BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038388
         (88 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
           Mutant: E211s
 pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
           Mutant: E211s
 pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
           Mutant: E211s
 pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
           Mutant: E211s
          Length = 426

 Score = 25.4 bits (54), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 31  LHSREDERGIQIDKLQDKVEDAAGRGGPVFGAAATGI 67
           L +  DE GI +  + D+V+  AGR G +F     G+
Sbjct: 225 LRALCDEHGIML--IADEVQSGAGRTGTLFAMEQMGV 259


>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
           Mutant: I50q
 pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
           Mutant: I50q
 pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
           Mutant: I50q
 pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
           Mutant: I50q
          Length = 426

 Score = 25.4 bits (54), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 31  LHSREDERGIQIDKLQDKVEDAAGRGGPVFGAAATGI 67
           L +  DE GI +  + D+V+  AGR G +F     G+
Sbjct: 225 LRALCDEHGIML--IADEVQSGAGRTGTLFAMEQMGV 259


>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
 pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
 pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
 pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
 pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
           With Aminooxyacetate
 pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
           With Aminooxyacetate
 pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
           With Aminooxyacetate
 pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
           With Aminooxyacetate
          Length = 426

 Score = 25.4 bits (54), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 31  LHSREDERGIQIDKLQDKVEDAAGRGGPVFGAAATGI 67
           L +  DE GI +  + D+V+  AGR G +F     G+
Sbjct: 225 LRALCDEHGIML--IADEVQSGAGRTGTLFAMEQMGV 259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.308    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,772,372
Number of Sequences: 62578
Number of extensions: 96218
Number of successful extensions: 112
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 6
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)