Query 038388
Match_columns 88
No_of_seqs 16 out of 18
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 18:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gjc_A Thiazole biosynthetic e 14.0 40 0.0014 25.2 0.1 8 55-62 301-308 (326)
2 3eo5_A Resuscitation-promoting 9.6 66 0.0023 22.5 0.1 27 12-38 119-146 (171)
3 1oeg_A Apolipoprotein E; siali 7.3 1.3E+02 0.0046 15.8 0.7 15 41-55 9-23 (26)
4 2r2v_A GCN4 leucine zipper; co 6.1 1.1E+02 0.0038 17.3 -0.1 13 43-55 4-16 (34)
5 1peh_A Pepnh1; transferase, nu 5.6 2.3E+02 0.0079 16.1 1.1 12 41-52 11-22 (35)
6 1sr4_C CDT C, cytolethal diste 5.2 1.6E+02 0.0056 21.0 0.3 24 13-36 4-27 (166)
7 4gel_A Mitochondrial cardiolip 5.2 1.7E+02 0.0058 19.0 0.3 17 43-59 84-100 (220)
8 3ozy_A Putative mandelate race 4.6 3.3E+02 0.011 20.0 1.7 28 36-63 357-384 (389)
9 2iss_D Glutamine amidotransfer 4.6 2.4E+02 0.0083 18.4 0.8 18 45-62 80-97 (208)
10 2k5e_A Uncharacterized protein 4.6 2.8E+02 0.0096 16.3 1.0 20 35-54 47-66 (73)
No 1
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=13.98 E-value=40 Score=25.16 Aligned_cols=8 Identities=75% Similarity=1.306 Sum_probs=5.9
Q ss_pred CCCccccc
Q 038388 55 RGGPVFGA 62 (88)
Q Consensus 55 ~GgpvFGa 62 (88)
|+|||||+
T Consensus 301 r~g~~fg~ 308 (326)
T 2gjc_A 301 RMGPTFGA 308 (326)
T ss_dssp BCCSCCHH
T ss_pred CCChhhhh
Confidence 56788886
No 2
>3eo5_A Resuscitation-promoting factor RPFB; cell adhesion, crystal; 1.83A {Mycobacterium tuberculosis} PDB: 1xsf_A
Probab=9.56 E-value=66 Score=22.48 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=21.4
Q ss_pred CcccceeeccCC-CCCCccccCcccccC
Q 038388 12 SRTATTYESVPQ-DHNPRTDLHSREDER 38 (88)
Q Consensus 12 s~TaTTYeSv~~-~~~~rtdlrSrEDe~ 38 (88)
+|+..|+++.++ ...++-++-|++.|-
T Consensus 119 qf~~~tw~~~gg~~~a~~~~~as~~~q~ 146 (171)
T 3eo5_A 119 QFDQGTWEANGGLRYAPRADLATREEQI 146 (171)
T ss_dssp TBCHHHHHHTTGGGTCSSGGGSCHHHHH
T ss_pred ccCHhHHHhcCCccCCCChhhCCHHHHH
Confidence 788899999865 467888888888763
No 3
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=7.27 E-value=1.3e+02 Score=15.83 Aligned_cols=15 Identities=40% Similarity=0.481 Sum_probs=10.9
Q ss_pred chhhhhhhhhhhhcC
Q 038388 41 QIDKLQDKVEDAAGR 55 (88)
Q Consensus 41 ~v~k~qDKV~dAAG~ 55 (88)
|..-|-|||..+++.
T Consensus 9 Q~~~lveKvq~a~~~ 23 (26)
T 1oeg_A 9 QWAGLVEKVQAAVGT 23 (26)
T ss_dssp HHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcc
Confidence 556677888888764
No 4
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=6.09 E-value=1.1e+02 Score=17.27 Aligned_cols=13 Identities=31% Similarity=0.647 Sum_probs=9.6
Q ss_pred hhhhhhhhhhhcC
Q 038388 43 DKLQDKVEDAAGR 55 (88)
Q Consensus 43 ~k~qDKV~dAAG~ 55 (88)
..|+|||++-+++
T Consensus 4 nQledKvEel~~~ 16 (34)
T 2r2v_A 4 KQVADKLEEVASK 16 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4578999887654
No 5
>1peh_A Pepnh1; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=5.61 E-value=2.3e+02 Score=16.06 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=8.8
Q ss_pred chhhhhhhhhhh
Q 038388 41 QIDKLQDKVEDA 52 (88)
Q Consensus 41 ~v~k~qDKV~dA 52 (88)
+|||+.+||.+-
T Consensus 11 ~VDk~K~kvk~V 22 (35)
T 1peh_A 11 RVDKVKKKVKDV 22 (35)
T ss_dssp STTGGGGGTTGG
T ss_pred HHHHHHHHHHhH
Confidence 578888887654
No 6
>1sr4_C CDT C, cytolethal distending toxin protein C; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1
Probab=5.24 E-value=1.6e+02 Score=21.04 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=18.2
Q ss_pred cccceeeccCCCCCCccccCcccc
Q 038388 13 RTATTYESVPQDHNPRTDLHSRED 36 (88)
Q Consensus 13 ~TaTTYeSv~~~~~~rtdlrSrED 36 (88)
-++|||-.|.....+..-|||-+.
T Consensus 4 ~~~~~~~~~~~~~tp~fsiRsl~T 27 (166)
T 1sr4_C 4 PDPTTYPDVELSPPPRISLRSLLT 27 (166)
T ss_dssp -CCCSCTTSCCCCCCEEEEEETTT
T ss_pred CCCCCCCCeeecCCCcEEEEeccc
Confidence 478999999777777777777654
No 7
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=5.19 E-value=1.7e+02 Score=18.97 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=12.9
Q ss_pred hhhhhhhhhhhcCCCcc
Q 038388 43 DKLQDKVEDAAGRGGPV 59 (88)
Q Consensus 43 ~k~qDKV~dAAG~Ggpv 59 (88)
+.+-+.+.+||-||+.|
T Consensus 84 ~~I~~aL~~Aa~RGV~V 100 (220)
T 4gel_A 84 LFLADSIKRALQRGVII 100 (220)
T ss_dssp HHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHcCCeE
Confidence 45667888889899855
No 8
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=4.61 E-value=3.3e+02 Score=19.97 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=22.5
Q ss_pred ccCCcchhhhhhhhhhhhcCCCcccccc
Q 038388 36 DERGIQIDKLQDKVEDAAGRGGPVFGAA 63 (88)
Q Consensus 36 De~gI~v~k~qDKV~dAAG~GgpvFGa~ 63 (88)
|.-||=|+--.|+++...=++.|.|+|+
T Consensus 357 ~~PGlGv~~d~~~l~~~~~~~~~~~~~~ 384 (389)
T 3ozy_A 357 QGPGLGFEIDWDFVAAHAWKGEPAIGAG 384 (389)
T ss_dssp CSSBTCSCBCHHHHHHTBCCSCCSBCCC
T ss_pred CCCcCCcccCHHHHHhccCCCCCccccC
Confidence 4456666666888898888999999998
No 9
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=4.60 E-value=2.4e+02 Score=18.42 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=13.1
Q ss_pred hhhhhhhhhcCCCccccc
Q 038388 45 LQDKVEDAAGRGGPVFGA 62 (88)
Q Consensus 45 ~qDKV~dAAG~GgpvFGa 62 (88)
+.+.+.++..+|.|+||-
T Consensus 80 ~~~~i~~~~~~g~PilGI 97 (208)
T 2iss_D 80 MDEKLVERINNGLPVFAT 97 (208)
T ss_dssp CHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCCCeEEEE
Confidence 445667777788999874
No 10
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=4.58 E-value=2.8e+02 Score=16.31 Aligned_cols=20 Identities=10% Similarity=0.332 Sum_probs=15.6
Q ss_pred cccCCcchhhhhhhhhhhhc
Q 038388 35 EDERGIQIDKLQDKVEDAAG 54 (88)
Q Consensus 35 EDe~gI~v~k~qDKV~dAAG 54 (88)
=..+||.++.|..++++++-
T Consensus 47 a~~~gid~~~ll~~Ln~~~~ 66 (73)
T 2k5e_A 47 ANAHGLNVEDILRDLNALAL 66 (73)
T ss_dssp HHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHH
Confidence 35689999999988887653
Done!