BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>038388
MSGAQGAQPPGSRTATTYESVPQDHNPRTDLHSREDERGIQIDKLQDKVEDAAGRGGPVF
GAAATGIDDNNQQQQQKKKPDLGVTGTG

High Scoring Gene Products

Symbol, full name Information P value
AT2G21820 protein from Arabidopsis thaliana 3.5e-20

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  038388
        (88 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2052511 - symbol:AT2G21820 "AT2G21820" species...   239  3.5e-20   1


>TAIR|locus:2052511 [details] [associations]
            symbol:AT2G21820 "AT2G21820" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC007019
            EMBL:AF324676 EMBL:AF339727 IPI:IPI00548056 PIR:E84605
            RefSeq:NP_565518.1 UniGene:At.14263 PaxDb:Q9SJ17 PRIDE:Q9SJ17
            ProMEX:Q9SJ17 DNASU:816718 EnsemblPlants:AT2G21820.1 GeneID:816718
            KEGG:ath:AT2G21820 TAIR:At2g21820 eggNOG:NOG284848
            HOGENOM:HOG000238133 InParanoid:Q9SJ17 OMA:GIQVDKL PhylomeDB:Q9SJ17
            ProtClustDB:CLSN2688322 ArrayExpress:Q9SJ17 Genevestigator:Q9SJ17
            Uniprot:Q9SJ17
        Length = 78

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 56/89 (62%), Positives = 61/89 (68%)

Query:     1 MSGAQGAQPPGSRTATTYESVPQDHNP-RTDLHSREDERGIQIDKLQDKVEDAAGRGGPV 59
             MSGAQGA+P  SRTATTYESV    N  + D+ S+EDE GIQ+DKLQDKV DAAG GGPV
Sbjct:     1 MSGAQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query:    60 FGAAATGIDDNNXXXXXXXXPDLGVTGTG 88
             FGA   G DD           DLGVTGTG
Sbjct:    61 FGA---GKDDKKQ--------DLGVTGTG 78


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.131   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        80   0.00091  102 3  11 23  0.39    30
                                                     29  0.41    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  432 (46 KB)
  Total size of DFA:  85 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.79u 0.14s 9.93t   Elapsed:  00:00:00
  Total cpu time:  9.79u 0.14s 9.93t   Elapsed:  00:00:00
  Start:  Sat May 11 04:28:08 2013   End:  Sat May 11 04:28:08 2013

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