BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038389
         (353 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ATH|A Chain A, Mitf Apo Structure
 pdb|4ATH|B Chain B, Mitf Apo Structure
          Length = 83

 Score = 29.3 bits (64), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 197 LNDRLSMLRSIVPKISKMD----RTSILGDTIDYLKEL---LERINKLQEEETEL-GANQ 248
           +NDR+  L +++PK +  D    + +IL  ++DY+++L    +R   L+  + +L  AN+
Sbjct: 7   INDRIKELGTLIPKSNDPDXRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEHANR 66

Query: 249 LLIGKFTELK 258
            L+ +  EL+
Sbjct: 67  HLLLRVQELE 76


>pdb|4ATI|A Chain A, Mitf:m-Box Complex
 pdb|4ATI|B Chain B, Mitf:m-Box Complex
 pdb|4ATK|A Chain A, Mitf:e-Box Complex
 pdb|4ATK|B Chain B, Mitf:e-Box Complex
          Length = 118

 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 50/89 (56%), Gaps = 9/89 (10%)

Query: 177 KKLEGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKIS----KMDRTSILGDTIDYLKEL-- 230
           K+ + + + NL+ E      +NDR+  L +++PK +    + ++ +IL  ++DY+++L  
Sbjct: 23  KERQKKDNHNLI-ERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQR 81

Query: 231 -LERINKLQEEETEL-GANQLLIGKFTEL 257
             +R   L+  + +L  AN+ L+ +  EL
Sbjct: 82  EQQRAKDLENRQKKLEHANRHLLLRVQEL 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,891,386
Number of Sequences: 62578
Number of extensions: 382903
Number of successful extensions: 650
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 2
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)