Query 038390
Match_columns 228
No_of_seqs 261 out of 2736
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 99.9 1.2E-26 4.1E-31 173.0 5.4 82 1-84 49-144 (176)
2 3ozi_A L6TR; plant TIR domain, 99.9 3.8E-26 1.3E-30 173.1 6.3 82 1-84 76-172 (204)
3 4fcg_A Uncharacterized protein 99.7 1.8E-17 6.1E-22 136.9 12.0 122 101-228 92-222 (328)
4 4fcg_A Uncharacterized protein 99.7 2.7E-17 9.3E-22 135.8 11.4 112 116-228 182-294 (328)
5 3e6j_A Variable lymphocyte rec 99.7 1.5E-15 5.2E-20 119.0 12.8 110 113-225 60-172 (229)
6 4b8c_D Glucose-repressible alc 99.6 4.4E-16 1.5E-20 141.1 8.2 111 113-226 220-330 (727)
7 4ezg_A Putative uncharacterize 99.6 2.3E-15 8E-20 115.2 11.0 110 113-225 84-194 (197)
8 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.6E-20 114.0 8.8 117 104-228 40-163 (168)
9 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.7E-20 113.4 8.0 112 114-228 21-136 (168)
10 2je0_A Acidic leucine-rich nuc 99.6 1.2E-15 4.2E-20 111.4 7.6 105 113-221 38-149 (149)
11 3m19_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 116.2 12.0 110 113-225 79-192 (251)
12 2v9t_B SLIT homolog 2 protein 99.6 7.3E-15 2.5E-19 114.5 11.3 112 113-225 52-165 (220)
13 2v70_A SLIT-2, SLIT homolog 2 99.6 5.8E-15 2E-19 115.0 10.7 111 113-225 53-166 (220)
14 1p9a_G Platelet glycoprotein I 99.6 7.6E-15 2.6E-19 119.1 11.7 113 113-228 73-188 (290)
15 2v9t_B SLIT homolog 2 protein 99.6 1.4E-14 4.7E-19 112.9 12.1 119 101-228 22-144 (220)
16 1w8a_A SLIT protein; signaling 99.6 9.7E-15 3.3E-19 111.4 11.0 116 101-225 19-139 (192)
17 2wfh_A SLIT homolog 2 protein 99.6 1.6E-14 5.4E-19 110.3 11.7 116 101-225 21-139 (193)
18 1dce_A Protein (RAB geranylger 99.6 4.9E-15 1.7E-19 130.7 9.8 106 118-228 442-549 (567)
19 4ezg_A Putative uncharacterize 99.6 7.9E-15 2.7E-19 112.2 9.6 120 101-228 55-175 (197)
20 4eco_A Uncharacterized protein 99.6 3E-15 1E-19 133.8 7.9 97 132-228 197-321 (636)
21 2xot_A Amphoterin-induced prot 99.6 1.6E-14 5.6E-19 120.5 11.8 112 115-228 62-179 (361)
22 1ozn_A Reticulon 4 receptor; N 99.6 2.1E-14 7.4E-19 115.7 12.1 114 113-228 101-217 (285)
23 1a9n_A U2A', U2A'; complex (nu 99.6 7.5E-15 2.6E-19 110.3 8.6 109 113-225 37-153 (176)
24 3rfs_A Internalin B, repeat mo 99.6 3.1E-14 1.1E-18 114.2 12.8 112 113-227 81-196 (272)
25 2z62_A TOLL-like receptor 4, v 99.6 2.2E-14 7.4E-19 115.2 11.4 112 113-227 48-164 (276)
26 1ogq_A PGIP-2, polygalacturona 99.6 2.6E-15 8.7E-20 123.1 6.0 113 113-225 72-187 (313)
27 3rfs_A Internalin B, repeat mo 99.6 5.3E-14 1.8E-18 112.9 13.2 112 113-228 59-173 (272)
28 3e6j_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 111.4 11.6 120 101-228 30-151 (229)
29 4g8a_A TOLL-like receptor 4; l 99.6 2E-14 7E-19 127.3 11.8 112 113-227 72-188 (635)
30 3vq2_A TLR4, TOLL-like recepto 99.6 2.4E-14 8.1E-19 126.9 11.8 113 113-227 52-168 (606)
31 3m19_A Variable lymphocyte rec 99.5 5.8E-14 2E-18 111.3 12.7 114 113-228 55-171 (251)
32 1p9a_G Platelet glycoprotein I 99.5 3.1E-14 1.1E-18 115.5 11.3 112 113-228 51-164 (290)
33 2o6q_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 112.3 12.8 113 113-228 81-197 (270)
34 2o6s_A Variable lymphocyte rec 99.5 7.7E-14 2.6E-18 107.4 12.6 110 113-225 48-161 (208)
35 2o6q_A Variable lymphocyte rec 99.5 6.6E-14 2.2E-18 112.2 12.7 110 113-225 105-218 (270)
36 4eco_A Uncharacterized protein 99.5 4E-15 1.4E-19 133.0 5.6 123 100-228 193-347 (636)
37 1ogq_A PGIP-2, polygalacturona 99.5 7.4E-15 2.5E-19 120.3 6.5 112 113-225 97-210 (313)
38 1ozn_A Reticulon 4 receptor; N 99.5 4.4E-14 1.5E-18 113.9 10.8 113 113-227 76-192 (285)
39 2o6s_A Variable lymphocyte rec 99.5 8.2E-14 2.8E-18 107.3 11.7 110 116-228 27-140 (208)
40 2v70_A SLIT-2, SLIT homolog 2 99.5 5.1E-14 1.8E-18 109.6 10.6 118 101-227 22-144 (220)
41 4g8a_A TOLL-like receptor 4; l 99.5 6E-14 2E-18 124.3 11.6 118 101-227 42-163 (635)
42 1h6u_A Internalin H; cell adhe 99.5 1.3E-13 4.6E-18 112.6 12.8 109 113-228 81-189 (308)
43 3rgz_A Protein brassinosteroid 99.5 3.9E-14 1.3E-18 129.2 10.6 116 113-228 438-555 (768)
44 3zyj_A Leucine-rich repeat-con 99.5 7.4E-14 2.5E-18 119.4 11.7 114 113-228 84-201 (440)
45 2xwt_C Thyrotropin receptor; s 99.5 2.6E-14 8.8E-19 112.4 8.0 113 113-227 51-171 (239)
46 3zyi_A Leucine-rich repeat-con 99.5 6.8E-14 2.3E-18 120.0 11.2 115 113-228 95-212 (452)
47 4ecn_A Leucine-rich repeat pro 99.5 8E-15 2.7E-19 134.8 5.7 110 115-227 489-610 (876)
48 3vq2_A TLR4, TOLL-like recepto 99.5 3.5E-14 1.2E-18 125.8 9.6 116 113-228 420-537 (606)
49 2o6r_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 102.8 12.0 117 101-226 18-138 (177)
50 2je0_A Acidic leucine-rich nuc 99.5 3.5E-14 1.2E-18 103.6 7.7 113 114-228 14-129 (149)
51 3zyj_A Leucine-rich repeat-con 99.5 9.7E-14 3.3E-18 118.7 11.6 114 113-228 156-271 (440)
52 1a9n_A U2A', U2A'; complex (nu 99.5 5.3E-14 1.8E-18 105.7 8.6 112 113-228 15-129 (176)
53 2z80_A TOLL-like receptor 2, v 99.5 2.4E-14 8.4E-19 118.9 7.4 111 113-225 72-187 (353)
54 3v47_A TOLL-like receptor 5B a 99.5 1.4E-13 4.9E-18 117.7 12.4 112 113-225 295-408 (455)
55 3zyi_A Leucine-rich repeat-con 99.5 1.2E-13 4.2E-18 118.4 11.7 114 113-228 167-282 (452)
56 2z80_A TOLL-like receptor 2, v 99.5 7.1E-14 2.4E-18 116.1 9.6 115 113-228 96-214 (353)
57 1h6u_A Internalin H; cell adhe 99.5 2E-13 6.8E-18 111.6 11.9 108 113-227 103-210 (308)
58 4ecn_A Leucine-rich repeat pro 99.5 3.4E-14 1.2E-18 130.6 8.1 113 113-228 511-635 (876)
59 2z66_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 112.4 10.5 113 113-226 122-237 (306)
60 2r9u_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 103.2 10.2 101 120-225 15-118 (174)
61 1xeu_A Internalin C; cellular 99.5 1.5E-13 5E-18 109.9 10.7 114 101-227 52-165 (263)
62 1xeu_A Internalin C; cellular 99.5 2.9E-13 9.9E-18 108.2 12.3 108 113-228 81-188 (263)
63 1h6t_A Internalin B; cell adhe 99.5 3E-13 1E-17 109.6 12.6 109 113-228 86-194 (291)
64 2wfh_A SLIT homolog 2 protein 99.5 1.6E-13 5.6E-18 104.7 10.3 104 120-228 13-118 (193)
65 1xku_A Decorin; proteoglycan, 99.5 1.3E-13 4.5E-18 113.4 10.5 109 115-228 169-279 (330)
66 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.9E-18 102.4 10.0 102 119-225 11-115 (170)
67 1h6t_A Internalin B; cell adhe 99.5 2.4E-13 8.3E-18 110.2 11.6 107 113-226 108-214 (291)
68 2id5_A Lingo-1, leucine rich r 99.5 1.6E-13 5.5E-18 118.3 10.9 113 113-226 52-166 (477)
69 3v47_A TOLL-like receptor 5B a 99.5 2E-13 6.7E-18 116.9 10.9 110 117-228 275-387 (455)
70 3rgz_A Protein brassinosteroid 99.5 1.4E-13 4.6E-18 125.6 10.2 116 113-228 414-531 (768)
71 2xwt_C Thyrotropin receptor; s 99.5 1E-13 3.4E-18 109.0 8.0 113 113-228 101-221 (239)
72 2z7x_B TOLL-like receptor 1, v 99.5 3.4E-13 1.2E-17 117.4 12.1 112 113-228 344-460 (520)
73 2z66_A Variable lymphocyte rec 99.5 6.1E-14 2.1E-18 114.1 6.7 114 113-228 97-215 (306)
74 2xot_A Amphoterin-induced prot 99.5 3.6E-13 1.2E-17 112.4 11.4 119 101-228 29-152 (361)
75 1ziw_A TOLL-like receptor 3; i 99.5 2.4E-13 8.3E-18 122.0 11.1 112 113-225 45-158 (680)
76 2z63_A TOLL-like receptor 4, v 99.5 2.7E-13 9.2E-18 119.1 11.1 112 113-227 48-164 (570)
77 1dce_A Protein (RAB geranylger 99.5 2.2E-13 7.6E-18 120.1 10.4 111 100-219 451-567 (567)
78 1xku_A Decorin; proteoglycan, 99.5 4.9E-13 1.7E-17 110.0 11.7 112 113-228 72-187 (330)
79 1w8a_A SLIT protein; signaling 99.5 2.1E-13 7.2E-18 103.9 8.8 104 120-227 11-117 (192)
80 4b8c_D Glucose-repressible alc 99.5 4.9E-14 1.7E-18 127.7 5.9 118 102-225 236-354 (727)
81 3o6n_A APL1; leucine-rich repe 99.4 4.2E-13 1.4E-17 112.8 11.0 112 113-227 65-180 (390)
82 2z81_A CD282 antigen, TOLL-lik 99.4 2E-13 6.7E-18 119.5 9.3 114 113-226 46-162 (549)
83 2z7x_B TOLL-like receptor 1, v 99.4 5E-13 1.7E-17 116.3 11.7 104 117-224 21-127 (520)
84 3j0a_A TOLL-like receptor 5; m 99.4 4.1E-13 1.4E-17 123.6 11.4 113 113-226 44-162 (844)
85 1wwl_A Monocyte differentiatio 99.4 6E-14 2E-18 114.8 5.2 112 114-227 118-243 (312)
86 3oja_B Anopheles plasmodium-re 99.4 4.7E-13 1.6E-17 118.8 11.1 112 113-227 71-186 (597)
87 2z62_A TOLL-like receptor 4, v 99.4 4.1E-13 1.4E-17 107.7 9.4 112 113-225 72-190 (276)
88 4fmz_A Internalin; leucine ric 99.4 1.5E-12 5.1E-17 107.6 12.9 110 113-228 84-193 (347)
89 1wwl_A Monocyte differentiatio 99.4 2E-13 6.9E-18 111.6 7.5 110 117-228 149-269 (312)
90 3t6q_A CD180 antigen; protein- 99.4 7.1E-13 2.4E-17 117.4 11.5 112 113-227 53-168 (606)
91 4glp_A Monocyte differentiatio 99.4 1.9E-13 6.4E-18 111.7 6.8 87 138-227 194-287 (310)
92 4fmz_A Internalin; leucine ric 99.4 1.7E-12 6E-17 107.2 12.7 109 113-227 62-170 (347)
93 3t6q_A CD180 antigen; protein- 99.4 6.9E-13 2.4E-17 117.5 10.8 113 113-227 77-194 (606)
94 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.4E-12 4.8E-17 114.7 12.4 104 117-225 52-159 (562)
95 1m9s_A Internalin B; cell inva 99.4 1.5E-12 5.2E-17 115.5 12.5 109 113-228 83-191 (605)
96 3o6n_A APL1; leucine-rich repe 99.4 6.4E-13 2.2E-17 111.7 9.5 113 113-228 41-157 (390)
97 1ds9_A Outer arm dynein; leuci 99.4 2.1E-15 7.1E-20 115.5 -5.3 116 101-225 36-153 (198)
98 2z81_A CD282 antigen, TOLL-lik 99.4 5.9E-13 2E-17 116.5 9.4 119 100-227 15-139 (549)
99 1m9s_A Internalin B; cell inva 99.4 1.3E-12 4.3E-17 116.1 11.6 109 113-228 105-213 (605)
100 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.3E-12 4.5E-17 114.9 11.5 112 113-228 373-489 (562)
101 3o53_A Protein LRIM1, AGAP0063 99.4 7.4E-13 2.5E-17 108.5 9.2 110 113-225 140-250 (317)
102 2z63_A TOLL-like receptor 4, v 99.4 9E-13 3.1E-17 115.7 10.2 112 113-225 417-531 (570)
103 3oja_B Anopheles plasmodium-re 99.4 1.2E-12 4E-17 116.2 10.9 110 113-225 95-205 (597)
104 2ft3_A Biglycan; proteoglycan, 99.4 4.4E-13 1.5E-17 110.4 7.3 114 113-228 143-280 (332)
105 2ft3_A Biglycan; proteoglycan, 99.4 1.9E-12 6.7E-17 106.5 11.1 111 113-228 74-188 (332)
106 2id5_A Lingo-1, leucine rich r 99.4 1.4E-12 4.7E-17 112.4 10.5 113 113-227 196-311 (477)
107 3bz5_A Internalin-J, INLJ; leu 99.4 1.5E-12 5.1E-17 112.0 10.6 100 113-223 60-159 (457)
108 3oja_A Leucine-rich immune mol 99.4 1.2E-12 4E-17 113.6 9.8 110 113-225 140-250 (487)
109 1ziw_A TOLL-like receptor 3; i 99.4 4.2E-12 1.4E-16 113.9 13.1 113 113-228 476-600 (680)
110 3oja_A Leucine-rich immune mol 99.4 1.3E-12 4.3E-17 113.4 9.3 113 113-228 116-230 (487)
111 2o6r_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 95.2 11.0 106 118-228 8-116 (177)
112 4glp_A Monocyte differentiatio 99.4 5.1E-13 1.7E-17 109.1 6.4 114 113-228 141-267 (310)
113 3h16_A TIR protein; bacteria T 99.4 2.8E-14 9.6E-19 105.1 -1.3 61 1-61 60-134 (154)
114 3bz5_A Internalin-J, INLJ; leu 99.4 4.7E-12 1.6E-16 108.9 12.0 105 113-227 81-185 (457)
115 3j0a_A TOLL-like receptor 5; m 99.4 2E-12 6.9E-17 119.0 9.9 120 101-227 15-138 (844)
116 3o53_A Protein LRIM1, AGAP0063 99.3 2.3E-12 7.8E-17 105.6 8.8 112 113-228 116-230 (317)
117 2ifg_A High affinity nerve gro 99.3 4.5E-12 1.5E-16 104.9 10.0 101 122-225 13-116 (347)
118 1o6v_A Internalin A; bacterial 99.3 2.4E-11 8.4E-16 104.5 12.3 58 113-173 239-296 (466)
119 1o6v_A Internalin A; bacterial 99.3 1.6E-11 5.4E-16 105.7 11.0 109 113-228 283-391 (466)
120 2ast_B S-phase kinase-associat 99.3 2.7E-12 9.1E-17 105.6 5.4 111 113-223 114-233 (336)
121 1jl5_A Outer protein YOPM; leu 99.3 2.1E-11 7.3E-16 104.7 11.0 104 117-228 131-253 (454)
122 3cvr_A Invasion plasmid antige 99.3 2.4E-11 8.3E-16 107.0 11.5 98 116-228 99-196 (571)
123 2ca6_A RAN GTPase-activating p 99.3 3.4E-12 1.2E-16 107.2 5.3 112 113-226 183-317 (386)
124 2r9u_A Variable lymphocyte rec 99.3 3.5E-11 1.2E-15 90.2 10.1 97 101-206 23-122 (174)
125 1ds9_A Outer arm dynein; leuci 99.2 3.9E-14 1.3E-18 108.4 -7.1 105 119-227 25-130 (198)
126 3cvr_A Invasion plasmid antige 99.2 2.7E-11 9.1E-16 106.8 9.8 78 140-225 159-243 (571)
127 3g06_A SSPH2 (leucine-rich rep 99.2 7E-11 2.4E-15 105.2 11.1 102 115-228 79-197 (622)
128 3g39_A Variable lymphocyte rec 99.2 9.2E-11 3.2E-15 87.5 10.1 94 100-202 19-115 (170)
129 2ast_B S-phase kinase-associat 99.2 8.2E-12 2.8E-16 102.6 4.5 111 113-223 89-206 (336)
130 3g06_A SSPH2 (leucine-rich rep 99.2 1.7E-10 5.8E-15 102.7 12.0 78 141-226 221-298 (622)
131 1jl5_A Outer protein YOPM; leu 99.2 1.2E-10 4.1E-15 100.0 10.1 101 117-228 111-211 (454)
132 4ay9_X Follicle-stimulating ho 99.1 8.2E-11 2.8E-15 97.6 8.2 120 100-227 19-144 (350)
133 4ay9_X Follicle-stimulating ho 99.1 1.3E-10 4.5E-15 96.4 7.5 114 113-228 100-218 (350)
134 2ca6_A RAN GTPase-activating p 99.1 3.7E-11 1.3E-15 100.8 2.9 109 117-226 159-288 (386)
135 2ifg_A High affinity nerve gro 99.0 5.5E-10 1.9E-14 92.3 8.7 83 144-228 11-96 (347)
136 3goz_A Leucine-rich repeat-con 99.0 1.7E-10 5.8E-15 96.1 5.1 33 142-174 139-177 (362)
137 3goz_A Leucine-rich repeat-con 99.0 3.7E-10 1.3E-14 94.0 4.3 107 117-226 80-210 (362)
138 3ub2_A TOLL/interleukin-1 rece 98.9 3.6E-11 1.2E-15 87.4 -2.8 43 1-43 51-93 (146)
139 1z7x_W Ribonuclease inhibitor; 98.9 1.9E-10 6.6E-15 98.3 1.3 110 113-225 280-411 (461)
140 1z7x_W Ribonuclease inhibitor; 98.9 4.1E-10 1.4E-14 96.2 2.5 109 115-225 254-383 (461)
141 3sb4_A Hypothetical leucine ri 98.8 1.5E-08 5.2E-13 83.1 9.0 85 140-228 225-313 (329)
142 3ogk_B Coronatine-insensitive 98.8 7.7E-09 2.6E-13 91.1 7.5 111 113-224 188-305 (592)
143 3un9_A NLR family member X1; l 98.7 6.9E-09 2.4E-13 86.8 4.1 109 114-225 123-252 (372)
144 1io0_A Tropomodulin; LRR prote 98.7 1.8E-08 6.1E-13 76.0 4.9 111 113-225 32-164 (185)
145 2j67_A TOLL like receptor 10; 98.7 2.2E-09 7.4E-14 80.5 -0.5 42 1-42 77-118 (178)
146 2p1m_B Transport inhibitor res 98.6 5.3E-09 1.8E-13 92.1 1.6 108 115-222 128-245 (594)
147 1t3g_A X-linked interleukin-1 98.6 6.3E-09 2.2E-13 76.6 1.7 43 1-43 54-97 (159)
148 2js7_A Myeloid differentiation 98.6 5.8E-09 2E-13 76.9 0.5 42 1-42 57-99 (160)
149 1fyx_A TOLL-like receptor 2; b 98.6 7.7E-09 2.6E-13 75.3 0.2 41 1-41 47-87 (149)
150 3ogk_B Coronatine-insensitive 98.5 1.3E-07 4.5E-12 83.2 6.9 84 113-198 216-303 (592)
151 3un9_A NLR family member X1; l 98.5 4.4E-08 1.5E-12 81.9 3.4 107 117-226 101-225 (372)
152 2p1m_B Transport inhibitor res 98.4 1.3E-07 4.6E-12 83.1 4.7 108 114-222 102-221 (594)
153 3e4g_A ATP synthase subunit S, 98.4 2.1E-07 7.1E-12 69.4 4.2 87 117-204 61-155 (176)
154 3rw6_A Nuclear RNA export fact 98.4 3.2E-07 1.1E-11 73.1 5.1 79 138-218 167-257 (267)
155 3e4g_A ATP synthase subunit S, 98.3 3.8E-07 1.3E-11 68.0 4.5 85 141-225 61-153 (176)
156 3sb4_A Hypothetical leucine ri 98.3 1.5E-06 5E-11 71.2 8.3 99 116-219 225-328 (329)
157 3rw6_A Nuclear RNA export fact 98.3 3.2E-07 1.1E-11 73.1 2.7 79 114-194 167-257 (267)
158 2ra8_A Uncharacterized protein 98.2 8.3E-07 2.8E-11 73.9 4.3 63 162-225 250-320 (362)
159 2ra8_A Uncharacterized protein 98.1 3.6E-06 1.2E-10 70.0 6.7 110 113-225 168-292 (362)
160 1io0_A Tropomodulin; LRR prote 98.0 4.8E-06 1.7E-10 62.5 4.0 91 133-225 28-136 (185)
161 4fdw_A Leucine rich hypothetic 97.9 8.9E-05 3.1E-09 62.4 10.3 104 117-227 248-360 (401)
162 4fdw_A Leucine rich hypothetic 97.6 0.00026 8.8E-09 59.6 9.0 105 113-220 176-308 (401)
163 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00044 1.5E-08 52.3 5.5 109 114-223 38-168 (197)
164 4gt6_A Cell surface protein; l 96.9 0.0071 2.4E-07 50.4 10.2 103 113-222 261-367 (394)
165 3rfe_A Platelet glycoprotein I 96.7 0.0031 1.1E-07 44.2 5.6 53 144-199 11-66 (130)
166 4gt6_A Cell surface protein; l 96.7 0.0058 2E-07 50.9 8.2 105 113-225 284-391 (394)
167 4h09_A Hypothetical leucine ri 96.4 0.025 8.5E-07 46.6 10.3 102 113-220 236-341 (379)
168 3rfe_A Platelet glycoprotein I 96.4 0.0046 1.6E-07 43.3 4.9 52 121-175 12-66 (130)
169 4fs7_A Uncharacterized protein 96.3 0.011 3.9E-07 49.1 7.7 101 113-222 272-376 (394)
170 4h09_A Hypothetical leucine ri 96.2 0.02 6.7E-07 47.3 8.5 94 113-212 259-356 (379)
171 4fs7_A Uncharacterized protein 96.0 0.033 1.1E-06 46.2 9.0 97 113-216 293-392 (394)
172 1pgv_A TMD-1, tropomodulin TMD 94.3 0.023 8E-07 42.7 2.7 87 134-222 34-136 (197)
173 3hyn_A Putative signal transdu 87.2 0.41 1.4E-05 35.2 2.9 42 3-44 68-110 (189)
174 3p57_A Myocyte-specific enhanc 69.8 2.4 8.2E-05 27.3 1.9 28 14-41 39-66 (90)
175 1egw_A MADS box transcription 49.8 9 0.00031 23.8 1.9 27 14-40 39-65 (77)
176 1eiw_A Hypothetical protein MT 41.5 11 0.00037 25.2 1.5 35 10-44 34-68 (111)
177 1q2j_A MU-conotoxin SMIIIA; HE 40.9 7.8 0.00027 18.2 0.5 9 24-32 7-15 (26)
178 2pp6_A Gifsy-2 prophage ATP-bi 39.7 12 0.00041 24.5 1.4 22 6-27 42-63 (102)
179 1mnm_A Protein (MCM1 transcrip 25.6 27 0.00092 22.8 1.3 19 14-32 55-73 (100)
180 2lz0_A Uncharacterized protein 24.9 68 0.0023 20.6 3.2 44 152-197 7-52 (100)
181 1hbx_A SRF, serum response fac 21.0 69 0.0024 20.5 2.5 19 14-32 49-67 (92)
182 1k6o_B SRF, serum response fac 20.3 75 0.0026 20.8 2.6 19 14-32 48-66 (103)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.93 E-value=1.2e-26 Score=173.02 Aligned_cols=82 Identities=33% Similarity=0.503 Sum_probs=67.4
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC--------------chhhhhccccHHHHHHHHHHhh
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN--------------TSLVRKHIGSFQEAIVNHEEVL 66 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~--------------ps~vr~q~g~f~~af~~~~~~~ 66 (228)
|+.|++++.+|||+||++|||||+|||+|.||++||++|++|++ |++||+|+|.||+||.+++++
T Consensus 49 G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~- 127 (176)
T 3jrn_A 49 GQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR- 127 (176)
T ss_dssp ----------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT-
T ss_pred CCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc-
Confidence 78999999999999999999999999999999999999999975 999999999999999999887
Q ss_pred cchhhhHHhHHHHHhhcc
Q 038390 67 KGEYRKGAKMERRFARGT 84 (228)
Q Consensus 67 ~~~~~kl~~W~~al~~~~ 84 (228)
...+++++|+.||++..
T Consensus 128 -~~~~~~~~Wr~AL~~va 144 (176)
T 3jrn_A 128 -EDPEKVLKWRQALTNFA 144 (176)
T ss_dssp -SCHHHHHHHHHHHHHHT
T ss_pred -cCHHHHHHHHHHHHHHh
Confidence 45679999999999844
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.92 E-value=3.8e-26 Score=173.09 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=76.1
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC---------------chhhhhccccHHHHHHHHHHh
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN---------------TSLVRKHIGSFQEAIVNHEEV 65 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~---------------ps~vr~q~g~f~~af~~~~~~ 65 (228)
|+.|++++++|||+||++|||||+|||+|.||++||++|++|++ |++||+|+|.||+||.+++++
T Consensus 76 G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~ 155 (204)
T 3ozi_A 76 GKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANK 155 (204)
T ss_dssp GGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999962 999999999999999999887
Q ss_pred hcchhhhHHhHHHHHhhcc
Q 038390 66 LKGEYRKGAKMERRFARGT 84 (228)
Q Consensus 66 ~~~~~~kl~~W~~al~~~~ 84 (228)
+. .+++++|+.||++..
T Consensus 156 ~~--~~~v~~Wr~AL~~va 172 (204)
T 3ozi_A 156 FD--GQTIQNWKDALKKVG 172 (204)
T ss_dssp SC--HHHHHHHHHHHHHHH
T ss_pred hC--HHHHHHHHHHHHHHh
Confidence 64 358999999999854
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.8e-17 Score=136.88 Aligned_cols=122 Identities=16% Similarity=0.290 Sum_probs=96.1
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCcc
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECL 180 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l 180 (228)
.++.++.. ++.+++|++|++++| .+..+|..++.+++|++|++++|.+..+|..++.+++|++|++++|+..+.+
T Consensus 92 ~l~~lp~~----l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~ 166 (328)
T 4fcg_A 92 PLPQFPDQ----AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166 (328)
T ss_dssp CCSSCCSC----GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred CchhcChh----hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCcccc
Confidence 45566666 788888888888888 5668888888888888888888888888888888888888888888777777
Q ss_pred CcccCC---------CCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 181 PNFISA---------LKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 181 p~~~~~---------l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|..++. +++|++|++++ +.++.+|..++.+++|++|++++|.++++|
T Consensus 167 p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~ 222 (328)
T 4fcg_A 167 PEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIANLQNLKSLKIRNSPLSALG 222 (328)
T ss_dssp CSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred ChhHhhccchhhhccCCCCCEEECcC-CCcCcchHhhcCCCCCCEEEccCCCCCcCc
Confidence 776554 77788888877 456677777777777777777777777665
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=2.7e-17 Score=135.78 Aligned_cols=112 Identities=20% Similarity=0.303 Sum_probs=97.3
Q ss_pred cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNF 195 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 195 (228)
+++|++|++++| .+..+|..++.+++|++|++++|.+..+|..++.+++|+.|++++|+..+.+|..++.+++|++|++
T Consensus 182 l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp STTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 777788888877 5667888888889999999999998888888889999999999998888888888999999999999
Q ss_pred cCCCCCcccchhhhcCccccceeccccCCC-CCC
Q 038390 196 SGLLKFRLFPEIMGCIEHLLALRLLGTAIR-GLP 228 (228)
Q Consensus 196 ~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~-~lP 228 (228)
++|+..+.+|..++.+++|+.|++++|++. .+|
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 998888899988999999999999998765 555
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=1.5e-15 Score=119.05 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=71.3
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 190 (228)
+..+++|++|++++| .++.+| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++| .++.+|..+..+++|
T Consensus 60 ~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L 137 (229)
T 3e6j_A 60 FDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHL 137 (229)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTC
T ss_pred hhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCCCC
Confidence 556667777777766 455554 3356667777777777777666544 466677777777764 355666666677777
Q ss_pred CEEeccCCCCCcccc-hhhhcCccccceeccccCCC
Q 038390 191 STLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~ 225 (228)
++|++++ +.++.+| ..+..+++|+.|++++|.+.
T Consensus 138 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 138 THLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 7777776 4566665 34666677777777777654
No 6
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=4.4e-16 Score=141.13 Aligned_cols=111 Identities=20% Similarity=0.187 Sum_probs=101.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..++.|+.|+|++| .+..+|..+..+++|++|+|++|.++.+|..++.+++|++|+|++|. ++.+|..++++++|++
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCE
Confidence 788899999999999 57789988889999999999999999999999999999999999975 6689999999999999
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 226 (228)
|+|++ +.++.+|..++.|++|+.|+|++|.|++
T Consensus 298 L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 298 FYFFD-NMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EECCS-SCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EECCC-CCCCccChhhhcCCCccEEeCCCCccCC
Confidence 99999 5788999999999999999999999985
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=2.3e-15 Score=115.17 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=59.2
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc-cchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG-LLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|++|++++|......|..++.+++|++|++++|.+.. .|..++.+++|+.|++++|..++.+| .+..+++|+
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 4555556666666553222345555556666666666665553 34455556666666666554345554 355556666
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
+|++++ +.++.++ .+..+++|+.|++++|.|.
T Consensus 163 ~L~l~~-n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 163 SLNIQF-DGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EEECTT-BCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred EEECCC-CCCcChH-HhccCCCCCEEEeeCcccC
Confidence 666665 3444444 4555566666666666554
No 8
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.1e-15 Score=114.01 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=102.4
Q ss_pred cccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc-cchhcCCCCCCcEEeccCCCCCCccC-
Q 038390 104 SSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG-LLLSIVLLSGIVQLNLKGCKNIECLP- 181 (228)
Q Consensus 104 ~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~lp- 181 (228)
.++.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.+.. +|..+..+++|++|++++| .++.+|
T Consensus 40 ~i~~~----~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 112 (168)
T 2ell_A 40 KIEGL----TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDIST 112 (168)
T ss_dssp BCSSC----CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGG
T ss_pred hHHHH----HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchh
Confidence 56665 789999999999999 47666 778899999999999999998 7777788999999999997 467766
Q ss_pred -cccCCCCCCCEEeccCCCCCcccch----hhhcCccccceeccccCCCCCC
Q 038390 182 -NFISALKFPSTLNFSGLLKFRLFPE----IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 182 -~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~~n~l~~lP 228 (228)
..+..+++|++|++++ +.+..+|. .++.+++|+.|++++|.+.++|
T Consensus 113 ~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp GGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred HHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 6789999999999999 57777776 7899999999999999998876
No 9
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.4e-15 Score=113.38 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=97.9
Q ss_pred cccCCccEEEccCCCCCc--ccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 114 IFMKSPKTLILSGCSKLK--KFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~l~--~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
...++|++|++++|. +. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.....+|..+.++++|+
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 345789999999995 55 8898889999999999999999988 7889999999999999865444787777899999
Q ss_pred EEeccCCCCCcccc--hhhhcCccccceeccccCCCCCC
Q 038390 192 TLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|++++ +.++.+| ..++.+++|+.|++++|.++.+|
T Consensus 99 ~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 99 HLNLSG-NKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp EEECBS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred EEeccC-CccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence 999999 5788876 78999999999999999998765
No 10
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.2e-15 Score=111.41 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=75.5
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc-cchhcCCCCCCcEEeccCCCCCCccC--cccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG-LLLSIVLLSGIVQLNLKGCKNIECLP--NFISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~ 189 (228)
+..+++|++|++++| .+..+ ..++.+++|++|++++|.+.. +|..++.+++|++|++++|. ++.+| ..++.+++
T Consensus 38 ~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~ 114 (149)
T 2je0_A 38 TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLEN 114 (149)
T ss_dssp CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTT
T ss_pred HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCC
Confidence 677778888888877 55555 567777788888888887776 66666667788888888764 55543 66777788
Q ss_pred CCEEeccCCCCCcccch----hhhcCccccceeccc
Q 038390 190 PSTLNFSGLLKFRLFPE----IMGCIEHLLALRLLG 221 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~----~~~~l~~L~~L~l~~ 221 (228)
|++|++++ +.++.+|. .++.+++|+.|++++
T Consensus 115 L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 115 LKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEeCcC-CcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888877 45666654 577777888877753
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=8.2e-15 Score=116.24 Aligned_cols=110 Identities=21% Similarity=0.326 Sum_probs=54.5
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+++|++|++++| .+..+| ..++.+++|++|++++|.++.+|.. +..+++|+.|++++| .++.+|. .++.+++
T Consensus 79 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcC
Confidence 344555555555555 233332 3345555555555555555555443 345555555555554 2334433 3455555
Q ss_pred CCEEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~ 225 (228)
|++|++++ +.++.+|. .+..+++|+.|++++|.++
T Consensus 157 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 55555555 34444432 4555555555555555543
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=7.3e-15 Score=114.46 Aligned_cols=112 Identities=17% Similarity=0.117 Sum_probs=91.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|++|+|++|......|..+..+++|++|+|++|.++.+|.. +..+++|+.|++++|......|..+..+++|+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 77888999999999844344478899999999999999999988876 57899999999999754443466788999999
Q ss_pred EEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390 192 TLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~ 225 (228)
+|++++ +.++.+|. .+..+++|+.|++++|.+.
T Consensus 132 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 132 LLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999 66777764 5888999999999999764
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=5.8e-15 Score=115.01 Aligned_cols=111 Identities=13% Similarity=0.141 Sum_probs=94.3
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 190 (228)
+..+++|++|++++| .+..++ ..+..+++|++|++++|.+..+|.. +..+++|++|++++|......|..+..+++|
T Consensus 53 ~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 53 FKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp GGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 678999999999998 566655 4789999999999999999988664 8899999999999976444447788999999
Q ss_pred CEEeccCCCCCccc-chhhhcCccccceeccccCCC
Q 038390 191 STLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 191 ~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~ 225 (228)
++|++++ +.++.+ |..++.+++|+.|++++|.++
T Consensus 132 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 132 RLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999999 566666 788999999999999999875
No 14
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=7.6e-15 Score=119.06 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=75.9
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L 190 (228)
...+++|++|++++| .+..+|..+..+++|++|++++|.++.+| ..+..+++|+.|++++|. ++.+|. .+..+++|
T Consensus 73 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 73 DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKL 150 (290)
T ss_dssp CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCC
Confidence 356667777777776 56666766677777777777777777665 346677777777777753 445544 34667777
Q ss_pred CEEeccCCCCCcccchh-hhcCccccceeccccCCCCCC
Q 038390 191 STLNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~lP 228 (228)
+.|++++ +.++.+|.. +..+++|+.|++++|.|+.+|
T Consensus 151 ~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 151 EKLSLAN-NNLTELPAGLLNGLENLDTLLLQENSLYTIP 188 (290)
T ss_dssp CEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CEEECCC-CcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence 7777777 556666643 466777777777777777665
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=1.4e-14 Score=112.89 Aligned_cols=119 Identities=20% Similarity=0.184 Sum_probs=100.3
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCC
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIE 178 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~ 178 (228)
.++.+|.. +. ++|+.|++++| .+..+| ..+..+++|++|++++|.+..+ |..+..+++|++|++++| .++
T Consensus 22 ~l~~iP~~----l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~ 93 (220)
T 2v9t_B 22 GLTEIPTN----LP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KIT 93 (220)
T ss_dssp CCSSCCSS----CC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCC
T ss_pred CcCcCCCc----cC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCC
Confidence 46666654 33 68999999999 566665 4789999999999999999988 678999999999999996 467
Q ss_pred ccCcc-cCCCCCCCEEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390 179 CLPNF-ISALKFPSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 179 ~lp~~-~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
.+|.. +..+++|++|++++ +.++.+ |..++.+++|+.|+|++|.|+.+|
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 78765 68899999999999 566666 578999999999999999998765
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=9.7e-15 Score=111.37 Aligned_cols=116 Identities=19% Similarity=0.241 Sum_probs=96.2
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccch--hhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCC
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPE--IVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNI 177 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~ 177 (228)
.++.+|.. +. .+|++|++++| .+..++. .++.+++|++|++++|.++.+ |..++.+++|++|++++|. +
T Consensus 19 ~l~~ip~~----~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l 90 (192)
T 1w8a_A 19 GLKEIPRD----IP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-I 90 (192)
T ss_dssp CCSSCCSC----CC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-C
T ss_pred CcCcCccC----CC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-C
Confidence 45566654 43 38999999999 6777765 389999999999999999988 6789999999999999975 5
Q ss_pred Ccc-CcccCCCCCCCEEeccCCCCCc-ccchhhhcCccccceeccccCCC
Q 038390 178 ECL-PNFISALKFPSTLNFSGLLKFR-LFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 178 ~~l-p~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
+.+ |..+.++++|++|++++ +.++ ..|..++.+++|++|++++|.++
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 555 45588999999999999 5566 45788999999999999999886
No 17
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=110.34 Aligned_cols=116 Identities=20% Similarity=0.267 Sum_probs=99.2
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCc
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIEC 179 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~ 179 (228)
.++++|.. + .++|++|++++| .+..+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|. ++.
T Consensus 21 ~l~~ip~~----~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~ 92 (193)
T 2wfh_A 21 GLKVLPKG----I--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRC 92 (193)
T ss_dssp CCSSCCSC----C--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCB
T ss_pred CCCcCCCC----C--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCE
Confidence 45666653 3 368999999998 688999999999999999999999999865 58999999999999975 555
Q ss_pred cC-cccCCCCCCCEEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390 180 LP-NFISALKFPSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 180 lp-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~ 225 (228)
+| ..+..+++|++|++++ +.++.+|. .+..+++|+.|++++|.+.
T Consensus 93 i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred eCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCee
Confidence 54 5789999999999999 67888886 5889999999999999864
No 18
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=4.9e-15 Score=130.71 Aligned_cols=106 Identities=14% Similarity=0.139 Sum_probs=91.9
Q ss_pred CccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 038390 118 SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSG 197 (228)
Q Consensus 118 ~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 197 (228)
.|+.|++++| .+..+|. ++.+++|+.|++++|.++.+|..++.+++|+.|+|++| .++.+| .++++++|+.|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 5888999998 6777887 88899999999999999999999999999999999986 466688 789999999999998
Q ss_pred CCCCccc--chhhhcCccccceeccccCCCCCC
Q 038390 198 LLKFRLF--PEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 198 c~~l~~l--p~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|.++.+ |..++.+++|+.|++++|.|+++|
T Consensus 518 -N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 518 -NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred -CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 567766 888999999999999999987654
No 19
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=7.9e-15 Score=112.19 Aligned_cols=120 Identities=12% Similarity=0.155 Sum_probs=103.7
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc-cchhcCCCCCCcEEeccCCCCCCc
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG-LLLSIVLLSGIVQLNLKGCKNIEC 179 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~ 179 (228)
.++.++. +..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..++.+++|++|++++|.....
T Consensus 55 ~i~~l~~-----l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~ 127 (197)
T 4ezg_A 55 NVTDLTG-----IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127 (197)
T ss_dssp CCSCCTT-----GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG
T ss_pred CccChHH-----HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH
Confidence 4445564 889999999999999 666665 68889999999999999986 677899999999999999876556
Q ss_pred cCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 180 LPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 180 lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
.|..++.+++|++|++++|..++.+| .++.+++|+.|++++|.++++|
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 78889999999999999966588887 6889999999999999998764
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.57 E-value=3e-15 Score=133.83 Aligned_cols=97 Identities=15% Similarity=0.233 Sum_probs=80.6
Q ss_pred ccchhhcCCCCcceEEccCCcccc------------------cchhcC--CCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 132 KFPEIVGNMKFLRQLLLDGTDIKG------------------LLLSIV--LLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 132 ~~p~~~~~l~~L~~L~l~~~~i~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
.+|+.++++++|++|++++|.++. +|..++ ++++|++|++++|...+.+|..++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 478888888999999999998887 888888 899999999998887788888888888999
Q ss_pred EEeccCCCCCc--ccchhhhcC------ccccceeccccCCCCCC
Q 038390 192 TLNFSGLLKFR--LFPEIMGCI------EHLLALRLLGTAIRGLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~--~lp~~~~~l------~~L~~L~l~~n~l~~lP 228 (228)
+|++++|..++ .+|..++.+ ++|++|++++|.++.+|
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 99998865355 588877776 88888888888887766
No 21
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.57 E-value=1.6e-14 Score=120.51 Aligned_cols=112 Identities=21% Similarity=0.181 Sum_probs=93.5
Q ss_pred ccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 115 FMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
.+++|++|+|++| .+..++ ..+..+++|++|+|++|.++.+|. .+..+++|+.|+|++|......|..+..+++|+.
T Consensus 62 ~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCE
Confidence 8899999999998 566655 578999999999999999998866 5788999999999997643334677899999999
Q ss_pred EeccCCCCCcccchhh----hcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIM----GCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~----~~l~~L~~L~l~~n~l~~lP 228 (228)
|+|++ +.++.+|..+ +.+++|+.|+|++|.|+.+|
T Consensus 141 L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 141 LYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp EECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred EECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 99999 6788888764 67899999999999998876
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=2.1e-14 Score=115.74 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=63.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L 190 (228)
+..+++|++|++++|...+..|..+..+++|++|++++|.+..+|.. ++.+++|+.|++++| .++.+|. .+..+++|
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCcccc
Confidence 44555666666666532222344555566666666666666655443 555666666666664 3444443 35556666
Q ss_pred CEEeccCCCCCcc-cchhhhcCccccceeccccCCCCCC
Q 038390 191 STLNFSGLLKFRL-FPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 191 ~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+.|++++| .+.. .|..++.+++|+.|++++|.++++|
T Consensus 180 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 180 DRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 66666663 3333 3555666666666666666665543
No 23
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=7.5e-15 Score=110.34 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=87.8
Q ss_pred ccccC-CccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhc-CCCCCCcEEeccCCCCCCccCc--ccCCCC
Q 038390 113 LIFMK-SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSI-VLLSGIVQLNLKGCKNIECLPN--FISALK 188 (228)
Q Consensus 113 ~~~l~-~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~--~~~~l~ 188 (228)
+..+. +|++|++++| .+..+ +.++.+++|++|++++|.++.+|+.+ +.+++|++|++++|. ++.+|. .+..++
T Consensus 37 ~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLK 113 (176)
T ss_dssp GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCT
T ss_pred hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCC
Confidence 55555 8999999988 56666 56788889999999999998887655 788899999999864 677776 788888
Q ss_pred CCCEEeccCCCCCcccchh----hhcCccccceeccccCCC
Q 038390 189 FPSTLNFSGLLKFRLFPEI----MGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~lp~~----~~~l~~L~~L~l~~n~l~ 225 (228)
+|+.|++++ +.+..+|.. ++.+++|+.|++++|.+.
T Consensus 114 ~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 114 SLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999998 567778874 888899999999888653
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=3.1e-14 Score=114.23 Aligned_cols=112 Identities=23% Similarity=0.395 Sum_probs=57.9
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+++|++|++++| .+..+| ..++.+++|++|++++|.+..+|.. ++.+++|++|++++|. ++.+|. .++.+++
T Consensus 81 l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 81 LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTN 158 (272)
T ss_dssp GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCcc
Confidence 455555666666655 333333 3345555666666666655555443 4555556666665543 334433 2355555
Q ss_pred CCEEeccCCCCCcccch-hhhcCccccceeccccCCCCC
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++|++++| .++.+|. .++.+++|+.|++++|.++++
T Consensus 159 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 159 LTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 555555552 3444432 345555555555555555543
No 25
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=2.2e-14 Score=115.22 Aligned_cols=112 Identities=23% Similarity=0.301 Sum_probs=80.0
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+.++++|++|++++| .+..++ ..+..+++|++|++++|.+..++ ..+..+++|++|++++|. +..++. .++.+++
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT 125 (276)
T ss_dssp TTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred hccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCC
Confidence 667778888888887 454444 46777888888888888777765 457777888888887764 444433 5777788
Q ss_pred CCEEeccCCCCCcc--cchhhhcCccccceeccccCCCCC
Q 038390 190 PSTLNFSGLLKFRL--FPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 190 L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++|++++ +.++. +|..++.+++|++|++++|.++++
T Consensus 126 L~~L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 126 LKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCEEECcC-CccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 88888887 44544 677777788888888888877654
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.56 E-value=2.6e-15 Score=123.07 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=80.5
Q ss_pred ccccCCccEEEccC-CCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390 113 LIFMKSPKTLILSG-CSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~-~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 190 (228)
+.++++|++|++++ |...+.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..++.+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 77777778888774 5444567777777777777777777776 567777777777777777765444667777777777
Q ss_pred CEEeccCCCCCcccchhhhcCc-cccceeccccCCC
Q 038390 191 STLNFSGLLKFRLFPEIMGCIE-HLLALRLLGTAIR 225 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~n~l~ 225 (228)
++|++++|..-..+|..++.++ +|+.|++++|.++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 7777777433236777777776 7777777777665
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=5.3e-14 Score=112.87 Aligned_cols=112 Identities=21% Similarity=0.382 Sum_probs=96.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L 190 (228)
+..+++|++|++++| .+..++ .++.+++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|. .++.+++|
T Consensus 59 l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 59 IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNL 135 (272)
T ss_dssp GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTC
T ss_pred cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCC
Confidence 889999999999999 566665 688999999999999999988765 6899999999999975 555654 57899999
Q ss_pred CEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390 191 STLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++|++++| .++.+|. .++.+++|+.|++++|.++++|
T Consensus 136 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 136 TYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 99999994 6777775 5689999999999999998765
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=3.2e-14 Score=111.41 Aligned_cols=120 Identities=19% Similarity=0.253 Sum_probs=102.3
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCc
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIEC 179 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~ 179 (228)
.++.+|.. + .++|++|++++|...+..|..+..+++|++|++++|.++.+|.. +..+++|+.|++++| .++.
T Consensus 30 ~l~~ip~~----~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~ 102 (229)
T 3e6j_A 30 RHASVPAG----I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTV 102 (229)
T ss_dssp CCSSCCSC----C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred CcCccCCC----C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCc
Confidence 45666653 3 38899999999954444578899999999999999999999865 689999999999997 4667
Q ss_pred cCc-ccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 180 LPN-FISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 180 lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|. .+..+++|++|++++ +.++.+|..++.+++|+.|++++|.|+.+|
T Consensus 103 l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp CCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred cChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCCcCCccC
Confidence 765 468999999999999 678899999999999999999999998775
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.55 E-value=2e-14 Score=127.30 Aligned_cols=112 Identities=24% Similarity=0.326 Sum_probs=92.8
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+.++++|++|+|++| .+..+| ..|.++++|++|+|++|.++.+|. .+.++++|++|++++|. ++.+|. .++++++
T Consensus 72 f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 72 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT 149 (635)
T ss_dssp TTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTT
T ss_pred HhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcc
Confidence 788899999999998 566665 468889999999999999998875 47889999999999874 566654 5889999
Q ss_pred CCEEeccCCCCCc--ccchhhhcCccccceeccccCCCCC
Q 038390 190 PSTLNFSGLLKFR--LFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 190 L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++|++++ +.++ .+|..++.+++|++|++++|.|+++
T Consensus 150 L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 150 LKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCeecccc-CccccCCCchhhccchhhhhhcccCcccccc
Confidence 99999998 4554 4578888999999999999988754
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=2.4e-14 Score=126.89 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=89.8
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccC-cccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLP-NFISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~ 189 (228)
+.++++|++|++++| .+..+ |..++++++|++|++++|.+..+ |..++++++|++|++++|. +..+| ..++++++
T Consensus 52 ~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 52 FSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLIT 129 (606)
T ss_dssp TTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTT
T ss_pred ccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCC
Confidence 778888999999988 45444 66788888999999999888877 6778888999999998875 44444 67888889
Q ss_pred CCEEeccCCCCCc-ccchhhhcCccccceeccccCCCCC
Q 038390 190 PSTLNFSGLLKFR-LFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 190 L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++|++++|.... .+|..++.+++|++|++++|.++++
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 9999998854333 5788888889999999998888754
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=5.8e-14 Score=111.33 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=97.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcc-cCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNF-ISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L 190 (228)
+..+++|++|++++|...+..|..+..+++|++|++++|.++.+|. .+..+++|++|++++| .++.+|.. +..+++|
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred hcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcc
Confidence 7889999999999994444445668999999999999999998875 4689999999999997 46677664 6889999
Q ss_pred CEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390 191 STLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++|++++ +.++.+|. .++.+++|+.|++++|.|+.+|
T Consensus 134 ~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 134 KELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 9999999 57888876 6899999999999999998765
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=3.1e-14 Score=115.47 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=96.2
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC-cccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP-NFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~ 191 (228)
+..+++|++|++++| .+..+|.. +.+++|++|++++|.+..+|..+..+++|++|++++|. ++.+| ..+..+++|+
T Consensus 51 ~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~ 127 (290)
T 1p9a_G 51 LMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQ 127 (290)
T ss_dssp GTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCC
T ss_pred hhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCC
Confidence 778899999999998 67777764 78899999999999999999989999999999999964 56665 5688999999
Q ss_pred EEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390 192 TLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|++++ +.++.+|. .+..+++|+.|++++|.|+.+|
T Consensus 128 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 128 ELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp EEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred EEECCC-CCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 999999 56777775 5688999999999999998876
No 33
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=6.3e-14 Score=112.29 Aligned_cols=113 Identities=22% Similarity=0.316 Sum_probs=79.8
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcc-cCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNF-ISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~ 189 (228)
+..+++|++|++++| .+..+| ..+..+++|++|++++|.+..+|. .++.+++|++|++++|. ++.+|.. +..+++
T Consensus 81 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 81 FKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTS 158 (270)
T ss_dssp TSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcc
Confidence 356777777777777 454444 445677777777777777777654 35777888888888764 5556543 677888
Q ss_pred CCEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|+.|++++ +.++.+|. .+..+++|++|++++|.++.+|
T Consensus 159 L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 159 LKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cceeEecC-CcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 88888887 45666664 4777888888888888887665
No 34
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=7.7e-14 Score=107.41 Aligned_cols=110 Identities=19% Similarity=0.295 Sum_probs=89.6
Q ss_pred ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+++|++|++++| .+..+|. .+..+++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|. .+..+++
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 125 (208)
T 2o6s_A 48 FDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQ 125 (208)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCc
Confidence 568899999999998 5666654 468899999999999999888765 5889999999999864 566655 4688999
Q ss_pred CCEEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~ 225 (228)
|++|++++ +.++.+|. .++.+++|+.|++++|.+.
T Consensus 126 L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 126 LKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCC-CccceeCHHHhccCCCccEEEecCCCee
Confidence 99999998 56777775 4788999999999999876
No 35
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=6.6e-14 Score=112.18 Aligned_cols=110 Identities=20% Similarity=0.275 Sum_probs=72.6
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+++|++|++++| .+..+ |..++.+++|++|++++|.+..+|.. ++.+++|+.|++++|. ++.+|. .+..+++
T Consensus 105 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 105 FDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTE 182 (270)
T ss_dssp TTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred cccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCC
Confidence 456677777777777 34444 34566777777777777777776654 5667777777777753 444543 4667777
Q ss_pred CCEEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~ 225 (228)
|++|++++ +.++.+|. .+..+++|+.|++++|.+.
T Consensus 183 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 183 LKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECCC-CcCCcCCHHHhccccCCCEEEecCCCee
Confidence 77777777 45566654 4666777777777777654
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.54 E-value=4e-15 Score=132.99 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=91.1
Q ss_pred cccccccccccccccccCCccEEEccCCCCCcc------------------cchhhc--CCCCcceEEccCCccc-ccch
Q 038390 100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKK------------------FPEIVG--NMKFLRQLLLDGTDIK-GLLL 158 (228)
Q Consensus 100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~------------------~p~~~~--~l~~L~~L~l~~~~i~-~lp~ 158 (228)
..++.+|.. ++++++|++|+|++|. +.. +|+.++ ++++|++|++++|.+. .+|.
T Consensus 193 n~l~~ip~~----l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~ 267 (636)
T 4eco_A 193 NNITFVSKA----VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267 (636)
T ss_dssp CEEEEECGG----GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT
T ss_pred CCCccCCHH----HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH
Confidence 355566666 7888888888888884 544 788777 8888888888888644 5677
Q ss_pred hcCCCCCCcEEeccCCCCCC--ccCcccCCC------CCCCEEeccCCCCCcccch--hhhcCccccceeccccCCC-CC
Q 038390 159 SIVLLSGIVQLNLKGCKNIE--CLPNFISAL------KFPSTLNFSGLLKFRLFPE--IMGCIEHLLALRLLGTAIR-GL 227 (228)
Q Consensus 159 ~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l------~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~-~l 227 (228)
.++++++|++|++++|..++ .+|..++.+ ++|++|++++ +.++.+|. .++.+++|++|++++|.++ .+
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence 78888888888888876344 577777665 7888888887 45567777 7788888888888888777 55
Q ss_pred C
Q 038390 228 P 228 (228)
Q Consensus 228 P 228 (228)
|
T Consensus 347 p 347 (636)
T 4eco_A 347 P 347 (636)
T ss_dssp C
T ss_pred h
Confidence 4
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=7.4e-15 Score=120.31 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=73.8
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCC-CC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALK-FP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~-~L 190 (228)
+..+++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..++.++ +|
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 667777777777777444467777777777777777777776 5677777777777777777654446677777776 77
Q ss_pred CEEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
++|++++|.....+|..++.++ |+.|++++|.++
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred cEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 7777776432224555555544 555555555443
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.53 E-value=4.4e-14 Score=113.90 Aligned_cols=113 Identities=20% Similarity=0.218 Sum_probs=87.2
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+++|++|++++|..++.+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++|. ++.+|. .++.+++
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGN 154 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCC
Confidence 677888888888888546666 66788888888888888888877 4557788888888888864 455554 4778888
Q ss_pred CCEEeccCCCCCcccch-hhhcCccccceeccccCCCCC
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++|++++ +.++.+|. .++.+++|+.|++++|.++++
T Consensus 155 L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 155 LTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp CCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccEEECCC-CcccccCHHHhcCccccCEEECCCCccccc
Confidence 88888888 56777765 478888888888888887743
No 39
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=8.2e-14 Score=107.27 Aligned_cols=110 Identities=24% Similarity=0.403 Sum_probs=82.0
Q ss_pred cCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCCCE
Q 038390 116 MKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFPST 192 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~ 192 (228)
.++|++|++++| .+..+|. .++.+++|++|++++|.++.+|.. +..+++|++|++++|. ++.+|. .+..+++|++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCE
Confidence 457888888888 4555544 467888888888888888877664 5778888888888864 555654 3578888888
Q ss_pred EeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++++ +.++.+|. .++.+++|+.|++++|.++++|
T Consensus 105 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 105 LALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp EECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEcCC-CcCcccCHhHhccCCcCCEEECCCCccceeC
Confidence 88888 56666665 4678888888888888887654
No 40
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=5.1e-14 Score=109.64 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=97.2
Q ss_pred ccccccccccccccccCCccEEEccCCCCCccc-c-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCC
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKF-P-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNI 177 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~-p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~ 177 (228)
.++.+|.. + ...+++|++++| .+..+ | ..+..+++|++|++++|.++.++. .+..+++|++|++++|. +
T Consensus 22 ~l~~iP~~----~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l 93 (220)
T 2v70_A 22 KLNKIPEH----I--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-L 93 (220)
T ss_dssp CCSSCCSC----C--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred CcccCccC----C--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-c
Confidence 45556653 3 345789999999 56666 3 358899999999999999999876 78999999999999975 5
Q ss_pred CccC-cccCCCCCCCEEeccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390 178 ECLP-NFISALKFPSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 178 ~~lp-~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l 227 (228)
+.+| ..+..+++|++|++++ +.++.+ |..++.+++|+.|+|++|.|+.+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 5554 4589999999999999 566665 67899999999999999999876
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=6e-14 Score=124.30 Aligned_cols=118 Identities=21% Similarity=0.113 Sum_probs=100.7
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCC
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIE 178 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~ 178 (228)
+++.+|.. +. +++++|||++| .++.+| ..|.++++|++|+|++|.|+.+|+ .+.++++|++|+|++|+ ++
T Consensus 42 ~l~~vP~~----lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~ 113 (635)
T 4g8a_A 42 NFYKIPDN----LP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQ 113 (635)
T ss_dssp CCSSCCSS----SC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CC
T ss_pred CcCccCCC----CC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CC
Confidence 67777753 32 47999999999 677775 579999999999999999999976 58999999999999974 77
Q ss_pred ccCc-ccCCCCCCCEEeccCCCCCcccch-hhhcCccccceeccccCCCCC
Q 038390 179 CLPN-FISALKFPSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 179 ~lp~-~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~l 227 (228)
.+|. .|.++++|++|++++ +.++.+|+ .++.+++|++|++++|.++.+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp EECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccccC
Confidence 7875 589999999999999 56788875 589999999999999999754
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=1.3e-13 Score=112.58 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=69.8
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|++|++++| .+..+| .+..+++|++|++++|.++.+|. +..+++|+.|++++| .++.++. ++.+++|+.
T Consensus 81 ~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 155 (308)
T 1h6u_A 81 LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQY 155 (308)
T ss_dssp GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCE
T ss_pred HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccE
Confidence 555666666666666 355554 35666666666666666666654 666667777777665 3445544 666777777
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++++ +.++.+|. ++.+++|+.|++++|.++++|
T Consensus 156 L~l~~-n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 156 LSIGN-AQVSDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp EECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred EEccC-CcCCCChh-hcCCCCCCEEECCCCccCcCh
Confidence 77777 45566655 667777777777777776553
No 43
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.52 E-value=3.9e-14 Score=129.17 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=88.0
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..++.+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 667777777777777555577777777788888888888776 5677778888888888888766667787788888888
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCC-CCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR-GLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~-~lP 228 (228)
+|++++|...+.+|..++.+++|+.|++++|.++ .+|
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 8888886555577888888888888888888776 444
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.52 E-value=7.4e-14 Score=119.41 Aligned_cols=114 Identities=19% Similarity=0.265 Sum_probs=60.6
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+.++++|++|+|++|. +..+ +..+.++++|++|++++|.++.+|. .+..+++|+.|++++|. +..+|. .+.++++
T Consensus 84 ~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPS 161 (440)
T ss_dssp TSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred hhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcc
Confidence 4555666666666653 3333 3455556666666666666655544 35555666666666543 333433 4455555
Q ss_pred CCEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++|++++|+.++.+|. .+..+++|+.|++++|.++.+|
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 55555555555555443 3455555555555555554443
No 45
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=2.6e-14 Score=112.43 Aligned_cols=113 Identities=9% Similarity=0.112 Sum_probs=64.6
Q ss_pred ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccC-Ccccccch-hcCCCCCCcEEeccCCCCCCccCcccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDG-TDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNFISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 189 (228)
+..+++|++|++++|..++.+|. .+..+++|++|++++ |.++.+|. .+..+++|++|++++|. ++.+|. ++.+++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~~ 128 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVYS 128 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCCB
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-cccccc
Confidence 45566666666666643555543 456666666666665 66666543 45566666666666643 444554 555555
Q ss_pred CC---EEeccCCCCCcccch-hhhcCcccc-ceeccccCCCCC
Q 038390 190 PS---TLNFSGLLKFRLFPE-IMGCIEHLL-ALRLLGTAIRGL 227 (228)
Q Consensus 190 L~---~L~l~~c~~l~~lp~-~~~~l~~L~-~L~l~~n~l~~l 227 (228)
|+ +|++++|..++.+|. .++.+++|+ .|++++|.++.+
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 55 666666335555553 355566666 666666655544
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.51 E-value=6.8e-14 Score=120.03 Aligned_cols=115 Identities=19% Similarity=0.158 Sum_probs=75.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L 190 (228)
+.++++|++|+|++|......|..+..+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|. .+.++++|
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTC
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcc
Confidence 56677777777777733333345677777777777777777776554 6667777777777754 445543 46667777
Q ss_pred CEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390 191 STLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+.|++++|+.++.+|. .+..+++|+.|++++|.++++|
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 7777777666666664 4666666666666666666554
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=8e-15 Score=134.80 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=49.2
Q ss_pred ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCc-ccc--cchhcCCCC-------CCcEEeccCCCCCCccCc--
Q 038390 115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTD-IKG--LLLSIVLLS-------GIVQLNLKGCKNIECLPN-- 182 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~-i~~--lp~~~~~l~-------~L~~L~l~~~~~~~~lp~-- 182 (228)
++++|++|+|++|...+.+|..++++++|++|++++|. ++. +|..++.++ +|+.|++++|. +..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChh
Confidence 44444444444443344444444444444444444443 332 343333222 44444444432 224444
Q ss_pred ccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390 183 FISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 183 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
.++++++|+.|++++ +.+..+| .++.+++|+.|++++|.++.+
T Consensus 568 ~l~~L~~L~~L~Ls~-N~l~~lp-~~~~L~~L~~L~Ls~N~l~~l 610 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVH-NKVRHLE-AFGTNVKLTDLKLDYNQIEEI 610 (876)
T ss_dssp HHTTCTTCCEEECTT-SCCCBCC-CCCTTSEESEEECCSSCCSCC
T ss_pred hhhcCCCCCEEECCC-CCcccch-hhcCCCcceEEECcCCccccc
Confidence 444555555555554 2333444 444455555555555554443
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.51 E-value=3.5e-14 Score=125.77 Aligned_cols=116 Identities=17% Similarity=0.077 Sum_probs=80.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc--cchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG--LLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 190 (228)
+..+++|++|++++|...+..|..++.+++|++|++++|.+.. +|..++.+++|+.|++++|...+..|..++.+++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 4566777777777775445556667777777777777777764 56667777788888887765444445667777778
Q ss_pred CEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++|++++|......|..++.+++|+.|++++|.|+.+|
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 88888775433344677777777888888887777654
No 49
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.7e-13 Score=102.81 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=95.9
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCC
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIE 178 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~ 178 (228)
.++.+|.. ..++|++|++++| .+..+|. .++.+++|++|++++|.++.+|.. ++.+++|+.|++++|. ++
T Consensus 18 ~l~~~p~~------~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~ 89 (177)
T 2o6r_A 18 GLTSVPTG------IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQ 89 (177)
T ss_dssp CCSSCCTT------CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CCccCCCC------CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-cc
Confidence 45555542 3478999999998 4666654 578999999999999999998765 6899999999999975 66
Q ss_pred ccCc-ccCCCCCCCEEeccCCCCCcccchh-hhcCccccceeccccCCCC
Q 038390 179 CLPN-FISALKFPSTLNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 179 ~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~ 226 (228)
.+|. .+..+++|++|++++ +.++.+|.. +..+++|+.|++++|.+..
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6665 468999999999999 578888865 5889999999999999863
No 50
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=3.5e-14 Score=103.63 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=97.3
Q ss_pred cccCCccEEEccCCCCC-cccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 114 IFMKSPKTLILSGCSKL-KKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~l-~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
...++|+.|++++|... +.+|..++.+++|++|++++|.+..+ ..++.+++|++|++++|.....+|..++.+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34578999999999533 38898889999999999999999988 77899999999999997654448887888999999
Q ss_pred EeccCCCCCcccc--hhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++++ +.++.+| ..++.+++|++|++++|.++++|
T Consensus 93 L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 93 LNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp EECTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred EECCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence 99999 5677765 78999999999999999998664
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.51 E-value=9.7e-14 Score=118.69 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=81.5
Q ss_pred ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|++|++++|+.++.++. .+..+++|++|++++|.++.+| .+..+++|+.|++++|......|..+.++++|+
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 234 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCC
Confidence 55666777777777666666654 5677788888888888887777 367778888888888643333366777888888
Q ss_pred EEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390 192 TLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
.|++++ +.++.+ |..+..+++|+.|+|++|.|+.+|
T Consensus 235 ~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 235 KLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp EEECTT-CCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred EEECCC-CceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 888887 455544 456777888888888888887665
No 52
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=5.3e-14 Score=105.67 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=96.2
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCccc-CCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFI-SALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~ 191 (228)
+..+++|++|++++| .+..+|......++|++|++++|.++.+ ..++.+++|++|++++|. ++.+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 667889999999999 6777776444444999999999999988 678999999999999974 67787655 8999999
Q ss_pred EEeccCCCCCcccch--hhhcCccccceeccccCCCCCC
Q 038390 192 TLNFSGLLKFRLFPE--IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|++++ +.++.+|. .++.+++|+.|++++|.++.+|
T Consensus 92 ~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 92 ELILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp EEECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred EEECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 999999 67888987 8899999999999999998665
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=2.4e-14 Score=118.90 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=52.3
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc--ccCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN--FISALK 188 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~ 188 (228)
+..+++|++|++++| .+..+ |..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .++.+|. .+.+++
T Consensus 72 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 72 LQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLT 149 (353)
T ss_dssp TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCC
Confidence 444555555555555 23322 33455555555555555555555443 445555555555553 2334443 344455
Q ss_pred CCCEEeccCCCCCcccc-hhhhcCccccceeccccCCC
Q 038390 189 FPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~ 225 (228)
+|++|++++|+.++.++ ..++.+++|++|++++|.++
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 55555555543344332 33444444444444444443
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.50 E-value=1.4e-13 Score=117.70 Aligned_cols=112 Identities=13% Similarity=0.042 Sum_probs=93.9
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|++|++++|...+..|..++.+++|++|++++|.++++ |..++.+++|+.|++++|......|..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 77889999999999954444577889999999999999999887 56788999999999999764444477889999999
Q ss_pred EEeccCCCCCcccch-hhhcCccccceeccccCCC
Q 038390 192 TLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~ 225 (228)
+|++++ +.++.+|. .++.+++|+.|++++|.++
T Consensus 375 ~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 375 ELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCC-CccccCCHhHhccCCcccEEEccCCCcc
Confidence 999999 67777775 5688999999999999987
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=1.2e-13 Score=118.44 Aligned_cols=114 Identities=22% Similarity=0.233 Sum_probs=80.3
Q ss_pred ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|+.|++++|+.++.+|. .+..+++|++|++++|.+..+| .+..+++|+.|++++|......|..+.++++|+
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 245 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCC
T ss_pred HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCC
Confidence 45566666666666656666654 4667777888888888777776 467777888888887654444466777888888
Q ss_pred EEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390 192 TLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
.|++++| .+..+ |..+..+++|+.|+|++|.|+.+|
T Consensus 246 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 246 KLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred EEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 8888874 45544 566778888888888888887665
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.50 E-value=7.1e-14 Score=116.10 Aligned_cols=115 Identities=18% Similarity=0.065 Sum_probs=97.5
Q ss_pred ccccCCccEEEccCCCCCcccchh-hcCCCCcceEEccCCcccccch--hcCCCCCCcEEeccCCCCCCcc-CcccCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEI-VGNMKFLRQLLLDGTDIKGLLL--SIVLLSGIVQLNLKGCKNIECL-PNFISALK 188 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~-~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~ 188 (228)
+.++++|++|++++| .+..+|.. ++.+++|++|++++|.++.+|. .+..+++|++|++++|+.++.+ |..+++++
T Consensus 96 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 96 FSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp TTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred cCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 778899999999998 56677655 8899999999999999999987 6889999999999998667776 45788999
Q ss_pred CCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 189 FPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|++|++++|..-...|..++.+++|++|++++|.++.+|
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 9999999995443345788999999999999999987643
No 57
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=2e-13 Score=111.57 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=74.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|++|++++| .+..+|. +..+++|++|++++|.+..++. ++.+++|+.|++++| .++.++. +..+++|+.
T Consensus 103 ~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 103 IAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTT 177 (308)
T ss_dssp GTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCE
T ss_pred hcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCE
Confidence 667777888888877 4666654 6777777777777777777665 667777777777775 3455555 667777777
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++++ +.++.+|. +..+++|+.|++++|.++++
T Consensus 178 L~l~~-n~l~~~~~-l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 178 LKADD-NKISDISP-LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp EECCS-SCCCCCGG-GGGCTTCCEEECTTSCCCBC
T ss_pred EECCC-CccCcChh-hcCCCCCCEEEccCCccCcc
Confidence 77777 45555554 56666777777777766654
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=3.4e-14 Score=130.63 Aligned_cols=113 Identities=10% Similarity=0.091 Sum_probs=102.4
Q ss_pred ccccCCccEEEccCCCCCc--ccchhhcCCC-------CcceEEccCCcccccch--hcCCCCCCcEEeccCCCCCCccC
Q 038390 113 LIFMKSPKTLILSGCSKLK--KFPEIVGNMK-------FLRQLLLDGTDIKGLLL--SIVLLSGIVQLNLKGCKNIECLP 181 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~--~~p~~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~lp 181 (228)
++++++|+.|++++|..+. .+|..++.++ +|++|++++|.+..+|. .++.+++|+.|++++|. +..+|
T Consensus 511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp 589 (876)
T 4ecn_A 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE 589 (876)
T ss_dssp GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC
T ss_pred HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch
Confidence 8899999999999996355 5898887776 99999999999999999 89999999999999976 55899
Q ss_pred cccCCCCCCCEEeccCCCCCcccchhhhcCcc-ccceeccccCCCCCC
Q 038390 182 NFISALKFPSTLNFSGLLKFRLFPEIMGCIEH-LLALRLLGTAIRGLP 228 (228)
Q Consensus 182 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~-L~~L~l~~n~l~~lP 228 (228)
.++.+++|+.|++++ +.+..+|+.++.+++ |+.|++++|.++.+|
T Consensus 590 -~~~~L~~L~~L~Ls~-N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDY-NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp -CCCTTSEESEEECCS-SCCSCCCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred -hhcCCCcceEEECcC-CccccchHHHhhccccCCEEECcCCCCCcCc
Confidence 899999999999999 567799999999999 999999999999876
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=1.2e-13 Score=112.40 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=70.1
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc--cchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG--LLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 190 (228)
+..+++|++|++++|......|..+..+++|++|++++|.+.. +|..+..+++|+.|++++|......|..+..+++|
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 4556667777777664333445556666777777777776654 56666667777777777654322235556666777
Q ss_pred CEEeccCCCCCcccc-hhhhcCccccceeccccCCCC
Q 038390 191 STLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~ 226 (228)
++|++++ +.++.+| ..++.+++|+.|++++|.+++
T Consensus 202 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 202 QVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CEEECTT-SCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred CEEECCC-CccCccChhhccCcccCCEeECCCCCCcc
Confidence 7777776 3455444 356666677777777776653
No 60
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=1.5e-13 Score=103.23 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=63.1
Q ss_pred cEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcc-cCCCCCCCEEeccC
Q 038390 120 KTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNF-ISALKFPSTLNFSG 197 (228)
Q Consensus 120 ~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~~ 197 (228)
+.++++++ .++.+|..+. ++|++|++++|.+..+ |..++.+++|++|+|++| .++.+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 55666665 5566665443 5666677777766666 345666667777777664 35555543 45666777777766
Q ss_pred CCCCcccchh-hhcCccccceeccccCCC
Q 038390 198 LLKFRLFPEI-MGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 198 c~~l~~lp~~-~~~l~~L~~L~l~~n~l~ 225 (228)
|.++.+|.. ++.+++|+.|++++|.+.
T Consensus 91 -N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 -NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 456666643 666667777777776665
No 61
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=1.5e-13 Score=109.93 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=96.8
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCcc
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECL 180 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l 180 (228)
.++.++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.++.+|.... ++|+.|++++| .++.+
T Consensus 52 ~i~~l~~-----l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~ 121 (263)
T 1xeu_A 52 NIQSLAG-----MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNN-ELRDT 121 (263)
T ss_dssp CCCCCTT-----GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSS-CCSBS
T ss_pred CcccchH-----HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCC-ccCCC
Confidence 4455554 889999999999998 6777877 8999999999999999999876444 89999999997 46666
Q ss_pred CcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390 181 PNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 181 p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
| .+..+++|+.|++++ +.++.+| .++.+++|+.|++++|.|+++
T Consensus 122 ~-~l~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 122 D-SLIHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp G-GGTTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred h-hhcCcccccEEECCC-CcCCCCh-HHccCCCCCEEECCCCcCcch
Confidence 5 488999999999999 6788886 688999999999999998754
No 62
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=2.9e-13 Score=108.21 Aligned_cols=108 Identities=18% Similarity=0.254 Sum_probs=90.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|++|++++| .+..+|.... ++|++|++++|.++.+| .+..+++|+.|++++|. ++.+| .++.+++|+.
T Consensus 81 l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~ 154 (263)
T 1xeu_A 81 LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEV 154 (263)
T ss_dssp GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCE
T ss_pred hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCE
Confidence 778899999999998 6777776444 88999999999998886 58899999999999864 66776 5888999999
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++++ +.+..+ ..+..+++|+.|++++|.++..|
T Consensus 155 L~L~~-N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 155 LDLHG-NEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp EECTT-SCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred EECCC-CcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 99999 567776 67888999999999999887544
No 63
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=3e-13 Score=109.64 Aligned_cols=109 Identities=24% Similarity=0.267 Sum_probs=73.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|++|++++| .+..+|. ++.+++|++|++++|.++.++ .+..+++|+.|++++|. ++.+ ..++.+++|+.
T Consensus 86 l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~ 160 (291)
T 1h6t_A 86 LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDT 160 (291)
T ss_dssp GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSE
T ss_pred cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCE
Confidence 556667777777766 4555544 666777777777777776663 46667777777777653 4445 34667777777
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++++ +.++.++. ++.+++|+.|++++|.|+.+|
T Consensus 161 L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 161 LSLED-NQISDIVP-LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp EECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred EEccC-Cccccchh-hcCCCccCEEECCCCcCCCCh
Confidence 77777 45666655 777778888888888776653
No 64
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=1.6e-13 Score=104.67 Aligned_cols=104 Identities=22% Similarity=0.272 Sum_probs=90.5
Q ss_pred cEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC-cccCCCCCCCEEeccCC
Q 038390 120 KTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP-NFISALKFPSTLNFSGL 198 (228)
Q Consensus 120 ~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~c 198 (228)
++++++++ .++.+|..+. ++|++|++++|.++.+|..+..+++|+.|++++|. ++.++ ..|.++++|++|++++
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~- 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY- 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC-
Confidence 67899887 6888887554 68999999999999999999999999999999975 55554 5689999999999999
Q ss_pred CCCcccc-hhhhcCccccceeccccCCCCCC
Q 038390 199 LKFRLFP-EIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 199 ~~l~~lp-~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+.++.+| ..++.+++|+.|+|++|.|+.+|
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 6677776 57999999999999999998775
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.49 E-value=1.3e-13 Score=113.40 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=67.9
Q ss_pred ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCCCE
Q 038390 115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISALKFPST 192 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~ 192 (228)
.+++|++|++++| .+..+|..+. ++|++|++++|.++.+ |..+..+++|+.|++++|. ++.+ +..+..+++|++
T Consensus 169 ~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 169 GMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRE 244 (330)
T ss_dssp GCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCE
T ss_pred CCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCE
Confidence 3444444444444 3333333222 4555555555555554 4456777777777777764 3444 335677778888
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++++ +.++.+|..++.+++|++|++++|.|+.+|
T Consensus 245 L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 245 LHLNN-NKLVKVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp EECCS-SCCSSCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred EECCC-CcCccCChhhccCCCcCEEECCCCcCCccC
Confidence 88887 466778877777888888888888877664
No 66
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.7e-13 Score=102.44 Aligned_cols=102 Identities=20% Similarity=0.236 Sum_probs=65.3
Q ss_pred ccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcc-cCCCCCCCEEecc
Q 038390 119 PKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNF-ISALKFPSTLNFS 196 (228)
Q Consensus 119 L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~l~ 196 (228)
.+++++++| .+..+|..+. ++|++|++++|.++.+ |..+..+++|++|++++|. ++.+|.. +..+++|++|+++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 456677766 5666665442 5677777777777666 4456667777777777653 4555543 4667777777777
Q ss_pred CCCCCcccch-hhhcCccccceeccccCCC
Q 038390 197 GLLKFRLFPE-IMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 197 ~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~ 225 (228)
+ |.++.+|. .++.+++|+.|+|++|.++
T Consensus 87 ~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 D-NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp S-SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred C-CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7 45666654 4666777777777777654
No 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=2.4e-13 Score=110.20 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=66.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|++|++++| .+..++ .+..+++|++|++++|.++.+ ..++.+++|+.|++++|. ++.++. +..+++|+.
T Consensus 108 l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~ 182 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQN 182 (291)
T ss_dssp GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCE
T ss_pred hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCE
Confidence 556666666666666 454543 355666666666666666666 356666666666666653 444544 666666666
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~ 226 (228)
|++++ +.++.+|. +..+++|+.|++++|.++.
T Consensus 183 L~L~~-N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSK-NHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCS-SCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred EECCC-CcCCCChh-hccCCCCCEEECcCCcccC
Confidence 66666 45566653 5666666666666666554
No 68
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=118.28 Aligned_cols=113 Identities=18% Similarity=0.134 Sum_probs=54.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|++|+|++|...+..|..++++++|++|++++|.++.+|.. +..+++|++|++++|......|..+..+++|+
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 44555555555555522222244555555555555555555555443 34555555555555433222333445555555
Q ss_pred EEeccCCCCCccc-chhhhcCccccceeccccCCCC
Q 038390 192 TLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 192 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~ 226 (228)
+|++++ +.+..+ |..++.+++|+.|++++|.++.
T Consensus 132 ~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 132 SLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp EEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred EEECCC-CccceeChhhccCCCCCCEEECCCCcCcc
Confidence 555555 223322 2344444455555555544443
No 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.47 E-value=2e-13 Score=116.88 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=96.2
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCCCEEe
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISALKFPSTLN 194 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~ 194 (228)
++|++|++++|...+..|..++.+++|++|++++|.+..+ |..++.+++|+.|++++|.. +.+ |..++.+++|++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEE
Confidence 6899999999966666788899999999999999999987 55789999999999999764 555 67789999999999
Q ss_pred ccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390 195 FSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 195 l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+++| .++.+ |..++.+++|++|++++|.|+++|
T Consensus 354 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 354 LSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp CCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCC-cccccChhhccccccccEEECCCCccccCC
Confidence 9995 55655 788999999999999999999876
No 70
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.47 E-value=1.4e-13 Score=125.59 Aligned_cols=116 Identities=19% Similarity=0.153 Sum_probs=99.5
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|++|++++|...+.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...+.+|..++++++|+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 778889999999998655678888999999999999999887 6788889999999999999877668888899999999
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCC-CCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR-GLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~-~lP 228 (228)
+|++++|.....+|..++.+++|++|++++|.++ .+|
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence 9999996655588999999999999999999887 444
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=1e-13 Score=109.03 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=76.5
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcc---eEEccCC-cccccchh-cCCCCCCc-EEeccCCCCCCccCcccCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLR---QLLLDGT-DIKGLLLS-IVLLSGIV-QLNLKGCKNIECLPNFISA 186 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~---~L~l~~~-~i~~lp~~-~~~l~~L~-~L~l~~~~~~~~lp~~~~~ 186 (228)
+..+++|++|++++| .+..+|. ++.+++|+ +|++++| .++.+|.. +..+++|+ .|++++|. ++.+|.....
T Consensus 101 f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~ 177 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN 177 (239)
T ss_dssp EECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT
T ss_pred hCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC
Confidence 456666667777666 4555665 56666666 7777777 77766543 66777777 77777753 5566665444
Q ss_pred CCCCCEEeccCCCCCcccc-hhhhcC-ccccceeccccCCCCCC
Q 038390 187 LKFPSTLNFSGLLKFRLFP-EIMGCI-EHLLALRLLGTAIRGLP 228 (228)
Q Consensus 187 l~~L~~L~l~~c~~l~~lp-~~~~~l-~~L~~L~l~~n~l~~lP 228 (228)
.++|+.|++++|..++.+| ..++.+ ++|+.|++++|.++.+|
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~ 221 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC
Confidence 4777888887743477775 457777 88888888888887765
No 72
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.47 E-value=3.4e-13 Score=117.42 Aligned_cols=112 Identities=20% Similarity=0.234 Sum_probs=76.6
Q ss_pred ccccCCccEEEccCCCCCc---ccchhhcCCCCcceEEccCCcccc-cchh-cCCCCCCcEEeccCCCCCCccCcccCCC
Q 038390 113 LIFMKSPKTLILSGCSKLK---KFPEIVGNMKFLRQLLLDGTDIKG-LLLS-IVLLSGIVQLNLKGCKNIECLPNFISAL 187 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~---~~p~~~~~l~~L~~L~l~~~~i~~-lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l 187 (228)
+..+++|++|++++| .+. .+|..++.+++|++|++++|.+.. +|.. +..+++|+.|++++|...+..|..+.
T Consensus 344 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-- 420 (520)
T 2z7x_B 344 CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-- 420 (520)
T ss_dssp CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--
T ss_pred hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--
Confidence 667777888888877 344 445667777888888888887776 6654 56667777777777654444454432
Q ss_pred CCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 188 KFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 188 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++|+.|++++ +.++.+|..+..+++|++|++++|.|+.+|
T Consensus 421 ~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 421 PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred ccCCEEECCC-CcccccchhhhcCCCCCEEECCCCcCCccC
Confidence 5677777777 456677776667777777777777777665
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=6.1e-14 Score=114.12 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=79.1
Q ss_pred ccccCCccEEEccCCCCCcccc--hhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCC-ccCcccCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP--EIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIE-CLPNFISALK 188 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p--~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~ 188 (228)
+..+++|++|++++| .+..++ ..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.... .+|..+..++
T Consensus 97 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 556677777777776 444444 3566777777777777776644 4456677777788777764333 3677778888
Q ss_pred CCCEEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390 189 FPSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|++|++++| .++.+ |..++.+++|+.|++++|.++++|
T Consensus 176 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 176 NLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred CCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence 8888888884 45554 567888888888888888887653
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=3.6e-13 Score=112.39 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=98.3
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccch-hhc-CCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCC
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPE-IVG-NMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNI 177 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~-~~~-~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~ 177 (228)
.++.+|.. + .+.++.|+|++| .+..++. .+. .+++|++|+|++|.+..++. .+..+++|++|+|++|. +
T Consensus 29 ~l~~iP~~----~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l 100 (361)
T 2xot_A 29 QLPNVPQS----L--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-L 100 (361)
T ss_dssp CCSSCCSS----C--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred CcCccCcc----C--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-C
Confidence 45666653 3 245899999999 5666654 455 89999999999999999875 68999999999999975 6
Q ss_pred CccCc-ccCCCCCCCEEeccCCCCCccc-chhhhcCccccceeccccCCCCCC
Q 038390 178 ECLPN-FISALKFPSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 178 ~~lp~-~~~~l~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+.+|. .+..+++|+.|+|++ +.+..+ |..++.+++|+.|+|++|.|+.+|
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 66655 688999999999999 566665 678999999999999999999876
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.46 E-value=2.4e-13 Score=121.99 Aligned_cols=112 Identities=19% Similarity=0.111 Sum_probs=48.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccC-cccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLP-NFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 190 (228)
+.++++|++|++++|...+..|..++++++|++|++++|.+..+|. .++++++|++|++++|. +..+| ..++++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCC
Confidence 3444445555555442222224444444445555555444444443 24444444454444432 22232 334444444
Q ss_pred CEEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
++|++++|......|..++.+++|++|++++|.++
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCccc
Confidence 44444443222222333444444444444444443
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=2.7e-13 Score=119.06 Aligned_cols=112 Identities=23% Similarity=0.301 Sum_probs=85.5
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+.++++|++|++++| .+..+ |..++++++|++|++++|.+..+| ..++.+++|++|++++|. +..+|. .++++++
T Consensus 48 ~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 48 FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKT 125 (570)
T ss_dssp TTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTT
T ss_pred hhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCCcccccccc
Confidence 677888888888888 45555 456788888888888888887775 567888888888888864 555654 5788888
Q ss_pred CCEEeccCCCCCc--ccchhhhcCccccceeccccCCCCC
Q 038390 190 PSTLNFSGLLKFR--LFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 190 L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++|++++| .+. .+|+.++.+++|++|++++|.++.+
T Consensus 126 L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 126 LKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred ccEEecCCC-ccceecChhhhcccCCCCEEeCcCCcccee
Confidence 888888884 444 4678888888888888888887654
No 77
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=2.2e-13 Score=120.14 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=96.0
Q ss_pred cccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCc
Q 038390 100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIEC 179 (228)
Q Consensus 100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~ 179 (228)
..++.+|. ++.+++|+.|+|++| .+..+|..++.+++|+.|+|++|.++.+| .++.+++|+.|++++|. ++.
T Consensus 451 n~l~~lp~-----~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~ 522 (567)
T 1dce_A 451 KDLTVLCH-----LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQ 522 (567)
T ss_dssp SCCSSCCC-----GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCS
T ss_pred CCCCCCcC-----ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCC
Confidence 35666665 899999999999999 67799999999999999999999999999 89999999999999975 566
Q ss_pred c--CcccCCCCCCCEEeccCCCCCcccchh----hhcCccccceec
Q 038390 180 L--PNFISALKFPSTLNFSGLLKFRLFPEI----MGCIEHLLALRL 219 (228)
Q Consensus 180 l--p~~~~~l~~L~~L~l~~c~~l~~lp~~----~~~l~~L~~L~l 219 (228)
+ |..++.+++|+.|++++ |.++.+|+. +..+++|+.|++
T Consensus 523 ~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 523 SAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 6 89999999999999999 667777654 344888998864
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.46 E-value=4.9e-13 Score=109.97 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=82.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC-cccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP-NFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~ 191 (228)
+..+++|++|++++|...+..|..++.+++|++|++++|.++++|..+. ++|+.|++++|. ++.++ ..+.++++|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCC
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCcccc
Confidence 6778888888888884333347788888888888888888888876654 678888888764 44444 3577788888
Q ss_pred EEeccCCCCCc---ccchhhhcCccccceeccccCCCCCC
Q 038390 192 TLNFSGLLKFR---LFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~---~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|++++| .++ ..|..++.+++|++|++++|.++.+|
T Consensus 149 ~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 149 VVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp EEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred EEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 8888874 343 44566777888888888888877665
No 79
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=2.1e-13 Score=103.91 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=89.2
Q ss_pred cEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh--cCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 038390 120 KTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS--IVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSG 197 (228)
Q Consensus 120 ~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 197 (228)
++++++++ .++.+|..+.. ++++|++++|.++.++.. ++.+++|++|++++|...+..|..+.++++|++|++++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999998 78899986654 899999999999999864 89999999999999765444478899999999999999
Q ss_pred CCCCcccc-hhhhcCccccceeccccCCCCC
Q 038390 198 LLKFRLFP-EIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 198 c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l 227 (228)
+.++.+| ..++.+++|++|++++|.|+.+
T Consensus 88 -N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 88 -NKIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp -CCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred -CcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 6677666 5589999999999999999854
No 80
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=4.9e-14 Score=127.70 Aligned_cols=118 Identities=17% Similarity=0.074 Sum_probs=97.7
Q ss_pred cccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccC
Q 038390 102 RTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLP 181 (228)
Q Consensus 102 l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp 181 (228)
+..++.. +..+++|++|+|++| .+..+|..++.+++|++|+|++|.++.+|..++.+++|++|+|++| .++.+|
T Consensus 236 l~~l~~~----~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp 309 (727)
T 4b8c_D 236 IFNISAN----IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLP 309 (727)
T ss_dssp CSCCCGG----GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCC
T ss_pred CCCCChh----hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccC
Confidence 3345544 789999999999999 6779999999999999999999999999999999999999999997 578999
Q ss_pred cccCCCCCCCEEeccCCCCCcccchhhhcCcc-ccceeccccCCC
Q 038390 182 NFISALKFPSTLNFSGLLKFRLFPEIMGCIEH-LLALRLLGTAIR 225 (228)
Q Consensus 182 ~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~-L~~L~l~~n~l~ 225 (228)
..|+.+++|++|+|++|...+.+|..++.+.. +..+++++|.++
T Consensus 310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 310 WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 99999999999999995544466777655432 234667777665
No 81
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.45 E-value=4.2e-13 Score=112.82 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=72.1
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCcc-cCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPNF-ISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~ 189 (228)
+..+++|++|++++| .+..++ ..++.+++|++|++++|.+..+|+ .++.+++|++|++++| .++.+|.. ++++++
T Consensus 65 ~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 65 LDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPK 142 (390)
T ss_dssp HHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCC
Confidence 356677777777776 344443 466777777777777777766643 3567777777777765 35566654 366777
Q ss_pred CCEEeccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390 190 PSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 190 L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++|++++| .+..+ |..++.+++|++|++++|.++.+
T Consensus 143 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 143 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 777777773 44444 34566777777777777766643
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.45 E-value=2e-13 Score=119.54 Aligned_cols=114 Identities=19% Similarity=0.147 Sum_probs=84.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCC-ccCcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIE-CLPNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L 190 (228)
+.++++|++|++++|...+..|..++.+++|++|++++|.+..+|+. ++.+++|++|++++|.... ..|..++++++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 67788888888888843333346778888888888888888877654 7888888888888865332 346677888888
Q ss_pred CEEeccCCCCCcccc-hhhhcCccccceeccccCCCC
Q 038390 191 STLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~ 226 (228)
++|++++|..++.+| ..++.+++|++|++++|.+++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 888888866567776 467788888888888887763
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.45 E-value=5e-13 Score=116.32 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=47.0
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNF 195 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 195 (228)
++|++|++++|...+..|..+..+++|++|++++|.++.+ |..++.+++|++|++++| .++.+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 4455555554422222223444455555555555544444 334444555555555543 23344443 4445555555
Q ss_pred cCCCCCc--ccchhhhcCccccceeccccCC
Q 038390 196 SGLLKFR--LFPEIMGCIEHLLALRLLGTAI 224 (228)
Q Consensus 196 ~~c~~l~--~lp~~~~~l~~L~~L~l~~n~l 224 (228)
++| .+. .+|..++.+++|++|++++|.+
T Consensus 98 ~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 98 SFN-AFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CSS-CCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cCC-ccccccchhhhccCCcceEEEecCccc
Confidence 542 222 2344444555555555554444
No 84
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=4.1e-13 Score=123.57 Aligned_cols=113 Identities=20% Similarity=0.152 Sum_probs=91.6
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcc--cCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNF--ISALK 188 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~--~~~l~ 188 (228)
+.++++|++|++++|.....+ |+.++++++|++|+|++|.+..+ |..++++++|++|++++|.....+|.. +++++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 788889999999988666676 67788999999999999988877 778888999999999987655555654 88899
Q ss_pred CCCEEeccCCCCCccc--chhhhcCccccceeccccCCCC
Q 038390 189 FPSTLNFSGLLKFRLF--PEIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~n~l~~ 226 (228)
+|++|++++| .+..+ +..++++++|++|++++|.++.
T Consensus 124 ~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 124 ALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999999984 45443 3578889999999999988864
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.44 E-value=6e-14 Score=114.77 Aligned_cols=112 Identities=11% Similarity=0.070 Sum_probs=91.6
Q ss_pred cccCCccEEEccCCCCCcccchhhcCC-----CCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCc--cCccc-
Q 038390 114 IFMKSPKTLILSGCSKLKKFPEIVGNM-----KFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIEC--LPNFI- 184 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~l~~~p~~~~~l-----~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--lp~~~- 184 (228)
..+++|++|++++| .+..+|..++.+ ++|++|++++|.+..++ ..++.+++|++|++++|...+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 78999999999999 566668777777 89999999999999886 6789999999999999875544 34445
Q ss_pred -CCCCCCCEEeccCCCCCcccc----hhhhcCccccceeccccCCCCC
Q 038390 185 -SALKFPSTLNFSGLLKFRLFP----EIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 185 -~~l~~L~~L~l~~c~~l~~lp----~~~~~l~~L~~L~l~~n~l~~l 227 (228)
+.+++|++|++++ +.++.+| ..+..+++|+.|++++|.+++.
T Consensus 197 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 197 PLKFPTLQVLALRN-AGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp TTSCTTCCEEECTT-SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred hccCCCCCEEECCC-CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 8899999999999 5677443 2346789999999999999863
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.44 E-value=4.7e-13 Score=118.75 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=74.4
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcc-cCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNF-ISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~ 189 (228)
+..+++|++|++++|. +..+ |..++.+++|++|++++|.+..+|+. ++.+++|++|++++| .++.+|.. ++++++
T Consensus 71 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPK 148 (597)
T ss_dssp HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred HccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCC
Confidence 4556777777777773 4444 34677777777777777777766543 577777777777775 35566654 467777
Q ss_pred CCEEeccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390 190 PSTLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 190 L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++|++++| .+..+ |..++.+++|+.|++++|.++.+
T Consensus 149 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 149 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 777777774 44443 34577777777777777776654
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=4.1e-13 Score=107.72 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=75.0
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCC-ccCcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIE-CLPNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L 190 (228)
+..+++|++|++++|...+..|..+..+++|++|++++|.+..++. .++.+++|+.|++++|.... .+|..++++++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence 6677888888888884333334667888888888888888877755 57788888888888865332 257778888888
Q ss_pred CEEeccCCCCCcccc-hhhhcCcccc----ceeccccCCC
Q 038390 191 STLNFSGLLKFRLFP-EIMGCIEHLL----ALRLLGTAIR 225 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp-~~~~~l~~L~----~L~l~~n~l~ 225 (228)
++|++++ +.++.+| ..++.+++|+ .|++++|.++
T Consensus 152 ~~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 152 EHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp CEEECCS-SCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred CEEECCC-CCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence 8888888 4455443 3444444333 4444444443
No 88
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.43 E-value=1.5e-12 Score=107.57 Aligned_cols=110 Identities=20% Similarity=0.255 Sum_probs=68.5
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|++|++++| .+..+| .+..+++|++|++++|.+..+|. +..+++|+.|++++|.....++. +..+++|++
T Consensus 84 ~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~ 159 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNY 159 (347)
T ss_dssp GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCE
T ss_pred hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcE
Confidence 555666666666666 454544 35666666666666666666654 66666666666666654444433 666677777
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++++| .+..++. ++.+++|+.|++++|.++++|
T Consensus 160 L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 160 LTVTES-KVKDVTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp EECCSS-CCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred EEecCC-CcCCchh-hccCCCCCEEEccCCcccccc
Confidence 777763 4455544 667777777777777776543
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.43 E-value=2e-13 Score=111.62 Aligned_cols=110 Identities=20% Similarity=0.152 Sum_probs=87.3
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc---cchhc--CCCCCCcEEeccCCCCCCcc---Cc-ccCCC
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG---LLLSI--VLLSGIVQLNLKGCKNIECL---PN-FISAL 187 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~---lp~~~--~~l~~L~~L~l~~~~~~~~l---p~-~~~~l 187 (228)
++|++|++++|...+..|+.++.+++|++|++++|.+.. +|..+ +.+++|++|++++|. ++.+ +. .+.++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcC
Confidence 899999999995444445889999999999999998653 35555 889999999999975 5533 32 34578
Q ss_pred CCCCEEeccCCCCCcccc--hhhhcCccccceeccccCCCCCC
Q 038390 188 KFPSTLNFSGLLKFRLFP--EIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 188 ~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++|++|++++ +.++..+ ..+..+++|++|++++|.|+.+|
T Consensus 228 ~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 228 VQLQGLDLSH-NSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp CCCSEEECTT-SCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC
T ss_pred CCCCEEECCC-CcCCcccchhhhhhcCCCCEEECCCCccChhh
Confidence 9999999999 4566543 45667899999999999999887
No 90
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.43 E-value=7.1e-13 Score=117.37 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=90.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L 190 (228)
+.++++|++|++++|...+..|..++++++|++|++++|.+..+ |..++.+++|++|++++|. +..+ |..++++++|
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTL 131 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcc
Confidence 78889999999999854455578889999999999999988876 6678899999999999875 4555 6678899999
Q ss_pred CEEeccCCCCCccc--chhhhcCccccceeccccCCCCC
Q 038390 191 STLNFSGLLKFRLF--PEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 191 ~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~n~l~~l 227 (228)
++|++++ +.+..+ |..+ .+++|++|++++|.++.+
T Consensus 132 ~~L~L~~-n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 132 ESLYLGS-NHISSIKLPKGF-PTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp CEEECCS-SCCCCCCCCTTC-CCTTCCEEECCSSCCCEE
T ss_pred cEEECCC-CcccccCccccc-CCcccCEEEcccCccccc
Confidence 9999998 456654 4444 489999999999988754
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=1.9e-13 Score=111.66 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=41.4
Q ss_pred cCCCCcceEEccCCcccccchh----cCCCCCCcEEeccCCCCCCccCcccCCC---CCCCEEeccCCCCCcccchhhhc
Q 038390 138 GNMKFLRQLLLDGTDIKGLLLS----IVLLSGIVQLNLKGCKNIECLPNFISAL---KFPSTLNFSGLLKFRLFPEIMGC 210 (228)
Q Consensus 138 ~~l~~L~~L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~~~~~lp~~~~~l---~~L~~L~l~~c~~l~~lp~~~~~ 210 (228)
+.+++|++|++++|.++.+|.. ++.+++|++|++++|......|..++.+ ++|++|++++ +.++.+|..+.
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~- 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP- 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC-
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc-
Confidence 3444455555555544433321 2444555555555543222224444444 3555555555 34445554442
Q ss_pred CccccceeccccCCCCC
Q 038390 211 IEHLLALRLLGTAIRGL 227 (228)
Q Consensus 211 l~~L~~L~l~~n~l~~l 227 (228)
++|+.|++++|.|+++
T Consensus 272 -~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp -SCCSCEECCSCCCCSC
T ss_pred -CCCCEEECCCCcCCCC
Confidence 4555555555555544
No 92
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.42 E-value=1.7e-12 Score=107.18 Aligned_cols=109 Identities=15% Similarity=0.244 Sum_probs=83.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|++|++++| .+..+|. +..+++|++|++++|.+..+| .+..+++|++|++++|. +..+|. +..+++|++
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLTKMYS 136 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCCceeE
Confidence 677888888888887 5666666 778888888888888887775 57788888888888764 556665 778888888
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++++|.....++. ++.+++|++|++++|.+..+
T Consensus 137 L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~ 170 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDV 170 (347)
T ss_dssp EECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCCcccccc-hhhCCCCcEEEecCCCcCCc
Confidence 88888666665554 77888888888888877654
No 93
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.42 E-value=6.9e-13 Score=117.46 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=89.2
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L 190 (228)
+.++++|++|++++|...+..|..++.+++|++|++++|.+..+ |..++.+++|++|++++|. +..+ ++.+..+++|
T Consensus 77 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 155 (606)
T 3t6q_A 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKL 155 (606)
T ss_dssp TTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTC
T ss_pred ccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCccc
Confidence 77889999999999855555577888999999999999998887 5678889999999999875 4443 2334458999
Q ss_pred CEEeccCCCCCccc-chhhhcCcccc--ceeccccCCCCC
Q 038390 191 STLNFSGLLKFRLF-PEIMGCIEHLL--ALRLLGTAIRGL 227 (228)
Q Consensus 191 ~~L~l~~c~~l~~l-p~~~~~l~~L~--~L~l~~n~l~~l 227 (228)
++|++++ +.++.+ |..++.+++|+ .|++++|.++.+
T Consensus 156 ~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 156 KVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp CEEECCS-SCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred CEEEccc-CcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 9999998 455555 56788888888 888999988754
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.41 E-value=1.4e-12 Score=114.72 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=63.7
Q ss_pred CCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEe
Q 038390 117 KSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLN 194 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 194 (228)
++|++|++++|. +..+ |..++.+++|++|++++|.++.+ |..++.+++|++|++++|. ++.+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--ccccCCEEE
Confidence 566666666663 3333 34666666666666666666665 4456666666666666643 4566654 566666666
Q ss_pred ccCCCCCccc--chhhhcCccccceeccccCCC
Q 038390 195 FSGLLKFRLF--PEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 195 l~~c~~l~~l--p~~~~~l~~L~~L~l~~n~l~ 225 (228)
+++ +.+..+ |..++.+++|++|++++|.++
T Consensus 128 Ls~-N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 128 LSF-NDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CCS-SCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCC-CCccccCchHhhcccCcccEEecCCCccc
Confidence 666 344443 356666666666666666654
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=1.5e-12 Score=115.55 Aligned_cols=109 Identities=24% Similarity=0.264 Sum_probs=73.2
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|+.|+|++| .+..+| .+..+++|+.|+|++|.+..+| .+..+++|+.|+|++|. +..+ ..++.+++|+.
T Consensus 83 l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~ 157 (605)
T 1m9s_A 83 LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDT 157 (605)
T ss_dssp GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSE
T ss_pred hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCE
Confidence 556666777777766 455554 4666777777777777776654 46667777777777753 4445 44677777777
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|+|++ +.+..+++ +..+++|+.|+|++|.|+.+|
T Consensus 158 L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 158 LSLED-NQISDIVP-LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp EECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred EECcC-CcCCCchh-hccCCCCCEEECcCCCCCCCh
Confidence 77777 45555555 777788888888888776553
No 96
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.41 E-value=6.4e-13 Score=111.71 Aligned_cols=113 Identities=14% Similarity=0.229 Sum_probs=97.2
Q ss_pred ccccCCccEEEccCCCCCcccchh-hcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCcc-CcccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEI-VGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECL-PNFISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~ 189 (228)
-..+++++.|++++| .++.+|.. +..+++|++|++++|.+..+|. .+..+++|++|++++|. ++.+ |..++++++
T Consensus 41 ~~~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 41 DITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPL 118 (390)
T ss_dssp SGGGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred ccccCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCC
Confidence 346789999999998 67788765 6889999999999999998865 78999999999999976 5555 556899999
Q ss_pred CCEEeccCCCCCcccchh-hhcCccccceeccccCCCCCC
Q 038390 190 PSTLNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++|++++ +.++.+|.. ++.+++|++|++++|.++.+|
T Consensus 119 L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 119 LTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCEEECCC-CccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99999999 578888876 589999999999999998654
No 97
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.1e-15 Score=115.54 Aligned_cols=116 Identities=23% Similarity=0.184 Sum_probs=89.4
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCcc
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECL 180 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~l 180 (228)
.++.++.. +..+++|++|++++| .+..+| .+..+++|++|++++|.+..+|..+..+++|+.|++++| .++.+
T Consensus 36 ~l~~l~~~----~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l 108 (198)
T 1ds9_A 36 PIEKMDAT----LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASL 108 (198)
T ss_dssp TCCCCHHH----HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCH
T ss_pred cHhhhhHH----HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcC
Confidence 45556655 788888888888887 566677 778888888888888888888877777788888888886 45666
Q ss_pred CcccCCCCCCCEEeccCCCCCcccch--hhhcCccccceeccccCCC
Q 038390 181 PNFISALKFPSTLNFSGLLKFRLFPE--IMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 181 p~~~~~l~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~n~l~ 225 (228)
| .++.+++|++|++++ +.++.+|. .++.+++|++|++++|.++
T Consensus 109 ~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp H-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred C-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 6 477788888888888 56666654 6778888888888888663
No 98
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.41 E-value=5.9e-13 Score=116.48 Aligned_cols=119 Identities=19% Similarity=0.196 Sum_probs=98.6
Q ss_pred cccccccccccccccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCC
Q 038390 100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNI 177 (228)
Q Consensus 100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~ 177 (228)
..++.+|.. +. ++|++|++++|. +..+ |..++.+++|++|++++|.+..++ ..++.+++|++|++++|. +
T Consensus 15 ~~l~~ip~~----~~--~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l 86 (549)
T 2z81_A 15 RSFTSIPSG----LT--AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-L 86 (549)
T ss_dssp SCCSSCCSC----CC--TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-C
T ss_pred Ccccccccc----CC--CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-c
Confidence 356777764 43 789999999995 5554 678999999999999999999886 578999999999999975 5
Q ss_pred CccCc-ccCCCCCCCEEeccCCCCCc--ccchhhhcCccccceeccccC-CCCC
Q 038390 178 ECLPN-FISALKFPSTLNFSGLLKFR--LFPEIMGCIEHLLALRLLGTA-IRGL 227 (228)
Q Consensus 178 ~~lp~-~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~n~-l~~l 227 (228)
..+|. .++++++|++|++++| .++ ..|..++.+++|++|++++|. +..+
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred CccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCcccccc
Confidence 55655 5999999999999995 565 457789999999999999998 4444
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=1.3e-12 Score=116.10 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=78.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|+.|+|++| .+..++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|. +..+++ +..+++|+.
T Consensus 105 l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~ 179 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQN 179 (605)
T ss_dssp STTCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCCE
T ss_pred hccCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-hccCCCCCE
Confidence 667777888888877 455554 367778888888888877777 467777888888888764 455544 777788888
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|+|++ +.+..+| .+..+++|+.|+|++|.+...|
T Consensus 180 L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 180 LYLSK-NHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp EECCS-SCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred EECcC-CCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 88887 4566665 4677788888888888766543
No 100
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.40 E-value=1.3e-12 Score=114.94 Aligned_cols=112 Identities=19% Similarity=0.213 Sum_probs=69.7
Q ss_pred ccccCCccEEEccCCCCCccc---chhhcCCCCcceEEccCCcccc-cchh-cCCCCCCcEEeccCCCCCCccCcccCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF---PEIVGNMKFLRQLLLDGTDIKG-LLLS-IVLLSGIVQLNLKGCKNIECLPNFISAL 187 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~---p~~~~~l~~L~~L~l~~~~i~~-lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l 187 (228)
+..+++|++|++++| .+..+ |..++.+++|++|++++|.+.. +|.. +..+++|+.|++++|...+..|..+.
T Consensus 373 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 373 CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--
T ss_pred hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--
Confidence 566777777777777 44433 3456777777777777777765 6543 45566666666666543333343322
Q ss_pred CCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 188 KFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 188 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++|+.|++++ +.++.+|..+..+++|+.|++++|.|+.+|
T Consensus 450 ~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~ 489 (562)
T 3a79_B 450 PKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASNQLKSVP 489 (562)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred CcCCEEECCC-CcCcccChhhcCCCCCCEEECCCCCCCCCC
Confidence 4666666666 356666666666667777777777666655
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.40 E-value=7.4e-13 Score=108.47 Aligned_cols=110 Identities=13% Similarity=0.015 Sum_probs=72.6
Q ss_pred ccccCCccEEEccCCCCCcccchhh-cCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIV-GNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|++|++++|......|..+ +.+++|++|++++|.++.+|.. ..+++|+.|++++| .++.+|..+..+++|+
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~ 217 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVT 217 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS-CCCEECGGGGGGTTCS
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCC-cCCcchhhhcccCccc
Confidence 4556677777777763222233433 3567777777777777666533 34677777777775 4566666677777777
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
.|++++ +.++.+|..++.+++|+.|++++|.++
T Consensus 218 ~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 218 WISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EEECTT-SCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred EEECcC-CcccchhhHhhcCCCCCEEEccCCCcc
Confidence 777777 466677777777777777777777765
No 102
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.40 E-value=9e-13 Score=115.69 Aligned_cols=112 Identities=18% Similarity=0.218 Sum_probs=73.1
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccc--ccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIK--GLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 190 (228)
+..+++|++|++++|...+..|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|......|..++.+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 445566666666666444445566666777777777777665 466667777777777777765433336667777777
Q ss_pred CEEeccCCCCCcccc-hhhhcCccccceeccccCCC
Q 038390 191 STLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~ 225 (228)
++|++++| .++.+| ..++.+++|+.|++++|.++
T Consensus 497 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 497 QVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCccc
Confidence 77777774 455444 45677777777777777765
No 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=1.2e-12 Score=116.20 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=86.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
+..+++|++|+|++|...+..|..++.+++|++|++++|.+..+|.. ++.+++|++|++++|......|..++.+++|+
T Consensus 95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 78899999999999954444455679999999999999999999877 48999999999999865444456789999999
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
+|++++ +.+..+| ++.+++|+.|++++|.++
T Consensus 175 ~L~L~~-N~l~~~~--~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 175 NLQLSS-NRLTHVD--LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp EEECTT-SCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred EEECcC-CCCCCcC--hhhhhhhhhhhcccCccc
Confidence 999999 5666665 444566666665555554
No 104
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.39 E-value=4.4e-13 Score=110.38 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=80.6
Q ss_pred ccccCCccEEEccCCCCC--cccchhhcCC--------------------CCcceEEccCCcccccc-hhcCCCCCCcEE
Q 038390 113 LIFMKSPKTLILSGCSKL--KKFPEIVGNM--------------------KFLRQLLLDGTDIKGLL-LSIVLLSGIVQL 169 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l--~~~p~~~~~l--------------------~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L 169 (228)
+..+++|++|++++|..- +..|..++.+ ++|++|++++|.+..++ ..+..+++|+.|
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L 222 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL 222 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 566777888888877331 1234444333 35666666666666654 467778888888
Q ss_pred eccCCCCCCcc-CcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 170 NLKGCKNIECL-PNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 170 ~l~~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++++|. ++.+ |..++.+++|+.|++++ +.++.+|..++.+++|+.|++++|.|+.+|
T Consensus 223 ~L~~N~-l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 223 GLGHNQ-IRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp BCCSSC-CCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred ECCCCc-CCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCCCCCccC
Confidence 888865 4444 44678888888888888 567788888888888899999888888664
No 105
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.39 E-value=1.9e-12 Score=106.49 Aligned_cols=111 Identities=17% Similarity=0.298 Sum_probs=72.7
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCc-ccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPN-FISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~ 191 (228)
+..+++|++|++++|...+..|..++.+++|++|++++|.+..+|..+. ++|++|++++|. ++.+|. .+.++++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCC
Confidence 6677778888887774333336677777788888888887777776555 677777777754 455544 467777788
Q ss_pred EEeccCCCCCc---ccchhhhcCccccceeccccCCCCCC
Q 038390 192 TLNFSGLLKFR---LFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 192 ~L~l~~c~~l~---~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|++++| .++ ..|..++.+ +|+.|++++|.++.+|
T Consensus 151 ~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 151 CIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp EEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred EEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 8887773 343 334455555 5666666666655544
No 106
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=112.42 Aligned_cols=113 Identities=16% Similarity=0.136 Sum_probs=56.1
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccC-cccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLP-NFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L 190 (228)
+..+++|+.|++++|..++.+|.......+|++|++++|.++.+|. .+..+++|+.|++++|. +..++ ..+..+++|
T Consensus 196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 274 (477)
T 2id5_A 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRL 274 (477)
T ss_dssp SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTC
T ss_pred cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccC
Confidence 4445555555555555445444444444455555555555555542 34555555555555543 23332 234455555
Q ss_pred CEEeccCCCCCccc-chhhhcCccccceeccccCCCCC
Q 038390 191 STLNFSGLLKFRLF-PEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 191 ~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~n~l~~l 227 (228)
+.|++++| .+..+ |..+..+++|+.|++++|.|+.+
T Consensus 275 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 275 QEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp CEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred CEEECCCC-ccceECHHHhcCcccCCEEECCCCcCcee
Confidence 55555552 23322 34455555555555555555443
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.39 E-value=1.5e-12 Score=112.04 Aligned_cols=100 Identities=16% Similarity=0.131 Sum_probs=82.9
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++.+++|++|++++|. ++.+| ++.+++|++
T Consensus 60 l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 60 IEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTY 131 (457)
T ss_dssp GGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred hcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCE
Confidence 788889999999988 576676 788889999999999888876 7888999999999864 56665 788899999
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTA 223 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~ 223 (228)
|++++ +.++.+| ++.+++|+.|++++|.
T Consensus 132 L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 132 LNCAR-NTLTEID--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp EECTT-SCCSCCC--CTTCTTCCEEECTTCS
T ss_pred EECCC-Cccceec--cccCCcCCEEECCCCC
Confidence 99998 5667665 7788899999999884
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.39 E-value=1.2e-12 Score=113.59 Aligned_cols=110 Identities=13% Similarity=0.009 Sum_probs=57.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhc-CCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVG-NMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPS 191 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 191 (228)
++.+++|++|++++|...+..|..+. .+++|++|++++|.++.+|. ...+++|+.|++++| .++.+|+.++.+++|+
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~ 217 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVT 217 (487)
T ss_dssp GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCS
T ss_pred hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCC-CCCCCCHhHcCCCCcc
Confidence 34455555555555532233343333 45555555555555555543 223555555555554 3444555555555666
Q ss_pred EEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 192 TLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
.|++++ +.+..+|..++.+++|+.|++++|.+.
T Consensus 218 ~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 218 WISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECTT-SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred EEEecC-CcCcccchhhccCCCCCEEEcCCCCCc
Confidence 666655 445555555555556666666665544
No 109
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.38 E-value=4.2e-12 Score=113.93 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=81.2
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch---------hcCCCCCCcEEeccCCCCCCccCc
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL---------SIVLLSGIVQLNLKGCKNIECLPN 182 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~---------~~~~l~~L~~L~l~~~~~~~~lp~ 182 (228)
+..+++|++|++++| .+..+| ..++.+++|++|++++|.+..++. .++.+++|+.|++++| .++.+|.
T Consensus 476 ~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~ 553 (680)
T 1ziw_A 476 FQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV 553 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred cccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH
Confidence 667778888888887 444444 457778888888888887776532 2567778888888875 4556765
Q ss_pred -ccCCCCCCCEEeccCCCCCcccchh-hhcCccccceeccccCCCCCC
Q 038390 183 -FISALKFPSTLNFSGLLKFRLFPEI-MGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 183 -~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~n~l~~lP 228 (228)
.+.++++|+.|++++ +.++.+|.. +..+++|+.|++++|.|+.+|
T Consensus 554 ~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred HHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 467788888888877 567777754 577788888888888877654
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=1.3e-12 Score=113.36 Aligned_cols=113 Identities=13% Similarity=0.011 Sum_probs=95.7
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhcC-CCCCCcEEeccCCCCCCccCcccCCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSIV-LLSGIVQLNLKGCKNIECLPNFISALKFP 190 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L 190 (228)
...+++|+.|++++|...+..|..++.+++|++|++++|.+..+ |..+. .+++|+.|++++|. ++.+|. ...+++|
T Consensus 116 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L 193 (487)
T 3oja_A 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAKL 193 (487)
T ss_dssp ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTTC
T ss_pred ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCCC
Confidence 44578999999999954455577889999999999999999875 55665 79999999999975 666655 4469999
Q ss_pred CEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 191 STLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 191 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+.|++++ +.++.+|+.++.+++|+.|++++|.|+.+|
T Consensus 194 ~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 194 KTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp CEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CEEECCC-CCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence 9999999 678889888999999999999999998766
No 111
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.37 E-value=4.2e-12 Score=95.19 Aligned_cols=106 Identities=19% Similarity=0.289 Sum_probs=89.0
Q ss_pred CccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCCccCc-ccCCCCCCCEEec
Q 038390 118 SPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIECLPN-FISALKFPSTLNF 195 (228)
Q Consensus 118 ~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l 195 (228)
+.+.++++++ .+..+|..+. ++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|. .+..+++|++|++
T Consensus 8 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSK-GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSS-CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCC-CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEEC
Confidence 3578888887 6888886543 6899999999999998765 6889999999999974 667765 4689999999999
Q ss_pred cCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390 196 SGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 196 ~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++ +.++.+|. .++.+++|++|++++|.|+.+|
T Consensus 84 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 84 HE-NKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp CS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CC-CCccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 99 67777775 5789999999999999998876
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=5.1e-13 Score=109.09 Aligned_cols=114 Identities=19% Similarity=0.120 Sum_probs=84.2
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccc---cchh--cCCCCCCcEEeccCCCCCCccCcc----
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKG---LLLS--IVLLSGIVQLNLKGCKNIECLPNF---- 183 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~---lp~~--~~~l~~L~~L~l~~~~~~~~lp~~---- 183 (228)
+..+++|++|++++|......|..++.+++|++|++++|.+.. ++.. ++.+++|++|++++|. ++.+|..
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH
Confidence 3457888888888885444445678888889999998887653 4332 3678888889988864 5555542
Q ss_pred cCCCCCCCEEeccCCCCCccc-chhhhcC---ccccceeccccCCCCCC
Q 038390 184 ISALKFPSTLNFSGLLKFRLF-PEIMGCI---EHLLALRLLGTAIRGLP 228 (228)
Q Consensus 184 ~~~l~~L~~L~l~~c~~l~~l-p~~~~~l---~~L~~L~l~~n~l~~lP 228 (228)
++.+++|++|++++ +.++.+ |+.++.+ ++|++|++++|.|+.+|
T Consensus 220 ~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 220 AAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp HHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence 46778899999998 455554 7777766 68999999999998876
No 113
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.37 E-value=2.8e-14 Score=105.06 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=56.7
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC--------------chhhhhccccHHHHHHH
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN--------------TSLVRKHIGSFQEAIVN 61 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~--------------ps~vr~q~g~f~~af~~ 61 (228)
|+.|.+++.+||++|+++|+|+|++|+.|.||++|+..+++|.. |++||+|+|.|+++|..
T Consensus 60 G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 60 GDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp TCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred ccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 78899999999999999999999999999999999999999864 99999999999886653
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.36 E-value=4.7e-12 Score=108.90 Aligned_cols=105 Identities=17% Similarity=0.040 Sum_probs=62.5
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
++.+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++.+++|++|++++|. ++.++ ++.+++|++
T Consensus 81 ~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~ 152 (457)
T 3bz5_A 81 LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTE 152 (457)
T ss_dssp CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCE
T ss_pred cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCE
Confidence 566677777777776 455554 666777777777777766665 6666677777776653 34443 555555666
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
|++++|..++.++ ++.+++|+.|++++|.++++
T Consensus 153 L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 153 LDCHLNKKITKLD--VTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp EECTTCSCCCCCC--CTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCCcccccc--cccCCcCCEEECCCCcccee
Confidence 6655544444442 44455555555555555444
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=118.99 Aligned_cols=120 Identities=17% Similarity=0.030 Sum_probs=98.5
Q ss_pred ccccccccccccccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCC-ccccc-chhcCCCCCCcEEeccCCCCCC
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT-DIKGL-LLSIVLLSGIVQLNLKGCKNIE 178 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~-~i~~l-p~~~~~l~~L~~L~l~~~~~~~ 178 (228)
+++.+|. -.++|++|+|++|..-+..|..+.++++|++|++++| .+..+ |..++++++|++|+|++|....
T Consensus 15 ~L~~vP~-------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 15 NLTQVPQ-------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CSSCCCS-------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCC-------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 4555653 3468999999999544445788999999999999999 55677 6789999999999999986555
Q ss_pred ccCcccCCCCCCCEEeccCCCCCcccchh--hhcCccccceeccccCCCCC
Q 038390 179 CLPNFISALKFPSTLNFSGLLKFRLFPEI--MGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 179 ~lp~~~~~l~~L~~L~l~~c~~l~~lp~~--~~~l~~L~~L~l~~n~l~~l 227 (228)
..|..++++++|++|++++|.....+|.. ++.+++|++|++++|.++++
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 55889999999999999996544456655 89999999999999999865
No 116
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.35 E-value=2.3e-12 Score=105.55 Aligned_cols=112 Identities=14% Similarity=0.045 Sum_probs=90.9
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccc-hhc-CCCCCCcEEeccCCCCCCccCcccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLL-LSI-VLLSGIVQLNLKGCKNIECLPNFISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp-~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 189 (228)
...+++|++|++++| .+..+ |..++.+++|++|++++|.+..++ ..+ ..+++|++|++++|. ++.+|. ...+++
T Consensus 116 ~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~l~~ 192 (317)
T 3o53_A 116 CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAK 192 (317)
T ss_dssp ECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTT
T ss_pred ccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc-cccccc
Confidence 345677888888888 45444 557888999999999999998764 444 478999999999974 666765 345899
Q ss_pred CCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 190 PSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++|++++ +.++.+|+.+..+++|+.|++++|.|+.+|
T Consensus 193 L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 193 LKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp CCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CCEEECCC-CcCCcchhhhcccCcccEEECcCCcccchh
Confidence 99999999 678899888999999999999999998765
No 117
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=4.5e-12 Score=104.91 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=53.5
Q ss_pred EEccCCCCCcccchhhcCCCCcceEEccC-Ccccccc-hhcCCCCCCcEEeccCCCCCCcc-CcccCCCCCCCEEeccCC
Q 038390 122 LILSGCSKLKKFPEIVGNMKFLRQLLLDG-TDIKGLL-LSIVLLSGIVQLNLKGCKNIECL-PNFISALKFPSTLNFSGL 198 (228)
Q Consensus 122 L~ls~~~~l~~~p~~~~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~l~~c 198 (228)
++.++++.+..+|. ++.+++|++|+|++ |.+..+| ..++.|++|+.|+|++|. ++.+ |..|.++++|+.|+|++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~- 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF- 89 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS-
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC-
Confidence 34444434555555 55556666666654 5665554 345556666666666543 3333 33455566666666665
Q ss_pred CCCcccchhhhcCccccceeccccCCC
Q 038390 199 LKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 199 ~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
|.++.+|..+.....|+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCcc
Confidence 455555543222222666666666554
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.29 E-value=2.4e-11 Score=104.48 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=24.7
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKG 173 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~ 173 (228)
+..+++|++|++++| .+..++. +..+++|++|++++|.+..+|. +..+++|+.|++++
T Consensus 239 l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 296 (466)
T 1o6v_A 239 LASLTNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNE 296 (466)
T ss_dssp GGGCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred hhcCCCCCEEECCCC-ccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCC
Confidence 334444444444444 2333322 3444444444444444444433 34444444444444
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.29 E-value=1.6e-11 Score=105.68 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=55.6
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCE
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPST 192 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 192 (228)
+..+++|+.|++++| .+..++. ++.+++|++|++++|.+..+++ +..+++|+.|++++|. +..++ .+..+++|+.
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~ 357 (466)
T 1o6v_A 283 LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVS-SLANLTNINW 357 (466)
T ss_dssp GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCE
T ss_pred ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCch-hhccCCCCCE
Confidence 334444555555544 3333333 4445555555555555554443 4455555555555542 33332 3555666666
Q ss_pred EeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 193 LNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 193 L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
|++++| .+..+++ ++.+++|+.|++++|.++.+|
T Consensus 358 L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 358 LSAGHN-QISDLTP-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp EECCSS-CCCBCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred EeCCCC-ccCccch-hhcCCCCCEEeccCCcccCCc
Confidence 666663 3343333 556666666666666655543
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.28 E-value=2.7e-12 Score=105.56 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=61.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCC-ccc--ccchhcCCCCCCcEEeccCCCCCCc--cCcccCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGT-DIK--GLLLSIVLLSGIVQLNLKGCKNIEC--LPNFISAL 187 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~~~~~~--lp~~~~~l 187 (228)
+..+++|++|++++|......|..++.+++|++|++++| .++ .+|..+..+++|+.|++++|..++. ++..+..+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 445556666666665333344555555666666666665 444 2454455566666666666533332 34445556
Q ss_pred C-CCCEEeccCCC-CC--cccchhhhcCccccceeccccC
Q 038390 188 K-FPSTLNFSGLL-KF--RLFPEIMGCIEHLLALRLLGTA 223 (228)
Q Consensus 188 ~-~L~~L~l~~c~-~l--~~lp~~~~~l~~L~~L~l~~n~ 223 (228)
+ +|++|++++|. .+ ..+|..++.+++|+.|++++|.
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 6 66666666643 22 3455555666666666666665
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.27 E-value=2.1e-11 Score=104.72 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=51.6
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-------------------hcCCCCCCcEEeccCCCCC
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-------------------SIVLLSGIVQLNLKGCKNI 177 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-------------------~~~~l~~L~~L~l~~~~~~ 177 (228)
++|++|++++| .+..+| .++.+++|++|++++|.++.+|. .++.+++|+.|++++|. +
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~-l 207 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-L 207 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-C
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc-C
Confidence 35555555555 344455 35555555555555555554443 24444444444444432 2
Q ss_pred CccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 178 ECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 178 ~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+.+|... ++|++|++++ +.++.+|+ ++.+++|++|++++|.++.+|
T Consensus 208 ~~l~~~~---~~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 208 KKLPDLP---LSLESIVAGN-NILEELPE-LQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp SSCCCCC---TTCCEEECCS-SCCSSCCC-CTTCTTCCEEECCSSCCSSCC
T ss_pred CcCCCCc---CcccEEECcC-CcCCcccc-cCCCCCCCEEECCCCcCCccc
Confidence 2233211 2444444444 23445553 566666666666666666554
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=2.4e-11 Score=107.02 Aligned_cols=98 Identities=22% Similarity=0.276 Sum_probs=65.3
Q ss_pred cCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEec
Q 038390 116 MKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNF 195 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l 195 (228)
+++|++|++++| .+..+|. +.. +|++|++++|.++.+|. .+++|+.|++++|. ++.+|. .+++|+.|++
T Consensus 99 l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 99 PASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSV 167 (571)
T ss_dssp CTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEEC
T ss_pred cCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEEC
Confidence 456666677666 4555665 443 66777777777666665 56677777777653 455665 4567777777
Q ss_pred cCCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 196 SGLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 196 ~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
++ |.++.+|. ++ ++|+.|+|++|.|+.+|
T Consensus 168 s~-N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 168 RN-NQLTFLPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp CS-SCCSCCCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CC-CCCCCcch-hh--CCCCEEECcCCCCCchh
Confidence 77 45666776 54 77788888888777765
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=3.4e-12 Score=107.17 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=92.2
Q ss_pred ccccCCccEEEccCCCCCc------ccchhhcCCCCcceEEccCCcc-----cccchhcCCCCCCcEEeccCCCCCCc--
Q 038390 113 LIFMKSPKTLILSGCSKLK------KFPEIVGNMKFLRQLLLDGTDI-----KGLLLSIVLLSGIVQLNLKGCKNIEC-- 179 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~------~~p~~~~~l~~L~~L~l~~~~i-----~~lp~~~~~l~~L~~L~l~~~~~~~~-- 179 (228)
+..+++|++|++++| .+. .+|..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.....
T Consensus 183 l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 667889999999999 555 2444788999999999999998 56788899999999999999864332
Q ss_pred --cCccc--CCCCCCCEEeccCCCCCcc-----cchhh-hcCccccceeccccCCCC
Q 038390 180 --LPNFI--SALKFPSTLNFSGLLKFRL-----FPEIM-GCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 180 --lp~~~--~~l~~L~~L~l~~c~~l~~-----lp~~~-~~l~~L~~L~l~~n~l~~ 226 (228)
+|..+ +.+++|++|++++| .++. +|..+ .++++|+.|++++|.++.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 46666 45899999999995 5665 88877 678999999999999974
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=3.5e-11 Score=90.18 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=79.9
Q ss_pred ccccccccccccccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCCC
Q 038390 101 SRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNIE 178 (228)
Q Consensus 101 ~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~ 178 (228)
.++.+|.. +. ++|++|++++|. +..+ |..++.+++|++|+|++|.++.+|.. +..+++|+.|++++| .++
T Consensus 23 ~l~~iP~~----~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~ 94 (174)
T 2r9u_A 23 RLASVPAG----IP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLK 94 (174)
T ss_dssp CCSSCCSC----CC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred CCCccCCC----cC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccc
Confidence 45566654 43 789999999994 5555 77899999999999999999999876 589999999999996 567
Q ss_pred ccCcc-cCCCCCCCEEeccCCCCCcccch
Q 038390 179 CLPNF-ISALKFPSTLNFSGLLKFRLFPE 206 (228)
Q Consensus 179 ~lp~~-~~~l~~L~~L~l~~c~~l~~lp~ 206 (228)
.+|.. +..+++|++|++++ |.+...|.
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~-N~~~c~~~ 122 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYN-NPWDCECR 122 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCS-SCBCTTBG
T ss_pred eeCHHHhccccCCCEEEeCC-CCcccccc
Confidence 78765 88999999999999 56665554
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=3.9e-14 Score=108.40 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=88.8
Q ss_pred ccEEEccCC-CCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccC
Q 038390 119 PKTLILSGC-SKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSG 197 (228)
Q Consensus 119 L~~L~ls~~-~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~ 197 (228)
|+.+.++++ ..++.+|..++.+++|++|++++|.+..+| .+..+++|++|++++|. ++.+|..+..+++|++|++++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcC
Confidence 344455443 246677779999999999999999999998 88999999999999974 678898888889999999999
Q ss_pred CCCCcccchhhhcCccccceeccccCCCCC
Q 038390 198 LLKFRLFPEIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 198 c~~l~~lp~~~~~l~~L~~L~l~~n~l~~l 227 (228)
+.++.+| .++.+++|+.|++++|.++.+
T Consensus 103 -N~l~~l~-~~~~l~~L~~L~l~~N~i~~~ 130 (198)
T 1ds9_A 103 -NQIASLS-GIEKLVNLRVLYMSNNKITNW 130 (198)
T ss_dssp -EECCCHH-HHHHHHHSSEEEESEEECCCH
T ss_pred -CcCCcCC-ccccCCCCCEEECCCCcCCch
Confidence 5778887 688999999999999999864
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=2.7e-11 Score=106.78 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=42.1
Q ss_pred CCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCC-------CEEeccCCCCCcccchhhhcCc
Q 038390 140 MKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFP-------STLNFSGLLKFRLFPEIMGCIE 212 (228)
Q Consensus 140 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L-------~~L~l~~c~~l~~lp~~~~~l~ 212 (228)
+++|++|++++|.++.+|. +. ++|+.|++++| .++.+|. +.. +| +.|++++ |.++.+|..+..++
T Consensus 159 l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLD 230 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSC
T ss_pred CCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCC
Confidence 3444445555554444444 33 45555555554 3445555 333 45 6666666 45566666666666
Q ss_pred cccceeccccCCC
Q 038390 213 HLLALRLLGTAIR 225 (228)
Q Consensus 213 ~L~~L~l~~n~l~ 225 (228)
+|+.|++++|.++
T Consensus 231 ~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 231 PTCTIILEDNPLS 243 (571)
T ss_dssp TTEEEECCSSSCC
T ss_pred CCCEEEeeCCcCC
Confidence 6777777766665
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.21 E-value=7e-11 Score=105.17 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=62.1
Q ss_pred ccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEe
Q 038390 115 FMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLN 194 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 194 (228)
.+++|++|++++| .++.+|. .+++|++|++++|.++.+|. .+++|+.|++++| .++.+|.. +++|++|+
T Consensus 79 ~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~---l~~L~~L~ 147 (622)
T 3g06_A 79 LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL---PPGLQELS 147 (622)
T ss_dssp CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS-CCSCCCCC---CTTCCEEE
T ss_pred cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC-CCCcCCCC---CCCCCEEE
Confidence 3456666666666 4555665 45666677777766666665 4566777777765 35556653 36777888
Q ss_pred ccCCCCCcccchhhhcC-----------------ccccceeccccCCCCCC
Q 038390 195 FSGLLKFRLFPEIMGCI-----------------EHLLALRLLGTAIRGLP 228 (228)
Q Consensus 195 l~~c~~l~~lp~~~~~l-----------------~~L~~L~l~~n~l~~lP 228 (228)
+++ +.++.+|..+..+ ++|+.|++++|.|+++|
T Consensus 148 Ls~-N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~ 197 (622)
T 3g06_A 148 VSD-NQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLP 197 (622)
T ss_dssp CCS-SCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC
T ss_pred CcC-CcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCC
Confidence 877 4556555433222 55566666666666554
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=9.2e-11 Score=87.46 Aligned_cols=94 Identities=19% Similarity=0.256 Sum_probs=77.5
Q ss_pred cccccccccccccccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCCCC
Q 038390 100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCKNI 177 (228)
Q Consensus 100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~ 177 (228)
..++.+|.. + .++|++|+|++| .+..+ |..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +
T Consensus 19 n~l~~ip~~----~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l 90 (170)
T 3g39_A 19 KSLASVPTG----I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-L 90 (170)
T ss_dssp SCCSSCCSC----C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred CCcCccCcc----C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-c
Confidence 355666654 4 378999999999 55555 77899999999999999999999876 5899999999999974 6
Q ss_pred CccCc-ccCCCCCCCEEeccCCCCCc
Q 038390 178 ECLPN-FISALKFPSTLNFSGLLKFR 202 (228)
Q Consensus 178 ~~lp~-~~~~l~~L~~L~l~~c~~l~ 202 (228)
+.+|. .+..+++|++|++++ |.+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~-N~~~ 115 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLN-NPWD 115 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCS-SCBC
T ss_pred CEeCHHHhcCCCCCCEEEeCC-CCCC
Confidence 77766 588999999999999 5444
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.20 E-value=8.2e-12 Score=102.60 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=94.5
Q ss_pred ccccCCccEEEccCCCCCcc-cchhhcCCCCcceEEccCCccc-ccchhcCCCCCCcEEeccCCCCCC--ccCcccCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKK-FPEIVGNMKFLRQLLLDGTDIK-GLLLSIVLLSGIVQLNLKGCKNIE--CLPNFISALK 188 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~-~p~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~l~ 188 (228)
+..+++|++|++++|..... +|..+..+++|++|++++|.+. ..|..++.+++|++|++++|..++ .+|..+.+++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 66789999999999953333 7888999999999999999887 567788899999999999986566 3677788899
Q ss_pred CCCEEeccCCCCCcc--cchhhhcCc-cccceeccccC
Q 038390 189 FPSTLNFSGLLKFRL--FPEIMGCIE-HLLALRLLGTA 223 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~--lp~~~~~l~-~L~~L~l~~n~ 223 (228)
+|++|++++|..++. +|..++.++ +|++|++++|.
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 999999999756664 788899999 99999999993
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.18 E-value=1.7e-10 Score=102.69 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=58.9
Q ss_pred CCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEeccCCCCCcccchhhhcCccccceecc
Q 038390 141 KFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLL 220 (228)
Q Consensus 141 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 220 (228)
++|+.|++++|.++.+| ..+++|+.|++++| .++.+|. .+++|+.|++++ +.++.+|+.++.+++|+.|+++
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEec
Confidence 45666666666666666 44567777888775 4566776 567888899988 5677888888999999999999
Q ss_pred ccCCCC
Q 038390 221 GTAIRG 226 (228)
Q Consensus 221 ~n~l~~ 226 (228)
+|.+++
T Consensus 293 ~N~l~~ 298 (622)
T 3g06_A 293 GNPLSE 298 (622)
T ss_dssp SCCCCH
T ss_pred CCCCCC
Confidence 998863
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.16 E-value=1.2e-10 Score=100.05 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=80.0
Q ss_pred CCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCCCccCcccCCCCCCCEEecc
Q 038390 117 KSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALKFPSTLNFS 196 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~l~ 196 (228)
++|++|++++| .+..+|.. .++|++|++++|.++.+| .++.+++|++|++++|. ++.+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCC-ccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECc
Confidence 67888888887 56666542 268999999999999988 69999999999999874 66677643 478888888
Q ss_pred CCCCCcccchhhhcCccccceeccccCCCCCC
Q 038390 197 GLLKFRLFPEIMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 197 ~c~~l~~lp~~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+ +.++.+| .++.+++|+.|++++|.++++|
T Consensus 182 ~-n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 182 N-NQLEELP-ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp S-SCCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred C-CcCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence 8 4677777 5788888888888888887665
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.15 E-value=8.2e-11 Score=97.60 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=88.4
Q ss_pred cccccccccccccccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccc-cch-hcCCCCCCcEEeccCCCC
Q 038390 100 HSRTSSHPFQNLRLIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKG-LLL-SIVLLSGIVQLNLKGCKN 176 (228)
Q Consensus 100 ~~l~~l~~~~nl~~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~-lp~-~~~~l~~L~~L~l~~~~~ 176 (228)
.+++++|.. + .+++++|+|++| .++.+|. .|.++++|++|+|++|.+.+ +|. .+.+++++..+...+++.
T Consensus 19 ~~Lt~iP~~----l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 19 SKVTEIPSD----L--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TTCCSCCTT----C--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CCCCccCcC----c--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 357777764 4 367999999998 6888875 58899999999999998754 554 467888887755554456
Q ss_pred CCcc-CcccCCCCCCCEEeccCCCCCcccch-hhhcCccccceeccc-cCCCCC
Q 038390 177 IECL-PNFISALKFPSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLG-TAIRGL 227 (228)
Q Consensus 177 ~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-n~l~~l 227 (228)
+..+ |..+..+++|++|++++ +.++.+|+ .+.....+..|++.+ +.+..+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred ccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccc
Confidence 7777 45678999999999998 56777764 445566677888865 455544
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.10 E-value=1.3e-10 Score=96.36 Aligned_cols=114 Identities=20% Similarity=0.146 Sum_probs=65.3
Q ss_pred ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccC-Ccccccch-hcCCC-CCCcEEeccCCCCCCccCcccCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDG-TDIKGLLL-SIVLL-SGIVQLNLKGCKNIECLPNFISALK 188 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l-~~L~~L~l~~~~~~~~lp~~~~~l~ 188 (228)
+..+++|++|++++| .+..+|+ .+.....+..+++.+ +.+..+|. .+..+ ..++.|++++| .++.+|..+....
T Consensus 100 f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGT 177 (350)
T ss_dssp BCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTE
T ss_pred hhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhcccc
Confidence 455666666666665 3433332 233333444455433 34444443 23333 34666666664 4566666555666
Q ss_pred CCCEEeccCCCCCcccch-hhhcCccccceeccccCCCCCC
Q 038390 189 FPSTLNFSGLLKFRLFPE-IMGCIEHLLALRLLGTAIRGLP 228 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~n~l~~lP 228 (228)
+|+.+++.+++.++.+|+ .++.+++|+.|++++|+|+.+|
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 677777766667777764 4567777777777777777665
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.07 E-value=3.7e-11 Score=100.83 Aligned_cols=109 Identities=14% Similarity=0.101 Sum_probs=83.4
Q ss_pred CCccEEEccCCCCC-cccc---hhhcCCCCcceEEccCCccc------ccchhcCCCCCCcEEeccCCCCC----CccCc
Q 038390 117 KSPKTLILSGCSKL-KKFP---EIVGNMKFLRQLLLDGTDIK------GLLLSIVLLSGIVQLNLKGCKNI----ECLPN 182 (228)
Q Consensus 117 ~~L~~L~ls~~~~l-~~~p---~~~~~l~~L~~L~l~~~~i~------~lp~~~~~l~~L~~L~l~~~~~~----~~lp~ 182 (228)
++|++|++++|..- ..+| ..+..+++|++|++++|.+. -+|..+..+++|+.|++++|... ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 78999999988433 3445 46778889999999999887 23447788899999999987632 56777
Q ss_pred ccCCCCCCCEEeccCCCCCcc-----cchhhh--cCccccceeccccCCCC
Q 038390 183 FISALKFPSTLNFSGLLKFRL-----FPEIMG--CIEHLLALRLLGTAIRG 226 (228)
Q Consensus 183 ~~~~l~~L~~L~l~~c~~l~~-----lp~~~~--~l~~L~~L~l~~n~l~~ 226 (228)
.+..+++|++|++++|. ++. +|..+. .+++|+.|+|++|.|+.
T Consensus 239 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 88888999999999854 543 466663 48899999999998864
No 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=5.5e-10 Score=92.25 Aligned_cols=83 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred ceEEccCC-cccccchhcCCCCCCcEEeccCCCCCCccC-cccCCCCCCCEEeccCCCCCcccc-hhhhcCccccceecc
Q 038390 144 RQLLLDGT-DIKGLLLSIVLLSGIVQLNLKGCKNIECLP-NFISALKFPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLL 220 (228)
Q Consensus 144 ~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~ 220 (228)
..++++++ .+..+|. ++.+++|+.|+|++++.++.+| ..|+++++|+.|+|++ |.++.+| ..++.|++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCC
Confidence 45688888 8999999 9999999999999745677776 5799999999999999 5677666 578999999999999
Q ss_pred ccCCCCCC
Q 038390 221 GTAIRGLP 228 (228)
Q Consensus 221 ~n~l~~lP 228 (228)
+|.|+.+|
T Consensus 89 ~N~l~~~~ 96 (347)
T 2ifg_A 89 FNALESLS 96 (347)
T ss_dssp SSCCSCCC
T ss_pred CCccceeC
Confidence 99999876
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.03 E-value=1.7e-10 Score=96.06 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=14.5
Q ss_pred CcceEEccCCccc-----ccchhcCCCC-CCcEEeccCC
Q 038390 142 FLRQLLLDGTDIK-----GLLLSIVLLS-GIVQLNLKGC 174 (228)
Q Consensus 142 ~L~~L~l~~~~i~-----~lp~~~~~l~-~L~~L~l~~~ 174 (228)
+|++|++++|.++ .++..+..+. +|+.|++++|
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 4555555555444 2233333333 4555555544
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.95 E-value=3.7e-10 Score=93.99 Aligned_cols=107 Identities=20% Similarity=0.185 Sum_probs=72.4
Q ss_pred CCccEEEccCCCCCcc-cchh----hcCC-CCcceEEccCCcccccch-----hcCC-CCCCcEEeccCCCCCC-----c
Q 038390 117 KSPKTLILSGCSKLKK-FPEI----VGNM-KFLRQLLLDGTDIKGLLL-----SIVL-LSGIVQLNLKGCKNIE-----C 179 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~-~p~~----~~~l-~~L~~L~l~~~~i~~lp~-----~~~~-l~~L~~L~l~~~~~~~-----~ 179 (228)
++|++|++++|. ++. .+.. +..+ ++|++|++++|.++..+. .+.. .++|++|++++|. ++ .
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHH
Confidence 788899998884 543 3333 3444 788999999988876543 2344 3689999998875 33 3
Q ss_pred cCcccCCCC-CCCEEeccCCCCCccc-ch----hhhcC-ccccceeccccCCCC
Q 038390 180 LPNFISALK-FPSTLNFSGLLKFRLF-PE----IMGCI-EHLLALRLLGTAIRG 226 (228)
Q Consensus 180 lp~~~~~l~-~L~~L~l~~c~~l~~l-p~----~~~~l-~~L~~L~l~~n~l~~ 226 (228)
++..+..++ +|++|++++| .++.. +. .+..+ ++|++|++++|.|+.
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 444455555 8999999985 45433 33 34445 589999999998864
No 138
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=98.92 E-value=3.6e-11 Score=87.40 Aligned_cols=43 Identities=14% Similarity=0.323 Sum_probs=39.8
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHhc
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEWK 43 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~ 43 (228)
|+.|.+++.+||++||.+|+|+|+||+.|.||..|+..+++|.
T Consensus 51 G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~ 93 (146)
T 3ub2_A 51 GGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEA 93 (146)
T ss_dssp --CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999985
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.92 E-value=1.9e-10 Score=98.31 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=76.6
Q ss_pred ccccCCccEEEccCCCCCcc-cchhhc-----CCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCCCCCcc-
Q 038390 113 LIFMKSPKTLILSGCSKLKK-FPEIVG-----NMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCKNIECL- 180 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~-~p~~~~-----~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~l- 180 (228)
+..+++|++|++++| .++. .+..+. ..++|++|++++|.++. +|..+..+++|+.|++++|. ++..
T Consensus 280 l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 357 (461)
T 1z7x_W 280 LRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAG 357 (461)
T ss_dssp HHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHH
T ss_pred HhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-ccccc
Confidence 455778888888887 3432 222222 22578888888887763 46667778889999998874 3332
Q ss_pred CcccC-----CCCCCCEEeccCCCCCc-----ccchhhhcCccccceeccccCCC
Q 038390 181 PNFIS-----ALKFPSTLNFSGLLKFR-----LFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 181 p~~~~-----~l~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
+..+. ..++|++|++++| .++ .+|..+..+++|++|++++|.|+
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 22222 2678999999985 455 67888888999999999999876
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.89 E-value=4.1e-10 Score=96.23 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=60.6
Q ss_pred ccCCccEEEccCCCCCcc-----cchhhcCCCCcceEEccCCccccc-----chhcC-CCCCCcEEeccCCCCCCc----
Q 038390 115 FMKSPKTLILSGCSKLKK-----FPEIVGNMKFLRQLLLDGTDIKGL-----LLSIV-LLSGIVQLNLKGCKNIEC---- 179 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l~~-----~p~~~~~l~~L~~L~l~~~~i~~l-----p~~~~-~l~~L~~L~l~~~~~~~~---- 179 (228)
.+++|++|++++| .++. ++..+..+++|++|++++|.++.. ...+. ..++|+.|++++|.....
T Consensus 254 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 254 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 3556666666666 3433 455555666666666666665422 22221 224666666666543222
Q ss_pred cCcccCCCCCCCEEeccCCCCCccc-chhhhc-----CccccceeccccCCC
Q 038390 180 LPNFISALKFPSTLNFSGLLKFRLF-PEIMGC-----IEHLLALRLLGTAIR 225 (228)
Q Consensus 180 lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~-----l~~L~~L~l~~n~l~ 225 (228)
+|..+..+++|++|++++| .++.. +..+.. .++|+.|++++|.++
T Consensus 333 l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 3445556677777777774 34432 232322 557777777777765
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=1.5e-08 Score=83.10 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=71.5
Q ss_pred CCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCCCC-EEeccCCCCCcccc-hhhhcCcccc
Q 038390 140 MKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKFPS-TLNFSGLLKFRLFP-EIMGCIEHLL 215 (228)
Q Consensus 140 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~-~L~l~~c~~l~~lp-~~~~~l~~L~ 215 (228)
+++|+.+++++|.+..+|. .+.++++|+.+++.++ +..++. .|.++++|+ .+++.+ .++.++ ..+..+++|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 6789999999999999976 4788999999999885 677765 588999999 999986 577776 6789999999
Q ss_pred ceeccccCCCCCC
Q 038390 216 ALRLLGTAIRGLP 228 (228)
Q Consensus 216 ~L~l~~n~l~~lP 228 (228)
.+++++|+++.|+
T Consensus 301 ~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 301 YVLATGDKITTLG 313 (329)
T ss_dssp EEEECSSCCCEEC
T ss_pred EEEeCCCccCccc
Confidence 9999999887654
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.80 E-value=7.7e-09 Score=91.07 Aligned_cols=111 Identities=13% Similarity=-0.011 Sum_probs=71.1
Q ss_pred ccccCCccEEEccCCCCC----cccchhhcCCCCcceEEccCCcccccchhcCCCCCCcEEeccCCCCC---CccCcccC
Q 038390 113 LIFMKSPKTLILSGCSKL----KKFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLSGIVQLNLKGCKNI---ECLPNFIS 185 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l----~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~---~~lp~~~~ 185 (228)
...+++|++|++++|..- ..++..+..+++|+.|++++|.+..+|..+..+++|+.|+++++... ...+..+.
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 346677888888877432 34556667778888888888877777777777777777777643322 12233455
Q ss_pred CCCCCCEEeccCCCCCcccchhhhcCccccceeccccCC
Q 038390 186 ALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAI 224 (228)
Q Consensus 186 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l 224 (228)
.+++|+.|++++ .....+|..+..+++|++|++++|.+
T Consensus 268 ~~~~L~~L~l~~-~~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 268 FPRKLCRLGLSY-MGPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp CCTTCCEEEETT-CCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred ccccccccCccc-cchhHHHHHHhhcCCCcEEecCCCcC
Confidence 556666666655 33445566666666666666666654
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.71 E-value=6.9e-09 Score=86.84 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=81.0
Q ss_pred cccCCccEEEccCCCCCccc-----chhh-cCCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCCCCCc---
Q 038390 114 IFMKSPKTLILSGCSKLKKF-----PEIV-GNMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCKNIEC--- 179 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~l~~~-----p~~~-~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~--- 179 (228)
..+++|+.|+|++| .++.. ...+ ...++|++|+|++|.++. ++..+...++|++|+|++|. ++.
T Consensus 123 ~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~ 200 (372)
T 3un9_A 123 PVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGL 200 (372)
T ss_dssp HHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHH
T ss_pred HHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHH
Confidence 35678999999998 45332 2222 246789999999998864 55666788899999999975 432
Q ss_pred --cCcccCCCCCCCEEeccCCCCCc-----ccchhhhcCccccceeccccCCC
Q 038390 180 --LPNFISALKFPSTLNFSGLLKFR-----LFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 180 --lp~~~~~l~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
++..+...++|++|+|++| .++ .++..+...++|++|+|++|.|+
T Consensus 201 ~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 201 ELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3455667789999999995 455 34556667789999999999886
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=1.8e-08 Score=76.05 Aligned_cols=111 Identities=12% Similarity=0.059 Sum_probs=83.2
Q ss_pred ccccCCccEEEccCCCCCc-----ccchhhcCCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCCCCCc---
Q 038390 113 LIFMKSPKTLILSGCSKLK-----KFPEIVGNMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCKNIEC--- 179 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~-----~~p~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~--- 179 (228)
+...++|++|+|++|..++ .+.+.+...++|++|+|++|.+.. +...+...++|++|+|++|. ++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence 5667889999999883343 245667778899999999998863 45556667889999999875 443
Q ss_pred --cCcccCCCCCCCEEec--cCCCCCcc-----cchhhhcCccccceeccccCCC
Q 038390 180 --LPNFISALKFPSTLNF--SGLLKFRL-----FPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 180 --lp~~~~~l~~L~~L~l--~~c~~l~~-----lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
+...+...++|++|++ ++ +.++. +.+.+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556677788999999 66 55653 5566677789999999999763
No 145
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=98.66 E-value=2.2e-09 Score=80.48 Aligned_cols=42 Identities=31% Similarity=0.357 Sum_probs=39.8
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHHh
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVEW 42 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c 42 (228)
|+.|.+++.+||++||.+|+|+|++|+.|.||..|+..++++
T Consensus 77 G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~ 118 (178)
T 2j67_A 77 GKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHN 118 (178)
T ss_dssp TSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC
T ss_pred CccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHH
Confidence 788999999999999999999999999999999999998864
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.65 E-value=5.3e-09 Score=92.09 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=79.6
Q ss_pred ccCCccEEEccCCCCCcc--cchhhcCCCCcceEEccCCcccc-----cchhcCCCCCCcEEeccCCC-CC--CccCccc
Q 038390 115 FMKSPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDGTDIKG-----LLLSIVLLSGIVQLNLKGCK-NI--ECLPNFI 184 (228)
Q Consensus 115 ~l~~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~-~~--~~lp~~~ 184 (228)
.+++|++|++++|..++. ++.....+++|++|++++|.++. ++.....+++|+.|++++|. .+ ..++..+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 678999999998865554 56666688999999999987654 33334567899999999875 11 1122223
Q ss_pred CCCCCCCEEeccCCCCCcccchhhhcCccccceecccc
Q 038390 185 SALKFPSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGT 222 (228)
Q Consensus 185 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n 222 (228)
.++++|++|++++|..++.+|..++.+++|+.|+++.+
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 45789999999998777778888888888888886655
No 147
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=98.65 E-value=6.3e-09 Score=76.58 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=40.4
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCc-chhccHHHHHHHHHhc
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCA-SSTWCLDELVKIVEWK 43 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~-~s~wcl~el~~i~~c~ 43 (228)
|+.|.+++.+||++||..|+|+|++|+ .|.||..|+..+++|.
T Consensus 54 G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~ 97 (159)
T 1t3g_A 54 TGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNM 97 (159)
T ss_dssp CTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHH
T ss_pred ccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHH
Confidence 788999999999999999999999996 9999999999999873
No 148
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=98.61 E-value=5.8e-09 Score=76.88 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=39.5
Q ss_pred CCCCChhHHHHHh-hcceEEEEecCCCcchhccHHHHHHHHHh
Q 038390 1 GISISPAPSKVIE-ESRISVIVFLRNCASSTWCLDELVKIVEW 42 (228)
Q Consensus 1 g~~~~~~~~~~i~-~s~~~~~~~s~~y~~s~wcl~el~~i~~c 42 (228)
|+.|.+++.+||+ .||.+|+|+|++|+.|.||..|+..+++|
T Consensus 57 G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~ 99 (160)
T 2js7_A 57 GTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSL 99 (160)
T ss_dssp SCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHH
Confidence 7889999999999 69999999999999999999999999974
No 149
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=98.56 E-value=7.7e-09 Score=75.33 Aligned_cols=41 Identities=29% Similarity=0.203 Sum_probs=38.8
Q ss_pred CCCCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHHH
Q 038390 1 GISISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIVE 41 (228)
Q Consensus 1 g~~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~ 41 (228)
|+.|.+++.+||++||++|+|+|++|+.|.||..|+..+++
T Consensus 47 G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~ 87 (149)
T 1fyx_A 47 GKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHF 87 (149)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCC
T ss_pred chhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHH
Confidence 78899999999999999999999999999999999998874
No 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.52 E-value=1.3e-07 Score=83.18 Aligned_cols=84 Identities=8% Similarity=0.026 Sum_probs=48.2
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcc----cccchhcCCCCCCcEEeccCCCCCCccCcccCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDI----KGLLLSIVLLSGIVQLNLKGCKNIECLPNFISALK 188 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i----~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~ 188 (228)
+.++++|++|++++| .+..+|..++.+++|++|+++.... ...+..++.+++|+.|++.++ ....+|..+..++
T Consensus 216 ~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~ 293 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA 293 (592)
T ss_dssp HHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG
T ss_pred HhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcC
Confidence 557889999999998 5666788888888888888864311 122233344444444444442 2233444444444
Q ss_pred CCCEEeccCC
Q 038390 189 FPSTLNFSGL 198 (228)
Q Consensus 189 ~L~~L~l~~c 198 (228)
+|++|++++|
T Consensus 294 ~L~~L~Ls~~ 303 (592)
T 3ogk_B 294 QIRKLDLLYA 303 (592)
T ss_dssp GCCEEEETTC
T ss_pred CCcEEecCCC
Confidence 4444444443
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=4.4e-08 Score=81.91 Aligned_cols=107 Identities=12% Similarity=0.055 Sum_probs=80.5
Q ss_pred CCccEEEccCCCCCcc--cchhhcCCCCcceEEccCCccccc-----chhc-CCCCCCcEEeccCCCCCCc-----cCcc
Q 038390 117 KSPKTLILSGCSKLKK--FPEIVGNMKFLRQLLLDGTDIKGL-----LLSI-VLLSGIVQLNLKGCKNIEC-----LPNF 183 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~--~p~~~~~l~~L~~L~l~~~~i~~l-----p~~~-~~l~~L~~L~l~~~~~~~~-----lp~~ 183 (228)
++|++|+|++|. ++. +......+++|++|+|++|.++.. ...+ ...++|+.|+|++|. ++. ++..
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 689999999994 432 233344567899999999988643 2223 356889999999985 433 4555
Q ss_pred cCCCCCCCEEeccCCCCCcc-----cchhhhcCccccceeccccCCCC
Q 038390 184 ISALKFPSTLNFSGLLKFRL-----FPEIMGCIEHLLALRLLGTAIRG 226 (228)
Q Consensus 184 ~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~n~l~~ 226 (228)
+..+++|++|+|++| .++. +++.+...++|+.|+|++|.|+.
T Consensus 179 L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 179 LAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 678899999999995 4553 46677788899999999999873
No 152
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.43 E-value=1.3e-07 Score=83.08 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=79.8
Q ss_pred cccCCccEEEccCCCCCcccchhhc-CCCCcceEEccCC-cccc--cchhcCCCCCCcEEeccCCCCCCc-----cCccc
Q 038390 114 IFMKSPKTLILSGCSKLKKFPEIVG-NMKFLRQLLLDGT-DIKG--LLLSIVLLSGIVQLNLKGCKNIEC-----LPNFI 184 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~l~~~p~~~~-~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~~ 184 (228)
..+++|++|++++|......+..+. .+++|++|++++| .++. ++..+.++++|++|++++|. ++. ++...
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 4678999999999964444455554 6899999999998 6654 56556689999999999986 222 33334
Q ss_pred CCCCCCCEEeccCCC-CCc--ccchhhhcCccccceecccc
Q 038390 185 SALKFPSTLNFSGLL-KFR--LFPEIMGCIEHLLALRLLGT 222 (228)
Q Consensus 185 ~~l~~L~~L~l~~c~-~l~--~lp~~~~~l~~L~~L~l~~n 222 (228)
..+++|+.|++++|. .+. .++..+..+++|+.|++++|
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 478899999999975 222 34444566899999999988
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.40 E-value=2.1e-07 Score=69.38 Aligned_cols=87 Identities=10% Similarity=0.097 Sum_probs=63.2
Q ss_pred CCccEEEccCCCCCcc-cchhhcCCCCcceEEccCC-ccccc-chhcCCC----CCCcEEeccCCCCCCcc-CcccCCCC
Q 038390 117 KSPKTLILSGCSKLKK-FPEIVGNMKFLRQLLLDGT-DIKGL-LLSIVLL----SGIVQLNLKGCKNIECL-PNFISALK 188 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~-~p~~~~~l~~L~~L~l~~~-~i~~l-p~~~~~l----~~L~~L~l~~~~~~~~l-p~~~~~l~ 188 (228)
..|+.||+++|. +.. --..+..+++|++|+|++| .++.- -..+..+ ++|+.|++++|..+++- -..+.+++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 368999999996 433 2344678999999999998 46532 1234443 47999999999877652 12466789
Q ss_pred CCCEEeccCCCCCccc
Q 038390 189 FPSTLNFSGLLKFRLF 204 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~l 204 (228)
+|++|++++|..++..
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 9999999999888754
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=3.2e-07 Score=73.11 Aligned_cols=79 Identities=22% Similarity=0.169 Sum_probs=47.7
Q ss_pred cCCCCcceEEccCCcccccc---hhcCCCCCCcEEeccCCCCCCccCcccCCCC--CCCEEeccCCCCCcccc-------
Q 038390 138 GNMKFLRQLLLDGTDIKGLL---LSIVLLSGIVQLNLKGCKNIECLPNFISALK--FPSTLNFSGLLKFRLFP------- 205 (228)
Q Consensus 138 ~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~--~L~~L~l~~c~~l~~lp------- 205 (228)
..+++|+.|+|++|.+..++ ..+..+++|+.|+|++|. +..+ ..+..++ +|++|+|++|.....+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45667777777777666543 445567777777777754 4443 2233333 77777777744333444
Q ss_pred hhhhcCcccccee
Q 038390 206 EIMGCIEHLLALR 218 (228)
Q Consensus 206 ~~~~~l~~L~~L~ 218 (228)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2356677777765
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=3.8e-07 Score=67.96 Aligned_cols=85 Identities=14% Similarity=0.030 Sum_probs=62.6
Q ss_pred CCcceEEccCCccccc-chhcCCCCCCcEEeccCCCCCCcc-CcccCCC----CCCCEEeccCCCCCcccc-hhhhcCcc
Q 038390 141 KFLRQLLLDGTDIKGL-LLSIVLLSGIVQLNLKGCKNIECL-PNFISAL----KFPSTLNFSGLLKFRLFP-EIMGCIEH 213 (228)
Q Consensus 141 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l----~~L~~L~l~~c~~l~~lp-~~~~~l~~ 213 (228)
-.|++||+++|.++.. -..+..+++|+.|+|++|..+++- -..+..+ ++|++|+|++|..++.-- ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3689999999987643 234678899999999999876642 1234443 479999999998887422 45677899
Q ss_pred ccceeccccC-CC
Q 038390 214 LLALRLLGTA-IR 225 (228)
Q Consensus 214 L~~L~l~~n~-l~ 225 (228)
|+.|++++|. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999985 44
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=1.5e-06 Score=71.21 Aligned_cols=99 Identities=13% Similarity=0.124 Sum_probs=84.5
Q ss_pred cCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccch-hcCCCCCCc-EEeccCCCCCCccC-cccCCCCCCC
Q 038390 116 MKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIV-QLNLKGCKNIECLP-NFISALKFPS 191 (228)
Q Consensus 116 l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~-~L~l~~~~~~~~lp-~~~~~l~~L~ 191 (228)
+++|+.+++++| .+..+|+ .|.++.+|+.+++..| ++.++. .+.++.+|+ .+++.+ .++.++ ..|.+|++|+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 789999999988 5777765 6889999999999998 888865 578999999 999987 467775 5789999999
Q ss_pred EEeccCCCCCcccch-hhhcCccccceec
Q 038390 192 TLNFSGLLKFRLFPE-IMGCIEHLLALRL 219 (228)
Q Consensus 192 ~L~l~~c~~l~~lp~-~~~~l~~L~~L~l 219 (228)
.+++++ +.++.+++ .+.++++|+.++.
T Consensus 301 ~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 999988 77888885 7899999998864
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=3.2e-07 Score=73.08 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=59.1
Q ss_pred cccCCccEEEccCCCCCc---ccchhhcCCCCcceEEccCCcccccchhcCCCC--CCcEEeccCCCCCCccCc------
Q 038390 114 IFMKSPKTLILSGCSKLK---KFPEIVGNMKFLRQLLLDGTDIKGLLLSIVLLS--GIVQLNLKGCKNIECLPN------ 182 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~l~---~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~~~~~lp~------ 182 (228)
.++++|++|+|++| .+. .+|..++.+++|+.|+|++|.++.+. .+..+. +|+.|+|.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46889999999998 444 44567778999999999999888763 344444 899999999875555552
Q ss_pred -ccCCCCCCCEEe
Q 038390 183 -FISALKFPSTLN 194 (228)
Q Consensus 183 -~~~~l~~L~~L~ 194 (228)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 256788888875
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=8.3e-07 Score=73.90 Aligned_cols=63 Identities=11% Similarity=0.102 Sum_probs=33.6
Q ss_pred CCCCCcEEeccCCCCCCccCcc---cCCCCCCCEEeccCCCCCcc-----cchhhhcCccccceeccccCCC
Q 038390 162 LLSGIVQLNLKGCKNIECLPNF---ISALKFPSTLNFSGLLKFRL-----FPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 162 ~l~~L~~L~l~~~~~~~~lp~~---~~~l~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
.+++|+.|++.+|......+.. ...+++|++|+|+. +.++. ++..+..+++|+.|++++|.|+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 3556666666655432111111 12456677777765 34443 3444455667777777777654
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=3.6e-06 Score=70.01 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=70.4
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCccccc-chhc--CCCCCCcEEeccCCC-------CCCccCc
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGL-LLSI--VLLSGIVQLNLKGCK-------NIECLPN 182 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~l-p~~~--~~l~~L~~L~l~~~~-------~~~~lp~ 182 (228)
+..+++|+.|++++|..+ .++. + .+++|++|++..+.+..- ...+ ..+++|+.|+|+.+. .+..+..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 456788888888887433 3343 3 377888888887766421 1222 368899999885321 1222222
Q ss_pred cc--CCCCCCCEEeccCCCCCcccchhh---hcCccccceeccccCCC
Q 038390 183 FI--SALKFPSTLNFSGLLKFRLFPEIM---GCIEHLLALRLLGTAIR 225 (228)
Q Consensus 183 ~~--~~l~~L~~L~l~~c~~l~~lp~~~---~~l~~L~~L~l~~n~l~ 225 (228)
.+ ..+++|++|++++|......+..+ ..+++|++|+|+.|.|.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 22 357899999999865433333333 35789999999999875
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.98 E-value=4.8e-06 Score=62.53 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=71.4
Q ss_pred cchhhcCCCCcceEEccCC-ccc-----ccchhcCCCCCCcEEeccCCCCCCc-----cCcccCCCCCCCEEeccCCCCC
Q 038390 133 FPEIVGNMKFLRQLLLDGT-DIK-----GLLLSIVLLSGIVQLNLKGCKNIEC-----LPNFISALKFPSTLNFSGLLKF 201 (228)
Q Consensus 133 ~p~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~l 201 (228)
+...+...+.|++|+|++| .+. .+...+...++|++|+|++|. ++. +...+...++|++|+|++| .+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 4556777899999999999 886 356677788999999999975 432 3444556688999999994 55
Q ss_pred cc-----cchhhhcCccccceec--cccCCC
Q 038390 202 RL-----FPEIMGCIEHLLALRL--LGTAIR 225 (228)
Q Consensus 202 ~~-----lp~~~~~l~~L~~L~l--~~n~l~ 225 (228)
+. +.+.+...++|++|+| ++|.|.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 53 5677788889999999 889886
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.87 E-value=8.9e-05 Score=62.43 Aligned_cols=104 Identities=9% Similarity=0.106 Sum_probs=68.2
Q ss_pred CCccEEEccCCCCCccc-chhhcCCCCcceEEccCCccc-----ccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCC
Q 038390 117 KSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIK-----GLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALK 188 (228)
Q Consensus 117 ~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~-----~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~ 188 (228)
.+|+.+.+.. .+..+ +..|.++++|+.+++.++.+. .++ ..+.++++|+.+++.+ .+..++. .|.+|+
T Consensus 248 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 248 SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNR 323 (401)
T ss_dssp CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCC
T ss_pred CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCC
Confidence 4455555532 24444 345677778888887776554 443 3567777888888874 3566644 567788
Q ss_pred CCCEEeccCCCCCcccc-hhhhcCccccceeccccCCCCC
Q 038390 189 FPSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGTAIRGL 227 (228)
Q Consensus 189 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n~l~~l 227 (228)
+|+.+.+.. .++.++ ..+.++ +|+.+++.+|.+..+
T Consensus 324 ~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 324 KVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp SCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred CccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 888888854 366665 457777 888888888876544
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.60 E-value=0.00026 Score=59.60 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=52.3
Q ss_pred ccccCCccEEEccCCCCCcccchhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCC-----------------
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGC----------------- 174 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~----------------- 174 (228)
+.++++|+.+++++| .+..+|.......+|+.+.+..+ +..++. .+.++++|+.+++..+
T Consensus 176 F~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i 253 (401)
T 4fdw_A 176 FYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTV 253 (401)
T ss_dssp TTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEE
T ss_pred hhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEE
Confidence 556666777777655 45555443333455555555432 333432 2344455555555431
Q ss_pred ---CCCCccC-cccCCCCCCCEEeccCCCCCc-----ccc-hhhhcCccccceecc
Q 038390 175 ---KNIECLP-NFISALKFPSTLNFSGLLKFR-----LFP-EIMGCIEHLLALRLL 220 (228)
Q Consensus 175 ---~~~~~lp-~~~~~l~~L~~L~l~~c~~l~-----~lp-~~~~~l~~L~~L~l~ 220 (228)
+.++.++ ..|.++++|+.+.+.+ +.+. .++ ..+..+++|+.+++.
T Consensus 254 ~lp~~i~~I~~~aF~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 254 KLPNGVTNIASRAFYYCPELAEVTTYG-STFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp EEETTCCEECTTTTTTCTTCCEEEEES-SCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred EeCCCccEEChhHhhCCCCCCEEEeCC-ccccCCcccEECHHHhhCCccCCeEEeC
Confidence 1123332 2345566666666655 2222 243 345666666666665
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.24 E-value=0.00044 Score=52.30 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=68.0
Q ss_pred cccCCccEEEccCCCCCcc-----cchhhcCCCCcceEEccCCccc-----ccchhcCCCCCCcEEeccCCCCCCc----
Q 038390 114 IFMKSPKTLILSGCSKLKK-----FPEIVGNMKFLRQLLLDGTDIK-----GLLLSIVLLSGIVQLNLKGCKNIEC---- 179 (228)
Q Consensus 114 ~~l~~L~~L~ls~~~~l~~-----~p~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~---- 179 (228)
..-+.|+.|+|+++..++. +-+.+..-+.|+.|+|++|.+. .+...+..=+.|+.|+|++|. ++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH
Confidence 3445678888887534432 4556666778888888888776 234445555678888888764 332
Q ss_pred -cCcccCCCCCCCEEeccCCC--CCc-----ccchhhhcCccccceeccccC
Q 038390 180 -LPNFISALKFPSTLNFSGLL--KFR-----LFPEIMGCIEHLLALRLLGTA 223 (228)
Q Consensus 180 -lp~~~~~l~~L~~L~l~~c~--~l~-----~lp~~~~~l~~L~~L~l~~n~ 223 (228)
+-..+..=+.|+.|+|++|. .++ .+.+.+..=++|+.|+++.|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 22334444668888887532 333 244455555778888887664
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.88 E-value=0.0071 Score=50.38 Aligned_cols=103 Identities=8% Similarity=0.071 Sum_probs=57.2
Q ss_pred ccccCCccEEEccCCCCCccc-chhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKF-PEIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~-p~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+..|+.+.+... +..+ ...+.++..|+.+.+. +.+..++. .+.++.+|+.+.+.. .++.+.. .|.+|++
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred eeecccccEEecccc--cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 445556666666432 2222 2345556666666664 33445543 355666777777654 2445533 4566677
Q ss_pred CCEEeccCCCCCcccc-hhhhcCccccceecccc
Q 038390 190 PSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGT 222 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n 222 (228)
|+.+.+.. .++.+. ..+.++++|+.+++.++
T Consensus 336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 77776643 355555 35666667776666654
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.69 E-value=0.0031 Score=44.25 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=40.0
Q ss_pred ceEEccCCccc--ccchhcCCCCCCcEEeccCCCCCCccCc-ccCCCCCCCEEeccCCC
Q 038390 144 RQLLLDGTDIK--GLLLSIVLLSGIVQLNLKGCKNIECLPN-FISALKFPSTLNFSGLL 199 (228)
Q Consensus 144 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~l~~c~ 199 (228)
..++.+++.++ .+|..+. .+|+.|+|++| .++.+|. .|..+++|+.|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 36788888888 8886433 47899999986 4777765 46778899999998843
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.69 E-value=0.0058 Score=50.91 Aligned_cols=105 Identities=12% Similarity=0.212 Sum_probs=71.8
Q ss_pred ccccCCccEEEccCCCCCcccch-hhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFPE-IVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+.+++.|+.+.+.. .+..+++ .|.++.+|+.+++..+ ++.+.. .+.++.+|+.+.+..+ ++.+.. .|.+|++
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTA 358 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTT
T ss_pred cccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCC
Confidence 67889999999974 4667754 6788999999999864 666644 5788999999999753 666754 6889999
Q ss_pred CCEEeccCCCCCcccchhhhcCccccceeccccCCC
Q 038390 190 PSTLNFSGLLKFRLFPEIMGCIEHLLALRLLGTAIR 225 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~n~l~ 225 (228)
|+.+++.++. ..+ ..+..+.+|+.+.+..+.+.
T Consensus 359 L~~i~~~~~~--~~~-~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 359 LNNIEYSGSR--SQW-NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp CCEEEESSCH--HHH-HTCBCCCCC-----------
T ss_pred CCEEEECCce--eeh-hhhhccCCCCEEEeCCCCEE
Confidence 9999998732 222 45667788999988877653
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.41 E-value=0.025 Score=46.62 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=58.5
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+..|+.+.+..+ +..+. ..+.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.++ .++.++. .|.++.+
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc-ccceehhhhhcCCCC
Confidence 445556666666543 44442 34555666666666543 444433 3566677777777653 3455543 4667777
Q ss_pred CCEEeccCCCCCcccch-hhhcCccccceecc
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIEHLLALRLL 220 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~ 220 (228)
|+.+.+.. .++.+++ .+.++.+|+.+.+.
T Consensus 312 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred CCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 77777753 3556653 46666777776664
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.38 E-value=0.0046 Score=43.34 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=35.3
Q ss_pred EEEccCCCCCc--ccchhhcCCCCcceEEccCCcccccchh-cCCCCCCcEEeccCCC
Q 038390 121 TLILSGCSKLK--KFPEIVGNMKFLRQLLLDGTDIKGLLLS-IVLLSGIVQLNLKGCK 175 (228)
Q Consensus 121 ~L~ls~~~~l~--~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 175 (228)
.++.+++ .++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5566655 455 6665332 3678888888888887654 5667788888888765
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.31 E-value=0.011 Score=49.11 Aligned_cols=101 Identities=15% Similarity=0.097 Sum_probs=57.1
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+..++.+..... .++ ..+..+.+|+.+.+..+ ++.++. .+.++++|+.+++.. .++.+.. .|.+|++
T Consensus 272 F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTS 344 (394)
T ss_dssp TTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred cccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence 444555555555432 122 23556667777766543 444533 456667777777754 2455533 4666777
Q ss_pred CCEEeccCCCCCcccc-hhhhcCccccceecccc
Q 038390 190 PSTLNFSGLLKFRLFP-EIMGCIEHLLALRLLGT 222 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~n 222 (228)
|+.+.+.. .++.++ ..+.++.+|+.+++..+
T Consensus 345 L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 345 LSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 77777654 255555 35666677777766543
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.20 E-value=0.02 Score=47.26 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=70.6
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccch-hcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLLL-SIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+.++.++.++. .+.++.+|+.+.+.. .++.+.. .|.+|++
T Consensus 259 F~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred cceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCC
Confidence 66788899999875 366665 467889999999999998988864 578899999999975 3667754 5788999
Q ss_pred CCEEeccCCCCCcccch-hhhcCc
Q 038390 190 PSTLNFSGLLKFRLFPE-IMGCIE 212 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~-~~~~l~ 212 (228)
|+.+.+.. .++.+.+ .+.++.
T Consensus 335 L~~i~ip~--~v~~I~~~aF~~c~ 356 (379)
T 4h09_A 335 LSTISYPK--SITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCCT--TCCEECTTTTTTSS
T ss_pred CCEEEECC--ccCEEchhHhhCCC
Confidence 99888854 3555543 344443
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.98 E-value=0.033 Score=46.23 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=54.4
Q ss_pred ccccCCccEEEccCCCCCcccc-hhhcCCCCcceEEccCCcccccc-hhcCCCCCCcEEeccCCCCCCccCc-ccCCCCC
Q 038390 113 LIFMKSPKTLILSGCSKLKKFP-EIVGNMKFLRQLLLDGTDIKGLL-LSIVLLSGIVQLNLKGCKNIECLPN-FISALKF 189 (228)
Q Consensus 113 ~~~l~~L~~L~ls~~~~l~~~p-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~ 189 (228)
+..+.+|+.+.+..+ +..++ ..+.++.+|+.+++..+ ++.++ ..+.++++|+.+.+..+ ++.+.. .|.+|++
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTT
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCC
Confidence 455666666666543 44443 34566666777766543 55553 24566667777766542 445533 4566667
Q ss_pred CCEEeccCCCCCcccchhhhcCccccc
Q 038390 190 PSTLNFSGLLKFRLFPEIMGCIEHLLA 216 (228)
Q Consensus 190 L~~L~l~~c~~l~~lp~~~~~l~~L~~ 216 (228)
|+.+++.. .+..+...+.++++|+.
T Consensus 368 L~~i~lp~--~~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 368 LKKVELPK--RLEQYRYDFEDTTKFKW 392 (394)
T ss_dssp CCEEEEEG--GGGGGGGGBCTTCEEEE
T ss_pred CCEEEECC--CCEEhhheecCCCCCcE
Confidence 77766654 23444444555555554
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.28 E-value=0.023 Score=42.74 Aligned_cols=87 Identities=10% Similarity=0.078 Sum_probs=61.4
Q ss_pred chhhcCCCCcceEEccCC-ccc-----ccchhcCCCCCCcEEeccCCCCCCc-----cCcccCCCCCCCEEeccCCCCCc
Q 038390 134 PEIVGNMKFLRQLLLDGT-DIK-----GLLLSIVLLSGIVQLNLKGCKNIEC-----LPNFISALKFPSTLNFSGLLKFR 202 (228)
Q Consensus 134 p~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~l~ 202 (228)
...+..-+.|++|+|+++ .|. .+-..+..-+.|+.|+|++|. +++ +...+..=+.|+.|+|++ +.++
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig 111 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-NFLT 111 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-SBCC
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-CcCC
Confidence 334455678999999985 775 355667777899999999975 332 223333447899999999 5554
Q ss_pred -----ccchhhhcCccccceecccc
Q 038390 203 -----LFPEIMGCIEHLLALRLLGT 222 (228)
Q Consensus 203 -----~lp~~~~~l~~L~~L~l~~n 222 (228)
.+-+.+..-+.|+.|+|++|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCC
Confidence 24455666678999999865
No 173
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=87.19 E-value=0.41 Score=35.22 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=38.7
Q ss_pred CCChhHHHHHhhcceEEEEecCCCcchhccHHHHHHHH-HhcC
Q 038390 3 SISPAPSKVIEESRISVIVFLRNCASSTWCLDELVKIV-EWKN 44 (228)
Q Consensus 3 ~~~~~~~~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~-~c~~ 44 (228)
.|.+.|.++|..|+..|++.+++...+.|=.+|+..-. ++..
T Consensus 68 tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~ 110 (189)
T 3hyn_A 68 TLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTKGL 110 (189)
T ss_dssp THHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999 8777
No 174
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=69.78 E-value=2.4 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.301 Sum_probs=19.2
Q ss_pred hcceEEEEecCCCcchhccHHHHHHHHH
Q 038390 14 ESRISVIVFLRNCASSTWCLDELVKIVE 41 (228)
Q Consensus 14 ~s~~~~~~~s~~y~~s~wcl~el~~i~~ 41 (228)
++.+++||||+.---..||-..+..|++
T Consensus 39 da~Valiifs~~gk~~~f~s~~~~~il~ 66 (90)
T 3p57_A 39 DCEIALIIFNSSNKLFQYASTDMDKVLL 66 (90)
T ss_dssp TCEEEEEEECTTCCEEEEESSCHHHHHH
T ss_pred CCceEEEEECCCCCEEEeCCCCHHHHHH
Confidence 8899999999885555565334444444
No 175
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=49.82 E-value=9 Score=23.79 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=18.6
Q ss_pred hcceEEEEecCCCcchhccHHHHHHHH
Q 038390 14 ESRISVIVFLRNCASSTWCLDELVKIV 40 (228)
Q Consensus 14 ~s~~~~~~~s~~y~~s~wcl~el~~i~ 40 (228)
++.+++||||+..--..||-..+.+|+
T Consensus 39 daeV~livfs~~gk~~~~~s~~~~~il 65 (77)
T 1egw_A 39 DCEIALIIFNSSNKLFQYASTDMDKVL 65 (77)
T ss_dssp TCEEEEEEECTTCCEEEEESSCHHHHH
T ss_pred CCeEEEEEECCCCCEeeCCCCCHHHHH
Confidence 899999999988655566533333444
No 176
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=41.52 E-value=11 Score=25.23 Aligned_cols=35 Identities=6% Similarity=-0.116 Sum_probs=28.5
Q ss_pred HHHhhcceEEEEecCCCcchhccHHHHHHHHHhcC
Q 038390 10 KVIEESRISVIVFLRNCASSTWCLDELVKIVEWKN 44 (228)
Q Consensus 10 ~~i~~s~~~~~~~s~~y~~s~wcl~el~~i~~c~~ 44 (228)
++|+.+...||..++.-+.+.||-.|+..-.+-.+
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gk 68 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSK 68 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCC
Confidence 45778888888888888999999999977666555
No 177
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=40.89 E-value=7.8 Score=18.20 Aligned_cols=9 Identities=56% Similarity=1.236 Sum_probs=7.4
Q ss_pred CCCcchhcc
Q 038390 24 RNCASSTWC 32 (228)
Q Consensus 24 ~~y~~s~wc 32 (228)
+|-.+|+||
T Consensus 7 pngCs~rWC 15 (26)
T 1q2j_A 7 RRGCSSRWC 15 (26)
T ss_dssp SSCCCSSSS
T ss_pred CCcccchhh
Confidence 567889998
No 178
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=39.69 E-value=12 Score=24.47 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=11.6
Q ss_pred hhHHHHHhhcceEEEEecCCCc
Q 038390 6 PAPSKVIEESRISVIVFLRNCA 27 (228)
Q Consensus 6 ~~~~~~i~~s~~~~~~~s~~y~ 27 (228)
++.+.++.+...++|+||..|-
T Consensus 42 ~~emg~lsG~~rsLvvFSsgYr 63 (102)
T 2pp6_A 42 LAELGPVEGNGKNVVVFSGNVI 63 (102)
T ss_dssp TC--------CEEEEECCSSCC
T ss_pred HHHhCCccCCceEEEEecCCcc
Confidence 4567789999999999998774
No 179
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=25.63 E-value=27 Score=22.84 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=15.1
Q ss_pred hcceEEEEecCCCcchhcc
Q 038390 14 ESRISVIVFLRNCASSTWC 32 (228)
Q Consensus 14 ~s~~~~~~~s~~y~~s~wc 32 (228)
++.+++||||+.-.-..||
T Consensus 55 da~Valivfs~~gk~~~f~ 73 (100)
T 1mnm_A 55 GTQVLLLVVSETGLVYTFS 73 (100)
T ss_dssp TCEEEEEEECTTCCEEEEE
T ss_pred CCcEEEEEecCCCCcceec
Confidence 8899999999875555565
No 180
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.87 E-value=68 Score=20.58 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=31.1
Q ss_pred cccccch-hcCCCCCCcEEeccCCCCCCccC-cccCCCCCCCEEeccC
Q 038390 152 DIKGLLL-SIVLLSGIVQLNLKGCKNIECLP-NFISALKFPSTLNFSG 197 (228)
Q Consensus 152 ~i~~lp~-~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~l~~ 197 (228)
.++.+.. .+.++++|+.+.+... ++.+- ..|.+|.+|+.+.+.+
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 3444533 4678888999888763 55553 3578899999998876
No 181
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=20.95 E-value=69 Score=20.51 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=15.3
Q ss_pred hcceEEEEecCCCcchhcc
Q 038390 14 ESRISVIVFLRNCASSTWC 32 (228)
Q Consensus 14 ~s~~~~~~~s~~y~~s~wc 32 (228)
++.+++||||+.-.--.|+
T Consensus 49 da~V~livfs~~gk~~~f~ 67 (92)
T 1hbx_A 49 GTQVLLLVASETGHVYTFA 67 (92)
T ss_dssp CCEEEEEEECTTSCEEEEE
T ss_pred CCceEEEEECCCCCEEEec
Confidence 8999999999886555565
No 182
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=20.31 E-value=75 Score=20.82 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=15.2
Q ss_pred hcceEEEEecCCCcchhcc
Q 038390 14 ESRISVIVFLRNCASSTWC 32 (228)
Q Consensus 14 ~s~~~~~~~s~~y~~s~wc 32 (228)
++.+++||||+.-.--.|+
T Consensus 48 da~Valivfs~~gk~~~f~ 66 (103)
T 1k6o_B 48 GTQVLLLVASETGHVYTFA 66 (103)
T ss_dssp TCEEEEEEECSSSCEEEEE
T ss_pred CCceEEEEEeCCCCeeeec
Confidence 8999999999885555565
Done!