Query 038390
Match_columns 228
No_of_seqs 261 out of 2736
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7.1E-30 1.5E-34 241.6 17.8 80 1-82 52-145 (1153)
2 PLN03194 putative disease resi 99.8 3.1E-21 6.7E-26 143.6 6.2 73 1-86 67-150 (187)
3 KOG0617 Ras suppressor protein 99.6 2.7E-16 5.8E-21 115.8 -0.0 122 101-228 44-189 (264)
4 KOG0617 Ras suppressor protein 99.5 2E-15 4.3E-20 111.2 -1.7 122 100-228 21-166 (264)
5 PLN00113 leucine-rich repeat r 99.4 4E-13 8.7E-18 126.7 9.1 113 113-225 160-273 (968)
6 PLN00113 leucine-rich repeat r 99.4 6E-13 1.3E-17 125.5 8.0 113 113-225 184-297 (968)
7 KOG0472 Leucine-rich repeat pr 99.4 3E-13 6.4E-18 111.4 4.8 110 113-225 431-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.3 5.9E-14 1.3E-18 115.5 -3.2 109 116-228 182-291 (565)
9 KOG0444 Cytoskeletal regulator 99.3 2.1E-13 4.6E-18 118.0 -2.3 114 113-228 241-355 (1255)
10 PLN03210 Resistant to P. syrin 99.3 2.1E-11 4.6E-16 116.6 9.5 61 113-174 653-714 (1153)
11 KOG0444 Cytoskeletal regulator 99.2 1.6E-12 3.5E-17 112.7 -1.9 91 133-225 214-304 (1255)
12 PF01582 TIR: TIR domain; Int 99.2 5.3E-12 1.2E-16 92.5 1.0 81 1-81 41-140 (141)
13 PF14580 LRR_9: Leucine-rich r 99.1 3.1E-11 6.6E-16 91.1 3.5 79 116-197 41-122 (175)
14 PLN03150 hypothetical protein; 99.1 2.1E-10 4.5E-15 103.2 9.0 107 118-224 419-527 (623)
15 KOG4194 Membrane glycoprotein 99.1 1.4E-11 3.1E-16 105.9 -0.0 113 113-227 313-431 (873)
16 KOG4194 Membrane glycoprotein 99.1 1.2E-11 2.5E-16 106.4 -2.2 114 113-228 289-408 (873)
17 KOG0532 Leucine-rich repeat (L 99.0 3.6E-11 7.8E-16 103.1 -2.5 111 113-228 140-250 (722)
18 KOG0532 Leucine-rich repeat (L 98.9 1.1E-10 2.5E-15 100.1 -0.2 111 113-228 117-227 (722)
19 PRK15370 E3 ubiquitin-protein 98.9 2.1E-09 4.5E-14 98.0 7.4 99 117-226 220-318 (754)
20 KOG1259 Nischarin, modulator o 98.9 2.2E-10 4.8E-15 91.7 0.2 108 116-228 306-415 (490)
21 PRK15370 E3 ubiquitin-protein 98.9 3.5E-09 7.5E-14 96.6 7.9 111 101-228 189-299 (754)
22 PLN03150 hypothetical protein; 98.9 3.4E-09 7.3E-14 95.5 6.9 86 143-228 420-507 (623)
23 PF14580 LRR_9: Leucine-rich r 98.9 2.8E-09 6E-14 80.4 4.3 109 113-226 15-127 (175)
24 KOG4658 Apoptotic ATPase [Sign 98.8 1.4E-09 3E-14 100.6 3.1 109 113-221 567-677 (889)
25 KOG0618 Serine/threonine phosp 98.8 1.1E-09 2.4E-14 98.6 -0.2 105 115-222 43-147 (1081)
26 PRK15387 E3 ubiquitin-protein 98.7 1.5E-08 3.3E-13 92.3 6.1 37 189-226 423-459 (788)
27 PF13855 LRR_8: Leucine rich r 98.7 1.5E-08 3.2E-13 63.1 4.2 57 117-174 1-59 (61)
28 KOG0618 Serine/threonine phosp 98.7 1.3E-09 2.8E-14 98.2 -1.1 110 117-228 21-130 (1081)
29 KOG4658 Apoptotic ATPase [Sign 98.7 6.6E-09 1.4E-13 96.2 3.0 109 114-223 542-653 (889)
30 PRK15387 E3 ubiquitin-protein 98.7 3.7E-08 7.9E-13 89.9 7.4 100 117-228 242-358 (788)
31 KOG1259 Nischarin, modulator o 98.7 4.4E-09 9.5E-14 84.4 0.3 110 113-227 280-389 (490)
32 COG4886 Leucine-rich repeat (L 98.6 1.4E-08 3E-13 86.8 2.3 111 114-227 160-270 (394)
33 cd00116 LRR_RI Leucine-rich re 98.6 2.7E-08 5.8E-13 82.2 3.9 110 117-226 108-235 (319)
34 COG4886 Leucine-rich repeat (L 98.6 2E-08 4.3E-13 85.8 2.8 108 113-223 112-220 (394)
35 cd00116 LRR_RI Leucine-rich re 98.6 4.1E-08 8.9E-13 81.1 4.2 112 113-225 132-263 (319)
36 KOG4237 Extracellular matrix p 98.6 3E-09 6.6E-14 87.9 -2.5 108 118-227 68-179 (498)
37 PF13855 LRR_8: Leucine rich r 98.6 6.5E-08 1.4E-12 60.1 3.9 56 166-223 3-60 (61)
38 KOG4579 Leucine-rich repeat (L 98.5 7.9E-09 1.7E-13 73.8 -1.3 91 113-206 49-140 (177)
39 smart00255 TIR Toll - interleu 98.5 3.9E-07 8.4E-12 66.3 7.4 75 7-82 47-136 (140)
40 PF12799 LRR_4: Leucine Rich r 98.5 1.2E-07 2.5E-12 54.8 2.7 38 189-227 2-39 (44)
41 PRK15386 type III secretion pr 98.4 3.1E-07 6.8E-12 77.7 5.7 93 118-222 73-187 (426)
42 KOG3207 Beta-tubulin folding c 98.4 4.3E-08 9.3E-13 82.1 0.4 126 99-226 145-315 (505)
43 KOG1859 Leucine-rich repeat pr 98.4 8.7E-09 1.9E-13 91.1 -5.0 117 99-225 173-292 (1096)
44 PF12799 LRR_4: Leucine Rich r 98.4 5.1E-07 1.1E-11 52.1 4.0 33 142-174 2-34 (44)
45 PRK15386 type III secretion pr 98.2 2.1E-06 4.6E-11 72.7 5.1 98 117-224 94-218 (426)
46 KOG0531 Protein phosphatase 1, 98.2 7.1E-07 1.5E-11 76.9 2.2 109 113-226 91-200 (414)
47 KOG4237 Extracellular matrix p 98.2 3.6E-07 7.7E-12 75.9 -0.3 97 129-227 57-155 (498)
48 KOG0531 Protein phosphatase 1, 98.0 1E-06 2.3E-11 75.8 0.4 108 115-227 70-177 (414)
49 KOG3207 Beta-tubulin folding c 98.0 4.4E-06 9.6E-11 70.3 3.4 109 115-225 220-339 (505)
50 KOG3665 ZYG-1-like serine/thre 98.0 5E-06 1.1E-10 75.6 3.8 109 114-225 145-263 (699)
51 KOG4579 Leucine-rich repeat (L 98.0 8.1E-07 1.7E-11 63.7 -1.1 106 120-228 30-139 (177)
52 KOG1859 Leucine-rich repeat pr 98.0 5.1E-07 1.1E-11 80.2 -3.2 104 117-226 164-268 (1096)
53 KOG1909 Ran GTPase-activating 97.7 9.9E-06 2.1E-10 66.4 0.9 41 184-225 209-254 (382)
54 KOG3665 ZYG-1-like serine/thre 97.7 2.5E-05 5.3E-10 71.2 2.7 108 115-225 120-233 (699)
55 KOG2120 SCF ubiquitin ligase, 97.5 8.9E-06 1.9E-10 65.6 -1.8 108 113-222 256-373 (419)
56 KOG1644 U2-associated snRNP A' 97.5 0.00015 3.3E-09 55.3 4.7 101 117-221 42-149 (233)
57 KOG1644 U2-associated snRNP A' 97.5 0.00016 3.4E-09 55.3 4.4 83 113-197 60-149 (233)
58 KOG2982 Uncharacterized conser 97.4 8.9E-05 1.9E-09 59.9 2.5 56 117-173 71-130 (418)
59 KOG2120 SCF ubiquitin ligase, 97.4 1.7E-05 3.6E-10 64.0 -1.8 109 113-223 230-349 (419)
60 KOG2739 Leucine-rich acidic nu 97.1 0.00055 1.2E-08 54.2 3.3 100 116-220 42-151 (260)
61 KOG1909 Ran GTPase-activating 97.0 0.00062 1.3E-08 56.1 3.2 112 113-224 181-310 (382)
62 PF13676 TIR_2: TIR domain; PD 96.9 0.00014 3.1E-09 49.8 -0.8 41 1-41 36-76 (102)
63 PF00560 LRR_1: Leucine Rich R 96.8 0.00069 1.5E-08 32.7 1.4 18 143-160 2-19 (22)
64 PF13504 LRR_7: Leucine rich r 96.7 0.00057 1.2E-08 30.8 0.6 16 213-228 2-17 (17)
65 KOG2123 Uncharacterized conser 96.5 0.00028 6.1E-09 56.6 -2.1 80 113-194 37-123 (388)
66 KOG2982 Uncharacterized conser 96.5 0.0031 6.7E-08 51.3 3.5 62 113-174 93-156 (418)
67 KOG2739 Leucine-rich acidic nu 96.4 0.0023 4.9E-08 50.8 2.3 85 113-197 61-152 (260)
68 KOG2123 Uncharacterized conser 96.2 0.00032 7E-09 56.3 -3.1 99 116-218 18-123 (388)
69 PF00560 LRR_1: Leucine Rich R 96.1 0.0024 5.3E-08 30.7 0.8 22 118-140 1-22 (22)
70 PF13306 LRR_5: Leucine rich r 95.7 0.054 1.2E-06 38.2 6.8 101 113-221 8-112 (129)
71 PF13504 LRR_7: Leucine rich r 95.4 0.012 2.6E-07 26.3 1.5 9 119-127 3-11 (17)
72 smart00369 LRR_TYP Leucine-ric 95.3 0.012 2.6E-07 29.4 1.5 18 211-228 1-18 (26)
73 smart00370 LRR Leucine-rich re 95.3 0.012 2.6E-07 29.4 1.5 18 211-228 1-18 (26)
74 KOG3864 Uncharacterized conser 95.2 0.0058 1.3E-07 46.9 0.3 79 119-197 103-185 (221)
75 KOG1947 Leucine rich repeat pr 95.1 0.0091 2E-07 52.0 1.3 35 116-150 187-223 (482)
76 KOG1947 Leucine rich repeat pr 94.0 0.035 7.5E-07 48.3 2.3 108 113-220 210-329 (482)
77 smart00369 LRR_TYP Leucine-ric 93.5 0.06 1.3E-06 26.8 1.7 19 141-159 2-20 (26)
78 smart00370 LRR Leucine-rich re 93.5 0.06 1.3E-06 26.8 1.7 19 141-159 2-20 (26)
79 COG5238 RNA1 Ran GTPase-activa 93.4 0.12 2.7E-06 41.8 4.2 15 139-153 90-104 (388)
80 KOG0473 Leucine-rich repeat pr 93.3 0.0018 3.9E-08 50.9 -6.2 61 113-174 61-121 (326)
81 KOG4341 F-box protein containi 93.2 0.072 1.6E-06 45.3 2.7 110 113-222 316-436 (483)
82 KOG0473 Leucine-rich repeat pr 93.1 0.0015 3.3E-08 51.2 -6.7 85 113-199 38-122 (326)
83 COG5238 RNA1 Ran GTPase-activa 93.0 0.097 2.1E-06 42.4 3.0 113 113-226 26-171 (388)
84 PF13306 LRR_5: Leucine rich r 92.3 0.66 1.4E-05 32.5 6.4 94 113-214 31-128 (129)
85 smart00364 LRR_BAC Leucine-ric 92.1 0.085 1.8E-06 26.4 1.1 17 212-228 2-18 (26)
86 KOG3864 Uncharacterized conser 90.2 0.046 9.9E-07 42.1 -1.4 78 143-220 103-184 (221)
87 KOG4341 F-box protein containi 89.7 0.16 3.4E-06 43.4 1.1 120 99-218 319-458 (483)
88 smart00365 LRR_SD22 Leucine-ri 89.0 0.23 4.9E-06 24.9 1.0 17 211-227 1-17 (26)
89 PF08937 DUF1863: MTH538 TIR-l 86.8 0.64 1.4E-05 33.2 2.6 42 3-44 59-100 (130)
90 smart00367 LRR_CC Leucine-rich 83.7 0.89 1.9E-05 22.4 1.6 15 188-202 2-16 (26)
91 PF13516 LRR_6: Leucine Rich r 81.9 0.58 1.3E-05 22.5 0.5 14 212-225 2-15 (24)
92 smart00368 LRR_RI Leucine rich 78.0 1.4 3.1E-05 22.2 1.2 14 212-225 2-15 (28)
93 KOG4308 LRR-containing protein 60.8 0.35 7.7E-06 42.6 -5.5 37 188-224 262-302 (478)
94 KOG3763 mRNA export factor TAP 55.1 6.3 0.00014 35.1 1.2 65 139-203 216-285 (585)
95 KOG3763 mRNA export factor TAP 41.2 16 0.00034 32.8 1.5 66 114-180 215-286 (585)
96 KOG3678 SARM protein (with ste 40.7 49 0.0011 29.3 4.3 40 5-44 655-702 (832)
97 cd03028 GRX_PICOT_like Glutare 31.9 29 0.00063 22.7 1.4 21 11-33 4-24 (90)
98 cd00120 MADS MADS: MCM1, Agamo 31.5 44 0.00096 20.2 2.0 19 14-32 39-57 (59)
99 PF12344 UvrB: Ultra-violet re 30.8 37 0.00081 19.3 1.4 15 1-15 3-17 (44)
100 PF00319 SRF-TF: SRF-type tran 29.4 40 0.00086 19.8 1.5 19 14-32 32-50 (51)
101 PF13271 DUF4062: Domain of un 28.4 69 0.0015 20.6 2.7 23 6-28 44-66 (83)
102 PF10137 TIR-like: Predicted n 23.2 79 0.0017 22.4 2.4 24 1-24 37-60 (125)
103 PF11214 Med2: Mediator comple 23.0 38 0.00082 23.2 0.6 16 26-41 68-83 (105)
104 KOG4231 Intracellular membrane 22.2 20 0.00042 31.9 -1.0 55 117-172 104-158 (763)
105 cd00265 MADS_MEF2_like MEF2 (m 22.0 61 0.0013 20.7 1.5 19 14-32 39-57 (77)
106 TIGR00864 PCC polycystin catio 20.7 68 0.0015 34.7 2.1 30 123-153 1-31 (2740)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=7.1e-30 Score=241.61 Aligned_cols=80 Identities=36% Similarity=0.580 Sum_probs=74.4
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC--------------chhhhhccccHHHHHHHHHHhh
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN--------------TSLVRKHIGSFQEAIVNHEEVL 66 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~--------------ps~vr~q~g~f~~af~~~~~~~ 66 (228)
|+.|++++++|||+|||||||||+|||+|+||||||++|++|++ |++||+|+|.||+||.++++..
T Consensus 52 g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~ 131 (1153)
T PLN03210 52 SQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK 131 (1153)
T ss_pred CCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc
Confidence 88999999999999999999999999999999999999999987 9999999999999999987643
Q ss_pred cchhhhHHhHHHHHhh
Q 038390 67 KGEYRKGAKMERRFAR 82 (228)
Q Consensus 67 ~~~~~kl~~W~~al~~ 82 (228)
..+++++|+.|+++
T Consensus 132 --~~~~~~~w~~al~~ 145 (1153)
T PLN03210 132 --TEDEKIQWKQALTD 145 (1153)
T ss_pred --chhHHHHHHHHHHH
Confidence 34589999999986
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=99.84 E-value=3.1e-21 Score=143.62 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=64.8
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC----------chhhhhc-cccHHHHHHHHHHhhcch
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN----------TSLVRKH-IGSFQEAIVNHEEVLKGE 69 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~----------ps~vr~q-~g~f~~af~~~~~~~~~~ 69 (228)
|+.|++++.+|||+||++|||||++||+|.|||+||++|++|++ |++||+| +|. ..
T Consensus 67 G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~-------------~~ 133 (187)
T PLN03194 67 GDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKRVIPIFCDVKPSQLRVVDNGT-------------CP 133 (187)
T ss_pred CCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcCCEEEEEEecCCHHHhhccccCC-------------CC
Confidence 88999999999999999999999999999999999999999987 9999997 443 13
Q ss_pred hhhHHhHHHHHhhcccc
Q 038390 70 YRKGAKMERRFARGTEV 86 (228)
Q Consensus 70 ~~kl~~W~~al~~~~~~ 86 (228)
.+++++|+.||.+..+.
T Consensus 134 ~e~v~~Wr~AL~~va~l 150 (187)
T PLN03194 134 DEEIRRFNWALEEAKYT 150 (187)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 46899999999985533
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=2.7e-16 Score=115.78 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=86.9
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCC-----
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCK----- 175 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~----- 175 (228)
.++.+++. +..|.+|++|++++| +++.+|..+..++.|+.|++.-|++..+|..+|.++-|+.||+.+|+
T Consensus 44 Kl~~vppn----ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~ 118 (264)
T KOG0617|consen 44 KLTVVPPN----IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENS 118 (264)
T ss_pred ceeecCCc----HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccccccc
Confidence 34455554 666666666666655 56666666666666666666666666666666666666666665544
Q ss_pred -------------------CCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 176 -------------------NIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 176 -------------------~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
...-+|..++++++|+.|.+++ +.+-++|..+|.++.|++|.+++|.++-+|
T Consensus 119 lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 119 LPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred CCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 2455788889999999999998 778889999999999999999999888665
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=2e-15 Score=111.24 Aligned_cols=122 Identities=25% Similarity=0.241 Sum_probs=100.0
Q ss_pred cccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCc
Q 038390 100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIEC 179 (228)
Q Consensus 100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~ 179 (228)
.+..+++. +..+.+++.|.||+| ++..+|+.+..+.+|+.|++.+|.++++|.++..+++|+.|++.-| .+..
T Consensus 21 Ssf~~~~g-----Lf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~ 93 (264)
T KOG0617|consen 21 SSFEELPG-----LFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNI 93 (264)
T ss_pred ccHhhccc-----ccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhc
Confidence 45556666 778888999999999 8999999999999999999999999999999999999999999874 6788
Q ss_pred cCcccCCCCCCCEEeccCCCCC------------------------cccchhhhcCccccceeccccCCCCCC
Q 038390 180 LPNFISALKFPSTLNFSGLLKF------------------------RLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 180 lp~~~~~l~~L~~L~l~~c~~l------------------------~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|..||.++.|+.||+..++.- .-+|..+|.+++|+.|.+.+|.+-++|
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc
Confidence 9999999999999999875422 235555666666666666666665554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.43 E-value=4e-13 Score=126.65 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=51.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
++.+++|++|++++|...+.+|..++++++|++|++++|.+. .+|..++.+++|+.|++++|.....+|..++++++|+
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 334444444444444333344444444444444444444333 2344444444444444444433334444444445555
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
+|++++|.....+|..++.+++|+.|++++|.++
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 5555443333344444555555555555555443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.40 E-value=6e-13 Score=125.48 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=59.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
++++++|++|++++|...+.+|+.++.+++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..++++++|+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 445555555555555444445555555555555555555444 3455555555555555555544444555555555555
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
+|++++|.....+|..++.+++|+.|++++|.+.
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 5555554333345555555555555555555544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.39 E-value=3e-13 Score=111.44 Aligned_cols=110 Identities=23% Similarity=0.282 Sum_probs=99.7
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcc-cCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNF-ISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~ 191 (228)
++.+++|..|+|++| .+-.+|.+++.+..|+.||++.|++..+|..+..+..++.+-.++ +.++.++.+ ++++.+|.
T Consensus 431 l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcc
Confidence 889999999999987 899999999999999999999999999999888777777776665 467888665 99999999
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
+||+.+ +.+..+|+.+|+|++|++|.+.+|+|+
T Consensus 509 tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 999998 889999999999999999999999998
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=5.9e-14 Score=115.54 Aligned_cols=109 Identities=26% Similarity=0.266 Sum_probs=62.5
Q ss_pred cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccC-CCCCCCEEe
Q 038390 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFIS-ALKFPSTLN 194 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~-~l~~L~~L~ 194 (228)
++.|+.||...| .++.+|+.++.|.+|.-|++..|.+..+| +|+.+..|..|.+..| .+..+|...+ ++.++.+||
T Consensus 182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeee
Confidence 455555555544 45555555555555555555555555555 4454555555554442 3444555443 566666666
Q ss_pred ccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 195 FSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 195 l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+++ ++++++|+.+..+.+|..||+++|.|+.+|
T Consensus 259 LRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 259 LRD-NKLKEVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred ccc-cccccCchHHHHhhhhhhhcccCCccccCC
Confidence 666 566666666666666666666666666655
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.28 E-value=2.1e-13 Score=118.04 Aligned_cols=114 Identities=24% Similarity=0.255 Sum_probs=77.5
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCC-CCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKN-IECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~-~~~lp~~~~~l~~L~ 191 (228)
+..+++|+.|+||+| .++.+.-..+...+|+.|+++.|.+..+|..+..|+.|+.|.+.+|+. ...+|+.||+|..|+
T Consensus 241 ly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred HhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 666667777777766 555555555556666666666666666666666666666666665432 345677777777777
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
.+...+ |.+.-+|++++.+..|+.|.|++|.+..+|
T Consensus 320 vf~aan-N~LElVPEglcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 320 VFHAAN-NKLELVPEGLCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred HHHhhc-cccccCchhhhhhHHHHHhcccccceeech
Confidence 777766 667777777777777777777777776655
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.25 E-value=2.1e-11 Score=116.55 Aligned_cols=61 Identities=31% Similarity=0.483 Sum_probs=33.0
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCC-cccccchhcCCCCCCcEEeccCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT-DIKGLLLSIVLLSGIVQLNLKGC 174 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~ 174 (228)
++.+++|++|++++|..+..+|..++.+++|+.|++++| .++.+|..+ ++++|+.|++++|
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 445555666666666555566666666666666666554 444455433 3444444444444
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.18 E-value=1.6e-12 Score=112.68 Aligned_cols=91 Identities=20% Similarity=0.244 Sum_probs=51.4
Q ss_pred cchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCc
Q 038390 133 FPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIE 212 (228)
Q Consensus 133 ~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~ 212 (228)
+|..+..|.+|..+|++.|.+..+|+.+..+.+|+.|+|++| .++.+....+...+|++|+++. |.++.+|+.+..++
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLT 291 (1255)
T ss_pred CCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhH
Confidence 444555555555555555555555555555555555555553 3444544444455555555555 55666666666666
Q ss_pred cccceeccccCCC
Q 038390 213 HLLALRLLGTAIR 225 (228)
Q Consensus 213 ~L~~L~l~~n~l~ 225 (228)
.|+.|++.+|.++
T Consensus 292 kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 292 KLTKLYANNNKLT 304 (1255)
T ss_pred HHHHHHhccCccc
Confidence 6666666666543
No 12
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.18 E-value=5.3e-12 Score=92.50 Aligned_cols=81 Identities=27% Similarity=0.249 Sum_probs=67.6
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC----------------chhhh-hccccHHHHHHHHH
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN----------------TSLVR-KHIGSFQEAIVNHE 63 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~----------------ps~vr-~q~g~f~~af~~~~ 63 (228)
|..+..++.++|+.||.+|+|||++|+.|.||++|+..+++|.. +++++ .+.+.|...|....
T Consensus 41 G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~ 120 (141)
T PF01582_consen 41 GESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYL 120 (141)
T ss_dssp SSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCE
T ss_pred cccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhhe
Confidence 66788899999999999999999999999999999999999854 78888 78899988887765
Q ss_pred Hhhcch--hhhHHhHHHHHh
Q 038390 64 EVLKGE--YRKGAKMERRFA 81 (228)
Q Consensus 64 ~~~~~~--~~kl~~W~~al~ 81 (228)
.-.... .++...|+.+..
T Consensus 121 ~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 121 RWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp ETSSSGGGGGHHHHHHHHHH
T ss_pred eCCCCCCccHHHHHHHHHhc
Confidence 544433 456788987653
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=3.1e-11 Score=91.05 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=20.2
Q ss_pred cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhc-CCCCCCcEEeccCCCCCCccC--cccCCCCCCCE
Q 038390 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSI-VLLSGIVQLNLKGCKNIECLP--NFISALKFPST 192 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~ 192 (228)
+.+|+.|++++| .++.++. +..++.|+.|++++|.|+.+++.+ ..+++|+.|++++|+ +..+- ..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS---S--TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCC-CCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcce
Confidence 344455555544 3444332 334445555555555554443332 234445555554432 22221 12334444555
Q ss_pred EeccC
Q 038390 193 LNFSG 197 (228)
Q Consensus 193 L~l~~ 197 (228)
|++.+
T Consensus 118 L~L~~ 122 (175)
T PF14580_consen 118 LSLEG 122 (175)
T ss_dssp EE-TT
T ss_pred eeccC
Confidence 55544
No 14
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=2.1e-10 Score=103.25 Aligned_cols=107 Identities=18% Similarity=0.176 Sum_probs=91.3
Q ss_pred CccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390 118 SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS 196 (228)
Q Consensus 118 ~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 196 (228)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999998666788999999999999999999886 788889999999999999988777899999999999999999
Q ss_pred CCCCCcccchhhhcC-ccccceeccccCC
Q 038390 197 GLLKFRLFPEIMGCI-EHLLALRLLGTAI 224 (228)
Q Consensus 197 ~c~~l~~lp~~~~~l-~~L~~L~l~~n~l 224 (228)
+|.....+|..++.+ .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 976666899888764 4667888888753
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.09 E-value=1.4e-11 Score=105.95 Aligned_cols=113 Identities=23% Similarity=0.284 Sum_probs=73.5
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccC---cccCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLP---NFISAL 187 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp---~~~~~l 187 (228)
+...++|++|+|+.| .+..++ ..+..+..|++|+|+.|++..+.+ .+..+.+|+.|||++|.....+- ..+..+
T Consensus 313 WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 444455555555555 344432 344455555555555555555533 35566777777777765443332 236678
Q ss_pred CCCCEEeccCCCCCcccc-hhhhcCccccceeccccCCCCC
Q 038390 188 KFPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 188 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l 227 (228)
++|+.|++.| |+++++| ..+..+++|++|||.+|.|.+|
T Consensus 392 ~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 392 PSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred hhhhheeecC-ceeeecchhhhccCcccceecCCCCcceee
Confidence 9999999999 7889998 4788999999999999988653
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.05 E-value=1.2e-11 Score=106.44 Aligned_cols=114 Identities=23% Similarity=0.229 Sum_probs=89.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L 190 (228)
+.+|+.|+.|+||+|..-..-++.+...+.|++|+|++|+|.++++ ++..|..|+.|+|++|. +..+-+ .|..+++|
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL 367 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSL 367 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhh
Confidence 7788899999999884333347788888899999999999998854 67888899999999864 455533 46788999
Q ss_pred CEEeccCCCCCc-cc---chhhhcCccccceeccccCCCCCC
Q 038390 191 STLNFSGLLKFR-LF---PEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 191 ~~L~l~~c~~l~-~l---p~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+.|||++ |.+. -+ ...+..|++|+.|++.+|+|..||
T Consensus 368 ~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 368 HKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred hhhcCcC-CeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 9999998 5443 22 234677999999999999998876
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=3.6e-11 Score=103.06 Aligned_cols=111 Identities=28% Similarity=0.390 Sum_probs=94.2
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
++.|+ |+.|-+++| +++.+|+.++.+..|..||.+.|.+..+|..++.+.+|+.|.+..| .+..+|..++.|+ |..
T Consensus 140 lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~Lp-Li~ 215 (722)
T KOG0532|consen 140 LCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSLP-LIR 215 (722)
T ss_pred hhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCCc-eee
Confidence 44443 788888876 7888898888888899999999999999999999999999999885 4677888888554 899
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
||++. |++..+|-.|..|+.|++|-|.+|.+++-|
T Consensus 216 lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 216 LDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred eeccc-CceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 99986 899999999999999999999999998754
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=1.1e-10 Score=100.06 Aligned_cols=111 Identities=23% Similarity=0.332 Sum_probs=98.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+.+|..|+.|||+.| .+..+|..+..++ |+.|.+++|+++.+|..++.+..|..|+.+.| .+..+|..++.+.+|+.
T Consensus 117 i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHH
Confidence 888999999999998 7888898888775 89999999999999999998889999999986 57889999999999999
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|.++. +.+..+|+.++.|+ |..||+++|++..||
T Consensus 194 l~vrR-n~l~~lp~El~~Lp-Li~lDfScNkis~iP 227 (722)
T KOG0532|consen 194 LNVRR-NHLEDLPEELCSLP-LIRLDFSCNKISYLP 227 (722)
T ss_pred HHHhh-hhhhhCCHHHhCCc-eeeeecccCceeecc
Confidence 99998 77889998888665 899999999999887
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.94 E-value=2.1e-09 Score=97.99 Aligned_cols=99 Identities=19% Similarity=0.265 Sum_probs=56.4
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS 196 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 196 (228)
++|++|++++| .+..+|..+. .+|+.|++++|.+..+|..+. .+|+.|++++| .++.+|..+. ++|+.|+++
T Consensus 220 ~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 220 GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVY 291 (754)
T ss_pred cCCCEEECCCC-ccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECC
Confidence 46667777766 4566665443 356667777776666665543 46777777654 4556665543 467777777
Q ss_pred CCCCCcccchhhhcCccccceeccccCCCC
Q 038390 197 GLLKFRLFPEIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 197 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 226 (228)
+ +.++.+|..+. ++|+.|++++|.++.
T Consensus 292 ~-N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 292 D-NSIRTLPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred C-CccccCcccch--hhHHHHHhcCCcccc
Confidence 6 45555554332 234444444444443
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=2.2e-10 Score=91.69 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=64.3
Q ss_pred cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNF 195 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 195 (228)
+|.++.|++|+| .+..+.. +..+.+|..|||++|.+.++..+-..|-|++.|.|.+| .+.++ +.++++.+|..||+
T Consensus 306 ~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhh-hhhHhhhhheeccc
Confidence 344444444444 2222222 34444444445544444444333333444444444442 23333 34677889999999
Q ss_pred cCCCCCcccc--hhhhcCccccceeccccCCCCCC
Q 038390 196 SGLLKFRLFP--EIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 196 ~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++ |++..+- ..+|+++.|+++.|.+|.+..+|
T Consensus 382 ~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 382 SS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cc-cchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99 6777765 46899999999999999998765
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.91 E-value=3.5e-09 Score=96.56 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=90.4
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCcc
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECL 180 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l 180 (228)
.++.+|.. + .++|+.|++++| .+..+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|. +..+
T Consensus 189 ~LtsLP~~----I--p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~L 256 (754)
T PRK15370 189 GLTTIPAC----I--PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITEL 256 (754)
T ss_pred CcCcCCcc----c--ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcC
Confidence 45556543 3 257999999998 7888988665 589999999999999997664 479999999975 6788
Q ss_pred CcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 181 PNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 181 p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|..+. .+|+.|++++ +.++.+|+.+. ++|+.|++++|+|+.+|
T Consensus 257 P~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 257 PERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDNSIRTLP 299 (754)
T ss_pred ChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCCccccCc
Confidence 87664 5899999997 78889998664 58999999999999876
No 22
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=3.4e-09 Score=95.47 Aligned_cols=86 Identities=22% Similarity=0.263 Sum_probs=77.7
Q ss_pred cceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccc
Q 038390 143 LRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLG 221 (228)
Q Consensus 143 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 221 (228)
+..|+|++|.+. .+|..++.+++|+.|+|++|...+.+|..++.+++|+.|++++|.....+|+.++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 778999999887 6788999999999999999877778999999999999999999666568999999999999999999
Q ss_pred cCCC-CCC
Q 038390 222 TAIR-GLP 228 (228)
Q Consensus 222 n~l~-~lP 228 (228)
|+++ .+|
T Consensus 500 N~l~g~iP 507 (623)
T PLN03150 500 NSLSGRVP 507 (623)
T ss_pred CcccccCC
Confidence 9998 555
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=2.8e-09 Score=80.45 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=43.5
Q ss_pred ccccCCccEEEccCCCCCcccchhhc-CCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCccc-CCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVG-NMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFI-SALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L 190 (228)
+.+..++++|+|++| .+..+.. ++ .+.+|+.|++++|.|+.++ .+..++.|+.|++++| .+++++..+ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n-~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGN-QISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccc-ccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence 455667899999999 6766654 54 5789999999999999886 5788999999999996 567776544 468999
Q ss_pred CEEeccCCCCCcccc--hhhhcCccccceeccccCCCC
Q 038390 191 STLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~ 226 (228)
++|++++ |.+..+- ..++.+++|+.|++.+|.+++
T Consensus 91 ~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 91 QELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp -EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 9999998 7777654 457789999999999998864
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=1.4e-09 Score=100.59 Aligned_cols=109 Identities=27% Similarity=0.312 Sum_probs=79.2
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..++.|++|||++|..+..+|+.++++-+|++|+++++.++.+|.++++|+.|.+|++..+..+..+|.....+.+|++
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 55688888888888888888888888888888888888888888888888888888888887666666665566888888
Q ss_pred EeccCCC-CCc-ccchhhhcCccccceeccc
Q 038390 193 LNFSGLL-KFR-LFPEIMGCIEHLLALRLLG 221 (228)
Q Consensus 193 L~l~~c~-~l~-~lp~~~~~l~~L~~L~l~~ 221 (228)
|.+..-. ..+ ..-..+.++++|+.+....
T Consensus 647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred EEeeccccccchhhHHhhhcccchhhheeec
Confidence 8876521 111 1223345555665555543
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.77 E-value=1.1e-09 Score=98.61 Aligned_cols=105 Identities=27% Similarity=0.272 Sum_probs=91.8
Q ss_pred ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEe
Q 038390 115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLN 194 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 194 (228)
+.-+|+.||+++| .+..+|..+..+.+|+.|+++.|.|..+|.++.++.+|++|+|.+ +.+..+|.++..+++|+.|+
T Consensus 43 ~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLD 120 (1081)
T ss_pred heeeeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccc
Confidence 3345899999987 788889888889999999999999999998899999999999986 46888999999999999999
Q ss_pred ccCCCCCcccchhhhcCccccceecccc
Q 038390 195 FSGLLKFRLFPEIMGCIEHLLALRLLGT 222 (228)
Q Consensus 195 l~~c~~l~~lp~~~~~l~~L~~L~l~~n 222 (228)
+++ |.+..+|..+..+..+..+..++|
T Consensus 121 lS~-N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 121 LSF-NHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred cch-hccCCCchhHHhhhHHHHHhhhcc
Confidence 999 788899998888888888888888
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.74 E-value=1.5e-08 Score=92.29 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=28.3
Q ss_pred CCCEEeccCCCCCcccchhhhcCccccceeccccCCCC
Q 038390 189 FPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 226 (228)
+|+.|++++ |.++.+|+.++.+++|+.|+|++|.|++
T Consensus 423 ~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 423 GLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCc
Confidence 456666666 5667788888888888889998888873
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=1.5e-08 Score=63.09 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=37.0
Q ss_pred CCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCC
Q 038390 117 KSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGC 174 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~ 174 (228)
++|++|++++| .+..+| +.+..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35667777776 555655 356667777777777777766653 4566666666666665
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.73 E-value=1.3e-09 Score=98.25 Aligned_cols=110 Identities=25% Similarity=0.295 Sum_probs=70.0
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS 196 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 196 (228)
..++.|+++.|..+..--+.+.+.-.|+.|++++|.+...|..+-.+.+|+.|+++. +.+...|.+++++.+|++|.|.
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheec
Confidence 346666666663333222334444446777777777776666666666777777765 3566666666677777777776
Q ss_pred CCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 197 GLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 197 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+ +.+..+|.++..+++|+.|++++|.+..+|
T Consensus 100 ~-n~l~~lP~~~~~lknl~~LdlS~N~f~~~P 130 (1081)
T KOG0618|consen 100 N-NRLQSLPASISELKNLQYLDLSFNHFGPIP 130 (1081)
T ss_pred c-chhhcCchhHHhhhcccccccchhccCCCc
Confidence 5 666777777777777777777777766555
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.71 E-value=6.6e-09 Score=96.20 Aligned_cols=109 Identities=28% Similarity=0.279 Sum_probs=91.9
Q ss_pred cccCCccEEEccCCCC-Cccc-chhhcCCCCcceEEccCC-cccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390 114 IFMKSPKTLILSGCSK-LKKF-PEIVGNMKFLRQLLLDGT-DIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP 190 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~-l~~~-p~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 190 (228)
...+.|++|-+.+|.. +..+ +++|..|+.|+.|||++| .+.++|.+|+.|.+|++|++++ ..+..+|.++++|++|
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhh
Confidence 3445788888888752 4444 456888999999999988 6789999999999999999998 4688999999999999
Q ss_pred CEEeccCCCCCcccchhhhcCccccceeccccC
Q 038390 191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTA 223 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~ 223 (228)
.+|++..+..+..+|.....|++|++|.+....
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc
Confidence 999999978788888888889999999887654
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.70 E-value=3.7e-08 Score=89.85 Aligned_cols=100 Identities=22% Similarity=0.265 Sum_probs=60.2
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS 196 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 196 (228)
++|++|++++| .+..+|.. .++|+.|++++|.+..+|.. ..+|+.|++++| .+..+|.. +++|+.|+++
T Consensus 242 ~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS 310 (788)
T PRK15387 242 PELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGN-QLTSLPVL---PPGLQELSVS 310 (788)
T ss_pred CCCcEEEecCC-ccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCC-cccccccc---ccccceeECC
Confidence 45566666655 45555532 23555566666655555532 245667777775 45666652 4678999998
Q ss_pred CCCCCcccchhhhc-------------C----ccccceeccccCCCCCC
Q 038390 197 GLLKFRLFPEIMGC-------------I----EHLLALRLLGTAIRGLP 228 (228)
Q Consensus 197 ~c~~l~~lp~~~~~-------------l----~~L~~L~l~~n~l~~lP 228 (228)
+ |.+..+|..... + .+|+.|++++|+|+.+|
T Consensus 311 ~-N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 311 D-NQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLP 358 (788)
T ss_pred C-CccccCCCCcccccccccccCccccccccccccceEecCCCccCCCC
Confidence 8 567766642211 1 26777888888877776
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=4.4e-09 Score=84.38 Aligned_cols=110 Identities=22% Similarity=0.184 Sum_probs=86.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+-..+.|+++|||+| .++.+.+.+.-++.++.|+++.|.+..+.. +..|.+|+.|||++|. +..+-..=.++-+.++
T Consensus 280 ~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEee
Confidence 344567889999998 788888888888999999999999987764 7888999999999864 5555443345667888
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|.+++ |.+..+. .++.+=+|..||+++|+|.++
T Consensus 357 L~La~-N~iE~LS-GL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 357 LKLAQ-NKIETLS-GLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred eehhh-hhHhhhh-hhHhhhhheeccccccchhhH
Confidence 88988 6676664 567788999999999998753
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=1.4e-08 Score=86.79 Aligned_cols=111 Identities=32% Similarity=0.362 Sum_probs=48.5
Q ss_pred cccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEE
Q 038390 114 IFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTL 193 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 193 (228)
..++.|+.|++++| .+..+|...+.++.|+.|++++|.+..+|..+..+..|+.+.+++|. ....+..+.++.++..+
T Consensus 160 ~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 160 RNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 44444444444444 34444443334444444444444444444443333444444444431 11222222333333333
Q ss_pred eccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390 194 NFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 194 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
.+.+ +.+..+|..++.+++++.|++++|.++++
T Consensus 238 ~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 238 ELSN-NKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCC-ceeeeccchhccccccceecccccccccc
Confidence 3332 33333345555555566666666655544
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.62 E-value=2.7e-08 Score=82.23 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=80.1
Q ss_pred CCccEEEccCCCCC----cccchhhcCC-CCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCC----ccCc
Q 038390 117 KSPKTLILSGCSKL----KKFPEIVGNM-KFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIE----CLPN 182 (228)
Q Consensus 117 ~~L~~L~ls~~~~l----~~~p~~~~~l-~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~----~lp~ 182 (228)
++|+.|++++|... ..+...+..+ ++|+.|++++|.+. .++..+..+++|+.|++++|.... .++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 44999999998533 1234455666 88999999999877 345567778899999999875432 2444
Q ss_pred ccCCCCCCCEEeccCCCCC----cccchhhhcCccccceeccccCCCC
Q 038390 183 FISALKFPSTLNFSGLLKF----RLFPEIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 183 ~~~~l~~L~~L~l~~c~~l----~~lp~~~~~l~~L~~L~l~~n~l~~ 226 (228)
.+..+++|+.|++++|..- ..++..+..+++|++|++++|.+++
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 4566689999999996432 2345566778899999999998863
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=2e-08 Score=85.80 Aligned_cols=108 Identities=24% Similarity=0.353 Sum_probs=77.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCC-CcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMK-FLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..++.++.|++.++ .+..+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++| .+.++|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 445566777777776 6777777666664 777777777777777767777777777777775 4666776655777777
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTA 223 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~ 223 (228)
.|++++ +.+..+|..++.+..|+.+++++|.
T Consensus 190 ~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 190 NLDLSG-NKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred heeccC-CccccCchhhhhhhhhhhhhhcCCc
Confidence 777777 6777777766666667777777774
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.60 E-value=4.1e-08 Score=81.12 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=82.5
Q ss_pred cccc-CCccEEEccCCCCC----cccchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCC----C
Q 038390 113 LIFM-KSPKTLILSGCSKL----KKFPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNI----E 178 (228)
Q Consensus 113 ~~~l-~~L~~L~ls~~~~l----~~~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~----~ 178 (228)
+..+ ++|+.|++++|... ..++..+..++.|++|++++|.++ .++..+..+++|+.|++++|... .
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 5566 89999999999543 134566777889999999999887 34555667789999999998532 2
Q ss_pred ccCcccCCCCCCCEEeccCCCCCcc-cchhh-hc----CccccceeccccCCC
Q 038390 179 CLPNFISALKFPSTLNFSGLLKFRL-FPEIM-GC----IEHLLALRLLGTAIR 225 (228)
Q Consensus 179 ~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~~-~~----l~~L~~L~l~~n~l~ 225 (228)
.++..+..+++|++|++++|. ++. -+..+ .. .+.|+.|++++|.++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 244556788999999999964 442 11222 22 378999999999986
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.60 E-value=3e-09 Score=87.87 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=79.4
Q ss_pred CccEEEccCCCCCcccc-hhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCc-ccCCCCCCCEEe
Q 038390 118 SPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPN-FISALKFPSTLN 194 (228)
Q Consensus 118 ~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~ 194 (228)
....++|..| .++.+| ..|+.+++|+.|||+.|.|+.| |..+..+.+|..|.+.+++.++++|. .|++|.+|+.|.
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3566778777 677765 4678888888888888888877 66788888888888888777888876 467788888777
Q ss_pred ccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390 195 FSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 195 l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l 227 (228)
+.- +.+.-+ .+.+..|++|..|.+-+|.+..+
T Consensus 147 lNa-n~i~Cir~~al~dL~~l~lLslyDn~~q~i 179 (498)
T KOG4237|consen 147 LNA-NHINCIRQDALRDLPSLSLLSLYDNKIQSI 179 (498)
T ss_pred cCh-hhhcchhHHHHHHhhhcchhcccchhhhhh
Confidence 776 344433 35677777777777777776654
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.58 E-value=6.5e-08 Score=60.14 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=25.3
Q ss_pred CcEEeccCCCCCCccCc-ccCCCCCCCEEeccCCCCCcccc-hhhhcCccccceeccccC
Q 038390 166 IVQLNLKGCKNIECLPN-FISALKFPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTA 223 (228)
Q Consensus 166 L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~ 223 (228)
|+.|++++| .++.+|. .+.++++|++|++++ +.++.+| ..+..+++|++|++++|+
T Consensus 3 L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 444444443 2334432 334444555555554 3344443 244555555555555554
No 38
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.54 E-value=7.9e-09 Score=73.79 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=65.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCC-CCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNM-KFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l-~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+....+|+..+|++| .++.+|+.+... +..+.|++++|.++++|.++..++.|+.|+++.| .+...|.-+..|.+|.
T Consensus 49 l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 49 LSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLD 126 (177)
T ss_pred HhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHH
Confidence 445566777788887 677777665543 4677888888888888888888888888888875 4566777676777777
Q ss_pred EEeccCCCCCcccch
Q 038390 192 TLNFSGLLKFRLFPE 206 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~ 206 (228)
.|+..+ +....+|-
T Consensus 127 ~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 127 MLDSPE-NARAEIDV 140 (177)
T ss_pred HhcCCC-CccccCcH
Confidence 777776 55556653
No 39
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=98.53 E-value=3.9e-07 Score=66.34 Aligned_cols=75 Identities=31% Similarity=0.442 Sum_probs=61.5
Q ss_pred hHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhc-----C----------chhhhhccccHHHHHHHHHHhhcchhh
Q 038390 7 APSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWK-----N----------TSLVRKHIGSFQEAIVNHEEVLKGEYR 71 (228)
Q Consensus 7 ~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~-----~----------ps~vr~q~g~f~~af~~~~~~~~~~~~ 71 (228)
++.++|++|+..|+++|++|..|.||..|+....++. + |+.+..+.+.++.++......+.....
T Consensus 47 ~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~ 126 (140)
T smart00255 47 EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEK 126 (140)
T ss_pred HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchh
Confidence 7899999999999999999999999999999999864 2 678999999999998877444444433
Q ss_pred hHHhHHHHHhh
Q 038390 72 KGAKMERRFAR 82 (228)
Q Consensus 72 kl~~W~~al~~ 82 (228)
+ ..|+.....
T Consensus 127 ~-~fW~~~~~~ 136 (140)
T smart00255 127 E-RFWKKALYA 136 (140)
T ss_pred H-HHHHHHHHH
Confidence 3 678876654
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.47 E-value=1.2e-07 Score=54.80 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=18.8
Q ss_pred CCCEEeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390 189 FPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
+|++|++++ +.++.+|+.+++|++|+.|++++|.|+++
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 455555555 34455555455555555555555555443
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.45 E-value=3.1e-07 Score=77.66 Aligned_cols=93 Identities=24% Similarity=0.396 Sum_probs=58.7
Q ss_pred CccEEEccCCCCCcccchhhcCCCCcceEEccCC-cccccchhcCCCCCCcEEeccC--CCCCCccCcccCCC-------
Q 038390 118 SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT-DIKGLLLSIVLLSGIVQLNLKG--CKNIECLPNFISAL------- 187 (228)
Q Consensus 118 ~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~--~~~~~~lp~~~~~l------- 187 (228)
+|++|.+++|..+..+|+.+. .+|++|++++| .+..+|.+ |+.|++.. +..+..+|.++..|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~ 144 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNP 144 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcchHhheecccccc
Confidence 588888888888888887553 57888888887 77777754 44444443 22355666554333
Q ss_pred -----------CCCCEEeccCCCCCcccchhhhcCc-cccceecccc
Q 038390 188 -----------KFPSTLNFSGLLKFRLFPEIMGCIE-HLLALRLLGT 222 (228)
Q Consensus 188 -----------~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~n 222 (228)
++|++|++++|..+ .+| ..++ +|+.|+++.|
T Consensus 145 ~~~~~lp~~LPsSLk~L~Is~c~~i-~LP---~~LP~SLk~L~ls~n 187 (426)
T PRK15386 145 ENQARIDNLISPSLKTLSLTGCSNI-ILP---EKLPESLQSITLHIE 187 (426)
T ss_pred ccccccccccCCcccEEEecCCCcc-cCc---ccccccCcEEEeccc
Confidence 25677777776533 222 2233 7777777665
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=4.3e-08 Score=82.05 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=62.2
Q ss_pred cccccccccccccc---------ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCccc--ccchhcC-----
Q 038390 99 VHSRTSSHPFQNLR---------LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIK--GLLLSIV----- 161 (228)
Q Consensus 99 ~~~l~~l~~~~nl~---------~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~--~lp~~~~----- 161 (228)
|+++++++.+.||- ..+|++|+.|+|+.|...-...+ .-..+++|+.|.++.|.++ ++-....
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 56666666665544 55677777777777632211111 1123455666666666554 1111122
Q ss_pred -------------------CCCCCcEEeccCCCCCCccC--cccCCCCCCCEEeccCCCCCcc--cchh-----hhcCcc
Q 038390 162 -------------------LLSGIVQLNLKGCKNIECLP--NFISALKFPSTLNFSGLLKFRL--FPEI-----MGCIEH 213 (228)
Q Consensus 162 -------------------~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L~~L~l~~c~~l~~--lp~~-----~~~l~~ 213 (228)
.+..|+.|+|++|+. ..++ ...+.++.|..|+++.| .+.+ +|+. .-.+++
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhhhhcccc-CcchhcCCCccchhhhccccc
Confidence 234455555555432 2233 22445555555555552 2332 2322 234566
Q ss_pred ccceeccccCCCC
Q 038390 214 LLALRLLGTAIRG 226 (228)
Q Consensus 214 L~~L~l~~n~l~~ 226 (228)
|++|+++.|+|.+
T Consensus 303 L~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 303 LEYLNISENNIRD 315 (505)
T ss_pred ceeeecccCcccc
Confidence 6666666666644
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=8.7e-09 Score=91.10 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=94.4
Q ss_pred ccccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCC
Q 038390 99 VHSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNI 177 (228)
Q Consensus 99 ~~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~ 177 (228)
|+.|+.++.+ +.-++.|+.|||++| ++.... .+..++.|++||+++|.+..+|.- ...+. |+.|.+++| -+
T Consensus 173 yN~L~~mD~S----Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l 244 (1096)
T KOG1859|consen 173 YNRLVLMDES----LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-AL 244 (1096)
T ss_pred hhhHHhHHHH----HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HH
Confidence 6777778877 888999999999999 666665 688899999999999999988853 23344 999999985 46
Q ss_pred CccCcccCCCCCCCEEeccCCCCCcccc--hhhhcCccccceeccccCCC
Q 038390 178 ECLPNFISALKFPSTLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 178 ~~lp~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~ 225 (228)
+++- .+.+|++|+.||++. |.+..+. +-++.|..|+.|+|.||.+-
T Consensus 245 ~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 245 TTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6664 478999999999999 6666554 34677889999999999763
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.39 E-value=5.1e-07 Score=52.08 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=16.6
Q ss_pred CcceEEccCCcccccchhcCCCCCCcEEeccCC
Q 038390 142 FLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGC 174 (228)
Q Consensus 142 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 174 (228)
+|++|++++|.|+++|+.+++|++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 445555555555555554555555555555554
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=2.1e-06 Score=72.72 Aligned_cols=98 Identities=23% Similarity=0.409 Sum_probs=57.9
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCC---cccccchhcCCC------------------CCCcEEeccCCC
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT---DIKGLLLSIVLL------------------SGIVQLNLKGCK 175 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~---~i~~lp~~~~~l------------------~~L~~L~l~~~~ 175 (228)
++|+.|++++|..+..+|+. |+.|++.++ .+..+|.++..| .+|++|++.+|.
T Consensus 94 ~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 94 EGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred hhhhheEccCcccccccccc------cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence 46888888888777777753 555556554 355667655444 368888888876
Q ss_pred CCCccCcccCCCCCCCEEeccCCC------CCcccchhhhcCccccceeccccCC
Q 038390 176 NIECLPNFISALKFPSTLNFSGLL------KFRLFPEIMGCIEHLLALRLLGTAI 224 (228)
Q Consensus 176 ~~~~lp~~~~~l~~L~~L~l~~c~------~l~~lp~~~~~l~~L~~L~l~~n~l 224 (228)
.+ .+|..+. .+|+.|.++.+. ....+|+.+ .+.....+.++.+.|
T Consensus 168 ~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 168 NI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred cc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence 43 3454333 478888876632 122566555 444333344444333
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=7.1e-07 Score=76.87 Aligned_cols=109 Identities=26% Similarity=0.246 Sum_probs=82.5
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|..|++.+| .++.+...+..+.+|++|++++|.|+.+. .+..++.|+.|++.+|. +..+.. +..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISG-LESLKSLKL 166 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccC-Cccchhhhc
Confidence 667788888888887 67777666778888999999999888775 35667778888888863 555543 556888888
Q ss_pred EeccCCCCCcccchh-hhcCccccceeccccCCCC
Q 038390 193 LNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 193 L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~ 226 (228)
+++++ +.+..+... +..+.+++.+++.+|.+..
T Consensus 167 l~l~~-n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 167 LDLSY-NRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCCc-chhhhhhhhhhhhccchHHHhccCCchhc
Confidence 88888 566666543 5677888888888887764
No 47
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.16 E-value=3.6e-07 Score=75.88 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=80.2
Q ss_pred CCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccc-h
Q 038390 129 KLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFP-E 206 (228)
Q Consensus 129 ~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp-~ 206 (228)
.+.++|..+. ..-.+++|..|.|+.+|+ .|+.+++|+.|||++|.....-|..|.++.+|-.|.+.++++++.+| .
T Consensus 57 GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 4666776543 356789999999999976 58999999999999975433348889999999999998889999999 5
Q ss_pred hhhcCccccceeccccCCCCC
Q 038390 207 IMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 207 ~~~~l~~L~~L~l~~n~l~~l 227 (228)
.|+.|.+|+.|.+.-|.+.-+
T Consensus 135 ~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred HhhhHHHHHHHhcChhhhcch
Confidence 789999999999998877643
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.05 E-value=1e-06 Score=75.84 Aligned_cols=108 Identities=23% Similarity=0.197 Sum_probs=88.1
Q ss_pred ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEe
Q 038390 115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLN 194 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 194 (228)
.+..++.++++.| .++.+-..++.+++|+.|++.+|.|..+...+..+.+|++|++++| .++.+.. +..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhe
Confidence 5667777788877 5666555578899999999999999988866889999999999996 4666643 67788899999
Q ss_pred ccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390 195 FSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 195 l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
+++ |.+..++. +..++.|+.+++++|.++.+
T Consensus 147 l~~-N~i~~~~~-~~~l~~L~~l~l~~n~i~~i 177 (414)
T KOG0531|consen 147 LSG-NLISDISG-LESLKSLKLLDLSYNRIVDI 177 (414)
T ss_pred ecc-CcchhccC-CccchhhhcccCCcchhhhh
Confidence 999 77877754 45589999999999998754
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=4.4e-06 Score=70.25 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=75.2
Q ss_pred ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccc--hhcCCCCCCcEEeccCCCCCCcc--Ccc-----cC
Q 038390 115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLL--LSIVLLSGIVQLNLKGCKNIECL--PNF-----IS 185 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~l--p~~-----~~ 185 (228)
.+|+|+.|+|.+|..+........-+..|++|||++|.+-..+ ...+.++.|+.|+++.|. +.++ |+. -.
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhc
Confidence 4455555555555322222222334567888999998877666 467899999999999864 4443 432 24
Q ss_pred CCCCCCEEeccCCCCCcccc--hhhhcCccccceeccccCCC
Q 038390 186 ALKFPSTLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 186 ~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~ 225 (228)
.+++|++|++.. |.+..++ ..+..+++|+.|.+..|.+.
T Consensus 299 ~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 299 TFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccceeeeccc-Cccccccccchhhccchhhhhhccccccc
Confidence 678999999999 6776666 35677889999998888775
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=5e-06 Score=75.56 Aligned_cols=109 Identities=25% Similarity=0.248 Sum_probs=79.0
Q ss_pred cccCCccEEEccCCCCC-cccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC--cccCCCCCC
Q 038390 114 IFMKSPKTLILSGCSKL-KKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP--NFISALKFP 190 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~l-~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L 190 (228)
..||+|+.|.++|=... ..+-....+.++|..||++++.++.+ .++++|++|+.|.+.+-. +.... ..+.+|++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCC
Confidence 35789999999874221 33445567889999999999999888 689999999999888743 22222 246789999
Q ss_pred CEEeccCCCCCcccc-------hhhhcCccccceeccccCCC
Q 038390 191 STLNFSGLLKFRLFP-------EIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp-------~~~~~l~~L~~L~l~~n~l~ 225 (228)
+.||+|. .....-+ +.-..|+.|+.||.|++.+.
T Consensus 223 ~vLDIS~-~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 223 RVLDISR-DKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred Ceeeccc-cccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999987 3333222 11235889999999998765
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=8.1e-07 Score=63.66 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=72.2
Q ss_pred cEEEccCCCCCcccchhh---cCCCCcceEEccCCcccccchhcCCC-CCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390 120 KTLILSGCSKLKKFPEIV---GNMKFLRQLLLDGTDIKGLLLSIVLL-SGIVQLNLKGCKNIECLPNFISALKFPSTLNF 195 (228)
Q Consensus 120 ~~L~ls~~~~l~~~p~~~---~~l~~L~~L~l~~~~i~~lp~~~~~l-~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 195 (228)
..++|+.| .+..+++.. .....|+..++++|.++.+|+.+... +.++.|++.+| .+.++|.++..++.|+.|++
T Consensus 30 h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 30 HFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 44566666 555555443 33445666677777777777766443 46777777774 46777777777777787877
Q ss_pred cCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 196 SGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 196 ~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+. |.+..+|..+..|.+|-.|+..+|.+.+||
T Consensus 108 ~~-N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 108 RF-NPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cc-CccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 77 667777777767777777777777776665
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=5.1e-07 Score=80.24 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=86.1
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcc-cCCCCCCCEEec
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNF-ISALKFPSTLNF 195 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l 195 (228)
..|.+.+.++| .+..+.+.+.-++.++.|||+.|.+..+. .+..++.|+.||++.| .++.+|.. ...++ |+.|.+
T Consensus 164 n~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeee
Confidence 35677788877 68888888888999999999999998887 6888999999999995 57888862 33444 999999
Q ss_pred cCCCCCcccchhhhcCccccceeccccCCCC
Q 038390 196 SGLLKFRLFPEIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 196 ~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 226 (228)
++ |.++.+- .+.+|++|+.||++.|-|.+
T Consensus 240 rn-N~l~tL~-gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 240 RN-NALTTLR-GIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred cc-cHHHhhh-hHHhhhhhhccchhHhhhhc
Confidence 99 7787774 57899999999999997763
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.73 E-value=9.9e-06 Score=66.36 Aligned_cols=41 Identities=15% Similarity=0.211 Sum_probs=23.3
Q ss_pred cCCCCCCCEEeccCCCCCc-----ccchhhhcCccccceeccccCCC
Q 038390 184 ISALKFPSTLNFSGLLKFR-----LFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 184 ~~~l~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
+..+++|+.|||++ |.++ .+...+..+++|+.|++++|.++
T Consensus 209 l~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccccc
Confidence 44566666666666 3332 23344555666666666666654
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=2.5e-05 Score=71.15 Aligned_cols=108 Identities=21% Similarity=0.308 Sum_probs=80.2
Q ss_pred ccCCccEEEccCCCCC-cccchhhcC-CCCcceEEccCCccc--ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390 115 FMKSPKTLILSGCSKL-KKFPEIVGN-MKFLRQLLLDGTDIK--GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP 190 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l-~~~p~~~~~-l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 190 (228)
.-.+|+.||++|...+ ...|..++. +++|+.|.+++-.+. +.-.-..++++|..||++++ +++.+ ..+++|++|
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNL 197 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccH
Confidence 3457899999987554 334555554 699999999986543 33445578899999999995 56666 678999999
Q ss_pred CEEeccCCCCCcccc--hhhhcCccccceeccccCCC
Q 038390 191 STLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~ 225 (228)
+.|.+.+ -.+.... ..+-+|++|+.||+|.....
T Consensus 198 q~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 198 QVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHHhccC-CCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9999987 4455433 35678999999999987543
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=8.9e-06 Score=65.57 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=61.0
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCC-CCcceEEccCCc----ccccchhcCCCCCCcEEeccCCCCCCc-cCcccC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNM-KFLRQLLLDGTD----IKGLLLSIVLLSGIVQLNLKGCKNIEC-LPNFIS 185 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l-~~L~~L~l~~~~----i~~lp~~~~~l~~L~~L~l~~~~~~~~-lp~~~~ 185 (228)
+.+++.|..|++++|...... ...+... ++|+.|+++|+. ...+..-...+++|..|||++|..++. ....+.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 455556666666666333221 1111111 345556666551 112222335677888888888765543 233466
Q ss_pred CCCCCCEEeccCCCCCcccch---hhhcCccccceecccc
Q 038390 186 ALKFPSTLNFSGLLKFRLFPE---IMGCIEHLLALRLLGT 222 (228)
Q Consensus 186 ~l~~L~~L~l~~c~~l~~lp~---~~~~l~~L~~L~l~~n 222 (228)
+++-|++|.++.|..+. |+ .++..++|.+|++.++
T Consensus 336 kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 77888888888876542 32 3567788888887765
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00015 Score=55.34 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=71.0
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCC-CCCCcEEeccCCCCCCccCc--ccCCCCCCCEE
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVL-LSGIVQLNLKGCKNIECLPN--FISALKFPSTL 193 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L 193 (228)
.....+||++| .+..++. +..++.|..|.+.+|+|..+.+.++. +++|..|.|.+|+ +.++-+ .+..|+.|++|
T Consensus 42 d~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceeccccc-chhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 45677899988 5555544 56688899999999999988666654 4678999998864 444322 25677888999
Q ss_pred eccCCCCCcccch----hhhcCccccceeccc
Q 038390 194 NFSGLLKFRLFPE----IMGCIEHLLALRLLG 221 (228)
Q Consensus 194 ~l~~c~~l~~lp~----~~~~l~~L~~L~l~~ 221 (228)
.+-+ |....-+. .+..+++|+.||.++
T Consensus 119 tll~-Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLG-NPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecC-CchhcccCceeEEEEecCcceEeehhh
Confidence 8888 44443332 356788888888764
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00016 Score=55.28 Aligned_cols=83 Identities=22% Similarity=0.261 Sum_probs=60.8
Q ss_pred ccccCCccEEEccCCCCCcccchhhc-CCCCcceEEccCCcccccch--hcCCCCCCcEEeccCCCCCCccCc----ccC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVG-NMKFLRQLLLDGTDIKGLLL--SIVLLSGIVQLNLKGCKNIECLPN----FIS 185 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~-~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~----~~~ 185 (228)
+..++.|.+|.++.| .+..+.+.++ -+++|..|.|.+|.|.++.+ .+..++.|++|.+-+|+ ....+. -+.
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEE
Confidence 778889999999988 5666644444 45679999999998876632 35677899999998865 333322 256
Q ss_pred CCCCCCEEeccC
Q 038390 186 ALKFPSTLNFSG 197 (228)
Q Consensus 186 ~l~~L~~L~l~~ 197 (228)
.+++|++||..+
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 788999999876
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=8.9e-05 Score=59.94 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=23.3
Q ss_pred CCccEEEccCCCCCcc---cchhhcCCCCcceEEccCCcccccchhc-CCCCCCcEEeccC
Q 038390 117 KSPKTLILSGCSKLKK---FPEIVGNMKFLRQLLLDGTDIKGLLLSI-VLLSGIVQLNLKG 173 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~---~p~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~ 173 (228)
+.++.|||.+| .+.. +...+.+|+.|+.|+++.|.+.....+. -.+.+|+.|-|.+
T Consensus 71 ~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 71 TDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred hhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 34455555554 2222 2233444555555555555433221111 1233455555544
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=1.7e-05 Score=64.03 Aligned_cols=109 Identities=18% Similarity=0.112 Sum_probs=78.0
Q ss_pred ccccCCccEEEccCCCCCcccc--hhhcCCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCCCC---CccCc
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP--EIVGNMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCKNI---ECLPN 182 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p--~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~---~~lp~ 182 (228)
+..=.+|+.||+++|+.+.+.. -.+.+++.|..|++++|.+.. +-.+++ .+|..|+++||... ..+.-
T Consensus 230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~t 307 (419)
T KOG2120|consen 230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLST 307 (419)
T ss_pred HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHH
Confidence 5566778999999998776643 346788899999999985541 122222 47888899887531 11222
Q ss_pred ccCCCCCCCEEeccCCCCCcc-cchhhhcCccccceeccccC
Q 038390 183 FISALKFPSTLNFSGLLKFRL-FPEIMGCIEHLLALRLLGTA 223 (228)
Q Consensus 183 ~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~n~ 223 (228)
-...+++|.+|||++|..++. .-..+-.++.|++|.++.|.
T Consensus 308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 235789999999999988874 34567788999999999885
No 60
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00055 Score=54.21 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=61.6
Q ss_pred cCCccEEEccCCCCCcccchhhcCCCCcceEEccCC--ccc-ccchhcCCCCCCcEEeccCCCCCCc---cCcccCCCCC
Q 038390 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT--DIK-GLLLSIVLLSGIVQLNLKGCKNIEC---LPNFISALKF 189 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~~~~---lp~~~~~l~~ 189 (228)
+..|+.|.+.++ .+..+.. +..|++|++|.++.| ++. .++.....+++|++|++++|+ ++. +++ ...+.+
T Consensus 42 ~~~le~ls~~n~-gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRP-LKELEN 117 (260)
T ss_pred ccchhhhhhhcc-ceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccch-hhhhcc
Confidence 344555555544 2222221 345778999999998 443 555556667899999999864 332 222 456777
Q ss_pred CCEEeccCCCCCcccc----hhhhcCccccceecc
Q 038390 190 PSTLNFSGLLKFRLFP----EIMGCIEHLLALRLL 220 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp----~~~~~l~~L~~L~l~ 220 (228)
|..|++.+|.... +- ..+..+++|++|+--
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhcccccc
Confidence 8888888876443 22 235667777777643
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.00 E-value=0.00062 Score=56.07 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=53.7
Q ss_pred ccccCCccEEEccCCCCC----cccchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCCc----
Q 038390 113 LIFMKSPKTLILSGCSKL----KKFPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIEC---- 179 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l----~~~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~---- 179 (228)
+...+.|+.+.+..|..- ..+...+..+++|+.|||..|.++ .+...+..+++|+.|++++|..-..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 334455555555555221 112334455566666666666443 2334455555666666666542111
Q ss_pred cCccc-CCCCCCCEEeccCCCCCc----ccchhhhcCccccceeccccCC
Q 038390 180 LPNFI-SALKFPSTLNFSGLLKFR----LFPEIMGCIEHLLALRLLGTAI 224 (228)
Q Consensus 180 lp~~~-~~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~n~l 224 (228)
+-..+ ...++|+++.+.+|..-. .+-..+...+.|..|+|++|.+
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11111 124556666666632211 1223344566777777777766
No 62
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=96.93 E-value=0.00014 Score=49.78 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=35.7
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHH
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVE 41 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~ 41 (228)
|+.+...+.++|++|+..|+++|++|..|.||..|+....+
T Consensus 36 g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~ 76 (102)
T PF13676_consen 36 GEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK 76 (102)
T ss_dssp TS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH
Confidence 56677889999999999999999999999999998877754
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.84 E-value=0.00069 Score=32.68 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=8.2
Q ss_pred cceEEccCCcccccchhc
Q 038390 143 LRQLLLDGTDIKGLLLSI 160 (228)
Q Consensus 143 L~~L~l~~~~i~~lp~~~ 160 (228)
|++|++++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.73 E-value=0.00057 Score=30.76 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=8.5
Q ss_pred cccceeccccCCCCCC
Q 038390 213 HLLALRLLGTAIRGLP 228 (228)
Q Consensus 213 ~L~~L~l~~n~l~~lP 228 (228)
+|+.|++++|.|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5677777777777666
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00028 Score=56.61 Aligned_cols=80 Identities=19% Similarity=0.066 Sum_probs=61.7
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch--hcCCCCCCcEEeccCCCCCCccCcc-----cC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL--SIVLLSGIVQLNLKGCKNIECLPNF-----IS 185 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~-----~~ 185 (228)
...++.|++|.||-| .+..+.. +..++.|++|+|..|.|..+.+ -+.++++|+.|.|..|...+.-+.. +.
T Consensus 37 c~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 567888999999998 5666544 6789999999999999987754 3688999999999998876654432 33
Q ss_pred CCCCCCEEe
Q 038390 186 ALKFPSTLN 194 (228)
Q Consensus 186 ~l~~L~~L~ 194 (228)
.|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 567777765
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.0031 Score=51.30 Aligned_cols=62 Identities=26% Similarity=0.223 Sum_probs=32.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc--ccchhcCCCCCCcEEeccCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK--GLLLSIVLLSGIVQLNLKGC 174 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~ 174 (228)
+.+||.|++|+++.|+....+...-..+.+|+.|.|.++.+. .....+..++.++.|.++.|
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 557777778888776432222111134567777777776443 33334444544444444443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.38 E-value=0.0023 Score=50.80 Aligned_cols=85 Identities=21% Similarity=0.151 Sum_probs=61.6
Q ss_pred ccccCCccEEEccCC--CCCcccchhhcCCCCcceEEccCCccccc--chhcCCCCCCcEEeccCCCCCCcc-C-c-ccC
Q 038390 113 LIFMKSPKTLILSGC--SKLKKFPEIVGNMKFLRQLLLDGTDIKGL--LLSIVLLSGIVQLNLKGCKNIECL-P-N-FIS 185 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~--~~l~~~p~~~~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~~~~~l-p-~-~~~ 185 (228)
+-.|++|+.|.+|.| +....++.....+++|+++++++|.|..+ -.....+.+|..|++.+|.....- + . -+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 567789999999999 55666776677789999999999988743 123566778999999988644311 1 1 245
Q ss_pred CCCCCCEEeccC
Q 038390 186 ALKFPSTLNFSG 197 (228)
Q Consensus 186 ~l~~L~~L~l~~ 197 (228)
.+++|.+|+-..
T Consensus 141 ll~~L~~LD~~d 152 (260)
T KOG2739|consen 141 LLPSLKYLDGCD 152 (260)
T ss_pred Hhhhhccccccc
Confidence 567888876554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.00032 Score=56.29 Aligned_cols=99 Identities=22% Similarity=0.261 Sum_probs=72.2
Q ss_pred cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCc--ccCCCCCCCEE
Q 038390 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPN--FISALKFPSTL 193 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L 193 (228)
+.+.+.|+.-|| .+..+. ....|+.|+.|.|+-|.|+.+. .+..+++|+.|+|..| .+.++-+ -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 556678888888 565543 3578999999999999998885 3788999999999885 3555433 25688889988
Q ss_pred eccCCCCCcccch-----hhhcCcccccee
Q 038390 194 NFSGLLKFRLFPE-----IMGCIEHLLALR 218 (228)
Q Consensus 194 ~l~~c~~l~~lp~-----~~~~l~~L~~L~ 218 (228)
=|..|.....-+. .+.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8877555554443 255678888776
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.12 E-value=0.0024 Score=30.71 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=17.6
Q ss_pred CccEEEccCCCCCcccchhhcCC
Q 038390 118 SPKTLILSGCSKLKKFPEIVGNM 140 (228)
Q Consensus 118 ~L~~L~ls~~~~l~~~p~~~~~l 140 (228)
+|++||+++| .++.+|+.+++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999999 777999876653
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.72 E-value=0.054 Score=38.20 Aligned_cols=101 Identities=7% Similarity=0.116 Sum_probs=46.0
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+.++++|+.+.+.. .+..++ ..+..+++|+.+.+..+ +..++. .+.++.+|+.+.+.+ .+..++. .+..+++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccccccc
Confidence 45556666666653 344553 34556666777777664 555543 345565677777754 2344433 3445677
Q ss_pred CCEEeccCCCCCcccch-hhhcCccccceeccc
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLG 221 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 221 (228)
|+.+.+.. + +..++. .+.++ .|+.+.+..
T Consensus 83 l~~i~~~~-~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPS-N-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETT-T--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCc-c-ccEEchhhhcCC-CceEEEECC
Confidence 77777654 2 455543 44554 666666554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.36 E-value=0.012 Score=26.33 Aligned_cols=9 Identities=44% Similarity=0.294 Sum_probs=3.3
Q ss_pred ccEEEccCC
Q 038390 119 PKTLILSGC 127 (228)
Q Consensus 119 L~~L~ls~~ 127 (228)
|++|++++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 344444444
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.29 E-value=0.012 Score=29.41 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=13.9
Q ss_pred CccccceeccccCCCCCC
Q 038390 211 IEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 211 l~~L~~L~l~~n~l~~lP 228 (228)
+++|+.|+|++|.|+.+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 456788888888888776
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.29 E-value=0.012 Score=29.41 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=13.9
Q ss_pred CccccceeccccCCCCCC
Q 038390 211 IEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 211 l~~L~~L~l~~n~l~~lP 228 (228)
+++|+.|+|++|.|+.+|
T Consensus 1 L~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 1 LPNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCCEEECCCCcCCcCC
Confidence 456788888888888776
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.0058 Score=46.87 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=35.1
Q ss_pred ccEEEccCCCCCcccchhhcCCCCcceEEccCCc-ccc-cchhc-CCCCCCcEEeccCCCCCCcc-CcccCCCCCCCEEe
Q 038390 119 PKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTD-IKG-LLLSI-VLLSGIVQLNLKGCKNIECL-PNFISALKFPSTLN 194 (228)
Q Consensus 119 L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~-i~~-lp~~~-~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~ 194 (228)
++.+|-+++..-..--+.+..++.++.|.+.+|. +.. --+-+ +-.++|+.|++++|..+++- -..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4556666552211112334445555555555541 110 00011 12345666666666555443 12344555666665
Q ss_pred ccC
Q 038390 195 FSG 197 (228)
Q Consensus 195 l~~ 197 (228)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.14 E-value=0.0091 Score=51.96 Aligned_cols=35 Identities=34% Similarity=0.435 Sum_probs=16.5
Q ss_pred cCCccEEEccCCCCCcc--cchhhcCCCCcceEEccC
Q 038390 116 MKSPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDG 150 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~ 150 (228)
++.|+.|.+.+|..+.. +-.....++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 44555555555544433 223344445555555544
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.04 E-value=0.035 Score=48.32 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=69.7
Q ss_pred ccccCCccEEEccCC-CCCcccc----hhhcCCCCcceEEccCCc-cccc--chhcCCCCCCcEEeccCCCCCCc--cCc
Q 038390 113 LIFMKSPKTLILSGC-SKLKKFP----EIVGNMKFLRQLLLDGTD-IKGL--LLSIVLLSGIVQLNLKGCKNIEC--LPN 182 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~-~~l~~~p----~~~~~l~~L~~L~l~~~~-i~~l--p~~~~~l~~L~~L~l~~~~~~~~--lp~ 182 (228)
...++.|+.|++++| ......+ .....+.+|+.|+++++. ++.. ..-...+++|+.|.+.+|..++. +-.
T Consensus 210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~ 289 (482)
T KOG1947|consen 210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS 289 (482)
T ss_pred HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence 667889999999983 2322222 334556889999999886 5533 21123378999999888865332 223
Q ss_pred ccCCCCCCCEEeccCCCCCcc--cchhhhcCccccceecc
Q 038390 183 FISALKFPSTLNFSGLLKFRL--FPEIMGCIEHLLALRLL 220 (228)
Q Consensus 183 ~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~ 220 (228)
-...+++|++|++++|..+.. +......+++|+.|.+.
T Consensus 290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 345678899999999888742 44444556666665543
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.52 E-value=0.06 Score=26.75 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=10.5
Q ss_pred CCcceEEccCCcccccchh
Q 038390 141 KFLRQLLLDGTDIKGLLLS 159 (228)
Q Consensus 141 ~~L~~L~l~~~~i~~lp~~ 159 (228)
++|+.|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.52 E-value=0.06 Score=26.75 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=10.5
Q ss_pred CCcceEEccCCcccccchh
Q 038390 141 KFLRQLLLDGTDIKGLLLS 159 (228)
Q Consensus 141 ~~L~~L~l~~~~i~~lp~~ 159 (228)
++|+.|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555543
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.44 E-value=0.12 Score=41.77 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=7.1
Q ss_pred CCCCcceEEccCCcc
Q 038390 139 NMKFLRQLLLDGTDI 153 (228)
Q Consensus 139 ~l~~L~~L~l~~~~i 153 (228)
+|+.|+..+||.|.+
T Consensus 90 kcp~l~~v~LSDNAf 104 (388)
T COG5238 90 KCPRLQKVDLSDNAF 104 (388)
T ss_pred cCCcceeeecccccc
Confidence 444455555555433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.26 E-value=0.0018 Score=50.85 Aligned_cols=61 Identities=11% Similarity=-0.076 Sum_probs=30.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGC 174 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 174 (228)
++-++.|..|+++.| .+..+|+.++....++.+++..|..+..|.+.+.++.++++++.++
T Consensus 61 ~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 61 FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 334444444555544 4444555555555555555555555555555555555555555443
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=93.19 E-value=0.072 Score=45.35 Aligned_cols=110 Identities=17% Similarity=0.118 Sum_probs=54.3
Q ss_pred ccccCCccEEEccCCCCCccc--chhhcCCCCcceEEccCCccc---ccchhcCCCCCCcEEeccCCCCCCcc-----Cc
Q 038390 113 LIFMKSPKTLILSGCSKLKKF--PEIVGNMKFLRQLLLDGTDIK---GLLLSIVLLSGIVQLNLKGCKNIECL-----PN 182 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~--p~~~~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~~~~l-----p~ 182 (228)
..+..+|++|.+++|+.+... ...-.++..|+.+++..+... ++-.--.+++.|+.|.+++|..+++. ..
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 335566777777777655432 112234556666666655322 12222345566666666666544332 22
Q ss_pred ccCCCCCCCEEeccCCCCCcc-cchhhhcCccccceecccc
Q 038390 183 FISALKFPSTLNFSGLLKFRL-FPEIMGCIEHLLALRLLGT 222 (228)
Q Consensus 183 ~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~n 222 (228)
.-..+..|..+.+++|..+.. .-+-+..+++|+.+++-++
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 223445556666666554442 2233444555555555444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.13 E-value=0.0015 Score=51.24 Aligned_cols=85 Identities=18% Similarity=0.026 Sum_probs=70.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+......+.||++.| .+..+-..+.-++.+..|+++.|.+..+|..++.+..++.+++..| +....|.+++.++.+++
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 677788899999988 4555555567778889999999999999998888888888888774 57889999999999999
Q ss_pred EeccCCC
Q 038390 193 LNFSGLL 199 (228)
Q Consensus 193 L~l~~c~ 199 (228)
+++-++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 9988844
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.99 E-value=0.097 Score=42.35 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=75.3
Q ss_pred ccccCCccEEEccCCCCCcc----cchhhcCCCCcceEEccCCccc----ccc-------hhcCCCCCCcEEeccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKK----FPEIVGNMKFLRQLLLDGTDIK----GLL-------LSIVLLSGIVQLNLKGCKNI 177 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~----~p~~~~~l~~L~~L~l~~~~i~----~lp-------~~~~~l~~L~~L~l~~~~~~ 177 (228)
+.-+..++.++||||..-+. +-..+.+-.+|+..+++.-... ++| +.+-.++.|+..+|+.|-.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34477889999999954322 3445566778888888764221 333 34556788999999987655
Q ss_pred CccCcc----cCCCCCCCEEeccCCCCCcccch-hhh-------------cCccccceeccccCCCC
Q 038390 178 ECLPNF----ISALKFPSTLNFSGLLKFRLFPE-IMG-------------CIEHLLALRLLGTAIRG 226 (228)
Q Consensus 178 ~~lp~~----~~~l~~L~~L~l~~c~~l~~lp~-~~~-------------~l~~L~~L~l~~n~l~~ 226 (228)
.+.|+. +.+-+.|.+|.+++ +.++.+.. -++ +-+.|+......|.+..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeec-CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 555543 45668899999988 56666542 233 34678888888887764
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.28 E-value=0.66 Score=32.51 Aligned_cols=94 Identities=12% Similarity=0.126 Sum_probs=50.7
Q ss_pred ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+++|+.+.+.++ +..++. .+.++.+++.+.+.. .+..++. .+..+++|+.+++..+ +..++. .+.++ +
T Consensus 31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T
T ss_pred ccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC-C
Confidence 667778999999864 666654 567777899999976 5555654 4566899999999753 555644 46666 8
Q ss_pred CCEEeccCCCCCcccc-hhhhcCccc
Q 038390 190 PSTLNFSGLLKFRLFP-EIMGCIEHL 214 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp-~~~~~l~~L 214 (228)
|+.+.+.. .+..++ ..+.++++|
T Consensus 105 l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 105 LKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp --EEE-TT--B-SS----GGG-----
T ss_pred ceEEEECC--CccEECCccccccccC
Confidence 88888764 345555 345666555
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=92.08 E-value=0.085 Score=26.37 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=12.3
Q ss_pred ccccceeccccCCCCCC
Q 038390 212 EHLLALRLLGTAIRGLP 228 (228)
Q Consensus 212 ~~L~~L~l~~n~l~~lP 228 (228)
++|+.|++++|+++++|
T Consensus 2 ~~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 2 PSLKELNVSNNQLTSLP 18 (26)
T ss_pred cccceeecCCCccccCc
Confidence 35677777777777776
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=0.046 Score=42.07 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=33.8
Q ss_pred cceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccC-ccc-CCCCCCCEEeccCCCCCcccc-hhhhcCcccccee
Q 038390 143 LRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLP-NFI-SALKFPSTLNFSGLLKFRLFP-EIMGCIEHLLALR 218 (228)
Q Consensus 143 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~-~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~ 218 (228)
++.++.+++.|-.. -..+.+++.++.|.+.+|..+.+.- ..+ +-.++|+.|++++|..+++.- ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 34444444443322 1234445555555555554433210 001 123455555555555555432 3444455555544
Q ss_pred cc
Q 038390 219 LL 220 (228)
Q Consensus 219 l~ 220 (228)
+.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.67 E-value=0.16 Score=43.40 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=78.0
Q ss_pred cccccccccc--cccc-------ccccCCccEEEccCCCCCcc--cchhhcCCCCcceEEccCCc-cc-----ccchhcC
Q 038390 99 VHSRTSSHPF--QNLR-------LIFMKSPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDGTD-IK-----GLLLSIV 161 (228)
Q Consensus 99 ~~~l~~l~~~--~nl~-------~~~l~~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~~~-i~-----~lp~~~~ 161 (228)
|++|+.++.+ +++. -.+.++|+.+++.+|..... +.....+++.|+.|.++.+. ++ .+...-.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 6666654443 3222 34677899999998854422 33444577889999998772 22 1233335
Q ss_pred CCCCCcEEeccCCCCCCcc-CcccCCCCCCCEEeccCCCCCcccc--hhhhcCcccccee
Q 038390 162 LLSGIVQLNLKGCKNIECL-PNFISALKFPSTLNFSGLLKFRLFP--EIMGCIEHLLALR 218 (228)
Q Consensus 162 ~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~ 218 (228)
.+..|..+.|++|+.+++- -.....+++|+.+++.+|..+++-| ....+++++++.-
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 5778999999998876542 3456788899999999998876543 3345566665543
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.03 E-value=0.23 Score=24.88 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=11.4
Q ss_pred CccccceeccccCCCCC
Q 038390 211 IEHLLALRLLGTAIRGL 227 (228)
Q Consensus 211 l~~L~~L~l~~n~l~~l 227 (228)
+++|+.|++++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35677777777777643
No 89
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=86.76 E-value=0.64 Score=33.21 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=30.4
Q ss_pred CCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC
Q 038390 3 SISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN 44 (228)
Q Consensus 3 ~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~ 44 (228)
-|...+.++|..|.+.||+.+++=+.|.|.=.|+..-++..+
T Consensus 59 ~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~~~~ 100 (130)
T PF08937_consen 59 YIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALKKGK 100 (130)
T ss_dssp THHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHHCCC
Confidence 567788999999999999999999999999999998877555
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.70 E-value=0.89 Score=22.44 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=10.0
Q ss_pred CCCCEEeccCCCCCc
Q 038390 188 KFPSTLNFSGLLKFR 202 (228)
Q Consensus 188 ~~L~~L~l~~c~~l~ 202 (228)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 567777777776554
No 91
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.92 E-value=0.58 Score=22.54 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=7.9
Q ss_pred ccccceeccccCCC
Q 038390 212 EHLLALRLLGTAIR 225 (228)
Q Consensus 212 ~~L~~L~l~~n~l~ 225 (228)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 56677777777654
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.97 E-value=1.4 Score=22.23 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=10.3
Q ss_pred ccccceeccccCCC
Q 038390 212 EHLLALRLLGTAIR 225 (228)
Q Consensus 212 ~~L~~L~l~~n~l~ 225 (228)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888775
No 93
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=60.84 E-value=0.35 Score=42.59 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=17.9
Q ss_pred CCCCEEeccCCCCCc----ccchhhhcCccccceeccccCC
Q 038390 188 KFPSTLNFSGLLKFR----LFPEIMGCIEHLLALRLLGTAI 224 (228)
Q Consensus 188 ~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~n~l 224 (228)
..++++++..|+... .+++.+..++.++.+.++.|.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 344555555533221 2334444555555555555554
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.07 E-value=6.3 Score=35.14 Aligned_cols=65 Identities=14% Similarity=0.005 Sum_probs=33.8
Q ss_pred CCCCcceEEccCCcccccc---hhcCCCCCCcEEeccCCCCCCccCcccCCC--CCCCEEeccCCCCCcc
Q 038390 139 NMKFLRQLLLDGTDIKGLL---LSIVLLSGIVQLNLKGCKNIECLPNFISAL--KFPSTLNFSGLLKFRL 203 (228)
Q Consensus 139 ~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l--~~L~~L~l~~c~~l~~ 203 (228)
+.+.+..++|++|++..+. .--...++|..|+|++|......-.++.++ ..|++|-+.||...+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4456667777777665432 222345677777777762211111122222 2467777777554443
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.20 E-value=16 Score=32.79 Aligned_cols=66 Identities=18% Similarity=0.087 Sum_probs=39.9
Q ss_pred cccCCccEEEccCCCC--CcccchhhcCCCCcceEEccCC--cccccchhcCCC--CCCcEEeccCCCCCCcc
Q 038390 114 IFMKSPKTLILSGCSK--LKKFPEIVGNMKFLRQLLLDGT--DIKGLLLSIVLL--SGIVQLNLKGCKNIECL 180 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~--l~~~p~~~~~l~~L~~L~l~~~--~i~~lp~~~~~l--~~L~~L~l~~~~~~~~l 180 (228)
-+.+.+..++|++|.. +..+.......+.|..|+|++| .+...+ ++..+ ..|+.|.+.||+..++.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccch
Confidence 3556677788888732 2333444456678888999988 443222 22222 24788888887755443
No 96
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=40.70 E-value=49 Score=29.32 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=34.5
Q ss_pred ChhHHHHHhhcceEEEEecCC--------CcchhccHHHHHHHHHhcC
Q 038390 5 SPAPSKVIEESRISVIVFLRN--------CASSTWCLDELVKIVEWKN 44 (228)
Q Consensus 5 ~~~~~~~i~~s~~~~~~~s~~--------y~~s~wcl~el~~i~~c~~ 44 (228)
-.+|++-|.++|.+|.|+++| -.+-.|-..|++--++|.+
T Consensus 655 dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~K 702 (832)
T KOG3678|consen 655 DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQK 702 (832)
T ss_pred cHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhcC
Confidence 468999999999999999988 3566788889999998877
No 97
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=31.86 E-value=29 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.618 Sum_probs=15.3
Q ss_pred HHhhcceEEEEecCCCcchhccH
Q 038390 11 VIEESRISVIVFLRNCASSTWCL 33 (228)
Q Consensus 11 ~i~~s~~~~~~~s~~y~~s~wcl 33 (228)
.|.+. -+|||++.+++..||-
T Consensus 4 ~i~~~--~vvvf~k~~~~~~~Cp 24 (90)
T cd03028 4 LIKEN--PVVLFMKGTPEEPRCG 24 (90)
T ss_pred hhccC--CEEEEEcCCCCCCCCc
Confidence 44444 4678899998888884
No 98
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=31.51 E-value=44 Score=20.24 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=15.4
Q ss_pred hcceEEEEecCCCcchhcc
Q 038390 14 ESRISVIVFLRNCASSTWC 32 (228)
Q Consensus 14 ~s~~~~~~~s~~y~~s~wc 32 (228)
++.+++|+||++-....|+
T Consensus 39 ~~~v~~iv~sp~g~~~~~~ 57 (59)
T cd00120 39 DAEVAVIVFSPSGKLYEFW 57 (59)
T ss_pred CCcEEEEEECCCCCccccc
Confidence 7788999999987666664
No 99
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=30.85 E-value=37 Score=19.29 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=8.9
Q ss_pred CCCCChhHHHHHhhc
Q 038390 1 GISISPAPSKVIEES 15 (228)
Q Consensus 1 g~~~~~~~~~~i~~s 15 (228)
+|.|+.++-+||+|.
T Consensus 3 AD~iT~SM~~ai~eT 17 (44)
T PF12344_consen 3 ADKITDSMQKAIDET 17 (44)
T ss_dssp -SS--HHHHHHHHHH
T ss_pred CccccHHHHHHHHHH
Confidence 467788888888764
No 100
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=29.40 E-value=40 Score=19.81 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=13.9
Q ss_pred hcceEEEEecCCCcchhcc
Q 038390 14 ESRISVIVFLRNCASSTWC 32 (228)
Q Consensus 14 ~s~~~~~~~s~~y~~s~wc 32 (228)
+..+++|+|+++-.--.||
T Consensus 32 ~~~v~~iv~~~~g~~~~f~ 50 (51)
T PF00319_consen 32 GVDVALIVFSPDGKLYTFP 50 (51)
T ss_dssp T-EEEEEEEETTSEEEEEE
T ss_pred CCeEEEEEECCCCCEEEec
Confidence 7899999999886554554
No 101
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=28.42 E-value=69 Score=20.63 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred hhHHHHHhhcceEEEEecCCCcc
Q 038390 6 PAPSKVIEESRISVIVFLRNCAS 28 (228)
Q Consensus 6 ~~~~~~i~~s~~~~~~~s~~y~~ 28 (228)
...+++|+++.++|.++..+|-+
T Consensus 44 ~~cl~~v~~cDifI~ilG~rYG~ 66 (83)
T PF13271_consen 44 EICLKEVDECDIFILILGNRYGS 66 (83)
T ss_pred HHHHHHHhhCCEEEEeeccccCC
Confidence 36789999999999999999976
No 102
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=23.22 E-value=79 Score=22.44 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=18.0
Q ss_pred CCCCChhHHHHHhhcceEEEEecC
Q 038390 1 GISISPAPSKVIEESRISVIVFLR 24 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~ 24 (228)
|..|-..+.++++.+..+||+|++
T Consensus 37 g~tiie~le~~~~~~~faIvl~Tp 60 (125)
T PF10137_consen 37 GQTIIEKLEEAADSVDFAIVLFTP 60 (125)
T ss_pred CCchHHHHHHHhccCCEEEEEEcc
Confidence 344555677777789999999994
No 103
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=22.96 E-value=38 Score=23.22 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=13.3
Q ss_pred CcchhccHHHHHHHHH
Q 038390 26 CASSTWCLDELVKIVE 41 (228)
Q Consensus 26 y~~s~wcl~el~~i~~ 41 (228)
|..|.||++.++++-.
T Consensus 68 l~~sk~~v~~m~e~~q 83 (105)
T PF11214_consen 68 LNDSKWYVDTMVELKQ 83 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688999999888874
No 104
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.18 E-value=20 Score=31.95 Aligned_cols=55 Identities=29% Similarity=0.381 Sum_probs=46.0
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEecc
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLK 172 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 172 (228)
...+.+.+|+| .+...|..+..++.++.+.+-.|.+..+|..++.+.++..+.+.
T Consensus 104 ~~~t~~s~s~~-~~~~~~~~vt~l~~~~~~~~~~~k~s~~~~li~k~~~~~i~r~~ 158 (763)
T KOG4231|consen 104 KTVTSLSLSGC-GLLVMPVEVTELPLLEKLCLEHNKLSVLPPLIGKLKNLKILRVD 158 (763)
T ss_pred eeeeecccccc-eeccChHHHHhhhhhhHHHHHHhhhccchhhhhhhhhHHHhccC
Confidence 44567889999 67888999999999999999999999999888888877776655
No 105
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=22.02 E-value=61 Score=20.74 Aligned_cols=19 Identities=11% Similarity=0.354 Sum_probs=14.5
Q ss_pred hcceEEEEecCCCcchhcc
Q 038390 14 ESRISVIVFLRNCASSTWC 32 (228)
Q Consensus 14 ~s~~~~~~~s~~y~~s~wc 32 (228)
++.+++|+||++-.--.||
T Consensus 39 ~~~v~lvv~sp~gk~~~f~ 57 (77)
T cd00265 39 DAEVALIIFSSSGKLYEFS 57 (77)
T ss_pred CCceeEEEEcCCCceEEec
Confidence 7899999999875444455
No 106
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.71 E-value=68 Score=34.73 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=21.6
Q ss_pred EccCCCCCcccch-hhcCCCCcceEEccCCcc
Q 038390 123 ILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDI 153 (228)
Q Consensus 123 ~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i 153 (228)
||++| .+..+|+ .|..+.+|+.|+|++|.+
T Consensus 1 DLSnN-~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNN-KISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCC-cCCccChHHhccCCCceEEEeeCCcc
Confidence 56776 6666654 577788888888888744
Done!