Query 038384
Match_columns 283
No_of_seqs 268 out of 524
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d3y_A DNA topoisomerase VI A 100.0 6E-43 2.1E-47 326.5 2.8 137 3-142 129-297 (301)
2 2zbk_A Type II DNA topoisomera 100.0 2.5E-37 8.4E-42 297.9 3.9 142 3-144 209-388 (389)
3 2q2e_A Type II DNA topoisomera 100.0 4.5E-37 1.5E-41 293.8 5.3 138 3-143 202-368 (369)
4 3iwl_A Copper transport protei 98.1 4.3E-06 1.5E-10 59.3 5.1 44 136-180 24-67 (68)
5 1cc8_A Protein (metallochapero 97.8 2.5E-05 8.5E-10 55.5 5.6 44 136-179 27-71 (73)
6 2crl_A Copper chaperone for su 97.5 0.00016 5.5E-09 55.5 5.7 47 135-181 40-86 (98)
7 4a4j_A Pacszia, cation-transpo 97.3 0.00033 1.1E-08 48.7 5.5 42 136-177 25-68 (69)
8 3dxs_X Copper-transporting ATP 97.2 0.00046 1.6E-08 48.7 4.7 45 136-180 25-72 (74)
9 2xmm_A SSR2857 protein, ATX1; 97.0 0.00073 2.5E-08 45.0 4.1 41 136-176 24-64 (64)
10 2roe_A Heavy metal binding pro 96.7 0.0014 4.7E-08 44.8 4.0 42 136-177 23-64 (66)
11 3fry_A Probable copper-exporti 96.7 0.0017 5.7E-08 46.2 4.5 44 136-181 28-71 (73)
12 3iot_A Maltose-binding protein 96.5 0.00038 1.3E-08 65.4 0.0 16 155-170 351-366 (449)
13 1fvq_A Copper-transporting ATP 96.4 0.0043 1.5E-07 42.2 4.5 45 136-180 25-71 (72)
14 1qup_A Superoxide dismutase 1 96.3 0.0058 2E-07 54.2 6.5 47 136-182 28-74 (222)
15 2k2p_A Uncharacterized protein 96.2 0.0042 1.4E-07 46.2 4.2 40 136-175 45-84 (85)
16 2l3m_A Copper-ION-binding prot 96.1 0.0087 3E-07 40.7 5.2 41 136-176 28-71 (71)
17 1cpz_A Protein (COPZ); copper 95.7 0.02 7E-07 38.2 5.5 42 136-177 23-67 (68)
18 1jk9_B CCS, copper chaperone f 95.7 0.014 4.6E-07 52.8 5.7 46 136-181 29-74 (249)
19 1opz_A Potential copper-transp 95.6 0.016 5.5E-07 39.4 4.7 43 136-178 29-74 (76)
20 2xmw_A PACS-N, cation-transpor 95.6 0.024 8.3E-07 38.1 5.6 42 136-177 26-69 (71)
21 1aw0_A Menkes copper-transport 95.6 0.016 5.4E-07 39.3 4.5 42 136-177 26-70 (72)
22 1osd_A MERP, hypothetical prot 95.5 0.027 9.3E-07 38.1 5.6 42 136-177 26-70 (72)
23 1q8l_A Copper-transporting ATP 95.5 0.027 9.3E-07 40.4 5.7 45 136-180 32-79 (84)
24 2g9o_A Copper-transporting ATP 95.4 0.025 8.5E-07 41.8 5.6 47 135-181 25-77 (90)
25 1p6t_A Potential copper-transp 95.4 0.019 6.6E-07 45.2 5.1 46 136-181 97-145 (151)
26 3cjk_B Copper-transporting ATP 95.4 0.035 1.2E-06 38.2 5.8 45 136-180 25-72 (75)
27 2qif_A Copper chaperone COPZ; 95.3 0.031 1.1E-06 36.7 5.2 40 136-175 25-67 (69)
28 2kt2_A Mercuric reductase; nme 95.0 0.039 1.3E-06 37.2 5.1 42 136-177 23-66 (69)
29 1yg0_A COP associated protein; 94.9 0.05 1.7E-06 36.0 5.4 40 136-175 24-65 (66)
30 2ew9_A Copper-transporting ATP 94.8 0.033 1.1E-06 43.4 4.8 43 136-178 103-148 (149)
31 1yjr_A Copper-transporting ATP 94.6 0.044 1.5E-06 37.3 4.4 42 136-177 27-71 (75)
32 2ldi_A Zinc-transporting ATPas 94.6 0.073 2.5E-06 35.3 5.5 41 135-175 25-68 (71)
33 1y3j_A Copper-transporting ATP 94.3 0.049 1.7E-06 37.8 4.2 44 136-179 26-72 (77)
34 2kyz_A Heavy metal binding pro 94.2 0.039 1.3E-06 37.5 3.4 39 136-176 24-62 (67)
35 1kvi_A Copper-transporting ATP 93.8 0.062 2.1E-06 37.4 4.0 42 136-177 31-75 (79)
36 1jww_A Potential copper-transp 93.3 0.084 2.9E-06 36.4 3.9 45 136-180 26-73 (80)
37 1mwy_A ZNTA; open-faced beta-s 93.2 0.18 6.1E-06 34.5 5.5 41 136-176 26-67 (73)
38 2rop_A Copper-transporting ATP 93.0 0.15 5.2E-06 42.7 5.8 47 135-181 144-193 (202)
39 2kkh_A Putative heavy metal tr 92.3 0.25 8.7E-06 36.2 5.6 45 136-180 39-86 (95)
40 2ofg_X Zinc-transporting ATPas 92.1 0.26 8.9E-06 37.8 5.7 42 136-177 31-75 (111)
41 2aj0_A Probable cadmium-transp 91.3 0.21 7.1E-06 34.1 3.9 41 136-180 26-68 (71)
42 2ew9_A Copper-transporting ATP 83.3 1.4 4.7E-05 34.0 4.6 44 136-179 27-73 (149)
43 1p6t_A Potential copper-transp 73.0 4.2 0.00014 31.4 4.5 40 136-175 29-71 (151)
44 2rop_A Copper-transporting ATP 66.1 7.2 0.00025 32.2 4.8 36 136-171 43-81 (202)
45 3j09_A COPA, copper-exporting 64.7 5.7 0.0002 40.4 4.6 44 135-178 24-70 (723)
46 2zqe_A MUTS2 protein; alpha/be 45.9 48 0.0017 24.5 5.9 36 21-59 35-70 (83)
47 3f6p_A Transcriptional regulat 34.8 59 0.002 23.4 4.9 38 22-59 48-85 (120)
48 2qip_A Protein of unknown func 33.9 29 0.00098 28.4 3.2 31 151-181 111-142 (165)
49 1kaf_A Transcription regulator 32.3 58 0.002 26.1 4.6 49 126-177 33-81 (108)
50 3tsh_A Pollen allergen PHL P 4 30.8 1.3E+02 0.0045 28.7 7.8 119 35-175 8-143 (500)
51 2cpq_A FragIle X mental retard 30.5 80 0.0027 24.2 5.0 31 138-169 43-73 (91)
52 3qd7_X Uncharacterized protein 29.3 1E+02 0.0036 25.0 5.9 36 22-59 79-119 (137)
53 2fcj_A Small toprim domain pro 28.2 62 0.0021 26.0 4.2 45 22-68 27-71 (119)
54 3mm4_A Histidine kinase homolo 28.2 1.1E+02 0.0038 24.8 6.0 50 21-70 120-174 (206)
55 4dad_A Putative pilus assembly 27.9 91 0.0031 23.0 5.0 49 21-70 68-117 (146)
56 2kgs_A Uncharacterized protein 27.0 38 0.0013 27.1 2.8 34 141-174 7-45 (132)
57 2iss_D Glutamine amidotransfer 27.0 34 0.0012 28.6 2.6 46 20-70 58-110 (208)
58 2j48_A Two-component sensor ki 26.9 1.1E+02 0.0037 21.0 5.0 36 23-58 48-86 (119)
59 1w94_A MIL, probable BRIX-doma 26.7 34 0.0012 28.5 2.5 27 23-49 2-28 (156)
60 3fau_A NEDD4-binding protein 2 26.3 67 0.0023 23.2 3.8 24 22-45 37-65 (82)
61 3h5i_A Response regulator/sens 26.0 95 0.0032 22.9 4.8 6 51-56 53-58 (140)
62 1t6t_1 Putative protein; struc 25.6 34 0.0012 27.5 2.2 30 37-68 53-83 (118)
63 3bpd_A Uncharacterized protein 25.6 32 0.0011 27.2 2.0 37 137-173 30-74 (100)
64 3p5m_A Enoyl-COA hydratase/iso 25.4 70 0.0024 27.9 4.4 42 19-62 50-107 (255)
65 2a9o_A Response regulator; ess 25.3 1.2E+02 0.004 21.3 5.0 34 23-56 48-81 (120)
66 2raq_A Conserved protein MTH88 25.3 41 0.0014 26.5 2.5 27 147-173 47-74 (97)
67 2kgs_A Uncharacterized protein 25.2 21 0.00071 28.7 0.8 28 143-170 78-105 (132)
68 1k66_A Phytochrome response re 24.6 1.6E+02 0.0054 21.4 5.8 36 22-57 64-102 (149)
69 3mso_A Steroid delta-isomerase 24.5 61 0.0021 25.6 3.5 33 137-169 95-127 (143)
70 2tmg_A Protein (glutamate dehy 24.4 1.7E+02 0.0057 28.1 7.1 45 21-68 210-259 (415)
71 3kto_A Response regulator rece 24.3 1.5E+02 0.005 21.7 5.5 39 21-59 51-92 (136)
72 3t8y_A CHEB, chemotaxis respon 24.1 1.6E+02 0.0056 22.5 6.0 49 22-70 73-122 (164)
73 2x3d_A SSO6206; unknown functi 23.7 43 0.0015 26.3 2.3 37 137-173 29-73 (96)
74 3jte_A Response regulator rece 23.1 1.1E+02 0.0036 22.5 4.5 33 23-55 52-85 (143)
75 4e7p_A Response regulator; DNA 23.1 1.1E+02 0.0038 22.8 4.7 35 23-57 69-104 (150)
76 1gpw_B Amidotransferase HISH; 23.0 58 0.002 26.8 3.3 45 19-68 42-94 (201)
77 1k68_A Phytochrome response re 22.8 1.1E+02 0.0037 22.0 4.4 35 23-57 58-95 (140)
78 3nkl_A UDP-D-quinovosamine 4-d 22.5 98 0.0034 23.5 4.3 34 23-59 7-40 (141)
79 3eqz_A Response regulator; str 22.4 1.4E+02 0.0049 21.3 5.1 38 21-58 47-85 (135)
80 3fwy_A Light-independent proto 22.4 74 0.0025 28.8 4.1 41 20-62 48-90 (314)
81 3lua_A Response regulator rece 21.9 1.4E+02 0.0047 21.8 4.9 49 21-70 51-103 (140)
82 3f6c_A Positive transcription 21.8 1.1E+02 0.0038 22.0 4.4 33 23-55 49-82 (134)
83 3eul_A Possible nitrate/nitrit 21.5 1.2E+02 0.004 22.7 4.5 35 23-57 64-99 (152)
84 2rdm_A Response regulator rece 21.4 1.4E+02 0.0048 21.3 4.8 33 24-56 54-88 (132)
85 3hdg_A Uncharacterized protein 21.2 95 0.0033 22.6 3.9 6 51-56 54-59 (137)
86 1vi6_A 30S ribosomal protein S 21.1 41 0.0014 29.6 2.0 16 46-61 137-154 (208)
87 2zay_A Response regulator rece 21.0 1.3E+02 0.0043 22.2 4.6 15 29-43 61-75 (147)
88 1zgz_A Torcad operon transcrip 20.9 1.3E+02 0.0043 21.3 4.4 31 25-55 51-81 (122)
89 3nhm_A Response regulator; pro 20.9 1.5E+02 0.0052 21.2 4.9 34 23-56 50-86 (133)
90 3kht_A Response regulator; PSI 20.9 1.1E+02 0.0039 22.4 4.3 34 23-56 54-90 (144)
91 3i42_A Response regulator rece 20.8 1.3E+02 0.0043 21.5 4.5 38 23-60 50-90 (127)
92 1ka9_H Imidazole glycerol phos 20.8 53 0.0018 27.1 2.6 43 20-67 41-91 (200)
93 1dbw_A Transcriptional regulat 20.5 2.1E+02 0.0071 20.4 5.6 48 22-70 49-97 (126)
94 3hzh_A Chemotaxis response reg 20.2 1.5E+02 0.005 22.4 4.9 35 23-57 86-121 (157)
95 3bbn_B Ribosomal protein S2; s 20.2 33 0.0011 30.6 1.1 17 46-62 179-197 (231)
No 1
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=100.00 E-value=6e-43 Score=326.51 Aligned_cols=137 Identities=31% Similarity=0.601 Sum_probs=120.8
Q ss_pred chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccch-hHHHHhhhcccccccccccc
Q 038384 3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGF-DILTTYRFGSMQMAYDAKFL 81 (283)
Q Consensus 3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi-~I~~tYk~GS~~~a~es~~l 81 (283)
||||||++|++++|+++.+|||||||||||++||+||++|++++++|||+|+|+||||+ +|+++|++||.+++|+++.+
T Consensus 129 EK~avF~rL~~~~~~~~~~~ilIt~kGyPd~aTR~fl~~L~~~~~lpv~~l~D~DP~G~~~I~~tyk~GS~~~~~~~~~l 208 (301)
T 1d3y_A 129 ETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKL 208 (301)
T ss_dssp SCHHHHHHHHHTTHHHHTTEEEEECCSSCCHHHHHHHHHHHHHHTCCEEEECCBSHHHHHTHHHHHHC---------CTT
T ss_pred echHHHHHHHHhcccccCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCChHHHHHHHHHHHhCchhhccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCceeeccCcccccccCCCCcccccCChh-------------------------------hhHHHHHHHhhcCccccc
Q 038384 82 RIPEMHWLGAFPSDFEKYGLPKNCRLKLTVE-------------------------------GVKFEIEAFCACSFSFLS 130 (283)
Q Consensus 82 ~~P~l~WLGv~~~Di~~~~l~~~~llpLt~r-------------------------------~~KaEIEAL~~~~~~fl~ 130 (283)
+||+++|+||+++|+.+++++ .++||.+ ++|+|||||+++|++|++
T Consensus 209 ~~p~~~wlGv~~sdi~~~~~~---~~~Lt~~D~~~l~~ll~~~~~~~~~~~w~~el~~ml~~~~KaEieal~~~g~~f~~ 285 (301)
T 1d3y_A 209 SIPAARLIGVTPQDIIDYDLP---THPLKEQDIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVV 285 (301)
T ss_dssp CCTTCEEEESCHHHHHHTTCC---CEECCHHHHHHHHHHHHHCHHHHTCHHHHHHHHHHHHHTEEBCGGGGGGGCTTHHH
T ss_pred cCCccEEcCCCHHHHHhcccc---cCcCCHHHHHHHHHHhhCccccCcHHHHHHHHHHHHHhCCEEEEehhhhcCccchH
Confidence 999999999999999988764 4577665 779999999999999999
Q ss_pred cccccccccCee
Q 038384 131 EKYIPSKIQGVY 142 (283)
Q Consensus 131 ~~YLp~KI~GV~ 142 (283)
++||++||+..+
T Consensus 286 ~~yl~~Ki~~~~ 297 (301)
T 1d3y_A 286 NTYLPEKIKDES 297 (301)
T ss_dssp HTHHHHHHHCGG
T ss_pred HHHHHHHHhcCC
Confidence 999999998765
No 2
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=100.00 E-value=2.5e-37 Score=297.86 Aligned_cols=142 Identities=36% Similarity=0.592 Sum_probs=121.6
Q ss_pred chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhhccccccccccccC
Q 038384 3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLR 82 (283)
Q Consensus 3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~ 82 (283)
||||||++|++++|+.+.+|||||||||||++||+||++|++++++|||+|+|+||||++|++||+|||.+++|+++.++
T Consensus 209 EK~avF~rL~~~~~~~~~~~ilIt~kG~Pd~aTR~fL~~L~~~~~lpv~~l~D~DP~Gi~I~~tyk~GS~~~a~~~~~l~ 288 (389)
T 2zbk_A 209 EKDAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELKLPVYILTDADPYGWYIFSVFRIGSISLSYESERLA 288 (389)
T ss_dssp SCHHHHHHHHTTTHHHHTTCEEEECCSSCCTTHHHHHHHHHHHSCCCEEEECCSSHHHHHHHHHHTSCSCC-----CCCS
T ss_pred ecHHHHHHHHHhCcCccCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCChhhhhhHHHHhhcchhhhhhhhccc
Confidence 79999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCcccccccCCCCc-----c-----cccCC-----------------h---h--------hhHHHHHHHhhc
Q 038384 83 IPEMHWLGAFPSDFEKYGLPKN-----C-----RLKLT-----------------V---E--------GVKFEIEAFCAC 124 (283)
Q Consensus 83 ~P~l~WLGv~~~Di~~~~l~~~-----~-----llpLt-----------------~---r--------~~KaEIEAL~~~ 124 (283)
+|+++|+|++++|+.+++++.. . ...|. . + ++|+|||||.++
T Consensus 289 ~P~l~~lG~~~~di~~~~~~~~~Lt~~Dr~~~~~k~l~~ll~~~~~~~~~~~~~~~~w~~el~~Ml~~~~KaE~Eal~~~ 368 (389)
T 2zbk_A 289 TPDAKFLGVSMGDIFGNSRKKPYLSEAERKNYIIKAKDADIKRAEEIKNYEWFKTKAWQEEINTFLQRKAKLEIEAMASK 368 (389)
T ss_dssp CSSCEECCCCHHHHHCCSSSCCSSCHHHHHHHCEECCHHHHHHHHHHTTSTTTTTTTTTHHHHHHHHHCEECCHHHHHTT
T ss_pred CCceEEcCCcHHHHHhcccccccCChhhhhhHHHHHHHHHHhchhhcccchhccCHHHHHHHHHHHHhCceeeeHHhhhc
Confidence 9999999999999998754321 1 11110 0 0 779999999999
Q ss_pred CccccccccccccccCeeEE
Q 038384 125 SFSFLSEKYIPSKIQGVYSV 144 (283)
Q Consensus 125 ~~~fl~~~YLp~KI~GV~sv 144 (283)
|++|++++||++||+..+++
T Consensus 369 g~~fl~~~yl~~Ki~~~~~i 388 (389)
T 2zbk_A 369 GLKFLAFQYIPEKITNKDYI 388 (389)
T ss_dssp CTHHHHHTHHHHHHHHTCSB
T ss_pred CchhhHHHHHHHHHhcCCCc
Confidence 99999999999999876543
No 3
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=4.5e-37 Score=293.75 Aligned_cols=138 Identities=28% Similarity=0.533 Sum_probs=119.4
Q ss_pred chhhHHHHHHhcccccCCceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhhccccccccccccC
Q 038384 3 ILDAVFHRLANDQYCTRNRCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLR 82 (283)
Q Consensus 3 ~KdAVF~~L~~~~f~~~~~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~ 82 (283)
||||||++|++++|++..+|||||||||||++||+||++|++++++|||+|+|+||||++|++||+|||.+++|+++.++
T Consensus 202 Ek~avF~~L~~~~~~~~~~~ilIt~kG~Pd~atR~~L~~L~~~~~~pv~~l~D~Dp~Gi~I~~tyk~GS~~~~~~~~~l~ 281 (369)
T 2q2e_A 202 ETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEELGIPVAVFTDGDPWSYRIYASVAYGAIKSAHLSEFMA 281 (369)
T ss_dssp CCTTHHHHHHHSCCTTTTCCCEEECCSSCCHHHHHHHHHHTTSSCCCEEEECCSSHHHHTTTHHHHSCC--------CCC
T ss_pred echHHHHHHHHhccCccCCEEEEECCCCCCHHHHHHHHHHHHhcCCcEEEEecCChhHHHHHHHHhccchhhhhhhcccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCceeeccCcccccccCCCCcccccCChh-----------------------------hhHHHHHHHhhcCcccccccc
Q 038384 83 IPEMHWLGAFPSDFEKYGLPKNCRLKLTVE-----------------------------GVKFEIEAFCACSFSFLSEKY 133 (283)
Q Consensus 83 ~P~l~WLGv~~~Di~~~~l~~~~llpLt~r-----------------------------~~KaEIEAL~~~~~~fl~~~Y 133 (283)
+|+++|+|++++|+.+++++. .+||.+ ++|+|||||.++|++|++++|
T Consensus 282 ~p~~~~lgm~~~d~~~~~~~~---~~Lt~~D~k~l~~ll~~~~~~~~~w~~el~~ml~~~~K~EqEal~~~g~~~~~~~y 358 (369)
T 2q2e_A 282 TPAAKFLGLQPSDIVEYELST---DKLTEQDVSALRSELSDPRFESDYWKEQIQLQLDIGKKAEQQAFAGKGLDFVTEVY 358 (369)
T ss_dssp CTTCBCCSSCTTTTTSSCCCC---CCCCHHHHHHHTTTTSSCSSCCTTTTHHHHHHHHHCCCCCSGGGGGGCTTSTTTTH
T ss_pred CCccEECCCCHHHHHhccccc---CCCCHHHHHHHHHHhhCcccCCHHHHHHHHHHHHhCcEeeehhhhhcCchhhHHHH
Confidence 999999999999999876532 344333 789999999999999999999
Q ss_pred ccccccCeeE
Q 038384 134 IPSKIQGVYS 143 (283)
Q Consensus 134 Lp~KI~GV~s 143 (283)
|++||+..++
T Consensus 359 l~~Ki~~~~~ 368 (369)
T 2q2e_A 359 LPNRLKEMGM 368 (369)
T ss_dssp HHHHHHSCC-
T ss_pred HHHHHhcCCc
Confidence 9999987764
No 4
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=98.08 E-value=4.3e-06 Score=59.33 Aligned_cols=44 Identities=30% Similarity=0.422 Sum_probs=41.7
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeecc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCL 180 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~ 180 (283)
++++|| +++||...++|+|++.++++.|++.++++|..+++|+.
T Consensus 24 ~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 24 NKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp HHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred HcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence 458999 99999999999999999999999999999999999974
No 5
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=97.84 E-value=2.5e-05 Score=55.54 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=41.6
Q ss_pred cccc-CeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeec
Q 038384 136 SKIQ-GVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSC 179 (283)
Q Consensus 136 ~KI~-GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~ 179 (283)
++++ ||.+++||...++++|++.++++.+++.+.++|.++++|.
T Consensus 27 ~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 27 TKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp HTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred HhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence 4589 9999999999999999999999999999999999999985
No 6
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.00016 Score=55.49 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=43.8
Q ss_pred cccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeeccc
Q 038384 135 PSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLE 181 (283)
Q Consensus 135 p~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~~ 181 (283)
+++++||.+++||...++|+|++.++++.|++.|+++|.++++|...
T Consensus 40 L~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~ 86 (98)
T 2crl_A 40 LQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG 86 (98)
T ss_dssp TTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESC
T ss_pred HHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCC
Confidence 46699999999999999999999999999999999999999999754
No 7
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=97.34 E-value=0.00033 Score=48.70 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=39.3
Q ss_pred ccccCeeEEEEeCCCCeEEEe--eccChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNIS--GKVNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVt--G~Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.+++||...++++|+ +.++++.|++.+++.|-.+++
T Consensus 25 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~ 68 (69)
T 4a4j_A 25 AKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 68 (69)
T ss_dssp HTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEE
T ss_pred hcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEe
Confidence 569999999999999999999 889999999999999998875
No 8
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=97.16 E-value=0.00046 Score=48.72 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=40.9
Q ss_pred ccccCeeEEEEeCCCCeEEEee---ccChHHHHHHHHHcCCceeeecc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISG---KVNPNTMLRILDKNGRHAEFSCL 180 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG---~Vdp~~vlkkl~k~GK~Ae~w~~ 180 (283)
++++||.+++||...++|+|+. .++.+.|++.|++.|-.++++..
T Consensus 25 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 72 (74)
T 3dxs_X 25 MNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILAE 72 (74)
T ss_dssp HTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEEE
T ss_pred hcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEccC
Confidence 5699999999999999999964 48999999999999999999875
No 9
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=96.98 E-value=0.00073 Score=45.01 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=37.2
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCcee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAE 176 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae 176 (283)
.+++||.++++|...++++|++.++.+.+.+.+.+.|-.+|
T Consensus 24 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~~ 64 (64)
T 2xmm_A 24 QNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEVE 64 (64)
T ss_dssp HHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCCC
T ss_pred hcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCCC
Confidence 45899999999999999999999999999999999997654
No 10
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=96.74 E-value=0.0014 Score=44.79 Aligned_cols=42 Identities=29% Similarity=0.577 Sum_probs=38.3
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.++++|...++++|.+.++++.+.+.+.+.|-.++.
T Consensus 23 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~ 64 (66)
T 2roe_A 23 KKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEV 64 (66)
T ss_dssp HTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEE
T ss_pred HcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEe
Confidence 568999999999999999999999999999999999987653
No 11
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=96.72 E-value=0.0017 Score=46.20 Aligned_cols=44 Identities=11% Similarity=0.232 Sum_probs=40.7
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeeccc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLE 181 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~~ 181 (283)
++ +||.+++||...++|+|++. +++.|++.|++.|-.++++...
T Consensus 28 ~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~~~ 71 (73)
T 3fry_A 28 EE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRSSA 71 (73)
T ss_dssp HH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECCSS
T ss_pred cc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecCcc
Confidence 56 89999999999999999999 9999999999999999988754
No 12
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.55 E-value=0.00038 Score=65.44 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=10.3
Q ss_pred EeeccChHHHHHHHHH
Q 038384 155 ISGKVNPNTMLRILDK 170 (283)
Q Consensus 155 VtG~Vdp~~vlkkl~k 170 (283)
++|.+|+++.|+++.+
T Consensus 351 ~~G~~~~eeal~~~~~ 366 (449)
T 3iot_A 351 ASGRQTVDAALAAAQT 366 (449)
T ss_dssp HHTSSCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHH
Confidence 3566777777666654
No 13
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=96.36 E-value=0.0043 Score=42.22 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=39.6
Q ss_pred ccccCeeEEEEeCCCCeEEEee--ccChHHHHHHHHHcCCceeeecc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISG--KVNPNTMLRILDKNGRHAEFSCL 180 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG--~Vdp~~vlkkl~k~GK~Ae~w~~ 180 (283)
.+++||.++++|...++++|+. .++.+.+.+.+.+.|-.+++|..
T Consensus 25 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~~ 71 (72)
T 1fvq_A 25 RALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILRD 71 (72)
T ss_dssp HTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEEC
T ss_pred hcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEccC
Confidence 4589999999999999999984 57789999999999999998853
No 14
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=96.35 E-value=0.0058 Score=54.19 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=43.8
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeecccc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLEF 182 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~~~ 182 (283)
++++||.+++||...++++|++.+++++|++.++++|.+|++|....
T Consensus 28 ~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~ 74 (222)
T 1qup_A 28 KNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGK 74 (222)
T ss_dssp TTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSC
T ss_pred hcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCC
Confidence 56999999999999999999999999999999999999999998653
No 15
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=96.24 E-value=0.0042 Score=46.16 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=36.7
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCce
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHA 175 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~A 175 (283)
++++||.+++||...++++|++.++++.|++.+.+.|-.+
T Consensus 45 ~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~ 84 (85)
T 2k2p_A 45 EKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP 84 (85)
T ss_dssp HHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred hcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 4589999999999999999999999999999999999654
No 16
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=96.14 E-value=0.0087 Score=40.65 Aligned_cols=41 Identities=20% Similarity=0.469 Sum_probs=35.6
Q ss_pred ccccCeeEEEEeCCCCeEEEe---eccChHHHHHHHHHcCCcee
Q 038384 136 SKIQGVYSVVIDAEKGTVNIS---GKVNPNTMLRILDKNGRHAE 176 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVt---G~Vdp~~vlkkl~k~GK~Ae 176 (283)
.+++||.++.+|...++++|+ +.++.+.+++.+.+.|-.+|
T Consensus 28 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~ 71 (71)
T 2l3m_A 28 KELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDVQ 71 (71)
T ss_dssp HTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEEC
T ss_pred HcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCCC
Confidence 458999999999999999997 45788999999999997654
No 17
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=95.72 E-value=0.02 Score=38.18 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=36.5
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.++++|...++++|+.. ++.+.+.+.+.+.|-.+++
T Consensus 23 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 23 GRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp HTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred HcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence 55899999999999999999864 7889999999999977664
No 18
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=95.67 E-value=0.014 Score=52.83 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=43.1
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceeeeccc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEFSCLE 181 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~w~~~ 181 (283)
++++||.+++||...++++|++.++++.|++.|+++|.+|+++...
T Consensus 29 ~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~ 74 (249)
T 1jk9_B 29 KNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAG 74 (249)
T ss_dssp TTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEES
T ss_pred hccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCC
Confidence 5699999999999999999999999999999999999999998764
No 19
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=95.62 E-value=0.016 Score=39.43 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=37.7
Q ss_pred ccccCeeEEEEeCCCCeEEEe---eccChHHHHHHHHHcCCceeee
Q 038384 136 SKIQGVYSVVIDAEKGTVNIS---GKVNPNTMLRILDKNGRHAEFS 178 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVt---G~Vdp~~vlkkl~k~GK~Ae~w 178 (283)
.++.||.++.+|...++++|+ +.++.+.+.+.+.+.|-.++.|
T Consensus 29 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 74 (76)
T 1opz_A 29 KRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE 74 (76)
T ss_dssp HTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred hcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence 458999999999999999997 4578899999999999888766
No 20
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=95.61 E-value=0.024 Score=38.11 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=35.5
Q ss_pred ccccCeeEEEEeCCCCeEEEeec--cChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK--VNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~--Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.++++|...++++|+.. ++.+.+++.+.+.|-.+++
T Consensus 26 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~ 69 (71)
T 2xmw_A 26 AKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 69 (71)
T ss_dssp HTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEE
T ss_pred hcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCcee
Confidence 56899999999999999999744 7888999999999987654
No 21
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=95.58 E-value=0.016 Score=39.32 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=36.6
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.++++|...++++|+.. ++.+.+++.+.+.|-.+++
T Consensus 26 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1aw0_A 26 SKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70 (72)
T ss_dssp HTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred hcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEe
Confidence 55899999999999999999865 6888999999999977654
No 22
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=95.53 E-value=0.027 Score=38.09 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.2
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.++++|...++++|+.. ++.+.+++.+.+.|-.+++
T Consensus 26 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1osd_A 26 SKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV 70 (72)
T ss_dssp HTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEE
T ss_pred hcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 45899999999999999999754 6888999999999976654
No 23
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=95.46 E-value=0.027 Score=40.40 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=39.3
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceeeecc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEFSCL 180 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~w~~ 180 (283)
.+++||.++++|...++++|+.. ++.+.+++.+.+.|-.++++..
T Consensus 32 ~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 79 (84)
T 1q8l_A 32 GKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQ 79 (84)
T ss_dssp HTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCC
T ss_pred HcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecCC
Confidence 45899999999999999999863 6889999999999998887763
No 24
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=95.45 E-value=0.025 Score=41.75 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=40.7
Q ss_pred cccccCeeEEEEeCCCCeEEEee---ccChHHHHHHHHHc---CCceeeeccc
Q 038384 135 PSKIQGVYSVVIDAEKGTVNISG---KVNPNTMLRILDKN---GRHAEFSCLE 181 (283)
Q Consensus 135 p~KI~GV~sv~ID~~~~kVtVtG---~Vdp~~vlkkl~k~---GK~Ae~w~~~ 181 (283)
..+++||.+++||...++++|+. .++.+.|++.+.+. |-+|++|...
T Consensus 25 L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~~ 77 (90)
T 2g9o_A 25 LSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEV 77 (90)
T ss_dssp HTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCCC
T ss_pred HHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCCC
Confidence 35699999999999999999974 57889999999999 5889988754
No 25
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=95.42 E-value=0.019 Score=45.20 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=41.0
Q ss_pred ccccCeeEEEEeCCCCeEEEe---eccChHHHHHHHHHcCCceeeeccc
Q 038384 136 SKIQGVYSVVIDAEKGTVNIS---GKVNPNTMLRILDKNGRHAEFSCLE 181 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVt---G~Vdp~~vlkkl~k~GK~Ae~w~~~ 181 (283)
.+++||.+++||...++++|+ +.++++.|++.+.+.|-+++++...
T Consensus 97 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 145 (151)
T 1p6t_A 97 NKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQ 145 (151)
T ss_dssp TTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCSS
T ss_pred hcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcCcc
Confidence 568999999999999999998 5689999999999999999887644
No 26
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=95.39 E-value=0.035 Score=38.19 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=38.8
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceeeecc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEFSCL 180 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~w~~ 180 (283)
.+++||.++++|...++++|+.. ++.+.+++.+.+.|-.+++...
T Consensus 25 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 72 (75)
T 3cjk_B 25 GKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHNI 72 (75)
T ss_dssp HTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEEE
T ss_pred hcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeecC
Confidence 45899999999999999999753 6789999999999988877653
No 27
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=95.29 E-value=0.031 Score=36.71 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=34.3
Q ss_pred ccccCeeEEEEeCCCCeEEEee---ccChHHHHHHHHHcCCce
Q 038384 136 SKIQGVYSVVIDAEKGTVNISG---KVNPNTMLRILDKNGRHA 175 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG---~Vdp~~vlkkl~k~GK~A 175 (283)
.+++||.++.+|...++++|+. .++.+.+.+.+.+.|-.+
T Consensus 25 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 67 (69)
T 2qif_A 25 GELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp HTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred hcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 4589999999999999999974 478889999999998654
No 28
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=95.00 E-value=0.039 Score=37.18 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=36.0
Q ss_pred ccccCeeEEEEeCCCCeEEEeec--cChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK--VNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~--Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.++++|...++++|+.. ++.+.+++.+.+.|-.+++
T Consensus 23 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~ 66 (69)
T 2kt2_A 23 EKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATL 66 (69)
T ss_dssp HHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEEC
T ss_pred HcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEe
Confidence 45899999999999999999743 6789999999999987654
No 29
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=94.94 E-value=0.05 Score=35.95 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=34.0
Q ss_pred ccccCeeEEEEeCCCCeEEEeec--cChHHHHHHHHHcCCce
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK--VNPNTMLRILDKNGRHA 175 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~--Vdp~~vlkkl~k~GK~A 175 (283)
++++||.++++|...++++|... ++.+.+.+.+.+.|-.+
T Consensus 24 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~ 65 (66)
T 1yg0_A 24 GEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV 65 (66)
T ss_dssp TTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred hcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 56899999999999999999854 57888999999988643
No 30
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=94.79 E-value=0.033 Score=43.44 Aligned_cols=43 Identities=14% Similarity=0.385 Sum_probs=38.0
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceeee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEFS 178 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~w 178 (283)
++++||.+++||...++++|+.+ ++++.|++.+.+.|-+++++
T Consensus 103 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 148 (149)
T 2ew9_A 103 TRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLA 148 (149)
T ss_dssp HHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEECC
T ss_pred hcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEec
Confidence 45899999999999999999754 68899999999999888764
No 31
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=94.57 E-value=0.044 Score=37.32 Aligned_cols=42 Identities=12% Similarity=0.323 Sum_probs=35.3
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.++++|...++++|+.. ++.+.+++.+.+.|-.+++
T Consensus 27 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 71 (75)
T 1yjr_A 27 TKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSL 71 (75)
T ss_dssp TTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEE
T ss_pred HcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcee
Confidence 56899999999999999999865 5678888889999876653
No 32
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=94.55 E-value=0.073 Score=35.30 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=34.7
Q ss_pred cccccCeeEEEEeCCCCeEEEee---ccChHHHHHHHHHcCCce
Q 038384 135 PSKIQGVYSVVIDAEKGTVNISG---KVNPNTMLRILDKNGRHA 175 (283)
Q Consensus 135 p~KI~GV~sv~ID~~~~kVtVtG---~Vdp~~vlkkl~k~GK~A 175 (283)
..+++||.++++|...++++|+. .++.+.+.+.+.+.|-.+
T Consensus 25 l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 68 (71)
T 2ldi_A 25 LERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTL 68 (71)
T ss_dssp GGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEE
T ss_pred HhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 35689999999999999999974 467888999999998654
No 33
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=94.27 E-value=0.049 Score=37.83 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=38.5
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceeeec
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEFSC 179 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~w~ 179 (283)
.+++||.++++|...++++|+.. ++.+.+.+.+.+.|-.++++.
T Consensus 26 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 72 (77)
T 1y3j_A 26 RREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIE 72 (77)
T ss_dssp TTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEES
T ss_pred hcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECC
Confidence 56899999999999999999753 678899999999998888765
No 34
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=94.16 E-value=0.039 Score=37.54 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=34.0
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCcee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAE 176 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae 176 (283)
+++ ||.++++|...++++|++..+ +.+.+.+.+.|-.++
T Consensus 24 ~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~ 62 (67)
T 2kyz_A 24 EEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVE 62 (67)
T ss_dssp HHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCC
T ss_pred HHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCcee
Confidence 458 999999999999999998877 889999999997654
No 35
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=93.83 E-value=0.062 Score=37.36 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=36.1
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.++++|...++++|+.. ++.+.+++.+.+.|-.+++
T Consensus 31 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~ 75 (79)
T 1kvi_A 31 GKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVI 75 (79)
T ss_dssp HHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEE
T ss_pred hcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEe
Confidence 45899999999999999999753 6788999999999987765
No 36
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=93.26 E-value=0.084 Score=36.44 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=38.8
Q ss_pred ccccCeeEEEEeCCCCeEEEee---ccChHHHHHHHHHcCCceeeecc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISG---KVNPNTMLRILDKNGRHAEFSCL 180 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG---~Vdp~~vlkkl~k~GK~Ae~w~~ 180 (283)
.+++||.++++|...++++|.- .++.+.+.+.+.+.|-.++++..
T Consensus 26 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~ 73 (80)
T 1jww_A 26 NKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 73 (80)
T ss_dssp HTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECCS
T ss_pred hcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecCc
Confidence 4589999999999999999963 57888999999999988888764
No 37
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=93.23 E-value=0.18 Score=34.49 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=33.6
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccC-hHHHHHHHHHcCCcee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVN-PNTMLRILDKNGRHAE 176 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vd-p~~vlkkl~k~GK~Ae 176 (283)
.+++||.++.||...++++|+..-. .+.+++.+.+.|-.+.
T Consensus 26 ~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~ 67 (73)
T 1mwy_A 26 RQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLR 67 (73)
T ss_dssp HTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEE
T ss_pred hcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCccc
Confidence 5689999999999999999986532 5677888889997654
No 38
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=93.00 E-value=0.15 Score=42.68 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=39.3
Q ss_pred cccccCeeEEEEeCCCCeEEEee---ccChHHHHHHHHHcCCceeeeccc
Q 038384 135 PSKIQGVYSVVIDAEKGTVNISG---KVNPNTMLRILDKNGRHAEFSCLE 181 (283)
Q Consensus 135 p~KI~GV~sv~ID~~~~kVtVtG---~Vdp~~vlkkl~k~GK~Ae~w~~~ 181 (283)
..+++||.+++||...++++|+. .++.+.|++.|.+.|-.++++...
T Consensus 144 l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~ 193 (202)
T 2rop_A 144 ISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSES 193 (202)
T ss_dssp GGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC---
T ss_pred HHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCCC
Confidence 36799999999999999999974 478899999999999999887643
No 39
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=92.25 E-value=0.25 Score=36.16 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=38.7
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceeeecc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEFSCL 180 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~w~~ 180 (283)
.+++||.++.+|...++++|+.. ++.+.+++.+.+.|-.++++..
T Consensus 39 ~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 86 (95)
T 2kkh_A 39 KSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVN 86 (95)
T ss_dssp HHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCC
T ss_pred hcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecC
Confidence 45899999999999999999864 5788899999999988887764
No 40
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=92.13 E-value=0.26 Score=37.79 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=36.1
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHcCCceee
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+++||.+++||...++++|+.. ++.+.|++.|.+.|-.+..
T Consensus 31 ~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~~~ 75 (111)
T 2ofg_X 31 ERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAE 75 (111)
T ss_dssp TTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCEEC
T ss_pred HcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCeeee
Confidence 56899999999999999999854 6788999999999976653
No 41
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=91.27 E-value=0.21 Score=34.06 Aligned_cols=41 Identities=15% Similarity=0.417 Sum_probs=31.5
Q ss_pred ccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCC--ceeeecc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGR--HAEFSCL 180 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK--~Ae~w~~ 180 (283)
.+++||.+++||...++++|.+..+ .+.+.++|- ..+.|.+
T Consensus 26 ~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~~~~~~ 68 (71)
T 2aj0_A 26 KEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHLKIIPE 68 (71)
T ss_dssp HHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTCEEECC
T ss_pred HcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCcccccCCc
Confidence 4589999999999999999998875 445667664 3455654
No 42
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=83.26 E-value=1.4 Score=33.98 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=37.1
Q ss_pred ccccCeeEEEEeCCCCeEEEee---ccChHHHHHHHHHcCCceeeec
Q 038384 136 SKIQGVYSVVIDAEKGTVNISG---KVNPNTMLRILDKNGRHAEFSC 179 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG---~Vdp~~vlkkl~k~GK~Ae~w~ 179 (283)
++++||.++.+|...++++|+. .++++.+.+.+.+.|-.+++..
T Consensus 27 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 73 (149)
T 2ew9_A 27 QKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVME 73 (149)
T ss_dssp HTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred hcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEeec
Confidence 4589999999999999999974 4678899999999998877643
No 43
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=72.99 E-value=4.2 Score=31.41 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=32.9
Q ss_pred ccccCeeEEEEeCCCCeEEEe---eccChHHHHHHHHHcCCce
Q 038384 136 SKIQGVYSVVIDAEKGTVNIS---GKVNPNTMLRILDKNGRHA 175 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVt---G~Vdp~~vlkkl~k~GK~A 175 (283)
.+++||.++.+|...++++|+ +.++.+.+.+.+.+.|-.+
T Consensus 29 ~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 71 (151)
T 1p6t_A 29 KRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV 71 (151)
T ss_dssp TTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred hcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence 458999999999999999986 3467888888888888543
No 44
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=66.14 E-value=7.2 Score=32.24 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=31.2
Q ss_pred ccccCeeEEEEeCCCCeEEEeec---cChHHHHHHHHHc
Q 038384 136 SKIQGVYSVVIDAEKGTVNISGK---VNPNTMLRILDKN 171 (283)
Q Consensus 136 ~KI~GV~sv~ID~~~~kVtVtG~---Vdp~~vlkkl~k~ 171 (283)
.+++||.++.||...++++|... ++++.+.+.+.+.
T Consensus 43 ~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 43 GQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp TSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred hcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999754 6788888888877
No 45
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=64.75 E-value=5.7 Score=40.36 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=38.5
Q ss_pred cccccCeeEEEEeCCCCeEEEe---eccChHHHHHHHHHcCCceeee
Q 038384 135 PSKIQGVYSVVIDAEKGTVNIS---GKVNPNTMLRILDKNGRHAEFS 178 (283)
Q Consensus 135 p~KI~GV~sv~ID~~~~kVtVt---G~Vdp~~vlkkl~k~GK~Ae~w 178 (283)
.++++||.+++||...++++|+ +.++++++++.+.+.|-.++..
T Consensus 24 L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~~ 70 (723)
T 3j09_A 24 VGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVDE 70 (723)
T ss_dssp HHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESSC
T ss_pred HhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCccccc
Confidence 3579999999999999999996 4589999999999999877644
No 46
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=45.91 E-value=48 Score=24.53 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=24.3
Q ss_pred ceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCcc
Q 038384 21 RCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPY 59 (283)
Q Consensus 21 ~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~ 59 (283)
...||+|||- ..+-+..-++|.+. =-|..|.++++.
T Consensus 35 ~v~IIHGkG~-GvLr~~V~~~L~~~--~~V~~f~~a~~~ 70 (83)
T 2zqe_A 35 TLRLLHGKGT-GALRQAIREALRRD--KRVESFADAPPG 70 (83)
T ss_dssp EEEEECCSTT-SHHHHHHHHHHHHC--TTEEEEEECCTT
T ss_pred EEEEEECCCc-hHHHHHHHHHHhcC--CceeEEEEcCcc
Confidence 3579999997 45555556666654 257778887763
No 47
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=34.77 E-value=59 Score=23.44 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=23.9
Q ss_pred eEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCcc
Q 038384 22 CIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPY 59 (283)
Q Consensus 22 cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~ 59 (283)
-++|+--..|+.....++++|.+..++||++++..+-.
T Consensus 48 dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~ 85 (120)
T 3f6p_A 48 DLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSE 85 (120)
T ss_dssp SEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCCh
Confidence 35666666666666677776665556676666665443
No 48
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=33.90 E-value=29 Score=28.36 Aligned_cols=31 Identities=6% Similarity=0.169 Sum_probs=27.9
Q ss_pred CeEEEeeccChHHHHHHHHHc-CCceeeeccc
Q 038384 151 GTVNISGKVNPNTMLRILDKN-GRHAEFSCLE 181 (283)
Q Consensus 151 ~kVtVtG~Vdp~~vlkkl~k~-GK~Ae~w~~~ 181 (283)
.=|.|||.-|=..++++|+.. ||+++++..+
T Consensus 111 ~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~ 142 (165)
T 2qip_A 111 RVILVSGDGDFSLLVERIQQRYNKKVTVYGVP 142 (165)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHCCEEEEEECG
T ss_pred EEEEEECChhHHHHHHHHHHHcCcEEEEEeCC
Confidence 348999999999999999996 9999999865
No 49
>1kaf_A Transcription regulatory protein MOTA; escherichia coli, X-RAY crystallography, protein-DNA interactions, structural genomics; 1.60A {Enterobacteria phage T4} SCOP: d.199.1.1
Probab=32.31 E-value=58 Score=26.08 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=39.6
Q ss_pred ccccccccccccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCceee
Q 038384 126 FSFLSEKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHAEF 177 (283)
Q Consensus 126 ~~fl~~~YLp~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~Ae~ 177 (283)
.+|+. -+..+..|+-.++|- ..|.+-|.|+==.++.++++...|-....
T Consensus 33 SN~~i--~f~KRt~GiRqfEi~-n~G~fRI~gYk~se~~~~~f~slGm~~K~ 81 (108)
T 1kaf_A 33 SNYLA--ILEKRTNGIRNFEIN-NNGNMRIFGYKMMEHHIQKFTDIGMSCKI 81 (108)
T ss_dssp TEEEE--EEEEEETTEEEEEEC-TTSEEEEEEESCCHHHHHHHHTTTCEEEE
T ss_pred cceEE--eeecccCceeEEEEe-cCCcEEEEEecCCHHHHHHHHhcCceEEE
Confidence 44543 356889999999995 57899999999999999999999965543
No 50
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=30.79 E-value=1.3e+02 Score=28.68 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCccchhHHHHhhhccccccccccccCCCCceeeccCcccccccCCCCcccccCChhhh
Q 038384 35 TRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYRFGSMQMAYDAKFLRIPEMHWLGAFPSDFEKYGLPKNCRLKLTVEGV 114 (283)
Q Consensus 35 TR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk~GS~~~a~es~~l~~P~l~WLGv~~~Di~~~~l~~~~llpLt~r~~ 114 (283)
...||+.|...+. +-.++++.|+-=-++...| .-+.+|.+-. + ..|...+.+-|..++
T Consensus 8 ~~~f~~~L~~~~~-~~~v~~~~~~~y~~~~~~~---------------~~n~rw~~~~--~----~~P~~vv~p~~~~~v 65 (500)
T 3tsh_A 8 KEDFLGCLVKEIP-PRLLYAKSSPAYPSVLGQT---------------IRNSRWSSPD--N----VKPLYIITPTQVSHI 65 (500)
T ss_dssp -CHHHHHHHHHSC-GGGEEETTSTTHHHHHHTT---------------CCCTTTTSTT--S----CCCSEEECCSSHHHH
T ss_pred HHHHHHHHHhhCC-CCEEECCCCCccHHHHHhh---------------hccccccCCC--C----CCceEEEEcCCHHHH
Confidence 4578999987642 2234567776311222222 1245565421 1 123444556666666
Q ss_pred HHHHHHHhhcCccccc-----------------cccccccccCeeEEEEeCCCCeEEEeeccChHHHHHHHHHcCCce
Q 038384 115 KFEIEAFCACSFSFLS-----------------EKYIPSKIQGVYSVVIDAEKGTVNISGKVNPNTMLRILDKNGRHA 175 (283)
Q Consensus 115 KaEIEAL~~~~~~fl~-----------------~~YLp~KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~k~GK~A 175 (283)
.+-++....++..+.. +.-|.--|....+|+||.+.+.|+|-+=+-=.+|.+.|.+.|+.-
T Consensus 66 ~~~v~~a~~~~~~~~~r~gGh~~~g~s~~~~~~~~~~~idl~~~~~v~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~ 143 (500)
T 3tsh_A 66 QSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTL 143 (500)
T ss_dssp HHHHHHHHHTTCEEEEESSCCCTTCTTTCCSSSCCEEEEECTTCCCEEEETTTTEEEEETTSBHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHCCCcEEEEcCCcCCCCCcCCCCCcCCeEEEECcCCCCEEECCCCCEEEEccCcCHHHHHHHHHHhCCCc
Confidence 6555544333322211 112222234445568999999999999999999999999999753
No 51
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=30.49 E-value=80 Score=24.17 Aligned_cols=31 Identities=23% Similarity=0.466 Sum_probs=23.1
Q ss_pred ccCeeEEEEeCCCCeEEEeeccChHHHHHHHH
Q 038384 138 IQGVYSVVIDAEKGTVNISGKVNPNTMLRILD 169 (283)
Q Consensus 138 I~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~ 169 (283)
.-||.+++||-+.++|+|.| .|.+.+-+...
T Consensus 43 ~tGv~~IdI~eddG~V~I~g-~~~ea~~~A~~ 73 (91)
T 2cpq_A 43 VPGVTAIELDEDTGTFRIYG-ESADAVKKARG 73 (91)
T ss_dssp STTEEEEEEETTTTEEEEEE-SSHHHHHHHHH
T ss_pred HhCCeEEEEEcCCCEEEEEE-CCHHHHHHHHH
Confidence 46887799997779999999 56666644433
No 52
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=29.27 E-value=1e+02 Score=24.97 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=22.9
Q ss_pred eEEEecCccCC-----hHHHHHHHHHHHhcCCcEEEEecCCcc
Q 038384 22 CIVITGRGYPD-----ISTRRFLRLLIEKLRLPTFCLVDCDPY 59 (283)
Q Consensus 22 cILITGKGyPD-----~aTR~fL~~L~~~~~lpi~~L~D~DP~ 59 (283)
+.||||||--. .+=+..-.+|.+. =-|.+|.++.+.
T Consensus 79 V~IIHGKG~gs~~~~~vLk~~V~~wL~~~--~~V~~f~~a~~~ 119 (137)
T 3qd7_X 79 VLIIHGKGRDDKSHANIVRSYVARWLTEF--DDVQAYCTALPH 119 (137)
T ss_dssp EEEECCCCSSTTSHHHHHHHHHHHHHHTS--TTEEEEEECCGG
T ss_pred EEEEECCCCCCCCchHHHHHHHHHHHhcC--CceeEEeecCcc
Confidence 46999999753 4444444555543 257778877764
No 53
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=28.22 E-value=62 Score=25.96 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=29.3
Q ss_pred eEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 22 CIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 22 cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
+=+|+..|+=+..+...|+.+.+ .--|++|+|+|--|-.|....+
T Consensus 27 ~~iI~t~Gsi~~~~l~~I~~~~~--~r~VIi~TD~D~~GekIRk~i~ 71 (119)
T 2fcj_A 27 VVIVCTNGTISDARLEELADELE--GYDVYLLADADEAGEKLRRQFR 71 (119)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTT--TSEEEEECCSSHHHHHHHHHHH
T ss_pred CCEEEeCCccCHHHHHHHHHHhc--CCCEEEEECCCccHHHHHHHHH
Confidence 33566667633333334444443 3479999999999999988654
No 54
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=28.20 E-value=1.1e+02 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=36.8
Q ss_pred ceEEEecCccCChHHHHHHHHHHHh-----cCCcEEEEecCCccchhHHHHhhhc
Q 038384 21 RCIVITGRGYPDISTRRFLRLLIEK-----LRLPTFCLVDCDPYGFDILTTYRFG 70 (283)
Q Consensus 21 ~cILITGKGyPD~aTR~fL~~L~~~-----~~lpi~~L~D~DP~Gi~I~~tYk~G 70 (283)
.-|||+--..|+.....|+++|.+. .++||++++..+..--.+...++.|
T Consensus 120 ~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~G 174 (206)
T 3mm4_A 120 FDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAG 174 (206)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCC
Confidence 3477788888998888999988764 5789999988764433555566665
No 55
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=27.94 E-value=91 Score=23.03 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=31.9
Q ss_pred ceEEEecCccCChHHHHHHHHHHHh-cCCcEEEEecCCccchhHHHHhhhc
Q 038384 21 RCIVITGRGYPDISTRRFLRLLIEK-LRLPTFCLVDCDPYGFDILTTYRFG 70 (283)
Q Consensus 21 ~cILITGKGyPD~aTR~fL~~L~~~-~~lpi~~L~D~DP~Gi~I~~tYk~G 70 (283)
.-++|+.-..|+.....+++.|.+. .++||+++++.+-.. .+...++.|
T Consensus 68 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~-~~~~~~~~g 117 (146)
T 4dad_A 68 FDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQ-TLLDAMRAG 117 (146)
T ss_dssp CSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHH-HHHHHHTTT
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHH-HHHHHHHhC
Confidence 3467777777888888888888765 467888887755332 233334444
No 56
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=27.04 E-value=38 Score=27.11 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=24.1
Q ss_pred eeEEEEeCCCCeEEEeeccChH----HHHHHHHH-cCCc
Q 038384 141 VYSVVIDAEKGTVNISGKVNPN----TMLRILDK-NGRH 174 (283)
Q Consensus 141 V~sv~ID~~~~kVtVtG~Vdp~----~vlkkl~k-~GK~ 174 (283)
.+-++|..+.+.||++|.|+-. .+++.+++ .|=+
T Consensus 7 p~~i~V~v~~G~VTLsG~Vp~~~~k~aa~~a~~~v~Gv~ 45 (132)
T 2kgs_A 7 LSLLSISRSGNTVTLIGDFPDEAAKAALMTALNGLLAPG 45 (132)
T ss_dssp EEEEEEEECSSEEEEEEEESCHHHHHHHHHHHHTTCCTT
T ss_pred ceeEEEEEECCEEEEEEECCCHHHHHHHHHHHHHhcCCC
Confidence 3567888889999999999743 34555554 4543
No 57
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=27.03 E-value=34 Score=28.62 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=28.5
Q ss_pred CceEEEecCccCChHHH-----HHHHHHHH--hcCCcEEEEecCCccchhHHHHhhhc
Q 038384 20 NRCIVITGRGYPDISTR-----RFLRLLIE--KLRLPTFCLVDCDPYGFDILTTYRFG 70 (283)
Q Consensus 20 ~~cILITGKGyPD~aTR-----~fL~~L~~--~~~lpi~~L~D~DP~Gi~I~~tYk~G 70 (283)
...|||+| |+|+.... .++..|.+ +.++||+|++ .|+.++...--|
T Consensus 58 ~d~iil~G-G~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC----~G~QlL~~~~gg 110 (208)
T 2iss_D 58 VDGLILPG-GESTTMIRILKEMDMDEKLVERINNGLPVFATC----AGVILLAKRIKN 110 (208)
T ss_dssp CSEEEECS-SCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEET----HHHHHHEEEEC-
T ss_pred CCEEEECC-CcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEEC----HHHHHHHHHcCC
Confidence 46799988 88865432 12233332 2479999997 677776665443
No 58
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.95 E-value=1.1e+02 Score=21.03 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=19.0
Q ss_pred EEEecCccCChHHHHHHHHHHHh---cCCcEEEEecCCc
Q 038384 23 IVITGRGYPDISTRRFLRLLIEK---LRLPTFCLVDCDP 58 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~---~~lpi~~L~D~DP 58 (283)
++|..-..|+.....+++.|.+. .++|++++++.+-
T Consensus 48 lii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 86 (119)
T 2j48_A 48 VILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPP 86 (119)
T ss_dssp EEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCC
T ss_pred EEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCC
Confidence 34444445555555666666544 3456666655443
No 59
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=26.68 E-value=34 Score=28.47 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.5
Q ss_pred EEEecCccCChHHHHHHHHHHHhcCCc
Q 038384 23 IVITGRGYPDISTRRFLRLLIEKLRLP 49 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~~~lp 49 (283)
||||.-.-|+-.|++|.+.|+..++++
T Consensus 2 ilITTSr~Ps~~l~~fakeLa~~ln~~ 28 (156)
T 1w94_A 2 MLLTTSRKPSQRTRSFSQRLSRIMGWR 28 (156)
T ss_dssp CEEEECSSCCHHHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCE
Confidence 689999999999999999999876543
No 60
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=26.33 E-value=67 Score=23.24 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=12.7
Q ss_pred eEEEecCccC-----ChHHHHHHHHHHHh
Q 038384 22 CIVITGRGYP-----DISTRRFLRLLIEK 45 (283)
Q Consensus 22 cILITGKGyP-----D~aTR~fL~~L~~~ 45 (283)
..||||||-- ...-+...++|.+.
T Consensus 37 v~II~GkG~hS~~g~~~Lk~~V~~~L~~~ 65 (82)
T 3fau_A 37 LSVITGRGNHSQGGVARIKPAVIKYLISH 65 (82)
T ss_dssp EEEECCC---------CHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCCcchHHHHHHHHHHhC
Confidence 4799999962 23444555566554
No 61
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=26.01 E-value=95 Score=22.90 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=2.8
Q ss_pred EEEecC
Q 038384 51 FCLVDC 56 (283)
Q Consensus 51 ~~L~D~ 56 (283)
++|+|.
T Consensus 53 lvi~D~ 58 (140)
T 3h5i_A 53 LILMDI 58 (140)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 444553
No 62
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=25.64 E-value=34 Score=27.54 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCc-EEEEecCCccchhHHHHhh
Q 038384 37 RFLRLLIEKLRLP-TFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 37 ~fL~~L~~~~~lp-i~~L~D~DP~Gi~I~~tYk 68 (283)
.+++.|++. -- |++|+|+|--|-.|.....
T Consensus 53 ~~i~~l~~~--~~~VIIltD~D~aGe~ir~~i~ 83 (118)
T 1t6t_1 53 DVVDMLEGK--WEKVILLFDLDTHGERINQKMK 83 (118)
T ss_dssp HHHHHHTTT--CSEEEECCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCEEEEEECCChhHHHHHHHHH
Confidence 366666542 45 9999999999999987764
No 63
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=25.57 E-value=32 Score=27.22 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=27.5
Q ss_pred cccCeeEEEE-----e--CCCCeEEEeec-cChHHHHHHHHHcCC
Q 038384 137 KIQGVYSVVI-----D--AEKGTVNISGK-VNPNTMLRILDKNGR 173 (283)
Q Consensus 137 KI~GV~sv~I-----D--~~~~kVtVtG~-Vdp~~vlkkl~k~GK 173 (283)
+++||+.|+| | .+.=||||.|+ +|-+.|.+.+.+.|-
T Consensus 30 ~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~Gg 74 (100)
T 3bpd_A 30 ELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGG 74 (100)
T ss_dssp TSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTC
T ss_pred hCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 4666665543 3 33446899998 999999999999885
No 64
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=25.37 E-value=70 Score=27.87 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=28.2
Q ss_pred CCceEEEecCccCChHH----------------HHHHHHHHHhcCCcEEEEecCCccchh
Q 038384 19 RNRCIVITGRGYPDIST----------------RRFLRLLIEKLRLPTFCLVDCDPYGFD 62 (283)
Q Consensus 19 ~~~cILITGKGyPD~aT----------------R~fL~~L~~~~~lpi~~L~D~DP~Gi~ 62 (283)
..++|||||.| ..+.+ +.+++.|. .+..|+++.+++...|.-
T Consensus 50 ~vr~vVltg~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~-~~~kPvIAav~G~a~GgG 107 (255)
T 3p5m_A 50 SVRAVLLTGAG-RAFCSGGDLTGGDTAGAADAANRVVRAIT-SLPKPVIAGVHGAAVGFG 107 (255)
T ss_dssp TCCEEEEEESS-SCSBCEECC---CHHHHHHHHHHHHHHHH-HCSSCEEEEECSEEETHH
T ss_pred CeEEEEEECCC-CCccCCCChhhhcchHHHHHHHHHHHHHH-hCCCCEEEEeCCeehhhH
Confidence 45789999988 42211 23344443 257899999999999753
No 65
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=25.28 E-value=1.2e+02 Score=21.27 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=14.9
Q ss_pred EEEecCccCChHHHHHHHHHHHhcCCcEEEEecC
Q 038384 23 IVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDC 56 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~ 56 (283)
++|..-..|+..--.+++.|.+...+|++++++.
T Consensus 48 lvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 48 IIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp EEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESC
T ss_pred EEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecC
Confidence 3344444444444444444443334444444443
No 66
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=25.28 E-value=41 Score=26.47 Aligned_cols=27 Identities=22% Similarity=0.446 Sum_probs=22.5
Q ss_pred eCCCCeEEEeec-cChHHHHHHHHHcCC
Q 038384 147 DAEKGTVNISGK-VNPNTMLRILDKNGR 173 (283)
Q Consensus 147 D~~~~kVtVtG~-Vdp~~vlkkl~k~GK 173 (283)
+.+.=||||-|+ +|-+.+.+.+.+.|-
T Consensus 47 eTe~lkitiEG~~id~d~I~~~IE~~Gg 74 (97)
T 2raq_A 47 ETENIKVTIQGNDLDFDEITRAIESYGG 74 (97)
T ss_dssp SCEEEEEEEECSSCCHHHHHHHHHHTTC
T ss_pred cccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 344456999998 999999999999885
No 67
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=25.20 E-value=21 Score=28.72 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=21.0
Q ss_pred EEEEeCCCCeEEEeeccChHHHHHHHHH
Q 038384 143 SVVIDAEKGTVNISGKVNPNTMLRILDK 170 (283)
Q Consensus 143 sv~ID~~~~kVtVtG~Vdp~~vlkkl~k 170 (283)
.++|+.+.++||++|.|+-..--+.+.+
T Consensus 78 ~i~V~V~~g~VtLsG~v~s~~~r~~a~~ 105 (132)
T 2kgs_A 78 DFGLKVERDTVTLTGTAPSSEHKDAVKR 105 (132)
T ss_dssp TCEEEEEETEEEEECEESSHHHHHHHHH
T ss_pred ceEEEEECCEEEEEEEECCHHHHHHHHH
Confidence 4566778999999999998765555443
No 68
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.62 E-value=1.6e+02 Score=21.35 Aligned_cols=36 Identities=11% Similarity=0.346 Sum_probs=20.0
Q ss_pred eEEEecCccCChHHHHHHHHHHHh---cCCcEEEEecCC
Q 038384 22 CIVITGRGYPDISTRRFLRLLIEK---LRLPTFCLVDCD 57 (283)
Q Consensus 22 cILITGKGyPD~aTR~fL~~L~~~---~~lpi~~L~D~D 57 (283)
-++|..-..|+.....+++.|.+. .++||+++++.+
T Consensus 64 dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 64 AVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp SEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCC
T ss_pred cEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCC
Confidence 355555555665555666666543 345666665543
No 69
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=24.46 E-value=61 Score=25.58 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=29.0
Q ss_pred cccCeeEEEEeCCCCeEEEeeccChHHHHHHHH
Q 038384 137 KIQGVYSVVIDAEKGTVNISGKVNPNTMLRILD 169 (283)
Q Consensus 137 KI~GV~sv~ID~~~~kVtVtG~Vdp~~vlkkl~ 169 (283)
.++||+-+++|.+..=+.+++.++|.+.+..|.
T Consensus 95 ~v~Gv~v~~~~~dGkI~~~~~~~~P~~~~~~~~ 127 (143)
T 3mso_A 95 ELKGIDMIRFDDDGRIVDFEVMVRPMSGLQALG 127 (143)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEESHHHHHHHH
T ss_pred EEEEEEEEEECCCCcEEEEEEEECcHHHHHHHH
Confidence 589999999997766688999999999999885
No 70
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Probab=24.36 E-value=1.7e+02 Score=28.07 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=33.2
Q ss_pred ceEEEecCccCChHHHHHHHHHHHhcCCcEEEEecC-----CccchhHHHHhh
Q 038384 21 RCIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDC-----DPYGFDILTTYR 68 (283)
Q Consensus 21 ~cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~-----DP~Gi~I~~tYk 68 (283)
.-+.|.|-| ++ -+.++++|+++.+..++++.|. ||.||++...-.
T Consensus 210 ~~vaVqG~G--nV-G~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~ 259 (415)
T 2tmg_A 210 ATVAVQGFG--NV-GQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIR 259 (415)
T ss_dssp CEEEEECCS--HH-HHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHH
T ss_pred CEEEEECCc--HH-HHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHH
Confidence 447788776 44 4677778876469999999998 799998854443
No 71
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=24.28 E-value=1.5e+02 Score=21.69 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=28.4
Q ss_pred ceEEEecCccCC--hHHHHHHHHHHHh-cCCcEEEEecCCcc
Q 038384 21 RCIVITGRGYPD--ISTRRFLRLLIEK-LRLPTFCLVDCDPY 59 (283)
Q Consensus 21 ~cILITGKGyPD--~aTR~fL~~L~~~-~~lpi~~L~D~DP~ 59 (283)
+-++|..-..|+ .....|+++|.+. .++||+++++.+-.
T Consensus 51 ~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 92 (136)
T 3kto_A 51 AIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDI 92 (136)
T ss_dssp EEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCH
T ss_pred CCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCH
Confidence 347777777788 7888888888765 46788888776543
No 72
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=24.08 E-value=1.6e+02 Score=22.46 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=33.0
Q ss_pred eEEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCccchh-HHHHhhhc
Q 038384 22 CIVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPYGFD-ILTTYRFG 70 (283)
Q Consensus 22 cILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~Gi~-I~~tYk~G 70 (283)
-|+|..-..|+.....|++.|.+...++++.++..+-.+.. +...++.|
T Consensus 73 dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~~~~~~~~~~~~~~~~g 122 (164)
T 3t8y_A 73 DVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNG 122 (164)
T ss_dssp SEEEECSSCSSSCHHHHHHHHHHHSCCEEEEEESSCCTTCHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEecCCccchHHHHHHHHcC
Confidence 36777777788888888888877656788888776655433 33445554
No 73
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=23.71 E-value=43 Score=26.33 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=27.4
Q ss_pred cccCeeEEEE-------eCCCCeEEEeec-cChHHHHHHHHHcCC
Q 038384 137 KIQGVYSVVI-------DAEKGTVNISGK-VNPNTMLRILDKNGR 173 (283)
Q Consensus 137 KI~GV~sv~I-------D~~~~kVtVtG~-Vdp~~vlkkl~k~GK 173 (283)
+++||+.|+| +.+.=||||.|+ +|-+.+.+.+.+.|-
T Consensus 29 ~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg 73 (96)
T 2x3d_A 29 KLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGC 73 (96)
T ss_dssp TSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTC
T ss_pred hCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC
Confidence 4566655543 334446999998 999999999999885
No 74
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.13 E-value=1.1e+02 Score=22.48 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=13.4
Q ss_pred EEEecCccCChHHHHHHHHHHHh-cCCcEEEEec
Q 038384 23 IVITGRGYPDISTRRFLRLLIEK-LRLPTFCLVD 55 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~-~~lpi~~L~D 55 (283)
++|..-..|+.....|++.|.+. .++||+++++
T Consensus 52 lvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 85 (143)
T 3jte_A 52 VVITDMKMPKLSGMDILREIKKITPHMAVIILTG 85 (143)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEEC
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEEC
Confidence 33333334444444444444433 2344444443
No 75
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=23.12 E-value=1.1e+02 Score=22.81 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=17.6
Q ss_pred EEEecCccCChHHHHHHHHHHHh-cCCcEEEEecCC
Q 038384 23 IVITGRGYPDISTRRFLRLLIEK-LRLPTFCLVDCD 57 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~-~~lpi~~L~D~D 57 (283)
|||..-..|+.....|++.|.+. .++||+++++.+
T Consensus 69 lii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 69 IAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp EEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 44444455555555555555543 345555555443
No 76
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=23.02 E-value=58 Score=26.77 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=28.5
Q ss_pred CCceEEEecCccCChHH--------HHHHHHHHHhcCCcEEEEecCCccchhHHHHhh
Q 038384 19 RNRCIVITGRGYPDIST--------RRFLRLLIEKLRLPTFCLVDCDPYGFDILTTYR 68 (283)
Q Consensus 19 ~~~cILITGKGyPD~aT--------R~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tYk 68 (283)
....|||+|-|.++-.. +.+|+...+ .++||+|++ .|+.++...-
T Consensus 42 ~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~-~~~PilGIC----~G~Qll~~~~ 94 (201)
T 1gpw_B 42 LYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVE-DERYVVGVC----LGMQLLFEES 94 (201)
T ss_dssp CCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHH-TTCEEEEET----HHHHTTSSEE
T ss_pred CCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHH-cCCeEEEEC----hhHHHHHHhh
Confidence 34679999977765331 233333322 479999997 6877776643
No 77
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.81 E-value=1.1e+02 Score=21.97 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEecCccCChHHHHHHHHHHHh---cCCcEEEEecCC
Q 038384 23 IVITGRGYPDISTRRFLRLLIEK---LRLPTFCLVDCD 57 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~---~~lpi~~L~D~D 57 (283)
++|..-..|+.....|++.|.+. .++||+++++.+
T Consensus 58 lvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 58 LILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp EEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred EEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCC
Confidence 55555555665556666666553 245666666544
No 78
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=22.54 E-value=98 Score=23.47 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=24.7
Q ss_pred EEEecCccCChHHHHHHHHHHHhcCCcEEEEecCCcc
Q 038384 23 IVITGRGYPDISTRRFLRLLIEKLRLPTFCLVDCDPY 59 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D~DP~ 59 (283)
++|=|-| -..+.+++.|.+..+..+.||+|-|+.
T Consensus 7 vlIiGaG---~~g~~l~~~l~~~~g~~vvg~~d~~~~ 40 (141)
T 3nkl_A 7 VLIYGAG---SAGLQLANMLRQGKEFHPIAFIDDDRK 40 (141)
T ss_dssp EEEECCS---HHHHHHHHHHHHSSSEEEEEEECSCGG
T ss_pred EEEECCC---HHHHHHHHHHHhCCCcEEEEEEECCcc
Confidence 4444544 356788888877667889999998874
No 79
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=22.40 E-value=1.4e+02 Score=21.27 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=23.8
Q ss_pred ceEEEecCccCChHHHHHHHHHHHh-cCCcEEEEecCCc
Q 038384 21 RCIVITGRGYPDISTRRFLRLLIEK-LRLPTFCLVDCDP 58 (283)
Q Consensus 21 ~cILITGKGyPD~aTR~fL~~L~~~-~~lpi~~L~D~DP 58 (283)
+-++|..-..|+...-.+++.|.+. .++||+.+.+.+-
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDS 85 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccc
Confidence 4466666666776667777777654 3566666665543
No 80
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=22.37 E-value=74 Score=28.80 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=25.3
Q ss_pred CceEEEecCccCChH--HHHHHHHHHHhcCCcEEEEecCCccchh
Q 038384 20 NRCIVITGRGYPDIS--TRRFLRLLIEKLRLPTFCLVDCDPYGFD 62 (283)
Q Consensus 20 ~~cILITGKGyPD~a--TR~fL~~L~~~~~lpi~~L~D~DP~Gi~ 62 (283)
.+.|-|+|||==.=. |-.+-..|++. +.. ++++|+||.|=.
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~-Gkk-VllID~Dpq~~s 90 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKR-VLQIGCDPKHDS 90 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT-TCC-EEEEEESSSCCT
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHC-CCe-EEEEecCCCCcc
Confidence 457999999943322 33344445443 555 557899997743
No 81
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=21.86 E-value=1.4e+02 Score=21.81 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=30.3
Q ss_pred ceEEEecCccC-ChHHHHHHHHHHH--h-cCCcEEEEecCCccchhHHHHhhhc
Q 038384 21 RCIVITGRGYP-DISTRRFLRLLIE--K-LRLPTFCLVDCDPYGFDILTTYRFG 70 (283)
Q Consensus 21 ~cILITGKGyP-D~aTR~fL~~L~~--~-~~lpi~~L~D~DP~Gi~I~~tYk~G 70 (283)
+-|+|+--..| +...-.|++.|.+ . .++||+.+++.+-.. .+...++.|
T Consensus 51 ~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~-~~~~~~~~g 103 (140)
T 3lua_A 51 ITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPG-YRHAALKFK 103 (140)
T ss_dssp CSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHH-HHHHHHHSC
T ss_pred CcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHH-HHHHHHHcC
Confidence 34677777777 7777777777776 2 467777777654332 233334443
No 82
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=21.79 E-value=1.1e+02 Score=21.98 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=14.8
Q ss_pred EEEecCccCChHHHHHHHHHHHh-cCCcEEEEec
Q 038384 23 IVITGRGYPDISTRRFLRLLIEK-LRLPTFCLVD 55 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~-~~lpi~~L~D 55 (283)
++|..-..|+.....|++.|.+. .++||+.+++
T Consensus 49 lii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 82 (134)
T 3f6c_A 49 IVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSA 82 (134)
T ss_dssp EEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEEC
T ss_pred EEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeC
Confidence 34444444444444455444433 2344444444
No 83
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=21.47 E-value=1.2e+02 Score=22.66 Aligned_cols=35 Identities=9% Similarity=0.128 Sum_probs=18.7
Q ss_pred EEEecCccCChHHHHHHHHHHHh-cCCcEEEEecCC
Q 038384 23 IVITGRGYPDISTRRFLRLLIEK-LRLPTFCLVDCD 57 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~-~~lpi~~L~D~D 57 (283)
|+|..-..|+.....+++.|.+. .++||+++++.+
T Consensus 64 lii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 64 VALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp EEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 44444455555555666655543 345555555544
No 84
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.37 E-value=1.4e+02 Score=21.30 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=13.6
Q ss_pred EEecCccCC-hHHHHHHHHHHHh-cCCcEEEEecC
Q 038384 24 VITGRGYPD-ISTRRFLRLLIEK-LRLPTFCLVDC 56 (283)
Q Consensus 24 LITGKGyPD-~aTR~fL~~L~~~-~~lpi~~L~D~ 56 (283)
+|..-..|+ .....+++.|.+. .++||+++++.
T Consensus 54 vi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 54 VVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp EEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESS
T ss_pred EEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 333334443 3444444444433 23444444443
No 85
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=21.23 E-value=95 Score=22.56 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=2.7
Q ss_pred EEEecC
Q 038384 51 FCLVDC 56 (283)
Q Consensus 51 ~~L~D~ 56 (283)
++|+|.
T Consensus 54 lvi~d~ 59 (137)
T 3hdg_A 54 VIITDI 59 (137)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 444453
No 86
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=21.08 E-value=41 Score=29.58 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=12.4
Q ss_pred cCCcEEEEec--CCccch
Q 038384 46 LRLPTFCLVD--CDPYGF 61 (283)
Q Consensus 46 ~~lpi~~L~D--~DP~Gi 61 (283)
++||+++|+| +||..+
T Consensus 137 l~IPvIalvDTn~~p~~V 154 (208)
T 1vi6_A 137 VGIPVVALCDSNNSSADV 154 (208)
T ss_dssp TTCCEEEEECTTCCCTTC
T ss_pred hCCCEEEEeCCCCCcccc
Confidence 6999999998 555543
No 87
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=20.97 E-value=1.3e+02 Score=22.19 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=6.0
Q ss_pred ccCChHHHHHHHHHH
Q 038384 29 GYPDISTRRFLRLLI 43 (283)
Q Consensus 29 GyPD~aTR~fL~~L~ 43 (283)
..|+.....|++.|.
T Consensus 61 ~l~~~~g~~~~~~l~ 75 (147)
T 2zay_A 61 NMPKISGMDLFNSLK 75 (147)
T ss_dssp CCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 333333334444443
No 88
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=20.93 E-value=1.3e+02 Score=21.30 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=12.1
Q ss_pred EecCccCChHHHHHHHHHHHhcCCcEEEEec
Q 038384 25 ITGRGYPDISTRRFLRLLIEKLRLPTFCLVD 55 (283)
Q Consensus 25 ITGKGyPD~aTR~fL~~L~~~~~lpi~~L~D 55 (283)
|..-..|+.....+++.|.+...+|++.+++
T Consensus 51 i~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~ 81 (122)
T 1zgz_A 51 LLDINLPDENGLMLTRALRERSTVGIILVTG 81 (122)
T ss_dssp EEESCCSSSCHHHHHHHHHTTCCCEEEEEES
T ss_pred EEeCCCCCCChHHHHHHHHhcCCCCEEEEEC
Confidence 3333344433334444443322334444433
No 89
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=20.90 E-value=1.5e+02 Score=21.21 Aligned_cols=34 Identities=6% Similarity=0.156 Sum_probs=16.9
Q ss_pred EEEecCccCChHHHHHHHHHHHh---cCCcEEEEecC
Q 038384 23 IVITGRGYPDISTRRFLRLLIEK---LRLPTFCLVDC 56 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~---~~lpi~~L~D~ 56 (283)
++|..-..|+.....|++.|.+. .++||+.+.+.
T Consensus 50 lvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 50 VLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp EEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 44444445555555555555543 24555555543
No 90
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.87 E-value=1.1e+02 Score=22.40 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=18.1
Q ss_pred EEEecCccCChHHHHHHHHHHH---hcCCcEEEEecC
Q 038384 23 IVITGRGYPDISTRRFLRLLIE---KLRLPTFCLVDC 56 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~---~~~lpi~~L~D~ 56 (283)
++|..-..|+.....|++.|.+ ..++||+++++.
T Consensus 54 lii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 54 LIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp EEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCC
Confidence 4555555555555555555554 134555555553
No 91
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.84 E-value=1.3e+02 Score=21.52 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=21.2
Q ss_pred EEEecCccCChHHHHHHHHHHHh---cCCcEEEEecCCccc
Q 038384 23 IVITGRGYPDISTRRFLRLLIEK---LRLPTFCLVDCDPYG 60 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~---~~lpi~~L~D~DP~G 60 (283)
++|..-..|+.....|++.|.+. .++||+.+++.+-..
T Consensus 50 lii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 90 (127)
T 3i42_A 50 AVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp EEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchh
Confidence 55555555666666666666553 345666666554443
No 92
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=20.81 E-value=53 Score=27.11 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=28.3
Q ss_pred CceEEEecCccCChH--------HHHHHHHHHHhcCCcEEEEecCCccchhHHHHh
Q 038384 20 NRCIVITGRGYPDIS--------TRRFLRLLIEKLRLPTFCLVDCDPYGFDILTTY 67 (283)
Q Consensus 20 ~~cILITGKGyPD~a--------TR~fL~~L~~~~~lpi~~L~D~DP~Gi~I~~tY 67 (283)
...|||+|-|.++-. .+.+|+...+ .++||+|++ .|+.++...
T Consensus 41 ~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~-~~~PilGIC----~G~Qll~~~ 91 (200)
T 1ka9_H 41 ADLLVLPGQGHFGQVMRAFQESGFVERVRRHLE-RGLPFLGIC----VGMQVLYEG 91 (200)
T ss_dssp CSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHH-TTCCEEECT----HHHHTTSSE
T ss_pred CCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHH-cCCeEEEEc----HHHHHHHHh
Confidence 467899998876432 3444544333 379999987 677766665
No 93
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=20.48 E-value=2.1e+02 Score=20.36 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=26.8
Q ss_pred eEEEecCccCChHHHHHHHHHHHh-cCCcEEEEecCCccchhHHHHhhhc
Q 038384 22 CIVITGRGYPDISTRRFLRLLIEK-LRLPTFCLVDCDPYGFDILTTYRFG 70 (283)
Q Consensus 22 cILITGKGyPD~aTR~fL~~L~~~-~~lpi~~L~D~DP~Gi~I~~tYk~G 70 (283)
-++|+--..|+...-.++++|.+. .++||+++++.+-.. .+...++.|
T Consensus 49 dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~~~g 97 (126)
T 1dbw_A 49 GVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVP-MAVEAMKAG 97 (126)
T ss_dssp EEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHH-HHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHH-HHHHHHHhC
Confidence 456666666666666666666654 356776666644321 333444444
No 94
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=20.19 E-value=1.5e+02 Score=22.41 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=19.0
Q ss_pred EEEecCccCChHHHHHHHHHHHh-cCCcEEEEecCC
Q 038384 23 IVITGRGYPDISTRRFLRLLIEK-LRLPTFCLVDCD 57 (283)
Q Consensus 23 ILITGKGyPD~aTR~fL~~L~~~-~~lpi~~L~D~D 57 (283)
|||..-..|+.....|++.|.+. .+++|+++++.+
T Consensus 86 liilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 86 IVTLXITMPKMDGITCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp EEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred EEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccC
Confidence 45555555555555666666543 345665555543
No 95
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=20.18 E-value=33 Score=30.61 Aligned_cols=17 Identities=53% Similarity=1.110 Sum_probs=13.3
Q ss_pred cCCcEEEEec--CCccchh
Q 038384 46 LRLPTFCLVD--CDPYGFD 62 (283)
Q Consensus 46 ~~lpi~~L~D--~DP~Gi~ 62 (283)
++||+++|+| +||.+++
T Consensus 179 l~IPvIaivDTn~dp~~Vd 197 (231)
T 3bbn_B 179 LGIPTICLIDTNCNPDLAD 197 (231)
T ss_dssp TTCCEEECCCSSSCCSSCS
T ss_pred hCCCEEEEecCCCCcccee
Confidence 7999999997 5666554
Done!