BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038388
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q91Z80|LIPA4_RAT Liprin-alpha-4 (Fragment) OS=Rattus norvegicus GN=Ppfia4 PE=1 SV=1
          Length = 1043

 Score = 29.3 bits (64), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)

Query: 13  RTATTYESVPQDHNPRTDLHSRE-----DERGI---QIDKLQDKVEDAAGRGGPVF 60
           R + T + +  + N R  LH +E     +E+G    +I+KL+ +V+   GRGGP  
Sbjct: 280 RLSDTVDRLLSESNERLQLHLKERMAALEEKGRLSEEIEKLRQEVDQLKGRGGPFV 335


>sp|Q7VKM9|MEND_HAEDU 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate
          synthase OS=Haemophilus ducreyi (strain 35000HP / ATCC
          700724) GN=menD PE=3 SV=1
          Length = 569

 Score = 28.9 bits (63), Expect = 9.0,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 10 PGSR-TATTYESVPQDHNPRTDLHSREDERGI 40
          PGSR T  T E++   H  + + HS  DERG+
Sbjct: 31 PGSRSTPLTLEALQLQHTQQAECHSHFDERGL 62


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.128    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,693,624
Number of Sequences: 539616
Number of extensions: 1513230
Number of successful extensions: 2301
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2297
Number of HSP's gapped (non-prelim): 12
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)