Query 038388
Match_columns 88
No_of_seqs 16 out of 18
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 18:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038388.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038388hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fzfa1 a.25.1.1 (A:10-167) Hy 10.0 50 0.0036 18.3 1.1 10 39-48 1-10 (158)
2 d1akjd_ b.1.1.1 (D:) CD8 {Huma 9.0 35 0.0026 19.2 0.2 9 54-62 105-113 (114)
3 d1xsfa1 d.2.1.8 (A:23-108) Pro 9.0 33 0.0024 20.8 0.0 45 12-61 34-80 (86)
4 d1hh2p4 d.202.1.1 (P:1-126) Tr 8.4 74 0.0054 19.2 1.5 23 31-53 9-31 (126)
5 d1q7ra_ c.23.16.1 (A:) Hypothe 7.9 48 0.0035 20.3 0.4 22 41-62 62-83 (202)
6 d2etja1 c.55.3.1 (A:1-221) Cla 7.0 50 0.0037 21.8 0.2 13 51-63 18-33 (221)
7 d1nd9a_ a.6.1.6 (A:) N-termina 6.9 76 0.0055 17.1 0.9 17 36-52 10-26 (49)
8 d1ekea_ c.55.3.1 (A:) Class II 5.2 75 0.0055 19.4 0.2 14 51-64 7-23 (225)
9 d1uaxa_ c.55.3.1 (A:) Class II 5.0 79 0.0057 19.8 0.2 13 51-63 7-22 (211)
10 d1k9vf_ c.23.16.1 (F:) GAT sub 4.9 81 0.0059 18.8 0.3 18 45-62 66-83 (200)
No 1
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=10.03 E-value=50 Score=18.34 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=7.0
Q ss_pred Ccchhhhhhh
Q 038388 39 GIQIDKLQDK 48 (88)
Q Consensus 39 gI~v~k~qDK 48 (88)
|||++|+.+.
T Consensus 1 ~~p~~~~~~~ 10 (158)
T d2fzfa1 1 GLPIEKMADF 10 (158)
T ss_dssp CBCGGGGTTS
T ss_pred CCChhhcCCC
Confidence 6777777763
No 2
>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.04 E-value=35 Score=19.21 Aligned_cols=9 Identities=33% Similarity=0.239 Sum_probs=6.4
Q ss_pred cCCCccccc
Q 038388 54 GRGGPVFGA 62 (88)
Q Consensus 54 G~GgpvFGa 62 (88)
|.|.|||+.
T Consensus 105 g~G~~vf~~ 113 (114)
T d1akjd_ 105 SHFVPVFLP 113 (114)
T ss_dssp CCCEEECCC
T ss_pred CCCeEEecC
Confidence 677778764
No 3
>d1xsfa1 d.2.1.8 (A:23-108) Probable resuscitation-promoting factor RpfB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.01 E-value=33 Score=20.79 Aligned_cols=45 Identities=27% Similarity=0.391 Sum_probs=30.6
Q ss_pred CcccceeeccCC-CCCCccccCcccccCCcchhhhhhhhhhhhcCCC-cccc
Q 038388 12 SRTATTYESVPQ-DHNPRTDLHSREDERGIQIDKLQDKVEDAAGRGG-PVFG 61 (88)
Q Consensus 12 s~TaTTYeSv~~-~~~~rtdlrSrEDe~gI~v~k~qDKV~dAAG~Gg-pvFG 61 (88)
+|+..|.+++++ ...++-++-|+|+|- .+-.||-.+.|.+- |+-+
T Consensus 34 QFs~~TW~~~GG~~ya~~~~~As~~eQi-----~~A~~l~~~qG~~aWP~C~ 80 (86)
T d1xsfa1 34 QFDQGTWEANGGLRYAPRADLATREEQI-----AVAEVTRLRQGWGAWPVCA 80 (86)
T ss_dssp CCBHHHHHHTTGGGTCSSTTTSCHHHHH-----HHHHHHHHHHSSTTSCHHH
T ss_pred ccCHHHHHHhCCccCCCCcccCCHHHHH-----HHHHHHHHHcCCCccchhh
Confidence 788999999965 477888899998863 22334555566554 4443
No 4
>d1hh2p4 d.202.1.1 (P:1-126) Transcription factor NusA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=8.38 E-value=74 Score=19.15 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=18.9
Q ss_pred cCcccccCCcchhhhhhhhhhhh
Q 038388 31 LHSREDERGIQIDKLQDKVEDAA 53 (88)
Q Consensus 31 lrSrEDe~gI~v~k~qDKV~dAA 53 (88)
|++-+.++||+.+.+.+.+++|.
T Consensus 9 l~~ia~EKgI~~e~v~~aie~al 31 (126)
T d1hh2p4 9 LDQLEEEKGISKEEVIPILEKAL 31 (126)
T ss_dssp TTTTSSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 45677899999999999888764
No 5
>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}
Probab=7.85 E-value=48 Score=20.25 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=16.9
Q ss_pred chhhhhhhhhhhhcCCCccccc
Q 038388 41 QIDKLQDKVEDAAGRGGPVFGA 62 (88)
Q Consensus 41 ~v~k~qDKV~dAAG~GgpvFGa 62 (88)
....+-+.+.++..+|.|++|-
T Consensus 62 ~~~~l~~~I~~~~~~gkPiLGI 83 (202)
T d1q7ra_ 62 DRYGLMEPLKQFAAAGKPMFGT 83 (202)
T ss_dssp HHTTCHHHHHHHHHTTCCEEEE
T ss_pred hhhHHHHHHhhhccccceeeee
Confidence 3345567788899999999984
No 6
>d2etja1 c.55.3.1 (A:1-221) Class II ribonuclease H (RNase HII) {Thermotoga maritima [TaxId: 2336]}
Probab=7.04 E-value=50 Score=21.77 Aligned_cols=13 Identities=77% Similarity=1.229 Sum_probs=8.3
Q ss_pred hhhcCC---Ccccccc
Q 038388 51 DAAGRG---GPVFGAA 63 (88)
Q Consensus 51 dAAG~G---gpvFGa~ 63 (88)
|-|||| ||++-|+
T Consensus 18 DEAGRGpv~GPmVvaa 33 (221)
T d2etja1 18 DEAGRGCLAGPVVAAA 33 (221)
T ss_dssp EEECTTCSBSCEEEEE
T ss_pred cCCCCCCcccceeEEE
Confidence 446997 3666555
No 7
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=6.92 E-value=76 Score=17.14 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=13.8
Q ss_pred ccCCcchhhhhhhhhhh
Q 038388 36 DERGIQIDKLQDKVEDA 52 (88)
Q Consensus 36 De~gI~v~k~qDKV~dA 52 (88)
.+-|++|++|...+.+|
T Consensus 10 ~~v~~~vd~Ll~Ql~~A 26 (49)
T d1nd9a_ 10 AERQTSVERLVQQFADA 26 (49)
T ss_dssp HHHSSSHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHc
Confidence 45689999999988776
No 8
>d1ekea_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.18 E-value=75 Score=19.37 Aligned_cols=14 Identities=57% Similarity=0.909 Sum_probs=8.2
Q ss_pred hhhcCC---Cccccccc
Q 038388 51 DAAGRG---GPVFGAAA 64 (88)
Q Consensus 51 dAAG~G---gpvFGa~~ 64 (88)
|-|||| |||.-|+.
T Consensus 7 DEaGrG~~~GPlvvaav 23 (225)
T d1ekea_ 7 DEAGRGPVLGPMVVCAF 23 (225)
T ss_dssp EEECSSCSBSCEEEEEE
T ss_pred cCCCCcccccceeEEEE
Confidence 346887 36665553
No 9
>d1uaxa_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.96 E-value=79 Score=19.80 Aligned_cols=13 Identities=46% Similarity=0.744 Sum_probs=7.1
Q ss_pred hhhcCCC---cccccc
Q 038388 51 DAAGRGG---PVFGAA 63 (88)
Q Consensus 51 dAAG~Gg---pvFGa~ 63 (88)
|-||||- ||+-|+
T Consensus 7 DEaGRG~l~GPvvvaa 22 (211)
T d1uaxa_ 7 DEAGRGPVIGPLVIGV 22 (211)
T ss_dssp EEECSSCSBSCEEEEE
T ss_pred cCCCcccchhhhEEEE
Confidence 4468873 544444
No 10
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}
Probab=4.93 E-value=81 Score=18.76 Aligned_cols=18 Identities=28% Similarity=0.211 Sum_probs=14.0
Q ss_pred hhhhhhhhhcCCCccccc
Q 038388 45 LQDKVEDAAGRGGPVFGA 62 (88)
Q Consensus 45 ~qDKV~dAAG~GgpvFGa 62 (88)
+-+.+.+++-++.|+||-
T Consensus 66 ~~~~i~~~~~~~~PiLGI 83 (200)
T d1k9vf_ 66 LIDFVRKHVEDERYVVGV 83 (200)
T ss_dssp CHHHHHHHHHTTCEEEEE
T ss_pred ccccccccccccceEEEE
Confidence 456688888889999983
Done!