Query 038389
Match_columns 353
No_of_seqs 248 out of 1239
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 2.4E-15 8.3E-20 119.1 6.0 63 182-244 6-69 (82)
2 1an4_A Protein (upstream stimu 99.5 2.3E-14 7.7E-19 108.4 4.1 54 181-234 4-63 (65)
3 1nkp_B MAX protein, MYC proto- 99.5 5.6E-14 1.9E-18 111.1 5.5 62 183-244 3-66 (83)
4 1hlo_A Protein (transcription 99.4 6E-14 2.1E-18 110.4 5.3 63 182-244 12-76 (80)
5 1a0a_A BHLH, protein (phosphat 99.4 1.2E-14 4.2E-19 109.7 0.9 54 182-235 2-62 (63)
6 4ati_A MITF, microphthalmia-as 99.4 1.4E-13 4.8E-18 116.0 6.9 59 182-240 27-89 (118)
7 4h10_B Circadian locomoter out 99.4 3.8E-14 1.3E-18 109.4 3.1 57 182-238 8-65 (71)
8 1nkp_A C-MYC, MYC proto-oncoge 99.4 2.4E-13 8.2E-18 109.0 5.7 61 183-243 7-70 (88)
9 4h10_A ARYL hydrocarbon recept 99.3 1E-13 3.5E-18 107.6 0.2 51 182-232 9-63 (73)
10 1nlw_A MAD protein, MAX dimeri 99.3 1.8E-12 6.1E-17 102.3 6.9 62 183-244 2-66 (80)
11 3u5v_A Protein MAX, transcript 99.2 1.9E-12 6.6E-17 101.1 2.4 59 181-239 4-66 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.0 8.3E-11 2.8E-15 90.0 1.5 54 181-234 11-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 3.2E-10 1.1E-14 84.7 3.7 53 183-235 3-58 (60)
14 4f3l_A Mclock, circadian locom 98.8 2E-09 6.9E-14 104.7 4.7 52 182-233 12-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 7.7E-09 2.6E-13 101.8 2.6 53 182-234 13-69 (387)
16 2lfh_A DNA-binding protein inh 98.4 6E-08 2E-12 73.9 0.7 46 187-232 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.3 9.8E-07 3.3E-11 69.7 5.9 48 194-241 4-55 (83)
18 4aya_A DNA-binding protein inh 97.7 3.7E-05 1.3E-09 62.4 5.3 47 190-236 33-82 (97)
19 1zpv_A ACT domain protein; str 96.5 0.021 7.1E-07 43.8 9.8 67 278-347 5-71 (91)
20 1u8s_A Glycine cleavage system 95.9 0.021 7.3E-07 50.2 7.7 66 278-347 6-71 (192)
21 2nyi_A Unknown protein; protei 95.4 0.022 7.5E-07 50.6 6.1 66 278-346 5-73 (195)
22 2nyi_A Unknown protein; protei 94.3 0.1 3.6E-06 46.2 7.3 66 277-347 92-164 (195)
23 2ko1_A CTR148A, GTP pyrophosph 93.9 0.34 1.2E-05 36.3 8.7 39 278-316 5-43 (88)
24 1u8s_A Glycine cleavage system 93.6 0.26 8.9E-06 43.1 8.6 67 277-347 92-167 (192)
25 3p96_A Phosphoserine phosphata 90.5 0.46 1.6E-05 46.1 6.9 68 277-346 11-78 (415)
26 3o1l_A Formyltetrahydrofolate 89.2 1.6 5.5E-05 41.6 9.5 66 278-346 22-90 (302)
27 2jhe_A Transcription regulator 88.2 0.73 2.5E-05 38.5 5.7 35 280-314 2-36 (190)
28 3n0v_A Formyltetrahydrofolate 87.8 1.6 5.6E-05 41.2 8.4 66 278-347 8-76 (286)
29 3obi_A Formyltetrahydrofolate 87.0 2 6.8E-05 40.6 8.5 67 278-347 6-75 (288)
30 3lou_A Formyltetrahydrofolate 86.3 2 6.8E-05 40.8 8.0 69 277-346 9-80 (292)
31 2f1f_A Acetolactate synthase i 79.3 2.1 7.1E-05 37.4 4.7 64 280-347 5-70 (164)
32 1y7p_A Hypothetical protein AF 78.7 3.6 0.00012 37.8 6.2 63 278-345 4-70 (223)
33 3nrb_A Formyltetrahydrofolate 78.1 5.2 0.00018 37.7 7.4 65 278-347 7-74 (287)
34 2pc6_A Probable acetolactate s 74.5 2.6 8.8E-05 36.8 3.9 64 280-347 6-71 (165)
35 2fgc_A Acetolactate synthase, 70.8 5.9 0.0002 35.5 5.5 64 279-346 30-95 (193)
36 2f06_A Conserved hypothetical 64.9 34 0.0012 27.8 8.7 56 281-344 75-130 (144)
37 2f06_A Conserved hypothetical 57.3 62 0.0021 26.1 9.1 37 280-316 8-44 (144)
38 2wt7_A Proto-oncogene protein 49.2 41 0.0014 24.3 5.8 42 190-244 1-42 (63)
39 2l5g_A GPS2 protein, G protein 40.8 28 0.00095 23.2 3.3 29 215-243 5-33 (38)
40 3he4_B Synzip5; heterodimeric 35.3 53 0.0018 22.0 4.0 22 220-241 5-26 (46)
41 3fx7_A Putative uncharacterize 32.6 57 0.002 25.9 4.6 41 193-241 46-86 (94)
42 2er8_A Regulatory protein Leu3 30.9 31 0.0011 24.8 2.7 20 224-243 48-67 (72)
43 1zme_C Proline utilization tra 30.2 41 0.0014 23.8 3.2 21 225-245 44-64 (70)
44 2zvf_A Alanyl-tRNA synthetase; 29.3 2.4E+02 0.0083 23.3 12.7 54 287-347 82-135 (171)
45 2oqq_A Transcription factor HY 28.3 53 0.0018 22.4 3.1 21 225-245 3-23 (42)
46 2nyg_A YOKD protein; PFAM02522 27.0 67 0.0023 29.9 4.8 52 289-350 12-64 (273)
47 1xkm_B Distinctin chain B; por 26.0 56 0.0019 19.5 2.6 19 218-236 4-22 (26)
48 3sma_A FRBF; N-acetyl transfer 25.2 59 0.002 30.7 4.1 51 290-350 22-73 (286)
49 2dtj_A Aspartokinase; protein- 24.6 1.7E+02 0.0058 24.7 6.7 37 274-310 11-48 (178)
50 2re1_A Aspartokinase, alpha an 23.9 3.1E+02 0.011 22.7 9.4 37 272-308 97-136 (167)
51 2re1_A Aspartokinase, alpha an 23.9 71 0.0024 26.8 4.1 40 272-311 19-59 (167)
52 2jee_A YIIU; FTSZ, septum, coi 23.6 87 0.003 24.2 4.0 23 220-242 15-37 (81)
53 1dh3_A Transcription factor CR 22.9 72 0.0025 22.5 3.3 20 225-244 22-41 (55)
54 3ijw_A Aminoglycoside N3-acety 22.3 1.1E+02 0.0038 28.4 5.4 53 288-350 13-66 (268)
55 2jqq_A Conserved oligomeric go 22.2 35 0.0012 30.7 1.7 46 193-239 52-97 (204)
56 1gd2_E Transcription factor PA 21.4 77 0.0026 23.7 3.3 17 225-241 29-45 (70)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.56 E-value=2.4e-15 Score=119.12 Aligned_cols=63 Identities=27% Similarity=0.495 Sum_probs=58.3
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhhcCCCC-CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038389 182 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI-SKMDRTSILGDTIDYLKELLERINKLQEEETEL 244 (353)
Q Consensus 182 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~-~k~dKasIL~~ai~YIk~Lq~~v~~L~~~~~e~ 244 (353)
++..|+.+||+||++||+.|..|+++||.. .|++|++||.+||+||++|+.+++.|+.+...+
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999986 899999999999999999999999999876554
No 2
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.47 E-value=2.3e-14 Score=108.44 Aligned_cols=54 Identities=30% Similarity=0.498 Sum_probs=49.4
Q ss_pred CCCccchHHHHHHHHHHHHHHHhhhhcCCCCC------CCCccchhHHHHHHHHHHHHHH
Q 038389 181 GQPSKNLMAERRRRKRLNDRLSMLRSIVPKIS------KMDRTSILGDTIDYLKELLERI 234 (353)
Q Consensus 181 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~~~------k~dKasIL~~ai~YIk~Lq~~v 234 (353)
.++..|+.+||+||.+||+.|..|++|||... |++|++||.+||+||++||++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999864 7899999999999999999864
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.45 E-value=5.6e-14 Score=111.15 Aligned_cols=62 Identities=26% Similarity=0.441 Sum_probs=56.9
Q ss_pred CccchHHHHHHHHHHHHHHHhhhhcCCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038389 183 PSKNLMAERRRRKRLNDRLSMLRSIVPK--ISKMDRTSILGDTIDYLKELLERINKLQEEETEL 244 (353)
Q Consensus 183 ~~~h~~~ER~RR~~in~~~~~LrslvP~--~~k~dKasIL~~ai~YIk~Lq~~v~~L~~~~~e~ 244 (353)
+..|+..||+||.+||+.|..|+++||. ..|++|++||..||+||+.|+++++.|+.+..++
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999997 4799999999999999999999999998876554
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=6e-14 Score=110.37 Aligned_cols=63 Identities=25% Similarity=0.481 Sum_probs=57.8
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhhcCCCC--CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038389 182 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI--SKMDRTSILGDTIDYLKELLERINKLQEEETEL 244 (353)
Q Consensus 182 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~--~k~dKasIL~~ai~YIk~Lq~~v~~L~~~~~e~ 244 (353)
++..|+..||+||.+||+.|..|+++||.. .|++|++||..||+||+.|++++++|+.+..++
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999975 689999999999999999999999999876544
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.44 E-value=1.2e-14 Score=109.74 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=48.7
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhhcCCCC-------CCCCccchhHHHHHHHHHHHHHHH
Q 038389 182 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI-------SKMDRTSILGDTIDYLKELLERIN 235 (353)
Q Consensus 182 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~-------~k~dKasIL~~ai~YIk~Lq~~v~ 235 (353)
++.+|+.+||+||.+||..|..|++|||.. .+.+||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999964 466799999999999999998753
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.43 E-value=1.4e-13 Score=116.05 Aligned_cols=59 Identities=27% Similarity=0.573 Sum_probs=51.7
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhhcCCCCC----CCCccchhHHHHHHHHHHHHHHHHHHHH
Q 038389 182 QPSKNLMAERRRRKRLNDRLSMLRSIVPKIS----KMDRTSILGDTIDYLKELLERINKLQEE 240 (353)
Q Consensus 182 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~~----k~dKasIL~~ai~YIk~Lq~~v~~L~~~ 240 (353)
++..|+.+||+||++||++|..|++|||... |++|++||.+||+||++||++++.|+++
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999753 6789999999999999999999999875
No 7
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.43 E-value=3.8e-14 Score=109.40 Aligned_cols=57 Identities=28% Similarity=0.457 Sum_probs=51.8
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhhcCCCC-CCCCccchhHHHHHHHHHHHHHHHHHH
Q 038389 182 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI-SKMDRTSILGDTIDYLKELLERINKLQ 238 (353)
Q Consensus 182 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~-~k~dKasIL~~ai~YIk~Lq~~v~~L~ 238 (353)
++..|+.+||+||++||+.|..|++|||.. .|+||++||..||+||+.||+++.=|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 356899999999999999999999999964 699999999999999999999886554
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=2.4e-13 Score=109.04 Aligned_cols=61 Identities=26% Similarity=0.388 Sum_probs=55.3
Q ss_pred CccchHHHHHHHHHHHHHHHhhhhcCCCC---CCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 038389 183 PSKNLMAERRRRKRLNDRLSMLRSIVPKI---SKMDRTSILGDTIDYLKELLERINKLQEEETE 243 (353)
Q Consensus 183 ~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIL~~ai~YIk~Lq~~v~~L~~~~~e 243 (353)
+..|+..||+||.+||+.|..|+.+||.. .|.+|++||..||+||++|+.+.+.+..++..
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~ 70 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDL 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999975 59999999999999999999999988775433
No 9
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.34 E-value=1e-13 Score=107.61 Aligned_cols=51 Identities=27% Similarity=0.452 Sum_probs=47.1
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhhcCCCC----CCCCccchhHHHHHHHHHHHH
Q 038389 182 QPSKNLMAERRRRKRLNDRLSMLRSIVPKI----SKMDRTSILGDTIDYLKELLE 232 (353)
Q Consensus 182 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~----~k~dKasIL~~ai~YIk~Lq~ 232 (353)
++..|..+||+||++||+.|..|++|||.+ .|+||++||..||+||+.|+.
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999964 799999999999999999974
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.33 E-value=1.8e-12 Score=102.26 Aligned_cols=62 Identities=26% Similarity=0.250 Sum_probs=55.9
Q ss_pred CccchHHHHHHHHHHHHHHHhhhhcCCCC---CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038389 183 PSKNLMAERRRRKRLNDRLSMLRSIVPKI---SKMDRTSILGDTIDYLKELLERINKLQEEETEL 244 (353)
Q Consensus 183 ~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIL~~ai~YIk~Lq~~v~~L~~~~~e~ 244 (353)
+..|+..||+||..||+.|..|+++||.. .|.+|++||..|++||++|+++.+.|+.++..+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999964 578899999999999999999999998876544
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.24 E-value=1.9e-12 Score=101.15 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=48.3
Q ss_pred CCCccchHHHHHHHHHHHHHHHhhhhcCCC---CCCC-CccchhHHHHHHHHHHHHHHHHHHH
Q 038389 181 GQPSKNLMAERRRRKRLNDRLSMLRSIVPK---ISKM-DRTSILGDTIDYLKELLERINKLQE 239 (353)
Q Consensus 181 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~---~~k~-dKasIL~~ai~YIk~Lq~~v~~L~~ 239 (353)
.++..|+..||+||..||+.|..||.+||. ..|. .|++||..||+||+.|++++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999995 3444 6778999999999999999988764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.99 E-value=8.3e-11 Score=90.03 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=49.0
Q ss_pred CCCccchHHHHHHHHHHHHHHHhhhhcCCC--CCCCCccchhHHHHHHHHHHHHHH
Q 038389 181 GQPSKNLMAERRRRKRLNDRLSMLRSIVPK--ISKMDRTSILGDTIDYLKELLERI 234 (353)
Q Consensus 181 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~--~~k~dKasIL~~ai~YIk~Lq~~v 234 (353)
.++..|+..||+|+..||+.|..||.+||. ..|++|..||..||+||+.|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999996 368899999999999999999865
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.96 E-value=3.2e-10 Score=84.73 Aligned_cols=53 Identities=30% Similarity=0.363 Sum_probs=47.8
Q ss_pred CccchHHHHHHHHHHHHHHHhhhhcCCCC---CCCCccchhHHHHHHHHHHHHHHH
Q 038389 183 PSKNLMAERRRRKRLNDRLSMLRSIVPKI---SKMDRTSILGDTIDYLKELLERIN 235 (353)
Q Consensus 183 ~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIL~~ai~YIk~Lq~~v~ 235 (353)
+..|+..||+|+..||+.|..||.+||.. .|..|..||..||+||+.|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999974 588999999999999999998754
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.81 E-value=2e-09 Score=104.73 Aligned_cols=52 Identities=29% Similarity=0.531 Sum_probs=42.7
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhhcCC-CCCCCCccchhHHHHHHHHHHHHH
Q 038389 182 QPSKNLMAERRRRKRLNDRLSMLRSIVP-KISKMDRTSILGDTIDYLKELLER 233 (353)
Q Consensus 182 ~~~~h~~~ER~RR~~in~~~~~LrslvP-~~~k~dKasIL~~ai~YIk~Lq~~ 233 (353)
++..|+.+||+||++||..|..|++||| ...|+||++||..||.|||.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 3567999999999999999999999999 567999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.64 E-value=7.7e-09 Score=101.83 Aligned_cols=53 Identities=26% Similarity=0.414 Sum_probs=48.2
Q ss_pred CCccchHHHHHHHHHHHHHHHhhhhcCC----CCCCCCccchhHHHHHHHHHHHHHH
Q 038389 182 QPSKNLMAERRRRKRLNDRLSMLRSIVP----KISKMDRTSILGDTIDYLKELLERI 234 (353)
Q Consensus 182 ~~~~h~~~ER~RR~~in~~~~~LrslvP----~~~k~dKasIL~~ai~YIk~Lq~~v 234 (353)
++.+|+.+||+||++||+.|..|++||| ...|+||++||..||.|||.|+...
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 3678999999999999999999999999 5689999999999999999998543
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.37 E-value=6e-08 Score=73.91 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhcCCCC---CCCCccchhHHHHHHHHHHHH
Q 038389 187 LMAERRRRKRLNDRLSMLRSIVPKI---SKMDRTSILGDTIDYLKELLE 232 (353)
Q Consensus 187 ~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIL~~ai~YIk~Lq~ 232 (353)
+..||+|+..||+-|..||.+||.. .|+.|..||.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4568889999999999999999974 588999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.29 E-value=9.8e-07 Score=69.70 Aligned_cols=48 Identities=27% Similarity=0.574 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhhcCCCC----CCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 038389 194 RKRLNDRLSMLRSIVPKI----SKMDRTSILGDTIDYLKELLERINKLQEEE 241 (353)
Q Consensus 194 R~~in~~~~~LrslvP~~----~k~dKasIL~~ai~YIk~Lq~~v~~L~~~~ 241 (353)
|..||+++..|..|||.. .|.+|++||..|++||++||+.++.+.++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 478999999999999999999888887653
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.72 E-value=3.7e-05 Score=62.41 Aligned_cols=47 Identities=30% Similarity=0.464 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhhhcCCCC---CCCCccchhHHHHHHHHHHHHHHHH
Q 038389 190 ERRRRKRLNDRLSMLRSIVPKI---SKMDRTSILGDTIDYLKELLERINK 236 (353)
Q Consensus 190 ER~RR~~in~~~~~LrslvP~~---~k~dKasIL~~ai~YIk~Lq~~v~~ 236 (353)
||.|=..||+-|..||.+||.. .|..|..+|.-||+||+.|++-+++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4666789999999999999963 5789999999999999999987544
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.51 E-value=0.021 Score=43.83 Aligned_cols=67 Identities=10% Similarity=0.190 Sum_probs=51.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 278 DTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFNDFSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 278 ~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
.+.|.|.|+++||+|.+|...|-+.|..|.+.+.....+...-.+..+. ....+.++|.++|.+...
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~---~~~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS---DEKQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE---SSCCCHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe---CCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999988877764332333332 224578999999987653
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.86 E-value=0.021 Score=50.17 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=51.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 278 DTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFNDFSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 278 ~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
.+.|.|.|+++||++..|..+|.+.|+.|+.+.+....+..+-.+.+... . ...+.|+++|.+.++
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~--~--~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS--P--SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC--H--HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC--C--CCHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999887743334433321 1 256788888887653
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.42 E-value=0.022 Score=50.62 Aligned_cols=66 Identities=12% Similarity=0.217 Sum_probs=48.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEeehhhhccccc--cCHHHHHHHHHHhh
Q 038389 278 DTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFND-FSLQASCSEAAERRTL--LSSEEIKQALFSNA 346 (353)
Q Consensus 278 ~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d-~~l~a~~~e~~~~~~~--is~e~IkQAL~kaa 346 (353)
.+.|.|.|++++|++..|...|.++|+.|+.+.+.+..+ |.+ .+.+... ... ...+.|+++|..++
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m-~~~v~~~--~~~~~~~~~~l~~~L~~~~ 73 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAM-IVLVSLN--AKDGKLIQSALESALPGFQ 73 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEE-EEEEEES--SSSSHHHHHHHHHHSTTCE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEE-EEEEEec--CccchhHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999998876 444 3333221 110 11567777776554
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.25 E-value=0.1 Score=46.16 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=49.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeC------C-eEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 277 IDTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFN------D-FSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 277 ~~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~------d-~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
....|+|.|++++|++..|-..|-++|+.|..+.+.+.. + |.+.... ... ...+ ++|+++|...+.
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~-~~~---~~~~-~~l~~~l~~~a~ 164 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRV-AFP---FPLY-QEVVTALSRVEE 164 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEE-EEE---GGGH-HHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEE-EcC---CCcc-HHHHHHHHHHHH
Confidence 346799999999999999999999999999999999886 2 3333222 111 1345 889999887653
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=93.90 E-value=0.34 Score=36.26 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=35.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCC
Q 038389 278 DTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFND 316 (353)
Q Consensus 278 ~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d 316 (353)
.+.|.|.+.+++|+|.+|..+|.+.|+.|.+..+...++
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 457888999999999999999999999999988887666
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.61 E-value=0.26 Score=43.07 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=50.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCC---------eEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 277 IDTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFND---------FSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 277 ~~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d---------~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
....|.|.|++++|++.+|.+.|.+.|+.|..+...+... |.+.... .. ....+.++|+++|...+.
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~-~~---~~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISA-RV---DSGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEE-EE---CTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEE-eC---CCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999887751 2222221 11 124578999999987653
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=90.47 E-value=0.46 Score=46.14 Aligned_cols=68 Identities=9% Similarity=0.120 Sum_probs=50.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEeehhhhccccccCHHHHHHHHHHhh
Q 038389 277 IDTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFNDFSLQASCSEAAERRTLLSSEEIKQALFSNA 346 (353)
Q Consensus 277 ~~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d~~l~a~~~e~~~~~~~is~e~IkQAL~kaa 346 (353)
..+.|.|.|++|+|+...|...|-+.|..|+..+.+...+..+-....... ...++.++|+++|...+
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~--~~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP--ADVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC--HHHHTSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec--CCcCCHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999888843222222221 11235578888887664
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=89.24 E-value=1.6 Score=41.63 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=50.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEeehhhhccccccCHHHHHHHHHHhh
Q 038389 278 DTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCF--ND-FSLQASCSEAAERRTLLSSEEIKQALFSNA 346 (353)
Q Consensus 278 ~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~--~d-~~l~a~~~e~~~~~~~is~e~IkQAL~kaa 346 (353)
...|.|.|++++|+...|-..|-+.|..|+.++.+.. .+ |.+.+.. .. .....+.++|+++|...+
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~-~~--~~~~~~~~~L~~~l~~la 90 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEI-RA--DTLPFDLDGFREAFTPIA 90 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEE-EG--GGSSSCHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEE-ec--CCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999999999999988865 33 4443322 21 122467899999987654
No 27
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=88.24 E-value=0.73 Score=38.47 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=32.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeee
Q 038389 280 RIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCF 314 (353)
Q Consensus 280 ~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~ 314 (353)
.|+|.|.+|+|+|.+|+.+|.+.++++...++...
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 58899999999999999999999999999988766
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=87.79 E-value=1.6 Score=41.17 Aligned_cols=66 Identities=9% Similarity=-0.008 Sum_probs=49.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 278 DTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCF--ND-FSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 278 ~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~--~d-~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
.+.|.|.|++++|+...|-..|-+.|+.|+..+.... .+ |.+.+.. ... . ..+.++|+++|...+.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~--~-~~~~~~L~~~f~~la~ 76 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEF-RQP--D-DFDEAGFRAGLAERSE 76 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE-ECC--S-SCCHHHHHHHHHHHHG
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEE-ecC--C-CCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999888742 33 4443322 221 1 4788999999976543
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=86.97 E-value=2 Score=40.63 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=49.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 278 DTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCF--ND-FSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 278 ~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~--~d-~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
.+.|.|.|++++|+...|-..|-+.|+.|+..+.... .+ |.+.+.. .. .....+.++|+++|...+.
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~--~~~~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVF-NA--AAKVIPLASLRTGFGVIAA 75 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE-EE--SSCCCCHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEE-Ec--CCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999887632 33 4443322 22 1224678999999976543
No 30
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=86.29 E-value=2 Score=40.76 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=48.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEeehhhhccccccCHHHHHHHHHHhh
Q 038389 277 IDTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCF--ND-FSLQASCSEAAERRTLLSSEEIKQALFSNA 346 (353)
Q Consensus 277 ~~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~--~d-~~l~a~~~e~~~~~~~is~e~IkQAL~kaa 346 (353)
....|.+.|++++|+...|-..|-+.|+.|+..+.... .+ |.+.+.. .........+.++|+++|...+
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~~~~~~~~~~~L~~~f~~la 80 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF-HATDDADALRVDALRREFEPIA 80 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE-EECC----CCHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE-EccCcccCCCHHHHHHHHHHHH
Confidence 34679999999999999999999999999999888742 33 4443321 1100011367899999987654
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=79.25 E-value=2.1 Score=37.35 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=45.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCC--eEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 280 RIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFND--FSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 280 ~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d--~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
.|.|...+++|+|.+|...|...|+.|.+.++....+ ...-++.+.. ..-..+.|...|.+...
T Consensus 5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~----d~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG----DEKVLEQIEKQLHKLVD 70 (164)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES----CHHHHHHHHHHHHHSTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec----cHHHHHHHHHHHcCCCC
Confidence 5777889999999999999999999999888876653 2222222221 12345677777777654
No 32
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=78.68 E-value=3.6 Score=37.78 Aligned_cols=63 Identities=14% Similarity=0.000 Sum_probs=43.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeC----CeEEEEeehhhhccccccCHHHHHHHHHHh
Q 038389 278 DTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFN----DFSLQASCSEAAERRTLLSSEEIKQALFSN 345 (353)
Q Consensus 278 ~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~----d~~l~a~~~e~~~~~~~is~e~IkQAL~ka 345 (353)
.+.|.|.+.+|+|+|.+|+.+|-+.+..|.+.+..... +...... .+. ... ..++|-+.|.+.
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~-IEV---~d~-~Le~LL~kLrkI 70 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY-FEI---EGG-DFEKILERVKTF 70 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE-EEE---CSS-CHHHHHHHHHTC
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE-EEE---CCC-CHHHHHHHHhCC
Confidence 46788899999999999999999999999999988764 3222222 332 233 788888888765
No 33
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=78.05 E-value=5.2 Score=37.73 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=45.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeee--CC-eEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 278 DTRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCF--ND-FSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 278 ~v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~--~d-~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
...|.+.|++++|+...|-..|-+.|..|+..+.... .+ |.+.+.. ... ..+.++|+++|...+.
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~-~~~----~~~~~~L~~~f~~la~ 74 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV-EIP----VAGVNDFNSAFGKVVE 74 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE-ECC----C---CHHHHHHHHHHG
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE-EcC----CCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999888632 33 4443322 111 1234488888876543
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=74.47 E-value=2.6 Score=36.85 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=45.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCC--eEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 280 RIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFND--FSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 280 ~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d--~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
.|.|..++++|+|.+|...|...|+.|.+.++....+ ...-++.+.. . .-..+.|...|.+...
T Consensus 6 ~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~---d-~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 6 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG---P-DEIVEQITKQLNKLIE 71 (165)
T ss_dssp EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE---C-HHHHHHHHHHHHHSTT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec---c-HHHHHHHHHHhcCCCC
Confidence 5677788999999999999999999999988876553 3222322221 1 2345677777777654
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=70.77 E-value=5.9 Score=35.51 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=45.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCC--eEEEEeehhhhccccccCHHHHHHHHHHhh
Q 038389 279 TRIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFND--FSLQASCSEAAERRTLLSSEEIKQALFSNA 346 (353)
Q Consensus 279 v~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d--~~l~a~~~e~~~~~~~is~e~IkQAL~kaa 346 (353)
-.|.|..+++||.|.+|...|...|+.|.+-.+....+ ...-++.+.. ..-..++|++.|.+.+
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g----~e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG----DDKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE----CTTHHHHHHHHHTTST
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC----CHHHHHHHHHHhcCcC
Confidence 35677778999999999999999999999888875554 2222322321 1344677888887754
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=64.86 E-value=34 Score=27.80 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=35.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEeehhhhccccccCHHHHHHHHHH
Q 038389 281 IDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFNDFSLQASCSEAAERRTLLSSEEIKQALFS 344 (353)
Q Consensus 281 I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d~~l~a~~~e~~~~~~~is~e~IkQAL~k 344 (353)
|.+.-+++||.+.+++++|.+.|+.|....++.-++...-.+ +. -+.+...++|.+
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i--~~------~d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI--RP------SNMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE--EE------SCHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE--Ee------CCHHHHHHHHHH
Confidence 444557999999999999999999997544332222221111 11 156677777766
No 37
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=57.30 E-value=62 Score=26.14 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEeeeCC
Q 038389 280 RIDICCSSKPGLLLSTVNTLEVLGLEIQQCVISCFND 316 (353)
Q Consensus 280 ~I~I~C~~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d 316 (353)
.|.|..++++|.|.+|...|.+.|+.|..-.+....+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 4666778999999999999999999998766554444
No 38
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.21 E-value=41 Score=24.32 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 038389 190 ERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKLQEEETEL 244 (353)
Q Consensus 190 ER~RR~~in~~~~~LrslvP~~~k~dKasIL~~ai~YIk~Lq~~v~~L~~~~~e~ 244 (353)
||++|.+...+.++-++= ..-..|+..|+.+++.|+.+...+
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777662 233467777777777777654433
No 39
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.83 E-value=28 Score=23.16 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=24.6
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 038389 215 DRTSILGDTIDYLKELLERINKLQEEETE 243 (353)
Q Consensus 215 dKasIL~~ai~YIk~Lq~~v~~L~~~~~e 243 (353)
..+..|+++-+-|..|+.+++.|++++.+
T Consensus 5 ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 5 EERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567999999999999999999998754
No 40
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=35.32 E-value=53 Score=22.03 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 038389 220 LGDTIDYLKELLERINKLQEEE 241 (353)
Q Consensus 220 L~~ai~YIk~Lq~~v~~L~~~~ 241 (353)
+.+--+||++|+++-.+|+.-+
T Consensus 5 vkelknyiqeleernaelknlk 26 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHH
Confidence 5567789999999988887643
No 41
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=32.59 E-value=57 Score=25.91 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 038389 193 RRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKLQEEE 241 (353)
Q Consensus 193 RR~~in~~~~~LrslvP~~~k~dKasIL~~ai~YIk~Lq~~v~~L~~~~ 241 (353)
.|.+..+.|..|.+.+- --.+.|-+||..|+++|+.|++..
T Consensus 46 kr~kFee~fe~l~s~l~--------~f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTFN--------EFDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHhhHHHhHHHHHHHHHhHHHH
Confidence 35667777777766552 235688899999999999999854
No 42
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=30.90 E-value=31 Score=24.80 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038389 224 IDYLKELLERINKLQEEETE 243 (353)
Q Consensus 224 i~YIk~Lq~~v~~L~~~~~e 243 (353)
-.||..|+++|+.|+.....
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999986543
No 43
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=30.20 E-value=41 Score=23.85 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038389 225 DYLKELLERINKLQEEETELG 245 (353)
Q Consensus 225 ~YIk~Lq~~v~~L~~~~~e~~ 245 (353)
.||..|+++++.|+.....+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 588888888888888655443
No 44
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=29.33 E-value=2.4e+02 Score=23.31 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=31.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEeeeCCeEEEEeehhhhccccccCHHHHHHHHHHhhc
Q 038389 287 SKPGLLLSTVNTLEVLGLEIQQCVISCFNDFSLQASCSEAAERRTLLSSEEIKQALFSNAG 347 (353)
Q Consensus 287 ~r~GlL~~Il~aLe~LgLdVv~A~IS~~~d~~l~a~~~e~~~~~~~is~e~IkQAL~kaag 347 (353)
.....|-.++..|.+. +.+-.-.+..++ ...+..+.. + .+++.+|...+.+.+|
T Consensus 82 ~d~~~lr~~~~~l~~~--~~vv~l~~~~~~-~~~v~~~~~--~--~~~a~~lvk~~~~~~g 135 (171)
T 2zvf_A 82 ADMQALQKLAERLAEK--GAVGCLMAKGEG-KVFVVTFSG--Q--KYDARELLREIGRVAK 135 (171)
T ss_dssp CCHHHHHHHHHHHHHT--TEEEEEEEECSS-SEEEEEEES--S--SSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcC--CCEEEEEEcCCC-eEEEEEECC--C--CCCHHHHHHHHHHHcC
Confidence 3455778888888776 222223333355 222221111 1 4899999999988876
No 45
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.31 E-value=53 Score=22.37 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038389 225 DYLKELLERINKLQEEETELG 245 (353)
Q Consensus 225 ~YIk~Lq~~v~~L~~~~~e~~ 245 (353)
.|+-+|+.++++|+.+..++.
T Consensus 3 aYl~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 488888888888887655543
No 46
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=26.97 E-value=67 Score=29.93 Aligned_cols=52 Identities=23% Similarity=0.169 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEeehhhhccccccCHHHHHHHHHHhhccCC
Q 038389 289 PGLLLSTVNTLEVLGLEIQQCVISCFND-FSLQASCSEAAERRTLLSSEEIKQALFSNAGYGG 350 (353)
Q Consensus 289 ~GlL~~Il~aLe~LgLdVv~A~IS~~~d-~~l~a~~~e~~~~~~~is~e~IkQAL~kaag~gg 350 (353)
+---.+|++.|++||+.= ++ ..+|++-... +...-.++.|.+||++++|..|
T Consensus 12 ~~T~~~L~~~L~~LGI~~--------Gd~llVHsSl~~l--G~v~gg~~~vi~AL~~~vg~~G 64 (273)
T 2nyg_A 12 PRTKQSITEDLKALGLKK--------GMTVLVHSSLSSI--GWVNGGAVAVIQALIDVVTEEG 64 (273)
T ss_dssp CBCHHHHHHHHHHHTCCT--------TCEEEEEECSGGG--CCBTTHHHHHHHHHHHHHTTTS
T ss_pred CcCHHHHHHHHHHcCCCC--------CCEEEEEechHHh--CCCCCCHHHHHHHHHHHhCCCC
Confidence 345678999999999841 12 2578876665 3344458999999999999766
No 47
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=26.05 E-value=56 Score=19.53 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 038389 218 SILGDTIDYLKELLERINK 236 (353)
Q Consensus 218 sIL~~ai~YIk~Lq~~v~~ 236 (353)
|-|-+|-.|+.+|..+++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5577889999999887653
No 48
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=25.25 E-value=59 Score=30.70 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEeehhhhccccccCHHHHHHHHHHhhccCC
Q 038389 290 GLLLSTVNTLEVLGLEIQQCVISCFND-FSLQASCSEAAERRTLLSSEEIKQALFSNAGYGG 350 (353)
Q Consensus 290 GlL~~Il~aLe~LgLdVv~A~IS~~~d-~~l~a~~~e~~~~~~~is~e~IkQAL~kaag~gg 350 (353)
---.+|++.|++||+.= ++ ..+|++-... +...-.++.|.+||+.++|..|
T Consensus 22 ~T~~~L~~~L~~LGI~~--------Gd~llVHsSL~~l--G~v~Gga~~vi~AL~~~vg~~G 73 (286)
T 3sma_A 22 VTRDRLASDLAALGVRP--------GGVLLVHASLSAL--GWVCGGAQAVVLALQDAVGKEG 73 (286)
T ss_dssp ECHHHHHHHHHHHTCCT--------TCEEEEEECSTTS--CEETTHHHHHHHHHHHHHCTTC
T ss_pred cCHHHHHHHHHHcCCCC--------CCEEEEEechHHh--CCCCCCHHHHHHHHHHHhcCCC
Confidence 34578999999999842 11 1577776554 2333448999999999999766
No 49
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=24.59 E-value=1.7e+02 Score=24.73 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=27.7
Q ss_pred EecceeEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEE
Q 038389 274 RREIDTRIDIC-CSSKPGLLLSTVNTLEVLGLEIQQCV 310 (353)
Q Consensus 274 ~~~~~v~I~I~-C~~r~GlL~~Il~aLe~LgLdVv~A~ 310 (353)
...+.+.|.|. -++++|.+.+|++.|.+.|+.|..-.
T Consensus 11 ~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~ 48 (178)
T 2dtj_A 11 TDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVL 48 (178)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEE
T ss_pred ecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEE
Confidence 33455677774 47899999999999999996665433
No 50
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=23.87 E-value=3.1e+02 Score=22.68 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.0
Q ss_pred eEEecceeEEEEEcC---CCCChHHHHHHHHHhCCCeEEE
Q 038389 272 VERREIDTRIDICCS---SKPGLLLSTVNTLEVLGLEIQQ 308 (353)
Q Consensus 272 Ve~~~~~v~I~I~C~---~r~GlL~~Il~aLe~LgLdVv~ 308 (353)
|.....-..|.|... .++|.+.+++++|.+.|+.|..
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ 136 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM 136 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence 344445566777764 4899999999999999999986
No 51
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=23.87 E-value=71 Score=26.80 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=30.8
Q ss_pred eEEecceeEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEE
Q 038389 272 VERREIDTRIDICC-SSKPGLLLSTVNTLEVLGLEIQQCVI 311 (353)
Q Consensus 272 Ve~~~~~v~I~I~C-~~r~GlL~~Il~aLe~LgLdVv~A~I 311 (353)
|....+...|.|.. ++++|.+.+|+++|.+.|+.|..-..
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 33344556777774 78999999999999999998875443
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.61 E-value=87 Score=24.20 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 038389 220 LGDTIDYLKELLERINKLQEEET 242 (353)
Q Consensus 220 L~~ai~YIk~Lq~~v~~L~~~~~ 242 (353)
+..||+-|.-||.+|++|+.+..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~ 37 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNN 37 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988653
No 53
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=22.92 E-value=72 Score=22.51 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038389 225 DYLKELLERINKLQEEETEL 244 (353)
Q Consensus 225 ~YIk~Lq~~v~~L~~~~~e~ 244 (353)
.||.+|+.+|..|+.+...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998875443
No 54
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=22.27 E-value=1.1e+02 Score=28.43 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=37.6
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEeeeCC-eEEEEeehhhhccccccCHHHHHHHHHHhhccCC
Q 038389 288 KPGLLLSTVNTLEVLGLEIQQCVISCFND-FSLQASCSEAAERRTLLSSEEIKQALFSNAGYGG 350 (353)
Q Consensus 288 r~GlL~~Il~aLe~LgLdVv~A~IS~~~d-~~l~a~~~e~~~~~~~is~e~IkQAL~kaag~gg 350 (353)
++---.+|++.|++||+.= ++ ..+|++-... +...--++.|.+||++++|..|
T Consensus 13 ~~~t~~~l~~~L~~LGi~~--------Gd~llVHsSl~~l--G~v~gg~~~vi~AL~~~vg~~G 66 (268)
T 3ijw_A 13 LPNTIKTITNDLRKLGLKK--------GMTVIVHSSLSSI--GWISGGAVAVVEALMEVITEEG 66 (268)
T ss_dssp SCBCHHHHHHHHHHHTCCT--------TCEEEEEECTGGG--CCBTTHHHHHHHHHHHHHCTTS
T ss_pred CCcCHHHHHHHHHHcCCCC--------CCEEEEEechHHh--CCCCCCHHHHHHHHHHHhCCCC
Confidence 3445678999999999842 11 1578776664 3333458999999999999766
No 55
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=22.21 E-value=35 Score=30.65 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 038389 193 RRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYLKELLERINKLQE 239 (353)
Q Consensus 193 RR~~in~~~~~LrslvP~~~k~dKasIL~~ai~YIk~Lq~~v~~L~~ 239 (353)
=|..++.-...||.|+- ..-.....++.+||+|+|.|-.=...|+.
T Consensus 52 v~~Dl~~F~~QL~qL~~-~~i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIK-DDISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-HSCSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777788888762 23346678999999999999887666653
No 56
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.42 E-value=77 Score=23.70 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038389 225 DYLKELLERINKLQEEE 241 (353)
Q Consensus 225 ~YIk~Lq~~v~~L~~~~ 241 (353)
.||++|+.+|.+|+...
T Consensus 29 ~~i~~LE~~v~~le~~~ 45 (70)
T 1gd2_E 29 DHLKALETQVVTLKELH 45 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888887643
Done!