3322 25668889999999999999986
No 105
>PRK11023 outer membrane lipoprotein; Provisional
Probab=22.37 E-value=1.1e+02 Score=27.17 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=21.6
Q ss_pred eeEEEEeCCCCeEEEeeccChHHHHHHHH
Q 038384 141 VYSVVIDAEKGTVNISGKVNPNTMLRILD 169 (283)
Q Consensus 141 V~sv~ID~~~~kVtVtG~Vdp~~vlkkl~ 169 (283)
-..++|..++|.|+++|.|+.++. +++.
T Consensus 144 ~~~I~V~t~~G~V~L~G~v~~~e~-~~a~ 171 (191)
T PRK11023 144 SSNVKVTTENGEVFLLGLVTQREA-KAAA 171 (191)
T ss_pred cceEEEEEECcEEEEEEEeCHHHH-HHHH
Confidence 357888999999999999987544 4443
No 106
>PF13155 Toprim_2: Toprim-like
Probab=22.32 E-value=3e+02 Score=20.64 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=38.9
Q ss_pred chhhHHHHHH--hcccccC-CceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 3 ILDAVFHRLA--NDQYCTR-NRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 3 ~KdAVF~~L~--~~~f~~~-~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
+-|+.|.-|. +.+.... ..++.|.|-| ...+...++.|.+...-.|+..+|.|.-|..-....+
T Consensus 2 v~Eg~iDaLS~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~l~~~~~~~i~l~~DnD~aG~~~~~~~~ 68 (96)
T PF13155_consen 2 VFEGPIDALSYYQLGKENIKDNSLSLAGGG--TLSEKQQIKFLKENPYKKIVLAFDNDEAGRKAAEKLQ 68 (96)
T ss_pred EEeCHHHHHHHHHhCchhcCCceEEEECCc--hHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHHH
Confidence 4456655553 2222221 1235555555 3466778888865533469999999999987666554
No 107
>cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the duplex DNA to remove (relax) both positive and negative supercoils in DNA. These enzymes covalently attach to the 5' ends of the cut DNA, separate the free ends of the cleaved strands, pass another region of the duplex through this gap, then rejoin the ends. These proteins also catenate/ decatenate duplex rings. DNA gyrase is more effective at relaxing supercoils than decatentating DNA. DNA gyrase in addition inserts negative supercoils in the presence of ATP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in strand joining and as a general acid in strand cleava
Probab=22.16 E-value=58 Score=27.37 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=15.2
Q ss_pred cEEEEecCCccchhHHH
Q 038384 49 PTFCLVDCDPYGFDILT 65 (283)
Q Consensus 49 pi~~L~D~DP~Gi~I~~ 65 (283)
.|.+++|+|.+|..|..
T Consensus 74 kiiimtDaD~DG~hI~~ 90 (114)
T cd03366 74 KIIIMTDADVDGAHIRT 90 (114)
T ss_pred eEEEEeCCCCCchHHHH
Confidence 78999999999998865
No 108
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=21.95 E-value=99 Score=23.62 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=14.7
Q ss_pred EeCCCCeE-EEeeccChHHHHHHH
Q 038384 146 IDAEKGTV-NISGKVNPNTMLRIL 168 (283)
Q Consensus 146 ID~~~~kV-tVtG~Vdp~~vlkkl 168 (283)
+|.+...| .++|+++++++++.|
T Consensus 89 ~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 89 LDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp CTTTSCEEEEEESS--HHHHHHHH
T ss_pred EcCCCCEEEEecCCCCHHHHHhhC
Confidence 44444445 579999999998865
No 109
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=21.95 E-value=3.5e+02 Score=24.45 Aligned_cols=47 Identities=19% Similarity=0.303 Sum_probs=27.0
Q ss_pred cCCcEEEEecCCccchhHHHHhhhccccccccccccCCCCceeeccCcc
Q 038384 46 LRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPS 94 (283)
Q Consensus 46 ~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~~P~l~WLGv~~~ 94 (283)
+..|+++.+++...|.-.......- ...+.++..+..|.++ +|+.+.
T Consensus 95 ~~kp~Iaav~G~a~GgG~~lal~cD-~ria~~~a~f~~pe~~-~G~~p~ 141 (259)
T PRK06688 95 LPKPVVAAVNGPAVGVGVSLALACD-LVYASESAKFSLPFAK-LGLCPD 141 (259)
T ss_pred CCCCEEEEECCeeecHHHHHHHhCC-EEEecCCCEecCchhh-cCCCCC
Confidence 5789999999999876433332211 1122233345566655 466543
No 110
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=21.45 E-value=2.5e+02 Score=20.02 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcC-CcEEEEecCCccchhHHH
Q 038384 34 STRRFLRLLIEKLR-LPTFCLVDCDPYGFDILT 65 (283)
Q Consensus 34 aTR~fL~~L~~~~~-lpi~~L~D~DP~Gi~I~~ 65 (283)
.+...++.|.+... -.|+.++|.|.-|..+..
T Consensus 33 ~~~~~~~~l~~~~~~~~Iii~~D~D~~G~~~~~ 65 (76)
T smart00493 33 LKKEIIKLLKRLAKKKEVILATDPDREGEAIAW 65 (76)
T ss_pred cHHHHHHHHHHHhcCCEEEEEcCCChhHHHHHH
Confidence 45667777766533 369999999999988765
No 111
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=21.30 E-value=98 Score=27.90 Aligned_cols=53 Identities=15% Similarity=0.367 Sum_probs=31.5
Q ss_pred HHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCcc--chh
Q 038384 9 HRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPY--GFD 62 (283)
Q Consensus 9 ~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~--Gi~ 62 (283)
-+|+...+....++|++-|--|..++--. +.+|++++++||++++--.|. ||.
T Consensus 54 ~~m~~~~~r~~i~~v~LdGit~agFNiiD-~~~l~~~tg~PVI~V~~~~p~~~~i~ 108 (187)
T PF01949_consen 54 IEMVKRLFRPDIRVVMLDGITFAGFNIID-IERLYEETGLPVIVVMRKEPNLEGIE 108 (187)
T ss_dssp HHHHCCTTTTTEEEEEESSSEETTTEE---HHHHHHHH---EEEEESS---HHHHH
T ss_pred HHHHHhcccCcceEEEECCEeEEeeEEec-HHHHHHHHCCCEEEEEEeCCCHHHHH
Confidence 34555566666788888887777665444 456777778999999888887 543
No 112
>PRK10671 copA copper exporting ATPase; Provisional
Probab=21.28 E-value=1.3e+02 Score=32.55 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=39.3
Q ss_pred cccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeec
Q 038384 135 PSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSC 179 (283)
Q Consensus 135 p~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~ 179 (283)
..+++||.++.+|...+++.|++..+++.+.+.+.+.|-.+.++.
T Consensus 121 L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~~ 165 (834)
T PRK10671 121 LQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAIE 165 (834)
T ss_pred HhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCccccc
Confidence 356889999999999999999888899999999999998887664
No 113
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=21.26 E-value=1.6e+02 Score=26.04 Aligned_cols=56 Identities=13% Similarity=0.317 Sum_probs=36.7
Q ss_pred hhHHHHHHHhhcCccccccccccccccCeeEEEEe-------CCCCeEEEeeccChHHHHHHHHH
Q 038384 113 GVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVID-------AEKGTVNISGKVNPNTMLRILDK 170 (283)
Q Consensus 113 ~~KaEIEAL~~~~~~fl~~~YLp~KI~GV~sv~ID-------~~~~kVtVtG~Vdp~~vlkkl~k 170 (283)
+.+.-+|.|+....++. .|=|++..|+.-=..| ...|||+|||-=..+++-+.+.+
T Consensus 104 ~~~i~L~~la~~~~~~~--~YePE~fPgliyr~~~pk~~~liF~sGkvvitGaks~~~~~~a~~~ 166 (174)
T cd04516 104 KFPIRLEGLAHAHKQFS--SYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKSREEIYQAFEN 166 (174)
T ss_pred CCcccHHHHHHhChhcc--EeCCccCceEEEEecCCcEEEEEeCCCEEEEEecCCHHHHHHHHHH
Confidence 33444566665444443 6888888887522222 45899999999888877666643
No 114
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.19 E-value=1.7e+02 Score=26.84 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=29.0
Q ss_pred hHHHHHHhcccccCCceEEEec----CccC-ChHHH---HHHHHHHHhcCCcEEEE
Q 038384 6 AVFHRLANDQYCTRNRCIVITG----RGYP-DISTR---RFLRLLIEKLRLPTFCL 53 (283)
Q Consensus 6 AVF~~L~~~~f~~~~~cILITG----KGyP-D~aTR---~fL~~L~~~~~lpi~~L 53 (283)
+.|.+|++.-..++...|||+| .+-| ..+++ +||++|.+...+|++++
T Consensus 26 ~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i 81 (253)
T TIGR00619 26 AFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVI 81 (253)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4677777655555667899998 3333 23343 45556655433888766
No 115
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.89 E-value=2.8e+02 Score=18.82 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=15.0
Q ss_pred EEEeeccChHHHHHHHHHcCCce
Q 038384 153 VNISGKVNPNTMLRILDKNGRHA 175 (283)
Q Consensus 153 VtVtG~Vdp~~vlkkl~k~GK~A 175 (283)
|.|.+..+-+.++++|++.|-++
T Consensus 49 v~~~~~~~l~~l~~~l~~~g~~~ 71 (73)
T cd04886 49 LETRGAEHIEEIIAALREAGYDV 71 (73)
T ss_pred EEeCCHHHHHHHHHHHHHcCCEE
Confidence 33333344469999999988644
No 116
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=20.85 E-value=4.8e+02 Score=23.76 Aligned_cols=47 Identities=15% Similarity=0.293 Sum_probs=27.9
Q ss_pred cCCcEEEEecCCccchhHHHHhhhccccccccccccCCCCceeeccCcc
Q 038384 46 LRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPS 94 (283)
Q Consensus 46 ~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~~P~l~WLGv~~~ 94 (283)
+..|+++.+++...|.-..+....- ...+.+...+..|.++ +|+.+.
T Consensus 94 ~~kPvIAav~G~a~GgG~~lalacD-~~ia~~~a~f~~pe~~-~Gl~p~ 140 (258)
T PRK09076 94 FRGVSIAAINGYAMGGGLECALACD-IRIAEEQAQMALPEAS-VGLLPC 140 (258)
T ss_pred CCCCEEEEECCEEecHHHHHHHhCC-EEEecCCCEeeCcccc-cCCCCC
Confidence 4789999999999876443333211 1222333445666666 477654
No 117
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=20.81 E-value=23 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.1
Q ss_pred ceEEEecCccCChHHHHHHHHHHHhc
Q 038384 21 RCIVITGRGYPDISTRRFLRLLIEKL 46 (283)
Q Consensus 21 ~cILITGKGyPD~aTR~fL~~L~~~~ 46 (283)
-++.||.+.||.+..-.||..|.+++
T Consensus 35 ~~~citd~~~~~r~aF~fL~~i~~~F 60 (83)
T PF13774_consen 35 AYLCITDKSYPKRVAFAFLEEIKQEF 60 (83)
T ss_dssp EEEEEEETTS-HHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcchHHHHHHHHHHHH
Confidence 36999999999999999999998763
No 118
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=20.44 E-value=1.1e+02 Score=28.09 Aligned_cols=16 Identities=38% Similarity=1.041 Sum_probs=13.0
Q ss_pred ccc-cccccccCCCCCC
Q 038384 191 YVE-NDHCYYYGDHGYI 206 (283)
Q Consensus 191 ~~~-~~~~~~~g~~~~~ 206 (283)
|+- .+|+.||...||.
T Consensus 121 yLsT~DQ~~FYe~lGYe 137 (225)
T KOG3397|consen 121 YLSTDDQCRFYESLGYE 137 (225)
T ss_pred eeecccchhhhhhhccc
Confidence 443 6899999999998
No 119
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=20.43 E-value=97 Score=26.41 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=23.3
Q ss_pred EEEeCCCCeEEEeeccChHHHHHHHHHc
Q 038384 144 VVIDAEKGTVNISGKVNPNTMLRILDKN 171 (283)
Q Consensus 144 v~ID~~~~kVtVtG~Vdp~~vlkkl~k~ 171 (283)
++|..+.|.||++|.|.-+....++...
T Consensus 45 i~V~v~~G~v~l~G~v~s~~~~~~~~~a 72 (147)
T PRK11198 45 VNVQVEDGKATVSGDAASQEAKEKILLA 72 (147)
T ss_pred ceEEEeCCEEEEEEEeCCHHHHHHHHHH
Confidence 5666679999999999998888888653
No 120
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=20.38 E-value=2.4e+02 Score=24.59 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhhccc
Q 038384 35 TRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSM 72 (283)
Q Consensus 35 TR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~ 72 (283)
.+.+|+...+ .++||+|++ +|+.++..+--|..
T Consensus 89 ~~~~~~~~~~-~~~PilgiC----~G~Q~l~~~~Gg~v 121 (189)
T cd01745 89 ELALLRAALE-RGKPILGIC----RGMQLLNVALGGTL 121 (189)
T ss_pred HHHHHHHHHH-CCCCEEEEc----chHHHHHHHhCCeE
Confidence 3555555543 379999998 68898888876654
No 121
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=20.33 E-value=1.1e+02 Score=26.22 Aligned_cols=64 Identities=22% Similarity=0.328 Sum_probs=40.8
Q ss_pred hhhHHHHHHh-cccccCCceEEEecCccCChHH-HHHHHHHHHh--cCCcEEEEecCCccchhHHHHhh
Q 038384 4 LDAVFHRLAN-DQYCTRNRCIVITGRGYPDIST-RRFLRLLIEK--LRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 4 KdAVF~~L~~-~~f~~~~~cILITGKGyPD~aT-R~fL~~L~~~--~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
-+.+|.++.. ..-...+.++|+.|-=|+.+.. ..|-..+.-+ ..+|+|.+..... |++|+.|..
T Consensus 10 l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~ggn~~-~~DILlTh~ 77 (150)
T cd07380 10 LKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGGNNP-GVDILLTSE 77 (150)
T ss_pred HHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCCccCCCCEEEECCCCC-CCCEEECCC
Confidence 3678888866 2223346789999988887654 4555555544 3467776666554 666666554
No 122
>PRK08139 enoyl-CoA hydratase; Validated
Probab=20.32 E-value=5e+02 Score=23.84 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=26.3
Q ss_pred cCCcEEEEecCCccchh----HHHHhhhccccccccccccCCCCceeeccCc
Q 038384 46 LRLPTFCLVDCDPYGFD----ILTTYRFGSMQMAYDAKFLRIPEMHWLGAFP 93 (283)
Q Consensus 46 ~~lpi~~L~D~DP~Gi~----I~~tYk~GS~~~a~es~~l~~P~l~WLGv~~ 93 (283)
+..|+++.+++...|.- .+|-|.+.+ ++..+..|.++ +|+.+
T Consensus 103 ~~kPvIAav~G~a~GgG~~lalacD~ria~-----~~a~f~~pe~~-~Gl~p 148 (266)
T PRK08139 103 LPQPVIARVHGIATAAGCQLVASCDLAVAA-----DTARFAVPGVN-IGLFC 148 (266)
T ss_pred CCCCEEEEECceeeHHHHHHHHhCCEEEEe-----CCCEEeCcccC-cCCCC
Confidence 57899999999998853 333344433 33345556665 46654
No 123
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=20.24 E-value=4.5e+02 Score=24.06 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=27.8
Q ss_pred cCCcEEEEecCCccchhHHHHhhhccccccccccccCCCCceeeccCcc
Q 038384 46 LRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPS 94 (283)
Q Consensus 46 ~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~~P~l~WLGv~~~ 94 (283)
+..|+++.+++...|.-....... -...+.++..+..|.++.+|+.+.
T Consensus 101 ~~kPvIaav~G~a~GgG~~lala~-D~~ia~~~a~f~~pe~~~~G~~p~ 148 (262)
T PRK06144 101 LRVPTIAAIAGACVGGGAAIAAAC-DLRIATPSARFGFPIARTLGNCLS 148 (262)
T ss_pred CCCCEEEEECCeeeehHHHHHHhC-CEEEecCCCEeechhHHhccCCCC
Confidence 578999999999987633322211 112223334456666665677654
No 124
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=20.16 E-value=3.7e+02 Score=27.20 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=7.8
Q ss_pred EEEeeccChHHHHHHHH
Q 038384 153 VNISGKVNPNTMLRILD 169 (283)
Q Consensus 153 VtVtG~Vdp~~vlkkl~ 169 (283)
|+.+-.-++++.++.+.
T Consensus 331 V~f~~~~~A~~A~~~~~ 347 (562)
T TIGR01628 331 VCFSNPEEANRAVTEMH 347 (562)
T ss_pred EEeCCHHHHHHHHHHhc
Confidence 44443344555555443
No 125
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=20.12 E-value=2.4e+02 Score=24.05 Aligned_cols=62 Identities=19% Similarity=0.137 Sum_probs=38.4
Q ss_pred hhHHHHHHHhhcCccccccccccccccCeeEEEEeCC--CCeEEEeeccChHHHHHHHHHcCC----ceeeecc
Q 038384 113 GVKFEIEAFCACSFSFLSEKYIPSKIQGVYSVVIDAE--KGTVNISGKVNPNTMLRILDKNGR----HAEFSCL 180 (283)
Q Consensus 113 ~~KaEIEAL~~~~~~fl~~~YLp~KI~GV~sv~ID~~--~~kVtVtG~Vdp~~vlkkl~k~GK----~Ae~w~~ 180 (283)
-.|.|+|-|++.-..+ +..++.==--+++|.. .+...|.|.+ -.++++++-..+. .-++|=+
T Consensus 44 f~k~ELe~L~~~lp~~-----~~~~lrLPIile~~~~~~~g~~~V~g~~-e~k~i~~ilg~~~~~~~~~~l~i~ 111 (132)
T PF01886_consen 44 FDKEELERLAEILPEY-----EWSKLRLPIILEIDPTLGEGSYRVRGKE-EVKAISKILGKEREFEEEDELYIY 111 (132)
T ss_pred EcHHHHHHHHHhCCHH-----HHhceeccEEEEEeccCCCceEEEeCHH-HHHHHHHHhCCCcccccCCeEEEc
Confidence 5688999998854444 2233322233555554 8999999999 6667777754443 3455544
No 126
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=20.12 E-value=1.4e+02 Score=25.98 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=28.8
Q ss_pred CceEEEecCccCChH--------HHHHHHHHHHhcCCcEEEEecCCccchhHHHHh
Q 038384 20 NRCIVITGRGYPDIS--------TRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTY 67 (283)
Q Consensus 20 ~~cILITGKGyPD~a--------TR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tY 67 (283)
...|+|+|-|.++-+ .+.+++...+. ++||+|++ .|+.++..+
T Consensus 37 ~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pilGiC----~G~q~l~~~ 87 (198)
T cd01748 37 ADKLILPGVGAFGDAMANLRERGLIEALKEAIAS-GKPFLGIC----LGMQLLFES 87 (198)
T ss_pred CCEEEECCCCcHHHHHHHHHHcChHHHHHHHHHC-CCcEEEEC----HHHHHhccc
Confidence 467999998776543 23444443333 78999998 677777665
No 127
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=20.03 E-value=4.4e+02 Score=24.02 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=26.8
Q ss_pred cCCcEEEEecCCccchhH----HHHhhhccccccccccccCCCCceeeccCcc
Q 038384 46 LRLPTFCLVDCDPYGFDI----LTTYRFGSMQMAYDAKFLRIPEMHWLGAFPS 94 (283)
Q Consensus 46 ~~lpi~~L~D~DP~Gi~I----~~tYk~GS~~~a~es~~l~~P~l~WLGv~~~ 94 (283)
+..|+++.+++...|.-. +|=|+..+ ++..+..|.++ +|+.+.
T Consensus 97 ~~kPvIaav~G~a~GgG~~lalacD~ria~-----~~a~f~~pe~~-~Gl~p~ 143 (261)
T PRK08138 97 CPKPVIAAVNGYALGGGCELAMHADIIVAG-----ESASFGQPEIK-VGLMPG 143 (261)
T ss_pred CCCCEEEEEccEEEcHHHHHHHhCCEEEec-----CCCEeeCcccc-cccCCC
Confidence 578999999999987632 23344433 33345666666 576543
Done!