BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038391
(186 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255581527|ref|XP_002531569.1| ftsj, putative [Ricinus communis]
gi|223528799|gb|EEF30805.1| ftsj, putative [Ricinus communis]
Length = 228
Score = 298 bits (763), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 152/192 (79%), Positives = 170/192 (88%), Gaps = 6/192 (3%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG GAPDFFYREAQRLGYVARSAFKLLQIQKQ+KLI PGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGAPDFFYREAQRLGYVARSAFKLLQIQKQHKLITPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL NGGSVVGID+KKVKVP+ +CDARV+TV ADV+NLP +QVRALS +QKGFSV+LSD
Sbjct: 61 LGPLKNGGSVVGIDLKKVKVPNPYCDARVKTVCADVMNLPRDQVRALSLQQKGFSVVLSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASP--VNNSDSST----DSGVLKPGGH 174
MCP VSGITTKDAALS+ELGM+A+D+A+G AA A P N +D ST D+GVL+ GGH
Sbjct: 121 MCPPVSGITTKDAALSMELGMQALDIAIGGAASAHPDDENQNDDSTSGENDNGVLQAGGH 180
Query: 175 LVIKLLESQDAQ 186
LVIKLLES+D Q
Sbjct: 181 LVIKLLESEDIQ 192
>gi|449450030|ref|XP_004142767.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like
[Cucumis sativus]
gi|449528435|ref|XP_004171210.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like
[Cucumis sativus]
Length = 238
Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/197 (74%), Positives = 169/197 (85%), Gaps = 11/197 (5%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG GAPDFFYREAQRLGYVARSAFKLLQIQ Q+KLI GSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGAPDFFYREAQRLGYVARSAFKLLQIQNQFKLITSGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGP NGGSV+GID+KKVKVP +HCD+RVQTVSADV+NLP +++++LSPK+KGFSVILSD
Sbjct: 61 LGPPRNGGSVLGIDIKKVKVPHMHCDSRVQTVSADVMNLPKSKLKSLSPKEKGFSVILSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALA----------SPVNNSDSSTD-SGVL 169
MCP VSGITT+DAALSVELGM+AV+LALG AAL V++S S++D GVL
Sbjct: 121 MCPLVSGITTRDAALSVELGMQAVNLALGEAALGVGDVIHGKDKDSVDDSTSASDCDGVL 180
Query: 170 KPGGHLVIKLLESQDAQ 186
+ GGHLV+KLLES+D Q
Sbjct: 181 RQGGHLVLKLLESEDTQ 197
>gi|224112735|ref|XP_002316277.1| predicted protein [Populus trichocarpa]
gi|222865317|gb|EEF02448.1| predicted protein [Populus trichocarpa]
Length = 232
Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/193 (75%), Positives = 167/193 (86%), Gaps = 9/193 (4%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G PDFFYREAQRLGYVARSAFKLLQIQK++KLI PGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGTPDFFYREAQRLGYVARSAFKLLQIQKKHKLIAPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL NGG+VVGID+KKVKVP L+CD+RVQTV ADV+ LP NQVRALSP+QKGFSV+LSD
Sbjct: 61 LGPLKNGGAVVGIDLKKVKVPPLYCDSRVQTVCADVMKLPKNQVRALSPRQKGFSVVLSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALAS--------PVNNS-DSSTDSGVLKP 171
MCP VSGITT+DAALS ELGM+A+ LA+G AA A +N+S ++ D+G+L+P
Sbjct: 121 MCPLVSGITTRDAALSAELGMQALGLAVGRAATAHLDEIRTDRLLNDSVCTADDNGILQP 180
Query: 172 GGHLVIKLLESQD 184
GGHLVIKLLES+D
Sbjct: 181 GGHLVIKLLESED 193
>gi|225449466|ref|XP_002283276.1| PREDICTED: ribosomal RNA large subunit methyltransferase E [Vitis
vinifera]
gi|296086215|emb|CBI31656.3| unnamed protein product [Vitis vinifera]
Length = 233
Score = 287 bits (734), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 145/196 (73%), Positives = 163/196 (83%), Gaps = 10/196 (5%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G PDFFYREAQRLGY ARSAFKLLQ+QKQYKLIKPGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGTPDFFYREAQRLGYAARSAFKLLQMQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL NGG VVGID+KKVKVPS+HCD+RV+TV ADV+ LP +++RA SP++KGFSVILSD
Sbjct: 61 LGPLKNGGVVVGIDLKKVKVPSMHCDSRVKTVCADVMKLPKDEIRAFSPQRKGFSVILSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALA------SPVNNSDSST----DSGVLK 170
MCP VSGITTKDA LS ELGM+A+ LA+ ALA + D ST D G+L+
Sbjct: 121 MCPLVSGITTKDAVLSAELGMQALHLAVRGPALAPSGDEIQKGEHHDDSTSGPDDDGILQ 180
Query: 171 PGGHLVIKLLESQDAQ 186
PGGHLVIKLLES+DAQ
Sbjct: 181 PGGHLVIKLLESEDAQ 196
>gi|15240727|ref|NP_196887.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
gi|5821280|dbj|BAA83750.1| FtsJ [Arabidopsis thaliana]
gi|10177649|dbj|BAB11111.1| FtsJ [Arabidopsis thaliana]
gi|332004564|gb|AED91947.1| FtsJ-like methyltransferase family protein [Arabidopsis thaliana]
Length = 224
Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 143/189 (75%), Positives = 163/189 (86%), Gaps = 4/189 (2%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGVPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL +GG VVG+D+KKVKVP CD+RVQT++ADV+N P ++R LSP+Q GFSVILSD
Sbjct: 61 LGPLRSGGIVVGMDIKKVKVPP-QCDSRVQTIAADVLNFPRQKIRELSPQQLGFSVILSD 119
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSD---SSTDSGVLKPGGHLVI 177
MC SVSGITT+DAALS ELGMRA+DLA+G AA++ N+ D + + GVL+ GGHLVI
Sbjct: 120 MCHSVSGITTRDAALSAELGMRALDLAVGQAAISQSPNDDDGGPNESRPGVLRHGGHLVI 179
Query: 178 KLLESQDAQ 186
KLLES+DAQ
Sbjct: 180 KLLESEDAQ 188
>gi|297807411|ref|XP_002871589.1| hypothetical protein ARALYDRAFT_325857 [Arabidopsis lyrata subsp.
lyrata]
gi|297317426|gb|EFH47848.1| hypothetical protein ARALYDRAFT_325857 [Arabidopsis lyrata subsp.
lyrata]
Length = 229
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/194 (74%), Positives = 165/194 (85%), Gaps = 9/194 (4%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS
Sbjct: 1 MSGAGVPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL +GG VVG+D+KKVKVP CD+RVQT++ADV+N P +R LSP+Q GFSVILSD
Sbjct: 61 LGPLKSGGIVVGMDIKKVKVPP-QCDSRVQTIAADVLNFPRQTIRELSPQQLGFSVILSD 119
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALA-SPVNNSD-------SSTDSGVLKPG 172
MC SVSGITT+DAALS ELGMRA+DLA+G AA++ SP +++D + + GVL+ G
Sbjct: 120 MCHSVSGITTRDAALSAELGMRALDLAVGQAAISQSPDDDNDGGDEVPSNESRRGVLRHG 179
Query: 173 GHLVIKLLESQDAQ 186
GHLVIKLLES+DAQ
Sbjct: 180 GHLVIKLLESEDAQ 193
>gi|357492257|ref|XP_003616417.1| Ribosomal RNA large subunit methyltransferase E [Medicago
truncatula]
gi|355517752|gb|AES99375.1| Ribosomal RNA large subunit methyltransferase E [Medicago
truncatula]
Length = 238
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/200 (71%), Positives = 162/200 (81%), Gaps = 17/200 (8%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
M+ GAPDFFY+EAQRLGYVARSAFKL+QIQKQ+KLIKPGSSVLDLGCAPG+WLQVACQS
Sbjct: 1 MAKSGAPDFFYKEAQRLGYVARSAFKLVQIQKQHKLIKPGSSVLDLGCAPGSWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGP NGGSV+GID KKVKVP+ HCD+RV+TV+ADV+ LP Q+R LSPKQKGFSVILSD
Sbjct: 61 LGPFHNGGSVLGIDHKKVKVPTSHCDSRVKTVAADVMTLPKQQLRDLSPKQKGFSVILSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSST--------------DS 166
MCP VSGITTKDAALS ELGMRA+DLA+G A V NSD D
Sbjct: 121 MCPLVSGITTKDAALSFELGMRALDLAVGKVA---SVCNSDGDNLDEVKERCDPSGADDG 177
Query: 167 GVLKPGGHLVIKLLESQDAQ 186
G+L+ GGHLV+KLLES+DA+
Sbjct: 178 GLLRVGGHLVVKLLESEDAK 197
>gi|356551705|ref|XP_003544214.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like
[Glycine max]
Length = 221
Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 135/182 (74%), Positives = 150/182 (82%), Gaps = 6/182 (3%)
Query: 5 GAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL 64
G DFFY+EAQRLGYVARSAFKLLQIQ Q+K+I PGSS+LDLGCAPG WLQVACQSLGP
Sbjct: 5 GTADFFYKEAQRLGYVARSAFKLLQIQNQHKIISPGSSILDLGCAPGGWLQVACQSLGPF 64
Query: 65 DNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
GGSV+G+D KKVKVP LHCD+RVQT+SADV LP +++ALSPK+KGFSVILSDMCP
Sbjct: 65 RGGGSVLGVDTKKVKVPPLHCDSRVQTISADVTTLPHQRLKALSPKEKGFSVILSDMCPL 124
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
VSGITTKDAALS ELGMRA+DLALG P S GVLK GGHLVIKLLES+D
Sbjct: 125 VSGITTKDAALSFELGMRALDLALGSRIHLEP------SDCVGVLKVGGHLVIKLLESED 178
Query: 185 AQ 186
A+
Sbjct: 179 AK 180
>gi|357123721|ref|XP_003563556.1| PREDICTED: ribosomal RNA large subunit methyltransferase E-like
[Brachypodium distachyon]
Length = 234
Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 155/196 (79%), Gaps = 12/196 (6%)
Query: 1 MSG-VGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ 59
MSG G DFFYREAQRLGYVARSAFKL+QIQKQ+KLI PG++VLDLGCAPGAWLQVACQ
Sbjct: 1 MSGATGTADFFYREAQRLGYVARSAFKLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQ 60
Query: 60 SLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
+LGPL+ GG V+G+DVKKVKVPS HCD+RV+TV ADV+ L Q RA+SP+++GFSVILS
Sbjct: 61 NLGPLEKGGVVIGLDVKKVKVPSAHCDSRVRTVCADVMALMKQQARAMSPQERGFSVILS 120
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS------DSST-----DSGV 168
DMCP VSGITTKD A+S ELGMRA+ LA+G L + S SST + GV
Sbjct: 121 DMCPVVSGITTKDEAISCELGMRALSLAIGKIKLKESADYSITMEKFQSSTGPDPDEDGV 180
Query: 169 LKPGGHLVIKLLESQD 184
L+ GG+LVIK LE++D
Sbjct: 181 LRRGGNLVIKFLENED 196
>gi|414873670|tpg|DAA52227.1| TPA: hypothetical protein ZEAMMB73_375323 [Zea mays]
Length = 232
Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 154/195 (78%), Gaps = 12/195 (6%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
M+ G DFFYRE+QRLGYVARSAFKL+Q+QKQ+KLI PG++VLDLGCAPGAWLQVACQ+
Sbjct: 1 MAAGGTADFFYRESQRLGYVARSAFKLIQMQKQHKLIAPGAAVLDLGCAPGAWLQVACQN 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGPL+ GG VVG+DVKKVKVPS HCD+RV+TV ADV+ L Q RA+SP+++GFSVILSD
Sbjct: 61 LGPLEKGGIVVGVDVKKVKVPSAHCDSRVRTVCADVMTLMKRQARAMSPQERGFSVILSD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDS-----------STDSGVL 169
MCP VSGITTKD A+S ELGMRA+ LA+G L N SD+ S + GVL
Sbjct: 121 MCPPVSGITTKDGAISCELGMRALSLAVGKIKLKDS-NYSDTLEKYLSSTEPESDEDGVL 179
Query: 170 KPGGHLVIKLLESQD 184
+ GG+LV+K LE++D
Sbjct: 180 RRGGNLVVKFLENED 194
>gi|115456267|ref|NP_001051734.1| Os03g0822300 [Oryza sativa Japonica Group]
gi|108711810|gb|ABF99605.1| FtsJ-like methyltransferase family protein, putative, expressed
[Oryza sativa Japonica Group]
gi|113550205|dbj|BAF13648.1| Os03g0822300 [Oryza sativa Japonica Group]
gi|218194004|gb|EEC76431.1| hypothetical protein OsI_14112 [Oryza sativa Indica Group]
gi|222626068|gb|EEE60200.1| hypothetical protein OsJ_13158 [Oryza sativa Japonica Group]
Length = 233
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/195 (66%), Positives = 155/195 (79%), Gaps = 11/195 (5%)
Query: 1 MSGVG-APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ 59
MSG G DFFYREAQRLGYVARSAFKL+QIQKQ+KLI PG++VLDLGCAPGAWLQVACQ
Sbjct: 1 MSGAGGTADFFYREAQRLGYVARSAFKLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQ 60
Query: 60 SLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
+LGPL+ GG +VG+DVKKVKVPS HCD+RV+TV ADV+ L Q RA+SP+++GFSVILS
Sbjct: 61 NLGPLEKGGVIVGVDVKKVKVPSAHCDSRVRTVCADVMALMKQQARAMSPQERGFSVILS 120
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGP-----AALASPVNNSDSST-----DSGVL 169
DMCP VSGITTKDAA+S ELGMRA+ LA+G + + + SST + G+L
Sbjct: 121 DMCPVVSGITTKDAAISCELGMRALSLAVGKMKAKDSDCIAILEKFQSSTEPDPDEDGIL 180
Query: 170 KPGGHLVIKLLESQD 184
+ GG LVIK LE++D
Sbjct: 181 RRGGSLVIKFLENED 195
>gi|27545053|gb|AAO18459.1| putative FtsJ cell division protein [Oryza sativa Japonica Group]
Length = 403
Score = 232 bits (591), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 129/195 (66%), Positives = 155/195 (79%), Gaps = 11/195 (5%)
Query: 1 MSGVG-APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ 59
MSG G DFFYREAQRLGYVARSAFKL+QIQKQ+KLI PG++VLDLGCAPGAWLQVACQ
Sbjct: 1 MSGAGGTADFFYREAQRLGYVARSAFKLIQIQKQHKLIAPGAAVLDLGCAPGAWLQVACQ 60
Query: 60 SLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
+LGPL+ GG +VG+DVKKVKVPS HCD+RV+TV ADV+ L Q RA+SP+++GFSVILS
Sbjct: 61 NLGPLEKGGVIVGVDVKKVKVPSAHCDSRVRTVCADVMALMKQQARAMSPQERGFSVILS 120
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGP---------AALASPVNNSDSSTDS-GVL 169
DMCP VSGITTKDAA+S ELGMRA+ LA+G A L ++++ D G+L
Sbjct: 121 DMCPVVSGITTKDAAISCELGMRALSLAVGKMKAKDSDCIAILEKFQSSTEPDPDEDGIL 180
Query: 170 KPGGHLVIKLLESQD 184
+ GG LVIK LE++D
Sbjct: 181 RRGGSLVIKFLENED 195
>gi|168031208|ref|XP_001768113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680551|gb|EDQ66986.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/186 (61%), Positives = 149/186 (80%), Gaps = 6/186 (3%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG G DFFYREA+RL YVARSAFKLL+IQK++++I+PG+SVLDLGCAPGA+LQVACQ+
Sbjct: 1 MSG-GTADFFYREARRLKYVARSAFKLLEIQKKHRIIRPGASVLDLGCAPGAFLQVACQN 59
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LGP + GG VVG+D+KKVKVP+ HCD RV+T+++DV+ + + + S KG+SV++SD
Sbjct: 60 LGPPEKGGVVVGVDIKKVKVPADHCDHRVRTIASDVMQMSHAALASFSASGKGYSVLISD 119
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
MCPSVSG+ +KDAALS ELGM A+ LALG S V++S T G+L PGG +VIKLL
Sbjct: 120 MCPSVSGVGSKDAALSAELGMCALHLALG----QSEVDDSIPET-GGILLPGGSIVIKLL 174
Query: 181 ESQDAQ 186
E +D+Q
Sbjct: 175 EGEDSQ 180
>gi|242037577|ref|XP_002466183.1| hypothetical protein SORBIDRAFT_01g003090 [Sorghum bicolor]
gi|241920037|gb|EER93181.1| hypothetical protein SORBIDRAFT_01g003090 [Sorghum bicolor]
Length = 233
Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 152/195 (77%), Gaps = 11/195 (5%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
M+ G DFFYRE+ RLGYVARSAFKL+Q+QKQ+KLI PG++VLDLGCAPGAWLQVACQ+
Sbjct: 1 MAAGGTADFFYRESLRLGYVARSAFKLIQMQKQHKLIAPGAAVLDLGCAPGAWLQVACQN 60
Query: 61 LGPLDNGGSVVGIDV-KKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
LGPL+ GG VVG+DV +KVKVPS HCD+RV+TV ADV+ + Q RA+SP+++GFSVILS
Sbjct: 61 LGPLEKGGVVVGVDVHQKVKVPSAHCDSRVRTVRADVMTMMKQQARAMSPQERGFSVILS 120
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASP-----VNNSDSST-----DSGVL 169
DMCP VSGITTKD A+S ELGMRA+ LA+G L + SST + GVL
Sbjct: 121 DMCPPVSGITTKDGAISCELGMRALSLAVGKIKLKESDYSEILEKYLSSTEPDPDEDGVL 180
Query: 170 KPGGHLVIKLLESQD 184
+ GG+LV+K LE++D
Sbjct: 181 RRGGNLVMKFLENED 195
>gi|302783825|ref|XP_002973685.1| hypothetical protein SELMODRAFT_99612 [Selaginella moellendorffii]
gi|302787935|ref|XP_002975737.1| hypothetical protein SELMODRAFT_104009 [Selaginella moellendorffii]
gi|300156738|gb|EFJ23366.1| hypothetical protein SELMODRAFT_104009 [Selaginella moellendorffii]
gi|300158723|gb|EFJ25345.1| hypothetical protein SELMODRAFT_99612 [Selaginella moellendorffii]
Length = 223
Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/182 (57%), Positives = 139/182 (76%), Gaps = 6/182 (3%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
PDFFY+EA RL YVARSAFKL++IQ++++++KPG+++LDLGCAPGAWLQVACQ+LG D
Sbjct: 6 PDFFYKEALRLRYVARSAFKLVEIQEKHRILKPGAAILDLGCAPGAWLQVACQNLGTRDQ 65
Query: 67 GGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK-GFSVILSDMCPSV 125
GG VVG+D KK+ VP H D RV+ ++ADV+ + + A++P+ K ++VILSDMCPSV
Sbjct: 66 GGVVVGVDTKKINVPGDHTDHRVKAIAADVMKIKPETLAAMTPEVKITYNVILSDMCPSV 125
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTD-SGVLKPGGHLVIKLLESQD 184
SGI KDA LS ELG RA++LALG P + DS+ +G+L P G LVIKLLE ++
Sbjct: 126 SGIGFKDATLSAELGSRALELALG----FHPDDERDSTKKVNGLLVPSGSLVIKLLEGEE 181
Query: 185 AQ 186
+Q
Sbjct: 182 SQ 183
>gi|388502384|gb|AFK39258.1| unknown [Medicago truncatula]
Length = 130
Score = 193 bits (490), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 102/112 (91%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
M+ GAPDFFY+EAQRLGYVARSAFKL+QIQKQ+KLIKPGSSVLDLGCAPG+WLQVACQS
Sbjct: 1 MAKSGAPDFFYKEAQRLGYVARSAFKLVQIQKQHKLIKPGSSVLDLGCAPGSWLQVACQS 60
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112
LGP NGGSV+GID KKVKVP+ HCD+RV+TV+ADV+ LP Q+R LSPKQK
Sbjct: 61 LGPFHNGGSVLGIDHKKVKVPTSHCDSRVKTVAADVMTLPKQQLRDLSPKQK 112
>gi|159466440|ref|XP_001691417.1| hypothetical protein CHLREDRAFT_183158 [Chlamydomonas reinhardtii]
gi|158279389|gb|EDP05150.1| predicted protein [Chlamydomonas reinhardtii]
Length = 254
Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 6/176 (3%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +++EA++ GYV+R+A+KLL+IQ ++K+IK G +VLDLGC+PGAWLQVACQ +GP + G
Sbjct: 35 DHYFKEAKKAGYVSRAAYKLLEIQDKHKIIKQGGTVLDLGCSPGAWLQVACQQIGPRERG 94
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D++ V VP CDARV+ + AD LP + + +P GF +LSDM SG
Sbjct: 95 GTVLGVDIQPVTVPERFCDARVRVMQADARTLPPSLLAEYAP--GGFDTVLSDMLQFTSG 152
Query: 128 ITTKDAALSVELGMRAVDLALGPA--ALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ D LS+EL A+ +A G +G L+PGG LV+K+ E
Sbjct: 153 VN--DVELSLELAGTALHIATGYHFDVYGEAYVQQVGFRHTGFLRPGGALVMKVYE 206
>gi|384250578|gb|EIE24057.1| 23S ribosomal RNA methyltransferase [Coccomyxa subellipsoidea
C-169]
Length = 236
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/194 (42%), Positives = 115/194 (59%), Gaps = 17/194 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F R A+ GYVARS+FKLL+IQ+++++++PG+ VLDLGCAPGAWLQVACQSLG
Sbjct: 8 DHFSRLAKAKGYVARSSFKLLEIQERFRVVRPGAHVLDLGCAPGAWLQVACQSLG--KKS 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSA--------DVINLPSNQVRALSPKQKGFSVILS 119
G V+G+D++ VP CD RV+ + A D++++ S A S GF +LS
Sbjct: 66 GFVLGLDIQACPVPRSFCDDRVRILQADARELRPVDLVSMHSVHSAAASSWSGGFHAVLS 125
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALG-------PAALASPVNNSDSSTDSGVLKPG 172
DMC S G + D S+EL A +A+G A+L + + GVL PG
Sbjct: 126 DMCHSTVGNSAADVLRSLELAQTAAAIAVGDREERDKKASLEEMYSTGPAGGRPGVLLPG 185
Query: 173 GHLVIKLLESQDAQ 186
GH V+KLL+ +Q
Sbjct: 186 GHFVVKLLQGSGSQ 199
>gi|303286059|ref|XP_003062319.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455836|gb|EEH53138.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 231
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 112/197 (56%), Gaps = 37/197 (18%)
Query: 5 GAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL 64
G DF+ +EA+RLGYVARSAFKLL++ ++ +++ G+ VLDLGC PGAW QVAC++LG
Sbjct: 9 GLTDFYAKEAKRLGYVARSAFKLLELSDRFGILRKGAHVLDLGCHPGAWTQVACRALGHP 68
Query: 65 DNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRAL---------------- 107
D GG V+G+D+++ ++ +L H D R + AD L ++RAL
Sbjct: 69 DEGGGVLGVDLRETELGTLRHVDRRARFAVADATTLCEKRLRALRGGDGDGDGDGDGDES 128
Query: 108 ---SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSST 164
+ + F+V+LSDM PS +G DAA S EL AV +ALG AL
Sbjct: 129 IATRRRTRPFTVVLSDMAPSTTGAADVDAARSYELAEAAVRIALGERAL----------- 177
Query: 165 DSGVLKPGGHLVIKLLE 181
GG LV+KLLE
Sbjct: 178 ------DGGSLVVKLLE 188
>gi|307111554|gb|EFN59788.1| hypothetical protein CHLNCDRAFT_18395, partial [Chlorella
variabilis]
Length = 205
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 113/179 (63%), Gaps = 11/179 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F+++A+ GYVARSA+KLL+IQ+++KLI G +LDLGC PGAWLQVAC+SLGP G
Sbjct: 2 DTFFKKAKASGYVARSAYKLLEIQQKHKLIPQGGQILDLGCHPGAWLQVACESLGPPSRG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++GID+++ P+ CD RV V AD LP + +P G+ +LSDMC G
Sbjct: 62 GRILGIDMQR---PA-KCDERVTIVQADATLLPPEFWQEQAP--DGYDAVLSDMCHFTLG 115
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
+ DA S+EL A +A G A A P +++ GVL+PGG L++KLL+ Q
Sbjct: 116 NSMADAYKSLELARTAWAIATGGEA-AYP----NATLSRGVLRPGGTLLMKLLQGPGTQ 169
>gi|255075125|ref|XP_002501237.1| predicted protein [Micromonas sp. RCC299]
gi|226516501|gb|ACO62495.1| predicted protein [Micromonas sp. RCC299]
Length = 238
Score = 138 bits (348), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 115/198 (58%), Gaps = 29/198 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DFF REA++LGY ARSA KL +IQ ++ +++PG +VLDLGC PGAW QVA +
Sbjct: 8 DFFAREAKKLGYAARSALKLKEIQDRFGVMRPGDAVLDLGCHPGAWTQVASER-----GA 62
Query: 68 GSVVGIDVKKVKVPSL--HCDARVQTVS-ADVINLPSNQVRAL------SP--KQKGFSV 116
GSVVG+D+ + +L D R T++ ADV +L +RAL SP + + F+
Sbjct: 63 GSVVGVDLTTTRSDALGPRVDPRRTTLTVADVFDLDPPALRALCGSGGASPASRSRPFAA 122
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALA-------------SPVNNSDSS 163
+LSDM PS SG KDAALS EL +AV LALG ALA +
Sbjct: 123 VLSDMAPSTSGDGVKDAALSYELAEQAVRLALGARALAVLDGDDDDDDREGDRDGDGHLE 182
Query: 164 TDSGVLKPGGHLVIKLLE 181
D GVL+ GG LV+KLLE
Sbjct: 183 HDPGVLRKGGSLVVKLLE 200
>gi|308801797|ref|XP_003078212.1| elongation factor P (ISS) [Ostreococcus tauri]
gi|116056663|emb|CAL52952.1| elongation factor P (ISS) [Ostreococcus tauri]
Length = 475
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 19/173 (10%)
Query: 12 REAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS-- 69
REA+RLGYVARSA KL+Q+ ++++L++ SVLDLGCAPGAW+QV + GG+
Sbjct: 274 REAKRLGYVARSALKLVQLDEKFRLLRNKRSVLDLGCAPGAWIQVVHER--TRRQGGTCA 331
Query: 70 -VVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI 128
V+GID+K++ +L V A + L + + RA + F +LSDM + G+
Sbjct: 332 RVLGIDLKEIDRGTLAGLRHVDAARASTMTLDATEARASDLGVETFDAVLSDMMVNTRGL 391
Query: 129 TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ DAA S+EL AVDLA+ D GVL G LV+K+LE
Sbjct: 392 ASVDAAASLELAECAVDLAV--------------VRDGGVLAARGDLVVKILE 430
>gi|452851618|ref|YP_007493302.1| Ribosomal RNA large subunit methyltransferase E [Desulfovibrio
piezophilus]
gi|451895272|emb|CCH48151.1| Ribosomal RNA large subunit methyltransferase E [Desulfovibrio
piezophilus]
Length = 199
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 97/181 (53%), Gaps = 29/181 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +++ A++ Y ARS +KL ++ K++KL KPG +VLDLG APG+W Q A + +G
Sbjct: 6 DKYFKRAKKENYAARSVYKLKEMDKRFKLFKPGQTVLDLGAAPGSWTQFAGERVG---KT 62
Query: 68 GSVVGIDVKKVK--VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G V+G+D+++ K P + + ADV + + A+ P + F +I+SDM P
Sbjct: 63 GHVLGVDIQETKHSFPE-----NITFLQADVFSDAPELLEAMEP-LRPFDLIISDMAPKT 116
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
+GI D A S+EL RA ++AL LK GGH +K+ ES D
Sbjct: 117 TGIKFADQANSLELCERAFEVAL------------------KYLKTGGHFTVKIFESGDT 158
Query: 186 Q 186
+
Sbjct: 159 K 159
>gi|289597003|ref|YP_003483699.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Aciduliprofundum boonei
T469]
gi|289534790|gb|ADD09137.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Aciduliprofundum boonei
T469]
Length = 195
Score = 108 bits (271), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 97/174 (55%), Gaps = 29/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y EA++ GY +R++FKLLQI ++ LI+ G +VLDLG APG W QVA + +G
Sbjct: 5 DYYYWEAKKRGYKSRASFKLLQINDRFYLIRKGYTVLDLGAAPGGWSQVALKIVG---RE 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ +D+K VK+ V+ + DV + ++ + + + V+LSDM P +SG
Sbjct: 62 GRVIAVDIKPVKLRD------VEYIRGDVYS--DETLKRIKERAEKVDVVLSDMSPKISG 113
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
I++ D A S++L RA+ +A VL+ GH V+K+ +
Sbjct: 114 ISSWDHARSIDLAERALFIA------------------ENVLRERGHFVVKIFQ 149
>gi|448481917|ref|ZP_21605232.1| 23S rRNA methyltransferase J [Halorubrum arcis JCM 13916]
gi|445821616|gb|EMA71405.1| 23S rRNA methyltransferase J [Halorubrum arcis JCM 13916]
Length = 261
Score = 108 bits (270), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 100/184 (54%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY ARSA+KL Q+ ++ L+ PG +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDDYYNRSKQQGYRARSAYKLKQLDEEADLLGPGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D+++++ H ++T+ D+ + + + G V+LSD
Sbjct: 58 VG---ESGTVVGVDLQRIEELDDHD---IETLRGDMTEERTRHYLREAVDEGGADVVLSD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G + D A SV L +A+D A +L PGG V+K+
Sbjct: 112 MAPNMTGEYSLDHARSVHLARQALDTA------------------DELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ QD
Sbjct: 154 QGQD 157
>gi|222478870|ref|YP_002565107.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorubrum lacusprofundi
ATCC 49239]
gi|254809555|sp|B9LSX2.1|RLME_HALLT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|222451772|gb|ACM56037.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorubrum lacusprofundi
ATCC 49239]
Length = 269
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y ++++ GY ARSA+KL QI ++ L + G +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDEYYNKSKQQGYRARSAYKLKQIDEEANLFERGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + ++G V++SD
Sbjct: 58 VG---ESGTVVGVDLQRIDDLDDHD---VETIRGDMTEERTRHYLREAIGERGADVVISD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G D A SV L +A D+A +L PGG V+K+
Sbjct: 112 MAPNMTGEYALDHARSVHLARQAFDVA------------------EELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>gi|116748440|ref|YP_845127.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Syntrophobacter
fumaroxidans MPOB]
gi|143461985|sp|A0LGZ0.1|RLME_SYNFM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|116697504|gb|ABK16692.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Syntrophobacter
fumaroxidans MPOB]
Length = 197
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 26/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A++ Y+AR+ +KL +IQ +YK++KPG+ VLDLG APG+W+Q A + +GP
Sbjct: 7 DHYFHKAKKEHYLARAVYKLQEIQDRYKILKPGNRVLDLGAAPGSWMQFAREIVGP---S 63
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+K V+ V + DV + R+LS + F V+LSDM PS SG
Sbjct: 64 GLVVGVDLKGVE---HRFPEGVVVLQGDVTD--PELARSLSVEHGPFDVVLSDMAPSTSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
I D+A S L A+++A L+PGGH V KL +
Sbjct: 119 IRVADSARSALLFESALEMA------------------RSALRPGGHFVAKLFQ 154
>gi|448450712|ref|ZP_21592445.1| 23S rRNA methyltransferase J [Halorubrum litoreum JCM 13561]
gi|448510553|ref|ZP_21615930.1| 23S rRNA methyltransferase J [Halorubrum distributum JCM 9100]
gi|448522282|ref|ZP_21618405.1| 23S rRNA methyltransferase J [Halorubrum distributum JCM 10118]
gi|445695826|gb|ELZ47925.1| 23S rRNA methyltransferase J [Halorubrum distributum JCM 9100]
gi|445702226|gb|ELZ54184.1| 23S rRNA methyltransferase J [Halorubrum distributum JCM 10118]
gi|445811223|gb|EMA61231.1| 23S rRNA methyltransferase J [Halorubrum litoreum JCM 13561]
Length = 263
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY ARSA+KL QI ++ L+ PG +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDDYYNRSKQQGYRARSAYKLKQIAEEADLLAPGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + + G +LSD
Sbjct: 58 VG---ESGTVVGVDLQRIDELDEHD---VETIRGDMTEERTRHYLREAVGEGGADAVLSD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G D A SV L +A+D A +L PGG V+K+
Sbjct: 112 MAPNMTGEYNLDHARSVHLARQALDAA------------------DELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>gi|432329166|ref|YP_007247310.1| 23S rRNA methylase [Aciduliprofundum sp. MAR08-339]
gi|432135875|gb|AGB05144.1| 23S rRNA methylase [Aciduliprofundum sp. MAR08-339]
Length = 195
Score = 106 bits (264), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 98/174 (56%), Gaps = 29/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y EA+R GY +R++FKLLQI ++ +I+PG VLDLG +PG W QVA + +G
Sbjct: 5 DFYYWEAKRRGYRSRASFKLLQINDRFYIIRPGYRVLDLGASPGGWSQVALKLVG---EE 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+DVK +KV V+ V +V + + V+ + V++SDM P++SG
Sbjct: 62 GMVIGVDVKPIKVSG------VKFVRGNVYD--EDIVQRIMRYTDYVDVVISDMAPNISG 113
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ + D A SV+L RA+ +A +L+ GHL++K+ +
Sbjct: 114 VASWDHARSVDLAERALFIA------------------EKMLRERGHLLVKVFQ 149
>gi|448425055|ref|ZP_21582684.1| 23S rRNA methyltransferase J [Halorubrum terrestre JCM 10247]
gi|445681315|gb|ELZ33749.1| 23S rRNA methyltransferase J [Halorubrum terrestre JCM 10247]
Length = 263
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY ARSA+KL QI + L+ PG +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDDYYNRSKQQGYRARSAYKLKQIAAEADLLAPGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + + G +LSD
Sbjct: 58 VG---ESGTVVGVDLQRIDELDEHD---VETIRGDMTEERTRHYLREAVGEGGADAVLSD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G D A SV L +A+D A +L PGG V+K+
Sbjct: 112 MAPNMTGEYNLDHARSVHLARQALDAA------------------DELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>gi|218780797|ref|YP_002432115.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfatibacillum
alkenivorans AK-01]
gi|254809549|sp|B8FL12.1|RLME_DESAA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|218762181|gb|ACL04647.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfatibacillum
alkenivorans AK-01]
Length = 207
Score = 105 bits (262), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 27/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ G+ ARS FKL ++QK++K+++PG VLDLGCAPG+WL+ A Q +G +
Sbjct: 13 DHYTDKAQKAGFPARSVFKLEEMQKRWKILRPGQKVLDLGCAPGSWLKYASQIVG---DS 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+K + P Q + D L + + + F V+LSDM P+ +G
Sbjct: 70 GRVIGLDLKPMDQPD---KPNAQFIQGDAFELTQEFLDEIG---RDFDVVLSDMAPNTTG 123
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
I DA S AL +ALA+ V VLKPGG V K+ + +
Sbjct: 124 IKNVDALKSA---------ALCESALAAAVT---------VLKPGGSFVCKIFQGE 161
>gi|335437288|ref|ZP_08560070.1| ribosomal RNA large subunit methyltransferase E [Halorhabdus
tiamatea SARL4B]
gi|334896418|gb|EGM34569.1| ribosomal RNA large subunit methyltransferase E [Halorhabdus
tiamatea SARL4B]
Length = 256
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 27/186 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSAFKL Q+ + L+ +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDKYYNRAKQQGYRARSAFKLRQLDETADLLGAERTVVDLGAAPGGWLQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LG +GG VVG+D +++ P D V+T+ D+ + + V A++ +++LSD
Sbjct: 58 LG---DGGRVVGVDRQRID-PLEDTDVPVETIRGDITD--ESTVEAITDAVGEANLVLSD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+V+G D A SV L +A ++AL VL GG LV+K+
Sbjct: 112 MAPNVTGEYDLDHARSVHLARQAFEVAL------------------DVLGAGGDLVVKVF 153
Query: 181 ESQDAQ 186
+ +D +
Sbjct: 154 DGRDLE 159
>gi|448471992|ref|ZP_21601019.1| 23S rRNA methyltransferase J [Halorubrum aidingense JCM 13560]
gi|445820419|gb|EMA70242.1| 23S rRNA methyltransferase J [Halorubrum aidingense JCM 13560]
Length = 263
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY ARSA+KL Q+ ++ L G +V+DLG APG WLQ+A +
Sbjct: 1 MSG---KDDYYNRSKQQGYRARSAYKLKQLDEEADLFDSGDTVVDLGAAPGGWLQIAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + ++G V++SD
Sbjct: 58 VG---ESGTVVGVDLQRIDDFDDHD---VETIRGDMTQERTRHYLREAIGERGADVVISD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G + D A SV L +A D+A +L PGG V+K+
Sbjct: 112 MAPNMTGEYSLDHARSVHLARQAFDVA------------------EELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>gi|448434687|ref|ZP_21586461.1| 23S rRNA methyltransferase J [Halorubrum tebenquichense DSM 14210]
gi|445684683|gb|ELZ37056.1| 23S rRNA methyltransferase J [Halorubrum tebenquichense DSM 14210]
Length = 260
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY ARSA+KL QI ++ L + G +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDDYYNRSKQQGYRARSAYKLKQIDEEADLFERGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + ++G V++SD
Sbjct: 58 VG---EAGTVVGVDLQRIDDLDDHD---VETIRGDMTEERTRHYLREAVDEEGADVVVSD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G T D A SV L +A D A +L GG V+K+
Sbjct: 112 MAPNMTGEYTLDHARSVHLARQAFDAA------------------DELLASGGDFVVKVF 153
Query: 181 ESQD 184
+ D
Sbjct: 154 QGDD 157
>gi|354609708|ref|ZP_09027664.1| Ribosomal RNA large subunit methyltransferase E [Halobacterium sp.
DL1]
gi|353194528|gb|EHB60030.1| Ribosomal RNA large subunit methyltransferase E [Halobacterium sp.
DL1]
Length = 257
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 23/177 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY R+A+KL QI ++ L+ G++V+DLG APG WLQVA + G
Sbjct: 6 DHYYNKSKQEGYRTRAAYKLQQIDDEFGLLFGGATVVDLGAAPGGWLQVAAEEAGAR--- 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D + ++ + +A QT+ D+ + + + G V+LSDM P+++G
Sbjct: 63 GRVIGVDFQ--RIDDIDTEAGFQTIRGDMTEEDTREQIRQAAGSSGVDVVLSDMAPNMTG 120
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
D A SV L +A+D A VL GGH +K+ + QD
Sbjct: 121 EYNLDHARSVHLARQALDTA------------------REVLVDGGHFAVKVFDGQD 159
>gi|256809981|ref|YP_003127350.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
fervens AG86]
gi|256793181|gb|ACV23850.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
fervens AG86]
Length = 246
Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 93/144 (64%), Gaps = 12/144 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y+ A++L Y +R++FKL+Q+ +++ +IKPG VLDLGCAPG W+QVA + +G +
Sbjct: 15 DFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGRIVLDLGCAPGGWMQVAREIVG---DK 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI---NLPSNQVRALSP-KQKGFSVILSDMCP 123
G V+GID++ VK P + + R + D NL N++R L P ++K V++SD P
Sbjct: 72 GFVIGIDLQPVK-PFEYDNVR--AIKGDFTLEENL--NKIRELIPNEEKKVDVVISDASP 126
Query: 124 SVSGITTKDAALSVELGMRAVDLA 147
++SG D A S++L A+ +A
Sbjct: 127 NISGYWDVDHARSIDLVTTALQIA 150
>gi|158520389|ref|YP_001528259.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfococcus oleovorans
Hxd3]
gi|254809550|sp|A8ZT18.1|RLME_DESOH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|158509215|gb|ABW66182.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfococcus oleovorans
Hxd3]
Length = 207
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 27/184 (14%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G PD + R+A+ Y ARS +KL +IQK++ ++KPG++VLDLGC PG+W+ A +++G
Sbjct: 8 GRKTPDHYARKAKTEHYPARSVYKLQEIQKKHNVLKPGNAVLDLGCFPGSWMMFAAETVG 67
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
GG V GID+KKV + H A+ ++ D+ + AL+ V+LSDM
Sbjct: 68 ---RGGKVTGIDLKKV---ATHMPAQATSLQEDIYEIDRE---ALAGTLGPLDVVLSDMA 118
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P G DAA S + + +LKPGGH V K+ +
Sbjct: 119 PDTMGNKFTDAARSFH------------------LAAAALDLALFLLKPGGHFVCKVFQG 160
Query: 183 QDAQ 186
+D Q
Sbjct: 161 EDFQ 164
>gi|448456751|ref|ZP_21595407.1| 23S rRNA methyltransferase J [Halorubrum lipolyticum DSM 21995]
gi|445811348|gb|EMA61355.1| 23S rRNA methyltransferase J [Halorubrum lipolyticum DSM 21995]
Length = 265
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 98/184 (53%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY +R+++KL Q+ ++ L + G +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDDYYNRSKQQGYRSRASYKLKQLDEEADLFERGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+V+G+D++++ H VQT+ D+ + + ++G V++SD
Sbjct: 58 VG---ESGTVIGVDLQRIDDLEEHD---VQTLRGDMTEERTRHYLREAVGERGADVVISD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G D A SV L +A D+A +L PGG V+K+
Sbjct: 112 MAPNMTGEYALDHARSVHLARQAFDVA------------------EELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>gi|448467750|ref|ZP_21599579.1| 23S rRNA methyltransferase J [Halorubrum kocurii JCM 14978]
gi|445811836|gb|EMA61837.1| 23S rRNA methyltransferase J [Halorubrum kocurii JCM 14978]
Length = 265
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY +R+++KL QI ++ L + G +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDEYYNRSKQQGYRSRASYKLKQIDEESALFERGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + ++G ++SD
Sbjct: 58 VG---ESGTVVGVDLQRIDDFEEHD---VETIRGDMTEERTRHYLREAVGERGADAVISD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G D A SV L +A D+A +L PGG V+K+
Sbjct: 112 MAPNMTGEYALDHARSVHLARQAFDVA------------------EELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>gi|448376549|ref|ZP_21559641.1| 23S rRNA methyltransferase J [Halovivax asiaticus JCM 14624]
gi|445657131|gb|ELZ09962.1| 23S rRNA methyltransferase J [Halovivax asiaticus JCM 14624]
Length = 270
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 13/151 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ LI G +VLDLG APG WLQVA + +GP
Sbjct: 5 DHYYNKAKQEGYRARSAYKLQQLDDLEGLIDRGDTVLDLGAAPGGWLQVAAERVGPE--- 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFS---------VI 117
G+V+G+D +++ D R++T+ DV + +++R + G S V+
Sbjct: 62 GTVIGVDFQRIDGFDDEIDDRIETLRGDVTETKTLDRIRRAAGASDGESNGERGGAVDVV 121
Query: 118 LSDMCPSVSGITTKDAALSVELGMRAVDLAL 148
LSDM P+V+G + D A S+ L A ++AL
Sbjct: 122 LSDMAPNVTGEYSLDQARSLHLARTASEVAL 152
>gi|313124823|ref|YP_004035087.1| 23S rRNA um-2552 2'-o-methyltransferase [Halogeometricum
borinquense DSM 11551]
gi|448286758|ref|ZP_21477979.1| 23S rRNA methyltransferase J [Halogeometricum borinquense DSM
11551]
gi|312291188|gb|ADQ65648.1| 23S rRNA Um-2552 2'-O-methyltransferase [Halogeometricum
borinquense DSM 11551]
gi|445573730|gb|ELY28248.1| 23S rRNA methyltransferase J [Halogeometricum borinquense DSM
11551]
Length = 256
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 99/177 (55%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY RSA+KL Q+ ++ L PG++V+DLG APG WLQVA + + +
Sbjct: 4 DHYYNKAKQEGYRTRSAYKLKQLDEETGLFGPGNTVVDLGAAPGGWLQVAAEEVS---DH 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+VVG+D+++++ + D V+T+ D+ + + + ++G V++SDM P+++G
Sbjct: 61 GTVVGVDLQRIR--DIDAD-NVETIRGDMTDEETKESLRERIGEEGADVVISDMAPNMTG 117
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A ++AL +L GG +K+ + QD
Sbjct: 118 EYSLDHARSIHLARQAFEVAL------------------DLLPAGGDFAVKVFDGQD 156
>gi|433639801|ref|YP_007285561.1| 23S rRNA methylase [Halovivax ruber XH-70]
gi|433291605|gb|AGB17428.1| 23S rRNA methylase [Halovivax ruber XH-70]
Length = 269
Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 12/150 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ LI G +VLDLG APG WLQVA + +GP
Sbjct: 5 DHYYNKAKQEGYRARSAYKLQQLDDLEGLIDRGDTVLDLGAAPGGWLQVAAERVGPE--- 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFS--------VIL 118
G+V+G+D +++ D R++T+ DV + +++R + G S V+L
Sbjct: 62 GTVIGVDFQRIDGFDDEIDDRIETLRGDVTEAKTLDRIRRAAGASDGESNGERGAVDVVL 121
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLAL 148
SDM P+V+G + D A S+ L A ++AL
Sbjct: 122 SDMAPNVTGEYSLDQARSLHLARTASEVAL 151
>gi|289192039|ref|YP_003457980.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
sp. FS406-22]
gi|288938489|gb|ADC69244.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
sp. FS406-22]
Length = 246
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 88/141 (62%), Gaps = 6/141 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y+ A++L Y +R++FKL+Q+ +++ +IKPG VLDLGCAPG W+QVA + +G +
Sbjct: 15 DFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAREIVG---DK 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSP-KQKGFSVILSDMCPSVS 126
G ++GID++ VK D V + N++R L P ++K V++SD P++S
Sbjct: 72 GFIIGIDLQPVK--PFEYDNVVAIKGDFTLEESLNKIRELIPNEEKKVDVVISDASPNIS 129
Query: 127 GITTKDAALSVELGMRAVDLA 147
G D A S++L A+ +A
Sbjct: 130 GYWDIDHARSIDLVTTALQIA 150
>gi|298529995|ref|ZP_07017397.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509369|gb|EFI33273.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfonatronospira
thiodismutans ASO3-1]
Length = 198
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 93/181 (51%), Gaps = 30/181 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R+A++ Y ARS +KL ++ +++ L++PG VLDLG +PG+W A Q + +
Sbjct: 6 DHYSRQARQDNYPARSVYKLKEMDRRFSLLRPGQKVLDLGASPGSWCSFAAQK---VQSR 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSV 125
G V+ +D+K+ P+L V + D+I N QVR +P F ++LSDM P
Sbjct: 63 GFVLAVDLKE---PTLSFPQHVVFIQGDIINDNAAREQVRDFAP----FDLVLSDMAPKT 115
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
+GI D A S EL A DLA +L PGG +V+K+ E D
Sbjct: 116 TGIKITDQARSHELAREAFDLA------------------REMLGPGGSMVVKIFEGPDV 157
Query: 186 Q 186
Q
Sbjct: 158 Q 158
>gi|15669566|ref|NP_248379.1| cell division protein FtsJ [Methanocaldococcus jannaschii DSM 2661]
gi|3023819|sp|Q58771.1|RLME_METJA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|1592021|gb|AAB99383.1| cell division protein FtsJ [Methanocaldococcus jannaschii DSM 2661]
Length = 245
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 87/141 (61%), Gaps = 6/141 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y+ A++L Y +R++FKL+Q+ +++ +IKPG VLDLGCAPG W+QVA + +G +
Sbjct: 15 DFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAREIVG---DK 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPK-QKGFSVILSDMCPSVS 126
G V+GID++ VK D V + N++R L P +K V++SD P++S
Sbjct: 72 GFVIGIDLQPVK--PFEYDNVVAIKGDFTLEENLNKIRELIPNDEKKVDVVISDASPNIS 129
Query: 127 GITTKDAALSVELGMRAVDLA 147
G D A S++L A+ +A
Sbjct: 130 GYWDIDHARSIDLVTTALQIA 150
>gi|312136699|ref|YP_004004036.1| 23S rRNA um-2552 2'-o-methyltransferase [Methanothermus fervidus
DSM 2088]
gi|311224418|gb|ADP77274.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanothermus fervidus
DSM 2088]
Length = 203
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 25/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++YR A++ Y +R+A+KL+Q+ K++KLI+ G+ VLDLG APG W QVA + +G +
Sbjct: 12 DYYYRLAKKEKYYSRAAYKLIQLNKKFKLIRRGNVVLDLGAAPGGWSQVAIKLVG---SK 68
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV +D+KK+K + +Q D P Q + + G VI+SD PS+SG
Sbjct: 69 GKVVAVDIKKMKPLKYENFSFIQGDFTD----PKIQKKIKEITEGGVDVIISDASPSLSG 124
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
I D S+EL +++A VLK GG+LV+K+ +
Sbjct: 125 IKDLDHIRSIELCKSVINIA------------------KNVLKRGGNLVVKVFQ 160
>gi|448417283|ref|ZP_21579301.1| 23S rRNA methyltransferase J [Halosarcina pallida JCM 14848]
gi|445678506|gb|ELZ30999.1| 23S rRNA methyltransferase J [Halosarcina pallida JCM 14848]
Length = 257
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY RSA+KL Q+ ++ L PG++V+DLG APG WLQVA +++G +
Sbjct: 5 DHYYNKAKQEGYRTRSAYKLKQLDEETGLFGPGNTVVDLGAAPGGWLQVAAEAVG---DQ 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+VVG+D ++++ L V+T+ D+ + + ++G V++SDM P+++G
Sbjct: 62 GAVVGVDFQRIR--DLDS-GNVETIKGDMTEEATKERLRERIGEEGADVVISDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A ++AL +L GG +K+ + QD
Sbjct: 119 EYSLDHARSIHLARQAFEVAL------------------ELLPAGGDFAVKVFDGQD 157
>gi|448611198|ref|ZP_21661832.1| 23S rRNA methyltransferase J [Haloferax mucosum ATCC BAA-1512]
gi|445743630|gb|ELZ95111.1| 23S rRNA methyltransferase J [Haloferax mucosum ATCC BAA-1512]
Length = 257
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ + L PG++V+DLG APG WLQVA + +G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDEDAGLFGPGNTVVDLGAAPGGWLQVASERVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ H ++T+ D+ + + S + G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIRDLDHHN---IETIRGDMTEDETKERLTASIGEAGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A ++A +L GG +K+ + QD
Sbjct: 119 EYSLDHARSIYLARQAFEVA------------------QELLATGGDFAVKVFDGQD 157
>gi|189014944|gb|ACD69681.1| methyl transferase [Mangifera indica]
Length = 115
Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 64/81 (79%), Gaps = 9/81 (11%)
Query: 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPV--------NNSDSSTD- 165
SVILSDMCPSVSGITTKDAALS ELGMRA+DLA+G AA PV N+S+S D
Sbjct: 1 SVILSDMCPSVSGITTKDAALSAELGMRALDLAVGCAASPHPVGDQGERHLNDSNSDPDE 60
Query: 166 SGVLKPGGHLVIKLLESQDAQ 186
+GVLKPGGHLVIKLLES+D +
Sbjct: 61 NGVLKPGGHLVIKLLESEDVK 81
>gi|302344658|ref|YP_003809187.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfarculus baarsii
DSM 2075]
gi|301641271|gb|ADK86593.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfarculus baarsii
DSM 2075]
Length = 207
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 27/172 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A++ G+ ARS +KL ++ ++Y L++ G VLD+GC PG+WLQ A +GP G
Sbjct: 8 DSYYRRAKQEGFAARSVYKLQEMDQRYGLLRQGMRVLDIGCHPGSWLQYAAGRVGP---G 64
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++++ V +Q ADV+ L +V A++P F V+LSD+ P +G
Sbjct: 65 GLVLGVDIQELAVDLPRWGRFIQ---ADVLKLTPAEVLAVAP---AFDVVLSDVAPRTTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
+ D A S+ + DLAL VL+PGG + K+
Sbjct: 119 VRHADEAASLAMLEAVFDLAL------------------AVLRPGGSFLAKV 152
>gi|448578971|ref|ZP_21644301.1| 23S rRNA methyltransferase J [Haloferax larsenii JCM 13917]
gi|445724725|gb|ELZ76355.1| 23S rRNA methyltransferase J [Haloferax larsenii JCM 13917]
Length = 257
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 96/177 (54%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ ++ L PG++V+DLG APG WLQVA + +G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDREAGLFGPGNTVVDLGAAPGGWLQVASEKVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ H V+TV D+ + + ++G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIRDIDHHN---VETVRGDMTEDDTKEQLKDIVGEQGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A ++A +L GG +K+ + QD
Sbjct: 119 EYSLDHARSIYLARQAFEVA------------------QELLATGGDFAVKVFDGQD 157
>gi|448312389|ref|ZP_21502135.1| 23S rRNA methyltransferase J [Natronolimnobius innermongolicus JCM
12255]
gi|445601774|gb|ELY55757.1| 23S rRNA methyltransferase J [Natronolimnobius innermongolicus JCM
12255]
Length = 260
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 22/177 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY +R+A+KL Q+ +I G +V+DLG APG WLQVA + +GP
Sbjct: 5 DDYYNRAKQEGYRSRAAYKLKQLDDLENVINGGDTVVDLGAAPGGWLQVAAEKVGPR--- 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D++++K D RV+T+ D+ + + R + ++SDM P++SG
Sbjct: 62 GNVIGVDLQRIKDLEGTIDERVETIRGDMTEDRTRE-RVIDAAGGEVDAVVSDMAPNMSG 120
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + AL +L GG+ V+K+ E D
Sbjct: 121 EYSLDQARSLYLARQAFETAL------------------ELLDTGGNFVVKVFEGPD 159
>gi|110669535|ref|YP_659346.1| ribosomal RNA large subunit methyltransferase J [Haloquadratum
walsbyi DSM 16790]
gi|121692027|sp|Q18E61.1|RLME_HALWD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|109627282|emb|CAJ53772.1| 23S rRNA (uridine-2'-O-) methyltransferase [Haloquadratum walsbyi
DSM 16790]
Length = 256
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY RSA+KL QI + PG++V+DLG APG WLQVA +++GP
Sbjct: 5 DEYYNRAKQEGYRTRSAYKLQQIDADAGVFGPGNTVIDLGAAPGGWLQVAAEAVGP---S 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D ++++ L D V T+ D+ + + +V+LSDM P+++G
Sbjct: 62 GTVIGVDFQRIR--DLESDI-VDTIRGDMTDESTKNALRKRVNNSSVNVVLSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A SV L +A +A + +L GG ++K+ + +D
Sbjct: 119 EYSVDHARSVHLARQAFSVA------------------TDILPAGGDFIVKVFDGRD 157
>gi|257052864|ref|YP_003130697.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorhabdus utahensis
DSM 12940]
gi|256691627|gb|ACV11964.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halorhabdus utahensis
DSM 12940]
Length = 256
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 99/184 (53%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSAFKL Q+ + L+ +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDKYYNRAKQQGYRARSAFKLRQLDETADLLGAERTVVDLGAAPGGWLQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
LG +GG VVG+D +++ D V+T+ D+ + + V A++ +++LSD
Sbjct: 58 LG---DGGRVVGVDRQRIDDLE-EPDVPVETIRGDITD--ESTVEAITDAVGEANLVLSD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+V+G D A SV L +A +++L VL GG LV+K+
Sbjct: 112 MAPNVTGEYDLDHARSVHLARQAFEVSL------------------DVLGAGGDLVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 DGRD 157
>gi|336252952|ref|YP_004596059.1| ribosomal RNA large subunit methyltransferase E [Halopiger
xanaduensis SH-6]
gi|335336941|gb|AEH36180.1| Ribosomal RNA large subunit methyltransferase E [Halopiger
xanaduensis SH-6]
Length = 260
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 22/177 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY +R+A+KL Q+ +I G +V+DLG APG WLQVA + +GP
Sbjct: 5 DHYYNKSKQEGYRSRAAYKLKQLDDLENVIDRGDAVVDLGAAPGGWLQVAAEKVGPE--- 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D++++K + RV+T+ D+ + R + + ++SDM P++SG
Sbjct: 62 GRVVGVDLQRIKPFDDDINERVETIRGDMTEERTRD-RVIDAAEGKVDAVVSDMAPNMSG 120
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + AL +L GG V+K+ E D
Sbjct: 121 EYSLDQARSLHLARQAFETAL------------------ELLDTGGDFVVKVFEGPD 159
>gi|385804992|ref|YP_005841392.1| ribosomal RNA large subunit methyltransferase J [Haloquadratum
walsbyi C23]
gi|339730484|emb|CCC41824.1| 23S rRNA (uridine-2'-O-) methyltransferase [Haloquadratum walsbyi
C23]
Length = 256
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY RSA+KL QI + PG++V+DLG APG WLQVA +++GP
Sbjct: 5 DEYYNRAKQEGYRTRSAYKLQQIDADAGVFGPGNTVIDLGAAPGGWLQVAAEAVGP---S 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D ++++ L D V T+ D+ + + V+LSDM P+++G
Sbjct: 62 GTVIGVDFQRIR--DLESDI-VDTIRGDMTDESTKNALRKRVNNSSVDVVLSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A +A + +L GG ++K+ + +D
Sbjct: 119 EYSVDHARSIHLARQAFSVA------------------TDILPAGGDFIVKVFDGRD 157
>gi|15791077|ref|NP_280901.1| hypothetical protein VNG2263G [Halobacterium sp. NRC-1]
gi|169236828|ref|YP_001690028.1| 23S rRNA methyltransferase [Halobacterium salinarum R1]
gi|74568838|sp|Q9HN40.1|RLME_HALSA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703307|sp|B0R7G3.1|RLME_HALS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|10581676|gb|AAG20381.1| cell division protein [Halobacterium sp. NRC-1]
gi|167727894|emb|CAP14682.1| 23S rRNA (uridine-2'-O-) methyltransferase [Halobacterium salinarum
R1]
Length = 259
Score = 99.4 bits (246), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY +R+A+KL Q+ ++ ++ G+SV+DLG APG WLQVA + G
Sbjct: 6 DHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGAR--- 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D + + DA ++TV D+ + Q R V++SDM P ++G
Sbjct: 63 GKVVGVDFQ--SITQFETDAGLETVRGDMTEDETRQ-RVRDAANGSADVVVSDMAPDMTG 119
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A SV L +A++ A +L GGH V+K+ + +D Q
Sbjct: 120 EYDLDHARSVHLARQALETA------------------RELLDAGGHFVVKVFDGRDFQ 160
>gi|448589333|ref|ZP_21649492.1| 23S rRNA methyltransferase J [Haloferax elongans ATCC BAA-1513]
gi|445735761|gb|ELZ87309.1| 23S rRNA methyltransferase J [Haloferax elongans ATCC BAA-1513]
Length = 257
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ + L PG++V+DLG APG WLQVA + +G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDSETGLFGPGNTVVDLGAAPGGWLQVASEKVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ H V+TV D+ + + ++G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIRDIDHHN---VETVRGDMTEDDTKEKLKDIVGEQGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A ++A +L GG +K+ + QD
Sbjct: 119 EYSLDHARSIYLARQAFEVA------------------QELLATGGDFAVKVFDGQD 157
>gi|429191472|ref|YP_007177150.1| 23S rRNA methylase [Natronobacterium gregoryi SP2]
gi|448325400|ref|ZP_21514791.1| 23S rRNA methyltransferase J [Natronobacterium gregoryi SP2]
gi|429135690|gb|AFZ72701.1| 23S rRNA methylase [Natronobacterium gregoryi SP2]
gi|445615358|gb|ELY69006.1| 23S rRNA methyltransferase J [Natronobacterium gregoryi SP2]
Length = 260
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 22/177 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WLQVA +++G +
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDELEDVISRGDTVVDLGAAPGGWLQVAAEAVG---SE 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++++K D R++T+ D+ + + R + V++SDM P++SG
Sbjct: 62 GQVIGVDLQRIKGFDDEIDDRIETLRGDMTEERTRE-RVVDAAGGTVDVVVSDMAPNMSG 120
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + A + +L GG V+K+ E D
Sbjct: 121 EYSLDQARSLHLARQAYETA------------------TELLDTGGDFVVKIFEGPD 159
>gi|386002741|ref|YP_005921040.1| ribosomal RNA large subunit methyltransferase E [Methanosaeta
harundinacea 6Ac]
gi|357210797|gb|AET65417.1| Ribosomal RNA large subunit methyltransferase E [Methanosaeta
harundinacea 6Ac]
Length = 258
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 33/176 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D+FYR+A+ GY ARSAFKL QI ++++LI+ G +VLDLG APG WLQVA + +G
Sbjct: 7 DYFYRKAKAEGYRARSAFKLQQINQRFRLIRRGDAVLDLGAAPGGWLQVAKEI-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCPSV 125
G VVG+D+ ++ D V T+ AD+ + + V AL K V++ D P++
Sbjct: 62 GRVVGVDLLAIE----PIDG-VTTIKADITAPETLELIVEALGGKA---DVVICDAAPNL 113
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
SG T D A S++L A+ +A VLKPGG+ ++K+ +
Sbjct: 114 SGNWTLDHARSIDLSRSALRVA------------------ESVLKPGGNFLVKVFQ 151
>gi|317154308|ref|YP_004122356.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
aespoeensis Aspo-2]
gi|316944559|gb|ADU63610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
aespoeensis Aspo-2]
Length = 199
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 25/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +++ A++ Y ARS +KL ++ K++ L K G +VLDLG APG+W Q A + +GP
Sbjct: 6 DKYFKRAKKENYAARSVYKLKEMDKRFGLFKKGQTVLDLGAAPGSWTQYAGERVGP---E 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ +D++ K A V + ADV + + A+ P F +++SDM P +G
Sbjct: 63 GHVLAVDIQDTKHT---FAANVTFLQADVFSDSPELLAAMEP-LAPFDLVISDMAPKTTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
I D A S+EL RA ++A + LK GGH +K+ ES + +
Sbjct: 119 IKFADQANSLELCERAFEVA------------------AKRLKRGGHFAVKIFESGETK 159
>gi|409722538|ref|ZP_11269984.1| 23S rRNA methyltransferase J [Halococcus hamelinensis 100A6]
gi|448722128|ref|ZP_21704667.1| 23S rRNA methyltransferase J [Halococcus hamelinensis 100A6]
gi|445790119|gb|EMA40789.1| 23S rRNA methyltransferase J [Halococcus hamelinensis 100A6]
Length = 251
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 98/185 (52%), Gaps = 34/185 (18%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +A++ GY +RSA+KL Q+ + L G +V+DLG APG WLQVA +
Sbjct: 1 MSG---RDEYYNKAKQQGYRSRSAYKLQQLDETADLFDDGDTVIDLGAAPGGWLQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-VILS 119
+G G VVG+D + ++ SL V+TV D L V+A ++ G + V+LS
Sbjct: 58 VGT----GRVVGVD--RQRIDSLDG---VETVRGD---LTDEDVQAYLAERVGEADVVLS 105
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
DM P+++G D A SV L +A D+AL VL PGG V K+
Sbjct: 106 DMAPNMTGEYDLDHARSVYLARQAFDVAL------------------DVLAPGGDFVAKV 147
Query: 180 LESQD 184
+ +D
Sbjct: 148 FDGRD 152
>gi|374298394|ref|YP_005050033.1| ribosomal RNA large subunit methyltransferase E [Desulfovibrio
africanus str. Walvis Bay]
gi|332551330|gb|EGJ48374.1| Ribosomal RNA large subunit methyltransferase E [Desulfovibrio
africanus str. Walvis Bay]
Length = 208
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 25/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ Y ARS +KL +I K++ +++PG VLDLG APG+W A + +G G
Sbjct: 6 DHYFKQAKKDNYPARSVYKLQEINKRFGILRPGQKVLDLGAAPGSWTLFAAKVVG---QG 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++ S V+ + DV P+ +V+A + F V++SDM P SG
Sbjct: 63 GKVLGVDLQST---STDFPDNVRFLVGDVFEPPA-EVQAAMEELAPFDVVVSDMAPKTSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
I +D A S +L +RA+++A L GG+ V K+ E D +
Sbjct: 119 IIFRDQAFSFDLCVRALEVA------------------DKYLAKGGNFVAKIFEGPDVR 159
>gi|389845667|ref|YP_006347906.1| ribosomal RNA large subunit methyltransferase J [Haloferax
mediterranei ATCC 33500]
gi|448616714|ref|ZP_21665424.1| 23S rRNA methyltransferase J [Haloferax mediterranei ATCC 33500]
gi|388242973|gb|AFK17919.1| ribosomal RNA large subunit methyltransferase J [Haloferax
mediterranei ATCC 33500]
gi|445751369|gb|EMA02806.1| 23S rRNA methyltransferase J [Haloferax mediterranei ATCC 33500]
Length = 257
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 94/177 (53%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ + L PG++V+DLG APG WLQVA + +G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDEDAGLFGPGNTVVDLGAAPGGWLQVASEKVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ H ++T+ D+ + + + G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIRDLDRHN---IETIRGDMTEDETKEQLTDIIGEAGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A ++A +L GG +K+ + QD
Sbjct: 119 EYSLDHARSIYLARQAFEVA------------------QELLATGGDFAVKVFDGQD 157
>gi|261403094|ref|YP_003247318.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
vulcanius M7]
gi|261370087|gb|ACX72836.1| ribosomal RNA large subunit methyltransferase J [Methanocaldococcus
vulcanius M7]
Length = 248
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 92/142 (64%), Gaps = 8/142 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y+ A++L Y +R++FKL+Q+ +++ +IKP +LDLGCAPG W+QVA + +G +
Sbjct: 15 DFYYKLAKKLQYRSRASFKLMQLNEKFNVIKPRKIILDLGCAPGGWMQVAREIVG---DD 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSP-KQKGFSVILSDMCPSV 125
G V+G+D++ VK P + + V + D + + N++R L P ++K V++SD P++
Sbjct: 72 GFVIGVDLQPVK-PFGYDN--VVAIKGDFTSEETLNKIRELIPNEEKKVDVVISDASPNI 128
Query: 126 SGITTKDAALSVELGMRAVDLA 147
SG D A S++L A+ +A
Sbjct: 129 SGYWDVDHARSIDLVTTALQIA 150
>gi|448732348|ref|ZP_21714629.1| 23S rRNA methyltransferase J [Halococcus salifodinae DSM 8989]
gi|445804921|gb|EMA55151.1| 23S rRNA methyltransferase J [Halococcus salifodinae DSM 8989]
Length = 251
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 98/184 (53%), Gaps = 32/184 (17%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +A++ GY +RSA+KL QI LI P +V+DLG APG WLQVA +
Sbjct: 1 MSG---RDEYYNKAKQQGYRSRSAYKLQQIDDTADLIAPSDTVIDLGAAPGGWLQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+GG VVG+D ++++ S+ V+TV D+ S Q ++ + ++LSD
Sbjct: 58 A----DGGRVVGVDRQRIE--SIDG---VETVRGDLTE-ESTQAE-IAERVGKADLVLSD 106
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G D A S+ L +A+D+A +L PGG LV+K
Sbjct: 107 MAPNMTGEYELDHARSIHLARQALDVA------------------RTILTPGGDLVVKAF 148
Query: 181 ESQD 184
+ +D
Sbjct: 149 DGRD 152
>gi|345006507|ref|YP_004809360.1| ribosomal RNA large subunit methyltransferase E [halophilic
archaeon DL31]
gi|344322133|gb|AEN06987.1| Ribosomal RNA large subunit methyltransferase E [halophilic
archaeon DL31]
Length = 260
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 97/185 (52%), Gaps = 28/185 (15%)
Query: 4 VGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGP 63
+G+ D +Y A++ GY ARSA+KL Q+ ++ L + G +V+DLG APG WLQVA + +GP
Sbjct: 1 MGSKDDYYNRAKQQGYRARSAYKLKQLDEEATLFEEGDTVVDLGAAPGGWLQVAAEKVGP 60
Query: 64 LDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVR---ALSPKQKGFSVILS 119
G VVG+D + + H +V+T+ D+ + +++R + ++ V++S
Sbjct: 61 Q---GRVVGVDFQSIDDLEPH---QVKTMRGDMTEEQTRDRLRRELGVEDDERVVDVVIS 114
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
DM P+++G D A SV L A + AL LKP V+K+
Sbjct: 115 DMAPNMTGEYELDHARSVHLARTAFETAL------------------KYLKPDSDFVVKV 156
Query: 180 LESQD 184
+ +D
Sbjct: 157 FQGRD 161
>gi|448303969|ref|ZP_21493915.1| 23S rRNA methyltransferase J [Natronorubrum sulfidifaciens JCM
14089]
gi|445592596|gb|ELY46783.1| 23S rRNA methyltransferase J [Natronorubrum sulfidifaciens JCM
14089]
Length = 261
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 23/178 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY +R+A+KL Q+ +I G++V+DLG APG WLQVA + +GP
Sbjct: 5 DQYYNKSKQEGYRSRAAYKLKQLDNLENVISGGNTVVDLGAAPGGWLQVAAEKVGPP--- 61
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
GSV+G+D++++K + D RV+T+ D+ + + R + ++SDM P++S
Sbjct: 62 GSVIGVDLQRIKDLEDATLDERVETLRGDMTEDKTRE-RVIDAAGGPVDAVVSDMAPNMS 120
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A S+ L +A + AL +L GG+ V+K+ E D
Sbjct: 121 GEYSLDQARSLYLARQAFETAL------------------ELLDTGGNFVVKVFEGPD 160
>gi|399576109|ref|ZP_10769866.1| ribosomal RNA large subunit methyltransferase J [Halogranum
salarium B-1]
gi|399238820|gb|EJN59747.1| ribosomal RNA large subunit methyltransferase J [Halogranum
salarium B-1]
Length = 258
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY ARSA+KL Q+ + L+ PG +DLG APG WLQVA + +G
Sbjct: 5 DEYYNRAKQQGYRARSAYKLKQLNESSSLLSPGDVAVDLGAAPGGWLQVASEEVG---EH 61
Query: 68 GSVVGIDVKKVKVPSLHCDAR-VQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+G+D++++K +AR V T+ D+ + + + G V+LSDM P+++
Sbjct: 62 GKVIGVDLQRIK----ELEARNVTTIRGDMTEEDTKEQLFDAIGDDGADVVLSDMAPNMT 117
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G D A SV L +A ++AL +L GG LV+K+ + D
Sbjct: 118 GEYNLDHARSVYLARQAFEVAL------------------ELLDSGGDLVVKVFDGPD 157
>gi|330506929|ref|YP_004383357.1| ribosomal RNA large subunit methyltransferase J [Methanosaeta
concilii GP6]
gi|328927737|gb|AEB67539.1| ribosomal RNA large subunit methyltransferase J [Methanosaeta
concilii GP6]
Length = 256
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 101/177 (57%), Gaps = 35/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR+A+ GY ARSA+KLLQI +++ +IK G SV+DLG APG WLQVA Q L +G
Sbjct: 7 DHYYRKAKEEGYRARSAYKLLQINEKFHVIKKGDSVVDLGAAPGGWLQVA-QKL----SG 61
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPS-NQVR-ALSPKQKGFSVILSDMCPS 124
G +VG+D++ + +P V T AD+ L + +QV+ AL V++ D P+
Sbjct: 62 GKIVGVDLEGITPIPG------VVTFRADITALSTVDQVKDALGGDA---DVVICDAAPN 112
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+SG +D A+S++L A+++A +L+P G+ V+K+ +
Sbjct: 113 LSGAWDRDHAISIDLARSALEMA------------------KKLLRPRGNFVVKVFQ 151
>gi|448716251|ref|ZP_21702494.1| 23S rRNA methyltransferase J [Halobiforma nitratireducens JCM
10879]
gi|445787077|gb|EMA37827.1| 23S rRNA methyltransferase J [Halobiforma nitratireducens JCM
10879]
Length = 258
Score = 96.7 bits (239), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 95/177 (53%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WLQVA + +GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDELENVIDRGDTVVDLGAAPGGWLQVAAERVGP---D 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D++++ + H + V+T+ D+ + + R + ++SDM P++SG
Sbjct: 62 GTVIGVDLQRIDDLADHDN--VETIRGDMTEERTRE-RVVDAADGTVDAVVSDMAPNMSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + AL +L GG V+K+ E D
Sbjct: 119 EYSLDQARSLHLARQAFETAL------------------ELLDTGGDFVVKVFEGPD 157
>gi|376295814|ref|YP_005167044.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
desulfuricans ND132]
gi|323458375|gb|EGB14240.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
desulfuricans ND132]
Length = 199
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +++ A++ Y ARS +KL ++ K++++ K G +VLDLG APG+W Q A + +GP
Sbjct: 6 DKYFKRAKKENYAARSVYKLKEMDKRFQIFKKGQTVLDLGAAPGSWSQFAGERVGP---E 62
Query: 68 GSVVGIDVKKVKVPSLHCDA-RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+G+D++ K H A + + ADV + + A+ P F VI+SDM P +
Sbjct: 63 GHVLGVDLQTTK----HSFAGNITFLQADVFSDSPELLAAVEPLAP-FDVIISDMAPKTT 117
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
GI D A S+EL RA ++AL LK GG +K+ E
Sbjct: 118 GIKFADQANSLELCERAFEVAL------------------KYLKKGGSFAVKIFE 154
>gi|448560567|ref|ZP_21634015.1| 23S rRNA methyltransferase J [Haloferax prahovense DSM 18310]
gi|445722217|gb|ELZ73880.1| 23S rRNA methyltransferase J [Haloferax prahovense DSM 18310]
Length = 257
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ L PG++V+DLG APG WLQVA +++G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDGDAGLFGPGNTVVDLGAAPGGWLQVASEAVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ + D VQT+ D+ + + ++G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIR--GIDRD-NVQTIRGDMTEDETKEELTAVIGERGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A SV L +A ++A +L GG L +K+ + D
Sbjct: 119 EYSLDHARSVYLARQAFEVA------------------QELLATGGDLAVKVFDGPD 157
>gi|448543915|ref|ZP_21625376.1| 23S rRNA methyltransferase J [Haloferax sp. ATCC BAA-646]
gi|448551075|ref|ZP_21629217.1| 23S rRNA methyltransferase J [Haloferax sp. ATCC BAA-645]
gi|448558550|ref|ZP_21633107.1| 23S rRNA methyltransferase J [Haloferax sp. ATCC BAA-644]
gi|445706057|gb|ELZ57944.1| 23S rRNA methyltransferase J [Haloferax sp. ATCC BAA-646]
gi|445710631|gb|ELZ62429.1| 23S rRNA methyltransferase J [Haloferax sp. ATCC BAA-645]
gi|445712302|gb|ELZ64084.1| 23S rRNA methyltransferase J [Haloferax sp. ATCC BAA-644]
Length = 259
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 86/140 (61%), Gaps = 6/140 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ L PG++V+DLG APG WLQVA +++G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDGDAGLFGPGNTVVDLGAAPGGWLQVASEAVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ + D VQT+ D+ + + ++G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIR--GIDRD-NVQTIRGDMTEDETKEELTAVIGERGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLA 147
+ D A SV L +A ++A
Sbjct: 119 EYSLDHARSVYLARQAFEVA 138
>gi|448582734|ref|ZP_21646238.1| 23S rRNA methyltransferase J [Haloferax gibbonsii ATCC 33959]
gi|445732382|gb|ELZ83965.1| 23S rRNA methyltransferase J [Haloferax gibbonsii ATCC 33959]
Length = 257
Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 86/140 (61%), Gaps = 6/140 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ L PG++V+DLG APG WLQVA +++G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDGDAGLFGPGNTVVDLGAAPGGWLQVASEAVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ + D VQT+ D+ + + ++G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIR--GIDRD-NVQTIRGDMTEDETKEELTAVIGERGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLA 147
+ D A SV L +A ++A
Sbjct: 119 EYSLDHARSVYLARQAFEVA 138
>gi|435849150|ref|YP_007311400.1| 23S rRNA methylase [Natronococcus occultus SP4]
gi|433675418|gb|AGB39610.1| 23S rRNA methylase [Natronococcus occultus SP4]
Length = 261
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ +I G +V+DLG APG WL+VA + +GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDDLENVISGGDTVVDLGAAPGGWLEVAAERVGPQ--- 61
Query: 68 GSVVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VVG+D++++K L RV+T+ D+ + R V++SDM P++S
Sbjct: 62 GRVVGVDLQRIKDLELPGGTDRVETIRGDMTE-DRTRDRVTDAADGEVDVVISDMAPNMS 120
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A S+ L +A + AL +L GG+LV+K+ E D
Sbjct: 121 GEYSLDQARSLHLARQAFETAL------------------ELLGSGGNLVVKVFEGPD 160
>gi|433423601|ref|ZP_20406256.1| 23S rRNA methyltransferase J [Haloferax sp. BAB2207]
gi|448573557|ref|ZP_21641040.1| 23S rRNA methyltransferase J [Haloferax lucentense DSM 14919]
gi|448597704|ref|ZP_21654629.1| 23S rRNA methyltransferase J [Haloferax alexandrinus JCM 10717]
gi|432198328|gb|ELK54624.1| 23S rRNA methyltransferase J [Haloferax sp. BAB2207]
gi|445718463|gb|ELZ70153.1| 23S rRNA methyltransferase J [Haloferax lucentense DSM 14919]
gi|445739165|gb|ELZ90674.1| 23S rRNA methyltransferase J [Haloferax alexandrinus JCM 10717]
Length = 259
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ L PG++V+DLG APG WLQVA + +G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDGDAGLFGPGNTVVDLGAAPGGWLQVASEEVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ + D VQT+ D+ + + ++G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIR--GIDRD-NVQTIRGDMTEDETKEELTAVIGERGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLA 147
+ D A SV L +A ++A
Sbjct: 119 EYSLDHARSVYLARQAFEVA 138
>gi|20090152|ref|NP_616227.1| 23S RNA methyltransferase J [Methanosarcina acetivorans C2A]
gi|74532956|sp|Q8TR92.1|RLME_METAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|19915136|gb|AAM04707.1| 23S RNA methyltransferase J [Methanosarcina acetivorans C2A]
Length = 272
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A+ GY +R++FKL QI +++ +IK G SV+DLG APG WLQVA Q +G
Sbjct: 7 DYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQL-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSN---QVRALSPKQKGFSVILSDMCPS 124
G V+G+D++++ P V+T+ D IN S +RA+ +KG V+L D P+
Sbjct: 62 GKVLGVDLQRI-API----EGVETIQGD-INADSTIKKIIRAVG--EKGADVVLCDAAPN 113
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+SG + D A S+EL A++ A +LKP G+ V+K+ +
Sbjct: 114 LSGNWSYDHARSIELTTSALECA------------------KKILKPKGNFVVKVFQ 152
>gi|448622400|ref|ZP_21669094.1| 23S rRNA methyltransferase J [Haloferax denitrificans ATCC 35960]
gi|445754482|gb|EMA05887.1| 23S rRNA methyltransferase J [Haloferax denitrificans ATCC 35960]
Length = 259
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ L PG++V+DLG APG WLQVA + +G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDGDAGLFGPGNTVVDLGAAPGGWLQVASEEVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ + D VQT+ D+ + + ++G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIR--GIDRD-NVQTIRGDMTEDETKEELTAVIGERGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLA 147
+ D A SV L +A ++A
Sbjct: 119 EYSLDHARSVYLARQAFEVA 138
>gi|21228390|ref|NP_634312.1| methyltransferase [Methanosarcina mazei Go1]
gi|74523704|sp|Q8PUP4.1|RLME_METMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|20906862|gb|AAM31984.1| methyltransferase [Methanosarcina mazei Go1]
Length = 268
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 36/178 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A+ GY +R++FKL QI +++ +IK G SV+DLG APG WLQVA Q +G
Sbjct: 7 DYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQL-----SG 61
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+G+D++++ V ++ D ++ +I + +KG V+L D P
Sbjct: 62 GKVLGVDLQRIDPIEGVETIQGDINAESTIKKIIKIVG---------EKGADVVLCDAAP 112
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG + D A S+EL A++ A +LKP G+ +K+ +
Sbjct: 113 NLSGNWSYDHARSIELATSALECA------------------KKILKPKGNFAVKVFQ 152
>gi|448606606|ref|ZP_21659032.1| 23S rRNA methyltransferase J [Haloferax sulfurifontis ATCC BAA-897]
gi|445738814|gb|ELZ90326.1| 23S rRNA methyltransferase J [Haloferax sulfurifontis ATCC BAA-897]
Length = 259
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ L PG++V+DLG APG WLQVA + +G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDGDAGLFGPGNTVVDLGAAPGGWLQVASEKVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ + D VQT+ D+ + + ++G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIR--GIDRD-NVQTIRGDMTEDETKEELTAVIGERGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLA 147
+ D A SV L +A ++A
Sbjct: 119 EYSLDHARSVYLARQAFEVA 138
>gi|407014998|gb|EKE28945.1| hypothetical protein ACD_2C00263G0011 [uncultured bacterium (gcode
4)]
Length = 206
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 88/143 (61%), Gaps = 12/143 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ EA+RLGY ARSAFKLL++Q+++ +IKPG SVLD+ APG++LQV + + N
Sbjct: 15 DRYFMEAKRLGYRARSAFKLLEVQEKFNIIKPGFSVLDVWAAPGSFLQVIYKIVW---ND 71
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQ--KGFSVILSDMCPS 124
+V ID++K++ +P + +++ ++++A+ + K F +I SD+ PS
Sbjct: 72 AKIVWIDIQKIEPLPYQNLTLIQESI------FEYDKLKAIFEEMQLKQFDLITSDIAPS 125
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
+G T D SVEL + VD A
Sbjct: 126 TTGQTWVDQYRSVELNLAIVDFA 148
>gi|11499633|ref|NP_070875.1| cell division protein FtsJ [Archaeoglobus fulgidus DSM 4304]
gi|9911012|sp|O28228.1|RLME_ARCFU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|2648490|gb|AAB89203.1| cell division protein (ftsJ) [Archaeoglobus fulgidus DSM 4304]
Length = 191
Score = 95.5 bits (236), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 35/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A++ GY +R+A+KLLQ+ + +KLI+ G VLDLG PG W QVA G
Sbjct: 6 DYYYWKAKKEGYRSRAAYKLLQMNRTFKLIREGDLVLDLGATPGGWSQVAALL------G 59
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILSDMCPSV 125
VV +D+ +K V + D I LP ++R +SP + V++SD P +
Sbjct: 60 ARVVAVDINPMKPLE-----NVTFIRGD-ITLPETLEKIREISP---DYDVVMSDASPKI 110
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
SG T D +R++DLA ++A VLKPGG+ V+K+ + ++
Sbjct: 111 SGKWTIDH-------LRSIDLARASFSIAKE-----------VLKPGGNFVVKVFQGEEI 152
Query: 186 Q 186
Q
Sbjct: 153 Q 153
>gi|433589491|ref|YP_007278987.1| 23S rRNA methylase [Natrinema pellirubrum DSM 15624]
gi|448335634|ref|ZP_21524774.1| 23S rRNA methyltransferase J [Natrinema pellirubrum DSM 15624]
gi|433304271|gb|AGB30083.1| 23S rRNA methylase [Natrinema pellirubrum DSM 15624]
gi|445616473|gb|ELY70098.1| 23S rRNA methyltransferase J [Natrinema pellirubrum DSM 15624]
Length = 257
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 24/179 (13%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WL+VA + +GP
Sbjct: 2 ARDHYYNKAKQEGYRSRAAYKLKQLDRLEDVIDRGDTVVDLGAAPGGWLEVAAEEVGPE- 60
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G V+G+D +++ + H + V+T+ D+ + + R + ++SDM P++
Sbjct: 61 --GQVIGVDFQRIDDFADHDN--VETLRGDMTEDKTRK-RVVDAADGTVDAVISDMAPNM 115
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
SG + D A S+ L +A + AL +L+ GG V+K+ E D
Sbjct: 116 SGEYSLDQARSLHLARQAFETAL------------------ELLEAGGDFVVKVFEGPD 156
>gi|284162072|ref|YP_003400695.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Archaeoglobus profundus
DSM 5631]
gi|284012069|gb|ADB58022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Archaeoglobus profundus
DSM 5631]
Length = 202
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 33/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A++LGY +R++FKL+Q+ + +KLIK G VLDLG +PG W QVA + G
Sbjct: 6 DYYYWQAKKLGYRSRASFKLIQMNRTFKLIKEGDWVLDLGASPGGWSQVAVEL------G 59
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
VV +D+ ++ + +H + D+ + + ++ + V+LSD P +S
Sbjct: 60 AKVVAVDINPMEPIEGVHF------IRGDITR--EETLEEIKSVRRYYDVVLSDASPKIS 111
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
G T D LS++L A +A VLK GG+ V+K+ + ++ Q
Sbjct: 112 GKWTIDHLLSIDLARSAFKIA------------------REVLKDGGNFVVKVFQGEEIQ 153
>gi|448730693|ref|ZP_21712998.1| 23S rRNA methyltransferase J [Halococcus saccharolyticus DSM 5350]
gi|445793134|gb|EMA43724.1| 23S rRNA methyltransferase J [Halococcus saccharolyticus DSM 5350]
Length = 251
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 98/185 (52%), Gaps = 34/185 (18%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +A++ GY +RSA+KL Q+ LI G +V+DLG APG WLQVA +
Sbjct: 1 MSG---RDEYYNKAKQQGYRSRSAYKLQQLDDTADLIASGDTVIDLGAAPGGWLQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRA-LSPKQKGFSVILS 119
+ G VVG+D + ++ S+ V+TV D L + +A L+ + ++LS
Sbjct: 58 T----DDGRVVGVD--RQRIESIDG---VETVRGD---LTEDDTQAELAERVGEADLVLS 105
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
DM P+++G D A SV L +A+D+A VL PGG LV+K+
Sbjct: 106 DMAPNMTGEYDLDHARSVHLARQALDVA------------------RTVLAPGGDLVVKV 147
Query: 180 LESQD 184
+ +D
Sbjct: 148 FDGRD 152
>gi|327400140|ref|YP_004340979.1| ribosomal RNA large subunit methyltransferase E [Archaeoglobus
veneficus SNP6]
gi|327315648|gb|AEA46264.1| Ribosomal RNA large subunit methyltransferase E [Archaeoglobus
veneficus SNP6]
Length = 209
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 96/180 (53%), Gaps = 33/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y EA++ GY +R+AFKLLQ+ K +KLIK GS VLDLG +PG W QVA + G
Sbjct: 12 DYYYWEAKKKGYRSRAAFKLLQMNKTFKLIKKGSKVLDLGASPGGWSQVAVEL------G 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
VV +D+ +P + V + D+ + +++A+S + + ++ D P ++
Sbjct: 66 AEVVAVDIN--PMPPIEG---VTFIQGDITKEETLEKIKAVS---REYDAVICDASPKIT 117
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
G + D +S++L A ++A VLKPGG+ V+K+ + ++ Q
Sbjct: 118 GHWSIDHLISMDLARAAFNIA------------------RQVLKPGGNFVVKMFQGEEIQ 159
>gi|448307981|ref|ZP_21497865.1| 23S rRNA methyltransferase J [Natronorubrum bangense JCM 10635]
gi|445594792|gb|ELY48934.1| 23S rRNA methyltransferase J [Natronorubrum bangense JCM 10635]
Length = 261
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 23/178 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY +R+A+KL Q+ +I G +V+DLG APG WLQVA + +GP
Sbjct: 5 DQYYNKSKQEGYRSRAAYKLKQLDDLENVISGGDTVVDLGAAPGGWLQVAAEKVGPP--- 61
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
GSV+G+D++++K + + RV+T+ D+ + + R + ++SDM P++S
Sbjct: 62 GSVIGVDLQRIKDLEDSTLNDRVETLRGDMTEDKTRE-RVIDAAGGPVDAVVSDMAPNMS 120
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A S+ L +A + AL +L GG+ V+K+ E D
Sbjct: 121 GEYSLDQARSLYLARQAFETAL------------------EILDTGGNFVVKIFEGPD 160
>gi|448388520|ref|ZP_21565295.1| 23S rRNA methyltransferase J [Haloterrigena salina JCM 13891]
gi|445670275|gb|ELZ22878.1| 23S rRNA methyltransferase J [Haloterrigena salina JCM 13891]
Length = 260
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY +R+A+KL Q+ +I +V+DLG APG WLQVA + +GP
Sbjct: 5 DDYYNRAKQQGYRSRAAYKLKQLDDLENVISGHDTVVDLGAAPGGWLQVAAEKVGPQ--- 61
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G+V+G+D++++K + + RV+T+ D+ + R V++SDM P++S
Sbjct: 62 GTVIGVDLQRIKDLEDETLNERVETIRGDMTEEKTRD-RVTDAAGGSVDVVVSDMAPNMS 120
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A S+ L +A + AL +L+ GG+ V+K+ E D
Sbjct: 121 GEYSLDQARSLYLARQAFETAL------------------ELLESGGNFVVKVFEGPD 160
>gi|301060192|ref|ZP_07201059.1| ribosomal RNA large subunit methyltransferase J [delta
proteobacterium NaphS2]
gi|300445704|gb|EFK09602.1| ribosomal RNA large subunit methyltransferase J [delta
proteobacterium NaphS2]
Length = 197
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 29/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A++ ++ARS +KL +I +++KLI+ +VLDLGC PG+W Q +G + G
Sbjct: 8 DHYTEKARKEKWLARSVYKLQEIDRKFKLIRRNDTVLDLGCFPGSWSQYV---IGKVGKG 64
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRA-LSPKQKGFSVILSDMCPSVS 126
G+VVGID++K P + AD+ + Q+ A + P+ +++LSD+ P +
Sbjct: 65 GNVVGIDLQK---PKAFNPPNFTYMKADIETVDPEQLSARIEPR----NLVLSDLAPPTT 117
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
GI DA+ S+ L RA ++A +LKP GH V K+ E +
Sbjct: 118 GIRDTDASRSLFLAERAAEIA------------------RMLLKPKGHFVCKIFEDE 156
>gi|149919181|ref|ZP_01907664.1| cell division protein FtsJ [Plesiocystis pacifica SIR-1]
gi|149819895|gb|EDM79317.1| cell division protein FtsJ [Plesiocystis pacifica SIR-1]
Length = 209
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 11 YREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSV 70
Y A+R + R+ +KL +I K+++LIKPG+ VLDLGC PG+WLQ A + G ++
Sbjct: 12 YLRAKRENFAGRAIYKLEEIDKRFRLIKPGARVLDLGCWPGSWLQYAVKRAG---TDATL 68
Query: 71 VGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITT 130
VG+D+K V+ L + V+T DV L ++ + + F V+LSDM P+ +G
Sbjct: 69 VGVDLKAVE---LALPSNVKTFVGDVNKLKLDK---MVERFGRFDVVLSDMAPNTTGNKD 122
Query: 131 KDAALSVELGMRAVDLALG 149
D +S +L +RA+D+A G
Sbjct: 123 FDIPVSEDLFLRALDIATG 141
>gi|73670706|ref|YP_306721.1| 23S RNA methyltransferase J [Methanosarcina barkeri str. Fusaro]
gi|121722047|sp|Q466Q1.1|RLME_METBF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|72397868|gb|AAZ72141.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanosarcina barkeri
str. Fusaro]
Length = 263
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 96/174 (55%), Gaps = 28/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++YR+A+ GY +R++FKL QI +++ +I G SV+DLG APG WLQVA + +G
Sbjct: 7 DYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQVAKEL-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++++ VP V+T+ ++ + Q + KG V+L D P++SG
Sbjct: 62 GKVLGVDLQRI-VPI----EGVETIQGNINADSTIQKIIKTVGAKGADVVLCDAAPNLSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ D A S+EL A++ A +LKP G+ V+K+ +
Sbjct: 117 NWSYDHARSIELATSALECA------------------KKILKPKGNFVVKVFQ 152
>gi|284163460|ref|YP_003401739.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haloterrigena turkmenica
DSM 5511]
gi|284013115|gb|ADB59066.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haloterrigena turkmenica
DSM 5511]
Length = 261
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY +R+A+KL Q+ +I +V+DLG APG WLQVA + +GP
Sbjct: 5 DDYYNRAKQQGYRSRAAYKLKQLDDLENVISGHDTVVDLGAAPGGWLQVAAEKVGPQ--- 61
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G+V+G+D++++K + + RV+T+ D+ + R V++SDM P++S
Sbjct: 62 GTVIGVDLQRIKDLEDETLNERVETIRGDMTEEKTRD-RVTDAAGGSVDVVVSDMAPNMS 120
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A S+ L +A + AL +L+ GG+ V+K+ E D
Sbjct: 121 GEYSLDQARSLYLARQAFETAL------------------ELLESGGNFVVKVFEGPD 160
>gi|308273424|emb|CBX30026.1| Ribosomal RNA large subunit methyltransferase J [uncultured
Desulfobacterium sp.]
Length = 208
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 85/142 (59%), Gaps = 13/142 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A++ Y ARS +KL ++Q +YKLIK G VLDLGC PG+W A +G
Sbjct: 21 DHYSRLAKKENYPARSVYKLQELQSRYKLIKKGGRVLDLGCYPGSWTIYASDLVG---QK 77
Query: 68 GSVVGIDVKK--VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G+VVGID+KK +K+PS D++N+ ++ + ++ K F +++SDM P+
Sbjct: 78 GTVVGIDLKKLDIKIPS-----NALVYQCDILNIDNSMLLSIGNK---FDIVISDMAPAT 129
Query: 126 SGITTKDAALSVELGMRAVDLA 147
+G + DA S +L + A+D+A
Sbjct: 130 TGNKSVDAVRSYDLCLAALDVA 151
>gi|297569182|ref|YP_003690526.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfurivibrio
alkaliphilus AHT2]
gi|296925097|gb|ADH85907.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfurivibrio
alkaliphilus AHT2]
Length = 197
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 26/180 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF++R+A++ GY ARS +KL + Q+++KL++PG VLDLGC PG+W A + +G
Sbjct: 6 DFYFRKARKEGYPARSVYKLEEAQQKFKLLRPGDKVLDLGCQPGSWSIYAARVVG---RQ 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVS 126
G VVG+D+ + + A V D+ +VR + + + V++SDM P +
Sbjct: 63 GLVVGVDITAGPIKT-RGGAPFHFVLGDITRESVQEKVRGICSR---YRVLISDMAPRTT 118
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
G D S+ L ++LA + L+PGGHL K+ E +D Q
Sbjct: 119 GNRWADQQQSLRLARTVLELA------------------ANWLQPGGHLYCKVFEGEDFQ 160
>gi|292654359|ref|YP_003534256.1| ribosomal RNA large subunit methyltransferase J [Haloferax volcanii
DS2]
gi|448293905|ref|ZP_21484007.1| 23S rRNA methyltransferase J [Haloferax volcanii DS2]
gi|291372926|gb|ADE05153.1| ribosomal RNA large subunit methyltransferase J [Haloferax volcanii
DS2]
gi|445569298|gb|ELY23872.1| 23S rRNA methyltransferase J [Haloferax volcanii DS2]
Length = 259
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 6/140 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY ARSA+KL Q+ L PG++V+DLG APG WLQV + +G +
Sbjct: 5 DHYYNKAKQEGYRARSAYKLKQLDGDAGLFGPGNTVVDLGAAPGGWLQVVSEEVG---DH 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+++++ + D VQT+ D+ + + ++G ++SDM P+++G
Sbjct: 62 GKVVGVDLQRIR--GIDRD-NVQTIRGDMTEDETKEELTAVIGERGADAVVSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLA 147
+ D A SV L +A ++A
Sbjct: 119 EYSLDHARSVYLARQAFEVA 138
>gi|383620172|ref|ZP_09946578.1| ribosomal RNA large subunit methyltransferase E [Halobiforma
lacisalsi AJ5]
gi|448696135|ref|ZP_21697696.1| 23S rRNA methyltransferase J [Halobiforma lacisalsi AJ5]
gi|445783823|gb|EMA34647.1| 23S rRNA methyltransferase J [Halobiforma lacisalsi AJ5]
Length = 258
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WLQVA +++GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDELEGVIDRGDTVVDLGAAPGGWLQVAAETVGPE--- 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++++ L V+T+ D+ + + R + ++SDM P++SG
Sbjct: 62 GKVIGVDLQRID--DLEDHDNVETIRGDMTEDRTRE-RVIDAAGGEVDAVVSDMAPNMSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + AL +L GG V+K+ E D
Sbjct: 119 EYSLDQARSLHLARQAFETAL------------------ELLDAGGDFVVKVFEGPD 157
>gi|397772400|ref|YP_006539946.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Natrinema sp. J7-2]
gi|397681493|gb|AFO55870.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Natrinema sp. J7-2]
Length = 257
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WL+VA + +GP
Sbjct: 4 DHYYNKAKQEGYRSRAAYKLKQLDRLENVIDRGDTVVDLGAAPGGWLEVAAEEVGPE--- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D +++ H + V+T+ D+ + + R + ++SDM P++SG
Sbjct: 61 GNVIGVDFQRIDDFEDHDN--VETLRGDMTEDKTRK-RVVDAADGSVDAVISDMAPNMSG 117
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + A+ +L GG V+K+ E D
Sbjct: 118 EYSLDQARSLHLARQAFETAV------------------ELLDSGGDFVVKVFEGPD 156
>gi|448342210|ref|ZP_21531162.1| 23S rRNA methyltransferase J [Natrinema gari JCM 14663]
gi|445626201|gb|ELY79550.1| 23S rRNA methyltransferase J [Natrinema gari JCM 14663]
Length = 257
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WL+VA + +GP
Sbjct: 4 DHYYNKAKQEGYRSRAAYKLKQLDRLENVIDRGDTVVDLGAAPGGWLEVAAEEVGPE--- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D +++ H + V+T+ D+ + + R + ++SDM P++SG
Sbjct: 61 GNVIGVDFQRIDDFEDHDN--VETLRGDMTEDKTRK-RVVDAADGSVDAVISDMAPNMSG 117
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + A +L GG V+K+ E D
Sbjct: 118 EYSLDQARSLHLARQAFETA------------------DELLDSGGDFVVKVFEGPD 156
>gi|215765591|dbj|BAG87288.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 136
Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 67/98 (68%), Gaps = 10/98 (10%)
Query: 97 INLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGP-----A 151
+ L Q RA+SP+++GFSVILSDMCP VSGITTKDAA+S ELGMRA+ LA+G +
Sbjct: 1 MALMKQQARAMSPQERGFSVILSDMCPVVSGITTKDAAISCELGMRALSLAVGKMKAKDS 60
Query: 152 ALASPVNNSDSST-----DSGVLKPGGHLVIKLLESQD 184
+ + SST + G+L+ GG LVIK LE++D
Sbjct: 61 DCIAILEKFQSSTEPDPDEDGILRRGGSLVIKFLENED 98
>gi|448346741|ref|ZP_21535623.1| 23S rRNA methyltransferase J [Natrinema altunense JCM 12890]
gi|445632003|gb|ELY85226.1| 23S rRNA methyltransferase J [Natrinema altunense JCM 12890]
Length = 257
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WL+VA + +GP
Sbjct: 4 DHYYNKAKQEGYRSRAAYKLKQLDQLENVIDRGDTVVDLGAAPGGWLEVAAEEVGPE--- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D +++ + H V+T+ D+ + + R + ++SDM P++SG
Sbjct: 61 GNVIGVDFQRIDDFADHD--TVETLRGDMTEDKTRK-RVVDAADGSVDAVISDMAPNMSG 117
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + AL +L GG V+K+ E D
Sbjct: 118 EYSLDQARSLHLARQAFETAL------------------ELLDSGGDFVVKVFEGPD 156
>gi|448381497|ref|ZP_21561617.1| 23S rRNA methyltransferase J [Haloterrigena thermotolerans DSM
11522]
gi|445662984|gb|ELZ15744.1| 23S rRNA methyltransferase J [Haloterrigena thermotolerans DSM
11522]
Length = 257
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 24/179 (13%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WL+VA + +GP
Sbjct: 2 ARDHYYNKAKQEGYRSRAAYKLKQLDRLEDVIDRGDTVVDLGAAPGGWLEVAAEEVGPE- 60
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G V+G+D +++ + H + V+T+ D+ + + R + ++SDM P++
Sbjct: 61 --GKVIGVDFQRIDDFADHDN--VETLRGDMTEEKTRK-RVVDAADGTVDAVISDMAPNM 115
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
SG + D A S+ L +A + A +L+ GG V+K+ E D
Sbjct: 116 SGEYSLDQARSLHLARQAFETAC------------------ELLEAGGDFVVKVFEGPD 156
>gi|147919157|ref|YP_687110.1| 23S rRNA methyltransferase J [Methanocella arvoryzae MRE50]
gi|121685265|sp|Q0W1F9.1|RLME_UNCMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|110622506|emb|CAJ37784.1| 23S rRNA methyltransferase J [Methanocella arvoryzae MRE50]
Length = 256
Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 29/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A+++GY +R++FKL I K++ +IK G +V+DLG APG WLQVA + L+ G
Sbjct: 7 DHYYNKAKQMGYRSRASFKLQFINKKHHIIKKGDTVVDLGAAPGGWLQVAKE----LNGG 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+++++ V+T+ D+ + P Q R + ++ D P++SG
Sbjct: 63 GKVIGVDLQRIEPIE-----GVETIKGDMTS-PETQARIFEIVDE-VDTVICDAAPNLSG 115
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D A S++L A+D+A + +LK GG+ V+K+ +
Sbjct: 116 NWALDHARSIDLATVALDVA------------------TKLLKKGGNFVVKVFQ 151
>gi|448330278|ref|ZP_21519561.1| 23S rRNA methyltransferase J [Natrinema versiforme JCM 10478]
gi|445611957|gb|ELY65698.1| 23S rRNA methyltransferase J [Natrinema versiforme JCM 10478]
Length = 258
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WL+VA + +GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDQLEDVIDRGDTVVDLGAAPGGWLEVAAEEVGPE--- 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D +++K H + V+T+ D+ + R + V++SDM P++SG
Sbjct: 62 GNVIGVDFQRIKEFDDHDN--VETLRGDMTEEKTRD-RVIDAAGGPVDVVISDMAPNMSG 118
Query: 128 ITTKDAALSVELGMRAVDLAL 148
+ D A S+ L +A + A+
Sbjct: 119 EYSLDQARSLHLARQAFETAI 139
>gi|337287703|ref|YP_004627175.1| Ribosomal RNA large subunit methyltransferase E
[Thermodesulfobacterium sp. OPB45]
gi|334901441|gb|AEH22247.1| Ribosomal RNA large subunit methyltransferase E
[Thermodesulfobacterium geofontis OPF15]
Length = 202
Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 31/174 (17%)
Query: 12 REAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVV 71
++A+ GY ARS FKL++IQ++YK+I+ G VLDLG +PG+W + A +G G V+
Sbjct: 12 KKAKEKGYPARSVFKLMEIQEKYKIIQKGDIVLDLGASPGSWSKYALSIVG---EKGKVI 68
Query: 72 GIDVKKVKV--PSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGIT 129
GID+ +K+ P+ + + DV L N + L ++ V+LSDM P +G
Sbjct: 69 GIDILPIKISHPNFYF------LQKDVFELEENDFKNLGIEK--VDVLLSDMAPKTTGDK 120
Query: 130 TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
D SV L +A+++A LK GG V+K+ E +
Sbjct: 121 FGDHVRSVRLAEKALEIA------------------KNYLKEGGSFVVKVFEGE 156
>gi|42522939|ref|NP_968319.1| cell division protein FtsJ [Bdellovibrio bacteriovorus HD100]
gi|81617714|sp|Q6MN40.1|RLME_BDEBA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|39574135|emb|CAE79312.1| cell division protein FtsJ [Bdellovibrio bacteriovorus HD100]
Length = 196
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++R+A++ + ARS FKL +I +++K+ KPG VLDLG +PG+W Q A + G
Sbjct: 7 DHYFRKAKQENFAARSVFKLEEIDQKFKMFKPGQVVLDLGASPGSWSQYASKMAG---EK 63
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+ V V + + AD+ +L + F +++SDM P +G
Sbjct: 64 GRVLGVDLSPVTVKLKNA----VFIQADLRDLNLEDIFKEHGFVPPFDIVMSDMAPKTTG 119
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
I D A S+EL A+D+A LK GH V KL S D
Sbjct: 120 IRMTDQARSMELCELALDVA------------------RRFLKKDGHFVCKLFHSDD 158
>gi|322368172|ref|ZP_08042741.1| ribosomal RNA large subunit methyltransferase J [Haladaptatus
paucihalophilus DX253]
gi|320552188|gb|EFW93833.1| ribosomal RNA large subunit methyltransferase J [Haladaptatus
paucihalophilus DX253]
Length = 254
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY +R+A+KL Q+ + L+ G +V+DLG APG WLQVA + +G +
Sbjct: 5 DHYYNKSKQQGYRSRAAYKLKQLDESAHLLHEGETVVDLGAAPGGWLQVAAEEVG---DT 61
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V+G+D++++K V ++ D + +VI++ + V+LSDM P
Sbjct: 62 GTVIGVDLQRIKDIDGVETIRGDMTEEETQEEVIDVAGSA-----------DVVLSDMAP 110
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+++G + D A SV L +A + AL +L GG V+K+ +
Sbjct: 111 NMTGEYSLDHARSVYLARQAFETAL------------------ELLDSGGDFVVKVFQGP 152
Query: 184 D 184
D
Sbjct: 153 D 153
>gi|296109210|ref|YP_003616159.1| ribosomal RNA methyltransferase RrmJ/FtsJ [methanocaldococcus
infernus ME]
gi|295434024|gb|ADG13195.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanocaldococcus
infernus ME]
Length = 245
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 93/176 (52%), Gaps = 27/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A++L Y +R+ FKLLQI +++ +KP +VLDLGCAPG W++ A + +G +
Sbjct: 15 DPYYRLAKKLKYRSRAYFKLLQINEKFHFLKPKQAVLDLGCAPGGWMEAAKEIVG---DQ 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI---NLPSNQVRALSPKQKGFSVILSDMCPS 124
G +VGID++KVK P D + + D NL + ++ F V++SD P+
Sbjct: 72 GLIVGIDLQKVK-P--FKDKNLIPIQGDFTKERNLKKIKEILRERGREKFDVVISDASPN 128
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
+SG D A SVEL A+ +A + +L+ GH V K+
Sbjct: 129 ISGHWAVDHARSVELVKTALQIA------------------TEMLRKDGHFVAKVF 166
>gi|431931857|ref|YP_007244903.1| 23S rRNA methylase [Thioflavicoccus mobilis 8321]
gi|431830160|gb|AGA91273.1| 23S rRNA methylase [Thioflavicoccus mobilis 8321]
Length = 207
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 35/180 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D+ R AQ+LGY +R+AFKLL++Q++ +L+ G VLDLG APG W QVA Q +GP
Sbjct: 20 DYVIR-AQKLGYRSRAAFKLLELQEKDRLLGRGMRVLDLGAAPGGWSQVATQLVGPR--- 75
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV +D+ ++ V L D R + V A+++ Q +P V+LSDM P
Sbjct: 76 GIVVALDLLAIESLPGVVILQGDFRDEAVLAELM-----QALGEAP----LDVVLSDMAP 126
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SGI D + LG A+D A VLKPGG LV+K+ + +
Sbjct: 127 NISGIAAVDQPRAALLGELALDCA------------------RQVLKPGGALVVKMFQGE 168
>gi|426403400|ref|YP_007022371.1| cell division protein FtsJ [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425860068|gb|AFY01104.1| cell division protein FtsJ [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 196
Score = 92.0 bits (227), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++R+A++ + ARS FKL +I +++K+ KPG VLDLG +PG+W Q A + G
Sbjct: 7 DHYFRKAKQENFAARSVFKLEEIDQKFKMFKPGQVVLDLGASPGSWSQYASKMAG---ER 63
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+ V V + + AD+ +L + F +++SDM P +G
Sbjct: 64 GRVLGVDLSPVTVKLKNA----VFIQADLRDLNLEDIFKEHGFVPPFDIVMSDMAPKTTG 119
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
I D A S+EL A+D+A LK GH V KL S D
Sbjct: 120 IRMTDQARSMELCELALDVA------------------RRFLKKDGHFVCKLFHSDD 158
>gi|300709773|ref|YP_003735587.1| ribosomal RNA large subunit methyltransferase J [Halalkalicoccus
jeotgali B3]
gi|448297457|ref|ZP_21487503.1| 23S rRNA methyltransferase J [Halalkalicoccus jeotgali B3]
gi|299123456|gb|ADJ13795.1| ribosomal RNA large subunit methyltransferase J [Halalkalicoccus
jeotgali B3]
gi|445579766|gb|ELY34159.1| 23S rRNA methyltransferase J [Halalkalicoccus jeotgali B3]
Length = 251
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 31/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + L+ G V+DLG APG WLQVA + +G
Sbjct: 5 DEYYNKAKQQGYRSRAAYKLQQLDEMEDLLSHGDRVVDLGAAPGGWLQVASERVGT---- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-VILSDMCPSVS 126
G+V+G+D++++ SL V+T+ D+ + R ++ G + +LSDM P+++
Sbjct: 61 GTVIGVDLQRID--SLEG---VETIKGDMTD---EGTRGEIIERIGEADTVLSDMAPNMT 112
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A SV L +A + A +L PGG LV+K+ E +D
Sbjct: 113 GEYSLDQARSVHLARQAFETA------------------REILTPGGDLVVKVFEGRD 152
>gi|448363930|ref|ZP_21552524.1| 23S rRNA methyltransferase J [Natrialba asiatica DSM 12278]
gi|445644818|gb|ELY97825.1| 23S rRNA methyltransferase J [Natrialba asiatica DSM 12278]
Length = 258
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + ++ G +V+DLG APG WL+VA +++GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDELENVLSRGDTVVDLGAAPGGWLEVAAEAVGP---D 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++++K H ++T+ D+ + R + +LSDM P++SG
Sbjct: 62 GQVIGVDLQRIKDIEDHD--TIETIRGDMTEERTRD-RVIDAAGGEVDAVLSDMAPNMSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + AL +L G V+K+ E D
Sbjct: 119 EYSLDQARSLHLARQAFETAL------------------ELLDTDGDFVVKIFEGPD 157
>gi|374636480|ref|ZP_09708048.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanotorris formicicus
Mc-S-70]
gi|373558869|gb|EHP85190.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanotorris formicicus
Mc-S-70]
Length = 247
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 97/176 (55%), Gaps = 28/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y A++ Y +R+ FKL Q+ ++++ +K G V+DLGCAPG WLQ A + +G
Sbjct: 17 DFYYNLAKKQKYRSRATFKLFQLNEKFRFMKEGDIVVDLGCAPGGWLQAAREIVG---EK 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRA-LSPKQKGFSVILSDMCPSV 125
G VVG+D++ VK L D V+T+ D+ + Q +R L P + +V++SD P++
Sbjct: 74 GFVVGVDLQSVK--PLPYD-NVKTIKGDMTKEETIQKIREILYPAKP--TVVISDASPNI 128
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
SG+ D A S+EL A+ +A + +LK GG+ +K+ +
Sbjct: 129 SGVWDVDHARSIELTTIALKIA------------------TKLLKEGGNFAVKVFQ 166
>gi|328953687|ref|YP_004371021.1| ribosomal RNA large subunit methyltransferase E [Desulfobacca
acetoxidans DSM 11109]
gi|328454011|gb|AEB09840.1| Ribosomal RNA large subunit methyltransferase E [Desulfobacca
acetoxidans DSM 11109]
Length = 204
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 29/179 (16%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
PD++ R A++ + +R+ +KL I ++++L KPG VLDLGCAPG+WLQ +GP
Sbjct: 8 PDYYSRRARQESFASRAVYKLADIDRKFQLFKPGQCVLDLGCAPGSWLQYISSRIGP--- 64
Query: 67 GGSVVGIDVKKVKVPSLHCDARVQTVSADVINL-PSNQVRALSPKQKGFSVILSDMCPSV 125
G VVG+D + +++ S + ++ V DV L P + +R F V++SD+ PS
Sbjct: 65 QGLVVGLDRQALRISS---NPSIRFVQVDVAALDPGSLIRF----SASFDVVVSDLAPST 117
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
SGI D S++L + + A + +L GH ++K+ + D
Sbjct: 118 SGIKDVDHQRSLDLARLSWEYA------------------NRLLTAAGHYLVKVFQGPD 158
>gi|448366659|ref|ZP_21554782.1| 23S rRNA methyltransferase J [Natrialba aegyptia DSM 13077]
gi|445654114|gb|ELZ06970.1| 23S rRNA methyltransferase J [Natrialba aegyptia DSM 13077]
Length = 258
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + ++ G +V+DLG APG WL+VA +++GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDELENVLSRGDTVVDLGAAPGGWLEVAAEAVGP---D 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++++K H V+T+ D+ + R + +LSDM P++SG
Sbjct: 62 GQVIGVDLQRIKDIEGHD--TVETIRGDMTEERTRD-RVIDAAGGEVDAVLSDMAPNMSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + AL +L G V+K+ E D
Sbjct: 119 EYSLDQARSLHLARQAFETAL------------------ELLDTDGDFVVKIFEGPD 157
>gi|448350999|ref|ZP_21539809.1| 23S rRNA methyltransferase J [Natrialba taiwanensis DSM 12281]
gi|445635187|gb|ELY88358.1| 23S rRNA methyltransferase J [Natrialba taiwanensis DSM 12281]
Length = 258
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + ++ G +V+DLG APG WL+VA +++GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDELENVLSRGDTVVDLGAAPGGWLEVAAEAVGP---D 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++++K H ++T+ D+ + R + +LSDM P++SG
Sbjct: 62 GQVIGVDLQRIKDIEGHD--TIETIRGDMTEERTRD-RVIDAAGGEVDAVLSDMAPNMSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + AL +L G V+K+ E D
Sbjct: 119 EYSLDQARSLHLARQAFETAL------------------ELLDTDGDFVVKIFEGPD 157
>gi|448737824|ref|ZP_21719857.1| 23S rRNA methyltransferase J [Halococcus thailandensis JCM 13552]
gi|445802786|gb|EMA53087.1| 23S rRNA methyltransferase J [Halococcus thailandensis JCM 13552]
Length = 251
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 31/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +RSA+KL Q+ + L S+V+DLG APG WLQVA +
Sbjct: 5 DEYYNKAKQQGYRSRSAYKLQQLDETADLFADRSTVIDLGAAPGGWLQVAAERAPE---- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-VILSDMCPSVS 126
G VVG+D ++++ + V +L VRA G + V+LSDM P++S
Sbjct: 61 GRVVGVDRQRIEA--------IDGVETRRGDLTDEDVRAELKADVGEADVVLSDMAPNMS 112
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G D A SV L +A+D+A VL PGG LV+K+ + +D
Sbjct: 113 GEYNLDHARSVHLARQALDVA------------------REVLTPGGDLVVKVFDGRD 152
>gi|448315676|ref|ZP_21505317.1| 23S rRNA methyltransferase J [Natronococcus jeotgali DSM 18795]
gi|445611048|gb|ELY64811.1| 23S rRNA methyltransferase J [Natronococcus jeotgali DSM 18795]
Length = 261
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 23/178 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ +I +V+DLG APG WL+VA + +GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDDLENVISGSDTVVDLGAAPGGWLEVAAERVGPQ--- 61
Query: 68 GSVVGIDVKKVKVPSLHCDA-RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VVG+D++++K + RV+T+ D+ + R V++SDM P++S
Sbjct: 62 GQVVGVDLQRIKDLEVGGGTDRVETIRGDMTEQRTRD-RVTDAAGGAVDVVISDMAPNMS 120
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A S+ L +A + AL +L GG+ V K+ E D
Sbjct: 121 GEYSLDQARSLHLARQAFETAL------------------DLLDSGGNFVAKVFEGPD 160
>gi|262199868|ref|YP_003271077.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haliangium ochraceum DSM
14365]
gi|262083215|gb|ACY19184.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Haliangium ochraceum DSM
14365]
Length = 199
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 87/176 (49%), Gaps = 32/176 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +++ A++ G++AR+ FKL +I + L + G VLDLGCAPG+WLQ +GP
Sbjct: 12 DVYHQRARKRGFLARAVFKLEEIDDKLDLFRRGDRVLDLGCAPGSWLQYCRTRVGPT--- 68
Query: 68 GSVVGIDVKKV--KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G +VGID + ++P + +S DV + L + F V+LSDM P
Sbjct: 69 GELVGIDRGPLDAEIPG------ARLLSGDVFEVAPE---TLQGPLEAFDVVLSDMAPDT 119
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+GI D A S L RA+D+A VL PGG+ V KL +
Sbjct: 120 TGIRHLDQARSESLFERALDIA------------------DAVLAPGGNFVGKLFQ 157
>gi|448320901|ref|ZP_21510386.1| 23S rRNA methyltransferase J [Natronococcus amylolyticus DSM 10524]
gi|445605328|gb|ELY59258.1| 23S rRNA methyltransferase J [Natronococcus amylolyticus DSM 10524]
Length = 261
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 93/178 (52%), Gaps = 23/178 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ +I G +V+DLG APG WL+VA + +GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDDLENVISGGDTVVDLGAAPGGWLEVAAERVGPQ--- 61
Query: 68 GSVVGIDVKKVKVPSLHCDA-RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+G+D++++K + R++T+ D+ + R V++SDM P++S
Sbjct: 62 GRVIGVDLQRIKDLEMPGGTDRIETIRGDMTE-DRTRDRVTDAAAGSVDVVVSDMAPNMS 120
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A S+ L +A + AL +L GG+ ++K+ + D
Sbjct: 121 GEYSLDQARSLHLARQAFETAL------------------DLLDSGGNFLVKVFDGPD 160
>gi|333911590|ref|YP_004485323.1| ribosomal RNA large subunit methyltransferase E [Methanotorris
igneus Kol 5]
gi|333752179|gb|AEF97258.1| Ribosomal RNA large subunit methyltransferase E [Methanotorris
igneus Kol 5]
Length = 245
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 98/176 (55%), Gaps = 28/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y A++ Y +R+ FKL Q+ ++++ +K G V+DLGCAPG WLQ A + +G +
Sbjct: 15 DFYYNLAKKQKYRSRATFKLFQLNEKFRFMKEGDIVVDLGCAPGGWLQAAREIVG---DR 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRA-LSPKQKGFSVILSDMCPSV 125
G VVG+D++ VK L D V+T+ D+ + Q +R L P + +V++SD P++
Sbjct: 72 GFVVGVDLQSVK--PLPYD-NVKTIKGDMTKEETIQKIREILYPAKP--TVVISDASPNI 126
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
SG+ D A S+EL A+ +A + +LK G+ V+K+ +
Sbjct: 127 SGVWDVDHARSIELTTIALKIA------------------TQLLKERGNFVVKVFQ 164
>gi|298674755|ref|YP_003726505.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanohalobium
evestigatum Z-7303]
gi|298287743|gb|ADI73709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanohalobium
evestigatum Z-7303]
Length = 255
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 32/176 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FYR A+ GY +R+A+KLLQI ++ +I+ +++DLG APG WLQVA + +
Sbjct: 6 DSFYRLAKDEGYRSRAAYKLLQINNRFNVIEKNDTIVDLGAAPGGWLQVARKI-----SN 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRAL--SPKQKGFSVILSDMCPSV 125
VVGID++++K S+ V+TV D+ VR + + + +G V++SD P++
Sbjct: 61 NKVVGIDLQRIK--SIEG---VETVKGDMT--SDRTVRKILKTIEDEGVDVVISDAAPNL 113
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
SG D A S++L A++ A VLKP G+ V+K+ +
Sbjct: 114 SGNWNLDHARSIDLVESALEFA------------------KQVLKPSGNFVVKVFQ 151
>gi|76801271|ref|YP_326279.1| ribosomal RNA methyltransferase [Natronomonas pharaonis DSM 2160]
gi|83305661|sp|Q3IT24.1|RLME_NATPD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|76557136|emb|CAI48710.1| 23S rRNA (uridine-2'-O-) methyltransferase [Natronomonas pharaonis
DSM 2160]
Length = 252
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 30/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY +R+A+KL Q+ + LI G +V+DLG APG WLQVA + G
Sbjct: 5 DDYYNRAKQQGYRSRAAYKLKQLDEAADLINEGDTVVDLGAAPGGWLQVANELAG---EA 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G+VVG+D++++ V+TV D+ + +VRAL + V++SDM P+++
Sbjct: 62 GTVVGVDLQRIDPIE-----GVETVRGDMTEDATREKVRALVGEA---DVVISDMAPNMT 113
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A SV L A + AL +L P G LV K+ E D
Sbjct: 114 GEYSLDHARSVHLARMAFETAL------------------DLLAPNGDLVAKVFEGPD 153
>gi|448337597|ref|ZP_21526672.1| 23S rRNA methyltransferase J [Natrinema pallidum DSM 3751]
gi|445625174|gb|ELY78540.1| 23S rRNA methyltransferase J [Natrinema pallidum DSM 3751]
Length = 257
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ +I G +V+DLG APG WL+VA + +GP
Sbjct: 4 DHYYNKAKQEGYRSRAAYKLKQLDALENVIDRGDTVVDLGAAPGGWLEVAAEEVGPE--- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D +++ + H V+T+ D+ + + R + V++SDM P++SG
Sbjct: 61 GNVIGVDFQRIDDFADHD--TVETLRGDMTEDKTRK-RVVDAAGGPVDVVVSDMAPNMSG 117
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A AL +L GG V+K+ E D
Sbjct: 118 EYSLDQARSLHLARQAFQTAL------------------ELLDSGGDFVVKVFEGPD 156
>gi|406931600|gb|EKD66870.1| hypothetical protein ACD_49C00001G0005 [uncultured bacterium (gcode
4)]
Length = 200
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 89/143 (62%), Gaps = 12/143 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ EA+RLG+ ARSAFKLL+IQ+++ LIKPG ++LD+G APG++LQV + +G +
Sbjct: 10 DKYFLEAKRLGFRARSAFKLLEIQEKFNLIKPGFNILDIGAAPGSFLQVIRKIIG---DT 66
Query: 68 GSVVGIDVKKVK---VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
G +V ID++K++ P+++ + ++ ++ + KQ F +I SD+ PS
Sbjct: 67 GKIVWIDIQKIEKLNFPNIYLIQESIFETEKIV----AELEKIWIKQ--FDLITSDIAPS 120
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
+ + D SVEL + +D+A
Sbjct: 121 TTWQSGVDQYRSVELNLAILDVA 143
>gi|435850786|ref|YP_007312372.1| 23S rRNA methylase [Methanomethylovorans hollandica DSM 15978]
gi|433661416|gb|AGB48842.1| 23S rRNA methylase [Methanomethylovorans hollandica DSM 15978]
Length = 256
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 93/174 (53%), Gaps = 28/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY +R+AFKLLQI +++ +IK G +V+DLG APG W +VA + +G
Sbjct: 7 DTYYWRAKEEGYRSRAAFKLLQINEKFSVIKEGDTVVDLGAAPGGWSEVAKKL-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++++ V+T+ D+ + + + + G V++ D P++SG
Sbjct: 62 GRVIGVDLQRISPIE-----GVETIKGDITSDATIKKIFELVGEGGVDVVICDAAPNLSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ D A S++L A+ A+ +LKPGGH V+K+ +
Sbjct: 117 NWSYDHARSIDLSRSALGCAI------------------KILKPGGHFVVKVFQ 152
>gi|425744890|ref|ZP_18862945.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-323]
gi|425490486|gb|EKU56786.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-323]
Length = 216
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YK+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQIAGKLVG---SN 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V ++N+ L+ +Q V++SDM P
Sbjct: 81 GLVIASDILEMDALPDVTFLQGDFREEEVFEKLLNI-------LNGRQ--VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|116754447|ref|YP_843565.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanosaeta thermophila
PT]
gi|121694084|sp|A0B8A1.1|RLME_METTP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|116665898|gb|ABK14925.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanosaeta thermophila
PT]
Length = 255
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 31/175 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR+A+ GY ARSA+KL QI ++ +I+ GS V+DLG APG WLQVA + +G
Sbjct: 7 DHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQVAREL-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G VVG+D+++++ L + T+ D+ + Q+ A Q V++SD P++S
Sbjct: 62 GIVVGVDLERIE--PLEG---IVTIQGDITKEETLEQIAAALGGQA--DVVISDAAPNLS 114
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
GI D A S++L A+ +A +L+PGG ++K+ +
Sbjct: 115 GIWDVDHARSIDLSRAALRIA------------------KRLLRPGGSFLVKVFQ 151
>gi|408406026|ref|YP_006864010.1| ribosomal RNA large subunit, methyltransferase E [Candidatus
Nitrososphaera gargensis Ga9.2]
gi|408366622|gb|AFU60352.1| ribosomal RNA large subunit, methyltransferase E [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 198
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 91/180 (50%), Gaps = 38/180 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A+ GY ARSA+KLLQ+ Y+++K GS V+DLGCAPG WLQVA + +G
Sbjct: 9 DQYRRLAKDQGYRARSAYKLLQLNSSYRILKKGSKVVDLGCAPGGWLQVATKEVG---QA 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGF------SVILSDM 121
G VVGID+K V+ P L TV I P A+ K G V+LSD+
Sbjct: 66 GKVVGIDLKPVE-PVLGA-----TVLEGSIEDP-----AMLEKIAGILDGGKADVVLSDL 114
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+VSG+ D A + L +ALG A +L+ GG V K+ E
Sbjct: 115 APNVSGVWDVDHARQISLST----IALGFA--------------RQILRAGGSAVFKVFE 156
>gi|294651175|ref|ZP_06728507.1| cell division protein [Acinetobacter haemolyticus ATCC 19194]
gi|292822928|gb|EFF81799.1| cell division protein [Acinetobacter haemolyticus ATCC 19194]
Length = 216
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YK+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQIAGKLVG---SN 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V ++N+ L+ +Q V++SDM P
Sbjct: 81 GLVIASDILEMDALPDVTFLQGDFREEEVFEKLLNI-------LNGRQ--VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|262369449|ref|ZP_06062777.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
johnsonii SH046]
gi|381198192|ref|ZP_09905531.1| cell division protein [Acinetobacter lwoffii WJ10621]
gi|262315517|gb|EEY96556.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
johnsonii SH046]
Length = 216
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++Y +I+PG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DHFVKKAQKEGYRARAAYKLLEIQEKYNIIRPGMTVVDLGAAPGSWSQIAGKLVG---DR 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ ++ V L D R Q V ++N+ + V++SDM P
Sbjct: 81 GLVVASDILEMDALPDVTFLQGDFREQEVFDKLLNILDG---------RKVDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A + VL P G V+K+ +
Sbjct: 132 NTSGNKAVDQPRQIYLCELAIDFA------------------TKVLGPNGQFVVKVFQ 171
>gi|402758201|ref|ZP_10860457.1| 23S rRNA methyltransferase J [Acinetobacter sp. NCTC 7422]
Length = 216
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YK+IKPG +V+DLG APG+W Q+A + +G
Sbjct: 24 DHFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQIAGKLVGA---N 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q V++SDM P
Sbjct: 81 GLVIASDILAMDALPDVTFLQGDFREEEVFEKLLNI-------LNGRQ--VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G ++K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFIVKVFQ 171
>gi|226951533|ref|ZP_03821997.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter sp. ATCC 27244]
gi|226837725|gb|EEH70108.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter sp. ATCC 27244]
Length = 216
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 94/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YK+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQIAGKLVG---SN 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V ++N+ L+ +Q V++SDM P
Sbjct: 81 GLVIASDILEMDALPDVTFLQGDFREEDVFEKLLNI-------LNGRQ--VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|162450262|ref|YP_001612629.1| hypothetical protein sce1990 [Sorangium cellulosum So ce56]
gi|189040342|sp|A9FQE4.1|RLME_SORC5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|161160844|emb|CAN92149.1| rrmJ [Sorangium cellulosum So ce56]
Length = 212
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
PD F + A+ GY ARS FKL +I ++ +L++PG VLDLG APG+W A Q +G
Sbjct: 19 PDAFTKAAKAQGYPARSVFKLEEIDRRVRLLRPGQRVLDLGAAPGSWSMYAAQRIG---A 75
Query: 67 GGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
GG ++ +D+ + + + V D ++L + + +P + V+LSDM P+ S
Sbjct: 76 GGKLLAVDLSPI---TAAFGPQATVVQGDALSLTNEALAQFAP----YDVVLSDMAPATS 128
Query: 127 GITTKDAALSVELGMR 142
G D A S EL MR
Sbjct: 129 GSKIADQARSYELFMR 144
>gi|403050929|ref|ZP_10905413.1| 23S rRNA methyltransferase J [Acinetobacter bereziniae LMG 1003]
Length = 216
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YK+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQIAGKLVG---DK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V ++N+ + + V++SDM P
Sbjct: 81 GLVIASDILEMDALPDVTFLQGDFREEEVFEKLLNILNGRT---------VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A + VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------NKVLGPKGQFVVKVFQ 171
>gi|407013459|gb|EKE27605.1| hypothetical protein ACD_3C00188G0021 [uncultured bacterium (gcode
4)]
Length = 206
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 8/141 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ EA+RL Y ARSAFKLL+IQ+++ LIKP SVLD+ AP ++LQV + + N
Sbjct: 15 DRYFMEAKRLWYRARSAFKLLEIQEKFNLIKPWFSVLDVWAAPWSFLQVIYKIIW---ND 71
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
+VGID++K++ +P + + + +V F +I SD+ PS +
Sbjct: 72 AKIVGIDIQKIEPLPY----QNLILIQESIFEYEKLKVIFEEKGLSKFDLITSDIAPSTT 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G T D SVEL + VD A
Sbjct: 128 GQTWVDQYRSVELNLAIVDFA 148
>gi|445423380|ref|ZP_21436618.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
WC-743]
gi|444755760|gb|ELW80335.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
WC-743]
Length = 199
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YK+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 7 DPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQIAGKLVG---DK 63
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V ++N+ + + V++SDM P
Sbjct: 64 GLVIASDILEMDALPDVTFLQGDFREEEVFEKLLNILNGRT---------VDVVISDMAP 114
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A + VL P G V+K+ +
Sbjct: 115 NTSGNRAVDQPRQIYLCELALDFA------------------NKVLGPKGQFVVKVFQ 154
>gi|406911036|gb|EKD50917.1| cell division protein FtsJ [uncultured bacterium]
Length = 200
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 13/144 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY +A++ GYVARSA+K++++ ++ + K G +V+DLG APG WLQV + LG
Sbjct: 10 DHFYLKAKKEGYVARSAYKIVELSDRFGIFKLGHTVIDLGSAPGGWLQVGSKQLG---TK 66
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTV--SADVIN-LPSNQVRALSPKQKGFSVILSDMCPS 124
G ++GID+ +P LH T+ AD + + + ++A P G ++SDM P+
Sbjct: 67 GRIIGIDL----LP-LHMQIGNNTIFKQADFTDPVSQSWIKAQCP--HGVDWVISDMSPN 119
Query: 125 VSGITTKDAALSVELGMRAVDLAL 148
+SG+ DA SV L +A++ AL
Sbjct: 120 LSGVKFADALASVSLCEQALEFAL 143
>gi|421857650|ref|ZP_16289979.1| ribosomal RNA large subunit methyltransferase E, partial
[Acinetobacter radioresistens DSM 6976 = NBRC 102413]
gi|403186913|dbj|GAB76180.1| ribosomal RNA large subunit methyltransferase E, partial
[Acinetobacter radioresistens DSM 6976 = NBRC 102413]
Length = 197
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---DK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q V++SDM P
Sbjct: 81 GLVIASDILPMDALADVTFLQGDFREEEVFEKLLNI-------LNGRQ--VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|389714639|ref|ZP_10187213.1| 23S rRNA methyltransferase J [Acinetobacter sp. HA]
gi|388609774|gb|EIM38920.1| 23S rRNA methyltransferase J [Acinetobacter sp. HA]
Length = 216
Score = 89.4 bits (220), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 92/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+ ++AQ+ GY AR+A+KLL+IQ++Y +IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DFYVKKAQKEGYRARAAYKLLEIQEKYGIIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R Q V ++N+ + V++SDM P
Sbjct: 81 GLVIASDILEMDALPDVTFLQGDFREQEVFDKLLNILDGRT---------VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A + VL P G ++K+ +
Sbjct: 132 NTSGNKAVDQPRQIYLCELALDFA------------------NKVLGPKGQFIVKVFQ 171
>gi|424744751|ref|ZP_18173035.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-141]
gi|422942651|gb|EKU37697.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-141]
Length = 216
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEDVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G LV+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQLVVKVFQ 171
>gi|448726837|ref|ZP_21709226.1| 23S rRNA methyltransferase J [Halococcus morrhuae DSM 1307]
gi|445793345|gb|EMA43925.1| 23S rRNA methyltransferase J [Halococcus morrhuae DSM 1307]
Length = 251
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 31/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +RSA+KL Q+ + L S+V+DLG APG WLQVA +
Sbjct: 5 DEYYNKAKQQGYRSRSAYKLQQLDETADLFTDRSTVIDLGAAPGGWLQVAAERAPE---- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRA-LSPKQKGFSVILSDMCPSVS 126
G VVG+D ++++ + V +L VRA L V+LSDM P++S
Sbjct: 61 GRVVGVDRQRIEA--------IDGVETRRGDLTDEDVRADLKADIGEADVVLSDMAPNMS 112
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G D A SV L +A+D+A VL PGG L +K+ + +D
Sbjct: 113 GEYDLDHARSVHLARQALDVA------------------REVLTPGGDLAVKVFDGRD 152
>gi|255318895|ref|ZP_05360121.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens SK82]
gi|262378850|ref|ZP_06072007.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens SH164]
gi|255304151|gb|EET83342.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens SK82]
gi|262300135|gb|EEY88047.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens SH164]
Length = 216
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---DK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q V++SDM P
Sbjct: 81 GLVIASDILPMDALADVTFLQGDFREEEVFEKLLNI-------LNGRQ--VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|299769010|ref|YP_003731036.1| FtsJ-like methyltransferase family protein [Acinetobacter
oleivorans DR1]
gi|298699098|gb|ADI89663.1| FtsJ-like methyltransferase family protein [Acinetobacter
oleivorans DR1]
Length = 216
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVSFLQGDFREEDVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G LV+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQLVVKVFQ 171
>gi|282164555|ref|YP_003356940.1| ribosomal RNA large subunit methyltransferase J [Methanocella
paludicola SANAE]
gi|282156869|dbj|BAI61957.1| ribosomal RNA large subunit methyltransferase J [Methanocella
paludicola SANAE]
Length = 254
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 98/174 (56%), Gaps = 30/174 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y +A+++GY +R+AFKL I +++ LIK G +V+DLG APG WLQVA + +
Sbjct: 7 DFYYNKAKQMGYRSRAAFKLKFINEKFGLIKKGDAVVDLGAAPGGWLQVAKEI-----SE 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D+++++ + V T+ D+ + P Q + +K + ++ D P++SG
Sbjct: 62 GTVIGVDLQRIE----PVEGAV-TIKGDMTS-PETQAKIFEKVEK-VNAVICDAAPNLSG 114
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D A S++L A+D+A + +L PGG+ ++K+ +
Sbjct: 115 NWALDHARSIDLSKTALDVA------------------AKILAPGGNFLVKVFQ 150
>gi|448406809|ref|ZP_21573241.1| 23S rRNA methyltransferase J [Halosimplex carlsbadense 2-9-1]
gi|445676615|gb|ELZ29132.1| 23S rRNA methyltransferase J [Halosimplex carlsbadense 2-9-1]
Length = 261
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 28/187 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ + L PG++V+DLG APG WLQVA +
Sbjct: 1 MSG---KDDYYNRAKQQGYRARSAYKLKQLDETAGLFGPGNTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCD---ARVQTVSADVINLPSNQVRALSPKQKGFSVI 117
+ + G+VVG+D +++ H R A I+ +V A ++ V+
Sbjct: 58 VS---DRGTVVGVDRQRIDPLEDHDSVELVRGDLTEASTIDEVVERVGA-DTGERPVDVV 113
Query: 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
+SDM P+++G D A SV L +A ++A VL GG L +
Sbjct: 114 ISDMAPNMTGDYDLDHARSVHLARQAFEVA------------------DRVLDSGGDLAV 155
Query: 178 KLLESQD 184
K+ + +D
Sbjct: 156 KVFDGKD 162
>gi|383320393|ref|YP_005381234.1| 23S rRNA Um2552-methyltransferase [Methanocella conradii HZ254]
gi|379321763|gb|AFD00716.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanocella conradii
HZ254]
Length = 261
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 30/174 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY +A+++GY +R+AFKL I +++ +IK G V+DLG APG WLQVA + +G
Sbjct: 16 DVFYNKAKQMGYRSRAAFKLKFINEKFGIIKAGDVVVDLGAAPGGWLQVAKEL-----SG 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D++K++ V T+ D+ + P Q + +K +V++ D P+++G
Sbjct: 71 GTVIGVDLQKIEPIE-----GVITIKGDMTS-PETQQKIFEKVEK-VNVVICDAAPNLTG 123
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D A S++L A+D+A S +L PGG+ ++K+ +
Sbjct: 124 NWALDHARSIDLAKTALDVA------------------SRLLVPGGNFLVKVFQ 159
>gi|397780321|ref|YP_006544794.1| ribosomal RNA large subunit methyltransferase E [Methanoculleus
bourgensis MS2]
gi|396938823|emb|CCJ36078.1| ribosomal RNA large subunit methyltransferase E [Methanoculleus
bourgensis MS2]
Length = 203
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 29/176 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D YR+A + GY AR+A+KLL+IQ++ I+P +V+DLG APG+WLQV + L G
Sbjct: 8 DSVYRKAMKAGYRARAAYKLLEIQQKSGFIRPDDNVVDLGAAPGSWLQV-IRDL----TG 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+ + VP V T++ D + P Q R +V++SD P +SG
Sbjct: 63 GKVIGVDLNPI-VPM----EGVTTITGDFTD-PLIQERIREEAGGIVNVVVSDAAPKLSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D A +V LG A+ A +LKPGG+LVIK + +
Sbjct: 117 QKSYDQARAVGLGEDALAFA------------------CTILKPGGNLVIKSFQGE 154
>gi|358011504|ref|ZP_09143314.1| cell division protein [Acinetobacter sp. P8-3-8]
Length = 216
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 19/150 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YK+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQIAGKLVG---DK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V ++N+ + + V++SDM P
Sbjct: 81 GLVIASDILEMDALPDVTFLQGDFREEEVFEKLLNILNGRT---------VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLA---LGP 150
+ SG D + L A+D A LGP
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFANKVLGP 161
>gi|410463691|ref|ZP_11317190.1| 23S rRNA methylase [Desulfovibrio magneticus str. Maddingley MBC34]
gi|409983189|gb|EKO39579.1| 23S rRNA methylase [Desulfovibrio magneticus str. Maddingley MBC34]
Length = 213
Score = 89.0 bits (219), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 27/179 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A++ Y ARS +KL +I+KQ +L+ PG+++LDLG PG+W A + +GP G
Sbjct: 6 DHYFNKAKQDNYPARSVYKLEEIEKQSRLLTPGAAILDLGACPGSWTLYAAKRVGP---G 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSVS 126
G V+GID+ V + D++ + A +Q G F V+LSDM P +
Sbjct: 63 GRVLGIDLNPA---GTAFPGNVTYLIGDMLEPGPDIAEAF--EQFGPFDVVLSDMAPKTT 117
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
G D A S+EL A+ +A+ LKPGG V+K+ + D+
Sbjct: 118 GHKFTDQARSLELCEAALSVAV------------------ARLKPGGAFVVKIFQGPDS 158
>gi|408417803|ref|YP_006759217.1| ribosomal RNA large subunit methyltransferase RrmJ [Desulfobacula
toluolica Tol2]
gi|405105016|emb|CCK78513.1| RrmJ: ribosomal RNA large subunit methyltransferase J (23S rRNA
methylase) [Desulfobacula toluolica Tol2]
Length = 217
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 31/179 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D A+ Y ARS +KL +IQ ++K++K VLDLGCAPG+WL A + +G N
Sbjct: 30 DHLTHRAKAENYPARSIYKLEEIQNKFKVMKKNDQVLDLGCAPGSWLLYAAKQVG---NK 86
Query: 68 GSVVGIDVK--KVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G V GID+K ++K+P V + +++N + A K +GF VILSDM P+
Sbjct: 87 GLVKGIDLKPIEIKLPD-----NVVAIKDNILNQDN---AAFLDKNRGFDVILSDMAPAT 138
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+G DA S EL D+AL A L G+ V K+ + D
Sbjct: 139 TGRKDVDALRSFEL----CDMALTIA--------------KNFLVQNGNFVCKIFQGND 179
>gi|406927995|gb|EKD63908.1| hypothetical protein ACD_51C00153G0005 [uncultured bacterium]
Length = 213
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 27/184 (14%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D F+ +A+ GY ARSA+KL +I +++++I+ G +VLDLG APG+++QV + +G
Sbjct: 11 GYNPQDKFFHKAKEEGYRARSAYKLKEILERFRIIRAGFNVLDLGSAPGSFIQVISKIVG 70
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDA--RVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P G+VVGID+K+++ P +A V T D+ + + + ++ Q+ F I SD
Sbjct: 71 P---SGTVVGIDLKEIE-PFGASEALKNVTTYVGDIFDF--DYLESILGAQR-FDAITSD 123
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
+ P+ +GI D SV+L + A+ + LKPGG + K+
Sbjct: 124 LMPNTTGIKFLDQDSSVDLNIAALRVVRKH------------------LKPGGSAIFKIF 165
Query: 181 ESQD 184
S +
Sbjct: 166 NSNE 169
>gi|444912349|ref|ZP_21232514.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Cystobacter fuscus DSM 2262]
gi|444717257|gb|ELW58092.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Cystobacter fuscus DSM 2262]
Length = 205
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 84/142 (59%), Gaps = 9/142 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ G ARSAFK+ +I K+Y +K G++VLDLG APG +LQ+ ++GP G
Sbjct: 9 DHYFKKAKQEGLRARSAFKVDEILKRYPFLKKGATVLDLGAAPGGFLQILADTVGP---G 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSVS 126
G V+G+D+ ++ V+T DV L + L G F ++SDM P S
Sbjct: 66 GRVIGVDIVPIRP---FTQPFVKTAVLDV--LADDFDAKLREMYDGPFDAVISDMAPKTS 120
Query: 127 GITTKDAALSVELGMRAVDLAL 148
GI T D A S+ L +A+++++
Sbjct: 121 GIRTTDEARSLRLARKALEVSV 142
>gi|262371957|ref|ZP_06065236.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
junii SH205]
gi|262311982|gb|EEY93067.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
junii SH205]
Length = 216
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YK+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKMIKPGMTVVDLGAAPGSWSQIAGKLVG---SN 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q V++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEEVFEKLLNI-------LNGRQ--VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G ++K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFIVKVFQ 171
>gi|262278061|ref|ZP_06055846.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
calcoaceticus RUH2202]
gi|262258412|gb|EEY77145.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
calcoaceticus RUH2202]
Length = 216
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVVASDILPMDALPDVTFLQGDFREEDVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|406035560|ref|ZP_11042924.1| 23S rRNA methyltransferase J [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 216
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVGA---N 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEEVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|169632637|ref|YP_001706373.1| cell division protein [Acinetobacter baumannii SDF]
gi|169794969|ref|YP_001712762.1| cell division protein [Acinetobacter baumannii AYE]
gi|184159245|ref|YP_001847584.1| 23S rRNA methylase [Acinetobacter baumannii ACICU]
gi|213157620|ref|YP_002320418.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii AB0057]
gi|215482520|ref|YP_002324708.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB307-0294]
gi|239503386|ref|ZP_04662696.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB900]
gi|260549221|ref|ZP_05823441.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
RUH2624]
gi|260556451|ref|ZP_05828669.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|301346065|ref|ZP_07226806.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB056]
gi|301511493|ref|ZP_07236730.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB058]
gi|301595416|ref|ZP_07240424.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB059]
gi|332855128|ref|ZP_08435711.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6013150]
gi|332868236|ref|ZP_08438078.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6013113]
gi|332876154|ref|ZP_08443936.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6014059]
gi|375135741|ref|YP_004996391.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
gi|384132939|ref|YP_005515551.1| Ribosomal RNA large subunit methyltransferase [Acinetobacter
baumannii 1656-2]
gi|384144357|ref|YP_005527067.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter baumannii MDR-ZJ06]
gi|385238686|ref|YP_005800025.1| 23S rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
gi|387122831|ref|YP_006288713.1| 23S rRNA methylase [Acinetobacter baumannii MDR-TJ]
gi|403674597|ref|ZP_10936844.1| 23S rRNA methyltransferase J [Acinetobacter sp. NCTC 10304]
gi|407933831|ref|YP_006849474.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii TYTH-1]
gi|416145188|ref|ZP_11600305.1| 23S rRNA methylase [Acinetobacter baumannii AB210]
gi|417546057|ref|ZP_12197143.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC032]
gi|417550643|ref|ZP_12201722.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-18]
gi|417553874|ref|ZP_12204943.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-81]
gi|417562283|ref|ZP_12213162.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC137]
gi|417564222|ref|ZP_12215096.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC143]
gi|417569951|ref|ZP_12220809.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC189]
gi|417573593|ref|ZP_12224447.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Canada BC-5]
gi|417575611|ref|ZP_12226459.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-17]
gi|417870479|ref|ZP_12515444.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH1]
gi|417874521|ref|ZP_12519372.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH2]
gi|417877458|ref|ZP_12522160.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH3]
gi|417884481|ref|ZP_12528678.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH4]
gi|421199035|ref|ZP_15656200.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC109]
gi|421204932|ref|ZP_15662042.1| cell division protein [Acinetobacter baumannii AC12]
gi|421454635|ref|ZP_15903982.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-123]
gi|421536783|ref|ZP_15983012.1| cell division protein [Acinetobacter baumannii AC30]
gi|421622646|ref|ZP_16063546.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC074]
gi|421626434|ref|ZP_16067263.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC098]
gi|421627892|ref|ZP_16068688.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC180]
gi|421632409|ref|ZP_16073065.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-13]
gi|421643272|ref|ZP_16083774.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-235]
gi|421646610|ref|ZP_16087056.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-251]
gi|421652655|ref|ZP_16093004.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC0162]
gi|421655326|ref|ZP_16095649.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-72]
gi|421657153|ref|ZP_16097427.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-83]
gi|421661122|ref|ZP_16101300.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC110]
gi|421667314|ref|ZP_16107387.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC087]
gi|421670290|ref|ZP_16110292.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC099]
gi|421673327|ref|ZP_16113269.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC065]
gi|421678860|ref|ZP_16118743.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC111]
gi|421688952|ref|ZP_16128641.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-143]
gi|421689808|ref|ZP_16129481.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-116]
gi|421694574|ref|ZP_16134195.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-692]
gi|421698675|ref|ZP_16138215.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-58]
gi|421704512|ref|ZP_16143957.1| 23S rRNA methyltransferase J [Acinetobacter baumannii ZWS1122]
gi|421708290|ref|ZP_16147669.1| 23S rRNA methyltransferase J [Acinetobacter baumannii ZWS1219]
gi|421787390|ref|ZP_16223744.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-82]
gi|421792651|ref|ZP_16228802.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-2]
gi|421796267|ref|ZP_16232333.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-21]
gi|421799956|ref|ZP_16235942.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Canada BC1]
gi|421805202|ref|ZP_16241092.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-A-694]
gi|421808412|ref|ZP_16244260.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC035]
gi|424051325|ref|ZP_17788857.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab11111]
gi|424054544|ref|ZP_17792068.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
nosocomialis Ab22222]
gi|424058900|ref|ZP_17796391.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab33333]
gi|424062363|ref|ZP_17799849.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab44444]
gi|425741291|ref|ZP_18859443.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-487]
gi|425749438|ref|ZP_18867417.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-348]
gi|425752243|ref|ZP_18870160.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-113]
gi|427423412|ref|ZP_18913565.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-136]
gi|445401812|ref|ZP_21430431.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-57]
gi|445428576|ref|ZP_21438096.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC021]
gi|445451950|ref|ZP_21444883.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-A-92]
gi|445460145|ref|ZP_21448054.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC047]
gi|445469825|ref|ZP_21451405.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC338]
gi|445477088|ref|ZP_21454063.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-78]
gi|445490527|ref|ZP_21459240.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii AA-014]
gi|158513670|sp|A3M851.2|RLME_ACIBT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703271|sp|B7GY18.1|RLME_ACIB3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703272|sp|B7I636.1|RLME_ACIB5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703273|sp|B2HXD3.1|RLME_ACIBC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703274|sp|B0VSM4.1|RLME_ACIBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703275|sp|B0VEE9.1|RLME_ACIBY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|169147896|emb|CAM85759.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter baumannii AYE]
gi|169151429|emb|CAP00164.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter baumannii]
gi|183210839|gb|ACC58237.1| 23S rRNA methylase [Acinetobacter baumannii ACICU]
gi|193078152|gb|ABO13095.2| cell division protein [Acinetobacter baumannii ATCC 17978]
gi|213056780|gb|ACJ41682.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii AB0057]
gi|213986569|gb|ACJ56868.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
AB307-0294]
gi|260407627|gb|EEX01100.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter sp.
RUH2624]
gi|260409710|gb|EEX03010.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii ATCC 19606 = CIP 70.34]
gi|322509159|gb|ADX04613.1| Ribosomal RNA large subunit methyltransferase [Acinetobacter
baumannii 1656-2]
gi|323519187|gb|ADX93568.1| 23S rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
gi|325123186|gb|ADY82709.1| cell division protein [Acinetobacter calcoaceticus PHEA-2]
gi|332727631|gb|EGJ59050.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6013150]
gi|332733497|gb|EGJ64667.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6013113]
gi|332735652|gb|EGJ66697.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii 6014059]
gi|333367304|gb|EGK49318.1| 23S rRNA methylase [Acinetobacter baumannii AB210]
gi|342227871|gb|EGT92780.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH1]
gi|342228735|gb|EGT93614.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH2]
gi|342234266|gb|EGT98935.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH4]
gi|342235654|gb|EGU00240.1| FtsJ-like methyltransferase family protein [Acinetobacter baumannii
ABNIH3]
gi|347594850|gb|AEP07571.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter baumannii MDR-ZJ06]
gi|385877323|gb|AFI94418.1| 23S rRNA methylase [Acinetobacter baumannii MDR-TJ]
gi|395524865|gb|EJG12954.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC137]
gi|395554174|gb|EJG20180.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC189]
gi|395555978|gb|EJG21979.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC143]
gi|395565931|gb|EJG27578.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC109]
gi|395571100|gb|EJG31759.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-17]
gi|398325575|gb|EJN41743.1| cell division protein [Acinetobacter baumannii AC12]
gi|400209161|gb|EJO40131.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Canada BC-5]
gi|400212425|gb|EJO43384.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-123]
gi|400383945|gb|EJP42623.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC032]
gi|400386468|gb|EJP49542.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-18]
gi|400390291|gb|EJP57338.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-81]
gi|404559315|gb|EKA64579.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-143]
gi|404565312|gb|EKA70480.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-116]
gi|404567790|gb|EKA72906.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-692]
gi|404572371|gb|EKA77415.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-58]
gi|404664881|gb|EKB32844.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab11111]
gi|404670644|gb|EKB38532.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab33333]
gi|404672090|gb|EKB39930.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
baumannii Ab44444]
gi|407190346|gb|EKE61565.1| 23S rRNA methyltransferase J [Acinetobacter baumannii ZWS1122]
gi|407190903|gb|EKE62118.1| 23S rRNA methyltransferase J [Acinetobacter baumannii ZWS1219]
gi|407439293|gb|EKF45818.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter
nosocomialis Ab22222]
gi|407902412|gb|AFU39243.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii TYTH-1]
gi|408504519|gb|EKK06266.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC0162]
gi|408508651|gb|EKK10330.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-72]
gi|408509458|gb|EKK11130.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-235]
gi|408517322|gb|EKK18866.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii IS-251]
gi|408694669|gb|EKL40233.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC074]
gi|408695705|gb|EKL41260.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC098]
gi|408709289|gb|EKL54536.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-13]
gi|408709589|gb|EKL54833.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC180]
gi|408714204|gb|EKL59358.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-83]
gi|408716125|gb|EKL61245.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC110]
gi|409985296|gb|EKO41520.1| cell division protein [Acinetobacter baumannii AC30]
gi|410385012|gb|EKP37508.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC087]
gi|410385657|gb|EKP38142.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC099]
gi|410386761|gb|EKP39228.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC065]
gi|410391950|gb|EKP44313.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC111]
gi|410399595|gb|EKP51782.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-21]
gi|410399683|gb|EKP51868.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-2]
gi|410407670|gb|EKP59652.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-82]
gi|410408816|gb|EKP60761.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Canada BC1]
gi|410409452|gb|EKP61383.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-A-694]
gi|410415727|gb|EKP67511.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC035]
gi|425489133|gb|EKU55450.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-348]
gi|425493018|gb|EKU59266.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-487]
gi|425499189|gb|EKU65245.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-113]
gi|425699757|gb|EKU69361.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-136]
gi|444754867|gb|ELW79476.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii WC-A-92]
gi|444761817|gb|ELW86195.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC021]
gi|444765790|gb|ELW90079.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii AA-014]
gi|444773380|gb|ELW97476.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC047]
gi|444773737|gb|ELW97829.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii OIFC338]
gi|444776595|gb|ELX00633.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-78]
gi|444782898|gb|ELX06771.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
baumannii Naval-57]
gi|452946692|gb|EME52187.1| 23S rRNA methyltransferase J [Acinetobacter baumannii MSP4-16]
Length = 216
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEAVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|448401287|ref|ZP_21571523.1| 23S rRNA methyltransferase J [Haloterrigena limicola JCM 13563]
gi|445666550|gb|ELZ19209.1| 23S rRNA methyltransferase J [Haloterrigena limicola JCM 13563]
Length = 258
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + G +V+DLG APG WL+VA + +G +
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDDLEHVFDRGDTVVDLGAAPGGWLEVAAEEVG---SQ 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D +++K H + V+T+ D+ + R + ++SDM P++SG
Sbjct: 62 GNVIGVDFQRIKDFDDHDN--VETLRGDMTEEKTRD-RVIDAAGGSVDAVISDMAPNMSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+ L +A + +L +L GG V+K+ E D
Sbjct: 119 EYSLDQARSLHLARQAFETSL------------------ELLDSGGDFVVKVFEGPD 157
>gi|389578805|ref|ZP_10168832.1| 23S rRNA methylase [Desulfobacter postgatei 2ac9]
gi|389400440|gb|EIM62662.1| 23S rRNA methylase [Desulfobacter postgatei 2ac9]
Length = 208
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 8/146 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++A+ +GY ARS FKL IQ ++++IK G VLDLGC+PG+W A + +G +
Sbjct: 19 DHLTQKAKSMGYPARSVFKLEDIQNKFQIIKKGDIVLDLGCSPGSWTLYAAKLVG---DQ 75
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V GID+K V+ + A T+ D+ L + P F+ ++SDM P+ +G
Sbjct: 76 GRVFGIDLKAVET---NLPANALTIQDDI--LSPEHPAFIEPHTGKFNAVISDMAPATTG 130
Query: 128 ITTKDAALSVELGMRAVDLALGPAAL 153
DA S+EL A+D AL A
Sbjct: 131 RKDVDAIRSLELCRMALDTALKNLAF 156
>gi|289581714|ref|YP_003480180.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Natrialba magadii ATCC
43099]
gi|448282879|ref|ZP_21474161.1| 23S rRNA methyltransferase J [Natrialba magadii ATCC 43099]
gi|289531267|gb|ADD05618.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Natrialba magadii ATCC
43099]
gi|445575494|gb|ELY29969.1| 23S rRNA methyltransferase J [Natrialba magadii ATCC 43099]
Length = 273
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 15/153 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WL+VA +++GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDQLENVISGGDTVVDLGAAPGGWLEVAAEAVGPQ--- 61
Query: 68 GSVVGIDVKKVK-------VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-----FS 115
G V+G+D+++++ + +L D + VI V +
Sbjct: 62 GQVIGVDLQRIRDFDDHDTIETLRGDMTEERTRERVIEAAGGDVESAETATDAGTGGPVD 121
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLAL 148
V++SDM P++SG + D A S+ L +A + AL
Sbjct: 122 VVISDMAPNMSGEYSLDQARSLHLARQAFETAL 154
>gi|410670198|ref|YP_006922569.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanolobus
psychrophilus R15]
gi|409169326|gb|AFV23201.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanolobus
psychrophilus R15]
Length = 258
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 28/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ G+ +R+++KL QI ++++LIK G +V+DLG APG WL+VA +G
Sbjct: 7 DNYYWRAKDEGFRSRASYKLFQINEKHQLIKSGDTVVDLGAAPGGWLEVAKDL-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++G+D++K+ V+T+ D+ + + + +G V++ D P++SG
Sbjct: 62 GRIIGVDLQKISPIE-----GVETIKGDITSDRTIEKIVEMVGLRGVDVVICDAAPNLSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ D A S++L A++ A +LKPGGH V+K+ +
Sbjct: 117 NWSLDHARSIDLTTSALECA------------------KKILKPGGHFVVKVFQ 152
>gi|126642713|ref|YP_001085697.1| cell division protein [Acinetobacter baumannii ATCC 17978]
Length = 199
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 7 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 63
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 64 GLVIASDILPMDALPDVTFLQGDFREEAVFEKLLNI-------LNGRQ--VDIVISDMAP 114
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 115 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 154
>gi|448492159|ref|ZP_21608753.1| 23S rRNA methyltransferase J [Halorubrum californiensis DSM 19288]
gi|445691618|gb|ELZ43802.1| 23S rRNA methyltransferase J [Halorubrum californiensis DSM 19288]
Length = 261
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY ARSA+KL Q+ ++ L+ PG +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDDYYNRSKQQGYRARSAYKLKQLDEEADLLAPGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D+++++ H V+T+ D+ + + ++G V+ SD
Sbjct: 58 VGEG---GTVVGVDLQRIEALDDHD---VETIRGDMTEERTRHYLREAVGERGADVVASD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G + D A SV L +A+D A +L GG V+K+
Sbjct: 112 MAPNMTGEYSLDHARSVHLARQALDTA------------------DELLATGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>gi|293609978|ref|ZP_06692280.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828430|gb|EFF86793.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 207
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 15 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 71
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 72 GLVIASDILPMDALPDVTFLQGDFREEAVFEKLLNI-------LNGRQ--VDIVISDMAP 122
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 123 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 162
>gi|258405869|ref|YP_003198611.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfohalobium
retbaense DSM 5692]
gi|257798096|gb|ACV69033.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfohalobium
retbaense DSM 5692]
Length = 199
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +++ A++ Y ARS +KL ++ K+++ + G +LDLG APG+W A + G
Sbjct: 6 DHYFKRAKQDNYPARSVYKLQELDKRFQFLAKGQRILDLGAAPGSWTLFAAKKTG---AA 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV +D++ + + V + D+++ PS + + Q F V+LSDM P +G
Sbjct: 63 GRVVAVDLQAI---DIELPDHVTALQDDLLH-PSPRFAEVMGSQAPFDVVLSDMAPKTTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A S+EL A D+AL + PGG V+K+ E D
Sbjct: 119 VKITDQARSLELAEMARDVAL-----------------DTLKTPGGTFVVKIFEGPD 158
>gi|448302198|ref|ZP_21492181.1| 23S rRNA methyltransferase J [Natronorubrum tibetense GA33]
gi|445581857|gb|ELY36205.1| 23S rRNA methyltransferase J [Natronorubrum tibetense GA33]
Length = 261
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 27/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY +R+A+KL Q+ +I+ +V+DLG APG WLQVA + +GP
Sbjct: 5 DDYYNRAKQQGYRSRAAYKLKQLDDLENVIEGRDTVVDLGAAPGGWLQVAAEKVGPQ--- 61
Query: 68 GSVVGIDVKKVK---VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
G+V+G+D++++K P+L +V+T+ D+ + + R + ++SDM P+
Sbjct: 62 GTVIGVDLQRIKDLEDPALVD--QVETLRGDMTEEKTRE-RVVEAAGGKVDAVVSDMAPN 118
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+SG + D A S+ L +A + AL +L GG+ V+K+ E D
Sbjct: 119 MSGEYSLDQARSLYLARQAFETAL------------------ELLDTGGNFVVKVFEGPD 160
>gi|406039651|ref|ZP_11047006.1| 23S rRNA methyltransferase J [Acinetobacter ursingii DSM 16037 =
CIP 107286]
Length = 216
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKRAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ + + +++SDM P
Sbjct: 81 GLVIASDILAMDALPDVTFLQGDFREEEVFEKLLNILNGRT---------VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|448531520|ref|ZP_21621063.1| 23S rRNA methyltransferase J [Halorubrum hochstenium ATCC 700873]
gi|445707104|gb|ELZ58966.1| 23S rRNA methyltransferase J [Halorubrum hochstenium ATCC 700873]
Length = 260
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY ARSA+KL QI ++ L + G +V+DLG APG WLQVA ++
Sbjct: 1 MSG---KDDYYNRSKQQGYRARSAYKLKQIDEEADLFERGDTVVDLGAAPGGWLQVAAEA 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + + G V++SD
Sbjct: 58 VGEG---GTVVGVDLQRIDDLDDHD---VETIRGDMTEERTRHYLREAVDEGGADVVVSD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G T D A SV L +A D A +L GG V+K+
Sbjct: 112 MAPNMTGEYTLDHARSVHLARQAFDTA------------------DELLASGGDFVVKVF 153
Query: 181 ESQD 184
+ D
Sbjct: 154 QGDD 157
>gi|303249142|ref|ZP_07335382.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
fructosovorans JJ]
gi|302489467|gb|EFL49414.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
fructosovorans JJ]
Length = 222
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 25/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ Y ARS +KL +I+KQ L+ PG++VLDLG PG+W A +G
Sbjct: 6 DHYFKKAKQDNYPARSVYKLEEIEKQSHLLFPGAAVLDLGACPGSWTLFAASRVG---EK 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ ID+ + V ++ D+++ P ++ A + F V+LSDM P +G
Sbjct: 63 GRVLSIDLNEA---GTAFPGNVTYLTGDMLD-PGPEILAAFARLGPFDVVLSDMAPKTTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
+ D A S+EL A+ +A LKPGG V+K+ + DA
Sbjct: 119 VKFADQARSLELCEAALSVAF------------------TRLKPGGAFVVKIFQGPDA 158
>gi|224367518|ref|YP_002601681.1| putative ribosomal RNA methyltransferase 1 (23S rRNA methylase)
[Desulfobacterium autotrophicum HRM2]
gi|259494563|sp|C0QGP2.1|RLME_DESAH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|223690234|gb|ACN13517.1| putative ribosomal RNA methyltransferase 1 (23S rRNA methylase)
[Desulfobacterium autotrophicum HRM2]
Length = 203
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 27/174 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A+ Y ARS +KL++IQK++++IK G+SVLDLGCAPG+WL A + GP
Sbjct: 16 DHYTQKARDENYPARSVYKLMEIQKRFQVIKKGASVLDLGCAPGSWLIHAAELTGP---S 72
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VGID+K V +L +A T D+ + S A+ + + ++SDM P+ +G
Sbjct: 73 GRAVGIDLKPVDA-ALPPNAIAHT--GDIFEMESTLGEAVG---QDYDAVISDMAPATTG 126
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
DAA S L A+ +A G+L GG+ V K+ +
Sbjct: 127 RKDIDAARSFALCEAALRVAC------------------GLLADGGNFVCKIFQ 162
>gi|114321125|ref|YP_742808.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alkalilimnicola
ehrlichii MLHE-1]
gi|122311297|sp|Q0A769.1|RLME_ALHEH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|114227519|gb|ABI57318.1| 23S rRNA Um-2552 2'-O-methyltransferase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 209
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+AFKLL+IQ++ +LI+PG +V+DLG APG W QVA + +G +
Sbjct: 20 DHWVQQAQKAGYRSRAAFKLLEIQEKDRLIRPGMTVVDLGAAPGGWCQVAAELVG---DR 76
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G+V +D+ ++ +P +H + D Q + + + ++LSDM P++S
Sbjct: 77 GAVFALDILPMEALPGVHV------IQGDFTEEAPLQALLQALEGRPVDLVLSDMAPNLS 130
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G+ D ++ L A+D A VL+PGG + K+ +
Sbjct: 131 GVRVVDQPRAMYLAELALDFA------------------GQVLQPGGDFLTKVFHGE 169
>gi|421464901|ref|ZP_15913590.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens WC-A-157]
gi|400204830|gb|EJO35813.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
radioresistens WC-A-157]
Length = 199
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 19/150 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 7 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---DK 63
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q V++SDM P
Sbjct: 64 GLVIASDILPMDALADVTFLQGDFREEEVFEKLLNI-------LNGRQ--VDVVISDMAP 114
Query: 124 SVSGITTKDAALSV---ELGMRAVDLALGP 150
+ SG D + EL + V LGP
Sbjct: 115 NTSGNRAVDQPRQIYLCELALDFVQKVLGP 144
>gi|359430261|ref|ZP_09221273.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter sp.
NBRC 100985]
gi|358234311|dbj|GAB02812.1| ribosomal RNA large subunit methyltransferase E [Acinetobacter sp.
NBRC 100985]
Length = 216
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++Y++IKPG +V+DLG APG+W Q+A + +G
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYRMIKPGMTVVDLGAAPGSWSQIAGKLVGA---N 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILAMDALPDVTFLQGDFREEEVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>gi|15679761|ref|NP_276879.1| cell division protein J [Methanothermobacter thermautotrophicus
str. Delta H]
gi|9911011|sp|O27801.1|RLME_METTH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|2622903|gb|AAB86239.1| cell division protein J [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 211
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 13/143 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A++ Y +R+++KLLQ+ +YKLIK G VLDLG APG W QVA +G
Sbjct: 12 DHYYRSAKKENYRSRASYKLLQLNNKYKLIKKGDRVLDLGAAPGGWSQVALDKVG---EE 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCPS 124
G VV +D++++K P+ + A + D + + +R L + V++SD PS
Sbjct: 69 GLVVAVDLQRIKGFPAENFRA----IRGDFTDPEVKDKIIRELGGRA---DVVISDAAPS 121
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
+SGI D SV+L +D+A
Sbjct: 122 LSGIRDIDHLRSVDLVENVLDIA 144
>gi|225717054|gb|ACO14373.1| ribosomal RNA methyltransferase 2 [Esox lucius]
Length = 242
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 88/185 (47%), Gaps = 39/185 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ---SLGPL 64
D F + A Y RSAFKLL+I +YKL+KPG SV+D G APGAW QVA Q S G
Sbjct: 42 DPFVKAAHVHNYRCRSAFKLLEIDDKYKLLKPGFSVIDCGAAPGAWSQVAVQRVNSTGSY 101
Query: 65 DN--GGSVVGIDVKKVK-VPSLH----CDARVQTVSADVIN-LPSNQVRALSPKQKGFSV 116
+ G+VVGID++++ + H CD A ++ LP Q +
Sbjct: 102 EEFPRGTVVGIDLQRIAPLDGAHFLSNCDITDPVTHAKLLKLLPGGQAH----------I 151
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176
ILSDM P+ SG D + + + +DLA VL+PGG L+
Sbjct: 152 ILSDMAPNASGFKEMDHEKLITMSLSLMDLA------------------DKVLRPGGSLI 193
Query: 177 IKLLE 181
K +
Sbjct: 194 CKYWD 198
>gi|448354662|ref|ZP_21543417.1| 23S rRNA methyltransferase J [Natrialba hulunbeirensis JCM 10989]
gi|445636993|gb|ELY90149.1| 23S rRNA methyltransferase J [Natrialba hulunbeirensis JCM 10989]
Length = 272
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 14/152 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WL+VA +++GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDQLENVISGGDTVVDLGAAPGGWLEVAAEAVGPQ--- 61
Query: 68 GSVVGIDVKKVK-------VPSLHCDARVQTVSADVINL----PSNQVRALSPKQKGFSV 116
G V+G+D+++++ + +L D + VI S Q + V
Sbjct: 62 GQVIGVDLQRIRDFDDHDTIETLRGDMTEERTRERVIEAAGGDDSAQTGTATGTGGPVDV 121
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLAL 148
++SDM P++SG + D A S+ L +A + AL
Sbjct: 122 VISDMAPNMSGEYSLDQARSLHLARQAFETAL 153
>gi|50085896|ref|YP_047406.1| cell division protein [Acinetobacter sp. ADP1]
gi|81392452|sp|Q6F8N1.1|RLME_ACIAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|49531872|emb|CAG69584.1| cell division protein (filamentous temperature sensitivity, 23S
rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent)
[Acinetobacter sp. ADP1]
Length = 216
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++Y+LIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYRLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ + + +++SDM P
Sbjct: 81 GLVIASDILAMDTLPDVTFLQGDFREEEVFEKLLNILNGRT---------VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPDGQFVVKVFQ 171
>gi|448445168|ref|ZP_21590223.1| 23S rRNA methyltransferase J [Halorubrum saccharovorum DSM 1137]
gi|445685474|gb|ELZ37828.1| 23S rRNA methyltransferase J [Halorubrum saccharovorum DSM 1137]
Length = 274
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 97/184 (52%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY +R+++KL QI ++ L + G +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDEYYNRSKQQGYRSRASYKLKQIDEESDLFERGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + ++G ++SD
Sbjct: 58 VGGS---GTVVGVDLQRIDDLEEHD---VETIRGDMTEERTRHYLREAVGERGADAVISD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G D A SV L +A D+A +L PGG V+K+
Sbjct: 112 MAPNMTGEYALDHARSVHLARQAFDVA------------------EELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>gi|308448693|ref|XP_003087724.1| hypothetical protein CRE_21701 [Caenorhabditis remanei]
gi|308253263|gb|EFO97215.1| hypothetical protein CRE_21701 [Caenorhabditis remanei]
Length = 207
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 86/150 (57%), Gaps = 19/150 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ+++K+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKHKMIKPGMTVVDLGAAPGSWSQIAGKLVG---DK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V ++N+ + + V++SDM P
Sbjct: 81 GLVIASDILEMDALPDVTFLQGDFREEEVFEKLLNILNGRT---------VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLA---LGP 150
+ SG D + L A+D A LGP
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFANKVLGP 161
>gi|240849823|ref|YP_002971211.1| cell division protein FtsJ [Bartonella grahamii as4aup]
gi|240266946|gb|ACS50534.1| cell division protein FtsJ [Bartonella grahamii as4aup]
Length = 242
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 80/168 (47%), Gaps = 32/168 (19%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
GY +R+A+KL++I ++Y+ +K G V+DLG APG W QVA + +G D SVVGID
Sbjct: 55 GYRSRAAYKLIEINERYRFLKKGQKVIDLGAAPGGWCQVAERIVGSSDEDPSVVGIDY-- 112
Query: 78 VKVPSLHCD--ARVQTVSADVINL--PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA 133
LH D RV + D ++ P + L K V+LSDM +G D
Sbjct: 113 -----LHVDPLPRVAMLEMDFLHTDAPQKLIETLGTKP---DVVLSDMASPTTGHRQTDH 164
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++ L A D AL VLKPGGH + K +
Sbjct: 165 LRTIYLCEVAADFAL------------------SVLKPGGHFLAKAFQ 194
>gi|320352800|ref|YP_004194139.1| 23S rRNA Um2552-methyltransferase [Desulfobulbus propionicus DSM
2032]
gi|320121302|gb|ADW16848.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfobulbus propionicus
DSM 2032]
Length = 200
Score = 86.7 bits (213), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D+++++A++ Y ARS +KL + Q +YK +K G VLDLGC PG+W + + G +
Sbjct: 6 DYYFKKAKKDNYPARSVYKLEEAQLKYKFLKGGQRVLDLGCHPGSW---SLYTAGIVGEK 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+VV D+++ ++ + A + + DV + V L GF V+LSDM P +G
Sbjct: 63 GTVVAADLQRTEILTQKPHAEIHWLCYDVFS--EEFVDYLKQHWPGFHVVLSDMAPRTTG 120
Query: 128 ITTKDAALSVELGMRAVDLAL 148
D S+ L R ++L++
Sbjct: 121 SQYADHQQSLLLARRVLELSV 141
>gi|288932082|ref|YP_003436142.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ferroglobus placidus DSM
10642]
gi|288894330|gb|ADC65867.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ferroglobus placidus DSM
10642]
Length = 197
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 33/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A++ GY +R+A+KL QI ++++IK G VLDLG +PG W QVA + G
Sbjct: 6 DYYYWKAKKEGYRSRAAYKLKQINAKFEIIKKGYHVLDLGASPGGWSQVAVEL------G 59
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
VV +D+ +K V + D+ + ++R + K F V+L D P ++
Sbjct: 60 ADVVAVDLNPMKPIE-----GVVFIKGDITKEETKEEIRKIRDK---FDVVLCDASPKIT 111
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
G D LS+EL A D+A LKPGG+ V+KL + + +
Sbjct: 112 GKWDLDHFLSMELAKAAFDIA------------------KEFLKPGGNFVVKLFQGAELE 153
>gi|91773171|ref|YP_565863.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcoides
burtonii DSM 6242]
gi|121689250|sp|Q12WR3.1|RLME_METBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91712186|gb|ABE52113.1| ribosomal RNA large subunit methyltransferase [Methanococcoides
burtonii DSM 6242]
Length = 267
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 28/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY +R+A+KL QI +++++IK +++DLG APG WL+VA + +G
Sbjct: 7 DTYYWRAKDEGYRSRAAYKLFQINEKHEVIKEDDTIVDLGAAPGGWLEVAKKI-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G +VG+D++++K V+T+ D+ + + + + G V++ D P++SG
Sbjct: 62 GKIVGVDLRRIKEIE-----GVETIKGDITSDETIKKIIELVGEGGADVVICDAAPNLSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ D A S++L A++ A +LKP GH ++K+ +
Sbjct: 117 NWSLDHARSIDLTTSALECA------------------KKILKPKGHFIVKVFQ 152
>gi|384084057|ref|ZP_09995232.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
thiooxidans ATCC 19377]
Length = 219
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 91/176 (51%), Gaps = 33/176 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A + GY +R+A+KLL+IQ++ +LI+PG VLD+G APG W QVA +G
Sbjct: 17 DVFVQRAMKEGYRSRAAYKLLEIQEKDRLIRPGMRVLDVGAAPGGWTQVAAPLIG---RN 73
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPS 124
G +V +D L D A V + DV + R P +G +I+SDM P+
Sbjct: 74 GRLVAVD-------RLAMDPVADVTVICGDVYEDAVIAACREALP--EGADLIMSDMAPN 124
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
+SGI + D A +++L A+D+A L+PGG L+IK+
Sbjct: 125 MSGIASVDQARAIDLAELALDMA------------------QRWLRPGGSLLIKVF 162
>gi|319408132|emb|CBI81785.1| cell division protein ftsJ [Bartonella schoenbuchensis R1]
Length = 241
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK++K G ++DLG APG W QVA + +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKILKKGQKIIDLGAAPGGWCQVAARIVGSNDQR 104
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCP 123
SVVGID LH D V + D N P + AL K V+LSDM
Sbjct: 105 PSVVGIDY-------LHVDPLPGVVMLEMDFFHENAPQQLISALGAKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 155 PTTGHRQTDHLRTVYLCESAADFAI------------------SVLKPGGHFLAKTFQ 194
>gi|448356543|ref|ZP_21545276.1| 23S rRNA methyltransferase J [Natrialba chahannaoensis JCM 10990]
gi|445653576|gb|ELZ06447.1| 23S rRNA methyltransferase J [Natrialba chahannaoensis JCM 10990]
Length = 273
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 85/153 (55%), Gaps = 15/153 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A++ GY +R+A+KL Q+ + +I G +V+DLG APG WL+VA +++GP
Sbjct: 5 DHYYNKAKQEGYRSRAAYKLKQLDQLENVISGGDTVVDLGAAPGGWLEVAAEAVGPQ--- 61
Query: 68 GSVVGIDVKKVK-------VPSLHCDARVQTVSADVI-----NLPSNQVRALSPKQKGFS 115
G V+G+D+++++ + +L D + VI + S + +
Sbjct: 62 GQVIGVDLQRIRDFDDHDTIETLRGDMTEERTRERVIEAAGGDAESAETGTATGTGGPVD 121
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLAL 148
V++SDM P++SG + D A S+ L +A + AL
Sbjct: 122 VVISDMAPNMSGEYSLDQARSLHLARQAFETAL 154
>gi|345864622|ref|ZP_08816821.1| ribosomal RNA large subunit methyltransferase E [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345877969|ref|ZP_08829700.1| carbamoyl-phosphate synthase large chain [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225008|gb|EGV51380.1| carbamoyl-phosphate synthase large chain [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|345124319|gb|EGW54200.1| ribosomal RNA large subunit methyltransferase E [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 206
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 32/179 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+LGY +R+ FKLL+IQ++ +LIKPG V+DLG APG W QVA +G
Sbjct: 17 DEYVKRAQKLGYRSRAVFKLLEIQEKGRLIKPGMRVVDLGAAPGGWSQVARDLVG---EK 73
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVINL-PSNQVRALSPKQKGFSVILSDMCPS 124
G VV +D+ L D A V + D P Q+R + +++SDM P+
Sbjct: 74 GRVVALDI-------LEMDPIAGVTIIQGDFREEGPLAQLREQLAGEP-VDLVISDMAPN 125
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
V+G+ T D S+ L A+D A VL+PGG V+K+ + +
Sbjct: 126 VTGMVTVDQPRSMYLCELALDFA------------------KEVLRPGGGFVVKVFQGE 166
>gi|225716246|gb|ACO13969.1| ribosomal RNA methyltransferase 2 [Esox lucius]
Length = 242
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 87/185 (47%), Gaps = 39/185 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ---SLGPL 64
D F A Y RSAFKLL+I +YKL+KPG SV+D G APGAW QVA Q S G
Sbjct: 42 DPFVEAAHVHNYRCRSAFKLLEIDDKYKLLKPGFSVIDCGAAPGAWSQVAVQRVNSTGSY 101
Query: 65 DN--GGSVVGIDVKKVK-VPSLH----CDARVQTVSADVIN-LPSNQVRALSPKQKGFSV 116
+ G+VVGID++++ + H CD A ++ LP Q +
Sbjct: 102 EEFPRGTVVGIDLQRIAPLDGAHFLSNCDITDPVTHAKLLKLLPGGQAH----------I 151
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176
ILSDM P+ SG D + + + +DLA VL+PGG L+
Sbjct: 152 ILSDMAPNASGFKEMDHEKLITMSLSLMDLA------------------DKVLRPGGSLI 193
Query: 177 IKLLE 181
K +
Sbjct: 194 CKYWD 198
>gi|395778792|ref|ZP_10459304.1| ribosomal RNA large subunit methyltransferase E [Bartonella
elizabethae Re6043vi]
gi|423714894|ref|ZP_17689118.1| ribosomal RNA large subunit methyltransferase E [Bartonella
elizabethae F9251]
gi|395418000|gb|EJF84337.1| ribosomal RNA large subunit methyltransferase E [Bartonella
elizabethae Re6043vi]
gi|395430378|gb|EJF96420.1| ribosomal RNA large subunit methyltransferase E [Bartonella
elizabethae F9251]
Length = 240
Score = 86.3 bits (212), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL+++ ++YK +K G V+DLG APG W QVA + +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEMNERYKFLKKGQKVIDLGAAPGGWCQVAERIVGSSDEK 104
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
SVVGID LH D RV + D ++ P + L K V+LSDM
Sbjct: 105 PSVVGIDY-------LHVDPLPRVAMLEMDFLHADAPQKLIETLGTKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VLKPGGH + K +
Sbjct: 155 PTTGHRQTDHLRTIYLCEVAADFAL------------------SVLKPGGHFLAKAFQ 194
>gi|336476442|ref|YP_004615583.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanosalsum zhilinae
DSM 4017]
gi|335929823|gb|AEH60364.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanosalsum zhilinae
DSM 4017]
Length = 265
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 97/176 (55%), Gaps = 32/176 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY +R+++KL QI K++ +IK +V+DLG APG WLQVA + +G
Sbjct: 7 DRYYWLAKSDGYRSRASYKLQQINKKFNVIKRNDTVVDLGAAPGGWLQVAREL-----SG 61
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
G VVG+D++++K + S V T+ D+ + + N++ L + G V++ D P++
Sbjct: 62 GKVVGVDLRRIKPIES------VDTIKGDITSESTVNKILDLVGEH-GADVVICDAAPNM 114
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
SG + D A R++DLA NS +L+PGG+ V+K+ +
Sbjct: 115 SGNWSLDHA-------RSIDLA-----------NSAFECSQKILRPGGNFVVKVFQ 152
>gi|91775135|ref|YP_544891.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacillus
flagellatus KT]
gi|123380563|sp|Q1H387.1|RLME_METFK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91709122|gb|ABE49050.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methylobacillus
flagellatus KT]
Length = 207
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 26/173 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQR GY AR+A+KLL+I + +LIKPG +++DLG APG+W QVA Q L
Sbjct: 17 DEFVKRAQRDGYRARAAYKLLEIDDKDQLIKPGMTIVDLGSAPGSWSQVAVQRLA---GQ 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ +D+ +++P + V+ + D V S K ++++DM P++SG
Sbjct: 74 GRVIALDI--LEMPPIPG---VEFIQGDFREEEILLVLEKSLNGKPVDLVIADMAPNISG 128
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
I+ D A + L V+LAL LKPGG+ ++K+
Sbjct: 129 ISDVDQARAAYL----VELAL--------------EFSREWLKPGGNFLVKVF 163
>gi|304314116|ref|YP_003849263.1| 23 S ribosomal RNA methyltransferase [Methanothermobacter
marburgensis str. Marburg]
gi|302587575|gb|ADL57950.1| predicted 23 S ribosomal RNA methyltransferase [Methanothermobacter
marburgensis str. Marburg]
Length = 211
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y+ A+R Y +R+++KLLQ+ +Y+LI+ G VLDLG APG W QVA + +G
Sbjct: 12 DHYYKSAKRENYRSRASYKLLQLNNRYRLIRKGYRVLDLGAAPGGWSQVALEKVG---EE 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++++K P + A + D + P+ + R + V++SD PS+S
Sbjct: 69 GLVVAVDLQRIKGFPVENFRA----IMGDFTD-PAIKERIIEELGGRADVVISDAAPSLS 123
Query: 127 GITTKDAALSVELGMRAVDLA 147
GI D SV+L +D+A
Sbjct: 124 GIRDIDHLRSVDLVENVLDIA 144
>gi|395792525|ref|ZP_10471952.1| ribosomal RNA large subunit methyltransferase E [Bartonella
vinsonii subsp. arupensis Pm136co]
gi|395432498|gb|EJF98484.1| ribosomal RNA large subunit methyltransferase E [Bartonella
vinsonii subsp. arupensis Pm136co]
Length = 240
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 84/183 (45%), Gaps = 42/183 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G ++DLG APG W QVA + +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQVAVRVVGSNDQK 104
Query: 68 GSVVGIDVKKV---------KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
SVVGID V K+ LH DA P + AL K V+L
Sbjct: 105 PSVVGIDYLHVNPLPGVVMLKMDFLHADA------------PQKLIDALGEKP---DVVL 149
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM +G D +V L A D AL VLKPGGH + K
Sbjct: 150 SDMAAPTTGHRQTDHLRTVYLCEVAADFAL------------------SVLKPGGHFLAK 191
Query: 179 LLE 181
+
Sbjct: 192 AFQ 194
>gi|150401023|ref|YP_001324789.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus aeolicus
Nankai-3]
gi|189040311|sp|A6UUK5.1|RLME_META3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|150013726|gb|ABR56177.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus aeolicus
Nankai-3]
Length = 269
Score = 85.9 bits (211), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y+ A++ Y +R+++KLLQ+ +++++I G +V+DLGCAPG WLQ + +G
Sbjct: 15 DFYYKLAKQNHYRSRASYKLLQLNEKFEIIYEGDNVVDLGCAPGGWLQASYDLVGE---D 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G V+G+D++KVK + + + D+ + N++ L P + V++ D P++S
Sbjct: 72 GFVIGVDLQKVKPLR---EENIVAIQGDMTKKETINKIIDLMPSKA--DVVICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAV 144
G+ D + S+EL + A+
Sbjct: 127 GVWEVDHSRSIELSLMAL 144
>gi|372489670|ref|YP_005029235.1| 23S rRNA methylase [Dechlorosoma suillum PS]
gi|359356223|gb|AEV27394.1| 23S rRNA methylase [Dechlorosoma suillum PS]
Length = 210
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 83/144 (57%), Gaps = 16/144 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F A+ G+ +R++FKLL+I + KL+KPG V+DLG APG W QVA Q +G G
Sbjct: 17 DHFVHRAKAEGWRSRASFKLLEIDDKDKLLKPGEVVVDLGAAPGGWCQVAVQRVG---EG 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V ID+ +++ V + D R ++V L + R L+ +Q G ++LSDM P
Sbjct: 74 GKVFAIDLLEMQGIAGVDFMQGDFREESV------LREFESR-LAGRQVG--LVLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLA 147
++SG+ D A S+ L A++ A
Sbjct: 125 NISGVNVSDQARSIYLCELALEFA 148
>gi|153003960|ref|YP_001378285.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp.
Fw109-5]
gi|189044084|sp|A7H9A5.1|RLME_ANADF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|152027533|gb|ABS25301.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp.
Fw109-5]
Length = 276
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 9/141 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+YR+A++ G ARSAFK+ +I ++++L++ G +VLDLG APG +LQ+ +G
Sbjct: 9 DFYYRKAKKEGLRARSAFKIDEILRRHRLLRKGQAVLDLGAAPGGFLQILADEVG---ET 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G VG+D++ V+ V+T D+++ + +Q+R L F ++ SDM P
Sbjct: 66 GVAVGVDLEPVRRLGKPW---VKTAIVDLLSPGALDQIRTLHAGP--FQLVTSDMAPKTI 120
Query: 127 GITTKDAALSVELGMRAVDLA 147
G+ D A S+EL A+D+A
Sbjct: 121 GVKITDEARSLELVRMALDVA 141
>gi|423713186|ref|ZP_17687446.1| ribosomal RNA large subunit methyltransferase E [Bartonella
vinsonii subsp. arupensis OK-94-513]
gi|52355215|gb|AAU44782.1| FtsJ [Bartonella vinsonii subsp. arupensis]
gi|395423842|gb|EJF90031.1| ribosomal RNA large subunit methyltransferase E [Bartonella
vinsonii subsp. arupensis OK-94-513]
Length = 240
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 84/183 (45%), Gaps = 42/183 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G ++DLG APG W QVA + +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQVAVRVVGSNDQK 104
Query: 68 GSVVGIDVKKV---------KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
SVVGID V K+ LH DA P + AL K V+L
Sbjct: 105 PSVVGIDYLHVNPLPGVVMLKMDFLHADA------------PQKLIDALGEKP---DVVL 149
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM +G D +V L A D AL VLKPGGH + K
Sbjct: 150 SDMAAPTTGHRQTDHLRTVYLCEVAADFAL------------------SVLKPGGHFLAK 191
Query: 179 LLE 181
+
Sbjct: 192 AFQ 194
>gi|451940316|ref|YP_007460954.1| cell division protein ftsJ [Bartonella australis Aust/NH1]
gi|451899703|gb|AGF74166.1| cell division protein ftsJ [Bartonella australis Aust/NH1]
Length = 242
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 80/168 (47%), Gaps = 32/168 (19%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
GY +R+A+KL++I ++YK+ K G ++DLG APG W QVA +G D SVVGID
Sbjct: 55 GYRSRAAYKLIEIDERYKIFKKGQKIIDLGAAPGGWCQVAACIVGSSDQKPSVVGIDY-- 112
Query: 78 VKVPSLHCDAR--VQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA 133
LH D V + D + N P +RAL K ++LSDM +G D
Sbjct: 113 -----LHVDPLPGVVMLEMDFLHENAPQELMRALGTKP---DIVLSDMAAPTTGHRQTDH 164
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++ L A D A+ VLKPGGH + K +
Sbjct: 165 LRTIYLCEAAADFAI------------------SVLKPGGHFLTKTFQ 194
>gi|349574004|ref|ZP_08885966.1| ribosomal RNA large subunit methyltransferase J [Neisseria
shayeganii 871]
gi|348014404|gb|EGY53286.1| ribosomal RNA large subunit methyltransferase J [Neisseria
shayeganii 871]
Length = 212
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ GY AR+A+KLL+I ++ KLIKPG+ V DLG APG+W QVA + G
Sbjct: 22 DPYVHQAQKDGYRARAAYKLLEINEKDKLIKPGTVVADLGSAPGSWSQVAAKLAG---KK 78
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ ++ V + D R V A++ L + +++ DM P
Sbjct: 79 GRVFALDILPMEPVEGVSFIQGDFREDAVLAELEALLDG---------RSLDLVICDMAP 129
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A + LKPGGHL++K+ +
Sbjct: 130 NMSGHAVSDQARSYHLCELALDFA------------------ANHLKPGGHLLVKVFQ 169
>gi|163867451|ref|YP_001608650.1| cell division protein ftsJ [Bartonella tribocorum CIP 105476]
gi|189044086|sp|A9IMA1.1|RLME_BART1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|161017097|emb|CAK00655.1| cell division protein ftsJ [Bartonella tribocorum CIP 105476]
Length = 242
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G V+DLG APG W QVA + +G +
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQVAERIVGSSNEK 104
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
SVVGID LH D RV + D ++ P + L K V+LSDM
Sbjct: 105 PSVVGIDY-------LHVDPLPRVAMLEMDFLHADAPQKLIETLGTKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VLKPGGH + K +
Sbjct: 155 PTTGHRQTDHLRTIYLCEVAADFAL------------------SVLKPGGHFLAKAFQ 194
>gi|222445937|ref|ZP_03608452.1| hypothetical protein METSMIALI_01585 [Methanobrevibacter smithii
DSM 2375]
gi|222435502|gb|EEE42667.1| ribosomal RNA large subunit methyltransferase J [Methanobrevibacter
smithii DSM 2375]
Length = 217
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 37/180 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y++A++ Y +R+++K+ Q+ K++KLIK G +V+DLG APG W QVA + +G
Sbjct: 12 DPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVALEKVG---EE 68
Query: 68 GSVVGIDVKKVK------VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G V+G+D+ ++K + D V V+NL + + VI+SD
Sbjct: 69 GLVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAK----------VIISDA 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
PS+ GI D S++L + +A +L+P G+LV+K+ +
Sbjct: 119 SPSLCGIKNIDQLRSIDLTNTVIGIA------------------DNILEPKGNLVMKVFQ 160
>gi|386395904|ref|ZP_10080682.1| 23S rRNA methylase [Bradyrhizobium sp. WSM1253]
gi|385736530|gb|EIG56726.1| 23S rRNA methylase [Bradyrhizobium sp. WSM1253]
Length = 228
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+ LGY +R+AFKLL+I +Y+L+K G +V+DLG APG W Q+A + +G +D
Sbjct: 33 DPYVVKAKALGYRSRAAFKLLEIDDKYRLLKHGMAVVDLGAAPGGWSQIAAKRVGSVDGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ ID+ +++P + A V+ D + N ++++A+ G +++SDM + +
Sbjct: 93 GKVIAIDL--LEIPEI---AGVEFAQLDFMDNDAPDKLKAML--DGGADIVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L AA A VLKPGG + K +S
Sbjct: 146 GHRKTDQ-------LRIVGLIETAAAFACD-----------VLKPGGTFLAKAFQS 183
>gi|217970150|ref|YP_002355384.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thauera sp. MZ1T]
gi|217507477|gb|ACK54488.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thauera sp. MZ1T]
Length = 207
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 30/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ GY AR+AFKLL+I ++ L++PG+ V+DLG APG+W Q+A + GP
Sbjct: 17 DPWVQRAQAEGYRARAAFKLLEIDERDHLLRPGAVVVDLGAAPGSWCQLAVKRCGP---K 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS--VILSDMCPSV 125
G + +D+ ++ P + + + D + + L + G S V+LSDM P++
Sbjct: 74 GRIFALDLLPME-PVAGVEFLLGDFTEDAV------LEELEARLGGASVDVVLSDMAPNL 126
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
SG+ T D A SV L A+D A+ LKPGG V+K+ + +
Sbjct: 127 SGVATVDQARSVHLCELALDFAVRH------------------LKPGGQFVVKVFQGE 166
>gi|242280349|ref|YP_002992478.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio salexigens
DSM 2638]
gi|259494562|sp|C6C068.1|RLME_DESAD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|242123243|gb|ACS80939.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio salexigens
DSM 2638]
Length = 199
Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 25/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +++ A++ Y ARS +KL ++ K++K+ G +V+DLG APG+W A + +G +
Sbjct: 6 DHYFKRAKKENYPARSVYKLQELDKRFKVFAKGQNVMDLGAAPGSWTLFAAKKVG---DT 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ +D++ +Q ADV S ++ A KQ + +I+SDM P +G
Sbjct: 63 GRVLAVDIQSTDTAFPDNATFLQ---ADVFE-DSPELLAAMDKQLPYDLIISDMAPKTTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
+ D A S+EL RA D+ P+ LK GGH ++K+ + D +
Sbjct: 119 VKFADQANSLELCERARDIV--PSR----------------LKQGGHFIVKIFDGPDVK 159
>gi|395782636|ref|ZP_10463022.1| ribosomal RNA large subunit methyltransferase E [Bartonella
rattimassiliensis 15908]
gi|395417373|gb|EJF83712.1| ribosomal RNA large subunit methyltransferase E [Bartonella
rattimassiliensis 15908]
Length = 242
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
GY +R+A+KL++I ++YK +K G V+DLG APG W QV + +G D SVVGID
Sbjct: 55 GYRSRAAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQVVERIVGSSDEKPSVVGIDY-- 112
Query: 78 VKVPSLHCD--ARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA 133
LH D RV + D + N P ++ L K V+LSDM G D
Sbjct: 113 -----LHVDPLPRVAMLEMDFLHANAPHKLIKTLGTKP---DVVLSDMAAPTIGHRQTDH 164
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++ L A D +L VLKPGGH + K +
Sbjct: 165 LRTIYLCEVAADFSL------------------SVLKPGGHFLAKAFQ 194
>gi|148642568|ref|YP_001273081.1| cell division protein J (23S rRNA methylase), FtsJ
[Methanobrevibacter smithii ATCC 35061]
gi|158513776|sp|A5UKI5.1|RLME_METS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|148551585|gb|ABQ86713.1| cell division protein J (23S rRNA methylase), FtsJ
[Methanobrevibacter smithii ATCC 35061]
Length = 210
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 37/180 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y++A++ Y +R+++K+ Q+ K++KLIK G +V+DLG APG W QVA + +G
Sbjct: 12 DPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVALEKVG---EE 68
Query: 68 GSVVGIDVKKVK------VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G V+G+D+ ++K + D V V+NL + + V++SD
Sbjct: 69 GLVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAK----------VVISDA 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
PS+ GI D S++L + +A +L+P G+LV+K+ +
Sbjct: 119 SPSLCGIKNIDQLRSIDLTNTVIGIA------------------DNILEPKGNLVMKVFQ 160
>gi|407011731|gb|EKE26278.1| hypothetical protein ACD_4C00347G0001 [uncultured bacterium (gcode
4)]
Length = 204
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 10/142 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y EA++L Y ARS FKLL+IQ+++ LI+P +VLD+ AP ++LQ + +G +
Sbjct: 14 DKYYHEAKKLWYRARSVFKLLEIQEKFNLIRPNYNVLDVWAAPWSFLQAIRKIIG---DS 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQT--VSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
+VGID++K++ + +Q + + N V K F VI SD+ PS
Sbjct: 71 WKIVGIDIQKIERFPFNNIFLLQESIFEKEKVTEFINSVWI-----KEFDVITSDIAPST 125
Query: 126 SGITTKDAALSVELGMRAVDLA 147
+G T D SVEL + +D+A
Sbjct: 126 TGQTWVDQYRSVELNLAILDVA 147
>gi|261349524|ref|ZP_05974941.1| ribosomal RNA large subunit methyltransferase J [Methanobrevibacter
smithii DSM 2374]
gi|288861888|gb|EFC94186.1| ribosomal RNA large subunit methyltransferase J [Methanobrevibacter
smithii DSM 2374]
Length = 207
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 37/180 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y++A++ Y +R+++K+ Q+ K++KLIK G +V+DLG APG W QVA + +G
Sbjct: 12 DPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVALEKVG---EE 68
Query: 68 GSVVGIDVKKVK------VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G V+G+D+ ++K + D V V+NL + + V++SD
Sbjct: 69 GLVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAK----------VVISDA 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
PS+ GI D S++L + +A +L+P G+LV+K+ +
Sbjct: 119 SPSLCGIKNIDQLRSIDLTNTVIGIA------------------DNILEPKGNLVMKVFQ 160
>gi|288559850|ref|YP_003423336.1| ribosomal RNA large subunit methyltransferase J RrmJ
[Methanobrevibacter ruminantium M1]
gi|288542560|gb|ADC46444.1| ribosomal RNA large subunit methyltransferase J RrmJ
[Methanobrevibacter ruminantium M1]
Length = 213
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 19/146 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ Y +R+++KL Q+ K+YK+IK G++V+DLG APG W QVA + +G
Sbjct: 12 DPYYRRAKSEEYRSRASYKLKQLDKKYKIIKEGNTVVDLGAAPGGWSQVALEKVG---EE 68
Query: 68 GSVVGIDVKKVK-VPS-----LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G VVG+D+ ++K P + D + V ++ L + + + V++SD
Sbjct: 69 GIVVGVDLNRIKPFPEKNFYGIRGDFTKEIVQDKIMELTNGKAK----------VLISDA 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLA 147
PS++GI T D SV+L + +A
Sbjct: 119 APSLTGIKTIDHLNSVDLVETVIKIA 144
>gi|134046035|ref|YP_001097521.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
maripaludis C5]
gi|189040313|sp|A4FYM2.1|RLME_METM5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|132663660|gb|ABO35306.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanococcus maripaludis
C5]
Length = 258
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ Y +R+ +KL Q+ +++ LIK + V+DLGCAPG WLQ A +G +
Sbjct: 15 DHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVG---DK 71
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID++ VK +P + A ++ + I Q R L P++ VI+ D P++S
Sbjct: 72 GFIVGIDLQTVKPLPYENVIAIKGDMTKEEI---LKQARDLLPEKP--DVIICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D A S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 127 GVWDVDHARSLELTTMAL------------------MTATKMLKKGGNFVVKVFQ 163
>gi|94264071|ref|ZP_01287870.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [delta proteobacterium
MLMS-1]
gi|93455487|gb|EAT05677.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [delta proteobacterium
MLMS-1]
Length = 199
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 28/181 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY ARS +KL++ Q++++L++PG VLDLGC PG W A + +G
Sbjct: 6 DHYYHRAKKEGYPARSVYKLIEAQQKFRLLRPGDRVLDLGCQPGGWSMFAAEQVGAR--- 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILSDMCPSV 125
G VVG+D+ + A V D IN S +VR ++P ++V+LSDM P
Sbjct: 63 GLVVGVDLNPGPIRP-RKGAPFHFVLGD-INRESVLARVREITPD---YTVLLSDMAPRT 117
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
+G D S+ L + LA +L GG+ K+ E +D
Sbjct: 118 TGNRWADQQQSLRLAREVLRLA------------------GELLAAGGNFYCKVFEGEDF 159
Query: 186 Q 186
Q
Sbjct: 160 Q 160
>gi|297618952|ref|YP_003707057.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus voltae A3]
gi|297377929|gb|ADI36084.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus voltae A3]
Length = 298
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 90/176 (51%), Gaps = 29/176 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y A++ Y +R+ +KL Q+ +++ IK + V+DLGCAPG WLQ A + +G
Sbjct: 15 DFYYNLAKKNQYRSRATYKLFQLNEKFNFIKEDNVVIDLGCAPGGWLQSAREIVGE---D 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQV--RALSPKQKGFSVILSDMCPSV 125
G VVGID++KVK L D V + D + +V ALS + VI+ D P+V
Sbjct: 72 GFVVGIDLQKVK--PLKYD-NVVAIKGD---MTKEEVLKEALSYLPRNPDVIICDASPNV 125
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
SG+ D S L L AL T + VLK GG+ V+K+ +
Sbjct: 126 SGVWDVDHTCS---------LILTTMALM---------TSTRVLKRGGNFVVKVFQ 163
>gi|398864711|ref|ZP_10620242.1| 23S rRNA methylase [Pseudomonas sp. GM78]
gi|398244662|gb|EJN30205.1| 23S rRNA methylase [Pseudomonas sp. GM78]
Length = 209
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q++YKLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMTVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V A +++ N SP +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTQDEVLAQILDAVGN-----SP----VDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D ++ L A+DLA + +LKPGG+ VIK+ + +
Sbjct: 125 NMSGTPAVDMPKAMFLCELALDLA------------------ARILKPGGNFVIKVFQGE 166
>gi|374704245|ref|ZP_09711115.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. S9]
Length = 207
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+++ D+ ++ V + D V A +++ N +P +++SDM P
Sbjct: 74 GTLIASDILEMDSIPDVTFIQGDFTEDDVFAQILDAIGN-----NP----VDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ T D A ++ L A+DL+ + VLKPGG +IK+ + +
Sbjct: 125 NMSGVRTADQARAMYLCELALDLS------------------ARVLKPGGDFLIKIFQGE 166
>gi|374286929|ref|YP_005034014.1| 23S rRNA methyltransferase [Bacteriovorax marinus SJ]
gi|301165470|emb|CBW25041.1| 23S rRNA methyltransferase [Bacteriovorax marinus SJ]
Length = 197
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 25/184 (13%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D ++++A++ ++ARS +KL +I ++K+I G V+D G PG+W+Q + +G
Sbjct: 2 GFKVQDHYFKKAKKDDFLARSVYKLEEIDSKFKIINKGDQVVDFGYHPGSWVQYTSRRVG 61
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
G V+GID++ + L V D+ ++ + K F V+LSDM
Sbjct: 62 A---EGKVIGIDIRPLNKKLLTL-KNVTLFEKDIFDVDTTSQLGADNK---FDVVLSDMA 114
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+ +GI + D S+ L + ++ PV LK G++VIK+ +S
Sbjct: 115 PNTTGIRSVDQDRSLNLVEKVFEVL--------PV----------FLKENGNMVIKVFDS 156
Query: 183 QDAQ 186
AQ
Sbjct: 157 HQAQ 160
>gi|347819407|ref|ZP_08872841.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 229
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 95/183 (51%), Gaps = 38/183 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQ-----VACQSLG 62
D + + A++ GY AR+A+KL ++ +Q LI+PG +V+DLGC PGAW Q +A + G
Sbjct: 21 DPYVKLARKEGYRARAAYKLQEMDEQLGLIRPGYTVVDLGCTPGAWSQYLRRRMAAGAAG 80
Query: 63 PLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
PLD G+++ +D+ ++ V LH D R + + +AL+ +G V++
Sbjct: 81 PLD--GTIIALDILPMQPIEGVTYLHGDFRAPEMRERL-------EQALN--GRGVDVVV 129
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SGI + DAA +L A+D A LKP G LV K
Sbjct: 130 SDMAPNLSGIGSADAARMAQLVELALDFACKH------------------LKPEGALVAK 171
Query: 179 LLE 181
L
Sbjct: 172 LFH 174
>gi|451941441|ref|YP_007462078.1| cell division protein ftsJ [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451900828|gb|AGF75290.1| cell division protein ftsJ [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 242
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 83/183 (45%), Gaps = 42/183 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G ++DLG APG W QVA +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQVAVGIVGSSDQK 104
Query: 68 GSVVGIDVKKV---------KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
SVVGID V K+ LH DA P + AL K V+L
Sbjct: 105 TSVVGIDYLHVNPLPGVVMLKMDFLHADA------------PQKLIDALRAKP---DVVL 149
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM +G D +V L A D AL VLKPGGH + K
Sbjct: 150 SDMAAPTTGHRQTDHLKTVYLCEVAADFAL------------------SVLKPGGHFLAK 191
Query: 179 LLE 181
+
Sbjct: 192 AFQ 194
>gi|296112663|ref|YP_003626601.1| FtsJ-like methyltransferase [Moraxella catarrhalis RH4]
gi|416155926|ref|ZP_11604219.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
101P30B1]
gi|416217070|ref|ZP_11624019.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
7169]
gi|416220266|ref|ZP_11625358.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
103P14B1]
gi|416228508|ref|ZP_11627662.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
46P47B1]
gi|416233476|ref|ZP_11629305.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
12P80B1]
gi|416237147|ref|ZP_11630669.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC1]
gi|416242014|ref|ZP_11633148.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC7]
gi|416247226|ref|ZP_11635532.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC8]
gi|416250022|ref|ZP_11637031.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
CO72]
gi|416254106|ref|ZP_11638540.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
O35E]
gi|421779483|ref|ZP_16215975.1| FtsJ-like methyltransferase [Moraxella catarrhalis RH4]
gi|295920357|gb|ADG60708.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BBH18]
gi|326560921|gb|EGE11286.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
7169]
gi|326563843|gb|EGE14094.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
46P47B1]
gi|326566515|gb|EGE16661.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
12P80B1]
gi|326566854|gb|EGE16993.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
103P14B1]
gi|326569819|gb|EGE19869.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC8]
gi|326571269|gb|EGE21291.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC1]
gi|326571575|gb|EGE21590.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
BC7]
gi|326575145|gb|EGE25073.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
CO72]
gi|326576769|gb|EGE26676.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
101P30B1]
gi|326577555|gb|EGE27432.1| FtsJ-like methyltransferase family protein [Moraxella catarrhalis
O35E]
gi|407813193|gb|EKF83975.1| FtsJ-like methyltransferase [Moraxella catarrhalis RH4]
Length = 210
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 34/183 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+ ++AQ+ GY AR+A+KLL+I ++ LIK G +V+DLG APG+W QVA Q +G +
Sbjct: 24 DFYVQKAQKEGYRARAAYKLLEINEKTGLIKKGMTVVDLGSAPGSWSQVAGQLVG---DA 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+++ D+ + V + D R + V ++N + V+LSDM P
Sbjct: 81 GTLIASDILPMDTLENVIFIQGDFREEAVFNQIMNEVGG---------RAVDVVLSDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SG+ D + L AVD AL VL GG L++K+ + +
Sbjct: 132 NTSGMAAVDQPRMMYLCELAVDFAL------------------KVLPVGGALIMKVFQGE 173
Query: 184 DAQ 186
+Q
Sbjct: 174 GSQ 176
>gi|292611954|ref|XP_683228.2| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Danio
rerio]
Length = 259
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 86/181 (47%), Gaps = 31/181 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A Y RSAFKL+++ +Y+L+KPG +V+D G APGAW QVA Q +
Sbjct: 60 DPFVKAAHEQNYRCRSAFKLIEMDDKYRLLKPGFTVIDCGAAPGAWSQVAVQRVNSTGES 119
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSD 120
GSV+GID+ + D Q ++ I PS + L P + G VILSD
Sbjct: 120 VDLPKGSVIGIDILHI----FPLDG-AQFLTNHDITSPSTHTALERLLP-EAGADVILSD 173
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+ SG D V + + +DLA VL+PGG L+ K
Sbjct: 174 MAPNASGFRELDHERLVSMCLSMLDLA------------------DKVLRPGGSLICKYW 215
Query: 181 E 181
+
Sbjct: 216 D 216
>gi|92118062|ref|YP_577791.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter hamburgensis
X14]
gi|122417455|sp|Q1QKB6.1|RLME_NITHX RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91800956|gb|ABE63331.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrobacter hamburgensis
X14]
Length = 228
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R G+ +R+A+KL+++ +Y +KPG +V+DLG APG W QVA + +G +D
Sbjct: 33 DPYVAQAKRDGWRSRAAYKLIEMDDKYHFLKPGLAVVDLGAAPGGWSQVAARRVGAVDGK 92
Query: 68 GSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV ID+ +++P + AR+ + AD P + + + G ++LSDM +
Sbjct: 93 GKVVAIDL--LEMPEIVGVTFARLDFLDADA---PEKLIAMM---EGGADIVLSDMAANT 144
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+G D +R + L AA A+ VL+PGG + K+ +S
Sbjct: 145 TGHRKTDQ-------LRIIGLVESAAAFAAD-----------VLRPGGTFIAKVFQS 183
>gi|408382417|ref|ZP_11179961.1| 23S rRNA methyltransferase J [Methanobacterium formicicum DSM 3637]
gi|407814772|gb|EKF85395.1| 23S rRNA methyltransferase J [Methanobacterium formicicum DSM 3637]
Length = 206
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 27/175 (15%)
Query: 10 FYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS 69
+Y++A++ Y +R++FKLLQ+ ++YK+IK G SV+DLG APG W QVA ++ G G
Sbjct: 13 YYKKAKQQDYRSRASFKLLQLNRKYKIIKKGDSVVDLGAAPGGWSQVALEATG---EDGL 69
Query: 70 VVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGI 128
VV +D+ ++K + ++ D + + +++R Q VI+SD P +SGI
Sbjct: 70 VVAVDLNRIKS---FPEENFWSIKGDFTHEETLDEIRRTL--QGKAQVIISDAAPKLSGI 124
Query: 129 TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
D +R++DLA + + SDS +LK G++++K+ + +
Sbjct: 125 KDLDQ-------LRSIDLA------RTVLQISDS-----ILKYKGNMIMKVFQGE 161
>gi|436843100|ref|YP_007327478.1| Ribosomal RNA large subunit methyltransferase E [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432172006|emb|CCO25379.1| Ribosomal RNA large subunit methyltransferase E [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 199
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 25/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ Y ARS +KL ++ K++K++ G +V+DLG APG+W A + +G +
Sbjct: 6 DHYFKKAKKDNYPARSVYKLQELDKRFKILAKGQNVMDLGAAPGSWTLFAAKKVG---DE 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++ + ADV + S ++ A Q + +I+SDM P SG
Sbjct: 63 GRVLGVDIQSTDT---EFPPNATFLQADVF-VDSPELLAAMDMQLPYDLIISDMAPKTSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
+ D S+EL RA D+ P+ LK GG+ V+K+ E D +
Sbjct: 119 VKFADQVNSLELCERARDIL--PSR----------------LKKGGNFVVKIFEGPDVR 159
>gi|395761985|ref|ZP_10442654.1| 23S rRNA methyltransferase J [Janthinobacterium lividum PAMC 25724]
Length = 227
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 32/177 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I + KLIKPG ++DLGC PG+W Q A + L D G
Sbjct: 17 DPYVKLAQKEGYRARAAYKLKEIDEDEKLIKPGQVIVDLGCTPGSWAQYARRKLAGKDGG 76
Query: 68 ---GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV--ILSDM 121
G+++G+D+ +++ + H + D + +R L +G V +LSDM
Sbjct: 77 GVNGTLIGLDMLEMEPIADFHF------IQGDF--REARVLRQLEVVLQGRKVDLVLSDM 128
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
P++SGI T DAA L +DLAL + L LKP G L++K
Sbjct: 129 APNLSGIATADAARMEHL----IDLALEFSQLH--------------LKPSGVLLVK 167
>gi|374574891|ref|ZP_09647987.1| 23S rRNA methylase [Bradyrhizobium sp. WSM471]
gi|374423212|gb|EHR02745.1| 23S rRNA methylase [Bradyrhizobium sp. WSM471]
Length = 229
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 25/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+ LGY +R+AFKLL+I +Y+L+K G +V+DLG APG W Q+A + +G +D
Sbjct: 33 DPYVVKAKALGYRSRAAFKLLEIDDKYRLLKHGMAVVDLGAAPGGWSQIAAKRVGSVDGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ ID+ +++P + A V+ D + N +++A+ G V++SDM + +
Sbjct: 93 GKVIAIDL--LEIPEI---AGVEFAQLDFMDNDAPGKLKAMLD-GGGADVVMSDMAANTT 146
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L AA A VLKPGG + K +S
Sbjct: 147 GHRKTDQ-------LRIVGLIETAAAFACD-----------VLKPGGTFLAKAFQS 184
>gi|398855339|ref|ZP_10611835.1| 23S rRNA methylase [Pseudomonas sp. GM80]
gi|398232024|gb|EJN18003.1| 23S rRNA methylase [Pseudomonas sp. GM80]
Length = 209
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q++YKLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ERILKPGGNFVIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|159904677|ref|YP_001548339.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
maripaludis C6]
gi|226703310|sp|A9A6B9.1|RLME_METM6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|159886170|gb|ABX01107.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
maripaludis C6]
Length = 258
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ Y +R+ +KL Q+ +++ LIK + V+DLGCAPG WLQ A +G +
Sbjct: 15 DHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVG---DK 71
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID++ VK +P + A ++ + I Q R L P++ VI+ D P++S
Sbjct: 72 GFIVGIDLQTVKPLPYENVIAIKGDMTKEEI---LKQARDLLPEKP--DVIICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D A S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 127 GVWDVDHARSLELTTMAL------------------MTATKMLKRGGNFVVKVFQ 163
>gi|448498381|ref|ZP_21610814.1| 23S rRNA methyltransferase J [Halorubrum coriense DSM 10284]
gi|445698802|gb|ELZ50841.1| 23S rRNA methyltransferase J [Halorubrum coriense DSM 10284]
Length = 261
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y +++ GY ARSA+KL Q+ ++ L+ G +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDDYYNRSKQQGYRARSAYKLKQLDEEADLLASGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D+++++ +A V+T+ D+ + + ++G V+ SD
Sbjct: 58 VGEG---GTVVGVDLQRIEALD---EADVETIRGDMTEERTRHYLREAVGERGADVVASD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G + D A SV L +A+D A +L GG V+K+
Sbjct: 112 MAPNMTGEYSLDHARSVHLARQALDTA------------------DELLATGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>gi|340623858|ref|YP_004742311.1| ribosomal RNA large subunit methyltransferase E [Methanococcus
maripaludis X1]
gi|339904126|gb|AEK19568.1| ribosomal RNA large subunit methyltransferase E [Methanococcus
maripaludis X1]
Length = 258
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 91/175 (52%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+R Y +R+ +KL Q+ +++ LIK + V+DLGCAPG WLQ A +G +
Sbjct: 15 DHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVG---DN 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID++ VK P H + V + D+ Q + L P++ VI+ D P++S
Sbjct: 72 GFIVGIDLQTVK-PLPHDN--VIAIKGDMTKEEILKQAKDLLPEKP--DVIICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 127 GVWDVDHVRSLELTTMAL------------------MTATKMLKKGGNFVVKVFQ 163
>gi|304310499|ref|YP_003810097.1| cell division protein FtsJ [gamma proteobacterium HdN1]
gi|301796232|emb|CBL44440.1| Cell division protein FtsJ [gamma proteobacterium HdN1]
Length = 206
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+A+KLL+IQ++ +++K G +VLDLG APG W QVA + +G +
Sbjct: 17 DPYVKKAQQDGYRSRAAYKLLEIQEKDRILKQGMTVLDLGAAPGGWSQVAARYVG---DA 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D ++ V L D + V A ++ + N +G +++SDM P
Sbjct: 74 GHVIASDRLEMDPLYGVDFLQGDFCEEEVFAKLLQMTGN---------RGIDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + A+ M V+LAL A + VLKPGG L++K+ + +
Sbjct: 125 NMSG----NRAVDQPRAMYLVELALDMA--------------TRVLKPGGSLLVKVFQGE 166
>gi|407893861|ref|ZP_11152891.1| 23S rRNA methyltransferase J [Diplorickettsia massiliensis 20B]
Length = 208
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 91/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ G +RSA+KLL++Q++YKLIKPG +V+DLG APG W QV + +G L
Sbjct: 17 DPFVKRAQQEGLRSRSAYKLLELQEKYKLIKPGMTVVDLGAAPGGWSQVVTRFVGKL--- 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V L D R ++V ++ A P+QK +ILSDM P
Sbjct: 74 GKVYALDILAMPGLPDVDFLQGDFREESVLHALL--------ARIPEQKA-DLILSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG + D ++ L +D VLKP G L+IK +
Sbjct: 125 NLSGNRSIDQPRAMYLAELVLDFG------------------QRVLKPKGVLLIKAFQ 164
>gi|77456998|ref|YP_346503.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas fluorescens
Pf0-1]
gi|123606009|sp|Q3KI92.1|RLME_PSEPF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|77381001|gb|ABA72514.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 209
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ++YKLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEIQEKYKLIRPGMNVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ERILKPGGNFVIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|398898715|ref|ZP_10648516.1| 23S rRNA methylase [Pseudomonas sp. GM50]
gi|407366514|ref|ZP_11113046.1| 23S rRNA methyltransferase J [Pseudomonas mandelii JR-1]
gi|398183777|gb|EJM71250.1| 23S rRNA methylase [Pseudomonas sp. GM50]
Length = 209
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q++YKLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTQDEVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA + +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ARILKPGGNFVIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|398976137|ref|ZP_10686099.1| 23S rRNA methylase [Pseudomonas sp. GM25]
gi|398139689|gb|EJM28684.1| 23S rRNA methylase [Pseudomonas sp. GM25]
Length = 209
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ++YKLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEIQEKYKLIRPGMNVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ERILKPGGNFVIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|398840283|ref|ZP_10597520.1| 23S rRNA methylase [Pseudomonas sp. GM102]
gi|398856604|ref|ZP_10612324.1| 23S rRNA methylase [Pseudomonas sp. GM79]
gi|398110871|gb|EJM00765.1| 23S rRNA methylase [Pseudomonas sp. GM102]
gi|398242991|gb|EJN28590.1| 23S rRNA methylase [Pseudomonas sp. GM79]
Length = 209
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q++YKLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTQDEVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA + +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ARILKPGGNFVIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|398875585|ref|ZP_10630755.1| 23S rRNA methylase [Pseudomonas sp. GM67]
gi|398884390|ref|ZP_10639325.1| 23S rRNA methylase [Pseudomonas sp. GM60]
gi|398194548|gb|EJM81617.1| 23S rRNA methylase [Pseudomonas sp. GM60]
gi|398206807|gb|EJM93566.1| 23S rRNA methylase [Pseudomonas sp. GM67]
Length = 209
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q++YKLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDGIPDVTFIQGDFTEDKVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA + +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ARILKPGGNFVIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|160872297|ref|ZP_02062429.1| ribosomal RNA large subunit methyltransferase J [Rickettsiella
grylli]
gi|159121096|gb|EDP46434.1| ribosomal RNA large subunit methyltransferase J [Rickettsiella
grylli]
Length = 209
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A++ G+ +RSA+KLL+IQ++ KLIKPG ++DLG APG W Q+A + +G
Sbjct: 18 DPYVKRAKKEGFRSRSAYKLLEIQEKTKLIKPGMVIVDLGAAPGGWSQIASRLVG---TT 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ ++ V L D R ++V ++ + K +++SDM P
Sbjct: 75 GKVYALDILPMETLTPVEFLQGDFREESVIKQLLQ---------RIQSKPIDLVISDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SGI + D ++ L A+D A VLKP G+ V+K + +
Sbjct: 126 NFSGIRSVDQPRAIFLAELALDFA------------------KKVLKPKGYFVVKAFQGK 167
>gi|410722053|ref|ZP_11361368.1| 23S rRNA methylase [Methanobacterium sp. Maddingley MBC34]
gi|410597859|gb|EKQ52466.1| 23S rRNA methylase [Methanobacterium sp. Maddingley MBC34]
Length = 206
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 99/176 (56%), Gaps = 29/176 (16%)
Query: 10 FYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS 69
+Y++A++ Y +R++FKLLQ+ ++YK+IK G SV+DLG APG W QVA +++G G
Sbjct: 13 YYKKAKKQDYRSRASFKLLQLNRKYKIIKKGDSVIDLGAAPGGWSQVALEAVG---EDGL 69
Query: 70 VVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQV-RALSPKQKGFSVILSDMCPSVSG 127
VV +D+ ++K + ++ D + + +++ R L K + VI+SD P +SG
Sbjct: 70 VVAVDLNRMKS---FPEENFWSIKGDFTHEETLDEIKRTLQGKAQ---VIISDAAPKLSG 123
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
I D +R DLAL + + SD+ +LK G++++K+ + +
Sbjct: 124 IKDLDQ-------LRCTDLAL------TVLQISDT-----ILKYKGNIIMKVFQGE 161
>gi|390949340|ref|YP_006413099.1| 23S rRNA methylase [Thiocystis violascens DSM 198]
gi|390425909|gb|AFL72974.1| 23S rRNA methylase [Thiocystis violascens DSM 198]
Length = 212
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + +QR GY +R+A+KLL+IQ++ +++ PG+ VLDLG APG+W Q+A + +GP
Sbjct: 18 DPYVKRSQREGYRSRAAYKLLEIQEKDRILTPGTRVLDLGAAPGSWSQIASRLVGP---K 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ +D+ ++ V L D R +V + + + P ++LSDM P
Sbjct: 75 GQVIALDLLPMEALDGVVFLQGDFREDSVLSQL-----REAIGAEP----LDLVLSDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+++G D + V L A+DLA LKPGG LV+K + +
Sbjct: 126 NITGTVVTDQSRVVYLLELALDLA------------------RECLKPGGSLVVKAFQGE 167
>gi|398938775|ref|ZP_10668077.1| 23S rRNA methylase [Pseudomonas sp. GM41(2012)]
gi|398165247|gb|EJM53367.1| 23S rRNA methylase [Pseudomonas sp. GM41(2012)]
Length = 209
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q++YKLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTQDEVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA + +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ARILKPGGNFVIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|395005246|ref|ZP_10389138.1| 23S rRNA methylase [Acidovorax sp. CF316]
gi|394316826|gb|EJE53527.1| 23S rRNA methylase [Acidovorax sp. CF316]
Length = 217
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN- 66
D + + AQ+ G+ AR+A+KL +I +Q LIKPG++V+DLG PGAW Q + L P
Sbjct: 21 DTYVKLAQKEGFRARAAYKLKEIDEQLHLIKPGNTVVDLGSTPGAWSQYVRRRLSPSGAA 80
Query: 67 ----GGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
G+++ +D+ ++ V L+ D R ++V A + +V V++
Sbjct: 81 TGQLNGNIIALDILPMEPIEGVTFLNGDFREESVLAQLEAALEGRV---------VDVVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SGI + DAA L AVD A + LKP G LV+K
Sbjct: 132 SDMAPNLSGIESADAARISHLVELAVDFA------------------TAHLKPDGALVVK 173
Query: 179 LLE 181
L
Sbjct: 174 LFH 176
>gi|197121510|ref|YP_002133461.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp. K]
gi|196171359|gb|ACG72332.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter sp. K]
Length = 318
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 29/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+YR+A++ G ARSAFK+ +I +++L+ G +VLDLG APG +LQ+ ++G
Sbjct: 9 DFYYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILADAVG---EK 65
Query: 68 GSVVGIDVKKVKVPSLHCDAR-VQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
G VG+D++ ++ + R V+T D++ + +++R L + F ++ SDM P
Sbjct: 66 GVAVGVDLEPIR----NLGKRWVRTAVVDLLAPDALDKIRLLH--EGRFRLVTSDMAPKT 119
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
GI D A S+EL V +AL S VL PGG V K+ D
Sbjct: 120 IGIKVTDEARSLEL----VRMAL--------------SVAEQVLVPGGAFVAKVFMGGD 160
>gi|388547471|ref|ZP_10150735.1| 23S rRNA methyltransferase J [Pseudomonas sp. M47T1]
gi|388274392|gb|EIK93990.1| 23S rRNA methyltransferase J [Pseudomonas sp. M47T1]
Length = 207
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++Y+LI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQEKYRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D +V A ++ N +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDSVLAQILEAVGNS---------HVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D ++ L A+DLA VLKPGG VIK+ + +
Sbjct: 125 NMSGTPEVDMPKAMFLCELALDLA------------------ERVLKPGGDFVIKIFQGE 166
>gi|220916277|ref|YP_002491581.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219954131|gb|ACL64515.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 298
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 94/179 (52%), Gaps = 29/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+YR+A++ G ARSAFK+ +I +++L+ G +VLDLG APG +LQ+ ++G
Sbjct: 9 DFYYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILADAVG---EK 65
Query: 68 GSVVGIDVKKVKVPSLHCDAR-VQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
G VG+D++ ++ + R V+T D++ + +++R L + F ++ SDM P
Sbjct: 66 GVAVGVDLEPIR----NLGKRWVRTAVVDLLAPDALDKIRLLH--EGRFRLVTSDMAPKT 119
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
GI D A S+EL V +AL S VL PGG V K+ D
Sbjct: 120 IGIKVTDEARSLEL----VRMAL--------------SVAEQVLVPGGAFVAKVFMGGD 160
>gi|358060513|dbj|GAA93918.1| hypothetical protein E5Q_00564 [Mixia osmundae IAM 14324]
Length = 893
Score = 83.2 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 30/185 (16%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+QI K+Y+ ++ +DL APG WLQVA +++
Sbjct: 8 TGKGRLDKWYKLAKEQGYRARSAFKLIQINKKYQFLESARCCIDLCAAPGGWLQVASKAM 67
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS--VILS 119
P +VGID+ +K P C + ++ D RA+ + K + V+L
Sbjct: 68 PP---NSVIVGIDLVAIK-PIARCVTIAEDITTDACR------RAIRAEVKDWKADVVLH 117
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
D P+V +DA EL + ++ LA + L PGG V K+
Sbjct: 118 DGAPNVGTAWIQDAFTQAELVLASLKLA------------------TEFLAPGGTFVTKV 159
Query: 180 LESQD 184
S D
Sbjct: 160 FRSSD 164
>gi|325982670|ref|YP_004295072.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosomonas sp. AL212]
gi|325532189|gb|ADZ26910.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosomonas sp. AL212]
Length = 205
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 82/135 (60%), Gaps = 18/135 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DFF ++A++ GY +R+A+KLL+I ++ +++KPG +V+DLG APG+W QVA +G G
Sbjct: 17 DFFVKQAKKEGYRSRAAYKLLEITEKDQILKPGLTVVDLGAAPGSWSQVASHKIG---RG 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADV-INLPSNQVRALSPKQKGFSVILSDMC 122
G V+ +D+ ++ V + D R + ++ +L ++Q+ +++SDM
Sbjct: 74 GKVIAVDILEMAPLPGVEFIQGDFREEYAIVELKKHLGNDQL----------DLVISDMS 123
Query: 123 PSVSGITTKDAALSV 137
P++SGI D A S+
Sbjct: 124 PNMSGIVISDQARSM 138
>gi|395785749|ref|ZP_10465477.1| ribosomal RNA large subunit methyltransferase E [Bartonella tamiae
Th239]
gi|423717356|ref|ZP_17691546.1| ribosomal RNA large subunit methyltransferase E [Bartonella tamiae
Th307]
gi|395424207|gb|EJF90394.1| ribosomal RNA large subunit methyltransferase E [Bartonella tamiae
Th239]
gi|395427571|gb|EJF93662.1| ribosomal RNA large subunit methyltransferase E [Bartonella tamiae
Th307]
Length = 242
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 26/175 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KLL+I ++YKL+K G +++DLG APG W QVA +G D
Sbjct: 45 DPYVHQSKIDGYRSRAAYKLLEINERYKLLKKGQNIIDLGAAPGGWCQVAAHIVGSSDEN 104
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGF-SVILSDMCPSVS 126
VVGID LH D + ++ L L+ KG ++LSDM +
Sbjct: 105 PKVVGIDY-------LHMDPLPGVILLEMDFLDDEAPYQLTKALKGEPDLVLSDMAAPTT 157
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D ++ L A D A+ VLKPGGH + K +
Sbjct: 158 GHRQTDHIRTIYLCEVAADFAI------------------SVLKPGGHFLAKTFQ 194
>gi|108757449|ref|YP_631182.1| ribosomal RNA large subunit methyltransferase J [Myxococcus xanthus
DK 1622]
gi|123247821|sp|Q1D841.1|RLME_MYXXD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|108461329|gb|ABF86514.1| ribosomal RNA large subunit methyltransferase J [Myxococcus xanthus
DK 1622]
Length = 213
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 82/141 (58%), Gaps = 9/141 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ G ARSAFK+ ++ K++ ++K G VLDLG APG +LQ+ ++GP
Sbjct: 16 DHYFQKAKQEGLRARSAFKVDELIKRFPMVKKGHVVLDLGAAPGGFLQILADAVGP---K 72
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSVS 126
G V+G+D+ ++ S VQT DV L + L+ G F ++SDM P S
Sbjct: 73 GRVIGVDIVAIRPFSQPF---VQTAVLDV--LADDFDAKLTELHAGPFDAVISDMAPKTS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
GI D A S+ L +A++LA
Sbjct: 128 GIKATDEARSLRLAGKALELA 148
>gi|398983408|ref|ZP_10690017.1| 23S rRNA methylase [Pseudomonas sp. GM24]
gi|399014419|ref|ZP_10716710.1| 23S rRNA methylase [Pseudomonas sp. GM16]
gi|398110984|gb|EJM00876.1| 23S rRNA methylase [Pseudomonas sp. GM16]
gi|398157309|gb|EJM45705.1| 23S rRNA methylase [Pseudomonas sp. GM24]
Length = 209
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ++YKLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEIQEKYKLIRPGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDEVLGRILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ERILKPGGNFVIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|86157470|ref|YP_464255.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaeromyxobacter
dehalogenans 2CP-C]
gi|123499845|sp|Q2IPT3.1|RLME_ANADE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|85773981|gb|ABC80818.1| 23S rRNA Um-2552 2'-O-methyltransferase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 267
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 27/178 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+YR+A++ G ARSAFK+ +I +++L+ G +VLDLG APG +LQ+ +++G
Sbjct: 9 DFYYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILAEAVG---EK 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G VG+D++ ++ V+T D++ + +++R L + F ++ SDM P
Sbjct: 66 GVAVGVDLEPIRNLGKRW---VRTAIVDLLAPDALDKIRLLHDGR--FRLVTSDMAPKTI 120
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
GI D A S+EL V +AL S VL PGG V K+ D
Sbjct: 121 GIKVTDEARSLEL----VRMAL--------------SVAEQVLVPGGAFVAKVFMGGD 160
>gi|330807476|ref|YP_004351938.1| ribosomal RNA large subunit methyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|378948800|ref|YP_005206288.1| protein FtsJ [Pseudomonas fluorescens F113]
gi|423093465|ref|ZP_17081261.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens Q2-87]
gi|423695288|ref|ZP_17669778.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens Q8r1-96]
gi|327375584|gb|AEA66934.1| Ribosomal RNA large subunit methyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|359758814|gb|AEV60893.1| FtsJ [Pseudomonas fluorescens F113]
gi|388008534|gb|EIK69785.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens Q8r1-96]
gi|397889135|gb|EJL05618.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens Q2-87]
Length = 210
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPFVKMAQKDGYRSRASYKLLEIQERDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G+++ D+ ++ V + D V A ++ + N+V +++SDM
Sbjct: 74 GTLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGKNEV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ + D S+ L A+DLA + VLKPGG +IK+ +
Sbjct: 124 PNMSGLASVDMPRSMFLCELALDLA------------------TRVLKPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|296127776|ref|YP_003635028.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira murdochii
DSM 12563]
gi|296019592|gb|ADG72829.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira murdochii
DSM 12563]
Length = 193
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 30/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF++++A+ Y ARS FKL + Q ++K IK +VLD+GC+PG++ Q L +
Sbjct: 6 DFYFKKAKEENYKARSVFKLEEAQNKFKFIKSSDTVLDVGCSPGSFSQYM---LNKILKT 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
GSVVG+D+ +P+ R + D+ ++ A S F V++SD P+
Sbjct: 63 GSVVGVDI----LPNSFAHQRFTFMLGDIKDMD-----ASSFNNTLFDVVVSDAMPN--- 110
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
TT D + R+V L LA VLK GH IK+ + +D Q
Sbjct: 111 -TTSDRETN---HFRSVSLCRAIFNLA-----------KDVLKENGHFFIKVFDGKDLQ 154
>gi|338534158|ref|YP_004667492.1| ribosomal RNA large subunit methyltransferase J [Myxococcus fulvus
HW-1]
gi|337260254|gb|AEI66414.1| ribosomal RNA large subunit methyltransferase J [Myxococcus fulvus
HW-1]
Length = 206
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 7/140 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ G ARSAFK+ ++ K++ ++K G VLDLG APG +LQ+ +++GP
Sbjct: 9 DHYFQKAKQEGLRARSAFKVDELIKRFPMVKKGHVVLDLGAAPGGFLQILAEAVGP---K 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+ ++ S VQT DV+ + L F ++SDM P SG
Sbjct: 66 GRVIGVDIVAIRPFSQPF---VQTAVLDVLA-DDFDAKLLELHDGLFDAVISDMAPKTSG 121
Query: 128 ITTKDAALSVELGMRAVDLA 147
I D A S+ L +A+++A
Sbjct: 122 IKATDEARSLRLAGKALEVA 141
>gi|45358169|ref|NP_987726.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
maripaludis S2]
gi|74555203|sp|Q6LZL8.1|RLME_METMP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|44920926|emb|CAF30162.1| 23 S ribosomal RNA methyltransferase related [Methanococcus
maripaludis S2]
Length = 258
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+R Y +R+ +KL Q+ +++ LIK + V+DLGCAPG WLQ A +G
Sbjct: 15 DHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVG---ED 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID++ VK P H + + + D+ Q + L P++ VI+ D P++S
Sbjct: 72 GFIVGIDLQTVK-PLPHDN--IIAIKGDMTKEEILKQAKDLLPEKP--DVIICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 127 GVWDVDHVRSLELTTMAL------------------MTATKMLKKGGNFVVKVFQ 163
>gi|145546330|ref|XP_001458848.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426670|emb|CAK91451.1| unnamed protein product [Paramecium tetraurelia]
Length = 244
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%), Gaps = 18/121 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+ +E++RL +R+AFKL+QI ++Y + KP VLDLG APG+W QV +
Sbjct: 28 DFYVKESKRLQLRSRAAFKLMQINEKYAIYKPNQYVLDLGAAPGSWSQVVSEK------- 80
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ ID+ ++V + V+ + D+++ NQ+R Q F V+LSDM P+VS
Sbjct: 81 GKVMAIDL--LEVSPIQ---NVKFIQGDIMDKQIMNQIR-----QHKFDVVLSDMAPNVS 130
Query: 127 G 127
G
Sbjct: 131 G 131
>gi|337286518|ref|YP_004625991.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thermodesulfatator
indicus DSM 15286]
gi|335359346|gb|AEH45027.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thermodesulfatator
indicus DSM 15286]
Length = 195
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 87/183 (47%), Gaps = 40/183 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ ++A++ Y ARS +K+ + ++Y+L++ G VLDLG APG+W + A + +G
Sbjct: 7 DYYAKKAKQEKYPARSVYKIKEADQKYRLLRRGQKVLDLGAAPGSWSKYALEKVG---KN 63
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQ-------KGFSVILSD 120
G VVG+D+ VK +SA + L+P++ F +LSD
Sbjct: 64 GLVVGVDLSPVK------------ISAPNFVFLQQDIFELNPEELCEKASVSAFDAVLSD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P +G + D SV L RA+++A VLKP G +K+
Sbjct: 112 MAPKTTGDRSGDHFRSVHLAKRALEIA------------------EKVLKPSGVFFVKVF 153
Query: 181 ESQ 183
E +
Sbjct: 154 EGE 156
>gi|150403543|ref|YP_001330837.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
maripaludis C7]
gi|189040314|sp|A6VJR0.1|RLME_METM7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|150034573|gb|ABR66686.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus
maripaludis C7]
Length = 258
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ Y +R+ +KL Q+ +++ LIK + V+DLGCAPG WLQ A +G
Sbjct: 15 DHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVG---EK 71
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID++ VK +P + A ++ + I Q + L P++ VI+ D P++S
Sbjct: 72 GFIVGIDLQTVKPLPYENVIAIKGDMTKEEI---LKQAKDLLPEKP--DVIICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D A S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 127 GVWDVDHARSLELTTMAL------------------MTATKMLKKGGNFVVKVFQ 163
>gi|212704983|ref|ZP_03313111.1| hypothetical protein DESPIG_03051 [Desulfovibrio piger ATCC 29098]
gi|212671647|gb|EEB32130.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
piger ATCC 29098]
Length = 220
Score = 82.8 bits (203), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 87/182 (47%), Gaps = 31/182 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A+R Y ARS +KL ++ ++KL + G VLDLG APG+W A + +G
Sbjct: 6 DHYFLKAKRENYPARSVYKLKELDAKFKLFRQGMRVLDLGAAPGSWSLGAAEKVG---QR 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLP---SNQVRALSPKQKGFSVILSDMCPS 124
G V+G D++ + +V + DV N ++R + P F V++SDM P
Sbjct: 63 GLVLGCDIQTTETA---FPPQVTFMQEDVFNRSDAFEARLREMGP----FDVVMSDMAPR 115
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+G D A S+EL A+++A LKPGG ++K+ D
Sbjct: 116 TTGTKFTDQARSLELACEALEVA------------------RLHLKPGGSFIVKIFMGPD 157
Query: 185 AQ 186
Q
Sbjct: 158 IQ 159
>gi|398998976|ref|ZP_10701730.1| 23S rRNA methylase [Pseudomonas sp. GM18]
gi|398132817|gb|EJM22074.1| 23S rRNA methylase [Pseudomonas sp. GM18]
Length = 209
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q++YKLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEVQEKYKLIRPGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDEVLTRILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ERILKPGGNFVIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|34499253|ref|NP_903468.1| cell division protein FtsJ [Chromobacterium violaceum ATCC 12472]
gi|81654487|sp|Q7NRI3.1|RLME_CHRVO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|34105104|gb|AAQ61460.1| cell division protein FtsJ [Chromobacterium violaceum ATCC 12472]
Length = 205
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 34/183 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I + KLI+PG+ + DLG PG+W QVA + +G
Sbjct: 17 DQYVHMAQKDGYRARAAYKLLEINDKDKLIRPGTVLADLGSTPGSWSQVAARIVG---EK 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R + V + L RAL +++SDM P
Sbjct: 74 GKVFALDILDMDPVPGVDFIQGDFREEAVLREFEQLLDG--RAL-------DLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG++ D A S L A++ A LKPGGH ++K+ +
Sbjct: 125 NMSGMSAIDQARSFLLCELALEFA------------------RDHLKPGGHFLVKVFQGS 166
Query: 184 DAQ 186
D Q
Sbjct: 167 DFQ 169
>gi|303256870|ref|ZP_07342884.1| ribosomal RNA large subunit methyltransferase J [Burkholderiales
bacterium 1_1_47]
gi|330998881|ref|ZP_08322608.1| ribosomal RNA large subunit methyltransferase J [Parasutterella
excrementihominis YIT 11859]
gi|302860361|gb|EFL83438.1| ribosomal RNA large subunit methyltransferase J [Burkholderiales
bacterium 1_1_47]
gi|329576095|gb|EGG57614.1| ribosomal RNA large subunit methyltransferase J [Parasutterella
excrementihominis YIT 11859]
Length = 214
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 15/146 (10%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN- 66
D F +++ + GY ARS +KL++I + K+IKPG SV+DLG APG+W Q+ + L D
Sbjct: 21 DPFVKKSVQEGYRARSVYKLMEIDDKDKIIKPGMSVVDLGAAPGSWTQIVKERLTDKDGK 80
Query: 67 -GGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G V+ +D+ ++ V L D R Q V+ + +L + V+LSDM
Sbjct: 81 IDGKVIAMDILPMEPIEGVHFLQGDFREQEVADKLTDLLEGE---------KVDVVLSDM 131
Query: 122 CPSVSGITTKDAALSVELGMRAVDLA 147
P++SG+ DAA + L A+D A
Sbjct: 132 APNLSGVAAADAARCLLLNELALDFA 157
>gi|307719842|ref|YP_003875374.1| hypothetical protein STHERM_c21720 [Spirochaeta thermophila DSM
6192]
gi|306533567|gb|ADN03101.1| hypothetical protein STHERM_c21720 [Spirochaeta thermophila DSM
6192]
Length = 194
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 27/179 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ R+A+R GY ARS +KL++IQ++Y+++ PG VLDLG APG+W + +G
Sbjct: 6 DYYTRKAKREGYPARSVYKLMEIQQKYRIVSPGDRVLDLGAAPGSWSKYLLSCVG---EK 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV +D+ + + S R+ D S++V+ F VI+SD PS SG
Sbjct: 63 GLVVAVDLLPLVIGS---HERLVFYQGD---FTSDEVQERVDVHAPFQVIVSDAAPSTSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A R+ L G +LA L PGG+LV KL + AQ
Sbjct: 117 NRGLDTA-------RSEALVEGILSLAGR-----------WLVPGGNLVAKLFQGSGAQ 157
>gi|395784652|ref|ZP_10464474.1| ribosomal RNA large subunit methyltransferase E [Bartonella
melophagi K-2C]
gi|395421912|gb|EJF88134.1| ribosomal RNA large subunit methyltransferase E [Bartonella
melophagi K-2C]
Length = 238
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 30/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK++K G ++DLG APG W QVA + +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLVEINERYKILKKGQKIIDLGAAPGGWCQVAARIVGSNDQR 104
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPS 124
SVVGID +V +P V + D N P + L K V+LSDM
Sbjct: 105 PSVVGIDYLRVDPLPG------VVMLEMDFFHENAPQQLISVLGAKP---DVVLSDMAAP 155
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++G D ++ L A D A+ VLKPGGH + K +
Sbjct: 156 MTGHRQTDHLRTIYLCESAADFAI------------------SVLKPGGHFLAKTFQ 194
>gi|406881222|gb|EKD29344.1| hypothetical protein ACD_78C00439G0002 [uncultured bacterium (gcode
4)]
Length = 305
Score = 82.4 bits (202), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 54/72 (75%), Gaps = 4/72 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D+FY EA+RLGY ARSAFKLL IQ++Y +I+ G VLD+ APG+WLQV + +GP
Sbjct: 73 DYFY-EAKRLGYRARSAFKLLDIQEKYNIIRTGMKVLDIASAPGSWLQVLAKMVGPT--- 128
Query: 68 GSVVGIDVKKVK 79
G + G+D++K++
Sbjct: 129 GIIAGVDIQKIE 140
>gi|310822375|ref|YP_003954733.1| ribosomal RNA large subunit methyltransferase j [Stigmatella
aurantiaca DW4/3-1]
gi|309395447|gb|ADO72906.1| Ribosomal RNA large subunit methyltransferase J [Stigmatella
aurantiaca DW4/3-1]
Length = 215
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 83/142 (58%), Gaps = 9/142 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ G ARSAFK+ +I +++ ++K G VLDLG APG +LQ+ ++G
Sbjct: 16 DHYFQKAKQEGLRARSAFKVDEILRRFPVVKKGGVVLDLGAAPGGFLQILADTVG---LS 72
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+G+D+ ++ P H V V AD + ++RAL + ++SDM P S
Sbjct: 73 GRVIGVDIVAIRPFPQKHVTTAVLDVLADDFD---ARLRALY--EGPLDAVISDMAPKTS 127
Query: 127 GITTKDAALSVELGMRAVDLAL 148
GI D A S+ L +A+++A+
Sbjct: 128 GIKATDEARSLRLAGKALEVAV 149
>gi|119185034|ref|XP_001243345.1| 21S rRNA (uridine(2791)-2'-O)-methyltransferase MRM2 [Coccidioides
immitis RS]
gi|392866226|gb|EJB11077.1| cell division protein ftsj [Coccidioides immitis RS]
Length = 336
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 95/233 (40%), Gaps = 75/233 (32%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++REA G +R+AFKLLQI Y++ +PG +V+DLG APG+W QVA P
Sbjct: 79 DIYWREANLRGLKSRAAFKLLQINNHYRIFEPGQTVVDLGYAPGSWSQVAVDLTHP---N 135
Query: 68 GSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLP-------------------- 100
G V+GID+ + P R+Q + + P
Sbjct: 136 GRVLGIDIIPAQPPKGVSTIQGNFLSPRIQAYIREFLRNPDRGRPLREELCSRTPQKPRT 195
Query: 101 SNQVRALSP----KQKGFS-----------------------VILSDMCPSVSGITTKDA 133
+N+V P ++K S V+LSDM + SG+ +D
Sbjct: 196 ANEVETFEPGYIDREKDVSERISREPCDDHSPQTEAGEGTVDVVLSDMMMNTSGLGFRDH 255
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
A S++L AV+ + VLKPGGH + K + + Q
Sbjct: 256 ARSMDLCNAAVNFSY------------------DVLKPGGHFICKFYQGNEDQ 290
>gi|398951739|ref|ZP_10674274.1| 23S rRNA methylase [Pseudomonas sp. GM33]
gi|398156027|gb|EJM44453.1| 23S rRNA methylase [Pseudomonas sp. GM33]
Length = 210
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+++ D+ ++ V + D V A +++ N K +++SDM P
Sbjct: 74 GTLIASDILEMDSIPDVTFIQGDFTEDAVLAQILDAVGN---------KEVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DL+ + VLKPGG +IK+ + +
Sbjct: 125 NMSGLPAVDMPRAMFLCELALDLS------------------TRVLKPGGDFLIKIFQGE 166
>gi|383772512|ref|YP_005451578.1| ribosomal RNA large subunit methyltransferase E [Bradyrhizobium sp.
S23321]
gi|381360636|dbj|BAL77466.1| ribosomal RNA large subunit methyltransferase E [Bradyrhizobium sp.
S23321]
Length = 228
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+ LGY +R+AFKLL+I +Y+L+K G +V+DLG APG W Q+A + +G +D
Sbjct: 33 DPYVVKAKALGYRSRAAFKLLEIDDKYRLLKHGMAVVDLGAAPGGWSQIAAKRVGSIDGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV ID+ + +P + A V+ D + + P+ L G V++SDM +
Sbjct: 93 GKVVAIDL--LDMPEI---AGVEFAQLDFMDNDAPAKLNAMLGG---GADVVMSDMAANT 144
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+G D +R V L AA A VLKPGG + K +S
Sbjct: 145 TGHRKTDQ-------LRIVGLIETAAAFACD-----------VLKPGGTFLAKAFQS 183
>gi|237745683|ref|ZP_04576163.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
formigenes HOxBLS]
gi|229377034|gb|EEO27125.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
formigenes HOxBLS]
Length = 215
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 38/180 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D F + AQ+ GY AR+ +KL +I + KL++PG ++DLGCAPG+W Q + LG
Sbjct: 17 DPFVKLAQKEGYRARAVYKLSEIDENAKLVRPGQVIVDLGCAPGSWSQYIARKLGGQGGH 76
Query: 63 PLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
P++ G++VG+D+ ++ V L D R ++V ++ L L +Q ++L
Sbjct: 77 PVN--GTIVGLDILPMEPVEGVHFLQGDFREESVLHELEAL-------LEGRQ--VDLVL 125
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SGI + DAA VE M DLAL A LKP G L++K
Sbjct: 126 SDMAPNLSGIASADAA-RVEYLM---DLALEFA--------------QAHLKPSGSLLVK 167
>gi|339482110|ref|YP_004693896.1| Ribosomal RNA large subunit methyltransferase E [Nitrosomonas sp.
Is79A3]
gi|338804255|gb|AEJ00497.1| Ribosomal RNA large subunit methyltransferase E [Nitrosomonas sp.
Is79A3]
Length = 205
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 34/183 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DFF ++A++ GY +R+A+KLL+I ++ +++PG V+DLG APG+W QVA +G N
Sbjct: 17 DFFVKQAKKDGYRSRAAYKLLEISERDHILRPGMIVVDLGAAPGSWSQVASHKVG---NK 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ +D+ + V + D R + V+ L + L Q +++SDM P
Sbjct: 74 GEVIAVDILDMSPLPGVKFIQSDFREEHA---VLELRKH----LGEHQP--DLVISDMSP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SGI D A S + L ALA + L GG+ ++K+ + +
Sbjct: 125 NISGIVVSDQARS---------MYLAELALAFSMEQ---------LNYGGNFLVKVFQGR 166
Query: 184 DAQ 186
D +
Sbjct: 167 DFE 169
>gi|241763937|ref|ZP_04761979.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax delafieldii
2AN]
gi|241366760|gb|EER61201.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax delafieldii
2AN]
Length = 220
Score = 82.4 bits (202), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I +Q LIKPG +V+DLG PGAW Q + L P
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGFTVVDLGSTPGAWSQYVRRRLSPAGAA 80
Query: 68 -----GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
G+++ +D+ ++ V LH D R V A + + + + V++
Sbjct: 81 AGQLNGAIIALDILPMEPVEGVTFLHGDFREPEVLARLEE---------ALQGRTVDVVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SGI + DAA L AVD A LKP G LV+K
Sbjct: 132 SDMAPNLSGIESADAARIAHLVELAVDFACHH------------------LKPEGALVVK 173
Query: 179 LLE 181
L
Sbjct: 174 LFH 176
>gi|398870587|ref|ZP_10625909.1| 23S rRNA methylase [Pseudomonas sp. GM74]
gi|398909502|ref|ZP_10654568.1| 23S rRNA methylase [Pseudomonas sp. GM49]
gi|398929653|ref|ZP_10664088.1| 23S rRNA methylase [Pseudomonas sp. GM48]
gi|426407611|ref|YP_007027710.1| ribosomal RNA large subunit methyltransferase [Pseudomonas sp. UW4]
gi|398166722|gb|EJM54814.1| 23S rRNA methylase [Pseudomonas sp. GM48]
gi|398187990|gb|EJM75312.1| 23S rRNA methylase [Pseudomonas sp. GM49]
gi|398207824|gb|EJM94567.1| 23S rRNA methylase [Pseudomonas sp. GM74]
gi|426265828|gb|AFY17905.1| ribosomal RNA large subunit methyltransferase [Pseudomonas sp. UW4]
Length = 210
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+++ D+ ++ V + D V A +++ N K +++SDM P
Sbjct: 74 GTLIASDILEMDSIPDVTFIQGDFTEDAVLAQILDAVGN---------KEVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DL+ + VLKPGG +IK+ + +
Sbjct: 125 NMSGLPAVDMPRAMFLCELALDLS------------------TRVLKPGGDFLIKIFQGE 166
>gi|224823864|ref|ZP_03696973.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudogulbenkiania
ferrooxidans 2002]
gi|347541233|ref|YP_004848659.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudogulbenkiania sp.
NH8B]
gi|224604319|gb|EEG10493.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudogulbenkiania
ferrooxidans 2002]
gi|345644412|dbj|BAK78245.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudogulbenkiania sp.
NH8B]
Length = 205
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 34/183 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I + KLI+PG+ + DLG APG+W QVA + +G +
Sbjct: 17 DHYVHMAQKDGYRARAAYKLLEINDKDKLIRPGTVLADLGSAPGSWSQVAARLVG---DK 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R Q V + L + +++SDM P
Sbjct: 74 GKVYALDILPMNPIADVEFIQGDFREQEVLDQFVALLGG---------RELDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG++ D A S L A++ LKPGG ++K+ +
Sbjct: 125 NISGMSAIDQARSFHLCELALEFV------------------RDHLKPGGSFLVKVFQGS 166
Query: 184 DAQ 186
D Q
Sbjct: 167 DFQ 169
>gi|398992986|ref|ZP_10695945.1| 23S rRNA methylase [Pseudomonas sp. GM21]
gi|398136063|gb|EJM25164.1| 23S rRNA methylase [Pseudomonas sp. GM21]
Length = 208
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q++Y LI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEVQEKYNLIRPGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDEVLARILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ERILKPGGNFVIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|313673338|ref|YP_004051449.1| 23S rRNA um-2552 2'-o-methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940094|gb|ADR19286.1| 23S rRNA Um-2552 2'-O-methyltransferase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 196
Score = 82.0 bits (201), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 76/133 (57%), Gaps = 8/133 (6%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
D FY++A+ GY +R+++KLL++ ++YKL + +VLD+G APG W QVA Q LG
Sbjct: 5 KDSFYKKAKLEGYRSRASYKLLELNQKYKLFRKNDAVLDVGAAPGGWSQVALQLLGE--- 61
Query: 67 GGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D+ + + L+ D R + D+ + N + ++ F +++SD+ P+ +
Sbjct: 62 KGIVVAVDI--LDINPLN-DKRFHFIKGDIRD--ENTLSEITKYASSFDIVISDIAPNTT 116
Query: 127 GITTKDAALSVEL 139
G D S+ L
Sbjct: 117 GQKFVDHQNSINL 129
>gi|148244491|ref|YP_001219185.1| cell division protein methyltransferase FtsJ [Candidatus
Vesicomyosocius okutanii HA]
gi|158514271|sp|A5CX75.1|RLME_VESOH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|146326318|dbj|BAF61461.1| cell division protein methyltransferase FtsJ [Candidatus
Vesicomyosocius okutanii HA]
Length = 210
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A++ GY +R+ +KL+++ + K IKPG+ V+DLG APG+W Q+A +++G
Sbjct: 17 DKFVKNAKKAGYRSRAVYKLIEVINKEKFIKPGNKVIDLGAAPGSWSQMAIKAVG---KS 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ +K + L D +V ++NL NQ +V+LSD+ P
Sbjct: 74 GQVIANDILNIKPIDGIDFLQGDFTENSVYEALLNLTMNQ---------KVNVVLSDIAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG + D S+ L A+D+A+ L P G+ +K+ +
Sbjct: 125 NISGQPSVDIPKSMYLCELALDIAIKS------------------LTPSGYFFVKVFQ 164
>gi|39935266|ref|NP_947542.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris CGA009]
gi|81562937|sp|Q6N7Q9.1|RLME_RHOPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|39649118|emb|CAE27638.1| cell division protein FtsJ [Rhodopseudomonas palustris CGA009]
Length = 237
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KL +I +++L+K G +V+DLG APG W QVA + +G D
Sbjct: 33 DPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQVAAKKVGAADGR 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV ID+ ++ +VP V D ++ PS R G +++SDM + +
Sbjct: 93 GKVVAIDLLEMGEVPG------VTFAQLDFLD-PSAPERLREMLGGGADIVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L A AS VLKPGG + K+ +S
Sbjct: 146 GHRKTDQ-------LRIVGLVETAAMFASE-----------VLKPGGTFLAKVFQS 183
>gi|192290875|ref|YP_001991480.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris TIE-1]
gi|226705305|sp|B3QFD2.1|RLME_RHOPT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|192284624|gb|ACF01005.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris TIE-1]
Length = 237
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KL +I +++L+K G +V+DLG APG W QVA + +G D
Sbjct: 33 DPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQVAAKKVGAADGR 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV ID+ ++ +VP V D ++ PS R G +++SDM + +
Sbjct: 93 GKVVAIDLLEMGEVPG------VTFAQLDFLD-PSAPERLREMLGGGADIVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L A AS VLKPGG + K+ +S
Sbjct: 146 GHRKTDQ-------LRIVGLVETAAMFASE-----------VLKPGGTFLAKVFQS 183
>gi|384219542|ref|YP_005610708.1| cell division protein [Bradyrhizobium japonicum USDA 6]
gi|354958441|dbj|BAL11120.1| cell division protein [Bradyrhizobium japonicum USDA 6]
Length = 230
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+ LGY +R+AFKLL+I ++Y+L+K G +V+DLG APG W Q+A + +G +D
Sbjct: 33 DPYVVKAKALGYRSRAAFKLLEIDEKYRLLKHGMAVVDLGAAPGGWSQIAAKRVGSVDGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV ID+ + +P + A V D + + P+ L G +++SDM +
Sbjct: 93 GKVVAIDL--LDMPEI---AGVDFAQLDFMDNDAPAKLTAMLGG---GADIVMSDMAANT 144
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+G D +R V L AA A VLKPGG + K +S
Sbjct: 145 TGHRKTDQ-------LRIVGLIETAAAFACD-----------VLKPGGAFLAKTFQS 183
>gi|398891854|ref|ZP_10645128.1| 23S rRNA methylase [Pseudomonas sp. GM55]
gi|398186411|gb|EJM73787.1| 23S rRNA methylase [Pseudomonas sp. GM55]
Length = 210
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+++ D+ ++ V + D V A ++ N K +++SDM P
Sbjct: 74 GTLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGN---------KEVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DL+ + VLKPGG +IK+ + +
Sbjct: 125 NMSGLPAVDMPRAMFLCELALDLS------------------TRVLKPGGDFLIKIFQGE 166
>gi|262376626|ref|ZP_06069854.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
lwoffii SH145]
gi|262308336|gb|EEY89471.1| ribosomal RNA large subunit methyltransferase J [Acinetobacter
lwoffii SH145]
Length = 216
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY AR+A+KLL++Q++YK+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPYVKKAQKDGYRARAAYKLLEMQEKYKIIKPGMTVVDLGAAPGSWSQIAGKLVG---DK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V L D R + V ++ + ++ V++SDM P
Sbjct: 81 GLLIASDILPMDALPDVTFLQGDFREEEVFQQLLEILDGRI---------VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A + VL P G V+K+ +
Sbjct: 132 NTSGNKAVDQPRQIYLCELALDFA------------------NKVLGPKGQFVVKVFQ 171
>gi|261378830|ref|ZP_05983403.1| ribosomal RNA large subunit methyltransferase J [Neisseria cinerea
ATCC 14685]
gi|269144809|gb|EEZ71227.1| ribosomal RNA large subunit methyltransferase J [Neisseria cinerea
ATCC 14685]
Length = 206
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + GP
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSWSQVAAKLAGP---S 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L +N + +++ DM P
Sbjct: 75 GAVFALDILPMEAVNGVSFIQGDFRENDVLAQFETLLNN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S+ L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSLYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|115525274|ref|YP_782185.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisA53]
gi|122295646|sp|Q07LH9.1|RLME_RHOP5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|115519221|gb|ABJ07205.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisA53]
Length = 235
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 24/175 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KLL+I ++ +KPG+SV+DLG APG W Q+A + +G +
Sbjct: 33 DPYVAQAKRDGYRSRAAYKLLEIDDKHHFLKPGASVVDLGAAPGGWSQIAAKRVGATEGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV ID+ +++P + V D ++ P+ + L+ V++SDM + +G
Sbjct: 93 GKVVAIDL--LEMPEI---VGVTFAQLDFLS-PAAPEKLLAMIGGRVDVVMSDMAANTTG 146
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
D +R V L AA A VLKPGG V K+ +S
Sbjct: 147 HRKTDQ-------LRIVGLVEDAAAFA-----------CDVLKPGGTFVAKVFQS 183
>gi|239907722|ref|YP_002954463.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
magneticus RS-1]
gi|239797588|dbj|BAH76577.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
magneticus RS-1]
Length = 216
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 25/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A++ Y ARS +KL +I+KQ +L+ PG++VLDLG PG+W A + +GP
Sbjct: 9 DHYFNKAKQDNYPARSVYKLEEIEKQSRLLTPGAAVLDLGACPGSWSLYAAKRVGP---S 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ +D+ + V + D++ P + + F V+LSDM P G
Sbjct: 66 GRVLAVDLNPA---ATAFPGNVTYLIGDMLE-PGPDIAEAFERFGPFDVVLSDMAPKTIG 121
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
D A S+EL A+ +A+ LKPGG V+K+ + D+
Sbjct: 122 HKFTDQARSLELCEAALSVAV------------------TRLKPGGAFVVKIFQGPDS 161
>gi|229592644|ref|YP_002874763.1| cell division protein [Pseudomonas fluorescens SBW25]
gi|259494568|sp|C3K267.1|RLME_PSEFS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|229364510|emb|CAY52363.1| cell division protein [Pseudomonas fluorescens SBW25]
Length = 216
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ + KLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V +H D TV A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFVHGDFTQDTVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG ++K+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|296313876|ref|ZP_06863817.1| ribosomal RNA large subunit methyltransferase J [Neisseria
polysaccharea ATCC 43768]
gi|296839605|gb|EFH23543.1| ribosomal RNA large subunit methyltransferase J [Neisseria
polysaccharea ATCC 43768]
Length = 206
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + GP
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSWSQVAAKLAGP---S 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L +N + +++ DM P
Sbjct: 75 GAVFALDILPMEAVNGVSFIQGDFRENDVLAQFETLLNN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S+ L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSLYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|452823766|gb|EME30774.1| FtsJ-like methyltransferase family protein [Galdieria sulphuraria]
Length = 299
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR+A+ GY ARSA+KLLQ+ +++ L K +V+DL APG+W QV + L L G
Sbjct: 10 DIYYRKAKEEGYRARSAYKLLQLDQEFNLFKDAENVVDLCAAPGSWSQVVSKRLRELRKG 69
Query: 68 -GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
++V +D++++ P V + D+ + P+ + + V+LSD P V+
Sbjct: 70 QATIVAVDLQEI-API----EGVTVIQGDITSRPTVETILKEFENGMVDVVLSDGAPDVT 124
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
G+ D + EL + A+++A + +L+ GG V K+ +D
Sbjct: 125 GLHDLDEYIQSELILSALNVA------------------TFLLRQGGTFVAKVFRGKDT 165
>gi|407776100|ref|ZP_11123390.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thalassospira
profundimaris WP0211]
gi|407280959|gb|EKF06525.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thalassospira
profundimaris WP0211]
Length = 268
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 26/175 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EA+RLGY +R+AFKL++I Q+ L++PG ++DLG APG W QVA +G
Sbjct: 54 DPYVQEAKRLGYRSRAAFKLIEINNQFDLLQPGMRIVDLGAAPGGWTQVAVDMVGSKHGK 113
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VVG+D+ + + + C + AD ++ P Q ++SDM P +
Sbjct: 114 GQVVGLDILEWEGISGATC------LQADFLD-PKAPDMIKHELQGAVDAVISDMSPETT 166
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D +R +DL A VL PGG + K+ +
Sbjct: 167 GHRQTDH-------IRIIDLVEHALLFAEE-----------VLAPGGIFIAKVFK 203
>gi|161830541|ref|YP_001597195.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
RSA 331]
gi|189040687|sp|A9N8M5.1|RLME_COXBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|161762408|gb|ABX78050.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
RSA 331]
Length = 212
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 14/147 (9%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A D + + A++ GY +R+A+KLL+I ++YKL KP +V+DLG APG W QVA +GP
Sbjct: 12 AKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLVGP-- 69
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQK---GFSVILSD 120
G V+ ID+ +P + V + D N P NQ+ A+ K+ +++SD
Sbjct: 70 -KGVVIAIDL----LP-MQSMLDVIFIQGD-FNEPEIFNQLEAIVAKKTLTGQVDLVISD 122
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLA 147
M P++SGI D + S+ L A D A
Sbjct: 123 MAPNISGIKNVDQSRSLHLVELAWDCA 149
>gi|303313694|ref|XP_003066856.1| 21S rRNA (uridine(2791)-2'-O)-methyltransferase MRM2 [Coccidioides
posadasii C735 delta SOWgp]
gi|240106523|gb|EER24711.1| FtsJ-like methyltransferase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 300
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 95/233 (40%), Gaps = 75/233 (32%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++REA G +R+AFKLLQI Y++ +PG +V+DLG APG+W QVA P
Sbjct: 43 DIYWREANLRGLKSRAAFKLLQINNHYRIFEPGQTVVDLGYAPGSWSQVAVDLTHP---N 99
Query: 68 GSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLP-------------------- 100
G V+GID+ + P R+Q + + P
Sbjct: 100 GRVLGIDIIPAQPPKGVSTIQGNFLSPRIQAYIREFLRNPDRGRPLREELCSRTPQKTWT 159
Query: 101 SNQVRALSP----KQKGFS-----------------------VILSDMCPSVSGITTKDA 133
+N+V P +++ S V+LSDM + SG+ +D
Sbjct: 160 ANEVETFEPGYIDRERDVSERISREPCDEHSPQTEAGEGTVDVVLSDMMMNTSGLGFRDH 219
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
A S++L AV+ + VLKPGGH + K + + Q
Sbjct: 220 ARSMDLCNAAVNFSY------------------DVLKPGGHFICKFYQGNEDQ 254
>gi|256831249|ref|YP_003159977.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfomicrobium
baculatum DSM 4028]
gi|256580425|gb|ACU91561.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfomicrobium
baculatum DSM 4028]
Length = 204
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 31/182 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D+++++A++ Y ARS +KL ++ K +KL++ G VLDLG PG+W A + +G
Sbjct: 6 DYYFKKAKQDNYPARSVYKLQEMDKAHKLLRQGQKVLDLGACPGSWTLYAAERVG---AE 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVIN---LPSNQVRALSPKQKGFSVILSDMCPS 124
G V+GID + +P +V + D+ L ++AL+P F V++SDM P
Sbjct: 63 GRVLGID---LNMPDTRFPEQVTFLQEDIFARTPLFLGHLQALAP----FDVVMSDMAPK 115
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+G D A S++L V+ A G A L GG + K+ E D
Sbjct: 116 TTGSKFTDQARSIQL----VEAAFGVA--------------EEWLASGGTFIAKVFEGPD 157
Query: 185 AQ 186
Q
Sbjct: 158 VQ 159
>gi|344210431|ref|YP_004794751.1| ribosomal RNA large subunit methyltransferase RrmJ/FtsJ [Haloarcula
hispanica ATCC 33960]
gi|343781786|gb|AEM55763.1| ribosomal RNA large subunit methyltransferase RrmJ/FtsJ [Haloarcula
hispanica ATCC 33960]
Length = 263
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 36/192 (18%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ L+ G +V+DLG APG W+QVA +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAER 57
Query: 61 LGPLDNGGSVVGID---VKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKG--- 113
+G G++VG+D + +++ P + V+ V D+ + +++R + + G
Sbjct: 58 IGER---GTLVGVDRQTIDELEDP----EPTVEYVRGDMTEDSTKDEIREIVGESDGSGG 110
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
V++SDM P+++G D A SV L +A ++A + +L G
Sbjct: 111 PVDVVISDMAPNMTGQYDLDHARSVHLVRQAFEVA------------------TDLLDAG 152
Query: 173 GHLVIKLLESQD 184
G K+ + QD
Sbjct: 153 GDFCAKVFDGQD 164
>gi|386347941|ref|YP_006046190.1| ribosomal RNA large subunit methyltransferase E [Spirochaeta
thermophila DSM 6578]
gi|339412908|gb|AEJ62473.1| Ribosomal RNA large subunit methyltransferase E [Spirochaeta
thermophila DSM 6578]
Length = 194
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ R+A+R GY ARS +KL++IQ++Y+++ G VLDLG APG+W + +G
Sbjct: 6 DYYTRKARREGYPARSVYKLMEIQRKYRVVSRGDRVLDLGAAPGSWSKYLLSCVG---EK 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV +D+ + + S R+ D S++V+ F VI+SD PS SG
Sbjct: 63 GLVVAVDLLPLVIGS---HERLVFYQGD---FTSDEVQERIDVHAPFQVIVSDAAPSTSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A S L R + LA L PGG+LV KL + AQ
Sbjct: 117 NRGLDTARSEALVERILSLA------------------GRWLVPGGNLVAKLFQGSGAQ 157
>gi|402224150|gb|EJU04213.1| 23S ribosomal RNA methyltransferase [Dacryopinax sp. DJM-731 SS1]
Length = 257
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 22/144 (15%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV 78
Y +R+AFKLL+IQ+++ +I+ G +V+DLGCAPGAWLQVA + +G G V+G+D+
Sbjct: 48 YRSRAAFKLLEIQEKFGIIRAGDTVVDLGCAPGAWLQVAGEVVGKDGLSGRVLGVDL--- 104
Query: 79 KVPSLHCDARVQT--VSADVINLPSNQV---RAL-------SPKQKG--FSVILSDMCPS 124
L D T + D ++ S Q+ RAL P + G V+LSDM P+
Sbjct: 105 ----LRTDPLENTTIIQGDFLS-ASTQLELARALRGSSEEGEPAKLGRCVDVVLSDMAPN 159
Query: 125 VSGITTKDAALSVELGMRAVDLAL 148
+SG T D A S+ L AV +
Sbjct: 160 ISGNRTSDVANSLRLSEAAVGFTM 183
>gi|398961646|ref|ZP_10678860.1| 23S rRNA methylase [Pseudomonas sp. GM30]
gi|424921348|ref|ZP_18344709.1| 23S rRNA methylase [Pseudomonas fluorescens R124]
gi|398152229|gb|EJM40754.1| 23S rRNA methylase [Pseudomonas sp. GM30]
gi|404302508|gb|EJZ56470.1| 23S rRNA methylase [Pseudomonas fluorescens R124]
Length = 209
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ++YKLI+ G SV+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEIQEKYKLIRSGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDEVLARILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ERILKPGGNFVIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|440739558|ref|ZP_20919069.1| 23S rRNA methyltransferase J [Pseudomonas fluorescens BRIP34879]
gi|447918363|ref|YP_007398931.1| 23S rRNA methyltransferase J [Pseudomonas poae RE*1-1-14]
gi|440379390|gb|ELQ15986.1| 23S rRNA methyltransferase J [Pseudomonas fluorescens BRIP34879]
gi|445202226|gb|AGE27435.1| 23S rRNA methyltransferase J [Pseudomonas poae RE*1-1-14]
Length = 216
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ + KLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V +H D +V A+++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFVHGDFTQDSVLAEILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG ++K+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|409422615|ref|ZP_11259706.1| 23S rRNA methyltransferase J [Pseudomonas sp. HYS]
Length = 207
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 92/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ++Y++I+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKKAQKDGYRSRASYKLLEIQEKYRIIRPGMSVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V A ++ N +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTQDEVLAQILEAVGNS---------HVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D ++ L A+DLA + VLKPGG +IK+ + +
Sbjct: 125 NMSGTPAVDIPKAMFLCELALDLA------------------TRVLKPGGDFLIKIFQGE 166
>gi|429125038|ref|ZP_19185570.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira hampsonii
30446]
gi|426279100|gb|EKV56127.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira hampsonii
30446]
Length = 193
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 30/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF++++A+ Y ARS FKL + Q ++K IK +VLD+GC+PG++ Q L +
Sbjct: 6 DFYFKKAKEENYKARSVFKLEEAQNKFKFIKASDTVLDVGCSPGSFSQYM---LNKILKS 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+VVG+D+ +P+ R + D+ ++ S F V++SD P+
Sbjct: 63 GAVVGVDI----LPNSFAHQRFTFILGDI-----KEMDITSFNNTLFDVVVSDAMPN--- 110
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
TT D + R++ L LA VLK GH IK+ + +D Q
Sbjct: 111 -TTSDRETN---HFRSISLCRSIFNLA-----------KDVLKENGHFFIKVFDGKDLQ 154
>gi|433536487|ref|ZP_20492995.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
77221]
gi|432274437|gb|ELL29525.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
77221]
Length = 206
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + GP
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLAGP---S 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S+ L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSLYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|374724488|gb|EHR76568.1| ribosomal RNA large subunit methyltransferase E [uncultured marine
group II euryarchaeote]
Length = 245
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 82/142 (57%), Gaps = 10/142 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R+A+ GY +RSAFKL QIQ+++ LI+ G +LD+GC PG W QV + +G
Sbjct: 12 DSWRRQAKASGYRSRSAFKLKQIQERFNLIREGDVILDVGCHPGGWAQVGMELVG---ES 68
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSP-KQKGFSVILSDMCPSVS 126
G V+G+D++ P + + ++ D+ P Q R L+ K + + I+SD+ P+++
Sbjct: 69 GFVLGVDLE----PCQPVEGAL-LLTGDITE-PHTQERMLTELKGRPLNAIVSDISPNIT 122
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D A+++ L + D AL
Sbjct: 123 GKWDMDQAVAMTLVAQVFDFAL 144
>gi|119477411|ref|ZP_01617602.1| ribosomal RNA large subunit methyltransferase J [marine gamma
proteobacterium HTCC2143]
gi|119449337|gb|EAW30576.1| ribosomal RNA large subunit methyltransferase J [marine gamma
proteobacterium HTCC2143]
Length = 207
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+ +KLL++ ++ KLIK G +V+DLG APG W QVA + +G +
Sbjct: 18 DSYVQRAQREGYRSRACYKLLELNEKDKLIKAGMTVIDLGSAPGGWSQVAAELVG---DK 74
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D+ +K+ +L A V + D + P K +++SDM P++SG
Sbjct: 75 GRVIASDI--LKMDNL---AGVDFIQGDFTDQPVFDSIMEMLDGKEVDLVISDMAPNMSG 129
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D S+ L A+D+A VL+PGG+ V K+ + +
Sbjct: 130 MAAIDQPQSMYLVELALDMA------------------RQVLRPGGNFVAKVFQGE 167
>gi|55379460|ref|YP_137310.1| ribosomal RNA large subunit methyltransferase J [Haloarcula
marismortui ATCC 43049]
gi|74516619|sp|Q5UYP9.1|RLME_HALMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|55232185|gb|AAV47604.1| ribosomal RNA large subunit methyltransferase J [Haloarcula
marismortui ATCC 43049]
Length = 263
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ L+ G +V+DLG APG W+QVA +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVI-NLPSNQVRALSPKQKG----F 114
+G G++VG+D + + L + V+ V D+ + +++R + + G
Sbjct: 58 IGER---GTLVGVD--RQTIDDLEDPEPTVEYVRGDMTEDSTKDEIREIVGESDGSGGPV 112
Query: 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
V++SDM P+++G D A SV L +A ++A + +L GG
Sbjct: 113 DVVISDMAPNMTGQYDLDHARSVHLVRQAFEVA------------------TDLLDAGGD 154
Query: 175 LVIKLLESQD 184
K+ + QD
Sbjct: 155 FCAKVFDGQD 164
>gi|253999580|ref|YP_003051643.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus
glucosetrophus SIP3-4]
gi|253986259|gb|ACT51116.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus
glucosetrophus SIP3-4]
Length = 207
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQR GY AR+A+KL++I + +LIKPG +++DLG PG+W QVA Q L
Sbjct: 17 DEFVKRAQRDGYRARAAYKLMEIDDKDQLIKPGMTIVDLGATPGSWSQVAVQR---LKGQ 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ +D+ ++ V + D R V + +N + ++++DM P
Sbjct: 74 GRIIALDLLEMAAIPGVDFIQGDFREDAVLFQLEEKLNN---------RPIDLVIADMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++SGI++ D A + L A++ +L LKPGG+ ++K+
Sbjct: 125 NISGISSVDQANAAYLTELALEFSL------------------KWLKPGGNFLVKVF 163
>gi|448648775|ref|ZP_21679840.1| 23S rRNA methyltransferase J [Haloarcula californiae ATCC 33799]
gi|445774519|gb|EMA25535.1| 23S rRNA methyltransferase J [Haloarcula californiae ATCC 33799]
Length = 263
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ L+ G +V+DLG APG W+QVA +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVI-NLPSNQVRALSPKQKG----F 114
+G G++VG+D + + L + V+ V D+ + +++R + + G
Sbjct: 58 IGER---GTLVGVD--RQTIDDLEDPEPTVEYVRGDMTEDSTKDEIREIVGESDGSGGPV 112
Query: 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
V++SDM P+++G D A SV L +A ++A + +L GG
Sbjct: 113 DVVISDMAPNMTGQYDLDHARSVHLVRQAFEVA------------------TDLLDAGGD 154
Query: 175 LVIKLLESQD 184
K+ + QD
Sbjct: 155 FCAKVFDGQD 164
>gi|119897677|ref|YP_932890.1| ribosomal RNA large subunit methyltransferase J [Azoarcus sp. BH72]
gi|143459390|sp|A1K598.1|RLME_AZOSB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|119670090|emb|CAL94003.1| ribosomal RNA large subunit methyltransferase j [Azoarcus sp. BH72]
Length = 205
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A GY AR+A+KL++I ++ +L++PG V+DLG APG+W QVA Q +G +
Sbjct: 17 DTYVQRANAEGYRARAAYKLMEIDERDRLLRPGRVVVDLGAAPGSWCQVARQRVG---SD 73
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ +D+ + VP + T A + L S A ++LSDM P++S
Sbjct: 74 GRVLALDILPMDPVPGVDFLQGDFTEDAVLAELESRLAGA------AVDLVLSDMAPNLS 127
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G+ T D A S+ L A+D A LKPGG ++K+ + +
Sbjct: 128 GVATVDQARSIYLCELALDFA------------------RRHLKPGGQFLVKVFQGE 166
>gi|239834096|ref|ZP_04682424.1| Ribosomal RNA large subunit methyltransferase J [Ochrobactrum
intermedium LMG 3301]
gi|239822159|gb|EEQ93728.1| Ribosomal RNA large subunit methyltransferase J [Ochrobactrum
intermedium LMG 3301]
Length = 241
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 50 DPYVHKSKQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAAKVVGSTDED 109
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 110 PHVVGIDY-------LHVDPLPGVVLLEMDFLDDEAPRKLMEALGDKP---DLVISDMAA 159
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 160 PTTGHRRTDHLRTVHLCEVAADFAI------------------SVLKPGGHFLTKTFQ 199
>gi|448683222|ref|ZP_21692196.1| 23S rRNA methyltransferase J [Haloarcula japonica DSM 6131]
gi|445784207|gb|EMA35025.1| 23S rRNA methyltransferase J [Haloarcula japonica DSM 6131]
Length = 263
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ L+ G +V+DLG APG W+QVA +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVI-NLPSNQVRALSPKQKG----F 114
+G G++VG+D + + L + V+ V D+ + +++R + + G
Sbjct: 58 IGER---GTLVGVD--RQTIDDLEDPEPTVEYVRGDMTEDSTKDEIREIVGESDGSGGPV 112
Query: 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
V++SDM P+++G D A SV L +A ++A + +L GG
Sbjct: 113 DVVISDMAPNMTGQYDLDHARSVHLVRQAFEVA------------------TDLLDAGGD 154
Query: 175 LVIKLLESQD 184
K+ + QD
Sbjct: 155 FCAKVFDGQD 164
>gi|313201615|ref|YP_004040273.1| ribosomal RNA methyltransferase rrmj/ftsj [Methylovorus sp. MP688]
gi|312440931|gb|ADQ85037.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylovorus sp. MP688]
Length = 197
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQR GY AR+A+KL++I + +LIKPG +++DLG PG+W QVA Q L
Sbjct: 7 DEFVKRAQRDGYRARAAYKLMEIDDKDQLIKPGMTIVDLGATPGSWSQVAVQR---LKGQ 63
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ +D+ ++ V + D R V + +N + ++++DM P
Sbjct: 64 GRIIALDLLEMAAIPGVDFIQGDFREDAVLLQLEEKLNN---------RPIDLVIADMAP 114
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++SGI++ D A + L A++ +L LKPGG+ ++K+
Sbjct: 115 NISGISSVDQANAAYLTELALEFSL------------------KWLKPGGNFLVKVF 153
>gi|448628594|ref|ZP_21672363.1| 23S rRNA methyltransferase J [Haloarcula vallismortis ATCC 29715]
gi|445758125|gb|EMA09450.1| 23S rRNA methyltransferase J [Haloarcula vallismortis ATCC 29715]
Length = 263
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 30/189 (15%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ L+ G +V+DLG APG W+QVA +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKG----FS 115
+G G++VG+D + + + V+ V D+ + +++R + + G
Sbjct: 58 IGER---GTLVGVDRQTIDDLD-DPEPTVEYVRGDMTEDSTKDEIREIVGESDGTGGPVD 113
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175
V++SDM P+++G D A SV L +A ++A + +L GG
Sbjct: 114 VVISDMAPNMTGQYDLDHARSVHLVRQAFEVA------------------TDLLDAGGDF 155
Query: 176 VIKLLESQD 184
K+ + QD
Sbjct: 156 CAKVFDGQD 164
>gi|444312098|ref|ZP_21147693.1| 23S rRNA methyltransferase J [Ochrobactrum intermedium M86]
gi|443484543|gb|ELT47350.1| 23S rRNA methyltransferase J [Ochrobactrum intermedium M86]
Length = 240
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 49 DPYVHKSKQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAAKVVGSTDED 108
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 109 PHVVGIDY-------LHVDPLPGVVLLEMDFLDDEAPRKLMEALGDKP---DLVISDMAA 158
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 159 PTTGHRRTDHLRTVHLCEVAADFAI------------------SVLKPGGHFLTKTFQ 198
>gi|316934646|ref|YP_004109628.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris DX-1]
gi|315602360|gb|ADU44895.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris DX-1]
Length = 237
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KL +I +++L+KPG +V+DLG APG W QVA + +G +
Sbjct: 33 DPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKPGMAVVDLGAAPGGWSQVAAKKVGAAEGR 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV ID+ ++ +VP V D ++ PS R G +++SDM + +
Sbjct: 93 GKVVAIDLLEMGEVPG------VTFAQLDFLD-PSAPDRLRDMLGGGADLVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L A A+ VLKPGG + K+ +S
Sbjct: 146 GHRKTDQ-------LRIVGLVETAAMFAAE-----------VLKPGGAFLAKVFQS 183
>gi|297539174|ref|YP_003674943.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera versatilis
301]
gi|297258521|gb|ADI30366.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera versatilis
301]
Length = 206
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 19/151 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ GY AR+A+KL +I + KLIKPG +++DLG PG+W QVA Q L
Sbjct: 17 DEFVKRAQKEGYRARAAYKLTEIDDKDKLIKPGMTIVDLGSTPGSWSQVAVQR---LKGQ 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ +D+ +++ V + D R +T+ +++ ++L+ KQ ++++DM P
Sbjct: 74 GRIIALDLLEMEPIKGVEFIQGDFREETI-LEILE------KSLNGKQ--VDLVIADMAP 124
Query: 124 SVSGITTKD---AALSVELGMRAVDLALGPA 151
++SGIT D AA EL + L P+
Sbjct: 125 NMSGITIVDQAGAAYLTELALEFSKEWLKPS 155
>gi|27379081|ref|NP_770610.1| cell division protein [Bradyrhizobium japonicum USDA 110]
gi|81737558|sp|Q89N72.1|RLME_BRAJA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|27352231|dbj|BAC49235.1| cell division protein [Bradyrhizobium japonicum USDA 110]
Length = 228
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+ GY +R+AFKLL+I +++L+K G +V+DLG APG W Q+A + +G +D
Sbjct: 33 DPYVAKAKAAGYRSRAAFKLLEIDDKFRLLKHGMAVVDLGAAPGGWSQIAAKRVGSVDGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV ID+ +++P + A V+ D + + P+ L G V++SDM +
Sbjct: 93 GKVVAIDL--LEMPEI---AGVEFAQLDFMDNDAPAKLTAMLGG---GADVVMSDMAANT 144
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+G D +R V L AA A VLKPGG + K +S
Sbjct: 145 TGHRKTDQ-------LRIVGLIETAAAFACD-----------VLKPGGTFLAKTFQS 183
>gi|448638880|ref|ZP_21676550.1| 23S rRNA methyltransferase J [Haloarcula sinaiiensis ATCC 33800]
gi|445763212|gb|EMA14415.1| 23S rRNA methyltransferase J [Haloarcula sinaiiensis ATCC 33800]
Length = 263
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ L+ G +V+DLG APG W+QVA +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVI-NLPSNQVRALSPKQKG----F 114
+G G++VG+D + + L + ++ V D+ + +++R + + G
Sbjct: 58 IGER---GTLVGVD--RQTIDDLEDPEPTIEYVRGDMTEDSTKDEIREIVGESDGSGGPV 112
Query: 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
V++SDM P+++G D A SV L +A ++A + +L GG
Sbjct: 113 DVVISDMAPNMTGQYDLDHARSVHLVRQAFEVA------------------TDLLDAGGD 154
Query: 175 LVIKLLESQD 184
K+ + QD
Sbjct: 155 FCAKVFDGQD 164
>gi|404318057|ref|ZP_10965990.1| 23S rRNA methyltransferase J [Ochrobactrum anthropi CTS-325]
Length = 240
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 49 DPYVHKSRQDGYRSRAAYKLIEINDRYDLLKKGQKIIDLGAAPGGWSQIAAKIVGSTDEN 108
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
+VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 109 PNVVGIDY-------LHVDPLPGVVLLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 158
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 159 PTTGHRRTDHLRTVHLCEVAADFAI------------------SVLKPGGHFLTKTFQ 198
>gi|448664132|ref|ZP_21683935.1| 23S rRNA methyltransferase J [Haloarcula amylolytica JCM 13557]
gi|445774777|gb|EMA25791.1| 23S rRNA methyltransferase J [Haloarcula amylolytica JCM 13557]
Length = 263
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 36/192 (18%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ L+ G +V+DLG APG W+QVA +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAER 57
Query: 61 LGPLDNGGSVVGID---VKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKG--- 113
+G G++VG+D + +++ P + V+ V D+ + +++R + + G
Sbjct: 58 IGER---GTLVGVDRQTIDELEDP----EPTVEYVRGDMTEDSTKDEIREIVGEGDGSGG 110
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
V++SDM P+++G D A SV L +A ++A + +L G
Sbjct: 111 PVDVVISDMAPNMTGQYDLDHARSVHLVRQAFEVA------------------TDLLDAG 152
Query: 173 GHLVIKLLESQD 184
G K+ + QD
Sbjct: 153 GDFCAKVFDGQD 164
>gi|407008485|gb|EKE23848.1| hypothetical protein ACD_6C00312G0003 [uncultured bacterium]
Length = 216
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY AR+A+KLL++Q++YK+IKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPYVKKAQKDGYRARAAYKLLEMQEKYKIIKPGMTVVDLGAAPGSWSQIAGKLVG---DK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V L D R + V ++ + + V++SDM P
Sbjct: 81 GLLIASDILPMDALPDVTFLQGDFREEEVFQQLLEILDGRT---------VDVVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A + VL P G V+K+ +
Sbjct: 132 NTSGNKAVDQPRQIYLCELALDFA------------------NKVLGPKGQFVVKVFQ 171
>gi|398825399|ref|ZP_10583696.1| 23S rRNA methylase [Bradyrhizobium sp. YR681]
gi|398223609|gb|EJN09945.1| 23S rRNA methylase [Bradyrhizobium sp. YR681]
Length = 228
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+ +GY +R+AFKLL+I +Y+L+K G +V+DLG APG W Q+A + +G +D
Sbjct: 33 DPYVVKAKAMGYRSRAAFKLLEIDDKYRLLKHGMAVVDLGAAPGGWSQIAAKRVGSVDGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV ID+ + +P + A V D + + P+ L G +++SDM +
Sbjct: 93 GKVVAIDL--LDMPEI---AGVDFAQLDFMDNDAPAKLTAMLGG---GADIVMSDMAANT 144
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+G D +R V L AA A VLKPGG + K +S
Sbjct: 145 TGHRKTDQ-------LRIVGLIETAAAFACD-----------VLKPGGTFLAKAFQS 183
>gi|388466819|ref|ZP_10141029.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
synxantha BG33R]
gi|423693612|ref|ZP_17668132.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens SS101]
gi|387999590|gb|EIK60919.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens SS101]
gi|388010399|gb|EIK71586.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
synxantha BG33R]
Length = 216
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ + KLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V +H D V A+++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFVHGDFTEDKVLAEILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG ++K+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|429334706|ref|ZP_19215359.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas putida
CSV86]
gi|428760598|gb|EKX82859.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas putida
CSV86]
Length = 208
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 18 DPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 74
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 75 GRLIASDILEMDSIPDVTFIQGDFTQDEVLAQILEAVGNSQV----------DLVISDMA 124
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA S VL+PGG +IK+ +
Sbjct: 125 PNMSGTPAVDMPRAMFLCELALDLA------------------SRVLRPGGDFLIKIFQG 166
Query: 183 Q 183
+
Sbjct: 167 E 167
>gi|387895663|ref|YP_006325960.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens A506]
gi|387163256|gb|AFJ58455.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens A506]
Length = 216
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ + KLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V +H D V A+++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFVHGDFTEDKVLAEILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG ++K+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|126664481|ref|ZP_01735465.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter sp. ELB17]
gi|126630807|gb|EBA01421.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter sp. ELB17]
Length = 206
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 90/175 (51%), Gaps = 28/175 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ GY +RS++KLL+I + KLI+P +V+DLG APG W QVA +G +
Sbjct: 17 DPFVKKAQMDGYRSRSSYKLLEINAKDKLIQPTMTVMDLGSAPGGWSQVATDLVG---HK 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ D+ +P + A V+ + D N ++ A+ K V++SDM P++S
Sbjct: 74 GRVIASDI----LP-MDAVAGVEFIQGDFTENAVFEEIMAVLRDAK-VDVVISDMAPNIS 127
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D A S+ L A+D+A S VLKP G V K+
Sbjct: 128 GVNAADQAASMYLIELALDMA------------------SQVLKPKGSFVAKVFH 164
>gi|399154878|ref|ZP_10754945.1| 23S rRNA methyltransferase J [gamma proteobacterium SCGC
AAA007-O20]
Length = 195
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+ +KLL+I ++ ++I G +LDLG APG W QVA + +G
Sbjct: 7 DEYVKKAQKEGYRSRAVYKLLEIIEKSQIINKGDKILDLGAAPGGWSQVAAKIVG---KS 63
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D Q+V ++I L K ++LSDM P
Sbjct: 64 GQVIASDILSIEKISGVNFLQGDFTEQSVYDELITL---------TKGSSIDIVLSDMAP 114
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG + D S+ L A+DLA+ L GH ++K+ +
Sbjct: 115 NMSGQLSVDQPKSIYLAELAIDLAV------------------KTLSKNGHFIVKIFQ 154
>gi|29654650|ref|NP_820342.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii RSA 493]
gi|154707305|ref|YP_001424788.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|212212272|ref|YP_002303208.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
CbuG_Q212]
gi|81628790|sp|Q83BY4.1|RLME_COXBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040686|sp|A9KGE6.1|RLME_COXBN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703292|sp|B6IZD5.1|RLME_COXB2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|29541918|gb|AAO90856.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii RSA 493]
gi|154356591|gb|ABS78053.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|212010682|gb|ACJ18063.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
CbuG_Q212]
Length = 212
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 14/145 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A++ GY +R+A+KLL+I ++YKL KP +V+DLG APG W QVA +GP
Sbjct: 14 DPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLVGP---K 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQK---GFSVILSDMC 122
G V+ ID+ +P + V + D N P NQ+ A+ K+ +++SDM
Sbjct: 71 GVVIAIDL----LP-MQSMLDVIFIQGD-FNEPEIFNQLEAIVAKKTLTGQVDLVISDMA 124
Query: 123 PSVSGITTKDAALSVELGMRAVDLA 147
P++SGI D + S+ L A D A
Sbjct: 125 PNISGIKNVDQSRSLHLVELAWDCA 149
>gi|395787068|ref|ZP_10466669.1| ribosomal RNA large subunit methyltransferase E [Bartonella
birtlesii LL-WM9]
gi|395411492|gb|EJF78013.1| ribosomal RNA large subunit methyltransferase E [Bartonella
birtlesii LL-WM9]
Length = 242
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G ++DLG APG W QV + +G +
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQVVSRIVGSSEKK 104
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
S+VGID LH D V + D ++ P V AL K V+LSDM
Sbjct: 105 PSIVGIDY-------LHVDLLPGVVMLEMDFLHAEAPQKLVAALGEKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VLKPGGH + K +
Sbjct: 155 PTTGHRQTDHLRTIYLCEVAADFAL------------------SVLKPGGHFLAKAFQ 194
>gi|452963162|gb|EME68244.1| 23S rRNA methylase [Magnetospirillum sp. SO-1]
Length = 256
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL--D 65
D + EA+RLGY +R+AFK++Q+ +++ ++KPG V+DLG APG W QVA + +G L
Sbjct: 53 DPYVHEAKRLGYRSRAAFKMIQLDERFHILKPGLRVVDLGAAPGGWTQVAVEKVGALKPQ 112
Query: 66 NGGSVVGIDVKKVKVPSLHCD--ARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDM 121
GG VVGID+ L D T+ D + + P AL V+LSDM
Sbjct: 113 GGGKVVGIDI-------LEWDPLPGAITLQGDFLADDAPDRLKEALGGPA---DVVLSDM 162
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G + D + L A+ AL +L PGG V K+ +
Sbjct: 163 AAPTTGHPSTDHLRIIGLVEVALHFAL------------------EILTPGGTFVAKVFQ 204
>gi|325265685|ref|ZP_08132374.1| ribosomal RNA large subunit methyltransferase J [Kingella
denitrificans ATCC 33394]
gi|324982816|gb|EGC18439.1| ribosomal RNA large subunit methyltransferase J [Kingella
denitrificans ATCC 33394]
Length = 213
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KLL+I ++ KLIK G+ + DLG APG+W QVA + +GP
Sbjct: 25 DPYVQRAQKDGYRARAAYKLLEINEKDKLIKSGTLLADLGSAPGSWSQVAAKLVGP---S 81
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ ++ V + D R V NL N + +++ DM P
Sbjct: 82 GQVFALDILPMERIDGVDFIQGDFREDEVLRQFENLLGN---------RPLDLVICDMAP 132
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A LKPGG +IK+ +
Sbjct: 133 NMSGNAVTDQARSYYLCELALDFA------------------RNHLKPGGSFLIKVFQ 172
>gi|85715667|ref|ZP_01046647.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter sp. Nb-311A]
gi|85697606|gb|EAQ35483.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter sp. Nb-311A]
Length = 226
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R G+ +R+AFKL+++ +++ +KP +V+DLG APG W QVA Q +G +
Sbjct: 33 DPYVAQAKREGWRSRAAFKLIEMDDKHRFLKPAMTVVDLGAAPGGWSQVAAQRVGATEGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-VILSDMCPSVS 126
G V+ ID+ +++P + V A + L +N L G + V+LSDM + +
Sbjct: 93 GKVIAIDL--LEMPEI-----VGVTFARLDFLDNNAPDKLLAMMGGAADVVLSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L AA A+ VL+PGG + K+ +S
Sbjct: 146 GHRKTDQ-------LRMVGLVESAAAFAAD-----------VLRPGGTFIAKVFQS 183
>gi|389606113|emb|CCA45026.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis alpha522]
Length = 206
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I + KLIKPG+ + DLG APG+W QVA + GP
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSWSQVAAKLAGP---S 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S+ L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSLYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|257454690|ref|ZP_05619946.1| ribosomal RNA large subunit methyltransferase J [Enhydrobacter
aerosaccus SK60]
gi|257448000|gb|EEV22987.1| ribosomal RNA large subunit methyltransferase J [Enhydrobacter
aerosaccus SK60]
Length = 210
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY AR+A+KLL+I ++ +LIK G +V+DLG APG+W QVA + +G +
Sbjct: 24 DHYVKLAQRDGYRARAAYKLLEINEKLQLIKKGMTVVDLGSAPGSWSQVAGKLVG---DT 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V + D R Q V +++ ++ K V+LSDM P
Sbjct: 81 GKLIASDILPMDTLENVTFIQGDFREQAVFDNIMAEVAD---------KKVEVVLSDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SG + D + L A+D A VL GG LVIK+ + +
Sbjct: 132 NTSGFSAVDQPRMIYLCELAMDFA------------------EQVLPEGGTLVIKVFQGE 173
>gi|445062546|ref|ZP_21374913.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira hampsonii
30599]
gi|444506071|gb|ELV06466.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira hampsonii
30599]
Length = 193
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 30/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF++++A+ Y ARS FKL + Q ++K IK +VLD+GC+PG++ Q L +
Sbjct: 6 DFYFKKAKEENYKARSVFKLEEAQNKFKFIKASDTVLDVGCSPGSFSQYM---LNKILKS 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+ +P+ R + D+ ++ S F V++SD P+
Sbjct: 63 GCVVGVDI----LPNSFAHQRFTFILGDI-----KEMDITSFNNTLFDVVVSDAMPN--- 110
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
TT D + R++ L LA VLK GH IK+ + +D Q
Sbjct: 111 -TTSDRETN---HFRSISLCRAIFNLA-----------KDVLKENGHFFIKVFDGKDLQ 154
>gi|153209329|ref|ZP_01947348.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
'MSU Goat Q177']
gi|165924044|ref|ZP_02219876.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
Q321]
gi|212218759|ref|YP_002305546.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
CbuK_Q154]
gi|226703291|sp|B6J802.1|RLME_COXB1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120575400|gb|EAX32024.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
'MSU Goat Q177']
gi|165916503|gb|EDR35107.1| ribosomal RNA large subunit methyltransferase J [Coxiella burnetii
Q321]
gi|212013021|gb|ACJ20401.1| 23S rRNA Um2552 2'-O-methyltransferase [Coxiella burnetii
CbuK_Q154]
Length = 212
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 14/145 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A++ GY +R+A+KLL+I ++YKL KP +V+DLG APG W QVA +GP
Sbjct: 14 DPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLVGP---K 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQK---GFSVILSDMC 122
G V+ ID+ +P + V + D N P NQ+ A+ K+ +++SDM
Sbjct: 71 GVVIAIDL----LP-IQSMLDVIFIQGD-FNEPEIFNQLEAIVAKKTLTGQVDLVISDMA 124
Query: 123 PSVSGITTKDAALSVELGMRAVDLA 147
P++SGI D + S+ L A D A
Sbjct: 125 PNISGIKNVDQSRSLHLVELAWDCA 149
>gi|344339771|ref|ZP_08770699.1| Ribosomal RNA large subunit methyltransferase E [Thiocapsa marina
5811]
gi|343800507|gb|EGV18453.1| Ribosomal RNA large subunit methyltransferase E [Thiocapsa marina
5811]
Length = 206
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 30/176 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+A+KLL+IQ++ ++ +PG VLDLG APG+W Q+A + +G
Sbjct: 17 DPYVKRAQREGYRSRAAYKLLEIQEKDRIFRPGMRVLDLGAAPGSWSQIAARLVGA---R 73
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
GSVV +D+ L D A V + D + + ++LSDM P++
Sbjct: 74 GSVVALDL-------LPMDPLAGVVVMQGDFREPEILDRLCATLGGESLDLVLSDMAPNI 126
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G+T D S+ L A+DLA L+PGG LV+K+ +
Sbjct: 127 TGMTVVDQPRSMYLVELALDLA------------------RSRLQPGGALVVKVFQ 164
>gi|326797289|ref|YP_004315109.1| ribosomal RNA large subunit methyltransferase E [Marinomonas
mediterranea MMB-1]
gi|326548053|gb|ADZ93273.1| Ribosomal RNA large subunit methyltransferase E [Marinomonas
mediterranea MMB-1]
Length = 206
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+++KLL++ + KLIKPG+ V+DLG APG W Q+A + +G N
Sbjct: 17 DPYVKQAQVDGYRSRASYKLLELNDKDKLIKPGNLVMDLGSAPGGWSQIASKLVG---NK 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D+ + + SL A V+ + D ++ V++SDM P++SG
Sbjct: 74 GKVIASDI--LPMDSL---AGVEFIQGDFTEQSVFDEIMVAVNGAPVDVVVSDMAPNLSG 128
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
I + D A S+ L A+D+A + VLKP G +K+ +
Sbjct: 129 IASSDQASSIYLVELALDMA------------------TQVLKPKGSFAVKVFHGE 166
>gi|213402435|ref|XP_002171990.1| AdoMet-dependent rRNA methyltransferase spb1 [Schizosaccharomyces
japonicus yFS275]
gi|212000037|gb|EEB05697.1| AdoMet-dependent rRNA methyltransferase spb1 [Schizosaccharomyces
japonicus yFS275]
Length = 795
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 26/180 (14%)
Query: 5 GAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL 64
G D +Y+ A+ GY +R+AFKL+Q+ K+Y ++ V+DL APG WLQVA ++ P
Sbjct: 11 GRLDKWYKLAKEQGYRSRAAFKLVQLNKKYNFLEKARVVIDLCAAPGGWLQVASKTCKP- 69
Query: 65 DNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
G +VG+D+ +K P +C V+ +++D +Q+R K V++ D P+
Sbjct: 70 --GSLIVGVDLAPIK-PIPNCITFVEDITSDRCR---SQLRGYLKTWKA-DVVVHDGAPN 122
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
V +DA EL + A+ LA L PGG V K+ S+D
Sbjct: 123 VGAAWLQDAYGQAELVLMAMKLA------------------CEFLGPGGTFVTKVFRSKD 164
>gi|255020638|ref|ZP_05292700.1| cell division protein FtsJ [Acidithiobacillus caldus ATCC 51756]
gi|254969874|gb|EET27374.1| cell division protein FtsJ [Acidithiobacillus caldus ATCC 51756]
Length = 207
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 91/181 (50%), Gaps = 31/181 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A R GY +R+++KLL+IQ++ L++ G VLDLG APG W QVA +G +
Sbjct: 17 DPFVQRAAREGYRSRASYKLLEIQEKDGLLRRGQRVLDLGAAPGGWTQVAAAIVG---SE 73
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
G +V +D + VP + D+ + Q RA P +G +ILSDM P++
Sbjct: 74 GRIVAVDRLAMDPVPG------ALVIQGDIYDEAVIAQCRAAFP--EGVDLILSDMAPNL 125
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
SGI + D A +V L A+DLA L PGG L++K+ A
Sbjct: 126 SGIASADQARAVALCELALDLA------------------REWLVPGGKLLMKVFMGAGA 167
Query: 186 Q 186
Q
Sbjct: 168 Q 168
>gi|153011133|ref|YP_001372347.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ochrobactrum anthropi
ATCC 49188]
gi|189040317|sp|A6X5L4.1|RLME_OCHA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|151563021|gb|ABS16518.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ochrobactrum anthropi
ATCC 49188]
Length = 240
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 49 DPYVHKSRQDGYRSRAAYKLIEINDRYDLLKKGQKIIDLGAAPGGWSQIAAKIVGSTDEN 108
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 109 PHVVGIDY-------LHVDPLPGVVLLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 158
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 159 PTTGHRRTDHLRTVHLCEVAADFAI------------------SVLKPGGHFLTKTFQ 198
>gi|339053445|ref|ZP_08648154.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [gamma proteobacterium IMCC2047]
gi|330721347|gb|EGG99422.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [gamma proteobacterium IMCC2047]
Length = 207
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 28/175 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++Q+ GY +R+++KLL++Q + KL KPG SVLDLG APG W QVA + +G +
Sbjct: 17 DQYVKKSQQDGYRSRASYKLLELQDKDKLFKPGMSVLDLGSAPGGWSQVAVELVG---DK 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVS 126
G VV D+ +P + A V D + +Q+ + + K +++SDM P++S
Sbjct: 74 GRVVASDI----LP-MEPIAGADFVEGDFTEMEVYDQILNVLGEDK-VDLVISDMAPNMS 127
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G++ D ++ L AVD+A +LKPGG L+ K+
Sbjct: 128 GVSAVDQPKAMYLVELAVDMA------------------DQILKPGGALIAKVFH 164
>gi|340781167|ref|YP_004747774.1| cell division protein FtsJ [Acidithiobacillus caldus SM-1]
gi|340555320|gb|AEK57074.1| cell division protein FtsJ [Acidithiobacillus caldus SM-1]
Length = 233
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 35/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A R GY +R+++KLL+IQ++ L++ G VLDLG APG W QVA +G +
Sbjct: 43 DPFVQRAAREGYRSRASYKLLEIQEKDGLLRRGQRVLDLGAAPGGWTQVAAAIVG---SE 99
Query: 68 GSVVGIDVKKVK-VPS---LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V +D + VP + D + V A Q RA P +G +ILSDM P
Sbjct: 100 GRIVAVDRLAMDPVPGALVIQGDIYDEAVIA--------QCRAAFP--EGVDLILSDMAP 149
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SGI + D A +V L A+DLA L PGG L++K+
Sbjct: 150 NLSGIASADQARAVALCELALDLA------------------REWLVPGGKLLMKVFMGA 191
Query: 184 DAQ 186
AQ
Sbjct: 192 GAQ 194
>gi|410902857|ref|XP_003964910.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Takifugu rubripes]
Length = 238
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 88/185 (47%), Gaps = 29/185 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D + + + + RSAFKLL+I ++ L++PG V+D G APGAW QVA Q +
Sbjct: 37 DPYVKASHAQHFRCRSAFKLLEIDDKFHLLQPGYGVVDCGAAPGAWSQVAVQRVNSDGAD 96
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-VILSDM 121
P G+VVGID+ + +P L D S DV + PS + L G + VILSDM
Sbjct: 97 PESPFGAVVGIDL--LNIPPL--DGAHFLSSHDVTD-PSTHTKLLELLPGGQAHVILSDM 151
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+ SG D + + +DLA +LKPGG L+ K +
Sbjct: 152 APNASGFKEMDHERLIRMCFSLLDLA------------------EKILKPGGSLICKYWD 193
Query: 182 SQDAQ 186
AQ
Sbjct: 194 GALAQ 198
>gi|261313253|ref|ZP_05952450.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis M163/99/10]
gi|261302279|gb|EEY05776.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis M163/99/10]
Length = 232
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 49 DPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAARIVGSTDEN 108
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 109 PQVVGIDY-------LHVDPLPGVILLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 158
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 159 PTTGHRRTDHLRTVHLCEVAADFAV------------------SVLKPGGHFLTKTFQ 198
>gi|408479046|ref|ZP_11185265.1| 23S rRNA methyltransferase J [Pseudomonas sp. R81]
Length = 216
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q + KL +PG SV+DLG APG W QVA + +G
Sbjct: 17 DPYVKKAQKDGYRSRASYKLLELQDKDKLFRPGMSVIDLGAAPGGWSQVASRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V +H D V A+++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFVHGDFTQDAVLAEILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG ++K+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|71083352|ref|YP_266071.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762218|ref|ZP_01264183.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
HTCC1002]
gi|83305663|sp|Q4FMX1.1|RLME_PELUB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|71062465|gb|AAZ21468.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
HTCC1062]
gi|91718020|gb|EAS84670.1| FtsJ-like methyltransferase [Candidatus Pelagibacter ubique
HTCC1002]
Length = 203
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 83/141 (58%), Gaps = 12/141 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R++Q GY ARSA+KL++I +++K+ K G SV+DLG +PG+W Q +++
Sbjct: 17 DIYVRQSQVDGYRARSAYKLIEIDEKFKIFKNGISVIDLGASPGSWSQYISRTV----KS 72
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
G +V ID+K ++ + +Q + D +L S + ++AL + V++SDM + +
Sbjct: 73 GRLVSIDLKGME----EIENTIQ-IKGDFTDLESQEKIKALFKSK--VDVVVSDMAVNTT 125
Query: 127 GITTKDAALSVELGMRAVDLA 147
GI DA + EL M A++ +
Sbjct: 126 GIKDIDAIYTGELAMEAMNFS 146
>gi|49474969|ref|YP_033010.1| cell division protein ftsJ [Bartonella henselae str. Houston-1]
gi|81648296|sp|Q6G4Z3.1|RLME_BARHE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|49237774|emb|CAF26967.1| Cell division protein ftsJ [Bartonella henselae str. Houston-1]
Length = 247
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G ++DLG APG W QV+ +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINQRYKFLKKGQKIIDLGAAPGGWCQVSGCIVGSSDEK 104
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
SVVGID LH D V + D ++ P + AL K V+LSDM
Sbjct: 105 PSVVGIDY-------LHVDPLPGVVMLEMDFLHSDAPQKLIDALGTKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VLKPGGH + K +
Sbjct: 155 PTTGHRQTDHLRTIYLCEVAADFAL------------------SVLKPGGHFLAKAFQ 194
>gi|189044091|sp|A5VUZ8.2|RLME_BRUO2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
Length = 240
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 49 DPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAARIVGSTDEN 108
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 109 PQVVGIDY-------LHVDPLPGVILLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 158
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 159 PTTGHRRTDHLRTVHLCEVAADFAV------------------SVLKPGGHFLTKTFQ 198
>gi|395765708|ref|ZP_10446300.1| ribosomal RNA large subunit methyltransferase E [Bartonella sp.
DB5-6]
gi|395410903|gb|EJF77445.1| ribosomal RNA large subunit methyltransferase E [Bartonella sp.
DB5-6]
Length = 240
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 84/183 (45%), Gaps = 42/183 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G V+DLG APG W QVA + +G +
Sbjct: 45 DPYVHQSKIDGYRSRAAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQVAGRLVGSSNEK 104
Query: 68 GSVVGID---------VKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
SVVGID V +++ LH DA P + AL K V+L
Sbjct: 105 PSVVGIDYLPVDPLPGVVTLEIDFLHADA------------PQKLIDALGVKP---DVVL 149
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM +G D +V L A D AL VLKP GH + K
Sbjct: 150 SDMAAPTTGHRRTDHLRTVHLCEVAADFAL------------------SVLKPRGHFLAK 191
Query: 179 LLE 181
+
Sbjct: 192 AFQ 194
>gi|254468491|ref|ZP_05081897.1| ribosomal RNA large subunit methyltransferase J [beta
proteobacterium KB13]
gi|207087301|gb|EDZ64584.1| ribosomal RNA large subunit methyltransferase J [beta
proteobacterium KB13]
Length = 205
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ G+ +R+A+K +++ +Y LI+P ++DLG APG+W Q A + N
Sbjct: 17 DEFVKRAQKDGFRSRAAYKFIEMNDKYHLIRPNDRIVDLGSAPGSWSQAASSLIS---NN 73
Query: 68 GSVVGID---VKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G + ID + VK + + D R ++ + L N +++SDM P
Sbjct: 74 GKIFAIDLLPMDDVKNTTFIQGDFRELSILQKLEELLENT---------AVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++SGI ++D A+ +L DL+L A S LKP GH ++K
Sbjct: 125 NISGIKSRDQAMINDLN----DLSLKFA--------------SDWLKPKGHFMVKTF 163
>gi|319942668|ref|ZP_08016975.1| ribosomal RNA large subunit methyltransferase E [Sutterella
wadsworthensis 3_1_45B]
gi|319803751|gb|EFW00686.1| ribosomal RNA large subunit methyltransferase E [Sutterella
wadsworthensis 3_1_45B]
Length = 217
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 84/150 (56%), Gaps = 21/150 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + ++ GY ARS +KL+++ ++ L+KPGS+V+DLG APG+W QV + L D
Sbjct: 21 DPFVKRSRAEGYRARSVYKLIELDEKEHLLKPGSTVVDLGSAPGSWTQVVRERLAGPDGS 80
Query: 68 --GSVVGIDVKKV----KVPSLHCDARVQTVS---ADVINLPSNQVRALSPKQKGFSVIL 118
G ++ +D+ + V L D R Q V+ A+++N ++V V+L
Sbjct: 81 VRGRIIAMDILPMDPIDDVYFLQGDFREQEVADKLAEILN--GDKV----------DVVL 128
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLAL 148
SDM P++SGI DAA S+ L A++ L
Sbjct: 129 SDMAPNLSGIAAADAARSLLLNELALEFCL 158
>gi|395647264|ref|ZP_10435114.1| 23S rRNA methyltransferase J [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 216
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q + KL +PG SV+DLG APG W QVA + +G
Sbjct: 17 DPYVKKAQKDGYRSRASYKLLELQDKDKLFRPGMSVIDLGAAPGGWSQVASRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V +H D V A+++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFVHGDFTQDAVLAEILQAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG ++K+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|148558273|ref|YP_001257653.1| putative ribosomal RNA large subunit methyltransferase J [Brucella
ovis ATCC 25840]
gi|148369558|gb|ABQ62430.1| putative ribosomal RNA large subunit methyltransferase J [Brucella
ovis ATCC 25840]
Length = 215
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 24 DPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAARIVGSTDEN 83
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 84 PQVVGIDY-------LHVDPLPGVILLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 133
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 134 PTTGHRRTDHLRTVHLCEVAADFAV------------------SVLKPGGHFLTKTFQ 173
>gi|291288275|ref|YP_003505091.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Denitrovibrio
acetiphilus DSM 12809]
gi|290885435|gb|ADD69135.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Denitrovibrio
acetiphilus DSM 12809]
Length = 197
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 28/178 (15%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
D FY++A+ G+ +R+A+KL+++ K++ L + G +VLD+GCAPG W+QV Q
Sbjct: 5 KDAFYKKAKLEGFKSRAAYKLIELNKKHALFRSGDAVLDVGCAPGGWIQVVLQQ-----K 59
Query: 67 GGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
+VVG+D+ ++V +L D R + D+ + V + G+ ++SD P+ S
Sbjct: 60 KCTVVGVDL--LEVLNL-TDTRFTFIQGDITEQET--VDKVLDACDGYDCVISDAAPNTS 114
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G D SV+L V L A VLK GG+ K+ E +D
Sbjct: 115 GSKLLDHVNSVDL----VRLIFYFA--------------KTVLKKGGNFACKVFEGED 154
>gi|17988942|ref|NP_541575.1| 23S ribsomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|161620740|ref|YP_001594626.1| ribosomal RNA large subunit methyltransferase J [Brucella canis
ATCC 23365]
gi|163844815|ref|YP_001622470.1| hypothetical protein BSUIS_B0670 [Brucella suis ATCC 23445]
gi|189022722|ref|YP_001932463.1| 23S ribsomal RNA methyltransferase [Brucella abortus S19]
gi|225629167|ref|ZP_03787200.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti str.
Cudo]
gi|225686460|ref|YP_002734432.1| Ribosomal RNA large subunit methyltransferase J [Brucella
melitensis ATCC 23457]
gi|237817019|ref|ZP_04596011.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
str. 2308 A]
gi|256262400|ref|ZP_05464932.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 2 str. 63/9]
gi|260544705|ref|ZP_05820526.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
NCTC 8038]
gi|260564762|ref|ZP_05835247.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 1 str. 16M]
gi|260568039|ref|ZP_05838508.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
4 str. 40]
gi|260756558|ref|ZP_05868906.1| 23S rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260759989|ref|ZP_05872337.1| 23S rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260763229|ref|ZP_05875561.1| 23S rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260882376|ref|ZP_05893990.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
bv. 9 str. C68]
gi|261216133|ref|ZP_05930414.1| 23S rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|261220515|ref|ZP_05934796.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
B1/94]
gi|261318645|ref|ZP_05957842.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis B2/94]
gi|261750386|ref|ZP_05994095.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
5 str. 513]
gi|261753643|ref|ZP_05997352.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
3 str. 686]
gi|261756885|ref|ZP_06000594.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
F5/99]
gi|265986444|ref|ZP_06099001.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis M292/94/1]
gi|265989986|ref|ZP_06102543.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 1 str. Rev.1]
gi|265992903|ref|ZP_06105460.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 3 str. Ether]
gi|265996137|ref|ZP_06108694.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M490/95/1]
gi|294853531|ref|ZP_06794203.1| cell division protein methyltransferase FtsJ [Brucella sp. NVSL
07-0026]
gi|297249509|ref|ZP_06933210.1| cell division protein methyltransferase FtsJ [Brucella abortus bv.
5 str. B3196]
gi|306840657|ref|ZP_07473408.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO2]
gi|306845790|ref|ZP_07478358.1| Ribosomal RNA large subunit methyltransferase J [Brucella inopinata
BO1]
gi|376271106|ref|YP_005114151.1| 23S ribsomal RNA methyltransferase [Brucella abortus A13334]
gi|376276655|ref|YP_005152716.1| 23S ribsomal RNA methyltransferase [Brucella canis HSK A52141]
gi|384213189|ref|YP_005602272.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M5-90]
gi|384410291|ref|YP_005598911.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M28]
gi|384446809|ref|YP_005661027.1| Ribosomal RNA large subunit methyltransferase J [Brucella
melitensis NI]
gi|423168636|ref|ZP_17155338.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI435a]
gi|423171931|ref|ZP_17158605.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI474]
gi|423174338|ref|ZP_17161008.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI486]
gi|423176215|ref|ZP_17162881.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI488]
gi|423181360|ref|ZP_17168000.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI010]
gi|423184493|ref|ZP_17171129.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI016]
gi|423187643|ref|ZP_17174256.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI021]
gi|423190064|ref|ZP_17176673.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI259]
gi|81850447|sp|Q8YCD5.1|RLME_BRUME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83305655|sp|Q578H4.2|RLME_BRUAB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83305656|sp|Q8FVY1.2|RLME_BRUSU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|143459528|sp|Q2YKU4.2|RLME_BRUA2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189044087|sp|A9MBW8.1|RLME_BRUC2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189044088|sp|A9WYY2.1|RLME_BRUSI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703283|sp|B2SAY0.1|RLME_BRUA1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|254809548|sp|C0RLJ5.1|RLME_BRUMB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|17984775|gb|AAL53839.1| 23S ribsomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
gi|161337551|gb|ABX63855.1| Ribosomal RNA large subunit methyltransferase J [Brucella canis
ATCC 23365]
gi|163675538|gb|ABY39648.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|189021296|gb|ACD74017.1| 23S ribsomal RNA methyltransferase [Brucella abortus S19]
gi|225615663|gb|EEH12712.1| Ribosomal RNA large subunit methyltransferase J [Brucella ceti str.
Cudo]
gi|225642565|gb|ACO02478.1| Ribosomal RNA large subunit methyltransferase J [Brucella
melitensis ATCC 23457]
gi|237787832|gb|EEP62048.1| Ribosomal RNA large subunit methyltransferase J [Brucella abortus
str. 2308 A]
gi|260097976|gb|EEW81850.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
NCTC 8038]
gi|260152405|gb|EEW87498.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 1 str. 16M]
gi|260154704|gb|EEW89785.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
4 str. 40]
gi|260670307|gb|EEX57247.1| 23S rRNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260673650|gb|EEX60471.1| 23S rRNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260676666|gb|EEX63487.1| 23S rRNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260871904|gb|EEX78973.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
bv. 9 str. C68]
gi|260917740|gb|EEX84601.1| 23S rRNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|260919099|gb|EEX85752.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
B1/94]
gi|261297868|gb|EEY01365.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis B2/94]
gi|261736869|gb|EEY24865.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
F5/99]
gi|261740139|gb|EEY28065.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
5 str. 513]
gi|261743396|gb|EEY31322.1| ribosomal RNA large subunit methyltransferase J [Brucella suis bv.
3 str. 686]
gi|262550434|gb|EEZ06595.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M490/95/1]
gi|262763773|gb|EEZ09805.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 3 str. Ether]
gi|263000655|gb|EEZ13345.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 1 str. Rev.1]
gi|263092133|gb|EEZ16430.1| ribosomal RNA large subunit methyltransferase J [Brucella
melitensis bv. 2 str. 63/9]
gi|264658641|gb|EEZ28902.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis M292/94/1]
gi|294819186|gb|EFG36186.1| cell division protein methyltransferase FtsJ [Brucella sp. NVSL
07-0026]
gi|297173378|gb|EFH32742.1| cell division protein methyltransferase FtsJ [Brucella abortus bv.
5 str. B3196]
gi|306273682|gb|EFM55520.1| Ribosomal RNA large subunit methyltransferase J [Brucella inopinata
BO1]
gi|306289350|gb|EFM60589.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. BO2]
gi|326410838|gb|ADZ67902.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M28]
gi|326554129|gb|ADZ88768.1| 23S ribsomal RNA methyltransferase [Brucella melitensis M5-90]
gi|349744806|gb|AEQ10348.1| Ribosomal RNA large subunit methyltransferase J [Brucella
melitensis NI]
gi|363402278|gb|AEW19247.1| 23S ribsomal RNA methyltransferase [Brucella abortus A13334]
gi|363405029|gb|AEW15323.1| 23S ribsomal RNA methyltransferase [Brucella canis HSK A52141]
gi|374536353|gb|EHR07873.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI474]
gi|374537842|gb|EHR09352.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI435a]
gi|374540339|gb|EHR11841.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI486]
gi|374545950|gb|EHR17410.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI010]
gi|374546793|gb|EHR18252.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI016]
gi|374554817|gb|EHR26227.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI488]
gi|374555447|gb|EHR26856.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI021]
gi|374556104|gb|EHR27509.1| ribosomal RNA large subunit methyltransferase E [Brucella abortus
bv. 1 str. NI259]
Length = 240
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 49 DPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAARIVGSTDEN 108
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 109 PQVVGIDY-------LHVDPLPGVILLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 158
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 159 PTTGHRRTDHLRTVHLCEVAADFAV------------------SVLKPGGHFLTKTFQ 198
>gi|395645356|ref|ZP_10433216.1| Ribosomal RNA large subunit methyltransferase E [Methanofollis
liminatans DSM 4140]
gi|395442096|gb|EJG06853.1| Ribosomal RNA large subunit methyltransferase E [Methanofollis
liminatans DSM 4140]
Length = 200
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 29/184 (15%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
M+ D + +A+R G+ AR+A+KLL+IQ ++ +I+ +V+DLG APG+WLQV ++
Sbjct: 1 MTSQWTRDKYSNKAKREGFRARAAYKLLEIQNRHPVIREDDTVVDLGAAPGSWLQV-LRT 59
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
L G+++G+D+ + SL V TV D P Q + S++ D
Sbjct: 60 L----TKGTIIGVDLN--PIASLEG---VITVVGD-FTTPEVQEQVKELAGGAISIVTCD 109
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
P +SG T+ D A ++ LG A++ A+ VLK GG+ + K
Sbjct: 110 ASPKLSGATSYDQARAIGLGEEALNFAV------------------SVLKDGGNFICKTF 151
Query: 181 ESQD 184
+ +D
Sbjct: 152 QGED 155
>gi|372270323|ref|ZP_09506371.1| ribosomal RNA large subunit methyltransferase E [Marinobacterium
stanieri S30]
Length = 206
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL + ++ KLIKPG V+DLG APG W Q+A + +G
Sbjct: 17 DPFVKQAQKDGYRSRASYKLLALNEKDKLIKPGMLVIDLGSAPGGWSQIASELVG---EK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V + D ++V +++ + ++ + V++SDM P
Sbjct: 74 GKVIASDILPMDALPDVDFIQGDFTEESVFDEIMGVIAD---------RPVDVVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ T D A S+ L A+D+A VLKP G V K + +
Sbjct: 125 NLSGVATADQAGSIYLIELALDMA------------------QQVLKPKGSFVAKAFQGE 166
>gi|406596690|ref|YP_006747820.1| 23S rRNA methyltransferase J [Alteromonas macleodii ATCC 27126]
gi|407683647|ref|YP_006798821.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'English
Channel 673']
gi|407687631|ref|YP_006802804.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407699955|ref|YP_006824742.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'Black Sea
11']
gi|406374011|gb|AFS37266.1| 23S rRNA methyltransferase J [Alteromonas macleodii ATCC 27126]
gi|407245258|gb|AFT74444.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'English
Channel 673']
gi|407249102|gb|AFT78287.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'Black Sea
11']
gi|407291011|gb|AFT95323.1| 23S rRNA methyltransferase J [Alteromonas macleodii str. 'Balearic
Sea AD45']
Length = 209
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A + G+ +R+ +KL +IQK+ KLIKPG +++DLG APG W Q+A Q +G DN
Sbjct: 20 DHYVQKANKEGWRSRAIYKLEEIQKKDKLIKPGMTLVDLGAAPGGWSQLAAQLVG--DN- 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G V+ D+ V V L D R V ++N + N V ++LSDM
Sbjct: 77 GQVIACDILPMDPIVGVDFLQGDFREDAVLDALLNRIGGNTV----------DIVLSDMA 126
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+++G + D + S+ L A+D+ VLKPGG VIK+ +
Sbjct: 127 PNLAGNASVDQSRSMYLCELALDMC------------------HQVLKPGGSFVIKVFQG 168
Query: 183 Q 183
+
Sbjct: 169 E 169
>gi|265985356|ref|ZP_06098091.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
83/13]
gi|306837434|ref|ZP_07470310.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. NF
2653]
gi|264663948|gb|EEZ34209.1| ribosomal RNA large subunit methyltransferase J [Brucella sp.
83/13]
gi|306407477|gb|EFM63680.1| Ribosomal RNA large subunit methyltransferase J [Brucella sp. NF
2653]
Length = 240
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 49 DPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAARIVGSTDEN 108
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 109 PQVVGIDY-------LHVDPLPGVILLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 158
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 159 PTTGHRRTDHLRTVHLCEVAADFAV------------------SVLKPGGHFLTKTFQ 198
>gi|23500428|ref|NP_699868.1| ribosomal RNA large subunit methyltransferase J [Brucella suis
1330]
gi|62317468|ref|YP_223321.1| ribosomal RNA large subunit methyltransferase J [Brucella abortus
bv. 1 str. 9-941]
gi|83269449|ref|YP_418740.1| cell division protein FtsJ [Brucella melitensis biovar Abortus
2308]
gi|256015456|ref|YP_003105465.1| ribosomal RNA large subunit methyltransferase J [Brucella microti
CCM 4915]
gi|340792469|ref|YP_004757933.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis B2/94]
gi|376278648|ref|YP_005108681.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
suis VBI22]
gi|384223209|ref|YP_005614374.1| ribosomal RNA large subunit methyltransferase J [Brucella suis
1330]
gi|23464051|gb|AAN33873.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
suis 1330]
gi|62197661|gb|AAX75960.1| hypothetical ribosomal RNA large subunit methyltransferase J
[Brucella abortus bv. 1 str. 9-941]
gi|82939723|emb|CAJ12720.1| Cell division protein FtsJ [Brucella melitensis biovar Abortus
2308]
gi|255998116|gb|ACU49803.1| ribosomal RNA large subunit methyltransferase J [Brucella microti
CCM 4915]
gi|340560928|gb|AEK56165.1| ribosomal RNA large subunit methyltransferase J [Brucella
pinnipedialis B2/94]
gi|343384657|gb|AEM20148.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
suis 1330]
gi|358260086|gb|AEU07819.1| ribosomal RNA large subunit methyltransferase J, putative [Brucella
suis VBI22]
Length = 215
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 24 DPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAARIVGSTDEN 83
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 84 PQVVGIDY-------LHVDPLPGVILLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 133
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 134 PTTGHRRTDHLRTVHLCEVAADFAV------------------SVLKPGGHFLTKTFQ 173
>gi|390341347|ref|XP_787303.2| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Strongylocentrotus purpuratus]
Length = 269
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL-----G 62
D F ++A+ Y ARSA+KLL+I +Y+L+KPG++V+D G APG+W QVA +
Sbjct: 64 DPFVKQARADSYRARSAYKLLEIDSRYRLLKPGNTVIDCGAAPGSWTQVAVERTNSALQN 123
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-VILSDM 121
P G V+ +D+ ++ + + +D + P+ Q R L K S +LSDM
Sbjct: 124 PAKPRGIVIAVDLLHMQP----IEGAIMLGQSDFTD-PAVQERILGHLDKRLSDAVLSDM 178
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+ +GI D + L A+ A + VL GH ++KL +
Sbjct: 179 APNATGIHAMDHEQIIALARTAMGFA------------------TKVLCENGHFLVKLWD 220
Query: 182 SQDA 185
D
Sbjct: 221 GHDT 224
>gi|89095222|ref|ZP_01168145.1| cell division protein FtsJ [Neptuniibacter caesariensis]
gi|89080519|gb|EAR59768.1| cell division protein FtsJ [Oceanospirillum sp. MED92]
Length = 206
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 97/178 (54%), Gaps = 30/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ LGY +R++FKL+++ ++ KL +PG +V+DLG APG W Q+A + +G +
Sbjct: 17 DHYVKKSKELGYRSRASFKLIELDEKDKLFQPGMTVVDLGAAPGGWSQIAAERVG---DH 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV D+ +P + A V+ V D + + ++AL + +++SDM P++
Sbjct: 74 GRVVASDI----LP-MDSMAGVEFVQGDFTEEEVLNRILKALGDEPA--DLVISDMAPNM 126
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
SG++ D ++ L A+D+A VLKPGG+ V K+ + +
Sbjct: 127 SGMSAVDQPAAMYLVELALDMA------------------REVLKPGGNFVAKVFQGE 166
>gi|150400217|ref|YP_001323984.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus vannielii
SB]
gi|189040315|sp|A6USA0.1|RLME_METVS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|150012920|gb|ABR55372.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanococcus vannielii
SB]
Length = 259
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 29/176 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+R Y +R+ +KL Q+ +++ +IK + V+DLGCAPG WLQ A G
Sbjct: 15 DPYYNLAKRKNYRSRATYKLFQLNEKFNIIKEKNVVVDLGCAPGGWLQAARDMTG---EE 71
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
G +VGID++++K +P + A V D+ + + +++ + P++ VI+ D P++
Sbjct: 72 GFIVGIDLQQIKPLPYENVIA----VKGDMTDEETLKKIQDILPEKP--DVIICDASPNI 125
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
SG+ D S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 126 SGVWDVDHTRSLELTTMAL------------------MTATKMLKKGGNFVVKVFQ 163
>gi|399546762|ref|YP_006560070.1| ribosomal RNA large subunit methyltransferase E [Marinobacter sp.
BSs20148]
gi|399162094|gb|AFP32657.1| Ribosomal RNA large subunit methyltransferase E [Marinobacter sp.
BSs20148]
Length = 206
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 17/168 (10%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ GY +RS++KLL+I + KLI+P +V+DLG APG W QVA +G +
Sbjct: 17 DPFVKKAQMDGYRSRSSYKLLEINAKDKLIQPTMTVMDLGSAPGGWSQVATDLVG---HK 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ D+ +P + A V+ + D N ++ A+ K V++SDM P++S
Sbjct: 74 GRVIASDI----LP-MDAVAGVEFIQGDFTENAVFEEIMAVLRDAK-VDVVISDMAPNIS 127
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
G+ D A S+ L ++LAL +AS V S S + V GG+
Sbjct: 128 GVNAADQAASMYL----IELALD---MASQVLKSKGSFVAKVFHGGGY 168
>gi|395791528|ref|ZP_10470986.1| ribosomal RNA large subunit methyltransferase E [Bartonella
alsatica IBS 382]
gi|395408891|gb|EJF75501.1| ribosomal RNA large subunit methyltransferase E [Bartonella
alsatica IBS 382]
Length = 242
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G ++DLG APG W QVA + + D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQVAGRIVETSDKK 104
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCP 123
SVVGID LH D V + D ++ ++Q + AL + V+LSDM
Sbjct: 105 PSVVGIDY-------LHVDRLPGVVMLEMDFLHADASQKLIDALGERP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VLKPGGH + K +
Sbjct: 155 PTTGHRQTDHLRTIFLCEVAADFAL------------------SVLKPGGHFLAKAFQ 194
>gi|237748683|ref|ZP_04579163.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
formigenes OXCC13]
gi|229380045|gb|EEO30136.1| ribosomal RNA large subunit methyltransferase J [Oxalobacter
formigenes OXCC13]
Length = 215
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN- 66
D F + AQ+ GY AR+A+KL++I + LIKPG ++DLG PG+W Q + LG
Sbjct: 17 DPFVKMAQKEGYRARAAYKLIEIDEDAHLIKPGQVIVDLGSTPGSWSQYVVRKLGSSGAN 76
Query: 67 --GGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
G+V+G+D+ ++ V D R ++V ++ NL + L +LSD
Sbjct: 77 QLNGTVIGLDLLPMEPIEGVHFFQGDFREESVLQELENLLQGRKADL---------VLSD 127
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
M P++SGI + DAA L A+D A LKP G L++K
Sbjct: 128 MAPNLSGIASADAARVEYLMELALDFA------------------QAHLKPSGALLVK 167
>gi|336122117|ref|YP_004576892.1| ribosomal RNA large subunit methyltransferase E
[Methanothermococcus okinawensis IH1]
gi|334856638|gb|AEH07114.1| Ribosomal RNA large subunit methyltransferase E
[Methanothermococcus okinawensis IH1]
Length = 288
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 39/181 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y+ A++ Y +R+++KLLQ+ +++ +IK V+DLGCAPG WLQ A +G G
Sbjct: 15 DFYYKLAKKNKYRSRASYKLLQLNEKFNIIKENDVVVDLGCAPGGWLQAARDIVG---EG 71
Query: 68 GSVVGIDVKKVK------VPSLHCD-ARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
G V G+D++ VK V ++ D + +T+ + LPS ++ D
Sbjct: 72 GFVAGVDLQGVKPLKYENVIAIKGDMTKKETIEKLMKLLPSKA-----------DAVICD 120
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
P++SG+ +D S+EL A+ T + +LK G+ V+K+
Sbjct: 121 ASPNISGVWERDHTRSLELTTIAL------------------ITATKLLKKDGNFVVKVF 162
Query: 181 E 181
+
Sbjct: 163 Q 163
>gi|332530812|ref|ZP_08406738.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hylemonella gracilis
ATCC 19624]
gi|332039724|gb|EGI76124.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hylemonella gracilis
ATCC 19624]
Length = 219
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL--- 64
D + + AQ+ GY AR+A+KL +I + +L+KPG ++DLGCAPGAW Q + L P
Sbjct: 21 DPYVKLAQKEGYRARAAYKLKEIDETLRLVKPGQVIVDLGCAPGAWSQYLRRRLAPQGAA 80
Query: 65 --DNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
+ GSV+G+D+ ++ V + D R V A Q+ AL + + +++
Sbjct: 81 VGELNGSVIGLDLLPMEPIEGVQYIQGDFREAAVLA--------QLEALL-QGRPVDLVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SG+ + D A EL A+D + LKP G LV K
Sbjct: 132 SDMAPNLSGVASVDTARVEELVALAIDFC------------------NAHLKPSGTLVAK 173
Query: 179 LLE 181
+
Sbjct: 174 VFH 176
>gi|167035711|ref|YP_001670942.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida GB-1]
gi|189040323|sp|B0KHY6.1|RLME_PSEPG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|166862199|gb|ABZ00607.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida GB-1]
Length = 208
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 18 DPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 74
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++ D+ +++ S+ A V + D + Q + +++SDM P++SG
Sbjct: 75 GRLIASDI--LEMDSI---ADVTFIQGDFTHDEVLQRILEAVGDSHVDLVISDMAPNMSG 129
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
D ++ L A+DLA + VLKPGG +IK+ + +
Sbjct: 130 TPAVDIPRAMFLCELALDLA------------------TRVLKPGGDFLIKIFQGE 167
>gi|296108439|ref|YP_003620140.1| cell division protein methyltransferase FtsJ [Legionella
pneumophila 2300/99 Alcoy]
gi|295650341|gb|ADG26188.1| cell division protein methyltransferase FtsJ [Legionella
pneumophila 2300/99 Alcoy]
Length = 206
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL +I + LIKPG +V+DLG APG W Q A + +
Sbjct: 17 DVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQYASEK---MKGS 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V +D+ + V + D R V ++INL Q+ ++LSDM P
Sbjct: 74 GRLVALDILPMDALPNVEFILGDFREDNVLQELINLIP---------QRTLDLLLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG +A+ + M V+LA A +LKPGG++++K+
Sbjct: 125 NMSG----SSAIDIPRAMYLVELAFDFA--------------EKMLKPGGNMLVKIFH 164
>gi|225619180|ref|YP_002720406.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira
hyodysenteriae WA1]
gi|259494561|sp|C0QX75.1|RLME_BRAHW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|225213999|gb|ACN82733.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira
hyodysenteriae WA1]
Length = 193
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 30/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF++++A+ Y ARS FKL + Q ++K IK +VLD+GC+PG++ Q L +
Sbjct: 6 DFYFKKAKEENYKARSVFKLEEAQNKFKFIKASDNVLDVGCSPGSFSQYM---LNKILKS 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
GSVVG+D+ +P+ R + D+ ++ + F V++SD P+ +
Sbjct: 63 GSVVGVDI----LPNSFAHQRFTFILGDIKDMD-----VTTFNNTLFDVVVSDAMPNTTS 113
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
+ S+ L DLA VLK G+ IK+ + +D Q
Sbjct: 114 DRETNHFRSISLCRSIFDLA------------------KEVLKENGNFFIKVFDGKDLQ 154
>gi|83312878|ref|YP_423142.1| 23S rRNA methylase [Magnetospirillum magneticum AMB-1]
gi|123540815|sp|Q2W0P2.1|RLME_MAGSA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|82947719|dbj|BAE52583.1| 23S rRNA methylase [Magnetospirillum magneticum AMB-1]
Length = 244
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL--D 65
D + EA+RLGY +R+AFK++Q+ +++ ++KPG V+DLG APG W QVA + +G L
Sbjct: 48 DPYVHEAKRLGYRSRAAFKMIQLDERFHILKPGLRVVDLGAAPGGWTQVAVEKVGALKPK 107
Query: 66 NGGSVVGIDVKKVKVPSLHCD--ARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDM 121
GG VVG+D+ L D T+ D + + P AL V+LSDM
Sbjct: 108 GGGKVVGMDI-------LEWDPLPGAITLQGDFLADDAPDRLKEALGGPA---DVVLSDM 157
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G + D + L A+ AL VL PGG V K+ +
Sbjct: 158 AAPTTGHPSTDHLRIIGLVEVALHFAL------------------EVLTPGGTFVAKVFQ 199
>gi|26991402|ref|NP_746827.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida
KT2440]
gi|148549787|ref|YP_001269889.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida F1]
gi|386013922|ref|YP_005932199.1| ribosomal RNA large subunit methyltransferase E [Pseudomonas putida
BIRD-1]
gi|395445474|ref|YP_006385727.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida ND6]
gi|397693415|ref|YP_006531295.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas putida
DOT-T1E]
gi|421523915|ref|ZP_15970542.1| 23S rRNA methyltransferase J [Pseudomonas putida LS46]
gi|81439657|sp|Q88DV0.1|RLME_PSEPK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040322|sp|A5W995.1|RLME_PSEP1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|24986472|gb|AAN70291.1|AE016670_1 ribosomal RNA large subunit methyltransferase J [Pseudomonas putida
KT2440]
gi|148513845|gb|ABQ80705.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas putida F1]
gi|313500628|gb|ADR61994.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas putida
BIRD-1]
gi|388559471|gb|AFK68612.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida ND6]
gi|397330145|gb|AFO46504.1| Ribosomal RNA large subunit methyltransferase J [Pseudomonas putida
DOT-T1E]
gi|402752160|gb|EJX12667.1| 23S rRNA methyltransferase J [Pseudomonas putida LS46]
Length = 207
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 18 DPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 74
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++ D+ +++ S+ A V + D + Q + +++SDM P++SG
Sbjct: 75 GRLIASDI--LEMDSI---ADVTFIQGDFTHDEVLQRILEAVGDSHVDLVISDMAPNMSG 129
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
D ++ L A+DLA + VLKPGG +IK+ + +
Sbjct: 130 TPAVDIPRAMFLCELALDLA------------------TRVLKPGGDFLIKIFQGE 167
>gi|261323077|ref|ZP_05962274.1| ribosomal RNA large subunit methyltransferase J [Brucella neotomae
5K33]
gi|261299057|gb|EEY02554.1| ribosomal RNA large subunit methyltransferase J [Brucella neotomae
5K33]
Length = 240
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 49 DPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAARIVGSTDEN 108
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 109 PQVVGIDY-------LHVDPLPGVILLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 158
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D A+ VLKPGGH + K +
Sbjct: 159 PTAGHRRTDHLRTVHLCEVAADFAV------------------SVLKPGGHFLTKTFQ 198
>gi|399521923|ref|ZP_10762588.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399109958|emb|CCH39148.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 207
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ + ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQDKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ + N V +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTDDAVFAQILEAIGENPV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ T D A ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGVRTADQARAMYLCELALDLA------------------GRVLRPGGDFLIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|395780998|ref|ZP_10461442.1| ribosomal RNA large subunit methyltransferase E [Bartonella
washoensis 085-0475]
gi|395416873|gb|EJF83235.1| ribosomal RNA large subunit methyltransferase E [Bartonella
washoensis 085-0475]
Length = 242
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G ++DLG APG W QVA + +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQVAGRIVGSSDEK 104
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
SVVGID LH D V + D ++ P + AL K V+LSDM
Sbjct: 105 PSVVGIDY-------LHVDPLPGVVMLEMDFLHADAPQKLIDALGTKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VL+P GH + K +
Sbjct: 155 PTTGHRQTDHLRTIYLCEVAADFAL------------------SVLRPRGHFLAKAFQ 194
>gi|393764342|ref|ZP_10352954.1| 23S rRNA methyltransferase J [Alishewanella agri BL06]
gi|392604972|gb|EIW87871.1| 23S rRNA methyltransferase J [Alishewanella agri BL06]
Length = 209
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+LG +R++FKL +IQ+Q KLI+PG +V+DLG APG+W Q G +
Sbjct: 20 DHFVQKAQKLGLRSRASFKLEEIQQQDKLIRPGMNVVDLGSAPGSWSQYVA---GIVGQQ 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V+ D+ + V L D R + V+N +++ K V+LSDM P
Sbjct: 77 GTVIACDILPMDPLAGVAFLQGDFREEA----VLNALLSRIGG-----KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG T D A S+ L A+D+ VLK G V+K+ +
Sbjct: 128 NMSGNDTTDQARSIYLVELALDMC------------------HKVLKQNGSFVVKVFQ 167
>gi|397668467|ref|YP_006510004.1| 23S rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila]
gi|189040698|sp|A5IHX0.2|RLME_LEGPC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|395131878|emb|CCD10171.1| 23S rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila]
Length = 206
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL +I + LIKPG +V+DLG APG W Q A + +
Sbjct: 17 DVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQYASEK---MKGS 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V +D+ + V + D R V ++INL Q+ ++LSDM P
Sbjct: 74 GRLVALDILPMDALPNVEFILGDFREDNVLQELINLIP---------QRTLDLLLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG +A+ + M V+LA A +LKPGG++++K+
Sbjct: 125 NMSG----SSAIDIPRAMYLVELAFDFA--------------EKMLKPGGNMLVKIFH 164
>gi|442320408|ref|YP_007360429.1| ribosomal RNA large subunit methyltransferase J [Myxococcus
stipitatus DSM 14675]
gi|441488050|gb|AGC44745.1| ribosomal RNA large subunit methyltransferase J [Myxococcus
stipitatus DSM 14675]
Length = 208
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 9/141 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ G ARSAFK+ ++ K++ ++K G VLDLG APG +LQ+ ++G
Sbjct: 9 DHYFQKAKQEGLRARSAFKVDELIKRFPMVKKGHVVLDLGAAPGGFLQILADAVG---GA 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSVS 126
G V+G+D+ ++ P VQT DV L + L+ G F ++SDM P S
Sbjct: 66 GRVIGVDIVAIR-P--FTQRHVQTAVFDV--LADDFDAKLAAMYDGPFDAVISDMAPKTS 120
Query: 127 GITTKDAALSVELGMRAVDLA 147
GI D A S+ L +A+++A
Sbjct: 121 GIKATDEARSLRLAGKALEVA 141
>gi|395498839|ref|ZP_10430418.1| 23S rRNA methyltransferase J [Pseudomonas sp. PAMC 25886]
gi|395797971|ref|ZP_10477258.1| 23S rRNA methyltransferase J [Pseudomonas sp. Ag1]
gi|421140203|ref|ZP_15600223.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens BBc6R8]
gi|395337963|gb|EJF69817.1| 23S rRNA methyltransferase J [Pseudomonas sp. Ag1]
gi|404508595|gb|EKA22545.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
fluorescens BBc6R8]
Length = 216
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ KLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V +H D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFVHGDFTQDEVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG ++K+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|319763183|ref|YP_004127120.1| ribosomal RNA methyltransferase rrmj/ftsj [Alicycliphilus
denitrificans BC]
gi|330825246|ref|YP_004388549.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
denitrificans K601]
gi|317117744|gb|ADV00233.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
denitrificans BC]
gi|329310618|gb|AEB85033.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Alicycliphilus
denitrificans K601]
Length = 220
Score = 79.7 bits (195), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 40/185 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGP---- 63
D + + AQ+ GY AR+A+KL +I +Q+ LIKPG V+DLG +PGAW Q + L P
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDEQFGLIKPGHVVVDLGSSPGAWSQYVRRRLSPGGAA 80
Query: 64 ---LDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116
LD G+++ +D+ ++ V L D R + V A + + + + V
Sbjct: 81 MGQLD--GTIISLDILPMEPIEGVTFLQGDFRDEEVLARLQQ---------AVQGRPVDV 129
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176
++SDM P++SG+ + DA L AVD A+ LKP G LV
Sbjct: 130 VVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHH------------------LKPDGALV 171
Query: 177 IKLLE 181
+KL
Sbjct: 172 VKLFH 176
>gi|405374376|ref|ZP_11028840.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Chondromyces apiculatus DSM 436]
gi|397086881|gb|EJJ17959.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Myxococcus sp. (contaminant ex DSM
436)]
Length = 206
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 84/142 (59%), Gaps = 11/142 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ G ARSAFK+ ++ K++ ++K G VLDLG APG +LQ+ ++GP
Sbjct: 9 DHYFQKAKQEGLRARSAFKVDELIKRFPMVKKGHVVLDLGAAPGGFLQILADAVGP---K 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRA-LSPKQKG-FSVILSDMCPSV 125
G V+G+D+ ++ S V +V+++ ++ A L+ G F ++SDM P
Sbjct: 66 GRVIGVDIVPIRPFSQPF------VRTEVMDVLADDFDAKLAAIYDGPFDAVISDMAPKT 119
Query: 126 SGITTKDAALSVELGMRAVDLA 147
SGI D A S+ L +A+++A
Sbjct: 120 SGIKATDEARSLRLAGKALEIA 141
>gi|68472105|ref|XP_719848.1| potential tRNA anticodon loop methyltransferase [Candida albicans
SC5314]
gi|68472340|ref|XP_719731.1| potential tRNA anticodon loop methyltransferase [Candida albicans
SC5314]
gi|46441562|gb|EAL00858.1| potential tRNA anticodon loop methyltransferase [Candida albicans
SC5314]
gi|46441688|gb|EAL00983.1| potential tRNA anticodon loop methyltransferase [Candida albicans
SC5314]
gi|238881121|gb|EEQ44759.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Candida albicans WO-1]
Length = 293
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ +++ L K + V+DL APG+W QV Q LGP
Sbjct: 10 DLYYRRAKEEGWRARSAFKLLQLNEEFNLFKDITRVVDLCAAPGSWSQVLSQKLGP---D 66
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
++V +D++ P D V T+ AD+ + + Q + + SD P V+G
Sbjct: 67 STIVAVDLQ----PMTPIDG-VTTIQADITHPKTLQRIRDCFGGEPADFVCSDGAPDVTG 121
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D + +L + A+ L + +LKPGG V K+ +D
Sbjct: 122 LHDLDEYIQSQLILSALQLT------------------TCLLKPGGSFVAKIFRGRD 160
>gi|163852846|ref|YP_001640889.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
extorquens PA1]
gi|163664451|gb|ABY31818.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
extorquens PA1]
Length = 239
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 88/175 (50%), Gaps = 29/175 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY +R+AFKLL+I +++KL+KPG ++DLG APG W QVA + LG
Sbjct: 39 DPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIVDLGAAPGGWSQVAARILG---ES 95
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID+ +++ +P ++ D ++ PS R ++LSDM + +
Sbjct: 96 GRIVGIDLLEIEPMPG------ATFITLDFLD-PSAPERLTELLGGRADLVLSDMAANTT 148
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D +R + LA AA A +L PGG + K+ +
Sbjct: 149 GHKKTDH-------LRIIGLAETAAAFARE-----------ILAPGGAYLAKVFQ 185
>gi|330801002|ref|XP_003288520.1| hypothetical protein DICPUDRAFT_10143 [Dictyostelium purpureum]
gi|325081423|gb|EGC34939.1| hypothetical protein DICPUDRAFT_10143 [Dictyostelium purpureum]
Length = 191
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 40/177 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EA+ L V+R+AFKL+ I KQ +L+KPG V+DLG +PG+W Q+A + +
Sbjct: 8 DIYVKEAKALSLVSRAAFKLININKQLRLLKPGMIVVDLGASPGSWTQIA---RAEVKDN 64
Query: 68 GSVVGIDVK-----KVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
G V+ +D+ K P + D + ++ + ILSDM
Sbjct: 65 GLVISVDINSNFQLTEKAPFIQGDFTKKETQDKILEFADS--------------ILSDMA 110
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
P GI D + +EL A++ AL VLKPGG V K+
Sbjct: 111 PHYCGIPQVDHSRLIELQTTALNFAL------------------QVLKPGGSFVCKV 149
>gi|54298779|ref|YP_125148.1| ribosomal RNA large subunit methyltransferase (cell division
protein FtsJ) [Legionella pneumophila str. Paris]
gi|81369695|sp|Q5X1A0.1|RLME_LEGPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83305660|sp|Q5ZRT1.2|RLME_LEGPH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|53752564|emb|CAH13996.1| Ribosomal RNA large subunit methyltransferase (Cell division
protein FtsJ) [Legionella pneumophila str. Paris]
Length = 206
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL +I + LIKPG +V+DLG APG W Q A + +
Sbjct: 17 DVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQYASEK---MRGS 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V +D+ + V + D R V ++INL Q+ ++LSDM P
Sbjct: 74 GRLVALDILPMDALPNVEFILGDFREDNVLQELINLIP---------QRTLDLLLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG +A+ + M V+LA A +LKPGG++++K+
Sbjct: 125 NMSG----SSAIDIPRAMYLVELAFDFA--------------EKMLKPGGNMLVKIFH 164
>gi|91788714|ref|YP_549666.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polaromonas sp. JS666]
gi|123059751|sp|Q129M4.1|RLME_POLSJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91697939|gb|ABE44768.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polaromonas sp. JS666]
Length = 247
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 32/183 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL--- 64
D + + AQ+ GY AR+A+KL +I + LIKPG V+DLG PGAW Q + L P
Sbjct: 37 DPYVKLAQKEGYRARAAYKLKEIDETLGLIKPGDCVVDLGSTPGAWSQYVRRKLSPTGAA 96
Query: 65 --DNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
+ G ++G+D+ ++ V + D R V + Q A Q +++
Sbjct: 97 AGELNGRIIGLDMLPMEPIEGVAFIQGDFREPEVLQKL-----EQALATDKGQVKVDLVI 151
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SGI + DAA V L AV+ A +KP G LV+K
Sbjct: 152 SDMAPNLSGIESADAARIVHLVELAVEFA------------------QNRMKPDGTLVVK 193
Query: 179 LLE 181
L
Sbjct: 194 LFH 196
>gi|170746591|ref|YP_001752851.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
radiotolerans JCM 2831]
gi|170653113|gb|ACB22168.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
radiotolerans JCM 2831]
Length = 241
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 90/174 (51%), Gaps = 27/174 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY +R+A+KLL+I ++YKL++PG ++DLG APG W QVA + +GP
Sbjct: 42 DPYVARAKREGYRSRAAYKLLEIDERYKLLRPGQKIVDLGAAPGGWSQVAARVVGPT--- 98
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVGID+ +++ P A V+ ++ D ++ P R +++SDM + +G
Sbjct: 99 GRVVGIDLLEIE-PM----AGVEFITLDFLD-PEAPDRLTGMLGGPADLVMSDMAANATG 152
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D +R + LA A A +L PGG + K+L+
Sbjct: 153 HKKTDH-------LRIIGLAETAAEFARE-----------ILGPGGAYLAKVLQ 188
>gi|333901775|ref|YP_004475648.1| ribosomal RNA large subunit methyltransferase E [Pseudomonas fulva
12-X]
gi|333117040|gb|AEF23554.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas fulva
12-X]
Length = 210
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL++Q++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEVQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V A ++ NQ +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIDNQ---------PVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA VLKPGG +IK+ + +
Sbjct: 125 NMSGVRAADQPRAMYLCELALDLA------------------GRVLKPGGDFLIKIFQGE 166
>gi|445496130|ref|ZP_21463174.1| ribosomal RNA large subunit methyltransferase E [Janthinobacterium
sp. HH01]
gi|444792291|gb|ELX13838.1| ribosomal RNA large subunit methyltransferase E [Janthinobacterium
sp. HH01]
Length = 233
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+AFKL +I + LIKPG ++DLGC PG+W Q A + L + G
Sbjct: 17 DPYVKLAQKEGYRARAAFKLKEIDEDENLIKPGQVIVDLGCTPGSWGQYARRKLAGKEGG 76
Query: 68 ---GSVVGIDVKKVK-VPSLHC---DARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
G+++G+D+ ++ + H D R +V+ L + V+ + ++LSD
Sbjct: 77 GINGTLIGLDLLPMEPIADFHFIQGDFR----EPEVLQLLEDHVKG-----QKVDLVLSD 127
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
M P++SGI DAA L +DLA+ LKP G L++K
Sbjct: 128 MAPNLSGIPDSDAARMEHL----IDLAI--------------EFSQAHLKPTGSLLVK 167
>gi|255732766|ref|XP_002551306.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Candida tropicalis
MYA-3404]
gi|240131047|gb|EER30608.1| tRNA (uridine-2'-O-)-methyltransferase TRM7 [Candida tropicalis
MYA-3404]
Length = 293
Score = 79.3 bits (194), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 87/182 (47%), Gaps = 36/182 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ +++ L + + V+DL APG+W QV Q LGP
Sbjct: 10 DLYYRRAKEEGWRARSAFKLLQLNEEFNLFEDLTRVVDLCAAPGSWSQVLSQKLGP---N 66
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRAL-----SPKQKGFSVILSDMC 122
++V +D++ P D V T+ AD+ + P R L P + SD
Sbjct: 67 STIVAVDLQ----PMTPIDG-VTTIQADITH-PRTLQRILDCFGGEPA----DFVCSDGA 116
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P V+G+ D + +L + A+ L + +LKPGG V K+
Sbjct: 117 PDVTGLHDLDEYIQAQLVLSALQLT------------------TCLLKPGGKFVAKIFRG 158
Query: 183 QD 184
+D
Sbjct: 159 RD 160
>gi|410861593|ref|YP_006976827.1| 23S rRNA methyltransferase J [Alteromonas macleodii AltDE1]
gi|410818855|gb|AFV85472.1| 23S rRNA methyltransferase J [Alteromonas macleodii AltDE1]
Length = 209
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A + G+ +R+ +KL +IQK+ KLIKPG +++DLG APG W Q+A Q +G
Sbjct: 20 DHYVQKANKEGWRSRAIYKLEEIQKKDKLIKPGMTLVDLGAAPGGWSQLAAQLVG---EN 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G V+ D+ V V L D R V ++N + N V ++LSDM
Sbjct: 77 GQVIACDILPMDPIVGVDFLQGDFREDAVLDALLNRIGGNTV----------DIVLSDMA 126
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+++G + D + S+ L A+D+ VLKPGG VIK+ +
Sbjct: 127 PNLAGNASVDQSRSMYLCELALDMC------------------HQVLKPGGSFVIKVFQG 168
Query: 183 Q 183
+
Sbjct: 169 E 169
>gi|90424572|ref|YP_532942.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisB18]
gi|123275111|sp|Q212R3.1|RLME_RHOPB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|90106586|gb|ABD88623.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisB18]
Length = 238
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 85/179 (47%), Gaps = 32/179 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R G +R+A+KL++I +Y +KPG +V+DLG APG W QVA + +G D
Sbjct: 33 DPYVAQAKRDGLRSRAAYKLIEIDDKYHFLKPGIAVVDLGAAPGGWSQVAAKRVGAADGR 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRA----LSPKQKGFSVILSDMCP 123
G VV ID+ +++P + V D L A LS V+LSDM
Sbjct: 93 GKVVAIDL--LEMPEI--------VGVDFAQLDFLHAEAPAKLLSMIGGKVDVVLSDMAA 142
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+ +G D +R V L AA A VLKPGG V K+ +S
Sbjct: 143 NTTGHRKTDQ-------LRIVGLVEDAAAFACD-----------VLKPGGTFVAKVFQS 183
>gi|395767048|ref|ZP_10447586.1| ribosomal RNA large subunit methyltransferase E [Bartonella doshiae
NCTC 12862]
gi|395415660|gb|EJF82094.1| ribosomal RNA large subunit methyltransferase E [Bartonella doshiae
NCTC 12862]
Length = 242
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G ++DLG APG W QVA + +G +
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKIIDLGAAPGGWCQVAVRIVGSSNEQ 104
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCP 123
SVVGID LH D V + D + N P + AL K V+LSDM
Sbjct: 105 PSVVGIDY-------LHVDPLPGVVMLEMDFLHANAPQKLIDALGTKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VLKPGG + K +
Sbjct: 155 PTTGHRQTDHLRTIYLCEVAADFAL------------------SVLKPGGVFLAKAFQ 194
>gi|254482484|ref|ZP_05095723.1| ribosomal RNA large subunit methyltransferase J [marine gamma
proteobacterium HTCC2148]
gi|214037175|gb|EEB77843.1| ribosomal RNA large subunit methyltransferase J [marine gamma
proteobacterium HTCC2148]
Length = 208
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 30/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++A+R GY +R+ +KLL++Q + L+KPG +V+DLG APG W QV+ +G +
Sbjct: 18 DLFVQQAKRDGYRSRACYKLLELQDKDHLMKPGMTVVDLGSAPGGWSQVSADLVG---HK 74
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV D+ LH D A V+ + D + + + +++SDM P++
Sbjct: 75 GRVVASDI-------LHMDNLADVEFIQGDFTEDAVFERILQAIDGESVDLVVSDMAPNM 127
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
SG+ D S+ L A+D+A VL PGG V K+ + +
Sbjct: 128 SGVAAVDQPGSMYLVELALDMA------------------RRVLSPGGSFVTKVFQGE 167
>gi|448679948|ref|ZP_21690387.1| 23S rRNA methyltransferase J [Haloarcula argentinensis DSM 12282]
gi|445769596|gb|EMA20669.1| 23S rRNA methyltransferase J [Haloarcula argentinensis DSM 12282]
Length = 263
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 32/190 (16%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ L+ G +V+DLG APG W+QV +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVTAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVI-NLPSNQVRALSPKQKG----F 114
+G G++VG+D + + L + V+ V D+ + +++R + + G
Sbjct: 58 IGER---GTLVGVD--RQTIDDLEDPEPTVEYVRGDMTEDGTKDEIREIVGESDGSGGPV 112
Query: 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
V++SDM P+++G D A SV L +A ++A + +L GG
Sbjct: 113 DVVISDMAPNMTGQYDLDHARSVHLVRQAFEVA------------------TDLLDAGGD 154
Query: 175 LVIKLLESQD 184
K+ + QD
Sbjct: 155 FCAKVFDGQD 164
>gi|330504835|ref|YP_004381704.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
NK-01]
gi|328919121|gb|AEB59952.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
NK-01]
Length = 207
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 96/180 (53%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DK 73
Query: 68 GSVVGIDVKKVKVPSLHCDA--RVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ L DA V + D + + + + A+ + +++SDM P
Sbjct: 74 GRLIASDI-------LEMDAIPDVTFIQGDFTDDAVFTRLLEAIG--ENPVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ T D A ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 125 NMSGVRTADQARAMYLCELALDLA------------------GRVLRPGGDFLIKIFQGE 166
>gi|353240472|emb|CCA72340.1| probable SPB1-required for ribosome synthesis, putative methylase
[Piriformospora indica DSM 11827]
Length = 1111
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 10/148 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D FY+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKFYKLAKEQGYRARSAFKLIQLNKKYNFLESARCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P +VG+D+ +K +P RV T +AD+ + K V+L D
Sbjct: 68 PP---NSIIVGVDLVPIKPIP------RVTTFAADITTSNCRSLLRGELKDWKADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 119 GAPNVGTAWIQDAYSQAELVLMSLRLAV 146
>gi|238021385|ref|ZP_04601811.1| hypothetical protein GCWU000324_01284 [Kingella oralis ATCC 51147]
gi|237868365|gb|EEP69371.1| hypothetical protein GCWU000324_01284 [Kingella oralis ATCC 51147]
Length = 206
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 34/183 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KLL+I ++ KLIK G+ + DLG APG+W Q+A + +G
Sbjct: 18 DPYVKRAQKDGYRARAAYKLLEINEKDKLIKQGTVLADLGSAPGSWSQIAAKLVGKT--- 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R + V A+ L N RAL +++ DM P
Sbjct: 75 GKVFALDILPMDALDGVDFIQGDFREEAVLAEFERLLDN--RAL-------DLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG T D A S L A+D A G LK GG ++K+ +
Sbjct: 126 NMSGNDTIDQARSFYLCELALDFA------------------RGHLKTGGAFLVKVFQGS 167
Query: 184 DAQ 186
Q
Sbjct: 168 GYQ 170
>gi|319404629|emb|CBI78235.1| cell division protein ftsJ [Bartonella rochalimae ATCC BAA-1498]
Length = 240
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 30/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +RSA+KL++I ++YK+ K G ++DLG APG W QVA + + D
Sbjct: 43 DPYVHQSKVDGYRSRSAYKLIEIDERYKIFKKGQKIIDLGAAPGGWCQVAARKVESSDQK 102
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPS 124
SVVGID + +P V + D + N P + AL + ++LSDM
Sbjct: 103 PSVVGIDYLPMDPLPG------VVILEMDFLHENAPQKLMNALGEQP---DIVLSDMAAP 153
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V L A D AL VLKPGGH + K +
Sbjct: 154 TTGHRQTDHLRTVYLCEVAADFAL------------------SVLKPGGHFLAKAFQ 192
>gi|312963090|ref|ZP_07777575.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas
fluorescens WH6]
gi|311282601|gb|EFQ61197.1| Ribosomal RNA large subunit methyltransferase E [Pseudomonas
fluorescens WH6]
Length = 216
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL++Q + KL +PG SV+DLG APG W QVA + +G
Sbjct: 17 DPYVKKAQKDGYRSRASYKLLELQDKDKLFRPGMSVIDLGAAPGGWSQVASRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V +H D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFVHGDFTQDAVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG ++K+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|407770371|ref|ZP_11117741.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407286649|gb|EKF12135.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 268
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 30/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EA+RLGY +R+AFKL++I Q+ L++PG ++DLG APG W QVA +G
Sbjct: 54 DPYVQEAKRLGYRSRAAFKLIEINNQFDLLRPGMRIVDLGAAPGGWTQVAVDMVGSKQGR 113
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCPS 124
G VVG+D+ + + + C + AD ++ P +AL ++SDM P
Sbjct: 114 GQVVGLDILEWEGLSGATC------LQADFLDPAAPDMIKQALDGP---VDAVISDMSPE 164
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +R +DL A VL PGG + K+ +
Sbjct: 165 TTGHRQTDH-------IRIIDLVEHALLFAEE-----------VLAPGGIFIAKVFK 203
>gi|358638079|dbj|BAL25376.1| cell division protein [Azoarcus sp. KH32C]
Length = 212
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 24/148 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A+ GY +R+A+KL++I ++ L+KPG V+DLG APG+W QVA + +G
Sbjct: 22 DAYVQRAKSEGYRSRAAYKLMEIDERDHLLKPGMVVVDLGAAPGSWCQVATRRVGA---A 78
Query: 68 GSVVGIDVKKVKVPS--------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
G V +D+ V+ + DA ++ + A + P + ++LS
Sbjct: 79 GKVFALDLLPVEPMAGVDFIQGDFQDDAVLEELEARLAGQPVD-------------IVLS 125
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLA 147
DM P++SGI T D A S+ LG A+D +
Sbjct: 126 DMAPNMSGIDTADQARSIYLGELALDFS 153
>gi|291228520|ref|XP_002734226.1| PREDICTED: Putative rRNA methyltransferase 3-like [Saccoglossus
kowalevskii]
Length = 261
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 28/186 (15%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D FY+ A+ GY ARSAFKLLQ+ ++++ ++ ++DL APG WLQVA +
Sbjct: 7 TGKGRKDKFYKLAKETGYRARSAFKLLQLNRKFQFLQKSRVLIDLCAAPGGWLQVASNHM 66
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P+ +VG+D+ ++ +P+ TV AD+ + K ++L+D
Sbjct: 67 -PV--SSLIVGVDLVPIRPIPN------TITVQADITTEKCRSLLRNELKDWKADIVLND 117
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
P+V DA L ++A+ LA S L GG V K+
Sbjct: 118 GAPNVGKNWLHDAFTQASLTLKALKLA------------------SDFLTQGGWFVTKVF 159
Query: 181 ESQDAQ 186
S+D Q
Sbjct: 160 RSKDYQ 165
>gi|49473815|ref|YP_031857.1| cell division protein ftsJ [Bartonella quintana str. Toulouse]
gi|81647276|sp|Q6G0S9.1|RLME_BARQU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|49239318|emb|CAF25648.1| Cell division protein ftsJ [Bartonella quintana str. Toulouse]
Length = 241
Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 42/183 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL+++ ++YK +K G ++DLG APG W QVA + +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEMNERYKFLKKGQKIIDLGAAPGGWCQVAQRIVGSSDEK 104
Query: 68 GSVVGID---------VKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
SVVGID V +++ LH DA P + AL K V+L
Sbjct: 105 PSVVGIDYLPVVPLPGVIMLEMDFLHTDA------------PQKLIDALGTKP---DVVL 149
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM +G D + L A D AL VLK GGH ++K
Sbjct: 150 SDMAAPTTGHRQTDYLRTTYLCEVAADFAL------------------SVLKSGGHFLVK 191
Query: 179 LLE 181
+
Sbjct: 192 AFQ 194
>gi|345875872|ref|ZP_08827659.1| ribosomal RNA large subunit methyltransferase J [Neisseria weaveri
LMG 5135]
gi|343968169|gb|EGV36401.1| ribosomal RNA large subunit methyltransferase J [Neisseria weaveri
LMG 5135]
Length = 206
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSWSQVAAKLVGK---N 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R + V +L N++ +++ DM P
Sbjct: 75 GQVFALDILPMDDIEGVSFIQGDFREEQVLNQFESLLDNRL---------LDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG+ ++K+ +
Sbjct: 126 NMSGNAVTDQARSFYLCELALDFA------------------SEHLKTGGNFLVKVFQ 165
>gi|344344107|ref|ZP_08774972.1| Ribosomal RNA large subunit methyltransferase E [Marichromatium
purpuratum 984]
gi|343804391|gb|EGV22292.1| Ribosomal RNA large subunit methyltransferase E [Marichromatium
purpuratum 984]
Length = 206
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+A+KLL++Q++ +L+ PG V+DLG APG+W QVA + +G
Sbjct: 17 DPFVKQAQQDGYRSRAAYKLLELQERDRLLAPGMRVVDLGAAPGSWSQVAARLVG---KQ 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV +D+ + V L D R Q + Q+ A + + V+LSDM P
Sbjct: 74 GRVVALDLLPIDPLPGVEILQGDFREQAM--------LEQLEA-ALEAAPLDVVLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+++G D A + L A++LA LKPGG L +K+ +
Sbjct: 125 NITGTAVVDQARVMYLVELALELA------------------QARLKPGGALAVKVFQ 164
>gi|421567246|ref|ZP_16012982.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM3001]
gi|402344257|gb|EJU79398.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM3001]
Length = 206
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQYLKTGGSFLVKVFQ 165
>gi|126179410|ref|YP_001047375.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoculleus
marisnigri JR1]
gi|158513234|sp|A3CVJ3.1|RLME_METMJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|125862204|gb|ABN57393.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanoculleus marisnigri
JR1]
Length = 203
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 92/176 (52%), Gaps = 29/176 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D YR+A + GY AR+A+KLL+IQ++ +I+P +V+DLG APG+WLQV L L +
Sbjct: 8 DSVYRKAMKAGYRARAAYKLLEIQQRNGIIRPDDNVVDLGAAPGSWLQV----LRDLTD- 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+ + P V T+ D + P Q R SV++SD P +SG
Sbjct: 63 GRVIGVDLNPI-APM----EGVTTIVGDFTD-PLVQERIREEAGGVVSVVVSDASPKLSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D A ++ LG A+ A VLKPGG++VIK + +
Sbjct: 117 QKSYDQARAIGLGEDALAFA------------------CTVLKPGGNMVIKSFQGE 154
>gi|398848248|ref|ZP_10605073.1| 23S rRNA methylase [Pseudomonas sp. GM84]
gi|398249064|gb|EJN34457.1| 23S rRNA methylase [Pseudomonas sp. GM84]
Length = 208
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 18 DPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 74
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G ++ D+ ++ +P V + D + Q + +++SDM P++S
Sbjct: 75 GRLIASDILEMDSIPD------VTFIQGDFTDDAVLQQILEAVGDSHVDLVISDMAPNMS 128
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G D ++ L A+DLA + VLKPGG +IK+ + +
Sbjct: 129 GTPEVDMPRAMFLCELALDLA------------------TRVLKPGGDFLIKIFQGE 167
>gi|70734330|ref|YP_257970.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
protegens Pf-5]
gi|83305665|sp|Q4KIG3.1|RLME_PSEF5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|68348629|gb|AAY96235.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
protegens Pf-5]
Length = 209
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V A ++ N +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGN---------SEVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 125 NMSGLAAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKIFQGE 166
>gi|74317150|ref|YP_314890.1| cell division protein FtsJ [Thiobacillus denitrificans ATCC 25259]
gi|123612003|sp|Q3SJR5.1|RLME_THIDA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|74056645|gb|AAZ97085.1| cell division protein FtsJ [Thiobacillus denitrificans ATCC 25259]
Length = 220
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G+ +R+A+KLL+I + L+ PG +V+DLG APG+W QVA Q +
Sbjct: 21 DAYVKKAQQDGFRSRAAYKLLEIDSRDHLLHPGMTVVDLGAAPGSWCQVAVQK---MKRQ 77
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ ID+ V V +L D + D + N ++A ++LSDM P
Sbjct: 78 GRVLAIDLLPVAPLPGVEALQGD----FTAPDTLAWLENTLQAAR-----VDLVLSDMAP 128
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG+ +D A EL A+D A+ LKP G ++K+ +
Sbjct: 129 NMSGVMLRDQARHYELCELALDFAV------------------NWLKPDGAFLVKVFQ 168
>gi|406998713|gb|EKE16608.1| hypothetical protein ACD_10C00894G0002 [uncultured bacterium]
Length = 208
Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 35/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ + +R+A+KL +I ++YKLI+PGS +LDLG APG+W Q A + +
Sbjct: 12 DPYLKKSRAEDFRSRAAYKLEEIDEKYKLIRPGSKILDLGAAPGSWSQYAMRKVA---GK 68
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
++ ID+ ++ V L D R +I L + ++ VILSDM P
Sbjct: 69 AKIIAIDLLEIYPIEGVTILQGDIRDIKNQEQIIKLAAGKL----------DVILSDMAP 118
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+G+ D S L A+D+A +LKPGG V K+ E
Sbjct: 119 DTTGVHYADTENSALLVHLALDIA------------------EKLLKPGGSFVAKVFEGA 160
Query: 184 DAQ 186
+ Q
Sbjct: 161 EYQ 163
>gi|386876066|ref|ZP_10118205.1| ribosomal RNA large subunit methyltransferase J [Candidatus
Nitrosopumilus salaria BD31]
gi|386806127|gb|EIJ65607.1| ribosomal RNA large subunit methyltransferase J [Candidatus
Nitrosopumilus salaria BD31]
Length = 197
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 11/134 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A G+ +R+AFKL ++ + Y+LI PG VLDLGCAPG W Q+A + +G N
Sbjct: 9 DHYRKLAHEQGFRSRAAFKLKELNQSYRLIGPGFYVLDLGCAPGGWTQMAVKLVG---NQ 65
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+G+D+ V ++P H R V++ +S ++ + ++ D+ P VS
Sbjct: 66 GKVMGVDLSYVEEIPGAHI-IRENIEDEHVVD------EIMSYFERKVNAVICDLSPQVS 118
Query: 127 GITTKDAALSVELG 140
G T D A + L
Sbjct: 119 GNWTVDHAKQISLN 132
>gi|333988064|ref|YP_004520671.1| ribosomal RNA large subunit methyltransferase E [Methanobacterium
sp. SWAN-1]
gi|333826208|gb|AEG18870.1| Ribosomal RNA large subunit methyltransferase E [Methanobacterium
sp. SWAN-1]
Length = 214
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 11/132 (8%)
Query: 10 FYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS 69
+Y+ A++ Y +R+++KL QI K++KLI+P S VLDLG APG W QVA + +G G
Sbjct: 14 YYKMAKKNNYRSRASYKLKQINKRFKLIEPESYVLDLGAAPGGWSQVALEIMGE---EGI 70
Query: 70 VVGIDVKKVKVPSLHCDARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCPSVSG 127
VVG+D++ ++ D + + D N + +AL K +V+LSD P +SG
Sbjct: 71 VVGVDLQWIR--PFEEDNFI-GIKGDFTNEDVQKKIKKALEGKA---NVVLSDASPKLSG 124
Query: 128 ITTKDAALSVEL 139
I D S EL
Sbjct: 125 IKDMDNLRSAEL 136
>gi|254516625|ref|ZP_05128684.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium NOR5-3]
gi|219675048|gb|EED31415.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium NOR5-3]
Length = 212
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQR GY +R+ +KLL++Q++ +LI+PG ++LDLG APG W QVA +G +
Sbjct: 18 DPYVQQAQRDGYRSRACYKLLELQERERLIRPGMTILDLGSAPGGWSQVAAALVG---DH 74
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D+ +P + A V V D + + K +++SDM P++SG
Sbjct: 75 GQVIASDI----LP-MDSIAGVDFVEGDFTENAVFERILTTLNGKPADLVISDMAPNMSG 129
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++ D S+ L A+D+A VL PGG V K+ + +
Sbjct: 130 VSAVDQPKSIYLVELALDMA------------------CRVLAPGGVFVTKVFQGE 167
>gi|421600322|ref|ZP_16043354.1| 23S rRNA methyltransferase J [Bradyrhizobium sp. CCGE-LA001]
gi|404267569|gb|EJZ32217.1| 23S rRNA methyltransferase J [Bradyrhizobium sp. CCGE-LA001]
Length = 230
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+ GY +R+AFKLL+I +++L+KPG +V+DLG APG W Q+A + +G +
Sbjct: 33 DPYVAKAKAAGYRSRAAFKLLEIDDKFRLLKPGMAVVDLGAAPGGWSQIAAKRVGSTEGK 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV ID+ ++ ++P + A++ + D P L K V++SDM + +
Sbjct: 93 GKVVAIDLLEMPEIPGVDF-AQLDFMDNDA---PEKLTAMLGGKA---DVVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L AA A VL+PGG + K +S
Sbjct: 146 GHRKTDQ-------LRIVGLVETAAAFACD-----------VLEPGGSFLAKTFQS 183
>gi|440722199|ref|ZP_20902582.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP34876]
gi|440725911|ref|ZP_20906171.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP34881]
gi|443642355|ref|ZP_21126205.1| 23S rRNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae B64]
gi|440361728|gb|ELP98945.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP34876]
gi|440367798|gb|ELQ04853.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP34881]
gi|443282372|gb|ELS41377.1| 23S rRNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae B64]
Length = 216
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D T+ ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDTILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|54295625|ref|YP_128040.1| ribosomal RNA large subunit methyltransferase (cell division
protein FtsJ) [Legionella pneumophila str. Lens]
gi|81367654|sp|Q5WT13.1|RLME_LEGPL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|53755457|emb|CAH16953.1| Ribosomal RNA large subunit methyltransferase (Cell division
protein FtsJ) [Legionella pneumophila str. Lens]
gi|307611667|emb|CBX01358.1| ribosomal RNA large subunit methyltransferase [Legionella
pneumophila 130b]
Length = 206
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL +I + LIKPG +V+DLG +PG W Q A + +
Sbjct: 17 DVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGASPGGWTQYASEK---MKGS 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V +D+ + V + D R V ++INL Q+ ++LSDM P
Sbjct: 74 GRLVALDILPMDALPNVEFILGDFREDNVLQELINLIP---------QRTLDLLLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG +A+ + M V+LA A +LKPGG++++K+
Sbjct: 125 NMSG----SSAIDIPRAMYLVELAFDFA--------------EKMLKPGGNMLVKIFH 164
>gi|319638318|ref|ZP_07993081.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
C102]
gi|317400591|gb|EFV81249.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
C102]
Length = 206
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---KT 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ + V + D R V L N + +++ DM P
Sbjct: 75 GAVFALDILPMDAIDGVSFIQGDFREDAVLEQFEALLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LKPGG ++K+ +
Sbjct: 126 NMSGNAVTDQARSFYLCELALDFA------------------SQHLKPGGSFLVKVFQ 165
>gi|374292556|ref|YP_005039591.1| Ribosomal RNA large subunit (23S) methyltransferase [Azospirillum
lipoferum 4B]
gi|357424495|emb|CBS87374.1| Ribosomal RNA large subunit (23S) methyltransferase [Azospirillum
lipoferum 4B]
Length = 238
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 81/176 (46%), Gaps = 28/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EA + GY +R+AFKLLQ+ ++++L+ PG V+DLG APG W Q+A + + +G
Sbjct: 39 DPYVAEATKRGYRSRAAFKLLQLDEKFRLLAPGKRVVDLGAAPGGWTQIAVEKVQTAKDG 98
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSV 125
VVG+D+ + VP T+ AD L AL G ++LSDM
Sbjct: 99 WKVVGLDILPMDPVPG------ATTMQADF--LEEGAAEALKEALGGPADLVLSDMAAPT 150
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D + L A D A VL PGG V KL +
Sbjct: 151 TGHQQTDHLRIMGLAEAAYDFA------------------EEVLAPGGAFVAKLFQ 188
>gi|333909215|ref|YP_004482801.1| ribosomal RNA large subunit methyltransferase E [Marinomonas
posidonica IVIA-Po-181]
gi|333479221|gb|AEF55882.1| Ribosomal RNA large subunit methyltransferase E [Marinomonas
posidonica IVIA-Po-181]
Length = 206
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 97/180 (53%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++Q+ GY +R+++KL++I + KLI+PG SV+DLG APG W Q+A + +G +
Sbjct: 17 DPYVKKSQQDGYRSRASYKLIEINDKDKLIRPGMSVVDLGAAPGGWSQIAAKLIG---DK 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G++V D+ ++ V + D Q V ++ +Q L ++SDM P
Sbjct: 74 GTIVASDILEMAPLPGVRFVQGDFTEQEVYEAILAEIGDQKADL---------VISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG ++ D ++ L V+LAL AA VL+PGG+ ++K+ + +
Sbjct: 125 NMSGNSSSDQPQAMYL----VELALDMAA--------------HVLRPGGNFLVKVFQGE 166
>gi|431804517|ref|YP_007231420.1| 23S rRNA methyltransferase J [Pseudomonas putida HB3267]
gi|430795282|gb|AGA75477.1| 23S rRNA methyltransferase J [Pseudomonas putida HB3267]
Length = 208
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 18 DPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 74
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G ++ D+ ++ +P V + D Q + +++SDM P++S
Sbjct: 75 GRLIASDILEMDSIPD------VTFIQGDFTQDEVLQRILEAVGDSHVDLVISDMAPNMS 128
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G D ++ L A+DLA + VLKPGG +IK+ + +
Sbjct: 129 GTPAVDMPRAMFLCELALDLA------------------TRVLKPGGDFLIKIFQGE 167
>gi|313668721|ref|YP_004049005.1| cell division protein [Neisseria lactamica 020-06]
gi|421863048|ref|ZP_16294749.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379377|emb|CBX21944.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006183|emb|CBN87645.1| putative cell division protein [Neisseria lactamica 020-06]
Length = 206
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L +N + +++ DM P
Sbjct: 75 GAVFALDILPMEAVNGVSFIQGDFRENDVLAQFEGLLNN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|383936855|ref|ZP_09990274.1| ribosomal RNA large subunit methyltransferase E [Rheinheimera
nanhaiensis E407-8]
gi|383702092|dbj|GAB60365.1| ribosomal RNA large subunit methyltransferase E [Rheinheimera
nanhaiensis E407-8]
Length = 209
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+LG +R+AFKL +I ++ KLI+ G +V+DLG APG+W Q +G + +G
Sbjct: 20 DHFVQKAQKLGLRSRAAFKLEEINQKDKLIRSGMTVVDLGSAPGSWSQFC---VGQVGSG 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V+ D+ + V L D R + V +++ Q V+LSDM P
Sbjct: 77 GTVIACDILPMDPINGVSFLQGDFREEAVLEALLSRIGGQ---------NVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG T D A S+ L A+D+ VLK G V+K+ + +
Sbjct: 128 NMSGNDTTDQARSMYLVELALDMC------------------HKVLKQNGSFVVKVFQGE 169
>gi|395789206|ref|ZP_10468729.1| ribosomal RNA large subunit methyltransferase E [Bartonella
taylorii 8TBB]
gi|395430253|gb|EJF96297.1| ribosomal RNA large subunit methyltransferase E [Bartonella
taylorii 8TBB]
Length = 240
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 83/183 (45%), Gaps = 42/183 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +RSA+KL++I ++YK +K G V+DLG APG W QV + +G +
Sbjct: 45 DPYVHQSKIDGYRSRSAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQVVGRLVGSSNEK 104
Query: 68 GSVVGID---------VKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
SVVGID + +++ LH DA P + AL K V+L
Sbjct: 105 PSVVGIDYLPIDPLPGIVMLEMDFLHADA------------PQKLIDALGTKP---DVVL 149
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM +G D +V L A D AL VLKP GH + K
Sbjct: 150 SDMAAPTTGHRQTDHLRTVHLCEVAADFAL------------------SVLKPRGHFLAK 191
Query: 179 LLE 181
+
Sbjct: 192 AFQ 194
>gi|94986714|ref|YP_594647.1| 23S rRNA methylase [Lawsonia intracellularis PHE/MN1-00]
gi|442555539|ref|YP_007365364.1| ribosomal RNA large subunit methyltransferase J [Lawsonia
intracellularis N343]
gi|143460425|sp|Q1MRQ0.1|RLME_LAWIP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|94730963|emb|CAJ54326.1| 23S rRNA methylase [Lawsonia intracellularis PHE/MN1-00]
gi|441492986|gb|AGC49680.1| ribosomal RNA large subunit methyltransferase J [Lawsonia
intracellularis N343]
Length = 200
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D+++ +A+ Y ARS +KL +I ++ L + G SVLDLG +PG+W A + +G
Sbjct: 6 DYYFLKAKHEKYPARSIYKLKEIDNRFCLFQKGMSVLDLGASPGSWSLGAAEKVG---KT 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV D++ + +P + V D+ + S+ + K+ F VI+SDM P +G
Sbjct: 63 GRVVSCDIQTITIP---LPSNVSFFQEDIFH-RSDSFNNILIKEGPFHVIMSDMAPQTTG 118
Query: 128 ITTKDAALSVELGMRAVDLA 147
+ D + S+EL + A+ +A
Sbjct: 119 VKITDHSRSLELCLEALAIA 138
>gi|397665389|ref|YP_006506927.1| 23S rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila]
gi|395128800|emb|CCD07020.1| 23S rRNA methyltransferase [Legionella pneumophila subsp.
pneumophila]
Length = 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL +I + LIKPG +V+DLG APG W Q A + +
Sbjct: 17 DVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQYASEK---MRGS 73
Query: 68 GSVVGIDVKKVK-VPSLHC---DARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V +D+ + +P+ D R V ++INL Q+ ++LSDM P
Sbjct: 74 GRLVALDILPMDALPNAEFILGDFREDNVLQELINLIP---------QRTLDLLLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG +A+ + M V+LA A +LKPGG++++K+
Sbjct: 125 NMSG----SSAIDIPRAMYLVELAFDFA--------------EKMLKPGGNMLVKIFH 164
>gi|242014003|ref|XP_002427688.1| cell division protein ftsj, putative [Pediculus humanus corporis]
gi|212512118|gb|EEB14950.1| cell division protein ftsj, putative [Pediculus humanus corporis]
Length = 228
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 29/185 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQV---ACQSLGPL 64
D + +A++ Y RSAFKLL+I +Y L+KPG VLD+G +PG+W QV S G +
Sbjct: 28 DIYVEKAKKENYRCRSAFKLLEINDKYNLVKPGDVVLDVGASPGSWSQVLASKTNSNGKI 87
Query: 65 DNG--GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
D G+V+ ID+ P + + D N S + ++ ++ +K F I SDM
Sbjct: 88 DKSPKGTVIAIDIS----PIFPIEGVTILSNLDFTNESSQEKIKGITNGEK-FDFIFSDM 142
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P +G+ + D ++L + L VNN LK GG +++K+ +
Sbjct: 143 APKSTGVKSLDQENIIKLLY---------SVLFFSVNN---------LKGGGGILLKIWD 184
Query: 182 SQDAQ 186
Q +
Sbjct: 185 GQHER 189
>gi|51246761|ref|YP_066645.1| ribosomal RNA methyltransferase (FtsJ) [Desulfotalea psychrophila
LSv54]
gi|81641141|sp|Q6AJ42.1|RLME_DESPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|50877798|emb|CAG37638.1| related to ribosomal RNA methyltransferase (FtsJ) [Desulfotalea
psychrophila LSv54]
Length = 201
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 9/142 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ ++A++ Y ARS +KL + QK+Y +I G S+LDLGC PG+W A + GP
Sbjct: 6 DYYAKKAKKDNYPARSIYKLEEAQKKYDIISRGDSILDLGCFPGSWSIYASELAGP---K 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILSDMCPSV 125
G VVG+D+++ A + + D I P+ VR + P F V++SDM P
Sbjct: 63 GIVVGVDLQQAVGGGRADAAPIHWICED-IREPAMLEAVRRIRP---SFRVLISDMAPKT 118
Query: 126 SGITTKDAALSVELGMRAVDLA 147
+G DA S+ L + +++A
Sbjct: 119 TGNRWTDAQQSLNLCYQTLEIA 140
>gi|333984953|ref|YP_004514163.1| ribosomal RNA large subunit methyltransferase E [Methylomonas
methanica MC09]
gi|333808994|gb|AEG01664.1| Ribosomal RNA large subunit methyltransferase E [Methylomonas
methanica MC09]
Length = 205
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 16/144 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ LGY +R+ FKL++IQ++ KLI+PG +++DLG APG W + A + LG D
Sbjct: 17 DEYVKKAQALGYRSRAVFKLIEIQEKDKLIRPGMNIVDLGAAPGGWSEYARKLLGKND-- 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
V+ +D+ ++ V + D R V + + Q L +LSDM P
Sbjct: 75 -KVIALDLLDIEPIAGVDFIQGDFREDEVLEKLYKVLDGQPVHL---------LLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLA 147
++SG D S+ LG A+D A
Sbjct: 125 NISGNKEMDQPRSIYLGELALDAA 148
>gi|114705167|ref|ZP_01438075.1| cell division protein ftsJ [Fulvimarina pelagi HTCC2506]
gi|114539952|gb|EAU43072.1| cell division protein ftsJ [Fulvimarina pelagi HTCC2506]
Length = 244
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R+A+ GY +R+A+KL+++ +YKL+KPG V+DLG APG W QV+ + +G ++
Sbjct: 34 DPYVRQAKADGYRSRAAYKLIEMDDRYKLLKPGQRVVDLGAAPGGWCQVSVERVGSENDD 93
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVIN--LPSNQVRAL--SPKQKGFSVILSDMCP 123
VVGID +V S + + D ++ P + AL SP ++LSDM
Sbjct: 94 IRVVGIDFLEVDPVS-----GAEILLMDFLDDEAPDRLMEALGGSP-----DIVLSDMAA 143
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D ++ L A D A+ LKPGGH + K +
Sbjct: 144 PTIGHRQTDHLRTMHLCEVAADFAV------------------RTLKPGGHFLCKTFQ 183
>gi|421537753|ref|ZP_15983936.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 93003]
gi|402318420|gb|EJU53943.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 93003]
Length = 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + G +
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---SS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L +N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFEGLLNN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|261400135|ref|ZP_05986260.1| ribosomal RNA large subunit methyltransferase J [Neisseria
lactamica ATCC 23970]
gi|269210130|gb|EEZ76585.1| ribosomal RNA large subunit methyltransferase J [Neisseria
lactamica ATCC 23970]
Length = 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L +N + +++ DM P
Sbjct: 75 GAVFALDILPMEPIGGVSFIQGDFRENDVLAQFEGLLNN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|121634592|ref|YP_974837.1| cell division protein [Neisseria meningitidis FAM18]
gi|433494379|ref|ZP_20451449.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM762]
gi|158513144|sp|A1KT57.1|RLME_NEIMF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120866298|emb|CAM10039.1| putative cell division protein [Neisseria meningitidis FAM18]
gi|432231053|gb|ELK86723.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM762]
Length = 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L +N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFEGLLNN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|416178625|ref|ZP_11610653.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M6190]
gi|416192632|ref|ZP_11616738.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis ES14902]
gi|433492302|ref|ZP_20449396.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM586]
gi|433496563|ref|ZP_20453604.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M7089]
gi|433498623|ref|ZP_20455632.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M7124]
gi|433500591|ref|ZP_20457577.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM174]
gi|433502832|ref|ZP_20459797.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM126]
gi|325131968|gb|EGC54667.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M6190]
gi|325137799|gb|EGC60374.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis ES14902]
gi|432229091|gb|ELK84784.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM586]
gi|432234457|gb|ELK90077.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M7124]
gi|432235263|gb|ELK90879.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M7089]
gi|432235882|gb|ELK91491.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM174]
gi|432240928|gb|ELK96459.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM126]
Length = 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L +N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFEGLLNN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|104780020|ref|YP_606518.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
entomophila L48]
gi|143461104|sp|Q1IF51.1|RLME_PSEE4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|95109007|emb|CAK13703.1| 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent
[Pseudomonas entomophila L48]
Length = 208
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 18 DPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 74
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G ++ D+ ++ +P V + D Q + +++SDM P++S
Sbjct: 75 GRLIASDILEMDSIPD------VTFIQGDFTQDEVLQQILQAVGDSHVDLVISDMAPNMS 128
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G D ++ L A+DLA + VLKPGG +IK+ + +
Sbjct: 129 GTPAVDMPRAMFLCELALDLA------------------TRVLKPGGDFLIKIFQGE 167
>gi|407977160|ref|ZP_11158049.1| 23S rRNA methyltransferase J [Nitratireductor indicus C115]
gi|407427393|gb|EKF40088.1| 23S rRNA methyltransferase J [Nitratireductor indicus C115]
Length = 247
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 26/175 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ G +R+A+KL +I +YKL+KPG+ V+DLG APG W QVA + +G +
Sbjct: 38 DPYVHRAQAEGMRSRAAYKLTEIDDRYKLLKPGARVIDLGAAPGGWCQVAVERVGSTEEA 97
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQV-RALSPKQKGFSVILSDMCPSVS 126
VVGID L D V ++ L + R + V+LSDM +
Sbjct: 98 PLVVGIDY-------LGMDPVPGAVVLEMDFLDDDAPDRLMETLGDAPDVVLSDMAAPTT 150
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D ++ L A D A+ VLKPGGH + K +
Sbjct: 151 GHRRTDHIRTMHLCETAADFAM------------------SVLKPGGHFLAKTFQ 187
>gi|88705677|ref|ZP_01103387.1| Ribosomal RNA large subunit methyltransferase J [Congregibacter
litoralis KT71]
gi|88700190|gb|EAQ97299.1| Ribosomal RNA large subunit methyltransferase J [Congregibacter
litoralis KT71]
Length = 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQR GY +R+ +KLL++Q++ +I+PG +VLDLG APG W QVA + +G
Sbjct: 18 DPYVQQAQRDGYRSRACYKLLELQERDNIIRPGMTVLDLGSAPGGWSQVAAELVG---KR 74
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D+ +P D V V D + K +++SDM P++SG
Sbjct: 75 GQVIASDI----LPMDPIDG-VNFVQGDFTEDQVFEQILAEMGDKSADLVISDMAPNMSG 129
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++ D S+ L A+D+A + VL PGG + K+ + +
Sbjct: 130 VSAVDQPKSIYLVELALDMA------------------TRVLVPGGAFITKVFQGE 167
>gi|254372405|ref|ZP_04987895.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. novicida GA99-3549]
gi|151570133|gb|EDN35787.1| ribosomal large subunit methyltransferase J [Francisella novicida
GA99-3549]
Length = 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y+L KP V+DLG APG W + + +G
Sbjct: 17 DYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVIDLGAAPGGWSEQVIKYIGK---N 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
G ++ +D+ ++ P A V+ + D + + Q + L QK ++SDM P++S
Sbjct: 74 GKLIALDLLEM-API----AGVEFIQGDFSSDETYQKLNTLVNNQK-IDCVISDMAPNLS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G T D A S+ L A+D A
Sbjct: 128 GNKTSDQAKSIYLLELALDFA 148
>gi|62263595|gb|AAX78175.1| unknown protein [synthetic construct]
Length = 241
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y+L KP V+DLG APG W + + +G
Sbjct: 43 DYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQVIKYIGK---N 99
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
G ++ +D+ ++ P A V+ + D + + Q + L QK ++SDM P++S
Sbjct: 100 GKLIALDLLEM-API----AGVEFIQGDFSSDETYQKLNTLVNNQK-IDCVISDMAPNLS 153
Query: 127 GITTKDAALSVELGMRAVDLA 147
G T D A S+ L A+D A
Sbjct: 154 GNKTSDQAKSIYLLELALDFA 174
>gi|423710960|ref|ZP_17685280.1| ribosomal RNA large subunit methyltransferase E [Bartonella
washoensis Sb944nv]
gi|395414874|gb|EJF81309.1| ribosomal RNA large subunit methyltransferase E [Bartonella
washoensis Sb944nv]
Length = 242
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++Y+ +K G ++DLG APG W QVA + +G D
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYQFLKKGQKIIDLGAAPGGWCQVAGRIVGSSDEK 104
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
SVVGID LH D V + D ++ P + AL K V+LSDM
Sbjct: 105 PSVVGIDY-------LHVDPLPGVVMLEMDFLHADAPQKLIDALGTKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VL+P GH + K +
Sbjct: 155 PTTGHRQTDHLRTIYLCEVAADFAL------------------SVLRPRGHFLAKAFQ 194
>gi|421557023|ref|ZP_16002932.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 80179]
gi|402335708|gb|EJU70972.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 80179]
Length = 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|386393781|ref|ZP_10078562.1| 23S rRNA methylase [Desulfovibrio sp. U5L]
gi|385734659|gb|EIG54857.1| 23S rRNA methylase [Desulfovibrio sp. U5L]
Length = 201
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 25/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A+ Y ARS +KL +I+KQ +L+ PG+ VLDLG PG+W + +GP
Sbjct: 6 DHYFNKAKLENYPARSVYKLQEIEKQSRLLVPGAKVLDLGACPGSWTLFTAKRIGP---Q 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ ID+ V + D++ + + A + F V++SDM P +G
Sbjct: 63 GRVLAIDLNPA---GTEFPDNVTYLLGDMLEPGPDILEAFAAFSP-FDVVISDMAPQTTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
I D S+EL A+ +A L+PGG V+K+ + DA
Sbjct: 119 IKFTDQCRSLELCEAALSVA------------------RERLRPGGGFVVKIFQGPDA 158
>gi|118497045|ref|YP_898095.1| ribosomal large subunit methyltransferase J [Francisella novicida
U112]
gi|194324280|ref|ZP_03058054.1| ribosomal RNA large subunit methyltransferase J [Francisella
novicida FTE]
gi|385792363|ref|YP_005825339.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|143460128|sp|A0Q526.1|RLME_FRATN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|118422951|gb|ABK89341.1| 23S rRNA methylase [Francisella novicida U112]
gi|194321727|gb|EDX19211.1| ribosomal RNA large subunit methyltransferase J [Francisella
tularensis subsp. novicida FTE]
gi|328676509|gb|AEB27379.1| Cell division protein ftsJ / Ribosomal RNA large subunit
methyltransferase J [Francisella cf. novicida Fx1]
Length = 206
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y+L KP V+DLG APG W + + +G
Sbjct: 17 DYYVIQANKLGYRSRASFKILEIQNKYQLFKPNMFVVDLGAAPGGWSEQVIKYIGK---N 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
G ++ +D+ ++ P A V+ + D + + Q + L QK ++SDM P++S
Sbjct: 74 GKLIALDLLEM-API----AGVEFIQGDFSSDETYQKLNTLVNNQK-IDCVISDMAPNLS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G T D A S+ L A+D A
Sbjct: 128 GNKTSDQAKSIYLLELALDFA 148
>gi|407938541|ref|YP_006854182.1| 23S rRNA methyltransferase J [Acidovorax sp. KKS102]
gi|407896335|gb|AFU45544.1| 23S rRNA methyltransferase J [Acidovorax sp. KKS102]
Length = 218
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I +Q LIKPG +V+DLG PGAW Q + L P
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGYTVVDLGSTPGAWSQYLRRRLSPSGAA 80
Query: 68 -----GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
G+++ +D+ ++ V L+ D R V + +V V++
Sbjct: 81 AGQLNGAIIALDILPMEPIEGVTYLNGDFREPEVLERLEQALDGRV---------VDVVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SGI + DAA L AVD A LKP G LV+K
Sbjct: 132 SDMAPNLSGIESADAARIAHLVELAVDFACNH------------------LKPEGALVVK 173
Query: 179 LLE 181
L
Sbjct: 174 LFH 176
>gi|221066109|ref|ZP_03542214.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
KF-1]
gi|264679344|ref|YP_003279251.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
CNB-2]
gi|299532303|ref|ZP_07045696.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
S44]
gi|220711132|gb|EED66500.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
KF-1]
gi|262209857|gb|ACY33955.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
CNB-2]
gi|298719711|gb|EFI60675.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
S44]
Length = 220
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 89/183 (48%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL--- 64
D + + AQ+ GY AR+A+KL +I + KLI+PG +V+DLGCAPGAW Q + L P
Sbjct: 21 DPYVKAAQKDGYRARAAYKLKEIDESLKLIQPGHTVVDLGCAPGAWSQYVRRRLSPSGAA 80
Query: 65 --DNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
+ G ++ +D+ ++ V + D R + V A Q+ K V++
Sbjct: 81 VGELNGRIISLDLLPMEPIEGVHYIQGDFREEAVLA--------QLEEAMGGGKA-DVVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SG D A L AVD A +NN +KP G LV+K
Sbjct: 132 SDMAPNLSGHGATDGARVAVLIEMAVDFA---------INN---------MKPEGALVVK 173
Query: 179 LLE 181
L
Sbjct: 174 LFH 176
>gi|406979651|gb|EKE01397.1| ribosomal RNA large subunit methyltransferase J [uncultured
bacterium]
Length = 209
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 90/176 (51%), Gaps = 30/176 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A++ G+ ARS +KL +IQ++YK+IKP V+DLG APG W + A Q + P
Sbjct: 17 DIYVKKAKQEGFRARSVYKLSEIQERYKIIKPNMFVVDLGAAPGGWSEYAVQLVAP---K 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG--FSVILSDMCPSV 125
G + +D+ +P + V + D + V+ L + G V+LSDM P++
Sbjct: 74 GKIFALDI----LP-MQPIKGVDFIQGDFTQ--DDVVKDLHARLNGEKIDVVLSDMAPNL 126
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
SG++ D + S+ L V++AL A LKPGG + K+ +
Sbjct: 127 SGLSVVDQSRSINL----VEIALAFAQKG--------------LKPGGVFLTKIFQ 164
>gi|418532364|ref|ZP_13098272.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
ATCC 11996]
gi|371450595|gb|EHN63639.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Comamonas testosteroni
ATCC 11996]
Length = 220
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 89/183 (48%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL--- 64
D + + AQ+ GY AR+A+KL +I + KLI+PG +V+DLGCAPGAW Q + L P
Sbjct: 21 DPYVKAAQKDGYRARAAYKLKEIDESLKLIQPGHTVVDLGCAPGAWSQYVRRRLSPSGAA 80
Query: 65 --DNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
+ G ++ +D+ ++ V + D R + V A Q+ K V++
Sbjct: 81 VGELNGRIISLDLLPMEPIEGVHYIQGDFREEAVLA--------QLEEAMGGGKA-DVVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SG D A L AVD A +NN +KP G LV+K
Sbjct: 132 SDMAPNLSGHGATDGARVAVLIEMAVDFA---------INN---------MKPEGALVVK 173
Query: 179 LLE 181
L
Sbjct: 174 LFH 176
>gi|381160479|ref|ZP_09869711.1| 23S rRNA methylase [Thiorhodovibrio sp. 970]
gi|380878543|gb|EIC20635.1| 23S rRNA methylase [Thiorhodovibrio sp. 970]
Length = 215
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 90/178 (50%), Gaps = 30/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+A+K L+I + +L++PG VLDLG APG W QV +G +
Sbjct: 18 DPYVKQAQSEGYRSRAAYKFLEIDAKDRLLRPGMRVLDLGAAPGGWSQVLAAGVG---SR 74
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSV 125
G V+ +D+ + VP V + D + P ++ A + + ++LSDM P++
Sbjct: 75 GQVIALDLLPMDPVPG------VVFIQGDFTEDEPLERIHA-ALNGEFVDLVLSDMAPNI 127
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
SG+ D SV L A+DLA + VL+ GGHLVIK +
Sbjct: 128 SGMRAVDQPRSVHLCELALDLA------------------TRVLQSGGHLVIKAFHGE 167
>gi|344228963|gb|EGV60849.1| hypothetical protein CANTEDRAFT_109917 [Candida tenuis ATCC 10573]
Length = 299
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 27/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN- 66
D +YR A+ G+ ARSAFKLLQ+ +Q++L K S V+DL APG+W QV + L +
Sbjct: 10 DLYYRRAKEEGWRARSAFKLLQLNEQFELFKGISKVVDLCAAPGSWSQVLSRELYEVQKN 69
Query: 67 -GGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-VILSDMCPS 124
G +V +D++ P + V T+ AD+ + P R L + + SD P
Sbjct: 70 PNGQIVAVDLQ----PMTPING-VTTLQADITH-PKTLQRILDEFHGELADFVCSDGAPD 123
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
V+G+ D + +L + A+ L + +LKPGG V K+ +D
Sbjct: 124 VTGLHDLDEYIQAQLILSALQLT------------------TCILKPGGTFVAKIFRGRD 165
>gi|291278455|ref|YP_003495290.1| cell division protein methyltransferase FtsJ [Deferribacter
desulfuricans SSM1]
gi|290753157|dbj|BAI79534.1| cell division protein methyltransferase FtsJ [Deferribacter
desulfuricans SSM1]
Length = 195
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 26/179 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y++A+ G+ +R+A+KL +I +Y++IK G VLD GCAPG W Q A +G +
Sbjct: 6 DGYYKKAKHEGFRSRAAYKLSEINNKYRIIKKGDKVLDAGCAPGGWSQAAISIVG---DK 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVGID+ + + + + ++++ + + A K+ + ++SD P+ +G
Sbjct: 63 GLVVGIDI--LDISPIEA-KNFYFIKGNLLDKETLKKSAEICKE--YDTVISDAAPNTTG 117
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D S+EL + A VLKP G+ + KL + +D +
Sbjct: 118 NKLTDHVNSLELVSTVFNFA------------------KEVLKPEGNFLFKLFDGEDRE 158
>gi|161528903|ref|YP_001582729.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosopumilus maritimus
SCM1]
gi|226705297|sp|A9A3M9.1|RLME_NITMS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|160340204|gb|ABX13291.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosopumilus maritimus
SCM1]
Length = 197
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 73/136 (53%), Gaps = 17/136 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A G+ +R+A+KL ++ + Y++I PG VLDLGCAPG W Q+A + G N
Sbjct: 9 DHYRKLAHEQGFRSRAAYKLKELNQSYRIIGPGFYVLDLGCAPGGWTQMAIKLAG---NQ 65
Query: 68 GSVVGIDVKKV-KVPS---LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+GID+ V ++P L D + V DV+N +V A ++ D+ P
Sbjct: 66 GKVMGIDLSYVEEIPGAEILRGDIEDENVVDDVMNYFERKVNA----------VICDLSP 115
Query: 124 SVSGITTKDAALSVEL 139
VSG + D A + L
Sbjct: 116 KVSGNWSVDHAKQISL 131
>gi|15676697|ref|NP_273841.1| cell division protein FtsJ [Neisseria meningitidis MC58]
gi|161869743|ref|YP_001598910.1| cell division protein [Neisseria meningitidis 053442]
gi|218767917|ref|YP_002342429.1| cell division protein [Neisseria meningitidis Z2491]
gi|304387890|ref|ZP_07370064.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis ATCC 13091]
gi|385324447|ref|YP_005878886.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
methyltransferase; cell division protein FtsJ)
[Neisseria meningitidis 8013]
gi|385328133|ref|YP_005882436.1| putative cell division protein [Neisseria meningitidis alpha710]
gi|385337751|ref|YP_005891624.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
methyltransferase; cell division protein FtsJ)
[Neisseria meningitidis WUE 2594]
gi|385339773|ref|YP_005893645.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis G2136]
gi|385342200|ref|YP_005896071.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240149]
gi|385851537|ref|YP_005898052.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M04-240196]
gi|385853513|ref|YP_005900027.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis H44/76]
gi|385856953|ref|YP_005903465.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NZ-05/33]
gi|416162842|ref|ZP_11606851.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis N1568]
gi|416172576|ref|ZP_11608769.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis OX99.30304]
gi|416183699|ref|ZP_11612712.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M13399]
gi|416188196|ref|ZP_11614665.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M0579]
gi|416213911|ref|ZP_11622604.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240013]
gi|421544174|ref|ZP_15990252.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM140]
gi|421546284|ref|ZP_15992333.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM183]
gi|421548553|ref|ZP_15994578.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM2781]
gi|421550353|ref|ZP_15996358.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 69166]
gi|421552578|ref|ZP_15998552.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM576]
gi|421563027|ref|ZP_16008849.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM2795]
gi|421565089|ref|ZP_16010875.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM3081]
gi|421906595|ref|ZP_16336488.1| cell division protein FtsJ [Neisseria meningitidis alpha704]
gi|427828521|ref|ZP_18995537.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
H44/76]
gi|433464782|ref|ZP_20422267.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM422]
gi|433466949|ref|ZP_20424406.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
87255]
gi|433468956|ref|ZP_20426385.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
98080]
gi|433471197|ref|ZP_20428588.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
68094]
gi|433473203|ref|ZP_20430567.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97021]
gi|433475409|ref|ZP_20432750.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
88050]
gi|433477288|ref|ZP_20434611.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
70012]
gi|433479507|ref|ZP_20436801.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63041]
gi|433481752|ref|ZP_20439017.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2006087]
gi|433483738|ref|ZP_20440966.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2002038]
gi|433485937|ref|ZP_20443138.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97014]
gi|433488033|ref|ZP_20445201.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M13255]
gi|433490151|ref|ZP_20447280.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM418]
gi|433504558|ref|ZP_20461498.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
9506]
gi|433506821|ref|ZP_20463733.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
9757]
gi|433509002|ref|ZP_20465875.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
12888]
gi|433511066|ref|ZP_20467898.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
4119]
gi|433513158|ref|ZP_20469952.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63049]
gi|433515471|ref|ZP_20472243.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2004090]
gi|433517305|ref|ZP_20474054.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
96023]
gi|433519525|ref|ZP_20476246.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
65014]
gi|433521627|ref|ZP_20478322.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
61103]
gi|433523594|ref|ZP_20480259.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97020]
gi|433525670|ref|ZP_20482304.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
69096]
gi|433527914|ref|ZP_20484525.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM3652]
gi|433530088|ref|ZP_20486681.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM3642]
gi|433532346|ref|ZP_20488912.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2007056]
gi|433534230|ref|ZP_20490775.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2001212]
gi|433538680|ref|ZP_20495160.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
70030]
gi|433540658|ref|ZP_20497113.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63006]
gi|81542244|sp|Q9JQX5.1|RLME_NEIMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|81707224|sp|Q7DDL2.1|RLME_NEIMB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040316|sp|A9M3N1.1|RLME_NEIM0 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|7226032|gb|AAF41212.1| cell division protein FtsJ [Neisseria meningitidis MC58]
gi|121051925|emb|CAM08231.1| putative cell division protein [Neisseria meningitidis Z2491]
gi|161595296|gb|ABX72956.1| cell division protein [Neisseria meningitidis 053442]
gi|261392834|emb|CAX50415.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
methyltransferase; cell division protein FtsJ)
[Neisseria meningitidis 8013]
gi|304338155|gb|EFM04291.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis ATCC 13091]
gi|308388985|gb|ADO31305.1| putative cell division protein [Neisseria meningitidis alpha710]
gi|316983790|gb|EFV62771.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
H44/76]
gi|319410165|emb|CBY90501.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase; 23S rRNA m2U2552
methyltransferase; cell division protein FtsJ)
[Neisseria meningitidis WUE 2594]
gi|325127924|gb|EGC50827.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis N1568]
gi|325129969|gb|EGC52768.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis OX99.30304]
gi|325134056|gb|EGC56711.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M13399]
gi|325135979|gb|EGC58589.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M0579]
gi|325144164|gb|EGC66471.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240013]
gi|325198017|gb|ADY93473.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis G2136]
gi|325200517|gb|ADY95972.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis H44/76]
gi|325202406|gb|ADY97860.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240149]
gi|325206360|gb|ADZ01813.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M04-240196]
gi|325207842|gb|ADZ03294.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NZ-05/33]
gi|393292343|emb|CCI72429.1| cell division protein FtsJ [Neisseria meningitidis alpha704]
gi|402324019|gb|EJU59457.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM183]
gi|402324286|gb|EJU59722.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM140]
gi|402326214|gb|EJU61619.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM2781]
gi|402330568|gb|EJU65915.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 69166]
gi|402331210|gb|EJU66551.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM576]
gi|402341734|gb|EJU76907.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM2795]
gi|402345418|gb|EJU80535.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM3081]
gi|432203525|gb|ELK59576.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
87255]
gi|432204269|gb|ELK60314.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM422]
gi|432205349|gb|ELK61379.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
98080]
gi|432209686|gb|ELK65653.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
68094]
gi|432210804|gb|ELK66760.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97021]
gi|432211227|gb|ELK67182.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
88050]
gi|432216510|gb|ELK72391.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
70012]
gi|432217310|gb|ELK73179.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63041]
gi|432217583|gb|ELK73451.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2006087]
gi|432221441|gb|ELK77251.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2002038]
gi|432222983|gb|ELK78765.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97014]
gi|432224499|gb|ELK80264.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
M13255]
gi|432228059|gb|ELK83760.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM418]
gi|432242073|gb|ELK97597.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
9506]
gi|432242610|gb|ELK98128.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
9757]
gi|432247816|gb|ELL03251.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
12888]
gi|432248557|gb|ELL03982.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
4119]
gi|432248835|gb|ELL04259.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63049]
gi|432254059|gb|ELL09395.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2004090]
gi|432254314|gb|ELL09649.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
96023]
gi|432255516|gb|ELL10845.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
65014]
gi|432260400|gb|ELL15659.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
61103]
gi|432260493|gb|ELL15751.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
97020]
gi|432261861|gb|ELL17106.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
69096]
gi|432266221|gb|ELL21409.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM3652]
gi|432268016|gb|ELL23188.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM3642]
gi|432268291|gb|ELL23462.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2007056]
gi|432272740|gb|ELL27847.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
2001212]
gi|432274688|gb|ELL29775.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
70030]
gi|432277673|gb|ELL32719.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
63006]
Length = 206
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|300869923|ref|YP_003784794.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
95/1000]
gi|404476247|ref|YP_006707678.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
B2904]
gi|300687622|gb|ADK30293.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
95/1000]
gi|404437736|gb|AFR70930.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
B2904]
Length = 194
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 30/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF++++A+ Y ARS FKL + Q ++K IK +VLD+GC+PG++ Q L +
Sbjct: 6 DFYFKKAKEENYKARSVFKLEEAQNKFKFIKSSDNVLDVGCSPGSFSQYM---LNKIIKT 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
GSVVG+D+ +P+ R + + D+ + ++ + F V++SD P+
Sbjct: 63 GSVVGVDI----LPNNFSHQRFKFILGDIKEMDASTFDNIE-----FDVVVSDAMPN--- 110
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
TT D + +R++ L LA VLK G+ IK+ + +D
Sbjct: 111 -TTSDRETN---HLRSIGLCEKIFYLA-----------KDVLKDNGNFFIKVFDGKD 152
>gi|148361109|ref|YP_001252316.1| ribosomal RNA large subunit methyltransferase J [Legionella
pneumophila str. Corby]
gi|148282882|gb|ABQ56970.1| ribosomal RNA large subunit methyltransferase J [Legionella
pneumophila str. Corby]
Length = 233
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL +I + LIKPG +V+DLG APG W Q A + +
Sbjct: 44 DVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQYASEK---MKGS 100
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V +D+ + V + D R V ++INL Q+ ++LSDM P
Sbjct: 101 GRLVALDILPMDALPNVEFILGDFREDNVLQELINLIP---------QRTLDLLLSDMAP 151
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG +A+ + M V+LA A +LKPGG++++K+
Sbjct: 152 NMSG----SSAIDIPRAMYLVELAFDFA--------------EKMLKPGGNMLVKIFH 191
>gi|301631567|ref|XP_002944869.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Xenopus
(Silurana) tropicalis]
Length = 246
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 11/146 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD-- 65
D + REAQ Y RSAFKLL+I ++ +++PG V+D G APGAW QVA + + L
Sbjct: 45 DPYVREAQTHNYRCRSAFKLLEIDNKHHILQPGHHVIDCGAAPGAWSQVAVEKVNSLGRD 104
Query: 66 ---NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDM 121
+ G VVG+D+ + P D V ++D+ + + ++ ++ P K VILSDM
Sbjct: 105 SAASAGFVVGVDLLNI-AP---LDGAVFLSNSDITDFDTQKKIISVLPSGKA-DVILSDM 159
Query: 122 CPSVSGITTKDAALSVELGMRAVDLA 147
P+ +GI D V + + ++L+
Sbjct: 160 APNATGIRDLDHQRLVNMCLSLLELS 185
>gi|392551925|ref|ZP_10299062.1| 23S rRNA methyltransferase J [Pseudoalteromonas spongiae
UST010723-006]
Length = 209
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 38/182 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EA++LGY +R+ FK+ ++ K+ KLI+PG +V+DLG APG W Q A +G +
Sbjct: 20 DVYANEARKLGYRSRAYFKIEELDKKDKLIRPGLTVVDLGAAPGGWSQYAADKVG---DN 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV--ILSDM 121
G+V+ D+ + V L D R + V + AL + G +V ++SDM
Sbjct: 77 GTVISCDILPMDPLPGVEFLQGDFREEAV-----------LDALLSRIDGKNVDLVMSDM 125
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P++SG D A S+ L A D+ VLKP G+ +K+ +
Sbjct: 126 APNMSGNNVTDQAGSMYLVELAFDMC------------------HQVLKPNGNFAVKVFQ 167
Query: 182 SQ 183
+
Sbjct: 168 GE 169
>gi|403530064|ref|YP_006664593.1| cell division protein ftsJ [Bartonella quintana RM-11]
gi|403232136|gb|AFR25879.1| cell division protein ftsJ [Bartonella quintana RM-11]
Length = 241
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 42/183 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL+++ ++YK +K G ++DLG APG W QVA + +G D
Sbjct: 45 DPYVHQSKIDGYRSRAAYKLIEMNERYKFLKKGQKIIDLGAAPGGWCQVAQRIVGSSDEK 104
Query: 68 GSVVGID---------VKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
SVVGID V +++ LH DA P + AL K V+L
Sbjct: 105 PSVVGIDYLPVVPLPGVIMLEMDFLHTDA------------PQKLIDALGTKP---DVVL 149
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM G D ++ L A D AL VLK GGH ++K
Sbjct: 150 SDMAAPTIGHRQTDYLRTIYLCEVAADFAL------------------SVLKSGGHFLVK 191
Query: 179 LLE 181
+
Sbjct: 192 AFQ 194
>gi|395514749|ref|XP_003761575.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Sarcophilus
harrisii]
Length = 246
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 29/180 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D F + A+ Y RSAFKLL+I +++++ +PG VLD G APGAW QVA Q +
Sbjct: 41 DPFVKAAKVENYRCRSAFKLLEINEKHQIFRPGLRVLDCGAAPGAWSQVAVQKVNAAGTD 100
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDM 121
P G V+G+D+ V + + SADV + + +++ P QK VILSDM
Sbjct: 101 PTSPAGFVLGVDLLHV----FPLEGAIFLCSADVTDPRTFKKIQEQLPGQKA-DVILSDM 155
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+ +G D + + + ++ A S +L PGG + K +
Sbjct: 156 APNATGFRELDHQKLINMCLSLLNFA------------------SSILHPGGTFLCKFWD 197
>gi|434381835|ref|YP_006703618.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
WesB]
gi|404430484|emb|CCG56530.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Brachyspira pilosicoli
WesB]
Length = 194
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 30/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF++++A+ Y ARS FKL + Q ++K IK +VLD+GC+PG++ Q L +
Sbjct: 6 DFYFKKAKEENYKARSVFKLEEAQNKFKFIKSSDNVLDVGCSPGSFSQYM---LNKIIKT 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
GSVVG+D+ +P+ R + + D+ + ++ + F V++SD P+
Sbjct: 63 GSVVGVDI----LPNSFSHQRFKFILGDIKEMDASTFDNIE-----FDVVVSDAMPN--- 110
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
TT D + +R++ L LA VLK G+ IK+ + +D
Sbjct: 111 -TTSDRETN---HLRSIGLCEKIFYLA-----------KDVLKDNGNFFIKVFDGKD 152
>gi|440637398|gb|ELR07317.1| hypothetical protein GMDG_02497 [Geomyces destructans 20631-21]
Length = 304
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 34/204 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F REA+ G +R+AFKLL+I +YKL K G +V+DLG APG+W QVA + P
Sbjct: 61 DSFAREAKVRGLQSRAAFKLLEIDSKYKLFKKGQTVIDLGYAPGSWSQVAVERTKP---N 117
Query: 68 GSVVGIDVKKVKVP----SLHCDARVQTVSADVINL--------PSNQVRALSPKQKGFS 115
G ++GID+ + P ++ + + V A++ P Q+ A ++ G
Sbjct: 118 GRIIGIDIIPAQPPKGVSTIQGNFLSKDVQAEIKRFLNDPHRGRPQQQMHAPMAEEPGLE 177
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALAS---PVNNSDSSTD------- 165
L D+ + G KD E G + +D+ L + + P + S D
Sbjct: 178 DSLEDVPTADKGKKLKD-----ESG-KTIDIVLSDMMMNTSGIPFRDHTGSMDLCNAALE 231
Query: 166 --SGVLKPGGHLVIKLLE-SQDAQ 186
LK GGH V K + ++D Q
Sbjct: 232 FSYDTLKTGGHFVCKFYQGAEDKQ 255
>gi|409405172|ref|ZP_11253634.1| 23S rRNA methyltransferase [Herbaspirillum sp. GW103]
gi|386433721|gb|EIJ46546.1| 23S rRNA methyltransferase [Herbaspirillum sp. GW103]
Length = 215
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 89/174 (51%), Gaps = 26/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I ++ +LIKPG ++DLGC PG+W Q A L G
Sbjct: 17 DPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPGSWCQYARNKLA----G 72
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPS 124
GI + + L D A V + D + P Q+ A+ +K ++LSDM P+
Sbjct: 73 AEGGGIHGTIIGLDILPMDPIADVHYIQGDFREDEPVRQLEAVLEGRKA-DLVLSDMAPN 131
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
+SG+ DAA L +DLA+ A L +KPGG L++K
Sbjct: 132 LSGVAIADAARVEYL----IDLAIDFAQLH--------------MKPGGALLVK 167
>gi|402496451|ref|YP_006555711.1| 23S rRNA methylase [Wolbachia endosymbiont of Onchocerca ochengi]
gi|398649724|emb|CCF77894.1| 23S rRNA methylase [Wolbachia endosymbiont of Onchocerca ochengi]
Length = 197
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 15/141 (10%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++ + GY +RSA+KL++I ++KL++ G ++DLG PG W QVA Q G
Sbjct: 7 DKYVQKTNKDGYRSRSAYKLIEIDNKFKLLQKGQKIIDLGAFPGGWSQVASQK------G 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMCPSVS 126
++V ID+K V + VQ + D+IN L + + R K F VILSDM P
Sbjct: 61 ANIVAIDIKPVNSIN-----GVQHMQCDIINELETLKERFEDQK---FDVILSDMAPESC 112
Query: 127 GITTKDAALSVELGMRAVDLA 147
GI + D + L A++LA
Sbjct: 113 GIKSLDHIRIMFLCKAALNLA 133
>gi|327282720|ref|XP_003226090.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Anolis
carolinensis]
Length = 241
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 29/185 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D + ++A++ Y RSAFKL++I ++ +++PG V+D G APGAW QVA Q +
Sbjct: 41 DPYVKKARQRSYRCRSAFKLIEIDDKHGILRPGLHVVDCGTAPGAWAQVAVQRVNAEGSD 100
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
P G V+G D+ + + V +D+ + + Q +R PK K V+LSDM
Sbjct: 101 PDTPVGFVLGFDLLHISP----LEGAVFLPHSDLTDPSTRQKIRDSLPKGKA-DVVLSDM 155
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+ +GI D + L + +DLA +L PGG L+ K E
Sbjct: 156 APNATGIRELDHDRLIRLCLSLLDLA------------------PHILHPGGTLLCKFWE 197
Query: 182 SQDAQ 186
S++++
Sbjct: 198 SKESR 202
>gi|325276157|ref|ZP_08141962.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. TJI-51]
gi|324098694|gb|EGB96735.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas sp. TJI-51]
Length = 208
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 18 DPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 74
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G ++ D+ ++ +P V + D Q + +++SDM P++S
Sbjct: 75 GRLIASDILEMDSIPD------VTFIQGDFTEDAVLQQILDAVGDSHVDLVISDMAPNMS 128
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G D ++ L A+DLA + VLKPGG +IK+ + +
Sbjct: 129 GTPEVDMPRAMFLCELALDLA------------------TRVLKPGGDFLIKIFQGE 167
>gi|170719899|ref|YP_001747587.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida W619]
gi|226705301|sp|B1J262.1|RLME_PSEPW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|169757902|gb|ACA71218.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida W619]
Length = 208
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 18 DPFVKQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 74
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G ++ D+ ++ +P V + D Q + +++SDM P++S
Sbjct: 75 GRLIASDILEMDSIPD------VTFIQGDFTQDEVLQQILDAVGDSHVDLVISDMAPNMS 128
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G D ++ L A+DLA + VLKPGG +IK+ + +
Sbjct: 129 GTPEVDMPRAMFLCELALDLA------------------TRVLKPGGDFLIKIFQGE 167
>gi|120553329|ref|YP_957680.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter aquaeolei
VT8]
gi|143460489|sp|A1TXM4.1|RLME_MARAV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120323178|gb|ABM17493.1| 23S rRNA Um-2552 2'-O-methyltransferase [Marinobacter aquaeolei
VT8]
Length = 207
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+I + +LIKP V+DLG APG W QVA + +G +
Sbjct: 17 DPFVKQAQQDGYRSRASYKLLEINNKDRLIKPTDLVVDLGSAPGGWSQVAAKLVG---HK 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVS 126
G VV D+ +P + A V+ + D +Q+ A+ + V++SDM P++S
Sbjct: 74 GRVVASDI----LP-MDPIAGVEFIQGDFTEQEVFDQIMAILDGARA-DVVISDMAPNIS 127
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G+ D A S+ L A+D+A VLKP G V K+ +
Sbjct: 128 GVNAADQAASMYLVELALDMA------------------CQVLKPKGSFVAKVFHGE 166
>gi|385333356|ref|YP_005887307.1| ribosomal RNA large subunit methyltransferase J [Marinobacter
adhaerens HP15]
gi|311696506|gb|ADP99379.1| ribosomal RNA large subunit methyltransferase J [Marinobacter
adhaerens HP15]
Length = 206
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ GY +R+++KLL+I K+ +LI P V+DLG APG W QVA + +G +
Sbjct: 17 DPFVKQAQVDGYRSRASYKLLEINKKDRLIHPNMVVVDLGSAPGGWSQVAAKLVG---HK 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D+ +P + A V + D + + V++SDM P++SG
Sbjct: 74 GRVIASDI----LP-MDAIAGVDFIQGDFTENDVFESIMATLGDDPVDVVISDMAPNISG 128
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+T D A S+ L A+D+A S VLKP G + K+ + +
Sbjct: 129 VTVADQASSMYLVELALDMA------------------SQVLKPKGSFLAKVFQGE 166
>gi|374316396|ref|YP_005062824.1| 23S rRNA methylase [Sphaerochaeta pleomorpha str. Grapes]
gi|359352040|gb|AEV29814.1| 23S rRNA methylase [Sphaerochaeta pleomorpha str. Grapes]
Length = 201
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 25/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A + GY ARS +KL +IQ +KL+KPG SVLD+G APG+W + L L
Sbjct: 10 DSYTKRAHKEGYPARSVYKLEEIQNTFKLVKPGDSVLDVGAAPGSWTLFTHRVL--LKEQ 67
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++ +D+ L+ + TV+A V + S +R+ + + VI+SD+ P G
Sbjct: 68 GKIIAVDLN-----PLNLNPIPHTVTAFVGDAFSKDIRSKLVENGPYDVIISDVAPMTMG 122
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ D + S L + + LA S LK G+LV+K+ +
Sbjct: 123 NRSVDTSRSEYLASQVIYLA------------------SEHLKVHGNLVVKVFQ 158
>gi|417956688|ref|ZP_12599640.1| ribosomal RNA large subunit methyltransferase J [Neisseria weaveri
ATCC 51223]
gi|343970335|gb|EGV38513.1| ribosomal RNA large subunit methyltransferase J [Neisseria weaveri
ATCC 51223]
Length = 206
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTILADLGSAPGSWSQVAAKLVGK---N 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R + V +L N + +++ DM P
Sbjct: 75 GQVFALDILPMDDIEGVSFIQGDFREEQVLNQFESLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG+ ++K+ +
Sbjct: 126 NMSGNAVTDQARSFYLCELALDFA------------------SEHLKTGGNFLVKVFQ 165
>gi|357635759|ref|ZP_09133637.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio sp.
FW1012B]
gi|357584313|gb|EHJ49646.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio sp.
FW1012B]
Length = 201
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 25/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A+ Y ARS +KL +I+KQ +L+ PG+ VLDLG PG+W + +GP
Sbjct: 6 DHYFNKAKLENYPARSVYKLQEIEKQSRLLVPGAKVLDLGACPGSWTLFTAKRIGP---Q 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ ID+ V + D+++ + + A + F V++SDM P +G
Sbjct: 63 GRVLAIDLNPA---GTEFPDNVTYLLGDMLDPGPDILEAFAAFGP-FDVVISDMAPQTTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
I D S+EL A+ +A L+PGG V+K+ + DA
Sbjct: 119 IKFTDQCRSLELCEAALSVA------------------RERLRPGGGFVVKIFQGPDA 158
>gi|348509376|ref|XP_003442225.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Oreochromis niloticus]
Length = 239
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D + + +Q + RSAFKLL+I +++L++PG +V+D G APGAW QVA Q +
Sbjct: 38 DPYVKASQAQNFRCRSAFKLLEIDDKFRLLQPGYAVVDCGAAPGAWSQVAVQRVNSAVTD 97
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALS--PKQKGFSVILSD 120
P G VVGID+ + +P L D S DV + P+ + L P K VILSD
Sbjct: 98 PELPRGMVVGIDL--LNIPPL--DGAHFLSSCDVTD-PATHAKLLELLPHGKA-HVILSD 151
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLA 147
M P+ SG D + + + +DLA
Sbjct: 152 MAPNASGFREMDHERLITMCLSLIDLA 178
>gi|387823985|ref|YP_005823456.1| Cell division protein ftsJ / Ribosomal RNA large subunit
methyltransferase J [Francisella cf. novicida 3523]
gi|328675584|gb|AEB28259.1| Cell division protein ftsJ / Ribosomal RNA large subunit
methyltransferase J [Francisella cf. novicida 3523]
Length = 206
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y+L KP V+DLG APG W + + +G
Sbjct: 17 DYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQVIKYIGK---N 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
G ++ +D+ ++ P A V+ + D + + Q + L QK ++SDM P++S
Sbjct: 74 GKLIALDLLEM-API----AGVEFIQGDFCSDDTYQKLNTLVNNQK-IDCVISDMAPNLS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G T D A S+ L A+D A
Sbjct: 128 GNKTSDQAKSIYLLELALDFA 148
>gi|209883044|ref|XP_002142954.1| rRNA (uridine-2'-O-)-methyltransferase 3 [Cryptosporidium muris
RN66]
gi|209558560|gb|EEA08605.1| rRNA (uridine-2'-O-)-methyltransferase 3, putative [Cryptosporidium
muris RN66]
Length = 920
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 34/181 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY ARSAFKL+Q+ ++Y + K ++DL APG WLQVA + +G
Sbjct: 13 DRYYHLAKEQGYRARSAFKLIQLAQKYDIFKNCQVLVDLCAAPGGWLQVAKRHMGV---S 69
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
++G+D+ +K V + CD + ++ N + LS V+L D P
Sbjct: 70 SKIIGVDLVSIKSIPGVTTFKCDITTEQCKKLIL----NNLEGLS-----VDVVLHDGAP 120
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+V +DA + EL + + LA +L+PGG + K+ S
Sbjct: 121 NVGTSWNRDAYIQNELVVHSTKLA------------------CDILRPGGIFITKIFRSS 162
Query: 184 D 184
D
Sbjct: 163 D 163
>gi|88606902|ref|YP_505099.1| ribosomal RNA large subunit methyltransferase J [Anaplasma
phagocytophilum HZ]
gi|123495326|sp|Q2GKK2.1|RLME_ANAPZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|88597965|gb|ABD43435.1| ribosomal RNA large subunit methyltransferase J [Anaplasma
phagocytophilum HZ]
Length = 247
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 14 AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVG 72
A++ GY +RSA+KL++I ++K+++ G VLDLG +PG W QVA ++ +D+ +VV
Sbjct: 62 AKKEGYRSRSAYKLIEINDKFKILQRGRFVLDLGSSPGGWAQVASKNTAIIDSTEPTVVA 121
Query: 73 IDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI 128
+D++ +K V + CD D++N LS ++ F V+LSDM P G
Sbjct: 122 VDIQSMKDIHNVSFVQCDI---DSDHDLLN------EKLSGRK--FDVVLSDMAPKSCGH 170
Query: 129 TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A + L A D+AL L P G V KLL + Q
Sbjct: 171 RQVDHANIINLCELARDIAL------------------EYLNPNGSFVTKLLHGEYEQ 210
>gi|56708013|ref|YP_169909.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110670484|ref|YP_667041.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. tularensis FSC198]
gi|134302197|ref|YP_001122166.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. tularensis WY96-3418]
gi|187931311|ref|YP_001891295.1| 23S rRNA methylase [Francisella tularensis subsp. mediasiatica
FSC147]
gi|208780502|ref|ZP_03247842.1| ribosomal RNA large subunit methyltransferase J [Francisella
novicida FTG]
gi|254368671|ref|ZP_04984685.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica FSC022]
gi|254370496|ref|ZP_04986501.1| hypothetical protein FTBG_00272 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874812|ref|ZP_05247522.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. tularensis MA00-2987]
gi|379717253|ref|YP_005305589.1| Ribosomal RNA large subunit methyltransferase E [Francisella
tularensis subsp. tularensis TIGB03]
gi|379725857|ref|YP_005318043.1| cell division protein FtsJ [Francisella tularensis subsp.
tularensis TI0902]
gi|421752027|ref|ZP_16189062.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis AS_713]
gi|421753885|ref|ZP_16190873.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 831]
gi|421755548|ref|ZP_16192491.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 80700075]
gi|421757607|ref|ZP_16194484.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 80700103]
gi|421759460|ref|ZP_16196292.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 70102010]
gi|424674782|ref|ZP_18111696.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 70001275]
gi|81597551|sp|Q5NGD3.1|RLME_FRATT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|123359494|sp|Q14HT5.1|RLME_FRAT1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|158513855|sp|A4IYP4.1|RLME_FRATW RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703306|sp|B2SF85.1|RLME_FRATM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56604505|emb|CAG45545.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. tularensis SCHU S4]
gi|110320817|emb|CAL08928.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. tularensis FSC198]
gi|134049974|gb|ABO47045.1| ribosomal RNA large subunit methyltransferase J [Francisella
tularensis subsp. tularensis WY96-3418]
gi|151568739|gb|EDN34393.1| hypothetical protein FTBG_00272 [Francisella tularensis subsp.
tularensis FSC033]
gi|157121586|gb|EDO65763.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica FSC022]
gi|187712220|gb|ACD30517.1| 23S rRNA methylase [Francisella tularensis subsp. mediasiatica
FSC147]
gi|208743648|gb|EDZ89952.1| ribosomal RNA large subunit methyltransferase J [Francisella
novicida FTG]
gi|254840811|gb|EET19247.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. tularensis MA00-2987]
gi|377827306|gb|AFB80554.1| Cell division protein FtsJ [Francisella tularensis subsp.
tularensis TI0902]
gi|377828930|gb|AFB79009.1| Cell division protein FtsJ [Francisella tularensis subsp.
tularensis TIGB03]
gi|409086031|gb|EKM86154.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis AS_713]
gi|409086190|gb|EKM86312.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 831]
gi|409087976|gb|EKM88061.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 80700075]
gi|409090841|gb|EKM90849.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 70102010]
gi|409092226|gb|EKM92203.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 80700103]
gi|417434456|gb|EKT89406.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
tularensis 70001275]
Length = 206
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y+L KP V+DLG APG W + + +G
Sbjct: 17 DYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQVIKYIGK---N 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
G ++ +D+ ++ P A V+ + D + + Q + L QK ++SDM P++S
Sbjct: 74 GKLIALDLLEM-API----AGVEFIQGDFSSDETYQKLNTLVNNQK-IDCVISDMAPNLS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G T D A S+ L A+D A
Sbjct: 128 GNKTSDQAKSIYLLELALDFA 148
>gi|259089269|ref|NP_001158672.1| ribosomal RNA methyltransferase 2 [Oncorhynchus mykiss]
gi|225705722|gb|ACO08707.1| ribosomal RNA methyltransferase 2 [Oncorhynchus mykiss]
Length = 244
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 76/147 (51%), Gaps = 13/147 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD-N 66
D F + A Y RSAFKLL+I +YKL+KPG +V+D G APGAW Q+A + N
Sbjct: 42 DPFVKAAHVHNYRCRSAFKLLEIDDKYKLLKPGFNVIDCGAAPGAWSQIAVHRVNSTGAN 101
Query: 67 G----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALS--PKQKGFSVILSD 120
G G+VVGID+ ++ P D +S I P + L P + VI+SD
Sbjct: 102 GEFPRGTVVGIDLLRI-AP---LDG-AHFLSNHDITDPVTHAKLLELLPGAQA-HVIMSD 155
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLA 147
M P+ SG D + + + +DLA
Sbjct: 156 MAPNASGFKEMDHEKLITMSLSLIDLA 182
>gi|254373876|ref|ZP_04989358.1| ribosomal large subunit methyltransferase J [Francisella novicida
GA99-3548]
gi|151571596|gb|EDN37250.1| ribosomal large subunit methyltransferase J [Francisella novicida
GA99-3548]
Length = 206
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y+L KP V+DLG APG W + + +G
Sbjct: 17 DYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQVIKYIGK---N 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
G ++ +D+ ++ P A V+ + D + + Q + L QK ++SDM P++S
Sbjct: 74 GKLIALDLLEM-API----AGVEFIQGDFSSDETYQKLNTLVNNQK-IDCVISDMAPNLS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G T D A S+ L A+D A
Sbjct: 128 GNKTSDQAKSIYLLELALDFA 148
>gi|344289813|ref|XP_003416635.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Loxodonta africana]
Length = 260
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 29/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D F + A+ Y RSAFKLL++ +++++++PG VLD G APGAW QVA QS+
Sbjct: 55 DPFVKAAKVESYRCRSAFKLLEVDERHRILRPGLRVLDCGAAPGAWSQVAVQSVNAAGTD 114
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
P G V+G+D+ + + ADV + + Q +R L P + VILSDM
Sbjct: 115 PSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTFQRIRELLPGHRA-DVILSDM 169
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
P+ +GI D + L +DLA +L PGG + K+
Sbjct: 170 APNATGIRDLDHNRLISLCWSLLDLA------------------QHILHPGGTFLCKI 209
>gi|52842994|ref|YP_096793.1| ribosomal RNA large subunit methyltransferase J [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|378778679|ref|YP_005187121.1| ribosomal RNA large subunit methyltransferase J [Legionella
pneumophila subsp. pneumophila ATCC 43290]
gi|52630105|gb|AAU28846.1| ribosomal RNA large subunit methyltransferase J [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|364509497|gb|AEW53021.1| ribosomal RNA large subunit methyltransferase J [Legionella
pneumophila subsp. pneumophila ATCC 43290]
Length = 247
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL +I + LIKPG +V+DLG APG W Q A + +
Sbjct: 58 DVYVKKAQAEGYRSRAVYKLKEIDDKESLIKPGMTVVDLGAAPGGWTQYASEK---MRGS 114
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V +D+ + V + D R V ++INL Q+ ++LSDM P
Sbjct: 115 GRLVALDILPMDALPNVEFILGDFREDNVLQELINLIP---------QRTLDLLLSDMAP 165
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG +A+ + M V+LA A +LKPGG++++K+
Sbjct: 166 NMSG----SSAIDIPRAMYLVELAFDFA--------------EKMLKPGGNMLVKIFH 205
>gi|241953819|ref|XP_002419631.1| 2'-O-ribose tRNA anticodon loop methyltransferase, putative; tRNA
(uridine-2'-O-)-methyltransferase, putative [Candida
dubliniensis CD36]
gi|223642971|emb|CAX43227.1| 2'-O-ribose tRNA anticodon loop methyltransferase, putative
[Candida dubliniensis CD36]
Length = 293
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ +++ L + + V+DL APG+W QV Q LGP
Sbjct: 10 DLYYRRAKEEGWRARSAFKLLQLNEEFDLFEGITRVVDLCAAPGSWSQVLSQKLGP---N 66
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
++V +D++ P D V T+ AD+ + + Q + + SD P V+G
Sbjct: 67 STIVAVDLQ----PMTPIDG-VTTIQADITHPKTLQRIRDCFGGEPADFVCSDGAPDVTG 121
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D + +L + A+ L + +LKPGG V K+ +D
Sbjct: 122 LHDLDEYIQSQLILSALQLT------------------TCLLKPGGSFVAKIFRGRD 160
>gi|389683207|ref|ZP_10174539.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
chlororaphis O6]
gi|399004735|ref|ZP_10707344.1| 23S rRNA methylase [Pseudomonas sp. GM17]
gi|425897473|ref|ZP_18874064.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|388552720|gb|EIM15981.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
chlororaphis O6]
gi|397892621|gb|EJL09099.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|398128875|gb|EJM18255.1| 23S rRNA methylase [Pseudomonas sp. GM17]
Length = 209
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPFVKMAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGTPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|398806574|ref|ZP_10565479.1| 23S rRNA methylase [Polaromonas sp. CF318]
gi|398087919|gb|EJL78496.1| 23S rRNA methylase [Polaromonas sp. CF318]
Length = 251
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 38/186 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I + + L+KPG V+DLG PGAW Q + L P
Sbjct: 48 DPYVKLAQKEGYRARAAYKLKEIDETFGLVKPGDCVVDLGSTPGAWSQYVRRKLSPAGAA 107
Query: 68 -----GSVVGIDVKKVK----VPSLHCDARVQTV---SADVINLPSNQVRALSPKQKGFS 115
G ++G+D+ ++ V + D R V D + P QV+
Sbjct: 108 AGTLNGRIIGLDLLPMEPIEGVTFIQGDFREAEVLQQLEDTLAGPDGQVQV--------D 159
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175
+++SDM P++SGI + DAA L AV+ A +KP G L
Sbjct: 160 LVISDMAPNLSGIESADAARIAHLIELAVEFA------------------QNRMKPDGTL 201
Query: 176 VIKLLE 181
V+KL
Sbjct: 202 VVKLFH 207
>gi|385794666|ref|YP_005831072.1| ribosomal RNA large subunit methyltransferase J [Francisella
tularensis subsp. tularensis NE061598]
gi|282159201|gb|ADA78592.1| ribosomal RNA large subunit methyltransferase J [Francisella
tularensis subsp. tularensis NE061598]
Length = 206
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 8/140 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y+L KP V+DLG APG W + + +G
Sbjct: 17 DYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQVIKYIGK---N 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++ +D+ ++ P A V+ + D + + Q + ++SDM P++SG
Sbjct: 74 GKLIALDLLEM-API----AGVEFIQGDFSSDETYQKLNTFVNNQKIDCVISDMAPNLSG 128
Query: 128 ITTKDAALSVELGMRAVDLA 147
T D A S+ L A+D A
Sbjct: 129 NKTSDQAKSIYLLELALDFA 148
>gi|340378878|ref|XP_003387954.1| PREDICTED: putative rRNA methyltransferase 3-like [Amphimedon
queenslandica]
Length = 782
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY A+ GY ARSAFKL+Q+ ++++ ++ ++DL APG WLQVA Q + P+ +
Sbjct: 13 DKFYHLAKETGYRARSAFKLIQLNRKFQFLQKSRVLIDLCAAPGGWLQVASQHM-PVSS- 70
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
++G+D+ +K +P+ T+ AD+ + K +L+D P+V
Sbjct: 71 -LIIGVDLVSIKPIPN------AITIQADITTPNCRHLIQKELKTWKVDCVLNDGAPNVG 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
+DA L + A+ LA + LKPGG V K+ S+D Q
Sbjct: 124 SAWIQDAFSQARLTLSALKLA------------------TDFLKPGGWFVTKVFRSKDYQ 165
>gi|54112769|gb|AAV29018.1| NT02FT0627 [synthetic construct]
Length = 206
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y+L KP V+DLG APG W + + +G
Sbjct: 17 DYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGAAPGGWSEQVIKYIGK---N 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
G ++ +D+ ++ P A V+ + D + + Q + L QK ++SDM P++S
Sbjct: 74 GKLIALDLLEM-API----AGVEFIQGDFSSDETYQKLNTLVNNQK-IDCVISDMAPNLS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G T D A S+ L A+D A
Sbjct: 128 GNKTSDQAKSIYLLELALDFA 148
>gi|317142990|ref|XP_001819235.2| 21S rRNA (uridine(2791)-2'-O)-methyltransferase MRM2 [Aspergillus
oryzae RIB40]
Length = 283
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 59/212 (27%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F REA G +R+AFKL+QI +Y++ + G +V+DLG APG+W QVA GP
Sbjct: 40 DHFTREATAQGLKSRAAFKLIQIDAKYRIFRNGQTVVDLGYAPGSWSQVAVSRTGP---N 96
Query: 68 GSVVGIDVKKVKVP----SLHCDARVQTVSADVINLPSNQVR------ALSPK------- 110
G V+G+D+ + P ++ + ++ A V N N R +SP
Sbjct: 97 GRVLGVDIIPAQPPKGVFTIQGNFLDPSIQAYVQNFLHNPTRDQQHRPGISPHVSLSHET 156
Query: 111 ---------------------QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALG 149
++ V+LSDM + SG++ +D A S++L A+ +
Sbjct: 157 SEDTKNPIHNCKEMEELCLTGKRTVDVVLSDMMMNTSGMSFRDHAGSMDLCRAALQFSF- 215
Query: 150 PAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
VLK GGH V K +
Sbjct: 216 -----------------EVLKAGGHFVCKFYQ 230
>gi|402219812|gb|EJT99884.1| FtsJ-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 881
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 10/148 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYNFLESAKCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P+++ +VG+D+ +K +P RV T +AD+ + S K V+L D
Sbjct: 68 -PVNS--VIVGVDLVPIKAIP------RVITHAADITTPRCRTLLRESLKDWQADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 119 GAPNVGTAWVQDAYTQSELVLMSLKLAV 146
>gi|389691027|ref|ZP_10179920.1| 23S rRNA methylase [Microvirga sp. WSM3557]
gi|388589270|gb|EIM29559.1| 23S rRNA methylase [Microvirga sp. WSM3557]
Length = 232
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 35/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY +R+AFKL++I +YK++KPG ++DLG APG W Q+A + +GP
Sbjct: 36 DPYVARAKREGYRSRAAFKLIEIDDKYKILKPGQRIVDLGAAPGGWSQIAAKKVGP---K 92
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
G +VGID+ L D A V+ + D ++ P+ + L V++SDM
Sbjct: 93 GKIVGIDL-------LPIDPMAGVEFIELDFLDESAPARLIEMLGGPA---DVVMSDMAA 142
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ +G D +R + LA A +L PGG V K+ +
Sbjct: 143 NTTGHKKTDH-------LRIIGLAEAAIYFARE-----------ILAPGGAFVAKVFQ 182
>gi|381178935|ref|ZP_09887801.1| 23S rRNA Um-2552 2'-O-methyltransferase [Treponema saccharophilum
DSM 2985]
gi|380769154|gb|EIC03127.1| 23S rRNA Um-2552 2'-O-methyltransferase [Treponema saccharophilum
DSM 2985]
Length = 200
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 31/184 (16%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
PDF+ R+A GY ARS +KL +I +++ +IK G +VLDLG APG+W ++L L
Sbjct: 8 PDFWSRKAFSEGYPARSVYKLKEIDEKFGMIKKGYTVLDLGAAPGSWTVFLLRTLNSLGE 67
Query: 67 GGSVVGIDV----KKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
GG VV D+ K VK +L + D L N++ + F +++ D
Sbjct: 68 GGKVVSCDLNPLSKSVKAENLVF------IQGD---LGQNEIVERIKGEGPFDLVVCDAA 118
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P +G D A S L V +A+ A +L+PGG+ +K+ ++
Sbjct: 119 PLTTGNRVVDTARSQGL----VKMAIWYAQT--------------MLRPGGNFAVKIFQN 160
Query: 183 QDAQ 186
D Q
Sbjct: 161 GDQQ 164
>gi|240140172|ref|YP_002964649.1| ribosomal RNA large subunit methyltransferase J [Methylobacterium
extorquens AM1]
gi|254562611|ref|YP_003069706.1| ribosomal RNA large subunit methyltransferase J [Methylobacterium
extorquens DM4]
gi|418061826|ref|ZP_12699660.1| Ribosomal RNA large subunit methyltransferase E [Methylobacterium
extorquens DSM 13060]
gi|240010146|gb|ACS41372.1| Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) [Methylobacterium extorquens AM1]
gi|254269889|emb|CAX25867.1| Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) [Methylobacterium extorquens DM4]
gi|373564618|gb|EHP90713.1| Ribosomal RNA large subunit methyltransferase E [Methylobacterium
extorquens DSM 13060]
Length = 239
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 29/175 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY +R+AFKLL+I +++KL+KPG ++DLG APG W QVA + LG
Sbjct: 39 DPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIVDLGAAPGGWSQVAARILG---ES 95
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID+ +++ +P ++ D ++ PS R ++LSDM + +
Sbjct: 96 GRIVGIDLLEIEPMPG------ATFITLDFLD-PSAPERLTELLGGRADLVLSDMAANTT 148
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D +R + LA A A +L PGG + K+ +
Sbjct: 149 GHKKTDH-------LRIIGLAETAAVFARE-----------ILAPGGAYLAKVFQ 185
>gi|91976736|ref|YP_569395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisB5]
gi|123762792|sp|Q138J5.1|RLME_RHOPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|91683192|gb|ABE39494.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris BisB5]
Length = 235
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KLL+I +Y +K G +V DLG APG W Q+A + +G D
Sbjct: 33 DPYVAQAKRDGYRSRAAYKLLEIDDKYHFLKSGLAVADLGAAPGGWSQIAAKRVGAPDGR 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
G V+ ID+ ++ ++P V D ++ + +++R + G V++SDM +
Sbjct: 93 GKVIAIDLLEMGEIPG------VTFAQLDFLDDAAPDRLREMLG--GGADVVMSDMAANT 144
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+G D +R V L A AS VLKPGG V K+ +S
Sbjct: 145 TGHRKTDQ-------LRIVGLVESAAQFASE-----------VLKPGGTFVAKVFQS 183
>gi|46200783|ref|ZP_00207841.1| COG0293: 23S rRNA methylase [Magnetospirillum magnetotacticum MS-1]
Length = 247
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL--D 65
D + EA+RLG+ +R+AFKL+Q+ +++ ++KPG V+DLG APG W QVA +G L
Sbjct: 48 DPYVHEAKRLGFRSRAAFKLIQLDERFHILKPGLRVVDLGAAPGGWTQVAVDKVGALRPK 107
Query: 66 NGGSVVGIDVKKVKVPSLHCDAR--VQTVSADVI--NLPSNQVRALSPKQKGFSVILSDM 121
GG VVG+D+ L D T+ D + + P AL V+LSDM
Sbjct: 108 GGGKVVGMDI-------LEWDPLPGAITLQGDFLADDAPDRLKEALGGPA---DVVLSDM 157
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G + D + L A+ AL VL PGG V K+ +
Sbjct: 158 AAPTTGHPSTDHLRIIGLVEVALHFAL------------------EVLTPGGTFVAKVFQ 199
>gi|121602887|ref|YP_988636.1| ribosomal RNA large subunit methyltransferase J [Bartonella
bacilliformis KC583]
gi|421760445|ref|ZP_16197262.1| 23S rRNA methyltransferase J [Bartonella bacilliformis INS]
gi|143459401|sp|A1URN3.1|RLME_BARBK RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120615064|gb|ABM45665.1| ribosomal RNA large subunit methyltransferase J [Bartonella
bacilliformis KC583]
gi|411175729|gb|EKS45754.1| 23S rRNA methyltransferase J [Bartonella bacilliformis INS]
Length = 239
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK++K G ++DLG APG W QVA + + D
Sbjct: 45 DPYVHQSKADGYRSRAAYKLIEINERYKILKKGQKIIDLGAAPGGWCQVAARLVESKDYN 104
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
SVVGID LH + V + D + P + L K V+LSDM
Sbjct: 105 PSVVGIDY-------LHMEPLPGVAILEMDFFHEDAPQELISTLGSKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L AV ++ VLKPGGH + K +
Sbjct: 155 PTTGHRQTDHLRTIALCEAAVHFSI------------------SVLKPGGHFLTKTFQ 194
>gi|333375523|ref|ZP_08467331.1| ribosomal RNA large subunit methyltransferase J [Kingella kingae
ATCC 23330]
gi|332970372|gb|EGK09364.1| ribosomal RNA large subunit methyltransferase J [Kingella kingae
ATCC 23330]
Length = 213
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 34/183 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KLL+I ++ KLIK G+++ DLG APG+W Q+A + +G
Sbjct: 25 DPYVQRAQKDGYRARAAYKLLEINEKDKLIKNGTALADLGSAPGSWSQIAAKLVGK---E 81
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R ++V A NL N + +++ DM P
Sbjct: 82 GKVFALDILPMDALDGVDFIQGDFREESVLAQFENLLGN---------RPLDLVICDMAP 132
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D A S L A+D A LK GG+ ++K+ +
Sbjct: 133 NMSGNAVMDQARSFYLCELALDFA------------------QNHLKTGGNFLVKVFQGS 174
Query: 184 DAQ 186
Q
Sbjct: 175 GYQ 177
>gi|254804677|ref|YP_003082898.1| ribosomal RNA large subunit methyltransferase j [Neisseria
meningitidis alpha14]
gi|385854943|ref|YP_005901456.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240355]
gi|418288025|ref|ZP_12900548.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NM233]
gi|418290283|ref|ZP_12902450.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NM220]
gi|421542207|ref|ZP_15988317.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM255]
gi|421558645|ref|ZP_16004523.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 92045]
gi|254668219|emb|CBA04997.1| ribosomal RNA large subunit methyltransferase j [Neisseria
meningitidis alpha14]
gi|254671945|emb|CBA04325.1| cell division protein FtsJ [Neisseria meningitidis alpha275]
gi|325203884|gb|ADY99337.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis M01-240355]
gi|372201873|gb|EHP15748.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NM220]
gi|372202730|gb|EHP16504.1| ribosomal RNA large subunit methyltransferase J [Neisseria
meningitidis NM233]
gi|402318143|gb|EJU53668.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis NM255]
gi|402337388|gb|EJU72636.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 92045]
Length = 206
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I + KLIKPG+ + DLG APG+W QVA + G +
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---SS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|58263807|ref|XP_569180.1| RNA methyltransferase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108256|ref|XP_777079.1| hypothetical protein CNBB3110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819491|sp|P0CS79.1|SPB1_CRYNB RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
AltName: Full=2'-O-ribose RNA methyltransferase;
AltName: Full=S-adenosyl-L-methionine-dependent
methyltransferase
gi|338819492|sp|P0CS78.1|SPB1_CRYNJ RecName: Full=AdoMet-dependent rRNA methyltransferase SPB1;
AltName: Full=2'-O-ribose RNA methyltransferase;
AltName: Full=S-adenosyl-L-methionine-dependent
methyltransferase
gi|50259764|gb|EAL22432.1| hypothetical protein CNBB3110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223830|gb|AAW41873.1| RNA methyltransferase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 908
Score = 77.4 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 26/183 (14%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D FYR A+ GY ARSAFKL+ + ++Y L+ +DL APG WLQVA +
Sbjct: 8 TGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKY- 66
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ G ++G+D+ +K P H V T AD+ Q ++L D
Sbjct: 67 --MPKGSLIIGVDLNAIK-PLPH----VTTFVADITTPHCRQTLRQHMHDWKADLVLHDG 119
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 120 APNVGSAWVQDAFTQNELVLQSLKLA------------------TEFLAKGGSFVTKVFR 161
Query: 182 SQD 184
SQD
Sbjct: 162 SQD 164
>gi|194098119|ref|YP_002001167.1| putative cell division protein [Neisseria gonorrhoeae NCCP11945]
gi|254493296|ref|ZP_05106467.1| cell division protein FtsJ [Neisseria gonorrhoeae 1291]
gi|268594434|ref|ZP_06128601.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae 35/02]
gi|268596430|ref|ZP_06130597.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae FA19]
gi|268600914|ref|ZP_06135081.1| cell division protein [Neisseria gonorrhoeae PID18]
gi|268681701|ref|ZP_06148563.1| cell division protein FtsJ [Neisseria gonorrhoeae PID332]
gi|268683928|ref|ZP_06150790.1| cell division protein [Neisseria gonorrhoeae SK-92-679]
gi|268686171|ref|ZP_06153033.1| cell division protein [Neisseria gonorrhoeae SK-93-1035]
gi|291044276|ref|ZP_06569985.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae DGI2]
gi|385335306|ref|YP_005889253.1| putative cell division protein [Neisseria gonorrhoeae TCDC-NG08107]
gi|226703876|sp|B4RK82.1|RLME_NEIG2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|193933409|gb|ACF29233.1| putative cell division protein [Neisseria gonorrhoeae NCCP11945]
gi|226512336|gb|EEH61681.1| cell division protein FtsJ [Neisseria gonorrhoeae 1291]
gi|268547823|gb|EEZ43241.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae 35/02]
gi|268550218|gb|EEZ45237.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae FA19]
gi|268585045|gb|EEZ49721.1| cell division protein [Neisseria gonorrhoeae PID18]
gi|268621985|gb|EEZ54385.1| cell division protein FtsJ [Neisseria gonorrhoeae PID332]
gi|268624212|gb|EEZ56612.1| cell division protein [Neisseria gonorrhoeae SK-92-679]
gi|268626455|gb|EEZ58855.1| cell division protein [Neisseria gonorrhoeae SK-93-1035]
gi|291011170|gb|EFE03166.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae DGI2]
gi|317163849|gb|ADV07390.1| putative cell division protein [Neisseria gonorrhoeae TCDC-NG08107]
Length = 206
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ K+IKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKIIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GTVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|218531672|ref|YP_002422488.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
extorquens CM4]
gi|218523975|gb|ACK84560.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
extorquens CM4]
Length = 239
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 29/175 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY +R+AFKLL+I +++KL+KPG ++DLG APG W QVA + LG
Sbjct: 39 DPYVARAKREGYRSRAAFKLLEIDERFKLLKPGQRIVDLGAAPGGWSQVAARILG---ES 95
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID+ +++ +P ++ D ++ PS R ++LSDM + +
Sbjct: 96 GRIVGIDLLEIEPMPG------ATFITLDFLD-PSAPERLTELLGGRADLVLSDMAANTT 148
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D +R + LA A A +L PGG + K+ +
Sbjct: 149 GHKKTDH-------LRIIGLAETAAVFARE-----------ILAPGGAYLAKVFQ 185
>gi|47208174|emb|CAF94129.1| unnamed protein product [Tetraodon nigroviridis]
Length = 229
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 83/171 (48%), Gaps = 29/171 (16%)
Query: 22 RSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG-----PLDNGGSVVGIDVK 76
RSAFKLL++ ++ L++PG SV+D G APGAW QVA + + P G+V+GID+
Sbjct: 47 RSAFKLLEMDDRFHLLRPGYSVVDCGAAPGAWSQVAVRRVNSAGAEPESPIGTVIGIDL- 105
Query: 77 KVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-VILSDMCPSVSGITTKDAAL 135
+ +P L D S DV + P+ + L G + VILSDM P+ SG D
Sbjct: 106 -LNIPPL--DGAHFLSSHDVTD-PTTHAKILELLPSGQAHVILSDMAPNASGFKDMDHER 161
Query: 136 SVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
V + +DLA L+PGG LV K E AQ
Sbjct: 162 LVTMCFCLLDLA------------------EKTLRPGGSLVCKYWEGALAQ 194
>gi|410089674|ref|ZP_11286287.1| 23S rRNA methyltransferase J [Pseudomonas viridiflava UASWS0038]
gi|409763061|gb|EKN48049.1| 23S rRNA methyltransferase J [Pseudomonas viridiflava UASWS0038]
Length = 216
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ K+I+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|419795754|ref|ZP_14321335.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
VK64]
gi|385700117|gb|EIG30373.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
VK64]
Length = 206
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G N
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---NS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R V A L + +++ DM P
Sbjct: 75 GRVFALDILPMDEIEGVSFIQGDFREDEVLAQFETLLD---------ARPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A VN+ LK GG ++K+ +
Sbjct: 126 NMSGNAVTDQARSFYLCELALDFA---------VNH---------LKTGGSFLVKVFQ 165
>gi|421554562|ref|ZP_16000503.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 98008]
gi|402332522|gb|EJU67847.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 98008]
Length = 206
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I + KLIKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|402819494|ref|ZP_10869062.1| cell division protein ftsJ [alpha proteobacterium IMCC14465]
gi|402511641|gb|EJW21902.1| cell division protein ftsJ [alpha proteobacterium IMCC14465]
Length = 229
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 77/127 (60%), Gaps = 9/127 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ GY +R+A+KL++I +YKL+KPG V+DLGCAPG WLQVA + N
Sbjct: 34 DPYVAQAQQDGYRSRAAYKLIEIDDKYKLLKPGQCVVDLGCAPGGWLQVAVKRTRSDKNS 93
Query: 68 GS-VVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
G+ ++GID++ V + A + + D ++ + +++ L+ + ++LSDM +V
Sbjct: 94 GAYIIGIDIQDVDMI-----AGAEILKMDFMDDAAPDEICKLAGRAP--DLVLSDMAAAV 146
Query: 126 SGITTKD 132
+G D
Sbjct: 147 TGHKNTD 153
>gi|358449512|ref|ZP_09159996.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter
manganoxydans MnI7-9]
gi|357226267|gb|EHJ04748.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter
manganoxydans MnI7-9]
Length = 206
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ GY +R+++KLL+I K+ +LI P V+DLG APG W QVA + +G +
Sbjct: 17 DPFVKQAQVDGYRSRASYKLLEINKKDRLIHPNMVVVDLGSAPGGWSQVAAKLVG---HK 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D+ +P + A V + D + + V++SDM P++SG
Sbjct: 74 GRVIASDI----LP-MDAIAGVDFIQGDFTENDVFESIMATLGGDPVDVVISDMAPNISG 128
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+T D A S+ L A+D+A S VLKP G + K+ + +
Sbjct: 129 VTVADQAASMYLVELALDMA------------------SQVLKPKGSFLAKVFQGE 166
>gi|383317099|ref|YP_005377941.1| 23S rRNA methylase [Frateuria aurantia DSM 6220]
gi|379044203|gb|AFC86259.1| 23S rRNA methylase [Frateuria aurantia DSM 6220]
Length = 228
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 38/180 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ FKL ++ ++ +L+KPG ++DLG APG W Q+ Q LG DN
Sbjct: 29 DVYVKKAQAEGYRSRAVFKLDELIERDRLLKPGMRIVDLGAAPGGWSQLVRQRLG--DN- 85
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG--FSVILSDM 121
G+VV +D+ ++ V + D R V + AL + G ++LSDM
Sbjct: 86 GTVVALDILPMQGLAGVDFIQGDFREPEV-----------LSALEAQLNGQKLDLVLSDM 134
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P++SG+ D +RA+DL A LA + LKPGG L+IKL +
Sbjct: 135 APNMSGVALADQ-------IRAMDL----AELALQFSQD-------WLKPGGSLLIKLFQ 176
>gi|430376388|ref|ZP_19430791.1| 23S rRNA methyltransferase J [Moraxella macacae 0408225]
gi|429541619|gb|ELA09647.1| 23S rRNA methyltransferase J [Moraxella macacae 0408225]
Length = 229
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A R GY AR+A+KLL+I + +LIK G +V+DLG APG+W QVA + +G
Sbjct: 43 DHYVKLAHRDGYRARAAYKLLEINDKLQLIKKGMTVVDLGSAPGSWSQVAGKIVG---ES 99
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V + D R Q + ++ + K +++LSDM P
Sbjct: 100 GKLIASDILPMDTLENVTFIQGDFRKQEIFDKIMTEVAG---------KKVNIVLSDMAP 150
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SG D + L AVD A S VL GG L++K+ + +
Sbjct: 151 NTSGFAAVDQPRMIYLCELAVDFA------------------SQVLDEGGSLIVKVFQGE 192
>gi|300691218|ref|YP_003752213.1| 23S rRNA methyltransferase [Ralstonia solanacearum PSI07]
gi|299078278|emb|CBJ50926.1| 23S rRNA methyltransferase [Ralstonia solanacearum PSI07]
Length = 221
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 43/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLADSPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R + V Q+ + G
Sbjct: 77 KDGRID--GAIVAIDILPMEPVSDVTFIQGDFREEAV--------YQQLEKIVLDTTGGG 126
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ AL LKP
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFALAH------------------LKPE 168
Query: 173 GHLVIK 178
G L+IK
Sbjct: 169 GALLIK 174
>gi|357417784|ref|YP_004930804.1| cell division protein FtsJ [Pseudoxanthomonas spadix BD-a59]
gi|355335362|gb|AER56763.1| cell division protein FtsJ [Pseudoxanthomonas spadix BD-a59]
Length = 210
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 38/180 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ G +R+A+KL ++ ++ +L+KPG V+DLG APG W Q Q++G
Sbjct: 18 DPYVKRAQAEGLRSRAAYKLEELIERDRLLKPGMVVVDLGAAPGGWSQYVRQAMG---GQ 74
Query: 68 GSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G VV +D+ +++PS LH D R Q V + + + L +Q ++LSDM
Sbjct: 75 GRVVAMDI--LEMPSLAGVDFLHGDFREQVVLSRLEAM-------LEGRQA--DLVLSDM 123
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+ SG+ D + L A+D A G LKPGG +IKL +
Sbjct: 124 APNKSGVDAVDQPRMMHLAELAIDFA------------------DGHLKPGGAFLIKLFQ 165
>gi|404400427|ref|ZP_10992011.1| 23S rRNA methyltransferase J [Pseudomonas fuscovaginae UPB0736]
Length = 209
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DPFVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVVDLGAAPGGWSQVTSRLIG---GK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V + D V A ++ N +++SDM P
Sbjct: 74 GRLIASDILDMDSIPDVTFIKGDFTEDAVLAQILEAVGNSE---------VDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D S+ L A+DLA VL+PGG +IK+ + +
Sbjct: 125 NMSGTPAVDMPRSMFLCELALDLA------------------GRVLRPGGDFLIKIFQGE 166
>gi|414162942|ref|ZP_11419189.1| ribosomal RNA large subunit methyltransferase E [Afipia felis ATCC
53690]
gi|410880722|gb|EKS28562.1| ribosomal RNA large subunit methyltransferase E [Afipia felis ATCC
53690]
Length = 228
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+AFKLL++ +Y+ +K G +V+DLG APG W Q+A + +G
Sbjct: 33 DPYVAQAKREGYRSRAAFKLLEMDDKYRFLKQGQAVVDLGAAPGGWSQIAAKRVGAEAGK 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ ID+ ++ ++P + A++ ++ D ++RA+ G +++SDM + +
Sbjct: 93 GKVIAIDLLEMGEIPGVAF-AQLDFLADDA----PEKLRAMLG--GGADIVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L AA A+ VL PGG + K+ +S
Sbjct: 146 GHRKTDQ-------LRIVGLVESAAAFAAE-----------VLNPGGVFLAKVFQS 183
>gi|75676335|ref|YP_318756.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrobacter winogradskyi
Nb-255]
gi|83305662|sp|Q3SQN7.1|RLME_NITWN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|74421205|gb|ABA05404.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrobacter winogradskyi
Nb-255]
Length = 230
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 24/175 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R G+ +R++FKL+++ +++ +KPG +V+DLG APG W QVA + +G +
Sbjct: 33 DPYVAQAKRDGWRSRASFKLIEMDDKHRFLKPGMTVVDLGAAPGGWSQVAAKRVGAAEGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ ID+ +++P + V D ++ S + L+ V+LSDM + +G
Sbjct: 93 GRVIAIDL--LEMPEI---VGVTFARLDFLD-DSAPDKLLAMMDGAADVVLSDMAANTTG 146
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
D +R V L AA S VL+PGG + K+ +S
Sbjct: 147 HRKTDQ-------LRIVGLVESAAAFTSD-----------VLRPGGTFIAKVFQS 183
>gi|395334612|gb|EJF66988.1| hypothetical protein DICSQDRAFT_131257 [Dichomitus squalens
LYAD-421 SS1]
Length = 893
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 10/147 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYSFLESARCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
PL++ +VG+D+ +K +P RV T +AD+ + K V+L D
Sbjct: 68 -PLNS--VIVGVDLVPIKPIP------RVVTFAADITTTNCRNLIRNELKDWKADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLA 147
P+V +DA EL + ++ LA
Sbjct: 119 GAPNVGTAWVQDAYSQSELVLMSLKLA 145
>gi|392309696|ref|ZP_10272230.1| 23S rRNA methyltransferase J [Pseudoalteromonas citrea NCIMB 1889]
Length = 209
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 16/143 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL +IQ++ KLIKPG SV+DLG APG+W Q + +G
Sbjct: 20 DPYVQEAQKRGFRSRAVFKLEEIQQRDKLIKPGMSVVDLGAAPGSWSQYLAEQVG---TK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N K V+ SDM P
Sbjct: 77 GQVIACDILPMDSLAGVDFLQGDFREEAVLDALLNRIEG---------KNVDVVFSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDL 146
++SG + D A S+ L A+D+
Sbjct: 128 NMSGNMSTDQAGSMYLVELALDM 150
>gi|383853926|ref|XP_003702473.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
[Megachile rotundata]
Length = 251
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 8/145 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ--SLGPLD 65
D + +A++ Y RSAFKLL+I +++K++KPG V+D G APG+W QVA + + ++
Sbjct: 45 DPYVEKAKKENYRCRSAFKLLEINERFKILKPGQIVIDCGAAPGSWTQVAIKLTNANGVN 104
Query: 66 NG--GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
N G+V+GID K+P + + D S + K + V+LSDM P
Sbjct: 105 NEAVGTVIGID----KIPMYPIEGATLLGNMDFTTEASQKELLKLLKDRKADVVLSDMAP 160
Query: 124 SVSGITTKDAALSVELGMRAVDLAL 148
+ SG+ D ++L A AL
Sbjct: 161 NASGVRDIDHVNIIKLAYLAFKFAL 185
>gi|291613528|ref|YP_003523685.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sideroxydans
lithotrophicus ES-1]
gi|291583640|gb|ADE11298.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Sideroxydans
lithotrophicus ES-1]
Length = 206
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+A+KLL+I ++ LIKPG V+DLG PG W QV LG
Sbjct: 17 DPYVQQAQKDGYRSRAAYKLLEIDERDHLIKPGMVVVDLGATPGGWCQVVANRLGA---N 73
Query: 68 GSVVG----IDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ +V + D R +V A + L +Q G +++SDM P
Sbjct: 74 GRIIALDLLPLNPLPRVEFIQGDFREDSVLAQLEE-------KLEGRQIG--LVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG+++ D A ++ L A+D A+ L PGG ++K+ +
Sbjct: 125 NISGVSSADQARAMHLAELALDFAVEH------------------LAPGGSFLVKVFQ 164
>gi|347734451|ref|ZP_08867496.1| ftsJ-like methyltransferase family protein [Desulfovibrio sp. A2]
gi|347516777|gb|EGY23977.1| ftsJ-like methyltransferase family protein [Desulfovibrio sp. A2]
Length = 201
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 13/143 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A++ Y ARS +KL +I ++KL +PG VLDLG APG+W A + +GP
Sbjct: 6 DHYFLKAKQENYPARSIYKLKEIDNRFKLFRPGMKVLDLGAAPGSWSLGAAERVGP---K 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLP---SNQVRALSPKQKGFSVILSDMCPS 124
G V+ D++ V + DV N + + A+ P F V++SDM P
Sbjct: 63 GRVLACDLQATDT---QFPPNVTFMQEDVFNRSEAFEDALAAMGP----FHVVISDMAPR 115
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
+G D A S+EL + A+ +A
Sbjct: 116 TTGTRFTDQARSLELCIEALAVA 138
>gi|118097774|ref|XP_414772.2| PREDICTED: putative ribosomal RNA methyltransferase 2 [Gallus
gallus]
Length = 244
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A++ Y RSAFKLL+I + +++PG SVLD G APGAW QVA + + L
Sbjct: 45 DPFVKAAKQQHYRCRSAFKLLEIDDKLHILRPGLSVLDCGAAPGAWSQVAVERVNALGTD 104
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSD 120
G V+G+D+ ++ + V AD+ + P Q ++ L P +K VILSD
Sbjct: 105 PAAPTGFVIGVDLLRISP----LEGAVFLSQADITD-PGTQRAIQNLLPAEK-VDVILSD 158
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+ +GI D + + L LG VN S S +LKP G ++ K
Sbjct: 159 MAPNATGIKELD-------HQKLISLCLG------LVNLSQS-----ILKPKGTMLCKFW 200
Query: 181 ESQDAQ 186
+ +++
Sbjct: 201 DGHESR 206
>gi|268323180|emb|CBH36768.1| putative ribosomal RNA large subunit methyltransferase J
[uncultured archaeon]
Length = 204
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 32/179 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY+ A+ LGY +RSAFKLLQI ++ LI+ G VLDLG APG W QVA G + +
Sbjct: 10 DRFYKSAKELGYRSRSAFKLLQINTKFGLIRAGDVVLDLGAAPGGWSQVA---YGLVGDS 66
Query: 68 GSVVGIDVKKVK----VPSLHCD-ARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
G V+ +D++ ++ + L D A+ Q A + + + + L ++SD+
Sbjct: 67 GLVLSVDLQPMENIADIVILKRDIAKEQETLAAIKAVLNRKGHEL------VDAVISDLS 120
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P +SG D S EL A+++A S +L+ G+ V K+ +
Sbjct: 121 PQLSGTRDYDQFRSSELSTSALNIA------------------SALLRNNGNFVAKIFQ 161
>gi|288575930|ref|ZP_05977888.2| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
ATCC 25996]
gi|288566590|gb|EFC88150.1| ribosomal RNA large subunit methyltransferase J [Neisseria mucosa
ATCC 25996]
Length = 184
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 34/172 (19%)
Query: 14 AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGI 73
AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G N G V +
Sbjct: 2 AQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---NSGRVFAL 58
Query: 74 DVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGIT 129
D+ + V + D R V A L + + +++ DM P++SG
Sbjct: 59 DILPMDEIEGVSFIQGDFRENDVLAQFETLLDD---------RPLDLVICDMAPNMSGNA 109
Query: 130 TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D A S L A+D A VN+ LK GG ++K+ +
Sbjct: 110 VTDQARSFYLCELALDFA---------VNH---------LKTGGSFLVKVFQ 143
>gi|341889611|gb|EGT45546.1| hypothetical protein CAEBREN_04616 [Caenorhabditis brenneri]
Length = 231
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
+ D F A+ + ARSAFKL++I +++K +KP S+V+D+GCAPG+WLQV
Sbjct: 36 STDEFTVRAREHNFRARSAFKLMEIDEKFKFLKPESTVIDIGCAPGSWLQVVVDRCP--- 92
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCP 123
G V+G+D++ V +P D +S I P Q +R K+ V+LSDM P
Sbjct: 93 -NGYVMGVDLQNV-LPIRGAD----ILSLSDITSPEVQSKIREKLAKRGSVDVVLSDMAP 146
Query: 124 SVSGITTKDAALSVEL 139
+ +G D +EL
Sbjct: 147 NPTGDNATDHLRLIEL 162
>gi|344174448|emb|CCA86242.1| 23S rRNA methyltransferase [Ralstonia syzygii R24]
Length = 221
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 43/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLADSPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R + V Q+ + G
Sbjct: 77 KDGRID--GAIVAIDILPMEPVSDVTFIQGDFREEAV--------FQQLEKIVLDTTGGG 126
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ AL LKP
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFALAH------------------LKPE 168
Query: 173 GHLVIK 178
G L+IK
Sbjct: 169 GALLIK 174
>gi|409396347|ref|ZP_11247350.1| 23S rRNA methyltransferase J [Pseudomonas sp. Chol1]
gi|409119124|gb|EKM95511.1| 23S rRNA methyltransferase J [Pseudomonas sp. Chol1]
Length = 210
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 92/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V + D V A ++ + + +++SDM P
Sbjct: 74 GRLIASDILPMDSIADVTFIQGDFTEDEVFAQILE---------AIGEHPVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA + VL+PGG +IK+ + +
Sbjct: 125 NMSGVRASDQPRAMFLCELALDLA------------------TRVLRPGGDFLIKIFQGE 166
>gi|308464733|ref|XP_003094631.1| hypothetical protein CRE_31467 [Caenorhabditis remanei]
gi|308247098|gb|EFO91050.1| hypothetical protein CRE_31467 [Caenorhabditis remanei]
Length = 227
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 10/135 (7%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
+ D F +A+ Y ARSAFKL++I +++K +KP S+V+D+GCAPG+W+QV +
Sbjct: 33 SSDEFAVKAREHNYRARSAFKLMEIDEKFKFLKPESTVIDIGCAPGSWIQVVVEKCP--- 89
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQT-VSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
G V+G+D++ V +P + Q+ V++ ++L + K + V+LSDM P+
Sbjct: 90 -NGYVLGVDLQNV-LPIRGAEILSQSDVTSPEVHLKIRE----KLKNRQLDVVLSDMAPN 143
Query: 125 VSGITTKDAALSVEL 139
+G D +EL
Sbjct: 144 PTGDNATDHLRLIEL 158
>gi|156058214|ref|XP_001595030.1| hypothetical protein SS1G_03118 [Sclerotinia sclerotiorum 1980]
gi|154700906|gb|EDO00645.1| hypothetical protein SS1G_03118 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 347
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +++
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAETM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 67 PV--SSLIVGVDLSPIKPIP------RVITFQSDITTEKCRATIRTHFKSWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +D+ EL ++++ LA + L PGG V K+
Sbjct: 119 APNVGTAWVQDSFNQAELALQSLKLA------------------TEFLAPGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|294669674|ref|ZP_06734741.1| hypothetical protein NEIELOOT_01575 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308587|gb|EFE49830.1| hypothetical protein NEIELOOT_01575 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 248
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ GY AR+A+KLL+I ++ +LI+PG+ + DLG APG+W QVA + G
Sbjct: 60 DHYVHQAQKDGYRARAAYKLLEINEKDRLIQPGTVLADLGSAPGSWSQVAAELAG---EK 116
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A +L +++ +++ DM P
Sbjct: 117 GAVFALDILPMEPIAGVSFIQGDFREDEVLAQFESLLGDRL---------LDLVICDMAP 167
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S+ L A+D A LK GH ++K+ +
Sbjct: 168 NMSGHAVTDQAKSLYLCKLALDFA------------------RNHLKTNGHFLVKVFQ 207
>gi|393795309|ref|ZP_10378673.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 197
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 12/132 (9%)
Query: 11 YRE-AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS 69
YR+ A GY +R+A+KL Q+ Y++I PG VLDLGCAPG W Q+A + +G N G
Sbjct: 11 YRKLAHEQGYRSRAAYKLKQLNHSYRIIGPGFYVLDLGCAPGGWTQMAVKLVG---NKGK 67
Query: 70 VVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI 128
VVG+D V ++P H R + +++ LS ++ + ++ D+ P V+G
Sbjct: 68 VVGVDTSYVEEIPGAHI-IRENIENEFLVD------ELLSYFERKVNAVICDLSPQVTGN 120
Query: 129 TTKDAALSVELG 140
+ D A+ + L
Sbjct: 121 WSVDHAIQISLN 132
>gi|84489178|ref|YP_447410.1| 23S rRNA methylase [Methanosphaera stadtmanae DSM 3091]
gi|121697907|sp|Q2NHD6.1|RLME_METST RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|84372497|gb|ABC56767.1| putative 23S rRNA methylase [Methanosphaera stadtmanae DSM 3091]
Length = 206
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 35/185 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
+ +Y+ A++ Y +R+++KL Q+ K+Y L+KP +V+DLG APG W QV +++G +
Sbjct: 11 EHYYKLAKKQNYRSRASYKLKQLDKKYSLLKPDYNVVDLGAAPGGWSQVVAETIGE-EGK 69
Query: 68 GSVVGIDVKKVK------VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G ++ +D++ +K + D + +I L + V+LSD
Sbjct: 70 GQIISVDLEYIKPIDHEAYTGVKGDFTTKETQDIIIELIDGKA----------DVVLSDA 119
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P ++GI D RA DL++ A+ ++N +LK G+L++K +
Sbjct: 120 APKLTGIKDID-------NFRAYDLSM---AVIEIIDN--------ILKNNGNLIMKAFQ 161
Query: 182 SQDAQ 186
+ Q
Sbjct: 162 GEAYQ 166
>gi|329766421|ref|ZP_08257965.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137020|gb|EGG41312.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 197
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 12/132 (9%)
Query: 11 YRE-AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS 69
YR+ A GY +R+A+KL Q+ Y++I PG VLDLGCAPG W Q+A + +G N G
Sbjct: 11 YRKLAHEQGYRSRAAYKLKQLNHSYRIIGPGFYVLDLGCAPGGWTQMAVKLVG---NKGK 67
Query: 70 VVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI 128
VVG+D V ++P H R + +++ LS ++ + ++ D+ P V+G
Sbjct: 68 VVGVDTSYVEEIPGAHI-IRENIENEFLVD------ELLSYFERKVNAVICDLSPQVTGN 120
Query: 129 TTKDAALSVELG 140
+ D A+ + L
Sbjct: 121 WSVDHAIQISLN 132
>gi|296391579|ref|ZP_06881054.1| cell division protein FtsJ [Pseudomonas aeruginosa PAb1]
gi|416873714|ref|ZP_11917689.1| cell division protein FtsJ [Pseudomonas aeruginosa 152504]
gi|334844404|gb|EGM22979.1| cell division protein FtsJ [Pseudomonas aeruginosa 152504]
Length = 207
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DR 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V A ++ + +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDH---------PVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 125 NMSGVRAADQPRAMYLCELALDLA------------------RRVLRPGGDFLIKIFQGE 166
>gi|225629924|ref|YP_002726715.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia sp. wRi]
gi|225591905|gb|ACN94924.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia sp. wRi]
Length = 192
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 31/176 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++ + GY +RSA+KL+++ ++KL + G ++DLG +PG WLQVA Q G
Sbjct: 3 DQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWLQVASQK------G 56
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VV +DVK + + V+ + D+IN ++ K + F VILSDM P G
Sbjct: 57 ANVVALDVKPMNAIN-----GVEFIQCDIIN--EFEILREKFKDQKFDVILSDMAPESCG 109
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ + D + L A++ A L GG V+K+ + +
Sbjct: 110 LKSLDHIRIMLLCEAALNFA------------------KHFLSHGGTFVVKIFQGE 147
>gi|406967920|gb|EKD92894.1| FtsJ-like protein methyltransferase [uncultured bacterium]
Length = 197
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 30/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A+ ARSAFKL +IQ+++KL+KPG ++ DLG APG+W Q L
Sbjct: 9 DIYFQKAKEEDLRARSAFKLDEIQQKFKLVKPGQTLADLGAAPGSW----SQRLSQWVKS 64
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ +D++ ++ + A V+ D+ + P+ + K +G +++D+ P +G
Sbjct: 65 GKVIAMDLQAMEAIA----ANVELHQGDMFD-PAFLNKIFIQKVEG---VVADLAPKTTG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
I DA S EL +D LKPGG+++ K+ + ++
Sbjct: 117 IPDADAFHSAELNETVLDFC------------------GDHLKPGGYVITKIFQGEE 155
>gi|389759495|ref|ZP_10191780.1| 23S rRNA methyltransferase J [Rhodanobacter sp. 115]
gi|388430422|gb|EIL87594.1| 23S rRNA methyltransferase J [Rhodanobacter sp. 115]
Length = 216
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ G +R+ FKL ++ ++ +L+KPG V+DLG APG W Q+ Q LG +
Sbjct: 17 DVYVKKAQADGLRSRAVFKLEELIERDRLLKPGMRVVDLGAAPGGWSQLVRQRLG---DT 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+VV +D+ ++ V L D R ++V +++ A QK ++LSDM P
Sbjct: 74 GTVVALDILPMQGIGGVDFLQGDFREESV--------LHELEARLDGQK-LDLVLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG+ D +++L A+D + LKPGG +IKL +
Sbjct: 125 NMSGVALADQIRAMDLAELALDFS------------------RHWLKPGGAFLIKLFQ 164
>gi|408373089|ref|ZP_11170787.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
hongdengensis A-11-3]
gi|407766927|gb|EKF75366.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
hongdengensis A-11-3]
Length = 208
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 34/175 (19%)
Query: 13 EAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVG 72
+AQ GY +R+++KLL++ ++ KL++PG SVLDLG APG W QVA Q +G + G+VV
Sbjct: 25 KAQAEGYRSRASYKLLEMHEKDKLLRPGMSVLDLGAAPGGWSQVAGQLVG---SRGTVVA 81
Query: 73 IDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI 128
D+ + V + D R V ++ AL ++ +++SDM P++SG
Sbjct: 82 SDILAMDALPDVTFILGDFREDAVYEQILA-------ALGDRR--VDLVMSDMAPNMSGN 132
Query: 129 TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
D ++ L A+D+A VL+P GH ++K+ + +
Sbjct: 133 NAVDLPRAMYLAELALDMA------------------ERVLEPDGHFLVKVFQGE 169
>gi|107103849|ref|ZP_01367767.1| hypothetical protein PaerPA_01004920 [Pseudomonas aeruginosa PACS2]
Length = 207
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DH 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V A ++ + +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDH---------PVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 125 NMSGVRAADQPRAMYLCELALDLA------------------GRVLRPGGDFLIKIFQGE 166
>gi|365096706|ref|ZP_09331149.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax sp. NO-1]
gi|363413732|gb|EHL20924.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax sp. NO-1]
Length = 220
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 85/183 (46%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I +Q LIKPG +V+DLG PGAW Q + + P
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGYTVVDLGSTPGAWSQYLRRRMSPAGAA 80
Query: 68 -----GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
G ++ +D+ ++ V ++ D R V + +V V++
Sbjct: 81 SGQLNGVIIALDILPMEPIEGVTYINGDFREPEVLEHLEQALEGRV---------VDVVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SGI + DAA L AVD A LKP G LV+K
Sbjct: 132 SDMAPNLSGIESADAARIAHLVELAVDFACNH------------------LKPDGALVVK 173
Query: 179 LLE 181
L
Sbjct: 174 LFH 176
>gi|261217293|ref|ZP_05931574.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M13/05/1]
gi|261320164|ref|ZP_05959361.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M644/93/1]
gi|260922382|gb|EEX88950.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M13/05/1]
gi|261292854|gb|EEX96350.1| ribosomal RNA large subunit methyltransferase J [Brucella ceti
M644/93/1]
Length = 240
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+A+KL++I +Y L+K G ++DLG APG W Q+A + +G D
Sbjct: 49 DPYVHKSRQDGYRSRAAYKLIEINDRYNLLKKGQKIIDLGAAPGGWSQIAARIVGSTDEN 108
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
VVGID LH D V + D ++ P + AL K +++SDM
Sbjct: 109 PQVVGIDY-------LHVDPLPGVILLEMDFLDDEAPQKLMDALGDKP---DLVISDMAA 158
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +V + D A+ VLKPGGH + K +
Sbjct: 159 PTTGHRRTDHLRTVHVCEVVADFAV------------------SVLKPGGHFLTKTFQ 198
>gi|82701616|ref|YP_411182.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Nitrosospira multiformis
ATCC 25196]
gi|123545045|sp|Q2YBT1.1|RLME_NITMU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|82409681|gb|ABB73790.1| 23S rRNA Um-2552 2'-O-methyltransferase [Nitrosospira multiformis
ATCC 25196]
Length = 206
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 79/145 (54%), Gaps = 20/145 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DFF R+A++ GY +R+A+KL++I ++ L KPG +V+DLG APG W QVA + L
Sbjct: 17 DFFVRQAKKEGYRSRAAYKLMEIAERDHLFKPGMTVVDLGAAPGGWSQVAAEK---LKGK 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ ++ V + D R +V A++ Q++ L +++ DM P
Sbjct: 74 GRAVALDILEMAPISGVTFIQGDFREASVLAEL----KEQLKDLP-----VDLVICDMSP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLAL 148
+++GI D GM +LAL
Sbjct: 125 NITGIRVIDQT----RGMHLAELAL 145
>gi|296534248|ref|ZP_06896731.1| ribosomal RNA large subunit methyltransferase J [Roseomonas
cervicalis ATCC 49957]
gi|296265422|gb|EFH11564.1| ribosomal RNA large subunit methyltransferase J [Roseomonas
cervicalis ATCC 49957]
Length = 228
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 41/181 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A+ G+ +R+AFKL+++ ++YKL+KPG ++DLG APG W QVA Q G +
Sbjct: 35 DPYVRAAKAAGWRSRAAFKLIELDEKYKLLKPGQRIVDLGAAPGGWTQVAVQRAG---DR 91
Query: 68 GSVVGIDVKKVKVPS----LHCDARVQTVSA---DVINLPSNQVRALSPKQKGFSVILSD 120
G VVG+D+ + V + L D + + V D ++ P++ +++SD
Sbjct: 92 GKVVGLDLLPMDVIAGATLLQGDFQDEAVEQAVLDALDGPAD-------------LVMSD 138
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+ +G D L + LG+ V+LAL A VL PGG + K+
Sbjct: 139 MAPNTTGHNATD-HLRI-LGL--VELALDFA--------------DKVLVPGGAFIAKVF 180
Query: 181 E 181
+
Sbjct: 181 Q 181
>gi|397170787|ref|ZP_10494197.1| 23S rRNA methyltransferase J [Alishewanella aestuarii B11]
gi|396087261|gb|EJI84861.1| 23S rRNA methyltransferase J [Alishewanella aestuarii B11]
Length = 209
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+LG +R++FKL +IQ+Q KLI+ G +V+DLG APG+W Q G +
Sbjct: 20 DHFVQKAQKLGLRSRASFKLEEIQQQDKLIRSGMTVVDLGSAPGSWSQYVA---GLVGQQ 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V+ D+ + V L D R + V +++ K V+LSDM P
Sbjct: 77 GTVIACDILPMDPLAGVAFLQGDFREEAVLHALLSRIGG---------KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG T D A S+ L A+D+ VLK G V+K+ +
Sbjct: 128 NMSGNDTTDQARSIYLVELALDMC------------------HKVLKQNGSFVVKVFQ 167
>gi|387812794|ref|YP_005428271.1| 23S rRNA methyltransferase [Marinobacter hydrocarbonoclasticus ATCC
49840]
gi|381337801|emb|CCG93848.1| 23 S rRNA methyltransferase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 213
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 91/177 (51%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+++KLL+I + +LIKP V+DLG APG W QVA + +G +
Sbjct: 23 DPFVKQAQQDGYRSRASYKLLEINNKDRLIKPTDLVVDLGSAPGGWSQVAAKLVG---HK 79
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVS 126
G VV D+ +P + A V+ + D +Q+ A+ + +VI SDM P++S
Sbjct: 80 GRVVASDI----LP-MDPIAGVEFIQGDFTEQEVFDQIMAILDGARADAVI-SDMAPNIS 133
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G+ D A S+ L A+D+A VLKP G V K+ +
Sbjct: 134 GVNAADQAASMYLVELALDMA------------------CQVLKPKGSFVAKVFHGE 172
>gi|381401050|ref|ZP_09925968.1| cell division protein [Kingella kingae PYKK081]
gi|380833975|gb|EIC13825.1| cell division protein [Kingella kingae PYKK081]
Length = 206
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 88/183 (48%), Gaps = 34/183 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KLL+I ++ KLIK G+ + DLG APG+W Q+A + +G
Sbjct: 18 DPYVQRAQKDGYRARAAYKLLEINEKDKLIKNGTVLADLGSAPGSWSQIAAKLVG---KE 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R ++V A NL N + +++ DM P
Sbjct: 75 GKVFALDILPMDALDGVDFIQGDFREESVLAQFENLLGN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D A S L A+D A LK GG+ ++K+ +
Sbjct: 126 NMSGSAVMDQARSFYLCELALDFA------------------QNHLKTGGNFLVKVFQGS 167
Query: 184 DAQ 186
Q
Sbjct: 168 GYQ 170
>gi|340345420|ref|ZP_08668552.1| Ribosomal RNA large subunit methyltransferase E [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520561|gb|EGP94284.1| Ribosomal RNA large subunit methyltransferase E [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 197
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 12/138 (8%)
Query: 11 YRE-AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS 69
YR+ A GY +R+A+KL Q+ + Y++I PG VLDLGCAPG W Q+A + G N G
Sbjct: 11 YRKLAHEQGYRSRAAYKLKQLNQSYRIIGPGFYVLDLGCAPGGWTQMAVKLAG---NKGK 67
Query: 70 VVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI 128
V+GID V ++P H R + V++ +S ++ + ++ D+ P V+G
Sbjct: 68 VMGIDTSYVEEIPGAHI-IRENIENEFVVD------EIMSYFERKVNAVICDLSPQVTGN 120
Query: 129 TTKDAALSVELGMRAVDL 146
+ D A+ + L +
Sbjct: 121 WSVDHAIQISLNYECTKI 138
>gi|254238512|ref|ZP_04931835.1| cell division protein FtsJ [Pseudomonas aeruginosa C3719]
gi|254244346|ref|ZP_04937668.1| cell division protein FtsJ [Pseudomonas aeruginosa 2192]
gi|392986424|ref|YP_006485011.1| cell division protein FtsJ [Pseudomonas aeruginosa DK2]
gi|419751526|ref|ZP_14277937.1| cell division protein FtsJ [Pseudomonas aeruginosa PADK2_CF510]
gi|420141946|ref|ZP_14649580.1| cell division protein FtsJ [Pseudomonas aeruginosa CIG1]
gi|421163336|ref|ZP_15622057.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 25324]
gi|451988348|ref|ZP_21936482.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudomonas aeruginosa 18A]
gi|126170443|gb|EAZ55954.1| cell division protein FtsJ [Pseudomonas aeruginosa C3719]
gi|126197724|gb|EAZ61787.1| cell division protein FtsJ [Pseudomonas aeruginosa 2192]
gi|384401988|gb|EIE48340.1| cell division protein FtsJ [Pseudomonas aeruginosa PADK2_CF510]
gi|392321929|gb|AFM67309.1| cell division protein FtsJ [Pseudomonas aeruginosa DK2]
gi|403245253|gb|EJY59075.1| cell division protein FtsJ [Pseudomonas aeruginosa CIG1]
gi|404529147|gb|EKA39198.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 25324]
gi|451754001|emb|CCQ89005.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudomonas aeruginosa 18A]
Length = 207
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DR 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V A ++ + +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDH---------PVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 125 NMSGVRASDQPRAMYLCELALDLA------------------GRVLRPGGDFLIKIFQGE 166
>gi|415906148|ref|ZP_11552666.1| Ribosomal RNA large subunit methyltransferase J [Herbaspirillum
frisingense GSF30]
gi|407763178|gb|EKF71884.1| Ribosomal RNA large subunit methyltransferase J [Herbaspirillum
frisingense GSF30]
Length = 205
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 88/174 (50%), Gaps = 26/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I ++ +LIKPG ++DLGC PG+W Q L G
Sbjct: 7 DPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPGSWCQYVRNKLA----G 62
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPS 124
GI + + L D A V + D + P Q+ AL +K ++LSDM P+
Sbjct: 63 AEGGGIHGTIIGLDILPMDPIADVHYIQGDFREDEPVRQLEALLDGRK-VDLVLSDMAPN 121
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
+SG+ DAA L +DLA+ A L +KPGG L++K
Sbjct: 122 LSGVAIADAARVEYL----IDLAIEFAQLH--------------MKPGGSLLVK 157
>gi|152985989|ref|YP_001350794.1| cell division protein FtsJ [Pseudomonas aeruginosa PA7]
gi|452876023|ref|ZP_21953391.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa VRFPA01]
gi|189040320|sp|A6VCK9.1|RLME_PSEA7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|150961147|gb|ABR83172.1| cell division protein FtsJ [Pseudomonas aeruginosa PA7]
gi|452187146|gb|EME14164.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa VRFPA01]
Length = 207
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 92/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DR 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V A ++ + + +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVFARILE---------AIGEHPVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 125 NMSGVRAADQPRAMYLCELALDLA------------------GRVLRPGGDFLIKIFQGE 166
>gi|198424725|ref|XP_002124852.1| PREDICTED: similar to cell division protein ftsj [Ciona
intestinalis]
Length = 273
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 6/143 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + GY RSA+KL+ I +++ L+KPG V+DLG APG+W QVA + + D+
Sbjct: 73 DPFVKMRHLEGYRCRSAYKLMDIVEKHDLLKPGMKVVDLGAAPGSWSQVAAERVINKDDD 132
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRAL--SPKQKGFSVILSDMCPSV 125
G V+ +D+ +K P L D Q ++++AL + + + ++L D PS
Sbjct: 133 GLVIAVDL--LKFPPL--DGVTQITGDFTKKETQDEIKALLGTEENRFVDIVLCDAAPSA 188
Query: 126 SGITTKDAALSVELGMRAVDLAL 148
SG KD V++ A + L
Sbjct: 189 SGFKNKDHLAIVQIIAAATNFTL 211
>gi|15599946|ref|NP_253440.1| cell division protein FtsJ [Pseudomonas aeruginosa PAO1]
gi|116052899|ref|YP_793216.1| cell division protein FtsJ [Pseudomonas aeruginosa UCBPP-PA14]
gi|218893847|ref|YP_002442716.1| cell division protein FtsJ [Pseudomonas aeruginosa LESB58]
gi|313109733|ref|ZP_07795673.1| cell division protein FtsJ [Pseudomonas aeruginosa 39016]
gi|355642733|ref|ZP_09052867.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas sp.
2_1_26]
gi|386060920|ref|YP_005977442.1| cell division protein FtsJ [Pseudomonas aeruginosa M18]
gi|386063750|ref|YP_005979054.1| cell division protein [Pseudomonas aeruginosa NCGM2.S1]
gi|416856863|ref|ZP_11912381.1| cell division protein FtsJ [Pseudomonas aeruginosa 138244]
gi|418586250|ref|ZP_13150294.1| cell division protein FtsJ [Pseudomonas aeruginosa MPAO1/P1]
gi|418592932|ref|ZP_13156792.1| cell division protein FtsJ [Pseudomonas aeruginosa MPAO1/P2]
gi|421156273|ref|ZP_15615722.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 14886]
gi|421170539|ref|ZP_15628482.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 700888]
gi|421177007|ref|ZP_15634664.1| cell division protein FtsJ [Pseudomonas aeruginosa CI27]
gi|421182826|ref|ZP_15640296.1| cell division protein FtsJ [Pseudomonas aeruginosa E2]
gi|421519313|ref|ZP_15965984.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa PAO579]
gi|424944461|ref|ZP_18360224.1| cell division protein FtsJ [Pseudomonas aeruginosa NCMG1179]
gi|12230965|sp|P95454.2|RLME_PSEAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|122257090|sp|Q02FS0.1|RLME_PSEAB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226705300|sp|B7V1G4.1|RLME_PSEA8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|9951015|gb|AAG08138.1|AE004889_1 cell division protein FtsJ [Pseudomonas aeruginosa PAO1]
gi|115588120|gb|ABJ14135.1| cell division protein FtsJ [Pseudomonas aeruginosa UCBPP-PA14]
gi|218774075|emb|CAW29891.1| cell division protein FtsJ [Pseudomonas aeruginosa LESB58]
gi|310882175|gb|EFQ40769.1| cell division protein FtsJ [Pseudomonas aeruginosa 39016]
gi|334841284|gb|EGM19917.1| cell division protein FtsJ [Pseudomonas aeruginosa 138244]
gi|346060907|dbj|GAA20790.1| cell division protein FtsJ [Pseudomonas aeruginosa NCMG1179]
gi|347307226|gb|AEO77340.1| cell division protein FtsJ [Pseudomonas aeruginosa M18]
gi|348032309|dbj|BAK87669.1| cell division protein [Pseudomonas aeruginosa NCGM2.S1]
gi|354830171|gb|EHF14226.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas sp.
2_1_26]
gi|375043390|gb|EHS36016.1| cell division protein FtsJ [Pseudomonas aeruginosa MPAO1/P1]
gi|375048281|gb|EHS40808.1| cell division protein FtsJ [Pseudomonas aeruginosa MPAO1/P2]
gi|404345232|gb|EJZ71584.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa PAO579]
gi|404519148|gb|EKA29922.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 14886]
gi|404523052|gb|EKA33500.1| cell division protein FtsJ [Pseudomonas aeruginosa ATCC 700888]
gi|404530095|gb|EKA40108.1| cell division protein FtsJ [Pseudomonas aeruginosa CI27]
gi|404541268|gb|EKA50633.1| cell division protein FtsJ [Pseudomonas aeruginosa E2]
gi|453043953|gb|EME91680.1| 23S rRNA methyltransferase J [Pseudomonas aeruginosa PA21_ST175]
Length = 207
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DR 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V A ++ + +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVFARILEAIGDH---------PVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 125 NMSGVRAADQPRAMYLCELALDLA------------------GRVLRPGGDFLIKIFQGE 166
>gi|121594725|ref|YP_986621.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax sp. JS42]
gi|120606805|gb|ABM42545.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidovorax sp. JS42]
Length = 237
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 90/185 (48%), Gaps = 40/185 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I +Q LIKPG V+DLG +PGAW Q + L P +G
Sbjct: 38 DTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLGSSPGAWSQYVRRRLSP--DG 95
Query: 68 -------GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116
G ++ +D+ ++ V L D R + V A + V+A + V
Sbjct: 96 AAVGQLNGVIIALDILPMEPIEGVTFLQGDFREEEVLAGL----QEAVQA-----RPVDV 146
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176
++SDM P++SG+ + DA L AVD A+ LKP G LV
Sbjct: 147 VVSDMAPNLSGVESVDAVRIAHLIELAVDFAVHH------------------LKPEGALV 188
Query: 177 IKLLE 181
+KL
Sbjct: 189 VKLFH 193
>gi|56460084|ref|YP_155365.1| 23S rRNA methyltransferase [Idiomarina loihiensis L2TR]
gi|81362904|sp|Q5QXK8.1|RLME_IDILO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56179094|gb|AAV81816.1| 23S rRNA methylase [Idiomarina loihiensis L2TR]
Length = 208
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 85/181 (46%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ G +R+ FKL +IQK+ KLIK G +V+DLG APG W Q NG
Sbjct: 19 DQFVQKAQKKGLRSRAVFKLEEIQKRDKLIKKGQTVVDLGAAPGGWSQYVADYF----NG 74
Query: 68 -GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
G ++ D+ + V L D R ++V ++ K V+LSDM
Sbjct: 75 DGQIIACDILAMDPIAGVDFLQGDFREESVLEALLERIGG---------KNVDVVLSDMA 125
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG T D A S+ L A+D+ VLKPGG +K+ +
Sbjct: 126 PNMSGNGTVDQARSMYLVELALDMC------------------HQVLKPGGSFAVKVFQG 167
Query: 183 Q 183
Q
Sbjct: 168 Q 168
>gi|73541859|ref|YP_296379.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia eutropha
JMP134]
gi|83305667|sp|Q46Z98.1|RLME_CUPPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|72119272|gb|AAZ61535.1| 23S rRNA Um-2552 2'-O-methyltransferase [Ralstonia eutropha JMP134]
Length = 225
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 81/150 (54%), Gaps = 15/150 (10%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG--PLD 65
D + + AQR GY AR+A+KL +I +Q KLI+PG ++DLG APG+W Q A L P
Sbjct: 21 DPYVKMAQREGYRARAAYKLKEIDEQDKLIQPGQVIVDLGAAPGSWSQYARNKLAASPRA 80
Query: 66 NG----GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117
G G+VV ID+ ++ V + D R + DV V A S K ++
Sbjct: 81 TGGKPDGAVVAIDILPMEPVADVTFIQGDFREE----DVFRQLEEVVMAASGGAK-IDLV 135
Query: 118 LSDMCPSVSGITTKDAALSVELGMRAVDLA 147
LSDM P++SG+ + D+A L A+D A
Sbjct: 136 LSDMAPNLSGVASADSARIEYLCDLALDFA 165
>gi|300703813|ref|YP_003745415.1| 23S rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
gi|299071476|emb|CBJ42798.1| 23S rRNA methyltransferase [Ralstonia solanacearum CFBP2957]
Length = 221
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 43/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R + V Q+ A+ G
Sbjct: 77 KDGRID--GAIVAIDILPMEPVADVTFIQGDFREEAV--------FRQLEAIVLDATGGG 126
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ A LKP
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFA------------------QAHLKPE 168
Query: 173 GHLVIK 178
G L+IK
Sbjct: 169 GALLIK 174
>gi|207742905|ref|YP_002259297.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum IPO1609]
gi|421897997|ref|ZP_16328364.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum MolK2]
gi|206589203|emb|CAQ36165.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum MolK2]
gi|206594300|emb|CAQ61227.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum IPO1609]
Length = 230
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 43/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 26 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 85
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R + V Q+ A+ G
Sbjct: 86 KDGRID--GAIVAIDILPMEPVADVAFIQGDFREEAV--------FQQLEAIVLDATGGG 135
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ A LKP
Sbjct: 136 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFA------------------QAHLKPE 177
Query: 173 GHLVIK 178
G L+IK
Sbjct: 178 GALLIK 183
>gi|114569722|ref|YP_756402.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Maricaulis maris MCS10]
gi|122316269|sp|Q0AQH3.1|RLME_MARMM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|114340184|gb|ABI65464.1| 23S rRNA Um-2552 2'-O-methyltransferase [Maricaulis maris MCS10]
Length = 279
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 29/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+A+KLLQ+ +++KL+KPG V+DLG APG W+QVA +S
Sbjct: 93 DPYVKKAQMEGYRSRAAYKLLQLDERFKLLKPGMRVVDLGSAPGGWVQVALKS-----GA 147
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
VVGID+ +++ + AD +L ++ + ++SD+ P +G
Sbjct: 148 SEVVGIDLLEMEAIAGATLLEKDFTDADAPSLVKAEMGGAA------DAVVSDLAPWTTG 201
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
T D V L A A+ LKPGG + K+ +
Sbjct: 202 HKTTDHLRIVALAELAAHFAV------------------ETLKPGGFFIAKVFQ 237
>gi|421887845|ref|ZP_16318981.1| 23S rRNA methyltransferase [Ralstonia solanacearum K60-1]
gi|378966823|emb|CCF95729.1| 23S rRNA methyltransferase [Ralstonia solanacearum K60-1]
Length = 230
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 43/189 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 26 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 85
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R + V Q+ A+ G
Sbjct: 86 KDGRID--GAIVAIDILPMEPVADVTFIQGDFREEAV--------FQQLEAIVLDATGGG 135
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ A LKP
Sbjct: 136 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFA------------------QAHLKPE 177
Query: 173 GHLVIKLLE 181
G L+IK
Sbjct: 178 GALLIKCFH 186
>gi|254787193|ref|YP_003074622.1| ribosomal RNA large subunit methyltransferase J [Teredinibacter
turnerae T7901]
gi|237683719|gb|ACR10983.1| ribosomal RNA large subunit methyltransferase J [Teredinibacter
turnerae T7901]
Length = 206
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + +Q+ GY +R+++KL+++ + KL +PG +V+DLG APG W QVA Q +G +
Sbjct: 17 DQYVKASQKDGYRSRASYKLIELDNKDKLFRPGMTVVDLGAAPGGWSQVAVQQIG---DK 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V + D ++V +++ + RA +++SDM P
Sbjct: 74 GQVIASDILPMDSIAGVTFIQGDFTEESVLEELLGAMDGE-RA--------DLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+T D S+ L A+D+A VLKPGG V K+ +
Sbjct: 125 NMSGVTAVDQPKSMYLVELALDMA------------------KQVLKPGGTFVCKVFHGE 166
>gi|143459181|sp|A1W8H0.2|RLME_ACISJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
Length = 220
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 38/184 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I +Q LIKPG V+DLG +PGAW Q + L P D
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLGSSPGAWSQYVRRRLSP-DGA 79
Query: 68 ------GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117
G ++ +D+ ++ V L D R + V A + V+A + V+
Sbjct: 80 AVGQLNGVIIALDILPMEPIEGVTFLQGDFREEEVLAGL----QEAVQA-----RPVDVV 130
Query: 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
+SDM P++SG+ + DA L AVD A+ LKP G LV+
Sbjct: 131 VSDMAPNLSGVESVDAVRIAHLIELAVDFAVHH------------------LKPEGALVV 172
Query: 178 KLLE 181
KL
Sbjct: 173 KLFH 176
>gi|89255843|ref|YP_513205.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica LVS]
gi|115314330|ref|YP_763053.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica OSU18]
gi|156501823|ref|YP_001427888.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|254367205|ref|ZP_04983235.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica 257]
gi|290954398|ref|ZP_06559019.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica URFT1]
gi|422938310|ref|YP_007011457.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica FSC200]
gi|423050167|ref|YP_007008601.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
holarctica F92]
gi|122325637|sp|Q0BNB8.1|RLME_FRATO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|122501138|sp|Q2A4Z7.1|RLME_FRATH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040692|sp|A7NAC9.1|RLME_FRATF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|89143674|emb|CAJ78873.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica LVS]
gi|115129229|gb|ABI82416.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica OSU18]
gi|134253025|gb|EBA52119.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica 257]
gi|156252426|gb|ABU60932.1| ribosomal RNA large subunit methyltransferase J [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|407293461|gb|AFT92367.1| ribosomal large subunit methyltransferase J [Francisella tularensis
subsp. holarctica FSC200]
gi|421950889|gb|AFX70138.1| 23S rRNA methyltransferase J [Francisella tularensis subsp.
holarctica F92]
Length = 206
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y+L KP V+DLG +PG W + + +G
Sbjct: 17 DYYVIQANKLGYRSRASFKILEIQDKYQLFKPNMFVVDLGASPGGWSEQVIKYIGK---N 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDMCPSVS 126
G ++ +D+ ++ P A V+ + D + + Q + L QK ++SDM P++S
Sbjct: 74 GKLIALDLLEM-API----AGVEFIQGDFSSDETYQKLNTLVNNQK-IDCVISDMAPNLS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G T D A S+ L A+D A
Sbjct: 128 GNKTSDQAKSIYLLELALDFA 148
>gi|398829629|ref|ZP_10587826.1| 23S rRNA methylase [Phyllobacterium sp. YR531]
gi|398216556|gb|EJN03102.1| 23S rRNA methylase [Phyllobacterium sp. YR531]
Length = 236
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + ++ GY +R+A+KL++I +YK++K G ++DLG APG W Q+A +G D
Sbjct: 42 DPYVQRSKADGYRSRAAYKLIEIDDRYKILKKGQRIIDLGAAPGGWSQIAASIVGSPDEQ 101
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
+VVGID LH D V + D ++ P + AL + +++SDM
Sbjct: 102 PTVVGIDY-------LHIDPLPGVTLLEMDFLDDTAPQKLMEALGGEP---DIVMSDMAA 151
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D + L A D A+ VL+PGGH + K +
Sbjct: 152 PTTGHRRTDHIRTTHLCEVAADFAV------------------SVLRPGGHFLTKTFQ 191
>gi|355572364|ref|ZP_09043508.1| Ribosomal RNA large subunit methyltransferase E [Methanolinea tarda
NOBI-1]
gi|354824738|gb|EHF08980.1| Ribosomal RNA large subunit methyltransferase E [Methanolinea tarda
NOBI-1]
Length = 202
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D Y A R GY +R+A+KL +IQ+++ LI+ +VLDLG APG+WLQV +S+
Sbjct: 8 DSAYVRAIREGYRSRAAYKLKEIQERFHLIRDTDNVLDLGAAPGSWLQV-TRSI----TK 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSVS 126
G V+GID+ + A ++ V+ V ++ ++R + G +++LSD P +S
Sbjct: 63 GRVLGIDLAPI--------APLEGVTTLVGDITDPRMRMEARSILGTVNIVLSDASPKLS 114
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A ++ LG + A VLKPGG+L++K + +D
Sbjct: 115 GNRSYDQARAIGLGEDVLSFA------------------CAVLKPGGNLLMKSFQGED 154
>gi|167626618|ref|YP_001677118.1| ribosomal RNA large subunit methyltransferase J [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|189040691|sp|B0TZQ8.1|RLME_FRAP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|167596619|gb|ABZ86617.1| ribosomal RNA large subunit methyltransferase J [Francisella
philomiragia subsp. philomiragia ATCC 25017]
Length = 206
Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+++IQ +Y L K ++DLG APG W + + +G N
Sbjct: 17 DYYVLQANKLGYRSRASFKIIEIQDKYNLFKQNMFIIDLGAAPGGWSEQVVKFIG---NN 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++ +D+ ++ P + S+D NQ+ K ++SDM P++SG
Sbjct: 74 GKLIALDLLEM-APIAGVEFIQGNFSSDETYERLNQL----INDKKIDCVISDMAPNLSG 128
Query: 128 ITTKDAALSVELGMRAVDLA 147
T D A S+ L A+D A
Sbjct: 129 NKTSDQARSIHLLELALDFA 148
>gi|429744052|ref|ZP_19277572.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
taxon 020 str. F0370]
gi|429163935|gb|EKY06114.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
taxon 020 str. F0370]
Length = 206
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 32/177 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W Q A + G
Sbjct: 18 DHYVHLAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQAAAKLAGA---S 74
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG---FSVILSDMCPS 124
G V +D+ +P A V+ VS + N V A G +++ DM P+
Sbjct: 75 GKVFALDI----LPM----AAVEGVSFIQGDFRENDVLAQFEALLGGRALDLVICDMAPN 126
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+SG DAA S+ L A+D A LK GG+ ++K+ +
Sbjct: 127 MSGHAVTDAAKSLYLNELALDFARNH------------------LKTGGNFLVKVFQ 165
>gi|396081764|gb|AFN83379.1| 23S rRNA methyl-transferase [Encephalitozoon romaleae SJ-2008]
Length = 551
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 90/177 (50%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY ARSAFKLLQ+ ++Y +K ++DL APG+W QVA Q + PL
Sbjct: 13 DKYYNLAKEKGYRARSAFKLLQMNRKYAFLKNAHVLIDLCAAPGSWSQVAAQEM-PLRR- 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+V +D++ +K D V+ +++D L ++R + QK V+L D P+V G
Sbjct: 71 -KIVAVDLEPIKFIG-DVDTIVEDITSDECRL---KLREILGAQKA-DVVLHDGAPNV-G 123
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++ A + L LAL LAS LK GG + K+ SQD
Sbjct: 124 TSWENDAFNQNL------LALHSTKLASE-----------FLKRGGVFITKVFRSQD 163
>gi|226466768|emb|CAX69519.1| hypothetical protein [Schistosoma japonicum]
Length = 260
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 26/185 (14%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G D FY A+ G+ +R+AFKL+Q+ +++K + ++DL APG WLQVA + +
Sbjct: 7 TGKARKDKFYYLAKETGFRSRAAFKLIQLNRRFKFLNSSKVLIDLCAAPGGWLQVAAKEM 66
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ ++G+D+ VP +H +V+T AD+ Q+ + V+L D
Sbjct: 67 -PI--ASQIIGVDL----VP-IHPIPKVKTFIADITTDKCKQILRNELNESKADVVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V AA S++ +AV L+L A+A+ L+ GG V K+
Sbjct: 119 APNVG------AAWSIDEYSQAV-LSLNSFAIATE-----------FLRRGGWFVTKVFR 160
Query: 182 SQDAQ 186
S+D +
Sbjct: 161 SRDYE 165
>gi|340362198|ref|ZP_08684593.1| ribosomal RNA large subunit methyltransferase J [Neisseria macacae
ATCC 33926]
gi|339887725|gb|EGQ77253.1| ribosomal RNA large subunit methyltransferase J [Neisseria macacae
ATCC 33926]
Length = 206
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G N
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---NS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R V A L + +++ DM P
Sbjct: 75 GRVFALDILPMDEIEGVSFIQGDFREDEVLAQFETLLD---------ARPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A + LK GG ++K+ +
Sbjct: 126 NMSGNAITDQARSFYLCELALDFA------------------ANHLKTGGSFLVKVFQ 165
>gi|82596865|ref|XP_726438.1| cell division protein FtsJ [Plasmodium yoelii yoelii 17XNL]
gi|23481849|gb|EAA18003.1| FtsJ cell division protein [Plasmodium yoelii yoelii]
Length = 125
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y+ A+ GY ARSAFKL+QI K+Y + K + ++DL APG WLQVA ++ ++
Sbjct: 13 DKYYKLAKSAGYRARSAFKLIQIAKKYNIFKNANILIDLCAAPGGWLQVAYKN---MNKN 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSP--KQKGFSVILSDMCPSV 125
+++G+D+ VP D V T+ +D+ S +R + K + VIL+D P+V
Sbjct: 70 STIIGVDL----VPIRKIDNNVITIKSDI--TSSECIRKIKDIIKYEKADVILNDGAPNV 123
>gi|424513744|emb|CCO66366.1| predicted protein [Bathycoccus prasinos]
Length = 1031
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 11/142 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY A+ G+ ARSAFKL+Q+ ++Y + + LDL APG WLQVA Q P+ +
Sbjct: 12 DKFYYLAKEQGFRARSAFKLVQLNRKYDFLSSAKACLDLCAAPGGWLQVA-QKYMPMQS- 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCPSV 125
++VGID+ +K P C V+ ++ PS + ++ ++P + +L D P+V
Sbjct: 70 -TIVGIDLASIK-PIRGCTTLVEDITT-----PSCRAAIKRVTPDGLKYDCVLHDGAPNV 122
Query: 126 SGITTKDAALSVELGMRAVDLA 147
G K+A L + A+ LA
Sbjct: 123 GGNYAKEAYSQAALTLDALKLA 144
>gi|386333241|ref|YP_006029410.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum Po82]
gi|334195689|gb|AEG68874.1| ribosomal rna large subunit methyltransferase j (cell division
protein ftsj) [Ralstonia solanacearum Po82]
Length = 221
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 25/155 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R + V Q+ A+ G
Sbjct: 77 KDGRID--GAIVAIDILPMEPVADVTFIQGDFREEAV--------FQQLEAIVLDATGGG 126
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLA 147
++LSDM P++SG+ + DAA + AV+ A
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFA 161
>gi|198284444|ref|YP_002220765.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665397|ref|YP_002427111.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|415963264|ref|ZP_11557867.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
sp. GGI-221]
gi|226703276|sp|B7J8G6.1|RLME_ACIF2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226703277|sp|B5ENR5.1|RLME_ACIF5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|198248965|gb|ACH84558.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218517610|gb|ACK78196.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|339832886|gb|EGQ60768.1| ribosomal RNA large subunit methyltransferase J [Acidithiobacillus
sp. GGI-221]
Length = 219
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 90/178 (50%), Gaps = 37/178 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A + GY +R+++KLL+IQ++ LI+PG VLD+G APG W QVA +G
Sbjct: 17 DPFVQRAMKEGYRSRASYKLLEIQQKDHLIRPGMRVLDVGAAPGGWTQVAAPLIG---RK 73
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVIN---LPSNQVRALSPKQKGFSVILSDMC 122
G +V +D L D A + DV + L + Q AL G +I+SDM
Sbjct: 74 GRLVAVD-------RLAMDPVADATVICGDVYDDAILAACQ-EALP---GGADLIMSDMA 122
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
P++SGI + D A +++L A+D+A L PGG L+IK+
Sbjct: 123 PNMSGIASVDQARAIDLAELALDMA------------------HRWLVPGGALLIKVF 162
>gi|66047415|ref|YP_237256.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae B728a]
gi|289676016|ref|ZP_06496906.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae FF5]
gi|302185424|ref|ZP_07262097.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
syringae 642]
gi|422615846|ref|ZP_16684553.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
japonica str. M301072]
gi|422671904|ref|ZP_16731269.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
aceris str. M302273]
gi|424069354|ref|ZP_17806800.1| FtsJ cell division protein [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424073739|ref|ZP_17811154.1| FtsJ cell division protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440742410|ref|ZP_20921735.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP39023]
gi|75500697|sp|Q4ZNQ4.1|RLME_PSEU2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|63258122|gb|AAY39218.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas syringae pv.
syringae B728a]
gi|330895314|gb|EGH27652.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
japonica str. M301072]
gi|330969643|gb|EGH69709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
aceris str. M302273]
gi|407994921|gb|EKG35474.1| FtsJ cell division protein [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407995551|gb|EKG36074.1| FtsJ cell division protein [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440377247|gb|ELQ13896.1| 23S rRNA methyltransferase J [Pseudomonas syringae BRIP39023]
Length = 216
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|348027847|ref|YP_004870533.1| cell division protein FtsJ [Glaciecola nitratireducens FR1064]
gi|347945190|gb|AEP28540.1| cell division protein FtsJ [Glaciecola nitratireducens FR1064]
Length = 206
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 36/179 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+++KL++I ++ KLI+PGS V+DLG APG W QV +G +
Sbjct: 17 DPYVKKAQIDGYRSRASYKLIEINEKDKLIRPGSVVMDLGSAPGGWSQVVSPWVG---DS 73
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G V+ D+ V V + D + V +++ L +V V++SDM
Sbjct: 74 GRVIASDILPMDGIVGVTFIQGDFTEEAVYKQILSELNGEKV----------DVVVSDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P++SG+ T D S+ L A+D+A VLKPGG K+ +
Sbjct: 124 PNLSGVNTTDQYSSIYLVELALDMA------------------RNVLKPGGSFCAKVFQ 164
>gi|405118494|gb|AFR93268.1| RNA methyltransferase [Cryptococcus neoformans var. grubii H99]
Length = 908
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 26/183 (14%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D FYR A+ GY ARSAFKL+ + ++Y L+ +DL APG WLQVA +
Sbjct: 8 TGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKSRCCIDLCAAPGGWLQVAEKY- 66
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ G ++G+D+ +K P H V T +D+ Q ++L D
Sbjct: 67 --MPKGSLIIGVDLNAIK-PLPH----VTTFVSDITTAHCRQTLRQHMHDWKADLVLHDG 119
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 120 APNVGSAWVQDAFTQNELVLQSLKLA------------------TEFLAKGGSFVTKVFR 161
Query: 182 SQD 184
SQD
Sbjct: 162 SQD 164
>gi|83747764|ref|ZP_00944798.1| 23S rRNA Um2552 2'-O-methyltransferase [Ralstonia solanacearum
UW551]
gi|83725536|gb|EAP72680.1| 23S rRNA Um2552 2'-O-methyltransferase [Ralstonia solanacearum
UW551]
Length = 279
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 43/189 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 75 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 134
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R + V Q+ A+ G
Sbjct: 135 KDGRID--GAIVAIDILPMEPVADVAFIQGDFREEAV--------FQQLEAIVLDATGGG 184
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ A LKP
Sbjct: 185 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFA------------------QAHLKPE 226
Query: 173 GHLVIKLLE 181
G L+IK
Sbjct: 227 GALLIKCFH 235
>gi|337754470|ref|YP_004646981.1| cell division protein FtsJ [Francisella sp. TX077308]
gi|336446075|gb|AEI35381.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Francisella sp. TX077308]
Length = 206
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 16/144 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y L K ++DLG APG W + + +G N
Sbjct: 17 DYYVAQANKLGYRSRASFKILEIQDKYNLFKQNMFIVDLGAAPGGWSEQVIKFIG---NN 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ +D+ + V + D +I L +N + ++SDM P
Sbjct: 74 GKLIALDLLDMTPIAGVEFIQGDFSSDETYDKLIQLINN---------RKIDCVISDMSP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLA 147
++SG T D A S+ L A+D A
Sbjct: 125 NLSGNKTSDQARSIHLLELALDFA 148
>gi|254294177|ref|YP_003060200.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hirschia baltica ATCC
49814]
gi|254042708|gb|ACT59503.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Hirschia baltica ATCC
49814]
Length = 251
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A G+ AR+A+KLL++ +++ L+K V+DLGCAPG+W QV Q G
Sbjct: 60 DPYVRRAHEAGWRARAAYKLLELDEKFGLLKNTQRVVDLGCAPGSWTQVLMQKYG----A 115
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
VVGID+ V + H + DV N P +S Q +++LSDM + +
Sbjct: 116 HYVVGIDLLPVDPIAGAHL------IEGDV-NDPEAMAEMMSVLQGKPTLVLSDMAAATT 168
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D +V+L AV A+
Sbjct: 169 GHKQTDHVRTVQLAEMAVQFAI 190
>gi|422403933|ref|ZP_16480989.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330875231|gb|EGH09380.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 216
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|396499516|ref|XP_003845494.1| hypothetical protein LEMA_P008020.1 [Leptosphaeria maculans JN3]
gi|312222075|emb|CBY02015.1| hypothetical protein LEMA_P008020.1 [Leptosphaeria maculans JN3]
Length = 356
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DFF REA+ G +R+AFKLL++ K++KL KPG +V+DLG APG+W QVA P
Sbjct: 63 DFFAREARVQGLKSRAAFKLLELNKKHKLFKPGQTVVDLGYAPGSWSQVAVNCTDP---N 119
Query: 68 GSVVGIDV 75
G V+GID+
Sbjct: 120 GRVIGIDI 127
>gi|71734802|ref|YP_276319.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257482269|ref|ZP_05636310.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|289624594|ref|ZP_06457548.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|289646953|ref|ZP_06478296.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. aesculi str. 2250]
gi|416018564|ref|ZP_11565492.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. B076]
gi|416025176|ref|ZP_11568957.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422583406|ref|ZP_16658531.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|422596751|ref|ZP_16671030.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|83305664|sp|Q48E69.1|RLME_PSE14 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|71555355|gb|AAZ34566.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|320322536|gb|EFW78629.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. B076]
gi|320329995|gb|EFW85982.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330868238|gb|EGH02947.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330987047|gb|EGH85150.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 216
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|298157073|gb|EFH98162.1| 23S rRNA U2552 ribose 2'-O-methyltransferase [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 216
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|118589174|ref|ZP_01546581.1| cell division protein ftsJ [Stappia aggregata IAM 12614]
gi|118438503|gb|EAV45137.1| cell division protein ftsJ [Stappia aggregata IAM 12614]
Length = 235
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 5/140 (3%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A+ GY +R+A+KL++I ++KL+KPG V+DLGCAPG W QVA Q + +
Sbjct: 37 DPYVRRAKMDGYRSRAAYKLIEIDDKHKLLKPGYRVVDLGCAPGGWCQVAVQRVQSSVDA 96
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
VVGID +++ + +Q D + P+ + AL + V+LSDM +G
Sbjct: 97 PKVVGIDY--LEMDHVRGTTFLQKDFLD-DDAPAALMEALGGHKP--DVVLSDMAAPTTG 151
Query: 128 ITTKDAALSVELGMRAVDLA 147
D + L A+D A
Sbjct: 152 HKQTDHLRTTHLFEIAIDFA 171
>gi|70944493|ref|XP_742172.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521000|emb|CAH79645.1| hypothetical protein PC000405.03.0 [Plasmodium chabaudi chabaudi]
Length = 284
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 80/142 (56%), Gaps = 9/142 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y+ A+ GY ARSAFKL+QI K+Y + K + ++DL APG WLQVA +++
Sbjct: 13 DKYYKLAKSAGYRARSAFKLIQIAKKYNIFKNANILIDLCAAPGGWLQVAYKNMSK---S 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
+++G+D+ +P D V T+ +D+ ++ +++ + +K VIL+D P+V
Sbjct: 70 STIIGVDL----MPIRKIDNNVITIKSDITSVECIRKIKDIIKYEKA-DVILNDGAPNVG 124
Query: 127 GITTKDAALSVELGMRAVDLAL 148
+ D+ L + ++ LA
Sbjct: 125 TTYSYDSFNQNILVLSSIKLAY 146
>gi|422668719|ref|ZP_16728573.1| ribosomal RNA methyltransferase RrmJ/FtsJ, partial [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330981082|gb|EGH79185.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 204
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|299066492|emb|CBJ37682.1| 23S rRNA methyltransferase [Ralstonia solanacearum CMR15]
Length = 221
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 43/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R ++V ++ A+ G
Sbjct: 77 KDGRID--GAIVAIDILPMEPVADVTFIQGDFREESV--------FQELEAIVLDATGGG 126
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ A LKP
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFA------------------QAHLKPE 168
Query: 173 GHLVIK 178
G L+IK
Sbjct: 169 GALLIK 174
>gi|300310714|ref|YP_003774806.1| 23S rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
gi|300073499|gb|ADJ62898.1| 23S rRNA methyltransferase (Cell division protein FtsJ) protein
[Herbaspirillum seropedicae SmR1]
Length = 215
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 88/174 (50%), Gaps = 26/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I ++ +LIKPG ++DLGC PG+W Q L G
Sbjct: 17 DPYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPGSWCQYVRNKLA----G 72
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPS 124
GI + + L D A V + D + P Q+ A+ +K ++LSDM P+
Sbjct: 73 AEGGGIHGTIIGLDILPMDPIADVHYIQGDFREDEPVRQLEAVLDGRKA-DLVLSDMAPN 131
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
+SG+ DAA L +DLA+ A L +KPGG L++K
Sbjct: 132 LSGVAIADAARVEYL----IDLAIDFAQLH--------------MKPGGSLLVK 167
>gi|58698158|ref|ZP_00373080.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58535308|gb|EAL59385.1| FtsJ-like methyltransferase [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 187
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 31/166 (18%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
GY +RSA+KL+++ ++KL + G ++DLG +PG WLQVA Q G +VV +DVK
Sbjct: 8 GYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWLQVASQ------KGANVVALDVKP 61
Query: 78 VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSV 137
+ + V+ + D+IN ++ K + F VILSDM P G+ + D +
Sbjct: 62 MNAIN-----GVEFIQCDIIN--EFEILREKFKDQKFDVILSDMAPESCGLKSLDHIRIM 114
Query: 138 ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
L A++ A L GG V+K+ + +
Sbjct: 115 LLCEAALNFA------------------KHFLSHGGTFVVKIFQGE 142
>gi|427403734|ref|ZP_18894616.1| ribosomal RNA large subunit methyltransferase E [Massilia timonae
CCUG 45783]
gi|425717717|gb|EKU80673.1| ribosomal RNA large subunit methyltransferase E [Massilia timonae
CCUG 45783]
Length = 215
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 22/172 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ G+ AR+A+KL +I +Q KLIKPG V+DLGC PG+W Q + L D G
Sbjct: 17 DPYVKLAQKEGFRARAAYKLKEIDEQEKLIKPGQVVVDLGCTPGSWAQYTRRKLAGADGG 76
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G + + + + A VQ + D Q+ + +K ++LSDM P++S
Sbjct: 77 GINGT--IIGLDILPMEPIADVQYIQGDFREEEVLTQLDEVLSGRKA-DLVLSDMAPNLS 133
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
GI+ DAA L +DLA+ + L LKPGG LV+K
Sbjct: 134 GISHADAARMEHL----IDLAIEFSQLH--------------LKPGGGLVVK 167
>gi|309782468|ref|ZP_07677192.1| ribosomal RNA large subunit methyltransferase J [Ralstonia sp.
5_7_47FAA]
gi|404396297|ref|ZP_10988092.1| ribosomal RNA large subunit methyltransferase E [Ralstonia sp.
5_2_56FAA]
gi|308918805|gb|EFP64478.1| ribosomal RNA large subunit methyltransferase J [Ralstonia sp.
5_7_47FAA]
gi|348614786|gb|EGY64325.1| ribosomal RNA large subunit methyltransferase E [Ralstonia sp.
5_2_56FAA]
Length = 221
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 43/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R V Q+ + + G
Sbjct: 77 KDGRID--GAIVAIDILPMEAIADVTFIQGDFREDDV--------FRQLEEIVLEATGGG 126
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ A+ LKP
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAH------------------LKPE 168
Query: 173 GHLVIK 178
G L+IK
Sbjct: 169 GALLIK 174
>gi|59800827|ref|YP_207539.1| hypothetical protein NGO0383 [Neisseria gonorrhoeae FA 1090]
gi|240013700|ref|ZP_04720613.1| hypothetical protein NgonD_03460 [Neisseria gonorrhoeae DGI18]
gi|240016140|ref|ZP_04722680.1| hypothetical protein NgonFA_03058 [Neisseria gonorrhoeae FA6140]
gi|240120769|ref|ZP_04733731.1| hypothetical protein NgonPI_03133 [Neisseria gonorrhoeae PID24-1]
gi|268603220|ref|ZP_06137387.1| cell division protein [Neisseria gonorrhoeae PID1]
gi|293399468|ref|ZP_06643621.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae F62]
gi|75356299|sp|Q5F9L0.1|RLME_NEIG1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|59717722|gb|AAW89127.1| putative methyltranferase involved in cell division [Neisseria
gonorrhoeae FA 1090]
gi|268587351|gb|EEZ52027.1| cell division protein [Neisseria gonorrhoeae PID1]
gi|291610037|gb|EFF39159.1| ribosomal RNA large subunit methyltransferase J [Neisseria
gonorrhoeae F62]
Length = 206
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ K+IKPG+ + DLG APG+W QVA + G
Sbjct: 18 DQYVHMAQKDGYRARAAYKLLEINEKDKIIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|410693994|ref|YP_003624616.1| putative Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) (Cell division protein ftsJ)
[Thiomonas sp. 3As]
gi|294340419|emb|CAZ88800.1| putative Ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) (Cell division protein ftsJ)
[Thiomonas sp. 3As]
Length = 216
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 18/147 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY AR+A+KL +I + L++PG V+DLG PG+W Q A L + G
Sbjct: 20 DPYVKMAQREGYRARAAYKLKEIDEAEGLLRPGQIVVDLGSTPGSWSQYARNRL--MRGG 77
Query: 68 ---GSVVGIDVKKVK-VPSLHC---DARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
G+++ +D+ ++ VP +H D R + V NQ+ AL +K V+LSD
Sbjct: 78 AVQGTILSLDLLPMEPVPDVHFLLGDFREEAV--------VNQLEALLEGRK-VDVVLSD 128
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLA 147
M P+++GI + DAA L A+D A
Sbjct: 129 MAPNLTGIPSADAARIEHLSELALDFA 155
>gi|349609395|ref|ZP_08888790.1| ribosomal RNA large subunit methyltransferase E [Neisseria sp.
GT4A_CT1]
gi|348611956|gb|EGY61584.1| ribosomal RNA large subunit methyltransferase E [Neisseria sp.
GT4A_CT1]
Length = 206
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I + KLIKPG+ + DLG APG+W QVA + +G N
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINGKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---NS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R V A L + +++ DM P
Sbjct: 75 GRVFALDILPMDEIEGVSFIQGDFREDEVLAQFETLLD---------ARPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A VN+ LK GG ++K+ +
Sbjct: 126 NMSGNAVTDQARSFYLCELALDFA---------VNH---------LKTGGSFLVKVFQ 165
>gi|410635152|ref|ZP_11345770.1| ribosomal RNA large subunit methyltransferase E [Glaciecola
lipolytica E3]
gi|410145339|dbj|GAC12975.1| ribosomal RNA large subunit methyltransferase E [Glaciecola
lipolytica E3]
Length = 206
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+++KL++I ++ KLI+PG+ V+DLG APG W Q+ +G
Sbjct: 17 DPYVKKAQVDGYRSRASYKLIEINEKDKLIRPGNIVMDLGSAPGGWSQIVAPMVG---KK 73
Query: 68 GSVVGIDV----KKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V + D ++V ++ N+ V++SDM P
Sbjct: 74 GRVIASDILPMDSIIDVTFIQGDFTEESVYDQIVAELDNE---------KVDVVVSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG+ D S+ L A+D+A VLKPGG+ K+ +
Sbjct: 125 NISGVNATDQYSSMYLVELALDMA------------------RNVLKPGGNFCAKVFQ 164
>gi|268598561|ref|ZP_06132728.1| cell division protein FtsJ [Neisseria gonorrhoeae MS11]
gi|268582692|gb|EEZ47368.1| cell division protein FtsJ [Neisseria gonorrhoeae MS11]
Length = 206
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+ +KLL+I ++ K+IKPG+ + DLG APG+W QVA + G
Sbjct: 18 DHYVHMAQKDGYRARATYKLLEINEKDKIIKPGTVLADLGSAPGSWSQVAAKLTG---TS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GTVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|449551052|gb|EMD42016.1| hypothetical protein CERSUDRAFT_147510 [Ceriporiopsis subvermispora
B]
Length = 877
Score = 75.9 bits (185), Expect = 6e-12, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYSFLENARCCIDLCAAPGGWLQVATKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
PL++ +VG+D+ +K +P RV T ++D+ + K V+L D
Sbjct: 68 -PLNS--VIVGVDLVPIKPIP------RVVTFASDITTTQCRNLIRGELKDWKADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 119 GAPNVGTAWVQDAYSQSELVLMSMKLAV 146
>gi|54307808|ref|YP_128828.1| 23S rRNA methyltransferase [Photobacterium profundum SS9]
gi|81400134|sp|Q6LUJ9.1|RLME_PHOPR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|46912231|emb|CAG19026.1| 23S rRNA methylase [Photobacterium profundum SS9]
Length = 209
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 21/151 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ GY +R+ FK+ +IQK+ KL+KPG +V+DLG APG W Q A + +G +
Sbjct: 20 DKYVQEAQKRGYRSRAIFKIEEIQKKDKLLKPGMTVVDLGAAPGGWSQYAAEVVG---DE 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTV-SADVINLPSNQVRALSPKQKGFSVILSDMC 122
G V+ D+ + V L D R + V SA + + + V V+LSDM
Sbjct: 77 GQVIACDILSMDSLPGVSFLQGDFREEAVLSALLERIQPDMV----------DVVLSDMA 126
Query: 123 PSVSGITTKD---AALSVELGMRAVDLALGP 150
P++SG D A VEL + L P
Sbjct: 127 PNMSGNLASDQPRAMYLVELALEMCKQVLAP 157
>gi|379009778|ref|YP_005267591.1| 23 S rRNA methyltransferase [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
gi|375158302|gb|AFA41368.1| 23 S rRNA methyltransferase [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
Length = 203
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 10/140 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F +E++R GY +R+ FKL ++QK +I G +VLDLG +PG W Q A Q ++N
Sbjct: 16 DKFVKESKRFGYRSRAWFKLDEMQKANNIITSGMTVLDLGSSPGGWSQYASQ---KVNNL 72
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D+K P L ++V + D + ++ + + VIL D+ P+++G
Sbjct: 73 GHVISCDIK----PMLEV-SKVSFILGDA--FKKDVLKKICKIKNKVDVILCDIAPNITG 125
Query: 128 ITTKDAALSVELGMRAVDLA 147
IT D + + +A++L
Sbjct: 126 ITEIDHPKCISINYKALNLC 145
>gi|422605009|ref|ZP_16677024.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. mori str. 301020]
gi|330888666|gb|EGH21327.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. mori str. 301020]
Length = 216
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|321251839|ref|XP_003192196.1| RNA methyltransferase [Cryptococcus gattii WM276]
gi|317458664|gb|ADV20409.1| RNA methyltransferase, putative [Cryptococcus gattii WM276]
Length = 907
Score = 75.9 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 26/183 (14%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D FYR A+ GY ARSAFKL+ + ++Y L+ +DL APG WLQVA +
Sbjct: 8 TGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKY- 66
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ G ++G+D+ +K P H V T +D+ Q ++L D
Sbjct: 67 --MPKGSLIIGVDLNAIK-PLPH----VTTFVSDITTPHCRQTLRQHMHDWKADLVLHDG 119
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 120 APNVGSAWVQDAFTQNELVLQSLKLA------------------TEFLAKGGSFVTKVFR 161
Query: 182 SQD 184
SQD
Sbjct: 162 SQD 164
>gi|255067624|ref|ZP_05319479.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
ATCC 29256]
gi|255048098|gb|EET43562.1| ribosomal RNA large subunit methyltransferase J [Neisseria sicca
ATCC 29256]
Length = 184
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 34/172 (19%)
Query: 14 AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGI 73
AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G N G V +
Sbjct: 2 AQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQVAAKLVG---NSGRVFAL 58
Query: 74 DVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGIT 129
D+ + V + D R V A L + +++ DM P++SG
Sbjct: 59 DILPMDEIEGVSFIQGDFREDEVLAQFETLLD---------ARPLDLVICDMAPNMSGNA 109
Query: 130 TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D A S L A+D A VN+ LK GG ++K+ +
Sbjct: 110 VTDQARSFYLCELALDFA---------VNH---------LKTGGSFLVKVFQ 143
>gi|241663317|ref|YP_002981677.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12D]
gi|240865344|gb|ACS63005.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12D]
Length = 221
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 43/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R V Q+ + + G
Sbjct: 77 KDGRID--GAIVAIDILPMEAIADVTFIQGDFREDDV--------FRQLEEIVLEATGGG 126
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ A+ LKP
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFAMAH------------------LKPE 168
Query: 173 GHLVIK 178
G L+IK
Sbjct: 169 GALLIK 174
>gi|302698005|ref|XP_003038681.1| hypothetical protein SCHCODRAFT_64580 [Schizophyllum commune H4-8]
gi|300112378|gb|EFJ03779.1| hypothetical protein SCHCODRAFT_64580 [Schizophyllum commune H4-8]
Length = 869
Score = 75.9 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYNFLETARCCIDLCAAPGGWLQVASKHM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+N V G+D+ +K +P RV T +AD+ + K V+L D
Sbjct: 68 P--NNSVIVAGVDLVPIKPIP------RVVTFAADITTTHCRNLLRGELKDWKADVVLHD 119
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 120 GAPNVGTAWIQDAYTQSELVLMSLKLAV 147
>gi|222110672|ref|YP_002552936.1| ribosomal RNA methyltransferase rrmj/ftsj [Acidovorax ebreus TPSY]
gi|221730116|gb|ACM32936.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax ebreus TPSY]
Length = 220
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 38/184 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I +Q LIKPG V+DLG +PGAW Q + L P D
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDEQLGLIKPGHVVVDLGSSPGAWSQYVRRRLSP-DGA 79
Query: 68 ------GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117
G ++ +D+ ++ V L D R + V A + + + + V+
Sbjct: 80 AVGQLNGVIIALDILPMEPIEGVTFLQGDFREEEVLARLQE---------AVQGRPVDVV 130
Query: 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
+SDM P++SG+ + DA L AVD A+ LKP G LV+
Sbjct: 131 VSDMAPNLSGVESVDAVRIAHLIELAVDFAVHH------------------LKPEGALVV 172
Query: 178 KLLE 181
KL
Sbjct: 173 KLFH 176
>gi|187929109|ref|YP_001899596.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12J]
gi|226705302|sp|B2UGQ0.1|RLME_RALPJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|187725999|gb|ACD27164.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Ralstonia pickettii 12J]
Length = 221
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 37/183 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115
G +D G++V ID+ ++ V + D R V + + V +S K
Sbjct: 77 KDGRID--GAIVAIDILPMEAIADVTFIQGDFREDEVFRQLEEI----VLEVSGGGK-VD 129
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175
++LSDM P++SG+ + DAA + AV+ A+ LKP G L
Sbjct: 130 LVLSDMAPNLSGVASADAARMEHIAELAVEFAMAH------------------LKPEGAL 171
Query: 176 VIK 178
+IK
Sbjct: 172 LIK 174
>gi|339489448|ref|YP_004703976.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida S16]
gi|338840291|gb|AEJ15096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas putida S16]
Length = 188
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 28/173 (16%)
Query: 12 REAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVV 71
++AQ+ GY +R+++KLL+IQ++ +LI+PG SV+DLG APG W QV + +G G ++
Sbjct: 2 KQAQKDGYRSRASYKLLEIQEKDRLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQGRLI 58
Query: 72 GIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITT 130
D+ ++ +P V + D Q + +++SDM P++SG
Sbjct: 59 ASDILEMDSIPD------VTFIQGDFTQDEVLQRILEAVGDSHVDLVISDMAPNMSGTPA 112
Query: 131 KDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
D ++ L A+DLA + VLKPGG +IK+ + +
Sbjct: 113 VDMPRAMFLCELALDLA------------------TRVLKPGGDFLIKIFQGE 147
>gi|393769849|ref|ZP_10358366.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
GXF4]
gi|392724671|gb|EIZ82019.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
GXF4]
Length = 241
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 27/174 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY +R+A+KL++I ++YKL++PG V+DLG APG W QVA + +G
Sbjct: 42 DPYVARAKREGYRSRAAYKLIEIDERYKLLRPGQRVVDLGAAPGGWSQVAARIVGAT--- 98
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVGID+ +++ P A V+ ++ D ++ P + + ++LSDM + +G
Sbjct: 99 GRVVGIDLLEIE-PM----AGVEFITLDFLD-PEAPEKLTTLLGGPADLVLSDMAANATG 152
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D +R + LA A A +L PGG + K+L+
Sbjct: 153 HKKTDH-------LRIIGLAETAAEFARE-----------ILAPGGAYLAKVLQ 188
>gi|333913568|ref|YP_004487300.1| ribosomal RNA large subunit methyltransferase E [Delftia sp. Cs1-4]
gi|333743768|gb|AEF88945.1| Ribosomal RNA large subunit methyltransferase E [Delftia sp. Cs1-4]
Length = 217
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 32/181 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I +Q KLI+PG++V+DLG PGAW Q + L P G
Sbjct: 21 DPYVKAAQKDGYRARAAYKLKEIDEQLKLIRPGATVVDLGSTPGAWSQYVRRCLSP--EG 78
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVINLPSNQVRALSPKQKGF-----SVILSD 120
+V ++ + + + L + VQ + D P L+ Q+ V++SD
Sbjct: 79 AAVGALNGRIISLDLLPMEPIEGVQFILGDFREEP-----VLAQLQEALGGGKADVVVSD 133
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P++SG T DAA L AVD ++ +KP G LV+KL
Sbjct: 134 MAPNLSGNGTTDAARIALLVELAVDFSIHH------------------MKPEGALVVKLF 175
Query: 181 E 181
Sbjct: 176 H 176
>gi|428176350|gb|EKX45235.1| hypothetical protein GUITHDRAFT_157875 [Guillardia theta CCMP2712]
Length = 294
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 94/178 (52%), Gaps = 25/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR+A+ +G+ ARSAFKLLQ+ +++KL++ + V+DL APG+W QV + L +
Sbjct: 10 DIYYRKAKEVGFRARSAFKLLQLDEEFKLLEGVNRVVDLCAAPGSWSQVISRQLADRRDQ 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
+V +D++++ V V D+ ++ ++++ L QK +++SD P V+
Sbjct: 70 SKIVAVDLQEMAPIE-----GVTLVQGDITSSVVADKIVQLFDGQKA-DIVVSDGAPDVT 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++ + +L+PGG V K+ +D
Sbjct: 124 GLHDIDEYVQSQLLLSALNIT------------------TVLLRPGGSFVAKIFRGKD 163
>gi|146308631|ref|YP_001189096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas mendocina
ymp]
gi|189040321|sp|A4XYE8.1|RLME_PSEMY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|145576832|gb|ABP86364.1| 23S rRNA Um-2552 2'-O-methyltransferase [Pseudomonas mendocina ymp]
Length = 207
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ + N V +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTDDAVFARILEAIGENPV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGVRAADQPRAMYLCELALDLA------------------GRVLRPGGDFLIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|350563180|ref|ZP_08932002.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalimicrobium
aerophilum AL3]
gi|349779044|gb|EGZ33391.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalimicrobium
aerophilum AL3]
Length = 205
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ G+ +R+ +KL +I ++ +L+KPG VLDLG APG W Q A Q++ P
Sbjct: 17 DPYVLQAQKEGWRSRAIYKLKEINEKDQLLKPGMLVLDLGAAPGGWSQYAAQNVSP---A 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ +D+ V+ V L D +T+ ++ S ++ +++SDM P
Sbjct: 74 GKVLALDILPVEPYAGVSFLQGDFTDETIFEQLLA---------SINERPVDLVMSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SG + A+ + M V+L L A VLKPGG++++K+ + +
Sbjct: 125 NFSG----NKAIDIPRAMYLVELTLDLA--------------ERVLKPGGNVLMKVFQGE 166
>gi|340052440|emb|CCC46720.1| putative FtsJ cell division protein [Trypanosoma vivax Y486]
Length = 914
Score = 75.9 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKL+Q+ ++Y + ++DL APG+W QVA + + P+ G
Sbjct: 14 DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKCRVLVDLCAAPGSWCQVAAKHM-PV--G 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VG+D+ V + + V+T D+ + + ++ +++ ++ D P+V G
Sbjct: 71 SKIVGVDL--VPIAPIR---GVKTFVGDITDDKTRKIIVTYLRREPVDCVIHDGAPNVGG 125
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++D L + A +A S +L+PGG V K+ SQD
Sbjct: 126 VWSRDLFEQNSLVLHAAKMA------------------STLLRPGGWFVTKVFRSQD 164
>gi|419954429|ref|ZP_14470567.1| 23S rRNA methyltransferase J [Pseudomonas stutzeri TS44]
gi|387968762|gb|EIK53049.1| 23S rRNA methyltransferase J [Pseudomonas stutzeri TS44]
Length = 212
Score = 75.9 bits (185), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 93/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V + D V A +++ + + +++SDM P
Sbjct: 74 GRLIASDILPMDSIADVTFIQGDFTEDAVFAQILD---------AIGEHPVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA + VL+PGG +IK+ + +
Sbjct: 125 NMSGVRASDQPRAMFLCELALDLA------------------TRVLRPGGDFLIKIFQGE 166
>gi|160900358|ref|YP_001565940.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Delftia acidovorans
SPH-1]
gi|226703294|sp|A9BML0.1|RLME_DELAS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|160365942|gb|ABX37555.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Delftia acidovorans
SPH-1]
Length = 217
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 32/181 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I +Q KLI+PG++V+DLG PGAW Q + L P G
Sbjct: 21 DPYVKAAQKDGYRARAAYKLKEIDEQLKLIRPGATVVDLGSTPGAWSQYVRRCLSP--EG 78
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVINLPSNQVRALSPKQKGF-----SVILSD 120
+V ++ + + + L + VQ + D P L+ Q+ V++SD
Sbjct: 79 AAVGALNGRIISLDLLPMEPIEGVQFILGDFREEP-----VLAQLQEALGGGKADVVVSD 133
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P++SG T DAA L AVD ++ +KP G LV+KL
Sbjct: 134 MAPNLSGNGTTDAARIALLVELAVDFSIHH------------------MKPEGALVVKLF 175
Query: 181 E 181
Sbjct: 176 H 176
>gi|421539978|ref|ZP_15986131.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 93004]
gi|421560976|ref|ZP_16006829.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM2657]
gi|402320262|gb|EJU55753.1| ribosomal RNA large subunit methyltransferase E [Neisseria
meningitidis 93004]
gi|402339456|gb|EJU74672.1| ftsJ-like methyltransferase family protein [Neisseria meningitidis
NM2657]
Length = 206
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I + KLIKPG+ + DLG APG+W QVA + G +
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINDKDKLIKPGTVLADLGSAPGSWSQVAAKLTG---SS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ ++ V + D R V A L N + +++ DM P
Sbjct: 75 GAVFALDILPMEAIGGVSFIQGDFRENDVLAQFETLLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVSDQVRSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|319786408|ref|YP_004145883.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoxanthomonas
suwonensis 11-1]
gi|317464920|gb|ADV26652.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudoxanthomonas
suwonensis 11-1]
Length = 227
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ G +R+A+KL ++ ++ +L+KPG +V+DLG APG W Q Q+LG +
Sbjct: 35 DPYVKKAQAEGLRSRAAYKLEELLERDRLLKPGMAVVDLGAAPGGWSQYVRQALG---DS 91
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ +D+ ++ V LH D R V + + +L Q ++LSDM P
Sbjct: 92 GRVIALDILEMPPLAGVEFLHGDFREDDVLSQLESLLDGQ---------PVDLVLSDMAP 142
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG+ D ++ L A++ A +N L+PGG +IKL +
Sbjct: 143 NMSGVDAVDQPRAMYLAELAMEFA----------DNH--------LRPGGAFLIKLFQ 182
>gi|17546244|ref|NP_519646.1| ribosomal RNA large subunit methyltransferase J [Ralstonia
solanacearum GMI1000]
gi|81505141|sp|Q8XZ79.1|RLME_RALSO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|17428541|emb|CAD15227.1| probable ribosomal rna large subunit methyltransferase j (cell
division protein ftsj) [Ralstonia solanacearum GMI1000]
Length = 221
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 43/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLAASPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R ++V Q+ + G
Sbjct: 77 KDGRID--GAIVAIDILPMEPVADVTFIQGDFREESV--------FQQLETIVLDATGGG 126
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ + DAA + AV+ A LKP
Sbjct: 127 KVDLVLSDMAPNLSGVASADAARMEHIAELAVEFA------------------QAHLKPE 168
Query: 173 GHLVIK 178
G L+IK
Sbjct: 169 GALLIK 174
>gi|421502068|ref|ZP_15949024.1| 23S rRNA methyltransferase J [Pseudomonas mendocina DLHK]
gi|400347352|gb|EJO95706.1| 23S rRNA methyltransferase J [Pseudomonas mendocina DLHK]
Length = 207
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ + N V +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTDDAVFARILEAIGENPV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGVRAADQPRAMYLCELALDLA------------------GRVLRPGGDFLIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|375109212|ref|ZP_09755462.1| 23S rRNA methyltransferase J [Alishewanella jeotgali KCTC 22429]
gi|374570771|gb|EHR41904.1| 23S rRNA methyltransferase J [Alishewanella jeotgali KCTC 22429]
Length = 209
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+LG +R+ FKL +IQ+Q KLI+ G +V+DLG APG+W Q G +
Sbjct: 20 DHFVQKAQKLGLRSRAFFKLEEIQQQDKLIRSGMTVVDLGSAPGSWSQYVA---GLVGQQ 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V+ D+ + V L D R + V +++ K V+LSDM P
Sbjct: 77 GTVIACDILPMDPLAGVAFLQGDFREEAVLHALLSRIGG---------KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG T D A S+ L A+D+ VLK G V+K+ +
Sbjct: 128 NMSGNDTTDQARSIYLVELALDMC------------------HKVLKQNGSFVVKVFQ 167
>gi|327301813|ref|XP_003235599.1| 21S rRNA (uridine(2791)-2'-O)-methyltransferase MRM2 [Trichophyton
rubrum CBS 118892]
gi|326462951|gb|EGD88404.1| cell division protein ftsj [Trichophyton rubrum CBS 118892]
Length = 291
Score = 75.9 bits (185), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 92/228 (40%), Gaps = 75/228 (32%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EA G +R+AFKLLQI +Y+L K G +V+DLG APG+W QVA P
Sbjct: 37 DAYTKEASIQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYAPGSWSQVAFNLTKPR--- 93
Query: 68 GSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN-----LPSNQVRALSPKQK--- 112
G VVG+D+ + P RVQ D + P +Q+ AL ++K
Sbjct: 94 GRVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNRGRPRSQLPALGEQEKPSP 153
Query: 113 ----------GF-----------------------------SVILSDMCPSVSGITTKDA 133
G+ VILSDM + SG ++D
Sbjct: 154 PTEPGAETDGGYIDLERSSSAHINKVDEAAPLPTKAKVGSVDVILSDMLMNTSGTKSRDH 213
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
S+EL A+D A S VLK GGH V K +
Sbjct: 214 LGSMELCNAALDFA------------------SNVLKEGGHFVCKYYQ 243
>gi|381152048|ref|ZP_09863917.1| 23S rRNA methylase [Methylomicrobium album BG8]
gi|380884020|gb|EIC29897.1| 23S rRNA methylase [Methylomicrobium album BG8]
Length = 205
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 78/144 (54%), Gaps = 16/144 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+LGY +R+ FKL +IQ + ++KPG ++DLG APG W Q A Q LG N
Sbjct: 17 DEYVKMAQKLGYRSRAVFKLKEIQDKDHILKPGMRIVDLGAAPGGWSQYAKQLLG---NP 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
++ +D+ ++ V + D R Q V ++ S + K +++SDM P
Sbjct: 74 CQIIALDILAIEPIDGVEFIQGDFREQAVFDQLMQ---------SLEGKRVDLVMSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLA 147
++SG D S+ LG A+++A
Sbjct: 125 NMSGSKGVDQPRSLYLGELALEMA 148
>gi|297180940|gb|ADI17143.1| 23S rRNA methylase [uncultured gamma proteobacterium HF0070_08D07]
Length = 209
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 39/186 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DFF ++AQ G V+R+ FKL ++ ++ L+KP S+L+LG APG W++ L +N
Sbjct: 17 DFFLKKAQGRGLVSRAYFKLQELDAKFDLLKPKQSILELGAAPGGWVRYIEDKLSGDEN- 75
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-------VRALSPKQKGFSVILSD 120
+ +D VK L A +I+ SN+ R L K+ ++LSD
Sbjct: 76 -LYIAVDPSPVKSSGL----------AKIISGKSNEPWVSQEIERILESKK--LDLVLSD 122
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P++SG+ D S E L AL + VN L PGG +V KL
Sbjct: 123 MAPNISGVRVVDDIASRE---------LAEVALNTAVN---------YLAPGGRMVAKLF 164
Query: 181 ESQDAQ 186
+ +AQ
Sbjct: 165 QGPEAQ 170
>gi|443473729|ref|ZP_21063751.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudomonas pseudoalcaligenes
KF707]
gi|442904603|gb|ELS29580.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudomonas pseudoalcaligenes
KF707]
Length = 207
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 92/180 (51%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DR 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ ++ V + D V + ++ + +++SDM P
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDEVFSRILEAIGDH---------PVDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D ++ L A+DLA S VL+PGG +IK+ + +
Sbjct: 125 NMSGVRAADQPRAMYLCELALDLA------------------SRVLRPGGDFLIKIFQGE 166
>gi|118575756|ref|YP_875499.1| 23S rRNA methylase [Cenarchaeum symbiosum A]
gi|158512513|sp|A0RV28.1|RLME_CENSY RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|118194277|gb|ABK77195.1| 23S rRNA methylase [Cenarchaeum symbiosum A]
Length = 196
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 28/178 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A+ GY +R+A+KL ++ K Y++I G +VLDLGCAPG+W+QVA + G N
Sbjct: 9 DHYRKMAREQGYRSRAAYKLKELNKAYRIIGAGFTVLDLGCAPGSWMQVAASAAG---NR 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D++ + + +++ DV + + ++ + ++ D+ P VSG
Sbjct: 66 GTVLGVDLEYAEELN-----HAESMRGDVED--ESLAETVAERLGRADAVICDLSPQVSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
+ D A + L A + +G VL P G+ V K+ + + A
Sbjct: 119 NWSVDHARQISLNYAAARI-MGR-----------------VLAPKGNAVFKVFDGEYA 158
>gi|118602395|ref|YP_903610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|143461559|sp|A1AW32.1|RLME_RUTMC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|118567334|gb|ABL02139.1| 23S rRNA Um-2552 2'-O-methyltransferase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 207
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 16/145 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +RS +KL+++ + K IK G VLDLG APG W QVA + +G
Sbjct: 17 DEFVKKAQKSGYRSRSVYKLIEVINKDKFIKLGDKVLDLGAAPGGWSQVAIKIVG---KS 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ +K V L D +V ++++ + K V+LSDM P
Sbjct: 74 GQVIASDILDIKPIDGVDFLRGDFTKDSVYETLLDITMS---------KKVDVVLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLAL 148
++SG ++ D S+ L A+D+A+
Sbjct: 125 NMSGQSSIDIPKSMYLCELALDMAI 149
>gi|261326555|emb|CBH09516.1| FtsJ cell division protein, putative [Trypanosoma brucei gambiense
DAL972]
Length = 905
Score = 75.5 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKL+Q+ ++Y + ++DL APG+W QVA + + P+ G
Sbjct: 14 DAYYRLAKDQGFRARSAFKLVQLNRKYDFLSKCRVLVDLCAAPGSWCQVAAKHM-PV--G 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VG+D+ V + + V+T D+ + ++ K++ ++ D P+V G
Sbjct: 71 SKIVGVDL--VPIAPIR---GVKTFVGDITEEKTKKIIMTYLKREPVDCVIHDGAPNVGG 125
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++D L + A LA S +L+PGG V K+ SQD
Sbjct: 126 VWSRDLFEQNSLVLHAAKLA------------------SKLLRPGGWFVTKVFRSQD 164
>gi|254875729|ref|ZP_05248439.1| ribosomal large subunit methyltransferase J [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254841750|gb|EET20164.1| ribosomal large subunit methyltransferase J [Francisella
philomiragia subsp. philomiragia ATCC 25015]
Length = 206
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y L K ++DLG APG W + + +G N
Sbjct: 17 DYYVLQANKLGYRSRASFKILEIQDKYNLFKQNMFIVDLGAAPGGWSEQVVKFIG---NN 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++ +D+ ++ P + S+D NQ+ K ++SDM P++SG
Sbjct: 74 GKLIALDLLEM-APIAGVEFIQGDFSSDETYERLNQL----INDKKIDCVISDMAPNLSG 128
Query: 128 ITTKDAALSVELGMRAVDLA 147
T D A S+ L A+D A
Sbjct: 129 NKTSDQARSIYLLELALDFA 148
>gi|84043710|ref|XP_951645.1| cell division protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|33348588|gb|AAQ15913.1| FtsJ cell division protein, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62359748|gb|AAX80179.1| FtsJ cell division protein, putative [Trypanosoma brucei]
Length = 905
Score = 75.5 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKL+Q+ ++Y + ++DL APG+W QVA + + P+ G
Sbjct: 14 DAYYRLAKDQGFRARSAFKLVQLNRKYDFLSKCRVLVDLCAAPGSWCQVAAKHM-PV--G 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VG+D+ V + + V+T D+ + ++ K++ ++ D P+V G
Sbjct: 71 SKIVGVDL--VPIAPIR---GVKTFVGDITEEKTKKIIMTYLKREPVDCVIHDGAPNVGG 125
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++D L + A LA S +L+PGG V K+ SQD
Sbjct: 126 VWSRDLFEQNSLVLHAAKLA------------------SKLLRPGGWFVTKVFRSQD 164
>gi|386287988|ref|ZP_10065154.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium BDW918]
gi|385278967|gb|EIF42913.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium BDW918]
Length = 207
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+ +KLL+IQ++ +LIKPG V+DLG APG W QVA +G +
Sbjct: 18 DQYVKMAQRDGYRSRACYKLLEIQEKDRLIKPGMCVVDLGSAPGGWSQVAAMLVG---HH 74
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G V+ D+ +++ S+ A V+ V D +++ A K +++SDM P++S
Sbjct: 75 GRVLASDI--LEMDSI---AGVEFVRGDFTEQEVIDELMAHLGNSKA-DLVISDMAPNMS 128
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G+ D S+ L +LAL A L VL+PGG K+ + +
Sbjct: 129 GMRDVDQPQSMYL----CELALDMAGL--------------VLRPGGSFATKIFQGE 167
>gi|86750307|ref|YP_486803.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris HaA2]
gi|123292402|sp|Q2IV68.1|RLME_RHOP2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|86573335|gb|ABD07892.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Rhodopseudomonas
palustris HaA2]
Length = 236
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 27/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KL +I +Y +K G +V+DLG APG W QVA + +G +
Sbjct: 33 DPYVAQAKRDGYRSRAAYKLTEIDDKYHFLKSGQAVVDLGAAPGGWSQVAAKRIGSANGR 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
G ++ ID+ ++ ++P V D ++ + +++R + G V++SDM +
Sbjct: 93 GKLIAIDLLEMGEIPG------VTFAQLDFLDSAAPDKLREMLGGD-GADVVMSDMAGNT 145
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+G D +R V L A AS VLKPGG V K+ +S
Sbjct: 146 TGHRKTDQ-------LRIVGLVESAAQFASE-----------VLKPGGIFVAKVFQS 184
>gi|389742249|gb|EIM83436.1| FtsJ-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 876
Score = 75.5 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYSFLESSRCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P+++ +VG+D+ +K +P RV T +AD+ + K V+L D
Sbjct: 68 -PVNS--LIVGVDLVPIKPIP------RVSTFAADITTSHCRNLLRGELKDWKADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 119 GAPNVGTAWVQDAYSQSELVLMSLKLAV 146
>gi|237798555|ref|ZP_04587016.1| FtsJ cell division protein [Pseudomonas syringae pv. oryzae str.
1_6]
gi|422644505|ref|ZP_16707643.1| FtsJ cell division protein [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330958057|gb|EGH58317.1| FtsJ cell division protein [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|331021408|gb|EGI01465.1| FtsJ cell division protein [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 216
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ K+I+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|294495192|ref|YP_003541685.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanohalophilus mahii
DSM 5219]
gi|292666191|gb|ADE36040.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanohalophilus mahii
DSM 5219]
Length = 264
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 28/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY +R+A+KL QI K++ +I+ S V+DLG APG WL+VA +
Sbjct: 7 DTYYWRAKAEGYRSRAAYKLQQINKKFNVIREDSDVVDLGAAPGGWLEVAREL-----TK 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
VVG+D+ ++K R+ + D+ + + + G ++ D P++SG
Sbjct: 62 RKVVGVDILRIKPMD-----RITIIRGDITREETVSQIKEAVGEDGADAVICDAAPNLSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D A S+ L A++ A + +LKP G+ V+K+ +
Sbjct: 117 NWNLDHARSIALAESALECA------------------TRILKPQGNFVVKVFQ 152
>gi|19114041|ref|NP_593129.1| rRNA methyltransferase Spb1 (predicted) [Schizosaccharomyces pombe
972h-]
gi|9910811|sp|O42832.2|SPB1_SCHPO RecName: Full=AdoMet-dependent rRNA methyltransferase spb1;
AltName: Full=2'-O-ribose RNA methyltransferase;
AltName: Full=S-adenosyl-L-methionine-dependent
methyltransferase
gi|4106665|emb|CAA22605.1| rRNA methyltransferase Spb1 (predicted) [Schizosaccharomyces pombe]
Length = 802
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 8/143 (5%)
Query: 5 GAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL 64
G D +Y+ A+ GY +R+AFKL+Q+ ++Y ++ ++DL APG WLQVA ++ P
Sbjct: 11 GRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASKTCKP- 69
Query: 65 DNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
G +VG+D+ +K P +C V+ +++D +Q+R K V+L D P+
Sbjct: 70 --GSLIVGVDLAPIK-PIPNCHTFVEDITSDKCR---SQLRGYLKTWKA-DVVLHDGAPN 122
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
V +DA +L + ++ LA
Sbjct: 123 VGSAWLQDAYGQAQLVLMSMKLA 145
>gi|28871632|ref|NP_794251.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213966655|ref|ZP_03394806.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato T1]
gi|301383165|ref|ZP_07231583.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato Max13]
gi|302063400|ref|ZP_07254941.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato K40]
gi|302133773|ref|ZP_07259763.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|422300038|ref|ZP_16387581.1| FtsJ cell division protein [Pseudomonas avellanae BPIC 631]
gi|422590240|ref|ZP_16664897.1| FtsJ cell division protein [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|422658020|ref|ZP_16720457.1| FtsJ cell division protein [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|81729678|sp|Q87WP7.1|RLME_PSESM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|28854884|gb|AAO57946.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213928505|gb|EEB62049.1| FtsJ cell division protein [Pseudomonas syringae pv. tomato T1]
gi|330877241|gb|EGH11390.1| FtsJ cell division protein [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|331016640|gb|EGH96696.1| FtsJ cell division protein [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|407987888|gb|EKG30565.1| FtsJ cell division protein [Pseudomonas avellanae BPIC 631]
Length = 216
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ K+I+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKIIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|333368156|ref|ZP_08460370.1| ribosomal RNA large subunit methyltransferase J [Psychrobacter sp.
1501(2011)]
gi|332977760|gb|EGK14520.1| ribosomal RNA large subunit methyltransferase J [Psychrobacter sp.
1501(2011)]
Length = 210
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KLL+I ++ LIK G +V+DLG APG+W QVA + +G +
Sbjct: 24 DHYVQLAQKEGYRARAAYKLLEINEKTNLIKKGMTVVDLGSAPGSWSQVAGRLVG---DE 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMC 122
G ++ D+ + V + D R + V ++ + QV V+LSDM
Sbjct: 81 GILIASDILPMDALENVTFIQGDFREEEVFDKLMGEVGDRQV----------DVVLSDMA 130
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+ SG T D + L AVD AL VL GG LV+K+ +
Sbjct: 131 PNTSGHTAVDQPRMIYLCELAVDFAL------------------RVLPKGGSLVMKMFQG 172
Query: 183 Q 183
+
Sbjct: 173 E 173
>gi|374620624|ref|ZP_09693158.1| 23S rRNA methylase [gamma proteobacterium HIMB55]
gi|374303851|gb|EHQ58035.1| 23S rRNA methylase [gamma proteobacterium HIMB55]
Length = 207
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 16/145 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ GY +R+ +KLL++ + K IKPG +V+DLG APG W QVA Q +G +
Sbjct: 18 DVYVQRAQAEGYRSRACYKLLELNDKDKFIKPGMTVVDLGSAPGGWSQVAAQLVG---HK 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V + D Q+V ++ + + V SV+LSDM P
Sbjct: 75 GRVIASDILPMDAVAGVDFIQGDFTEQSVFDEIQAVIGDSVP---------SVVLSDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLAL 148
++SGI + D ++ L A+D+A+
Sbjct: 126 NMSGIVSVDQPKAMYLVELALDMAV 150
>gi|56416831|ref|YP_153905.1| cell division protein [Anaplasma marginale str. St. Maries]
gi|222475196|ref|YP_002563612.1| cell division protein FtsJ [Anaplasma marginale str. Florida]
gi|254995031|ref|ZP_05277221.1| cell division protein (ftsJ) [Anaplasma marginale str. Mississippi]
gi|255003177|ref|ZP_05278141.1| cell division protein (ftsJ) [Anaplasma marginale str. Puerto Rico]
gi|255004308|ref|ZP_05279109.1| cell division protein (ftsJ) [Anaplasma marginale str. Virginia]
gi|269958781|ref|YP_003328569.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaplasma centrale str.
Israel]
gi|81359063|sp|Q5PAN0.1|RLME_ANAMM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|254809546|sp|B9KIP4.1|RLME_ANAMF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56388063|gb|AAV86650.1| cell division protein [Anaplasma marginale str. St. Maries]
gi|222419333|gb|ACM49356.1| cell division protein (ftsJ) [Anaplasma marginale str. Florida]
gi|269848611|gb|ACZ49255.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Anaplasma centrale str.
Israel]
Length = 201
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 32/176 (18%)
Query: 14 AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGG--SVV 71
A++ GY +RSA+KL+ I ++KL++ G VLDLG PG W QVA + + GG VV
Sbjct: 3 AKKHGYRSRSAYKLIDIDCKFKLLQRGRYVLDLGSCPGGWAQVAAERVA---EGGKAHVV 59
Query: 72 GIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITT 130
+D+ + ++P+ V V DV + P AL ++ F V+LSDM P G
Sbjct: 60 AVDMAPMERIPN------VDFVQCDVEHSPELLRAALQDRK--FDVVLSDMAPKSCGHRQ 111
Query: 131 KDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A + L A+DLA+ L+ GG V K+L+ + Q
Sbjct: 112 VDHANIINLCEMALDLAV------------------EFLRSGGSFVTKILQGEYEQ 149
>gi|242763691|ref|XP_002340625.1| rRNA methyltransferase Spb1, putative [Talaromyces stipitatus ATCC
10500]
gi|218723821|gb|EED23238.1| rRNA methyltransferase Spb1, putative [Talaromyces stipitatus ATCC
10500]
Length = 798
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA + +
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMP 67
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 68 A---GSLIVGVDLAPIKPIP------RVITFQSDITTDKCRSTLRSHVKHLKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L+ GG V K+
Sbjct: 119 APNVGTAWVQDAFTQAELVLQSMKLA------------------TEFLREGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|399522684|ref|ZP_10763347.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399109548|emb|CCH39908.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 209
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+A+KL++I ++ KLI+PG ++DLG APG W Q+A + +G
Sbjct: 17 DPYVKQAQKDGYRSRAAYKLIEINEKDKLIRPGMLMMDLGSAPGGWSQIAGRMVGAT--- 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V + D V +++L + P +I+SD+ P
Sbjct: 74 GRVIASDILPMDSLDNVDFIQGDFTDDKVFQQILDLLDGR----RP-----DLIVSDIAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D A S+ L +D+A VLKPGG+ V K+ + +
Sbjct: 125 NISGVGVADQAASMYLVELVLDMA------------------RQVLKPGGNFVAKVFQGE 166
>gi|406708460|ref|YP_006758812.1| FtsJ-like methyltransferase [alpha proteobacterium HIMB59]
gi|406654236|gb|AFS49635.1| FtsJ-like methyltransferase [alpha proteobacterium HIMB59]
Length = 199
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY+ A++ ++R+ +KL +I K++++IK S VLD+GC PG W Q G
Sbjct: 11 DHFYQLAKKNDLISRAYYKLEEIDKKHQIIKKSSKVLDIGCCPGGWTQYVLNKSG----N 66
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALS----PKQKGFSVILSDMCP 123
SVVG+D+ L + + + N N+ +S K F VI+SD+ P
Sbjct: 67 QSVVGVDI-------LPIEEKFDD-NFTFYNFDLNEFDKISDLFVSKNYCFDVIISDIAP 118
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SG D A S L + LKPGG ++K + +
Sbjct: 119 NTSGNQFLDQANSYNLSFLSFQFI------------------KSFLKPGGFFLVKNFQGE 160
Query: 184 DAQ 186
D +
Sbjct: 161 DTE 163
>gi|402701789|ref|ZP_10849768.1| 23S rRNA methyltransferase J [Pseudomonas fragi A22]
Length = 216
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ ++I+PG +V+DLG APG W QV + +G
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQERDRIIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDHVLAQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLAAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|225075313|ref|ZP_03718512.1| hypothetical protein NEIFLAOT_00316 [Neisseria flavescens
NRL30031/H210]
gi|224953488|gb|EEG34697.1| hypothetical protein NEIFLAOT_00316 [Neisseria flavescens
NRL30031/H210]
Length = 206
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSWSQVAAKLVGKT--- 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ + V + D R V L N + +++ DM P
Sbjct: 75 GAVFALDILPMDAIEGVSFIQGDFREDAVLEQFEALLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVTDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|365883861|ref|ZP_09422969.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 375]
gi|365287657|emb|CCD95500.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 375]
Length = 231
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+ +KLL+I +Y L+KPG +V+DLG APG W Q+A + +G
Sbjct: 33 DPYVAQAKRDGYRSRATYKLLEIDDKYHLLKPGMTVVDLGAAPGGWSQIAARRVGAEAGK 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV ID+ ++ ++P + A++ + D ++RA+ + V++SDM + +
Sbjct: 93 GKVVAIDLLEMGEIPGVTF-AQLDFHAQDA----PEKLRAMMGGRA--DVVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L A A VLKPGG + K +S
Sbjct: 146 GHRKTDQ-------LRIVGLVELAAHFAGE-----------VLKPGGSFLAKTFQS 183
>gi|261380964|ref|ZP_05985537.1| ribosomal RNA large subunit methyltransferase J [Neisseria subflava
NJ9703]
gi|284796223|gb|EFC51570.1| ribosomal RNA large subunit methyltransferase J [Neisseria subflava
NJ9703]
Length = 206
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSWSQVAAKLVGKT--- 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ + V + D R V L N + +++ DM P
Sbjct: 75 GAVFALDILPMDAIEGVSFIQGDFREDAVLEQFEALLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A S LK GG ++K+ +
Sbjct: 126 NMSGNAVTDQARSFYLCELALDFA------------------SQHLKTGGSFLVKVFQ 165
>gi|383850870|ref|XP_003700997.1| PREDICTED: putative rRNA methyltransferase 3-like [Megachile
rotundata]
Length = 831
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 30/181 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY +R+AFKL+Q+ ++++ ++ +DL APG W+QVA Q++ P+ +
Sbjct: 13 DKYYHLAKETGYRSRAAFKLIQLNRKFEFLQKSRVCIDLCAAPGGWMQVARQNM-PVSS- 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS--VILSDMCPSV 125
VVG+D+ +K P C + V+ ++ D + A+S + K + V+L D P+V
Sbjct: 71 -IVVGVDLFPIK-PIPGCISLVEDITTDKCRV------AISRELKTWKADVVLHDGAPNV 122
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
DA V L + A+ +A + L+PGG V K+ S+D
Sbjct: 123 GKNWLHDAYQQVSLTLSALKMA------------------TYFLRPGGWFVTKMFRSKDY 164
Query: 186 Q 186
Q
Sbjct: 165 Q 165
>gi|268575662|ref|XP_002642810.1| Hypothetical protein CBG21206 [Caenorhabditis briggsae]
Length = 210
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 19/163 (11%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
+ D F +A+ Y ARSAFKL++I +++K ++PG +V+D+GCAPG+WLQV
Sbjct: 9 STDEFTVKAREHNYRARSAFKLIEINEKFKFLRPGITVVDVGCAPGSWLQVVVDKCP--- 65
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVR---ALSPKQKGFSVILSDMC 122
G +G+D++ V +P D Q +DV + P Q + L +Q V+LSDM
Sbjct: 66 -NGYALGLDLQNV-LPIRGADILSQ---SDVTS-PEIQAKIREKLQMRQGTVDVVLSDMA 119
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTD 165
P+ +G + D +R +DL L S N +++ +
Sbjct: 120 PNPTGDSETDH-------LRLIDLCRTVFRLFSKENTVENAFE 155
>gi|71279764|ref|YP_270127.1| 23S rRNA methyltransferase J [Colwellia psychrerythraea 34H]
gi|83305657|sp|Q47YJ3.1|RLME_COLP3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|71145504|gb|AAZ25977.1| ribosomal RNA large subunit methyltransferase J [Colwellia
psychrerythraea 34H]
Length = 209
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQRLG +R+ FKL +I + +LIKPG V+DLG APG W + A + +G +
Sbjct: 20 DEYVKKAQRLGLRSRAVFKLEEINIKDRLIKPGMKVVDLGAAPGGWSEYAVKVVG---DK 76
Query: 68 GSVVGIDV----KKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ V V L D R + V ++ + K V++SDM
Sbjct: 77 GQVVACDILPMDAIVGVDFLEGDFREEEVLDALLTRING---------KNIDVVMSDMAA 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+++G + D+A S+ L A+D+ S VLKP G V+K+ +
Sbjct: 128 NMTGNESADSARSMYLVELALDMC------------------SQVLKPNGAFVVKVFQ 167
>gi|422629062|ref|ZP_16694268.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330937938|gb|EGH41725.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 195
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 36/175 (20%)
Query: 14 AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGI 73
AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G G ++
Sbjct: 2 AQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQGRLIAS 58
Query: 74 DVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMCPSVSGI 128
D+ ++ V + D + ++ N QV +++SDM P++SG+
Sbjct: 59 DILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQV----------DLVISDMAPNMSGL 108
Query: 129 TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 109 SAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQGE 145
>gi|319899272|ref|YP_004159365.1| cell division protein ftsJ [Bartonella clarridgeiae 73]
gi|319403236|emb|CBI76795.1| cell division protein ftsJ [Bartonella clarridgeiae 73]
Length = 238
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 76/167 (45%), Gaps = 30/167 (17%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
GY +RSA+KL++I ++YK+ K G ++DLG APG W QVA + D SVVGID
Sbjct: 53 GYRSRSAYKLIEIDERYKIFKKGQKIIDLGAAPGGWCQVAAHKVESSDQKPSVVGIDYLP 112
Query: 78 VK-VPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAA 134
+ +P V + D + N P + AL + ++LSDM +G D
Sbjct: 113 MDPLPG------VVVLEMDFLHENAPQKLMNALGEQP---DIVLSDMAAPTTGHRQTDHL 163
Query: 135 LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+V L A D AL LK GGH + K +
Sbjct: 164 RTVYLCEMAADFAL------------------SFLKSGGHFLAKAFQ 192
>gi|296445113|ref|ZP_06887073.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylosinus
trichosporium OB3b]
gi|296257287|gb|EFH04354.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylosinus
trichosporium OB3b]
Length = 235
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 34/179 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KLL++ +++ L +PG + DLG APG W Q+A + +G
Sbjct: 39 DPYVAQAKRDGYRSRAAYKLLELDERFHLFRPGQRIADLGAAPGGWSQIAARKVGAGQGK 98
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINL-----PSNQVRALSPKQKGFSVILSDMC 122
G VVGID+ +++ P VQ V V++ P L G ++SDM
Sbjct: 99 GRVVGIDLLEME-P-------VQGVEFTVMDFNDADAPERIKEMLGGPADG---VMSDMA 147
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ +G D V L AV+ A VL PGG V K+L+
Sbjct: 148 ANATGHKQTDHLKIVALAELAVEFA------------------REVLAPGGFFVAKVLQ 188
>gi|407866848|gb|EKG08418.1| FtsJ cell division protein, putative [Trypanosoma cruzi]
Length = 910
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKL+Q+ ++Y + G ++DL APG W QVA + + P+ G
Sbjct: 14 DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKGRVLVDLCAAPGGWCQVAAKHM-PV--G 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VG+D+ V + + V+T D+ + + ++ K++ ++ D P+V G
Sbjct: 71 SKIVGVDL--VPIAPIR---GVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGG 125
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++D L + A +A + +LKP G V K+ SQD
Sbjct: 126 VWSRDLFEQNALVLHAAKMA------------------ASMLKPSGWFVTKVFRSQD 164
>gi|354467826|ref|XP_003496369.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Cricetulus griseus]
Length = 341
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 31/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A+ Y RSAFKL+ I +++ +++PG VLD G APGAW QVA Q +
Sbjct: 137 DPFVKAAKVESYRCRSAFKLMAINEKHHILRPGLRVLDCGAAPGAWSQVAVQRVNATGTD 196
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALS--PKQKGFSVILSD 120
G V+G+D+ + + ADV + P + R L P++K VILSD
Sbjct: 197 CSSPVGYVLGVDLLHI----FPLEGATFLCPADVTD-PGTRQRILDLLPRRKA-DVILSD 250
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
M P+ +GI D + L + VD+A+ +L PGG L+ K
Sbjct: 251 MAPNATGIRDLDHDRLISLCLTLVDMAV------------------DILHPGGTLLCK 290
>gi|397640151|gb|EJK73961.1| hypothetical protein THAOC_04392, partial [Thalassiosira oceanica]
Length = 391
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ GY +R+AFKL QI ++++++ +VLDL APG W QV +SL P D
Sbjct: 14 DKYYRLAKEQGYRSRAAFKLTQINRKFRVLNGARTVLDLCAAPGGWTQVCARSL-PNDPS 72
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
++V +DV ++ P + V T+ D+ + + G V+L D P+V
Sbjct: 73 TTIVAVDVHPIR-PMRN----VMTLVGDITTEKTKAAIRAELQGAGCDVVLCDGAPNVGA 127
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
KDA EL + + A + LK G V KL S D
Sbjct: 128 SYDKDAYEQNELALHCLKCA------------------TEHLKRHGTFVTKLYRSAD 166
>gi|403217673|emb|CCK72166.1| hypothetical protein KNAG_0J00840 [Kazachstania naganishii CBS
8797]
Length = 311
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 21/178 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR+A+ LGY ARSAFKLLQ+ +++ + V+DL APG+W QV + + +
Sbjct: 10 DLYYRKAKELGYRARSAFKLLQLNEEFHFLDDLERVVDLCAAPGSWSQVLSRKMFD-EAE 68
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G V G + V + + V T AD+ + + +++ L +K + SD P V+
Sbjct: 69 GDVQGKKIVAVDLQPMSPIDNVTTFQADITHPKTLSRILELFGNEKA-DFVCSDGAPDVT 127
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L M A+ L + VLKP G+ V K+ +D
Sbjct: 128 GLHDLDEYVQQQLIMSALQLT------------------TCVLKPHGNFVAKIFRGRD 167
>gi|319407620|emb|CBI81272.1| cell division protein ftsJ [Bartonella sp. 1-1C]
Length = 240
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 30/167 (17%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
GY +RSA+KL++I ++YK+ K G ++DLG APG W QVA + + + SVVGID
Sbjct: 53 GYRSRSAYKLIEIDERYKIFKKGQKIIDLGAAPGGWCQVAARKVESSNQKPSVVGIDYLP 112
Query: 78 VK-VPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAA 134
+ +P V + D + N P + AL + ++LSDM +G D
Sbjct: 113 MDPLPG------VVVLEMDFLHENAPRKLMNALGEQP---DIVLSDMAAPTTGHRKTDHL 163
Query: 135 LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+V L A D AL VLK GGH + K +
Sbjct: 164 RTVYLCEMAADFAL------------------SVLKSGGHFLAKAFQ 192
>gi|421496523|ref|ZP_15943751.1| Ribosomal RNA large subunit methyltransferase E [Aeromonas media
WS]
gi|407184511|gb|EKE58340.1| Ribosomal RNA large subunit methyltransferase E [Aeromonas media
WS]
Length = 209
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+LG +R+ FK+ +IQ + KL+KPG +V+DLG APG W Q A +G +
Sbjct: 20 DHYVKKAQKLGLRSRAVFKIDEIQGKDKLLKPGMTVVDLGAAPGGWSQFAIDQVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R +TV A ++ + P + V++SDM P
Sbjct: 77 GRVIACDILPMDSIAGVDFLQGDFREETVLAALLA-------RVGPDK--VDVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D A S+ L A+D+ + VL+ G V+K+ + +
Sbjct: 128 NMSGTQQVDQARSMYLIELALDMC------------------NQVLRSNGSFVVKVFQGE 169
>gi|422650884|ref|ZP_16713684.1| FtsJ cell division protein [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330963967|gb|EGH64227.1| FtsJ cell division protein [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 216
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 92/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ K+I+PG +V+DLG APG W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKVIRPGMTVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|110833182|ref|YP_692041.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
borkumensis SK2]
gi|123345833|sp|Q0VSS9.1|RLME_ALCBS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|110646293|emb|CAL15769.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax
borkumensis SK2]
Length = 208
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 34/175 (19%)
Query: 13 EAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVG 72
+AQ GY +R++FKLL++ ++ +L +PG +VLDLG APG W QVA Q +G G+V+
Sbjct: 25 KAQEQGYRSRASFKLLEMNEKDRLFRPGMAVLDLGAAPGGWSQVAGQLIG---GRGTVIA 81
Query: 73 IDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI 128
D+ + V + D R + + ++ +Q RA +++SDM P++SG
Sbjct: 82 SDILAMDALPDVTFIEGDFREEVIYEQILMALGDQ-RA--------DLVMSDMAPNMSGN 132
Query: 129 TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D ++ L A+D+A VL+P G ++K+ + +
Sbjct: 133 SAVDQPRAMYLAELALDMA------------------ERVLEPDGVFLVKVFQGE 169
>gi|212529376|ref|XP_002144845.1| rRNA methyltransferase Spb1, putative [Talaromyces marneffei ATCC
18224]
gi|210074243|gb|EEA28330.1| rRNA methyltransferase Spb1, putative [Talaromyces marneffei ATCC
18224]
Length = 794
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA + +
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMP 67
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 68 A---GSLIVGVDLAPIKPIP------RVITFQSDITTDKCRSTLRSHVKHLKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L+ GG V K+
Sbjct: 119 APNVGTAWVQDAFTQAELVLQSMKLA------------------TEFLREGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|422682149|ref|ZP_16740416.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|331011490|gb|EGH91546.1| ribosomal RNA large subunit methyltransferase J [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
Length = 195
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 36/175 (20%)
Query: 14 AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGI 73
AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG APG W QV + +G G ++
Sbjct: 2 AQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAAPGGWSQVTSRLIG---GQGRLIAS 58
Query: 74 DVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMCPSVSGI 128
D+ ++ V + D + ++ N QV +++SDM P++SG+
Sbjct: 59 DILEMDSIPDVTFIQGDFTEDKILEQILEAVGNTQV----------DLVISDMAPNMSGL 108
Query: 129 TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 109 SAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQGE 145
>gi|288941981|ref|YP_003444221.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Allochromatium vinosum
DSM 180]
gi|288897353|gb|ADC63189.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Allochromatium vinosum
DSM 180]
Length = 206
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + Q GY +R+A+KLL+IQ++ ++KPG V+DLG APG+W Q+A Q +GP
Sbjct: 17 DPYVKRVQVDGYRSRAAYKLLEIQEKDPILKPGMRVVDLGAAPGSWSQIARQLVGP---E 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV +D+ ++ V L D R V + + + +P V+LSDM P
Sbjct: 74 GCVVALDILPMEPLPGVVVLQGDFRDDEVLSRL-----REAIGEAP----LDVVLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+++G D ++ L A++LA LKPGG LV K+ +
Sbjct: 125 NITGTMVVDQTRAMYLVELALELA------------------RSHLKPGGTLVTKVFQ 164
>gi|53803869|ref|YP_114286.1| ribosomal RNA large subunit methyltransferase J [Methylococcus
capsulatus str. Bath]
gi|81681781|sp|Q607B2.1|RLME_METCA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|53757630|gb|AAU91921.1| ribosomal RNA large subunit methyltransferase J [Methylococcus
capsulatus str. Bath]
Length = 210
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R AQ GY +R+ FKL+++ + +L PG++V+DLG APG W Q A + +G
Sbjct: 18 DEYVRLAQEKGYRSRAVFKLMELDEHDRLFAPGTTVIDLGAAPGGWSQYAARRVGA---S 74
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ +D+ ++ +P V V D ++ + + V+LSDM P++S
Sbjct: 75 GRVLALDMLPMEPLPG------VTVVQGDFLDDAVFHAMLEAIGGRRVDVVLSDMAPNMS 128
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
G D S+ L A DLA VL P G V+KL + + Q
Sbjct: 129 GNRNVDQPRSMYLAELAFDLA------------------ERVLGPKGSFVVKLFQGEGFQ 170
>gi|241758799|ref|ZP_04756912.1| ribosomal RNA large subunit methyltransferase J [Neisseria
flavescens SK114]
gi|241321007|gb|EER57220.1| ribosomal RNA large subunit methyltransferase J [Neisseria
flavescens SK114]
Length = 206
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W QVA + +G
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINQKDKLIKPGTVLADLGSAPGSWSQVAAKLVGKT--- 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+V +D+ + V + D R V L N + +++ DM P
Sbjct: 75 GAVFALDILPMDAIEGVSFIQGDFREDAVLEQFEALLDN---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A LK GG ++K+ +
Sbjct: 126 NMSGNAVTDQARSFYLCELALDFAFQH------------------LKTGGSFLVKVFQ 165
>gi|387130166|ref|YP_006293056.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Methylophaga sp. JAM7]
gi|386271455|gb|AFJ02369.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase J [Methylophaga sp. JAM7]
Length = 205
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 16/144 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A + GY +R+ FKL +I ++ KL++PG V+DLG APG W A +G
Sbjct: 17 DVYVKKAHQKGYRSRATFKLDEINQKDKLLRPGMVVVDLGAAPGGWSDYALHQVG---ES 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+VV +D+ + V + D R QTV + + ++Q ++LSDM P
Sbjct: 74 GTVVALDILPMTPLTGVHFIEGDFREQTVLDALEEVVADQ---------SIDLVLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLA 147
++SG+ D A S+ L A+D A
Sbjct: 125 NLSGVDAIDQAGSMYLVELALDFA 148
>gi|121607215|ref|YP_995022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
eiseniae EF01-2]
gi|143462104|sp|A1WEE7.1|RLME_VEREI RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|121551855|gb|ABM56004.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Verminephrobacter
eiseniae EF01-2]
Length = 242
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A++ GY AR+A+KL +I +Q LI+PG +V+DLG PGAW Q + +
Sbjct: 21 DPYVQRARKEGYRARAAYKLREIDEQLGLIRPGYTVVDLGATPGAWSQYLRRRMA---AE 77
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+++ +D+ ++ V LH D R V + + +V V++SDM P
Sbjct: 78 GAIIALDILPMEPLEGVTCLHGDFRAPDVQQRLEQALAGRV---------VDVVVSDMAP 128
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SGI DAA +L V+LA+ + LKP G L++KL
Sbjct: 129 NLSGIACADAARMADL----VELAV--------------AFSCRHLKPDGALLVKLFH 168
>gi|332535916|ref|ZP_08411626.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
haloplanktis ANT/505]
gi|332034703|gb|EGI71252.1| ribosomal RNA large subunit methyltransferase J [Pseudoalteromonas
haloplanktis ANT/505]
Length = 209
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL ++Q + KL++PG +V+DLG APG+W Q + +G +
Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEVQNRDKLLRPGMTVVDLGAAPGSWSQYLAEKVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V+N ++ K V+LSDM P
Sbjct: 77 GQVIACDILPMDSLAGVDFLQGDFREEA----VLNALLKRIDG-----KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D A S+ L A+D+ S VLK G ++K+ + +
Sbjct: 128 NMSGNNSVDQAGSMYLVELALDMC------------------SQVLKKNGAFIVKVFQGE 169
>gi|159044221|ref|YP_001533015.1| ribosomal RNA methyltransferase [Dinoroseobacter shibae DFL 12]
gi|157911981|gb|ABV93414.1| ribosomal RNA methyltransferase [Dinoroseobacter shibae DFL 12]
Length = 257
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 33/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A+R GY R+AFK+L+I ++++ + PG+ V+DLGCAPG W QVA + + L
Sbjct: 53 DPYVQKAKREGYRGRAAFKILEIDERFRFLVPGARVVDLGCAPGGWCQVAVRRVNALGEK 112
Query: 68 -----GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSD 120
G V+G+D+K++ VP +T D + ++ QV+A + V++SD
Sbjct: 113 SGKAQGRVLGVDLKEIDPVPG------AETHVLDFMEDGADAQVKAWLGGKA--DVVMSD 164
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M + SG D +R V L A LA VL+ GG V K+L
Sbjct: 165 MAAASSGHKQTDH-------LRIVALCEAAAHLAFD-----------VLEEGGTFVAKVL 206
>gi|90409010|ref|ZP_01217140.1| hypothetical protein PCNPT3_10771 [Psychromonas sp. CNPT3]
gi|90309895|gb|EAS38050.1| hypothetical protein PCNPT3_10771 [Psychromonas sp. CNPT3]
Length = 222
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 34/181 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+ +EA RLG +R+ FKL +I K+ KLI+ G +V+DLG APG+W Q ++G +
Sbjct: 33 DFYVKEANRLGLRSRAVFKLDEINKKDKLIRSGMTVVDLGAAPGSWSQWCVDTVG---SR 89
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++ + + P + V+LSDM P
Sbjct: 90 GKVIACDILAMDSIAGVDFLQGDFRDEAVLHALL-------KRIGPHK--LDVVLSDMSP 140
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG +AA+ M V+LAL S VLK G ++K+
Sbjct: 141 NMSG----NAAMDQPKSMYLVELALEMC--------------SDVLKKDGSFIVKVFMGA 182
Query: 184 D 184
D
Sbjct: 183 D 183
>gi|90412478|ref|ZP_01220481.1| 23S rRNA methylase [Photobacterium profundum 3TCK]
gi|90326515|gb|EAS42921.1| 23S rRNA methylase [Photobacterium profundum 3TCK]
Length = 209
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ GY +R+ FK+ +IQ + KL+KPG +V+DLG APG W Q A + +G +
Sbjct: 20 DKYVQEAQKRGYRSRAIFKIEEIQNKDKLLKPGMTVVDLGAAPGGWSQYAAEVVG---DE 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTV-SADVINLPSNQVRALSPKQKGFSVILSDMC 122
G V+ D+ + V L D R + V SA + + N V V+LSDM
Sbjct: 77 GQVIACDILSMDSLPGVSFLQGDFREEAVLSALLERIQPNMV----------DVVLSDMA 126
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+D+ VL P G +K+ +
Sbjct: 127 PNMSGNLASDQPRAMYLVELALDMC------------------RQVLAPNGSFAVKVFQG 168
Query: 183 Q 183
+
Sbjct: 169 E 169
>gi|388455130|ref|ZP_10137425.1| 23S rRNA methyltransferase J [Fluoribacter dumoffii Tex-KL]
Length = 206
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL ++ ++ L+KPG +V+DLG APG W Q + L
Sbjct: 17 DVYVKKAQAEGYRSRAVYKLKEVDEKESLLKPGMTVVDLGAAPGGWTQYVSER---LQGR 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ +D+ + V + D R V ++++ ++G ++LSDM P
Sbjct: 74 GHIIALDILPMDSLPDVDFILGDFREDEVLRKLVDIIP---------ERGVDLLLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG T A+ + M V+LA AA +L+PGG ++IK+
Sbjct: 125 NMSGTT----AIDIPRAMYLVELAFDFAA--------------KMLRPGGSMLIKIFH 164
>gi|344170772|emb|CCA83204.1| 23S rRNA methyltransferase [blood disease bacterium R229]
Length = 221
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 87/186 (46%), Gaps = 43/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG APG+W Q L
Sbjct: 17 DPYVKLAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGAAPGSWSQYVRNKLADSPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-- 113
G +D G++V ID+ ++ V + D R + V Q+ + G
Sbjct: 77 KDGRID--GAIVAIDILPMEPVSDVTFIQGDFREEAV--------YQQLEKIVLDTTGGG 126
Query: 114 -FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
++LSDM P++SG+ DAA + AV+ A LKP
Sbjct: 127 KVDLVLSDMAPNLSGVAAADAARMEHIAELAVEFA------------------RAHLKPE 168
Query: 173 GHLVIK 178
G L+IK
Sbjct: 169 GALLIK 174
>gi|406697378|gb|EKD00640.1| RNA methyltransferase [Trichosporon asahii var. asahii CBS 8904]
Length = 930
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 88/185 (47%), Gaps = 30/185 (16%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
SG G D FYR A+ GY ARSAFKL+ + ++Y L+ +DL APG WLQVA +
Sbjct: 8 SGKGRLDKFYRLAKEQGYRARSAFKLIHLNRKYDLLSNAKCCIDLCAAPGGWLQVAEKY- 66
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILS 119
+ G ++G+D+ +K P H V AD I P N++R K ++L
Sbjct: 67 --MPKGSLIIGVDLMPIK-PLPH----VIAFQAD-ITTPKCRNELRQHMHDWKA-DLVLH 117
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
D P+V +DA EL ++++ LA + L GG+ V K+
Sbjct: 118 DGAPNVGAAWVQDAFSQNELVLQSLRLA------------------TEFLVKGGNFVTKV 159
Query: 180 LESQD 184
SQD
Sbjct: 160 FRSQD 164
>gi|374852419|dbj|BAL55352.1| cell division protein FtsJ [uncultured gamma proteobacterium]
Length = 206
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R AQ GY +R+ FKL +IQ + +++ PG +V+DLG APG W Q A + P G
Sbjct: 17 DAYVRLAQAQGYRSRAVFKLQEIQARDRILAPGMTVVDLGAAPGGWSQFAADQIKP---G 73
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +V +D+ + +P V + D + Q +++ +V+LSD+ P++S
Sbjct: 74 GKIVAVDILPMDPLPG------VTFLQGDFTEEQTWQRLKAVLQERPVNVVLSDLAPNLS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G + D A +V L A+D A
Sbjct: 128 GNRSVDQARAVHLAELALDTA 148
>gi|344198778|ref|YP_004783104.1| ribosomal RNA large subunit methyltransferase E [Acidithiobacillus
ferrivorans SS3]
gi|343774222|gb|AEM46778.1| Ribosomal RNA large subunit methyltransferase E [Acidithiobacillus
ferrivorans SS3]
Length = 219
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 33/176 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A + GY +R+++KLL+IQ++ LI+PG VLD+G APG W QVA +G
Sbjct: 17 DPFVQRAMKEGYRSRASYKLLEIQQKDHLIRPGMRVLDVGAAPGGWTQVAAPLIG---RK 73
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPS 124
G +V +D L D A + DV + R P G +I+SDM P+
Sbjct: 74 GRLVAVD-------RLAMDPVADAIVICGDVYEDAVLAACRDALPG--GADLIMSDMAPN 124
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
+SGI + D A +++L A+D+A L PGG L+IK+
Sbjct: 125 MSGIASVDQARAIDLAELALDMA------------------QRWLVPGGSLLIKVF 162
>gi|381166722|ref|ZP_09875936.1| Ribosomal RNA large subunit (23S) methyltransferase [Phaeospirillum
molischianum DSM 120]
gi|380684295|emb|CCG40748.1| Ribosomal RNA large subunit (23S) methyltransferase [Phaeospirillum
molischianum DSM 120]
Length = 253
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL-GPLDN 66
D + EA+RLGY +R+AFK++Q+ ++ L++PG V+DLG APG W QVA Q +
Sbjct: 52 DPYVYEAKRLGYRSRAAFKIIQLDDRFHLLRPGVRVVDLGAAPGGWTQVAVQRVKAGQPK 111
Query: 67 GGSVVGIDVKKVKVPSLHCD--ARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMC 122
GG+VVG+D+ L D A + D + + P AL V+LSDM
Sbjct: 112 GGTVVGMDI-------LEWDPIAGATVLQGDFLADDAPDRLKEALGGPA---DVVLSDMA 161
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G + D + L A+ A+ VL PGG V K+ +
Sbjct: 162 APTTGHPSTDHLRIIALVEVALHFAM------------------EVLTPGGAFVAKVFQ 202
>gi|120611284|ref|YP_970962.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax citrulli
AAC00-1]
gi|143459163|sp|A1TQF0.1|RLME_ACIAC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120589748|gb|ABM33188.1| 23S rRNA Um-2552 2'-O-methyltransferase [Acidovorax citrulli
AAC00-1]
Length = 218
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I + LI+PG V+DLG APGAW Q + + P
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDETLGLIRPGQVVVDLGSAPGAWSQYLRRRMAPAGAA 80
Query: 68 -----GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
G+++ +D+ ++ V L D R + DV+ V+A + V++
Sbjct: 81 AGQLNGTLIALDILPMEPIEGVTFLQGDFREE----DVLARLQEAVQA-----RPVDVVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SG+ + DA L AVD A LKP G LV+K
Sbjct: 132 SDMAPNLSGVESVDAVRIAHLIELAVDFA------------------QQHLKPDGALVVK 173
Query: 179 LLE 181
L
Sbjct: 174 LFH 176
>gi|148652346|ref|YP_001279439.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Psychrobacter sp.
PRwf-1]
gi|189040324|sp|A5WCU8.1|RLME_PSYWF RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|148571430|gb|ABQ93489.1| 23S rRNA Um-2552 2'-O-methyltransferase [Psychrobacter sp. PRwf-1]
Length = 210
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KLL+I ++ LIK G +V+DLG APG+W QVA + +G +
Sbjct: 24 DHYVQLAQKEGYRARAAYKLLEINEKTNLIKKGMTVVDLGSAPGSWSQVAGRLVG---DE 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V + D R + V +++ + + V+LSDM P
Sbjct: 81 GILIASDILPMDALENVTFIQGDFREEAVFDRLMSEVGD---------RQVDVVLSDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SG T D + L AVD AL VL GG LV+K+ + +
Sbjct: 132 NTSGHTAVDQPRMIYLCELAVDFAL------------------RVLPKGGSLVMKVFQGE 173
>gi|337279400|ref|YP_004618872.1| cell division protein ftsJ [Ramlibacter tataouinensis TTB310]
gi|334730477|gb|AEG92853.1| Cell division protein ftsJ [Ramlibacter tataouinensis TTB310]
Length = 220
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 40/185 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGP---- 63
D + + A + GY AR+A+KL +I + LI+PG V+DLGCAPGAW Q + L P
Sbjct: 21 DPYVKLAHKEGYRARAAYKLKEIDEALGLIRPGHLVVDLGCAPGAWSQYVRRRLSPQGAA 80
Query: 64 ---LDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116
LD G+V+ +D+ ++ V L D R V A +++A+ +K V
Sbjct: 81 AGQLD--GTVIALDLLPMEAIEGVTFLQGDFREPEVLA--------RLQAVLAGRKA-DV 129
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176
++SDM P++SG+ + DAA L AV+ A S LKP G LV
Sbjct: 130 VVSDMAPNLSGVASADAARISHLVELAVEFA------------------SAHLKPEGALV 171
Query: 177 IKLLE 181
K+
Sbjct: 172 AKVFH 176
>gi|347737999|ref|ZP_08869646.1| Ribosomal RNA large subunit methyltransferase E [Azospirillum
amazonense Y2]
gi|346919062|gb|EGY00760.1| Ribosomal RNA large subunit methyltransferase E [Azospirillum
amazonense Y2]
Length = 246
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 4/68 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EA++ GY +R+AFKLLQ+ ++Y L+KPG+ V+DLG APG W QVA + + G
Sbjct: 45 DPYVAEAKKRGYRSRAAFKLLQLDEKYHLLKPGTRVVDLGAAPGGWTQVAVEKV----RG 100
Query: 68 GSVVGIDV 75
VVG+D+
Sbjct: 101 AKVVGLDI 108
>gi|47124733|gb|AAH70677.1| LOC431876 protein, partial [Xenopus laevis]
Length = 346
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D FY A+ GY +RSAFKL+Q+ ++++ ++ +++DL APG WLQVA + +
Sbjct: 8 GKSRKDKFYHLAKETGYRSRSAFKLIQLNRKFQFLQRARALVDLCAAPGGWLQVAAKFM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ ++GID+ +K +P+ V T+ D+ Q + V+L+D
Sbjct: 67 PV--SSLIIGIDLVPIKPIPN------VLTLQEDITTEDCRQAVKKHLQTWKADVVLNDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V T DA V L + A+ LA L GG + K+
Sbjct: 119 APNVGANWTHDAFSQVHLSLMALRLA------------------CDCLSRGGWFITKIFR 160
Query: 182 SQDAQ 186
S D Q
Sbjct: 161 SSDYQ 165
>gi|213408265|ref|XP_002174903.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Schizosaccharomyces
japonicus yFS275]
gi|212002950|gb|EEB08610.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Schizosaccharomyces
japonicus yFS275]
Length = 217
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 17/151 (11%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDL--GCAPGAWLQVACQSLGP 63
A D F + +++ Y +R+A+KL+ + +++ + G +V+DL G APG+W QVA +++GP
Sbjct: 16 ASDCFSKLSKKNNYRSRAAYKLIDLNRKHHIFNEGDTVIDLVKGFAPGSWSQVALKAVGP 75
Query: 64 LDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFS------V 116
G V+G+DV+ V P V + DV N+ N V L K G + V
Sbjct: 76 Y---GMVIGVDVRFVNPPQ-----GVHAIIGDVKNNVTVNGVYQLLKKHYGNTQNNQCDV 127
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLA 147
++SDM + +GI +D +S+ L A++ +
Sbjct: 128 VISDMFHNATGIPFRDHTISISLCRAALEFS 158
>gi|17553474|ref|NP_499776.1| Protein F45G2.9 [Caenorhabditis elegans]
gi|9910849|sp|O62251.1|RRMJ2_CAEEL RecName: Full=Putative ribosomal RNA methyltransferase F45G2.9;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|3877251|emb|CAB07618.1| Protein F45G2.9 [Caenorhabditis elegans]
Length = 214
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 10/135 (7%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
+ D F +A+ Y ARSAFKL++I +++K +KP S+V+D+GCAPG+WLQV Q
Sbjct: 19 STDEFAVKAREHNYRARSAFKLIEINEKFKFLKPESTVIDIGCAPGSWLQVVVQKCP--- 75
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSP-KQKGFSVILSDMCPS 124
G G+D++ V +P D +S I P+ +++ + V+LSDM P+
Sbjct: 76 -NGYASGVDLQNV-LPIRGAD----ILSLSDITDPAVKLKIREKLAHRQVDVVLSDMAPN 129
Query: 125 VSGITTKDAALSVEL 139
+G D +EL
Sbjct: 130 PTGDNATDHLRLIEL 144
>gi|343171936|gb|AEL98672.1| FtsJ-like methyltransferase family protein, partial [Silene
latifolia]
Length = 775
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 35/190 (18%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
++G D FY A+ GY +R++FK++QI ++ L+ S+LDL APG W+QVA Q
Sbjct: 2 VTGKNRLDKFYHLAKEQGYRSRASFKIIQIDAKFGLLNSSRSILDLCAAPGGWMQVAVQR 61
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQ------KGF 114
P+ G VVGID+ V + + VQ ++ + RA K K F
Sbjct: 62 -APV--GALVVGIDL--VSISPIRGAVSVQE------DITQPKCRATVKKLLSDNGFKAF 110
Query: 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
V+L D P+V G ++A L + ++ LA + L P GH
Sbjct: 111 DVVLHDGSPNVGGAWAQEATSQNSLVIDSLKLA------------------TDFLAPRGH 152
Query: 175 LVIKLLESQD 184
V K+ SQD
Sbjct: 153 FVTKVFRSQD 162
>gi|432868018|ref|XP_004071370.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Oryzias
latipes]
Length = 250
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 89/181 (49%), Gaps = 31/181 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + + + RSAFKLL+I +++L++PG SV+D G APGAW QVA Q + +
Sbjct: 49 DPYVKASHSQNFRCRSAFKLLEIDDRFRLLQPGFSVVDCGAAPGAWSQVAVQRVNSAGSD 108
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSN--QVRALSPKQKGFSVILSD 120
G V+GID+ + +P L A + + + P+ +++AL P + VILSD
Sbjct: 109 QDLPRGMVIGIDL--LHIPPL---AGAHFLPSHDVTDPATHAELQALLPSGQA-HVILSD 162
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+ +G D V + + +DLA VL PGG L+ K
Sbjct: 163 MAPNATGFRDMDHERLVSMCLSLIDLA------------------EKVLLPGGSLLCKYW 204
Query: 181 E 181
+
Sbjct: 205 D 205
>gi|90022366|ref|YP_528193.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Saccharophagus degradans
2-40]
gi|123276498|sp|Q21H48.1|RLME_SACD2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|89951966|gb|ABD81981.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Saccharophagus degradans
2-40]
Length = 206
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++Q+ GY +R+++KL+++ + KLIK G +V+DLG APG W QVA Q +G +G
Sbjct: 17 DQYVKDSQKDGYRSRASYKLIELNDKDKLIKSGQTVVDLGAAPGGWSQVAAQIVG---DG 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV D+ + + SL A V V D + + +++SDM P++SG
Sbjct: 74 GRVVASDI--LPMDSL---AGVDFVQGDFTEEAVLEQLLELLGEAKADLVISDMAPNMSG 128
Query: 128 ITTKDAALSVELGMRAVDLA 147
I D S+ L A+D+A
Sbjct: 129 IADVDQPKSMYLVELALDMA 148
>gi|442610885|ref|ZP_21025591.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441746813|emb|CCQ11653.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 209
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 16/143 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EAQR GY +R+ FKL +IQ++ KLIK G +V+DLG APG+W Q + LG
Sbjct: 20 DPYVHEAQRRGYRSRAVFKLEEIQEKDKLIKSGMNVVDLGAAPGSWSQYLAEQLG---ER 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V+N ++ K V+ SDM P
Sbjct: 77 GEVIACDILPMDPLAGVAFLQGDFREEA----VLNALLKRIDG-----KNIDVVFSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDL 146
++SG + D A S+ L A+D+
Sbjct: 128 NMSGNMSIDQAGSMYLVELALDM 150
>gi|344239698|gb|EGV95801.1| Putative ribosomal RNA methyltransferase 2 [Cricetulus griseus]
Length = 245
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 31/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A+ Y RSAFKL+ I +++ +++PG VLD G APGAW QVA Q +
Sbjct: 41 DPFVKAAKVESYRCRSAFKLMAINEKHHILRPGLRVLDCGAAPGAWSQVAVQRVNATGTD 100
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALS--PKQKGFSVILSD 120
G V+G+D+ + + ADV + P + R L P++K VILSD
Sbjct: 101 CSSPVGYVLGVDLLHI----FPLEGATFLCPADVTD-PGTRQRILDLLPRRKA-DVILSD 154
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
M P+ +GI D + L + VD+A+ +L PGG L+ K
Sbjct: 155 MAPNATGIRDLDHDRLISLCLTLVDMAV------------------DILHPGGTLLCK 194
>gi|121605506|ref|YP_982835.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Polaromonas
naphthalenivorans CJ2]
gi|143460978|sp|A1VQI6.1|RLME_POLNA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|120594475|gb|ABM37914.1| 23S rRNA Um-2552 2'-O-methyltransferase [Polaromonas
naphthalenivorans CJ2]
Length = 245
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 36/185 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A++ GY AR+AFKL ++ + LIKPG V+DLG PGAW Q + L P
Sbjct: 40 DPYVKQARKEGYRARAAFKLKEMDETLGLIKPGDCVVDLGSTPGAWSQYVRRKLSPTGAA 99
Query: 68 -----GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV-- 116
G ++G+D+ ++ V + D R V A + +ALS ++ V
Sbjct: 100 VGALNGRIIGLDLLPMEPIEGVVFIQGDFREPEVLAKL-------EQALSTEKGPVKVDL 152
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176
++SDM P++SGI + DAA L AV+ A +KP G LV
Sbjct: 153 VISDMAPNLSGIESADAARIAHLVELAVEFA------------------QTRMKPDGALV 194
Query: 177 IKLLE 181
+KL
Sbjct: 195 VKLFH 199
>gi|388258636|ref|ZP_10135811.1| LacI family transcription regulator [Cellvibrio sp. BR]
gi|387937395|gb|EIK43951.1| LacI family transcription regulator [Cellvibrio sp. BR]
Length = 206
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY AR+A+KLL++ ++ KLI+P V+DLG APG+W Q+A + +G
Sbjct: 17 DPYVKKAQVDGYRARAAYKLLELNEKDKLIRPAMMVVDLGSAPGSWSQIAGRLVGV---K 73
Query: 68 GSVVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ D+ + + SL H D + +V+ NQ+ + V++SDM P++S
Sbjct: 74 GRVIASDI--LPMDSLEHVDFIQGDFTEEVV---FNQIMEKLGGNRA-DVVISDMAPNIS 127
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G+ D A S+ L A+D+A VLKP G V K+ +
Sbjct: 128 GVDAVDQASSMYLVELALDMA------------------RSVLKPKGDFVAKVFHGE 166
>gi|330836075|ref|YP_004410716.1| ribosomal RNA large subunit methyltransferase E [Sphaerochaeta
coccoides DSM 17374]
gi|329747978|gb|AEC01334.1| Ribosomal RNA large subunit methyltransferase E [Sphaerochaeta
coccoides DSM 17374]
Length = 206
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 25/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A++ GY ARS +KL +IQK +++I+PG+ VLD+G APG+W + + L
Sbjct: 10 DSYTLRARKEGYPARSVYKLEEIQKVFRIIRPGAKVLDVGAAPGSWTLYVHREI--LKGK 67
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
GS+V +D+ + + L V + D S +R+L + I+SD P +G
Sbjct: 68 GSIVAVDLNPLSLNPL--PPSVMEFTGDAF---SEDIRSLLVVNGPYDAIISDAAPMTTG 122
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D A S L + LA LKP G+LVIK+ +
Sbjct: 123 NRMVDVARSENLAESVLSLA------------------REHLKPHGNLVIKIFQ 158
>gi|409200326|ref|ZP_11228529.1| 23S rRNA methyltransferase J [Pseudoalteromonas flavipulchra JG1]
Length = 209
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EAQ+ GY +R+ FKL ++Q++ KLI+ G +V+DLG APG+W Q + +D G
Sbjct: 20 DPYVHEAQKRGYRSRAVFKLEEVQQKDKLIRKGMTVVDLGAAPGSWSQYLAEQ---VDIG 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V+N +++ K V+ SDM P
Sbjct: 77 GQVIACDILPMDSLAGVDFLQGDFREEA----VLNALLDRING-----KNVDVVFSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D + S+ L A+D+ VLKP G +K+ + +
Sbjct: 128 NMSGNMSTDQSGSMYLVELALDMC------------------HQVLKPNGAFAVKVFQGE 169
>gi|393244661|gb|EJD52173.1| FtsJ-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 879
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 12/149 (8%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ G+ ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRIDKYYKLAKEQGFRARSAFKLIQLNKKYGFLEHARCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILS 119
P+++ +VG+D+ +K +P RV T ++D+ NQ+RA K V+L
Sbjct: 68 -PVNS--LIVGVDLVPIKPIP------RVVTFASDITTTQCRNQLRAELKDWKA-DVVLH 117
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLAL 148
D P+V +DA EL + ++ LA+
Sbjct: 118 DGAPNVGTAWIQDAYSQSELVLMSLKLAV 146
>gi|426401844|ref|YP_007020816.1| ftsJ-like methyltransferase family protein [Candidatus
Endolissoclinum patella L2]
gi|425858512|gb|AFX99548.1| ftsJ-like methyltransferase family protein [Candidatus
Endolissoclinum patella L2]
Length = 239
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 19/143 (13%)
Query: 13 EAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVG 72
A+RLGY +R+AFKL++I ++K++ G V+DLGCAPG W Q+ Q +G N G +VG
Sbjct: 52 NAKRLGYRSRAAFKLMEIDDKFKILSNGQRVVDLGCAPGGWTQIVIQRIGASHN-GQIVG 110
Query: 73 IDV---KKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSVSGI 128
ID+ + L Q D+ LS K G +V+LSD+ PS +G
Sbjct: 111 IDMVPLDPIPFAELLLGDFSQASGMDL----------LSSKLSGPANVVLSDLAPSFTGH 160
Query: 129 TTKDAALSVELGMRAVDLALGPA 151
D + L +LALG A
Sbjct: 161 KRTDHIRIMLLA----ELALGFA 179
>gi|365897776|ref|ZP_09435760.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. STM 3843]
gi|365421521|emb|CCE08302.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. STM 3843]
Length = 221
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KLL+I +Y ++KPG +V+DLG APG W Q+A + +G
Sbjct: 23 DPYVAQAKRDGYRSRAAYKLLEIDDKYHVLKPGMTVVDLGAAPGGWSQIAAKRVGADAGR 82
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ ID+ ++ ++P + + + P + L + V++SDM + +
Sbjct: 83 GRVIAIDLLEMGEIPGV----TFTQLDFHASDAPDKLMAMLGGRA---DVVMSDMAANTT 135
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L A A VLKPGG V K +S
Sbjct: 136 GHRKTDQ-------LRIVGLVELAAHFAGE-----------VLKPGGAFVAKTFQS 173
>gi|194290076|ref|YP_002005983.1| ribosomal RNA large subunit methyltransferase j [Cupriavidus
taiwanensis LMG 19424]
gi|226703293|sp|B3R1S2.1|RLME_CUPTR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|193223911|emb|CAQ69920.1| Ribosomal RNA large subunit methyltransferase J [Cupriavidus
taiwanensis LMG 19424]
Length = 221
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 94/186 (50%), Gaps = 37/186 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLI+PG ++DLG APG+W Q A L
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKLADSPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115
G +D G+VV ID+ ++ V + D R ++V ++ ++ V S K
Sbjct: 77 RDGRID--GAVVAIDLLPMEPVADVTFIQGDFREESVFRELESV----VLDASGGNK-ID 129
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175
++LSDM P++SG+ + DAA L DLAL A LKP G L
Sbjct: 130 LVLSDMAPNLSGVASADAARIEYL----CDLALEFA--------------QAHLKPEGAL 171
Query: 176 VIKLLE 181
++K
Sbjct: 172 LVKCFH 177
>gi|372267507|ref|ZP_09503555.1| ribosomal RNA large subunit methyltransferase J [Alteromonas sp.
S89]
Length = 206
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++Q+ GY +R+++KL ++Q++ +LIKPG +V+DLG APG W QVA + +G +
Sbjct: 17 DHYVKQSQKEGYRSRASYKLQELQEKDRLIKPGMTVVDLGAAPGGWSQVAAELVG---HK 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D+ +P + A V V D + ++ +++SDM P++SG
Sbjct: 74 GRVLASDI----LP-MDALAGVDFVQGDFTEEAVFEELLEKLGEERADLVISDMAPNMSG 128
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D S+ L AVD+A LK GG V K+ + +
Sbjct: 129 VRAVDQPASMYLVELAVDMA------------------RQTLKSGGAFVAKVFQGE 166
>gi|350553432|ref|ZP_08922607.1| Ribosomal RNA large subunit methyltransferase E [Thiorhodospira
sibirica ATCC 700588]
gi|349790609|gb|EGZ44515.1| Ribosomal RNA large subunit methyltransferase E [Thiorhodospira
sibirica ATCC 700588]
Length = 208
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY +R+ FKL++I ++ +L++PG++VLDLG APG + Q A +G
Sbjct: 17 DVHVKRAQKEGYRSRAVFKLIEIDERDRLLRPGATVLDLGAAPGGFSQYAATKVG---TQ 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV D+ ++ P D V + D + Q + + ++LSDM P++SG
Sbjct: 74 GRVVATDILTME-P---LDG-VIFIQGDFLEDAVLQAIQAAMGEAAADLVLSDMAPNISG 128
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D ++ L A+D AL VLKP G ++KL + +
Sbjct: 129 VDAVDQPRAMYLAELALDTAL------------------HVLKPDGDFLVKLFQGE 166
>gi|226941815|ref|YP_002796889.1| FtsJ [Laribacter hongkongensis HLHK9]
gi|226716742|gb|ACO75880.1| FtsJ [Laribacter hongkongensis HLHK9]
Length = 205
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 34/181 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY +R+A+KLL+I + KL++PG +V DLG APG+W QVA G + +
Sbjct: 17 DHWVHMAQKEGYRSRAAYKLLEIHDKDKLLRPGMTVADLGSAPGSWSQVAA---GIVGDS 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ ++ V + D R V L + + +++SDM P
Sbjct: 74 GRVFALDLLEMAAIPGVDFIQGDFREDAVLDQFETLLAG---------RPLDLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ + D A + L A+D A LKPGG ++K+ +
Sbjct: 125 NLSGMASIDQARAAYLCELALDFA------------------RSHLKPGGAFLVKVFQGS 166
Query: 184 D 184
+
Sbjct: 167 E 167
>gi|328856745|gb|EGG05865.1| hypothetical protein MELLADRAFT_48684 [Melampsora larici-populina
98AG31]
Length = 884
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 5 GAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL 64
G D +YR A+ GY ARSAFKL+Q+ K+Y+ ++ +DL APG WLQVA + + P
Sbjct: 11 GRLDKYYRLAKEQGYRARSAFKLIQLNKRYQFLESARCCIDLCAAPGGWLQVAAKWM-PA 69
Query: 65 DNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
++ ++G+D+ +K +P +V T + D+ + K V+L D P
Sbjct: 70 NS--LILGVDLVPIKPIP------KVVTATEDIRTDSCRRWLRSELKDWKADVVLHDGAP 121
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+V +DA EL + + LA + +L PGG V K+ S+
Sbjct: 122 NVGTAWVQDAFSQAELVLHSFKLA------------------TEMLAPGGTFVTKVFRSK 163
Query: 184 D 184
D
Sbjct: 164 D 164
>gi|148225294|ref|NP_001089803.1| FtsJ RNA methyltransferase homolog 2 [Xenopus laevis]
gi|76779644|gb|AAI06596.1| MGC131369 protein [Xenopus laevis]
Length = 246
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 79/146 (54%), Gaps = 11/146 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD-- 65
D + +EAQ Y RSAFKLL+I ++ ++ PG V+D G APGAW QVA + + L
Sbjct: 45 DPYIKEAQAHNYRCRSAFKLLEIDSKHHILHPGHHVIDCGAAPGAWSQVAVEKVNSLGRD 104
Query: 66 ---NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDM 121
G VVG+D+ + P D V ++D+ + + ++ ++ P K VILSDM
Sbjct: 105 SAARAGFVVGVDLLNI-TP---LDGAVFLSNSDITDSDTQRKIISVLPSGKA-DVILSDM 159
Query: 122 CPSVSGITTKDAALSVELGMRAVDLA 147
P+ +GI D V + + ++L+
Sbjct: 160 APNATGIRDLDHQRLVNMCLSLLELS 185
>gi|78357369|ref|YP_388818.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio alaskensis
G20]
gi|123552112|sp|Q30YX3.1|RLME_DESDG RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|78219774|gb|ABB39123.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio alaskensis
G20]
Length = 207
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A+R Y ARS +KL +I K++ ++K G VLDLG APG+W A + +GP
Sbjct: 6 DHYFLKAKRENYPARSVYKLKEIDKRFGILKQGMRVLDLGAAPGSWSLGAAEKIGP---S 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D++ + V + DV + +ALS + F V++SDM P +G
Sbjct: 63 GRVLAADIQTTETV---FPPNVTFMQEDVFERSAEFEQALS-ETGPFDVVISDMAPKTTG 118
Query: 128 ITTKDAALSVELGMRAVDLA 147
D A S L A+ +A
Sbjct: 119 HKFTDQARSSNLCFEALAVA 138
>gi|393218409|gb|EJD03897.1| FtsJ-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 870
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYSFLESAKCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P+++ +VG+D+ ++ +P RV T +AD+ + K V+L D
Sbjct: 68 -PVNS--IIVGVDLVPIRPIP------RVSTFAADITTPQCRNLIRGELKDWKADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 119 GAPNVGTAWVQDAYSQSELVLMSLRLAV 146
>gi|348590526|ref|YP_004874988.1| cell division protein FtsJ [Taylorella asinigenitalis MCE3]
gi|347974430|gb|AEP36965.1| Cell division protein FtsJ [Taylorella asinigenitalis MCE3]
gi|399116666|emb|CCG19474.1| RNA large subunit methyltransferase E [Taylorella asinigenitalis
14/45]
Length = 211
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 32/176 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL---GPL 64
D + + AQ+ GY AR+AFKL++I KL++ G ++DLG +PG+W QVA + L G +
Sbjct: 17 DPYVKLAQQKGYRARAAFKLIEILDTEKLMRRGDIIVDLGSSPGSWSQVARERLLHKGEI 76
Query: 65 DNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPK--QKGFSVILSDMC 122
D G V+ +D+ +P H + V+ + D + + L K + +++SDM
Sbjct: 77 D--GRVIALDL----LPMEHIEG-VEFIQGDFRD--DEVLEQLEEKVGHQQVDLVISDMA 127
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
P++SGI++ D+A + AVD A + LKP G L++K
Sbjct: 128 PNLSGISSADSARIEHVVELAVDFA------------------TNHLKPEGALIVK 165
>gi|347837385|emb|CCD51957.1| similar to AdoMet-dependent rRNA methyltransferase spb1
[Botryotinia fuckeliana]
Length = 824
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +++
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAETM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ + +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 67 PVSS--LIVGVDLSPIKPIP------RVITFQSDITTEKCRATIRTHFKSWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +D+ EL ++++ LA + L PGG V K+
Sbjct: 119 APNVGTAWVQDSFNQAELALQSLKLA------------------TEFLAPGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|154309412|ref|XP_001554040.1| hypothetical protein BC1G_07600 [Botryotinia fuckeliana B05.10]
Length = 807
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +++
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAETM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ + +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 67 PVSS--LIVGVDLSPIKPIP------RVITFQSDITTEKCRATIRTHFKSWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +D+ EL ++++ LA + L PGG V K+
Sbjct: 119 APNVGTAWVQDSFNQAELALQSLKLA------------------TEFLAPGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|226946314|ref|YP_002801387.1| ribosomal RNA large subunit methyltransferase J/FtsJ [Azotobacter
vinelandii DJ]
gi|259494558|sp|C1DFL6.1|RLME_AZOVD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|226721241|gb|ACO80412.1| ribosomal RNA large subunit methyltransferase J/FtsJ [Azotobacter
vinelandii DJ]
Length = 207
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 92/177 (51%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQKDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRLIG---DR 73
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G ++ D+ + +P V + D + + + ++ +++SDM P++S
Sbjct: 74 GRLIASDILPMDSIPD------VTFIQGDFTDDAVFALLLEAIGEQPVDLVISDMAPNMS 127
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G+ D ++ L A+DLA VL+PGG +IK+ + +
Sbjct: 128 GVKAADQPRAMYLCELALDLA------------------GRVLRPGGDFLIKIFQGE 166
>gi|329120415|ref|ZP_08249081.1| ribosomal RNA large subunit methyltransferase J [Neisseria
bacilliformis ATCC BAA-1200]
gi|327462099|gb|EGF08427.1| ribosomal RNA large subunit methyltransferase J [Neisseria
bacilliformis ATCC BAA-1200]
Length = 228
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ GY AR+A+KLL+I ++ KLIKPG+ + DLG APG+W Q A + G
Sbjct: 40 DHYVHQAQKDGYRARAAYKLLEINEKDKLIKPGTVLADLGSAPGSWSQAAAKLAGA---S 96
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ ++ V + D R V A L RAL +++ DM P
Sbjct: 97 GKVFALDILPMEPVDGVSFVQGDFREADVLARFEELLGG--RAL-------DLVICDMAP 147
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG + D A S+ L A+D A LKPGG ++K +
Sbjct: 148 NMSGHSVTDQAKSLCLCQLALDFA------------------RCRLKPGGSFLVKAFQ 187
>gi|432110134|gb|ELK33911.1| Putative ribosomal RNA methyltransferase 1 [Myotis davidii]
Length = 321
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 25/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ ++++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLNEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGSPQGS 69
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + + +++ D P V+
Sbjct: 70 GHVVAVDLQAMAPLPG------VLQIQGDITQLSTAKEIIRHFEGCPADLVVCDGAPDVT 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 124 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 163
>gi|403412291|emb|CCL98991.1| predicted protein [Fibroporia radiculosa]
Length = 888
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/148 (36%), Positives = 82/148 (55%), Gaps = 12/148 (8%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYSFLESARCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILS 119
P+++ +VG+D+ +K P H V T ++D I P N +RA K V+L
Sbjct: 68 -PVNS--VIVGVDLVSIK-PIPH----VITFASD-ITTPQCRNLIRAELKDWKA-DVVLH 117
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLA 147
D P+V +DA EL + ++ LA
Sbjct: 118 DGAPNVGTAWVQDAYGQSELVLMSMKLA 145
>gi|262274890|ref|ZP_06052701.1| 23S rRNA methylase [Grimontia hollisae CIP 101886]
gi|262221453|gb|EEY72767.1| 23S rRNA methylase [Grimontia hollisae CIP 101886]
Length = 209
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL +IQ + KL+KPG +V+DLG APG W Q A + +G +
Sbjct: 20 DKYVQEAQKKGFRSRAIFKLEEIQGKDKLLKPGMTVVDLGAAPGGWSQYAAEQVG---DS 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V +++ + P V++SDM P
Sbjct: 77 GQVIACDILPMDSLPGVAFLQGDFREEAVLNALLD-------RIQPDM--VDVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D A ++ L A+D+ VL P G ++K+ + +
Sbjct: 128 NMSGNLVSDQARAMYLVELALDMC------------------REVLAPNGSFIVKVFQGE 169
>gi|326484862|gb|EGE08872.1| ribosomal RNA methyltransferase MRM2 [Trichophyton equinum CBS
127.97]
Length = 291
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 91/228 (39%), Gaps = 75/228 (32%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EA G +R+AFKLLQI +Y+L K G +V+DLG APG+W QVA P
Sbjct: 37 DAYTKEASMQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYAPGSWSQVAFNLTKPR--- 93
Query: 68 GSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN-----LPSNQVRALSPKQK--- 112
G VVG+D+ + P RVQ D + P +Q+ L+ + K
Sbjct: 94 GRVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNRGRPRSQLPTLNEQGKSSP 153
Query: 113 ----------GF-----------------------------SVILSDMCPSVSGITTKDA 133
G+ VILSDM + SG ++D
Sbjct: 154 STEPGAETDGGYIDLERSSSAHINKDDDAAPLPTKAKVGSVDVILSDMLMNTSGTKSRDH 213
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
S+EL A+D A S VLK GGH V K +
Sbjct: 214 LGSMELCKAALDFA------------------SNVLKEGGHFVCKYYQ 243
>gi|405963785|gb|EKC29332.1| hypothetical protein CGI_10009815 [Crassostrea gigas]
Length = 244
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 72/149 (48%), Gaps = 33/149 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A+ + RSAFKLL+I ++KL PG V+D+G APG+W QVAC+ +
Sbjct: 36 DPYVKRAREENWRCRSAFKLLEIDDKHKLFSPGQLVIDIGAAPGSWTQVACRRTNAAGSD 95
Query: 68 -----GSVVGIDVKK-VKVP-----------SLHCDARVQTVSADVINLPSNQVRALSPK 110
G V+ ID+ V+VP SL C ++ +SA
Sbjct: 96 AKLPKGKVISIDLLPIVRVPGAQIIDCTDFTSLECQGKIIELSAG--------------- 140
Query: 111 QKGFSVILSDMCPSVSGITTKDAALSVEL 139
K VILSDM P+ SGI T D + V L
Sbjct: 141 -KKADVILSDMAPNASGIKTFDGRILVSL 168
>gi|149375763|ref|ZP_01893531.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter algicola
DG893]
gi|149359888|gb|EDM48344.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinobacter algicola
DG893]
Length = 206
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ GY +R+++KL+++ + +L +PG +V+DLG APG W QVA + +G DN
Sbjct: 17 DVWVKKSREDGYRSRASYKLIELDNKDRLFRPGQTVVDLGAAPGGWSQVAIERVG--DN- 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV D+ + + A V V D + V++SDM P++SG
Sbjct: 74 GVVVASDILE-----MSPIAGVAFVQGDFTEQSVLDELLDLLGDRRADVVISDMAPNMSG 128
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ AA+ + M V+LAL A VLKPGG V K+ + +
Sbjct: 129 M----AAVDIPNAMGLVELALDMA--------------QQVLKPGGVFVAKVFQGE 166
>gi|294925458|ref|XP_002778927.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
50983]
gi|239887773|gb|EER10722.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
50983]
Length = 418
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 34/181 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY+ A+ GY ARSAFKL+Q++K+Y +K S +DL APG W QVA + + P ++
Sbjct: 13 DRFYQLAKEQGYRARSAFKLIQLEKKYGFLKNARSCVDLCGAPGGWSQVAVKHM-PANS- 70
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
V+ +D+ +K V ++ CD Q ++ + +P V+L+D P
Sbjct: 71 -KVICVDLMPIKPIKGVVTMQCDITTQKCRQFLLKELNG-----TP----CDVVLNDGAP 120
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+V KDA EL + AV LA + +L+ GG V K+ S
Sbjct: 121 NVGASWAKDAYNQAELCLYAVHLA------------------ADMLRKGGTFVTKVFRSS 162
Query: 184 D 184
D
Sbjct: 163 D 163
>gi|157128998|ref|XP_001655238.1| cell division protein ftsj [Aedes aegypti]
gi|108872397|gb|EAT36622.1| AAEL011303-PA [Aedes aegypti]
Length = 239
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 11/147 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D + +A+ L Y RSAFKLL+I ++Y +IKPG +V+D G +PG+W Q+A Q
Sbjct: 38 DPYVEKAKMLNYRCRSAFKLLEIDQKYNIIKPGHTVIDCGASPGSWSQIAVQQSNASGSQ 97
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDM 121
P G V+G+D+ ++ P H T D + S +++RAL +++ +LSDM
Sbjct: 98 PGKPRGMVIGVDLLQI-YPIEHATMLGNT---DFMKQESQDKIRALLGERR-VDCVLSDM 152
Query: 122 CPSVSGITTKDAALSVELGMRAVDLAL 148
P+ +G+ + D + L + A+
Sbjct: 153 APNATGVRSLDQENIITLCYSVLRFAI 179
>gi|374331032|ref|YP_005081216.1| Ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
FO-BEG1]
gi|359343820|gb|AEV37194.1| Ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
FO-BEG1]
Length = 233
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A+ GY +R+A+KL++I ++++++KPG V+DLGCAPG W Q+ +G D+
Sbjct: 39 DPYVRRAKVDGYRSRAAYKLIEINEKHEILKPGMRVVDLGCAPGGWSQLTAPIVGSTDDD 98
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPS 124
VVGID +V+ +P V + D + + P ++AL + +++SDM
Sbjct: 99 PLVVGIDYLEVEPIPG------VVILQKDFLDDDAPDELMKALGGHRP--DLVMSDMAAP 150
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
+G D + L A+D A
Sbjct: 151 TTGHRQTDHLRTTYLFEIAIDFA 173
>gi|56478166|ref|YP_159755.1| cell division protein FtsJ [Aromatoleum aromaticum EbN1]
gi|81356990|sp|Q5P1G0.1|RLME_AROAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56314209|emb|CAI08854.1| cell division protein FtsJ [Aromatoleum aromaticum EbN1]
Length = 207
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 30/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A+ GY +R+AFKL+++ + +L++ G V+DLG APG+W QVA + +G
Sbjct: 17 DPYVQRAKSEGYRSRAAFKLIELDDRDRLMRSGMVVVDLGAAPGSWSQVALRRVG---RE 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGF--SVILSDMCPSV 125
G V +D+ + V+ + D P + L + G V+LSDM P++
Sbjct: 74 GRVFALDLLPLDPLGG-----VEFIQGDFQEEPV--LAELESRLGGLPVDVVLSDMAPNM 126
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
SGI T D A S+ LG A++ A LKPGG V+K+ + Q
Sbjct: 127 SGIDTTDQARSIYLGELALEFA------------------GHHLKPGGGFVVKVFQGQ 166
>gi|254473353|ref|ZP_05086750.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
JE062]
gi|211957469|gb|EEA92672.1| ribosomal RNA large subunit methyltransferase J [Pseudovibrio sp.
JE062]
Length = 233
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A+ GY +R+A+KL++I ++++++KPG V+DLGCAPG W Q+ +G D+
Sbjct: 39 DPYVRRAKVDGYRSRAAYKLIEINEKHEILKPGMRVVDLGCAPGGWSQLTAPIVGSTDDD 98
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPS 124
VVGID +V+ +P V + D + + P ++AL + +++SDM
Sbjct: 99 PLVVGIDYLEVEPIPG------VVILQKDFLDDDAPDELMKALGGHRP--DLVMSDMAAP 150
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
+G D + L A+D A
Sbjct: 151 TTGHRQTDHLRTTYLFEIAIDFA 173
>gi|260809478|ref|XP_002599532.1| hypothetical protein BRAFLDRAFT_279878 [Branchiostoma floridae]
gi|229284812|gb|EEN55544.1| hypothetical protein BRAFLDRAFT_279878 [Branchiostoma floridae]
Length = 321
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G D FY+ A+ GY ARSAFKL+Q+ ++Y ++ ++DL APG WLQVA + +
Sbjct: 7 TGQHRKDKFYKLAKETGYRARSAFKLIQLNRKYGFLQRSKVLVDLCAAPGGWLQVAAKYM 66
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P+ +VGID+ +K +P+ V T+ AD+ Q +L D
Sbjct: 67 -PV--SSLLVGIDLVPIKPIPN------VSTIQADITTDKCRQALRKELATWQADCVLHD 117
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
P+V KDA+ +L + A+ LA + VL GG V K+
Sbjct: 118 GAPNVGSNWLKDASEQAQLVLAALRLA------------------TEVLSKGGCFVTKVF 159
Query: 181 ESQD 184
S+D
Sbjct: 160 RSKD 163
>gi|326474733|gb|EGD98742.1| cell division protein ftsj [Trichophyton tonsurans CBS 112818]
Length = 291
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 92/228 (40%), Gaps = 75/228 (32%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EA G +R+AFKLLQI +Y+L K G +V+DLG APG+W QVA P
Sbjct: 37 DAYTKEASMQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYAPGSWSQVAFNLTKPR--- 93
Query: 68 GSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS-----NQVRALSPKQK--- 112
G VVG+D+ + P RVQ D + P+ +Q+ L+ + K
Sbjct: 94 GRVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNRGRPWSQLPTLNEQGKSSP 153
Query: 113 ----------GF-----------------------------SVILSDMCPSVSGITTKDA 133
G+ VILSDM + SG ++D
Sbjct: 154 STEPGAETDGGYIDLERSSSAHINKDDDAAPLPTKAKVGSVDVILSDMLMNTSGTKSRDH 213
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
S+EL A+D A S VLK GGH V K +
Sbjct: 214 LGSMELCKAALDFA------------------SNVLKEGGHFVCKYYQ 243
>gi|402466053|gb|EJW01631.1| 23S rRNA (uridine(2552)-2'-O-)-methyltransferase [Edhazardia aedis
USNM 41457]
Length = 264
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A++ GY ARSA+KL+QI ++Y L +SV+DL APG+W QV Q ++
Sbjct: 10 DIYYRMAKKEGYRARSAYKLIQIDQEYDLFNGVNSVVDLCSAPGSWSQVCAQK---INKN 66
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ ID++K++ V L D + + + +++ +IL D P
Sbjct: 67 GKVISIDMQKIQPLDGVHFLREDITTEECKEKIFEIVKDKI----------DLILFDGAP 116
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAAL-ASPVNNSDSSTDSGVL 169
V+GI D L A+ + A + A+ V S D+G +
Sbjct: 117 DVTGIIDIDEYHQTVLLKEALAITAKIAKVGATFVGKCFRSEDTGYI 163
>gi|399907841|ref|ZP_10776393.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomonas sp. KM-1]
Length = 246
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 30/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F +++ + GY +R+++KLL + ++ +L KPG SV+DLG APG W QVA +GP
Sbjct: 57 DRFVQQSWQDGYRSRASYKLLALDEKDRLFKPGMSVIDLGAAPGGWSQVAADRVGP---E 113
Query: 68 GSVVGIDVKKVKVPSLHCDAR--VQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G V+ D+ L DA V+ + D + + + +++SDM P++
Sbjct: 114 GMVIASDI-------LEMDALAGVEFIQGDFTEEAVLEAILATLDGRPVDLVMSDMAPNM 166
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
SG++ D ++ L A+DLA L+PGG + K+ + +
Sbjct: 167 SGMSAIDQPQAMYLVELALDLA------------------RQTLRPGGRFLAKVFQGE 206
>gi|325958289|ref|YP_004289755.1| ribosomal RNA large subunit methyltransferase E [Methanobacterium
sp. AL-21]
gi|325329721|gb|ADZ08783.1| Ribosomal RNA large subunit methyltransferase E [Methanobacterium
sp. AL-21]
Length = 204
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
+ +Y+ A++ Y +R+++KL Q+ K++K+IK V+DLG APG W Q+A +++G
Sbjct: 12 EHYYKMAKKQNYRSRASYKLQQLNKRFKVIKAADKVVDLGAAPGGWSQIALEAVGE---E 68
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G+VVG+D++ ++ + TV D + +V+ L V++SD P ++
Sbjct: 69 GTVVGVDLEWIRPLD---EENFHTVRGDFTKDETLKEVKDLINGTA--QVVISDAAPKLT 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
GI D +R+ DLA +N+ + D VL GG+ V+K+ +
Sbjct: 124 GIKDIDT-------IRSTDLA----------DNALTVCDH-VLMQGGNFVLKVFQ 160
>gi|365858113|ref|ZP_09398069.1| ribosomal RNA large subunit methyltransferase J [Acetobacteraceae
bacterium AT-5844]
gi|363714683|gb|EHL98171.1| ribosomal RNA large subunit methyltransferase J [Acetobacteraceae
bacterium AT-5844]
Length = 228
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 41/181 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A+ G+ +R+AFK+L++ ++YKL +P V+DLG APG W QVA Q +G +
Sbjct: 35 DPYVRAAKAAGWRSRAAFKILELDEKYKLFRPNQRVVDLGAAPGGWTQVAVQRVG---DS 91
Query: 68 GSVVGIDVKKV-KVPSLHC------DARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
G VVG+D+ + ++P D V+ + ++ P++ ++LSD
Sbjct: 92 GKVVGLDLLPMDEIPGATLLQGDFQDDAVEQAVLEALDGPAD-------------LVLSD 138
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+ +G D + L A+D A VL PGG V K
Sbjct: 139 MAPNTTGHNATDHLRILGLIELALDFA------------------GKVLTPGGAFVAKAF 180
Query: 181 E 181
+
Sbjct: 181 Q 181
>gi|157828081|ref|YP_001494323.1| cell division protein ftsJ [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165932781|ref|YP_001649570.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Iowa]
gi|378720881|ref|YP_005285768.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Colombia]
gi|378722234|ref|YP_005287120.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Arizona]
gi|378723593|ref|YP_005288477.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Hauke]
gi|379016857|ref|YP_005293092.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Brazil]
gi|379017381|ref|YP_005293615.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Hino]
gi|189040328|sp|B0BWD8.1|RLME_RICRO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|189040329|sp|A8GQZ0.1|RLME_RICRS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|157800562|gb|ABV75815.1| cell division protein ftsJ [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165907868|gb|ABY72164.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Iowa]
gi|376325381|gb|AFB22621.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Brazil]
gi|376325905|gb|AFB23144.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Colombia]
gi|376327258|gb|AFB24496.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Arizona]
gi|376329946|gb|AFB27182.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Hino]
gi|376332608|gb|AFB29841.1| 23S rRNA Um2552 2'-O-methyltransferase [Rickettsia rickettsii str.
Hauke]
Length = 227
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 30/167 (17%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN--GGSVVGIDV 75
G+ +R+A+KLL+I +++KL P V+DLG APG W QVA + + DN ++ IDV
Sbjct: 45 GFRSRAAYKLLEIHEKFKLFTPNMKVVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDV 104
Query: 76 KKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCPSVSGITTKDA 133
+++ H A V+ V D + + ++AL + +++SDM + G D
Sbjct: 105 LEIE----HV-AGVEFVQKDFFEADTEELIIQALDGRA---DIVMSDMASNTIGHKATDH 156
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++ L +A + AL VLKP GH + K+
Sbjct: 157 IRTLLLCEQAFEFAL------------------KVLKPSGHFIAKIF 185
>gi|392377558|ref|YP_004984717.1| ribosomal RNA large subunit (23S) methyltransferase [Azospirillum
brasilense Sp245]
gi|356879039|emb|CCC99935.1| ribosomal RNA large subunit (23S) methyltransferase [Azospirillum
brasilense Sp245]
Length = 236
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 77/176 (43%), Gaps = 28/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EA + G+ +R+AFKLLQ+ +++ L+ PG V+DLG APG W QVA + G
Sbjct: 40 DPYVHEATKRGFRSRAAFKLLQLDEKFHLLGPGKRVVDLGAAPGGWTQVAVDKVQTAREG 99
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSV 125
VVG+D+ + VP T+ AD L L G V+LSDM
Sbjct: 100 WKVVGLDILPMDPVPG------ATTMQADF--LEEGAAERLKEALGGPADVVLSDMAAPT 151
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G + D + L A D A VL PGG V KL +
Sbjct: 152 IGHQSTDHLRIMALAEAAYDFA------------------EEVLAPGGAFVAKLFQ 189
>gi|430805045|ref|ZP_19432160.1| 23S rRNA methyltransferase J [Cupriavidus sp. HMR-1]
gi|429502746|gb|ELA01052.1| 23S rRNA methyltransferase J [Cupriavidus sp. HMR-1]
Length = 221
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 37/186 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I Q KLI+PG ++DLG APG+W Q A L
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDDQDKLIQPGQVIVDLGAAPGSWSQYARNKLAASPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115
G +D G+VV ID+ ++ V + D R + V + QV +
Sbjct: 77 KDGRID--GAVVAIDILPMEPVADVTFIQGDFREEEVFRQL-----EQVVLDASGGSRID 129
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175
+++SDM P++SG+ + DAA L A+D A LKP G L
Sbjct: 130 LVISDMAPNLSGVASADAARIEYLCDLALDFA------------------QAHLKPEGSL 171
Query: 176 VIKLLE 181
++K
Sbjct: 172 LVKCFH 177
>gi|149755358|ref|XP_001492181.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Equus
caballus]
Length = 264
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 11/146 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGP--LD 65
D F + A+ Y RSAFKLL++ +++++++PG VLD G APGAW QVA Q + D
Sbjct: 59 DPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQRVNAAGTD 118
Query: 66 NG---GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
G G V+G+D+ + + ADV + + Q +R L P + VILSDM
Sbjct: 119 PGAPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTFQRIRELLPGGRA-DVILSDM 173
Query: 122 CPSVSGITTKDAALSVELGMRAVDLA 147
P+ +GI D + L + +DLA
Sbjct: 174 APNATGIRGLDHDRLISLCLSLLDLA 199
>gi|152995050|ref|YP_001339885.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinomonas sp. MWYL1]
gi|150835974|gb|ABR69950.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Marinomonas sp. MWYL1]
Length = 196
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 92/177 (51%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++Q+ GY +R+++KL++I + KL KP V+DLG APG W QVA + +G +
Sbjct: 7 DPYVKKSQQDGYRSRASYKLIEINDKDKLFKPAMRVVDLGAAPGGWSQVAAKLVG---DH 63
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G++V D+ ++ +P V V D + K +++SDM P++S
Sbjct: 64 GTIVASDILEMAPLPG------VSFVQGDFTEQEVYEAILAEIGDKKADLVISDMAPNMS 117
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G ++ D ++ L V+LAL AA VL+PGG+ ++K+ + +
Sbjct: 118 GNSSSDQPQAMYL----VELALDMAA--------------QVLRPGGNFLVKVFQGE 156
>gi|409051734|gb|EKM61210.1| hypothetical protein PHACADRAFT_156427 [Phanerochaete carnosa
HHB-10118-sp]
Length = 864
Score = 73.9 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 10/148 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYSFLENARCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P++ +VG+D+ +K +P RV T + D+ + K V+L D
Sbjct: 68 -PVNT--VIVGVDLVPIKPIP------RVVTFACDITTPQCRNLIRGELKDWKADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 119 GAPNVGTAWVQDAYSQSELVLMSMKLAV 146
>gi|359443464|ref|ZP_09233303.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20429]
gi|392534125|ref|ZP_10281262.1| 23S rRNA methyltransferase J [Pseudoalteromonas arctica A 37-1-2]
gi|358034687|dbj|GAA69552.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20429]
Length = 209
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL ++Q + K+++PG +V+DLG APG+W Q + +G +
Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEVQNRDKILRPGMTVVDLGAAPGSWSQYLAEKVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V+N ++ K V+LSDM P
Sbjct: 77 GQVIACDILPMDSLAGVDFLQGDFREEA----VLNALLKRIDG-----KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D A S+ L A+D+ S VLK G ++K+ + +
Sbjct: 128 NMSGNNSVDQAGSMYLVELALDMC------------------SQVLKKNGAFIVKVFQGE 169
>gi|400406551|ref|YP_006589299.1| 23S rRNA methylase [secondary endosymbiont of Heteropsylla cubana]
gi|400364804|gb|AFP85871.1| 23S rRNA methylase [secondary endosymbiont of Heteropsylla cubana]
Length = 209
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ G +R+ FKL +IQ++YKL++PG +V++LG APG W Q + +G
Sbjct: 20 DKYVQQAQIKGIRSRAWFKLAEIQQKYKLLRPGMTVIELGTAPGGWAQYITKQIG---KT 76
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++ D + +++ V+ + D + Q +QK ++LSDM P++SG
Sbjct: 77 GRIIACD-----ILAMNPIVGVEFLQGDFCEPFTLQSLLQRLEQKKAQIVLSDMAPNMSG 131
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
I D S+ L +D+ +L PGG +++K+ + +
Sbjct: 132 IPAIDIPKSIHLVRLVLDMC------------------KDILSPGGGMLVKVFQGE 169
>gi|303390043|ref|XP_003073253.1| 23S rRNA methyl-transferase [Encephalitozoon intestinalis ATCC
50506]
gi|303302398|gb|ADM11893.1| 23S rRNA methyl-transferase [Encephalitozoon intestinalis ATCC
50506]
Length = 550
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G D +Y A+ GY ARSAFKLLQI ++Y ++ ++DL APG+W QVA Q +
Sbjct: 7 TGRTRLDKYYNLAKEKGYRARSAFKLLQINRKYAFLEKAHVLIDLCAAPGSWCQVAAQEM 66
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSD 120
PL +V +D++ +K V T++AD+ + ++R + K V+L D
Sbjct: 67 -PLRR--KIVAVDLEPIKFM-----GDVDTITADITSDECRLRLREILGTHKA-DVVLHD 117
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
P+V G + ++ A + L L L A L + LK GG V K+
Sbjct: 118 GAPNV-GTSWENDAFNQNL------LVLHSARLTAE-----------FLKKGGVFVTKVF 159
Query: 181 ESQD 184
SQD
Sbjct: 160 RSQD 163
>gi|170739001|ref|YP_001767656.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
4-46]
gi|168193275|gb|ACA15222.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium sp.
4-46]
Length = 258
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 30/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY +R+A+KLL+I +++ L++PG V+DLG APG W QVA +G
Sbjct: 37 DPYVARAKREGYRSRAAYKLLEIDERFHLLRPGQRVVDLGAAPGGWSQVAAAKVGSHPGA 96
Query: 68 ----GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
G VVGID+ +++ +P V ++ D ++ PS R ++ +++SDM
Sbjct: 97 PPPRGRVVGIDLLEIEPMPG------VDFLTLDFLD-PSAPARLIALLGGPADLVMSDMA 149
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ +G D +R + LA AA A VL PGG + K+L+
Sbjct: 150 ANATGHKKTDH-------LRIMGLAETAAAFARE-----------VLAPGGAYLAKVLQ 190
>gi|118404228|ref|NP_001072428.1| FtsJ homolog 3 [Xenopus (Silurana) tropicalis]
gi|113197746|gb|AAI21673.1| FtsJ homolog 3 [Xenopus (Silurana) tropicalis]
Length = 298
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D FY A+ GY +RSAFKL+Q+ ++++ + +++DL APG WLQVA + +
Sbjct: 8 GKSRKDKFYHLAKETGYRSRSAFKLIQLNRKFQFLPKARALVDLCAAPGGWLQVAAKFM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ ++G+D+ +K +P +V T+ D+ Q + V+L+D
Sbjct: 67 PI--SSLIIGVDLVPIKPIP------KVLTLQEDITTEACRQTVRKHLQTWKADVVLNDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V T DA V L + A+ LA L GG + K+
Sbjct: 119 APNVGANWTHDAFSQVHLSLMALRLA------------------CDCLSRGGWFITKIFR 160
Query: 182 SQDAQ 186
S D Q
Sbjct: 161 SSDYQ 165
>gi|170030475|ref|XP_001843114.1| ribosomal RNA large subunit methyltransferase J [Culex
quinquefasciatus]
gi|167867355|gb|EDS30738.1| ribosomal RNA large subunit methyltransferase J [Culex
quinquefasciatus]
Length = 239
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 77/147 (52%), Gaps = 11/147 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS-----LG 62
D F A+ Y RSAFKLL+I ++Y +IKPG +V+D G APG+W Q+A +
Sbjct: 38 DPFVERAKMANYRCRSAFKLLEIDQKYNIIKPGFTVIDCGAAPGSWSQIAVKQSNADGAA 97
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDM 121
P G+V+G+D+ ++ P H T D S +++R+L +K +LSDM
Sbjct: 98 PGKPKGTVIGVDLLQI-YPIAHATTLGNT---DFTRTESQDKIRSLL-GEKRIDCVLSDM 152
Query: 122 CPSVSGITTKDAALSVELGMRAVDLAL 148
P+ +G+ + D + L + A+
Sbjct: 153 APNATGVRSLDQENIITLCYSVLRFAI 179
>gi|397662197|ref|YP_006502897.1| RNA large subunit methyltransferase E [Taylorella equigenitalis
ATCC 35865]
gi|394350376|gb|AFN36290.1| RNA large subunit methyltransferase E [Taylorella equigenitalis
ATCC 35865]
Length = 210
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+AFKL++I KL+ G ++DLG +PG+W QVA + L L NG
Sbjct: 17 DPYVKLAQQKGYRARAAFKLIEILDTEKLMHRGDIIVDLGSSPGSWSQVARERL--LKNG 74
Query: 68 ---GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS---VILSDM 121
G ++ +D+ +P H + V+ + D + ++AL K GF +++SDM
Sbjct: 75 VIDGRIIALDL----LPMEHIEG-VEFIQGDFRD--ETILKALEEKV-GFQQVDLVISDM 126
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
P++SGI++ D+A + AV+ A + LKP G L++K
Sbjct: 127 APNLSGISSADSARIQHVVELAVEFA------------------TNHLKPQGALIVK 165
>gi|383759178|ref|YP_005438163.1| ribosomal RNA large subunit methyltransferase J [Rubrivivax
gelatinosus IL144]
gi|381379847|dbj|BAL96664.1| ribosomal RNA large subunit methyltransferase J [Rubrivivax
gelatinosus IL144]
Length = 226
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGP---- 63
D + + AQR GY +R+A+KL +I + + LI+PG +DLG PGAW Q + P
Sbjct: 20 DPYVKAAQREGYRSRAAYKLKEIDEAFALIRPGQVAVDLGATPGAWSQYLRRRFAPEGAA 79
Query: 64 ---LDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116
LD G+++ +D+ + V L D R V+A + A + +
Sbjct: 80 AGALD--GTIIALDILDFEPIEGVTFLQGDFREDEVAARL---------AAELAGRPVDI 128
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLAL 148
++SDM P++SGI DAA L AV+ AL
Sbjct: 129 VVSDMAPNLSGIPVSDAARVAHLVELAVEFAL 160
>gi|351728204|ref|ZP_08945895.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax radicis N35]
Length = 220
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A + G+ AR+A+KL +I +Q LIKPG +V+DLG PGAW Q + + P
Sbjct: 21 DTYVKLAHKEGFRARAAYKLKEIDEQLGLIKPGYTVVDLGSTPGAWSQYLRRRMSPAGAA 80
Query: 68 -----GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
G+++ +D+ ++ V ++ D R ADV+ + K V++
Sbjct: 81 AGQLNGTIIALDLLPMEPIEGVTYINGDFR----EADVLGRLEAALDG-----KVVDVVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SGI + DAA L AV+ A LKP G LV+K
Sbjct: 132 SDMAPNLSGIESADAARIAHLVELAVEFACNH------------------LKPDGALVVK 173
Query: 179 LLE 181
L
Sbjct: 174 LFH 176
>gi|336449999|ref|ZP_08620456.1| 23S rRNA methylase [Idiomarina sp. A28L]
gi|336283156|gb|EGN76363.1| 23S rRNA methylase [Idiomarina sp. A28L]
Length = 209
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G +R+ FKL +IQK+ K+++PG +V+DLG APG W Q D
Sbjct: 20 DQYVQKAQKQGLRSRAVFKLEEIQKRDKILRPGQTVVDLGAAPGGWSQYVA---AMQDGS 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ ++ V L D R + V+N N++ + V+LSDM P
Sbjct: 77 GEVIACDILEMDPIAGVEFLQGDFREEA----VLNALLNRIGGAT-----VDVLLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SG D S+ L V+LAL VLKPGG V+K+ + +
Sbjct: 128 NFSGTDAVDQPRSMYL----VELAL--------------EMCKQVLKPGGAFVVKVFQGE 169
>gi|42519983|ref|NP_965898.1| ribosomal RNA large subunit methyltransferase J [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|81652913|sp|Q73IS9.1|RLME_WOLPM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|42409720|gb|AAS13832.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Drosophila melanogaster]
Length = 192
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++ + GY +RSA+KL+++ ++KL + G ++DLG +PG W QVA Q G
Sbjct: 3 DQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQ------KG 56
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VV +D+K + + V+ + D+IN ++ K + F VILSDM P G
Sbjct: 57 ANVVALDIKPMNAIN-----GVEFIQCDIIN--EFEILREKFKDQKFDVILSDMAPESCG 109
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ + D + L A++ A L GG V+K+ + +
Sbjct: 110 LKSLDHIRIMLLCEAALNFA------------------KHFLSHGGTFVVKIFQGE 147
>gi|167526100|ref|XP_001747384.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774219|gb|EDQ87851.1| predicted protein [Monosiga brevicollis MX1]
Length = 302
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 34/185 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR+A+ GY ARSAFKLLQ+ +++ + + V+DL APG+W QV Q L P +N
Sbjct: 10 DIYYRQAKEEGYRARSAFKLLQLDEEFDIFRNVERVVDLCAAPGSWSQVLSQKLRPTEND 69
Query: 68 G-SVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-VILSDM 121
+V +D++ + V + D + + +++ G++ +++SD
Sbjct: 70 RVKIVAVDLQAMAPLPGVIQMQGDITKEATAQEIVQHFDG----------GYADLVVSDG 119
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P V+G+ D + +L + A++++ + VLK GG + K+
Sbjct: 120 APDVTGLHDIDEYVQSQLILAALNIS------------------THVLKRGGTFIAKIFR 161
Query: 182 SQDAQ 186
+D Q
Sbjct: 162 GRDVQ 166
>gi|99034839|ref|ZP_01314753.1| hypothetical protein Wendoof_01000429 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 192
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++ + GY +RSA+KL+++ ++KL + G ++DLG +PG W QVA Q G
Sbjct: 3 DQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQ------KG 56
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VV +D+K + + V+ + D+IN ++ K + F VILSDM P G
Sbjct: 57 ANVVALDIKPMNAIN-----GVEFIQCDIIN--EFEILREKFKDQKFDVILSDMAPESCG 109
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ + D + L A++ A L GG V+K+ + +
Sbjct: 110 LKSLDHIRIMLLCEAALNFA------------------KHFLSHGGTFVVKIFQGE 147
>gi|156402433|ref|XP_001639595.1| predicted protein [Nematostella vectensis]
gi|156226724|gb|EDO47532.1| predicted protein [Nematostella vectensis]
Length = 306
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D FY A+ GY ARSAFKL+Q+ +++ ++ ++DL APG WLQVA + +
Sbjct: 8 GKRRKDKFYHLAKETGYRARSAFKLIQLNRKFGFLQKSRCLIDLCAAPGGWLQVASKFM- 66
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
P+ +VG+D+ +K V T + D+ Q+ K +L+D
Sbjct: 67 PM--SSIIVGVDLVPIKPIK-----NVITFTEDITTERCKQLLKKELKTWKADCVLNDGA 119
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+V +DA EL + A+ LA LK GG + K+ S
Sbjct: 120 PNVGTAWVQDAFTQAELTLSALKLACEN------------------LKEGGWFITKVFRS 161
Query: 183 QDAQ 186
+D Q
Sbjct: 162 KDYQ 165
>gi|288958935|ref|YP_003449276.1| cell division protein methyltransferase [Azospirillum sp. B510]
gi|288911243|dbj|BAI72732.1| cell division protein methyltransferase [Azospirillum sp. B510]
Length = 235
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EA + GY +R+AFKLLQ+ ++++L+ PG V+DLG APG W Q+A + + G
Sbjct: 39 DPYVAEATKRGYRSRAAFKLLQLDEKFRLLGPGKRVVDLGAAPGGWTQIAVEKVQVAREG 98
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSV 125
VVG+D+ + VP T+ AD L L G ++LSDM
Sbjct: 99 WKVVGLDILPMDPVPG------ATTMQADF--LEEGAADRLKEALGGPADLVLSDMAAPT 150
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D + L A D A VL PGG V KL +
Sbjct: 151 TGHQQTDHLRIMGLAEAAYDFA------------------EEVLAPGGAFVAKLFQ 188
>gi|94311127|ref|YP_584337.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
gi|143461257|sp|Q1LLA8.1|RLME_RALME RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|93354979|gb|ABF09068.1| 23S rRNA methyltransferase [Cupriavidus metallidurans CH34]
Length = 221
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 37/186 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I Q KLI+PG ++DLG APG+W Q A L
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDDQDKLIQPGQVIVDLGAAPGSWSQYARNKLAASPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115
G +D G+VV ID+ ++ V + D R + V + QV +
Sbjct: 77 KDGRID--GAVVAIDILPMEPVADVTFIQGDFREEEVFRQL-----EQVVLDASGGSRID 129
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175
+++SDM P++SG+ + DAA L A+D A LKP G L
Sbjct: 130 LVISDMAPNLSGVASADAARIEYLCDLALDFA------------------QAHLKPEGSL 171
Query: 176 VIKLLE 181
++K
Sbjct: 172 LVKCFH 177
>gi|304321737|ref|YP_003855380.1| 23S rRNA methylase [Parvularcula bermudensis HTCC2503]
gi|303300639|gb|ADM10238.1| 23S rRNA methylase [Parvularcula bermudensis HTCC2503]
Length = 244
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 91/177 (51%), Gaps = 33/177 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+ G+ +R+A+KLL++ +++ L++PG+ V+DLG APG W QVA +++ P G
Sbjct: 50 DPYVARARAEGFRSRAAYKLLELDEKFGLLRPGARVVDLGAAPGGWSQVAGRAVLP---G 106
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRAL--SPKQKGFSVILSDMCPS 124
G VVGID + +P L V + AD ++ + ++RA+ P ++LSDM
Sbjct: 107 GQVVGIDY--LDMPPLDG---VTLLKADFLDEDTPGRLRAVLGGPAH----LVLSDMAAP 157
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G + D V L A+D A VL PGG V K+L+
Sbjct: 158 TTGHKSTDHLRIVALAEAALDFA------------------ETVLAPGGGYVAKVLQ 196
>gi|319406133|emb|CBI79772.1| cell division protein ftsJ [Bartonella sp. AR 15-3]
Length = 240
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 32/168 (19%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
GY +RSA+KL++I ++YK+ K G V+DLG APG W QV + + D SVVGID
Sbjct: 53 GYRSRSAYKLIEIDERYKIFKKGQKVIDLGAAPGGWCQVVSRKVASTDQKPSVVGIDYLA 112
Query: 78 VK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA 133
+ V L D + ++N Q ++LSDM +G D
Sbjct: 113 MDPLPGVIVLKMDFLCEDAPQKLMNALETQP----------DIVLSDMAAPTTGHRKTDH 162
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++ L A D AL VLK GGH + K +
Sbjct: 163 LRTMYLCEMAADFAL------------------SVLKTGGHFLAKAFQ 192
>gi|218888283|ref|YP_002437604.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|226703295|sp|B8DNJ4.1|RLME_DESVM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|218759237|gb|ACL10136.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 201
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 13/143 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A++ Y ARS +KL +I ++KL + G VLDLG APG+W A + +GP
Sbjct: 6 DHYFLKAKQENYPARSIYKLKEIDNRFKLFRQGMKVLDLGAAPGSWSLGAAERVGP---K 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLP---SNQVRALSPKQKGFSVILSDMCPS 124
G V+ D++ V + DV N + + A+ P F V++SDM P
Sbjct: 63 GRVLACDLQTTDT---QFPPNVTFMQEDVFNRSEAFEDALAAMGP----FHVVISDMAPR 115
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
+G D A S+EL + A+ +A
Sbjct: 116 TTGTRFTDQARSLELCIEALAVA 138
>gi|390604798|gb|EIN14189.1| hypothetical protein PUNSTDRAFT_129823 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 873
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYGFLESARCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P+++ +VG+D+ +K +P RV T ++D+ + K V+L D
Sbjct: 68 -PVNS--LIVGVDLVPIKPIP------RVVTFASDITTPQCRNLIRSELKDWKADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 119 GAPNVGTAWVQDAYSQSELVLMSLKLAV 146
>gi|326317394|ref|YP_004235066.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323374230|gb|ADX46499.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 218
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 36/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN- 66
D + + AQ+ GY AR+A+KL +I + LI+PG V+DLG APGAW Q + + P
Sbjct: 21 DTYVKLAQKEGYRARAAYKLKEIDETLGLIRPGQVVVDLGSAPGAWSQYLRRRMAPAGAA 80
Query: 67 ----GGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
G+++ +D+ ++ V L D R + V A + + + + V++
Sbjct: 81 TGQLNGTLIALDILPMEPIEGVTFLQGDFREEDVLARLQE---------TVQGRPVDVVV 131
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM P++SG+ + DA L AVD A LKP G LV+K
Sbjct: 132 SDMAPNLSGVESVDAVRIAHLIELAVDFA------------------QQHLKPDGALVVK 173
Query: 179 LLE 181
L
Sbjct: 174 LFH 176
>gi|308467426|ref|XP_003095961.1| hypothetical protein CRE_06935 [Caenorhabditis remanei]
gi|308244230|gb|EFO88182.1| hypothetical protein CRE_06935 [Caenorhabditis remanei]
Length = 331
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 27/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ + ARSAFKL+QI +++++K +DL APG+W QV + L D
Sbjct: 10 DIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRLFEEDKE 69
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
+V ID++ + +P V + D+ ++ + NQV K +++ D P V
Sbjct: 70 AKIVAIDLQPMAPIPG------VIQLQGDITSVDTANQVIEHFSGDKS-DIVICDGAPDV 122
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
+GI + D + EL + A ++ S VL+PGG+ + K+ S+++
Sbjct: 123 TGIHSLDEFMQAELILAAFNIT------------------SHVLRPGGNFLAKIFRSRNS 164
>gi|319778416|ref|YP_004129329.1| cell division protein FtsJ [Taylorella equigenitalis MCE9]
gi|317108440|gb|ADU91186.1| Cell division protein FtsJ [Taylorella equigenitalis MCE9]
Length = 210
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+AFKL++I KL+ G ++DLG +PG+W QVA + L L NG
Sbjct: 17 DPYVKLAQQKGYRARAAFKLIEILDAEKLMHRGDIIVDLGSSPGSWSQVARERL--LKNG 74
Query: 68 ---GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS---VILSDM 121
G ++ +D+ +P H + V+ + D + ++AL K GF +++SDM
Sbjct: 75 VIDGRIIALDL----LPMEHIEG-VEFIQGDFRD--ETILKALEEKV-GFQQVDLVISDM 126
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
P++SGI++ D+A + AV+ A + LKP G L++K
Sbjct: 127 APNLSGISSADSARIQHVVELAVEFA------------------TNHLKPQGALIVK 165
>gi|68074303|ref|XP_679066.1| methyltransferase [Plasmodium berghei strain ANKA]
gi|56499717|emb|CAH95392.1| methyltransferase, putative [Plasmodium berghei]
Length = 978
Score = 73.6 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y+ A+ GY ARSAFKL+QI ++Y + K + ++DL APG WLQVA ++ ++
Sbjct: 13 DKYYKLAKSAGYRARSAFKLIQIARKYNIFKNANILIDLCAAPGGWLQVAYKN---MNKN 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
+++G+D+ VP D V T+ +D+ + +++ + +K VIL+D P+V
Sbjct: 70 STIIGVDL----VPIRKIDNNVITIKSDITSAECIKKIKDIIQYEKA-DVILNDGAPNVG 124
Query: 127 GITTKDAALSVELGMRAVDLA 147
+ D+ L + ++ LA
Sbjct: 125 TTYSYDSFNQNILVLSSIKLA 145
>gi|402566922|ref|YP_006616267.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Burkholderia cepacia GG4]
gi|402248119|gb|AFQ48573.1| Cell division protein FtsJ / Ribosomal RNA large subunit
methyltransferase E [Burkholderia cepacia GG4]
Length = 220
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 90/188 (47%), Gaps = 48/188 (25%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLI+PG ++DLG PG+W Q A L
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNKLAQGKKR 76
Query: 62 -----GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112
G +D G++V +D+ ++ V L D R TV + L +
Sbjct: 77 DAEREGGID--GTIVALDILPMEPIADVHFLQGDFREDTV-----------LHQLEEVLE 123
Query: 113 GFSV--ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLK 170
G SV ++SDM P++SG+ + DAA L DLAL A LK
Sbjct: 124 GRSVDLVISDMAPNLSGVASADAARIEHL----CDLALEFA--------------QNHLK 165
Query: 171 PGGHLVIK 178
P G L++K
Sbjct: 166 PDGALLVK 173
>gi|333893352|ref|YP_004467227.1| 23S rRNA methyltransferase J [Alteromonas sp. SN2]
gi|332993370|gb|AEF03425.1| 23S rRNA methyltransferase J [Alteromonas sp. SN2]
Length = 209
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G +R+ FKL +IQ++ KLI G++V+DLG APG W Q+A + + +
Sbjct: 20 DHYVQKAQKQGKRSRAFFKLEEIQQKDKLISKGNTVVDLGAAPGGWSQLASE---LVRDN 76
Query: 68 GSVVGIDV----KKVKVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G V+ D+ V V L D R + V ++N + N V ++LSDM
Sbjct: 77 GQVIACDILPMDSIVGVDFLQGDFRDEAVLNALLNRIGGNTV----------DIVLSDMA 126
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D A S+ L A+D+ VLKPGG +IK+ +
Sbjct: 127 PNLSGNAAVDQAGSMYLCELALDMC------------------HQVLKPGGGFMIKVFQG 168
Query: 183 Q 183
+
Sbjct: 169 E 169
>gi|71396836|ref|XP_802426.1| FtsJ cell division protein [Trypanosoma cruzi strain CL Brener]
gi|70862921|gb|EAN80980.1| FtsJ cell division protein, putative [Trypanosoma cruzi]
Length = 211
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKL+Q+ ++Y + ++DL APG W QVA + + P+ G
Sbjct: 14 DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAKHM-PV--G 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VG+D+ VP V+T D+ + + ++ K++ ++ D P+V G
Sbjct: 71 SKIVGVDL----VPIAPIRG-VKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGG 125
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++D L + A +A + +LKP G V K+ SQD
Sbjct: 126 VWSRDLFEQNALVLHAAKMA------------------ASMLKPSGWFVTKVFRSQD 164
>gi|229586405|ref|YP_002844906.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia africae
ESF-5]
gi|259494569|sp|C3PMK3.1|RLME_RICAE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|228021455|gb|ACP53163.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia africae
ESF-5]
Length = 227
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 30/167 (17%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN--GGSVVGIDV 75
G+ +R+A+KLL+I +++KL P ++DLG APG W QVA + + DN ++ IDV
Sbjct: 45 GFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDV 104
Query: 76 KKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCPSVSGITTKDA 133
+++ H A V+ V D + + ++AL + +++SDM + G D
Sbjct: 105 LEIE----HV-AGVEFVQKDFFEADTEELIIQALDGRA---DIVMSDMASNTIGHKATDH 156
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++ L +A + AL VLKP GH + K+
Sbjct: 157 IRTLLLCEQAFEFAL------------------KVLKPSGHFIAKIF 185
>gi|157169535|ref|XP_001657887.1| ribosomal RNA methyltransferase [Aedes aegypti]
gi|108883667|gb|EAT47892.1| AAEL001037-PA [Aedes aegypti]
Length = 852
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 28/178 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY+ A+ GY +R+AFKL+Q+ +++ ++ +DL APG W+QVA Q++ P+ +
Sbjct: 13 DKFYKLAKETGYRSRAAFKLIQLNRRFGFLQQSQVCIDLCAAPGGWMQVAKQNM-PVSS- 70
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
V+GID+ +K VP C + V +++D S+ + L K V+L+D P+V
Sbjct: 71 -VVIGIDLFPIKNVPG--CISLVGDITSD--KTKSDLAKEL--KTWKADVVLNDGAPNVG 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
DA V L + AV LA + L+PGG V K+ S+D
Sbjct: 124 RNWLFDAYQQVCLTLSAVKLA------------------TQFLRPGGWFVTKVFRSKD 163
>gi|429210168|ref|ZP_19201335.1| ribosomal RNA large subunit methyltransferase E [Pseudomonas sp.
M1]
gi|428158942|gb|EKX05488.1| ribosomal RNA large subunit methyltransferase E [Pseudomonas sp.
M1]
Length = 207
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY +R+++KLL+IQ++ ++++PG +V+DLG APG W QV + +G +
Sbjct: 17 DPYVKMAQRDGYRSRASYKLLEIQEKDRILRPGMTVVDLGAAPGGWSQVTSRVIG---DK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G+++ D+ + V + D V A ++ + N V +++SDM
Sbjct: 74 GTLIASDILPMDSIPDVTFIQGDFTEDEVFARLLEAIGENPV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DL + VL+PGG +IK+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLC------------------ARVLRPGGDFLIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|298290958|ref|YP_003692897.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Starkeya novella DSM
506]
gi|296927469|gb|ADH88278.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Starkeya novella DSM
506]
Length = 236
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 26/175 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R G+ +R+AFKLL+I + KL+KPG V+DLG APG W QVA Q + +
Sbjct: 40 DPYVARAKREGWRSRAAFKLLEIDDKLKLLKPGLRVVDLGAAPGGWSQVAAQRVKATEGR 99
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV ID+ ++ +P++ A++ + + P L + V+LSDM + +
Sbjct: 100 GKVVAIDLLEIDPIPAVDF-AQLDFLKDEA---PDRLKEMLGGEA---DVVLSDMAANTT 152
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D V L A+D A VL PGG V K+ +
Sbjct: 153 GHRATDHLRIVGLVELAIDFA------------------RQVLSPGGAFVAKVFQ 189
>gi|119471556|ref|ZP_01613970.1| 23S rRNA methyltransferase [Alteromonadales bacterium TW-7]
gi|359449944|ref|ZP_09239415.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20480]
gi|119445499|gb|EAW26785.1| 23S rRNA methyltransferase [Alteromonadales bacterium TW-7]
gi|358044257|dbj|GAA75664.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20480]
Length = 209
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL ++Q + KL++PG +V+DLG APG+W Q + +G +
Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEVQNRDKLLRPGMTVVDLGAAPGSWSQYLAEKVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ + V L D R + V ++ K V+LSDM P
Sbjct: 77 GQVVACDILPMDSLAGVDFLQGDFREEAVLDALLKRIDG---------KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D A S+ L A+D+ + VLK G ++K+ + +
Sbjct: 128 NMSGNNSVDQAGSMYLVELALDMC------------------NQVLKKNGAFIVKVFQGE 169
>gi|383483549|ref|YP_005392462.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia parkeri
str. Portsmouth]
gi|378935903|gb|AFC74403.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia parkeri
str. Portsmouth]
Length = 227
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 30/167 (17%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN--GGSVVGIDV 75
G+ +R+A+KLL+I +++KL P ++DLG APG W QVA + + DN ++ IDV
Sbjct: 45 GFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDV 104
Query: 76 KKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCPSVSGITTKDA 133
+++ H A V+ V D + + ++AL + +++SDM + G D
Sbjct: 105 LEIE----HV-AGVEFVQKDFFEADTEELIIQALDGRA---DIVMSDMASNTIGHKATDH 156
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++ L +A + AL VLKP GH + K+
Sbjct: 157 IRTLLLCEQAFEFAL------------------KVLKPSGHFIAKIF 185
>gi|148255007|ref|YP_001239592.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. BTAi1]
gi|158513280|sp|A5EHP2.1|RLME_BRASB RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|146407180|gb|ABQ35686.1| 23S rRNA Um-2552 2'-O-methyltransferase [Bradyrhizobium sp. BTAi1]
Length = 231
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 32/179 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+ +KL++I +Y L+KPG +V+DLG APG W Q+A + +G
Sbjct: 33 DPYVAQAKRDGYRSRATYKLIEIDDKYHLLKPGMTVVDLGAAPGGWSQIAARRVGAEAGK 92
Query: 68 GSVVGIDVKKV-KVPSL---HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ ID+ ++ +VP + D Q + P ++RA+ + V++SDM
Sbjct: 93 GKVIAIDLLEMGEVPGVTFTQMDFHAQ-------DAP-EKLRAMLGGRA--DVVMSDMAA 142
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+ +G D +R V L A A VLKPGG + K +S
Sbjct: 143 NTTGHRKTDQ-------LRIVGLVELAAHFAGE-----------VLKPGGSFLAKTFQS 183
>gi|410984275|ref|XP_003998455.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Felis catus]
Length = 246
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 11/146 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGP--LD 65
D F + A+ Y RSAFKLL++ +++++++PG VLD G APGAW QVA QS+ D
Sbjct: 41 DPFVKAAKVESYRCRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQSVNAAGAD 100
Query: 66 NG---GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
G G V+G+D+ + + ADV + + Q VR L P + VILSDM
Sbjct: 101 PGAPVGFVLGVDLLHI----FPLEGATFLSPADVTDPRTVQRVRELLPGGRA-DVILSDM 155
Query: 122 CPSVSGITTKDAALSVELGMRAVDLA 147
P+ +GI + D + L +D+A
Sbjct: 156 APNATGIRSLDHDRLISLCSSLLDVA 181
>gi|15892128|ref|NP_359842.1| cell division protein ftsJ [Rickettsia conorii str. Malish 7]
gi|34580841|ref|ZP_00142321.1| cell division protein ftsJ [Rickettsia sibirica 246]
gi|374318946|ref|YP_005065444.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia slovaca
13-B]
gi|379018710|ref|YP_005294944.1| cell division protein ftsJ [Rickettsia rickettsii str. Hlp#2]
gi|379711947|ref|YP_005300286.1| cell division protein ftsJ [Rickettsia philipii str. 364D]
gi|383750844|ref|YP_005425945.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia slovaca
str. D-CWPP]
gi|81528508|sp|Q92J64.1|RLME_RICCN RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|15619256|gb|AAL02743.1| cell division protein ftsJ [Rickettsia conorii str. Malish 7]
gi|28262226|gb|EAA25730.1| cell division protein ftsJ [Rickettsia sibirica 246]
gi|360041494|gb|AEV91876.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia slovaca
13-B]
gi|376328592|gb|AFB25829.1| cell division protein ftsJ [Rickettsia philipii str. 364D]
gi|376331290|gb|AFB28524.1| cell division protein ftsJ [Rickettsia rickettsii str. Hlp#2]
gi|379773858|gb|AFD19214.1| Ribosomal RNA large subunit methyltransferase J [Rickettsia slovaca
str. D-CWPP]
Length = 227
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 30/167 (17%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN--GGSVVGIDV 75
G+ +R+A+KLL+I +++KL P ++DLG APG W QVA + + DN ++ IDV
Sbjct: 45 GFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDV 104
Query: 76 KKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCPSVSGITTKDA 133
+++ H A V+ V D + + ++AL + +++SDM + G D
Sbjct: 105 LEIE----HV-AGVEFVQKDFFEADTEELIIQALDGRA---DIVMSDMASNTIGHKATDH 156
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++ L +A + AL VLKP GH + K+
Sbjct: 157 IRTLLLCEQAFEFAL------------------KVLKPSGHFIAKIF 185
>gi|320032551|gb|EFW14503.1| cell division protein ftsj [Coccidioides posadasii str. Silveira]
Length = 321
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 92/239 (38%), Gaps = 66/239 (27%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++REA G +R+AFKLLQI Y++ +PG +V+DLG APG+W QVA P
Sbjct: 43 DIYWREANLRGLKSRAAFKLLQINNHYRIFEPGQTVVDLGYAPGSWSQVAVDLTHP---N 99
Query: 68 GSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLP-------------------- 100
G V+GID+ + P R+Q + + P
Sbjct: 100 GRVLGIDIIPAQPPKGVSTIQGNFLSPRIQAYIREFLRNPDRGRPLREELCSRTPQKTWT 159
Query: 101 SNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALG----------- 149
+N+V P G+ D+ +S + + E G VD+ L
Sbjct: 160 ANEVETFEP---GYIDRERDVSERISREPCDEHSPQTEAGEGTVDVVLSDMSAPWKLTTG 216
Query: 150 --PAALASPVNNSDSSTDSG--------------------VLKPGGHLVIKLLESQDAQ 186
+L P N +++ G VLKPGGH + K + + Q
Sbjct: 217 YWKRSLNDPYNRMMNTSGLGFRDHARSMDLCNAAVNFSYDVLKPGGHFICKFYQGNEDQ 275
>gi|307353428|ref|YP_003894479.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoplanus
petrolearius DSM 11571]
gi|307156661|gb|ADN36041.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanoplanus
petrolearius DSM 11571]
Length = 199
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 30/176 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +++ GY +R+A+KLL IQK++ +I+ +++DLG APG+W+QV
Sbjct: 8 DKYYNKSRSEGYRSRAAYKLLDIQKRFGIIRDDDNIVDLGAAPGSWMQVLRDM-----TS 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G++VG+D+ P + +Q ++ D Q + +S + +V++ D P +SG
Sbjct: 63 GAIVGVDLN----PIAPIENTIQ-ITGD-FTTEKIQEKIISHIHE-VNVVVCDASPKLSG 115
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D A ++ L A + A VLKPGG+ VIK + +
Sbjct: 116 SKSYDQARAIGLNHEAFEFA------------------RRVLKPGGNFVIKSFQGE 153
>gi|336369156|gb|EGN97498.1| hypothetical protein SERLA73DRAFT_110750 [Serpula lacrymans var.
lacrymans S7.3]
Length = 871
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYSFLESARCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P ++ ++G+D+ +K +P RV T ++D+ + K V+L D
Sbjct: 68 -PANS--VIIGVDLVAIKPIP------RVVTFASDITTPQCRNLIRSEVKDWKADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 119 GAPNVGTAWIQDAYSQSELVLMSLKLAV 146
>gi|268575120|ref|XP_002642539.1| Hypothetical protein CBG20162 [Caenorhabditis briggsae]
Length = 331
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 27/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ + ARSAFKL+QI +++++K + +DL APG+W QV + L D
Sbjct: 10 DIYYRLAKENKWRARSAFKLMQIDDEFQILKGVTRAVDLCAAPGSWSQVLSKRLYEEDEK 69
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
+V ID++ + +P V + D+ ++ + NQV +K +++ D P V
Sbjct: 70 AKIVAIDLQPMAPIPG------VIQLQGDITSVETANQVIEHFSGEKA-DIVICDGAPDV 122
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
+GI + D + EL + A ++ S VLK GG+ + K+ S+++
Sbjct: 123 TGIHSLDEFMQAELILAAFNIT------------------SHVLKNGGNFLAKIFRSRNS 164
>gi|146340136|ref|YP_001205184.1| ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 278]
gi|158514219|sp|A4YSS3.1|RLME_BRASO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|146192942|emb|CAL76949.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 278]
Length = 231
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 32/179 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+ +KL++I +Y ++KPG +V+DLG APG W Q+A + +G
Sbjct: 33 DPYVAQAKRDGYRSRATYKLIEIDDKYHMLKPGMTVVDLGAAPGGWSQIAARRVGAEAGK 92
Query: 68 GSVVGIDVKKV-KVPSL---HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV ID+ ++ ++P + D Q + + + V++SDM
Sbjct: 93 GKVVAIDLLEMGEIPGVTFAQLDFHAQDAPEKLRTMIGGRA----------DVVMSDMAA 142
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+ +G D +R V L A A VLKPGG + K +S
Sbjct: 143 NTTGHRKTDQ-------LRIVGLVELAAHFAGE-----------VLKPGGSFLAKTFQS 183
>gi|118369700|ref|XP_001018053.1| FtsJ-like methyltransferase family protein [Tetrahymena
thermophila]
gi|89299820|gb|EAR97808.1| FtsJ-like methyltransferase family protein [Tetrahymena thermophila
SB210]
Length = 947
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D Y A+ GY +R+ FKL+QI K+Y ++ ++V+DL APG WLQVA + P+
Sbjct: 13 DVHYYMAKEYGYRSRACFKLIQINKKYGFLEKANAVIDLCAAPGGWLQVAAK-FCPVT-- 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+ +G+D+ +K P VQ ++A V + Q+ K V+L+D P+V
Sbjct: 70 CTKIGLDLVPIK-PIPGVKTYVQDITAPV----TYQLLKRELKGGKADVVLNDGAPNVGA 124
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
KDA +EL + A+ LA+ L+ GG V K+ S+D
Sbjct: 125 NWQKDAFNQIELTLAALKLAV------------------NFLRRGGTFVTKVFRSKD 163
>gi|422021002|ref|ZP_16367516.1| 23S rRNA methyltransferase J [Providencia sneebia DSM 19967]
gi|414099907|gb|EKT61540.1| 23S rRNA methyltransferase J [Providencia sneebia DSM 19967]
Length = 209
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ G +R+ FKL +IQ+ K+ KPG +V+DLG APG W Q +G N
Sbjct: 20 DKFVQQAQKKGLRSRAWFKLDEIQQGDKIFKPGMTVVDLGAAPGGWSQYVVSQIG---NN 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ V V L D R + V A ++ +K V++SDM P
Sbjct: 77 GRVIACDLLPMDPIVGVDFLQGDFRDEAVLAALLERVG---------EKKVQVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D S+ L A+D+ VL PGG ++K+ + +
Sbjct: 128 NMSGTPAVDIPRSMYLVELALDMC------------------RTVLAPGGSFIVKVFQGE 169
>gi|374263768|ref|ZP_09622315.1| ribosomal RNA large subunit methyltransferase J [Legionella
drancourtii LLAP12]
gi|363535890|gb|EHL29337.1| ribosomal RNA large subunit methyltransferase J [Legionella
drancourtii LLAP12]
Length = 206
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 36/179 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL ++ ++ L+KPG +V+DLG APG W Q + +
Sbjct: 17 DVYVKKAQAEGYRSRAVYKLKEVDEKESLLKPGMTVVDLGAAPGGWTQYVSER---MQGR 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINL-PSNQVRALSPKQKGFSVILSDMC 122
G ++ +D+ + V + D R V ++NL P V ++LSDM
Sbjct: 74 GHIIALDILPMDSLPDVDVILGDFREDEVLQKLMNLIPERSV----------DLLLSDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P++SG T A+ + M V+LA A +LKPGG ++IK+
Sbjct: 124 PNMSGTT----AIDIPRAMYLVELAFDFA--------------EKMLKPGGSMLIKVFH 164
>gi|157820165|ref|NP_001100595.1| putative ribosomal RNA methyltransferase 2 [Rattus norvegicus]
gi|149035019|gb|EDL89739.1| rCG42633 [Rattus norvegicus]
Length = 246
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 29/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL--D 65
D F + A+ Y RSAFKLL++ +++ +++PG VLD G APGAW QVA QS+ D
Sbjct: 41 DPFVKAAKAESYRCRSAFKLLEMNEKHHILRPGLRVLDCGAAPGAWSQVAVQSVNATGAD 100
Query: 66 NG---GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
+ G V+G+D+ + ADV + + Q + L P+++ VILSDM
Sbjct: 101 SSSPMGFVLGVDLLHM----FPLAGATFLCPADVTDPRTFQRILELLPRRRA-DVILSDM 155
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
P+ +GI D + L + VD+A+ +L PGG L+ K
Sbjct: 156 APNATGIRDLDHDRLISLCLTLVDMAV------------------DILHPGGTLLCK 194
>gi|402085558|gb|EJT80456.1| AdoMet-dependent rRNA methyltransferase SPB1 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 852
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 34/186 (18%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +++
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKTKVLLDLCAAPGSWCQVAAETM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRA-LSPKQKGFSV--IL 118
P+ G ++G+D+ +K +P RV T +D+ + + RA + KG+ V +L
Sbjct: 67 PM--GSLIIGVDLSPIKPIP------RVITFQSDIT---TEKCRATIKQHLKGWKVDTVL 115
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
D P+V +D+ EL ++++ LA + L GG V K
Sbjct: 116 HDGAPNVGTAWVQDSFNQAELTLQSMKLA------------------TEFLVEGGTFVTK 157
Query: 179 LLESQD 184
+ S+D
Sbjct: 158 VFRSKD 163
>gi|209963501|ref|YP_002296416.1| ribosomal RNA large subunit methyltransferase J [Rhodospirillum
centenum SW]
gi|209956967|gb|ACI97603.1| ribosomal RNA large subunit methyltransferase J,RrmJ
[Rhodospirillum centenum SW]
Length = 227
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 29/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EA++ GY +R+AFKLLQ+ +++ ++ G ++DLG APG W QVA + P +
Sbjct: 23 DPYVAEARKRGYRSRAAFKLLQLDEKFHFLRRGQRIVDLGAAPGGWTQVAVAVVKPGEGS 82
Query: 68 -GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPS 124
G VVG+D+ +V+ VP + D ++ + ++++ L Q ++LSDM +
Sbjct: 83 TGKVVGLDLLEVEPVPG------ATIIQLDFLDASAPDRLKELLGGQA--DIVLSDMAAN 134
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D + L A D A + VL PGG V KL +
Sbjct: 135 TTGHPATDHLRIIGLAEAAYDFA------------------ADVLAPGGAFVCKLFQ 173
>gi|126729852|ref|ZP_01745665.1| ribosomal RNA large subunit methyltransferase J [Sagittula stellata
E-37]
gi|126709971|gb|EBA09024.1| ribosomal RNA large subunit methyltransferase J [Sagittula stellata
E-37]
Length = 236
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 39/183 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQ---SLG-- 62
D + + A+ GY R+AFK+L+I ++Y+ + PG+ V+DLGCAPG W QVA + SLG
Sbjct: 40 DPYVKRAKEEGYRGRAAFKILEIDEKYRFLVPGARVVDLGCAPGGWCQVAARRVNSLGEK 99
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGF-----SVI 117
P G V+GID+++V A V+ D + ++ K KG+ V+
Sbjct: 100 PGKAQGFVLGIDLQEVDAI-----AGVELHQLDFLEDGADD------KVKGWLGGSAHVV 148
Query: 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
+SDM + SG D + L A +LA VL+ GG V
Sbjct: 149 MSDMAAASSGHKQTDHLRIITLCEAAAELAF------------------DVLEEGGTFVA 190
Query: 178 KLL 180
K+L
Sbjct: 191 KVL 193
>gi|88602762|ref|YP_502940.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanospirillum
hungatei JF-1]
gi|121697642|sp|Q2FNX6.1|RLME_METHJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|88188224|gb|ABD41221.1| 23S rRNA Um-2552 2'-O-methyltransferase [Methanospirillum hungatei
JF-1]
Length = 207
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D Y +A++ GY +R+A KL +I ++ +I+P ++LDLG APG+WLQV L + N
Sbjct: 8 DKAYLKAKQSGYRSRAAMKLKEIIQKNPVIRPDDNILDLGAAPGSWLQV----LREMTN- 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VG+D+ P L + V+T+ D + + Q+R L P+ G I+ D P +S
Sbjct: 63 GVIVGVDLN----PILPIEG-VRTIIGDFSDPVVIAQIRELMPEVNG---IVCDASPKLS 114
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A ++EL ++ALG A +LK GG++++K + +D
Sbjct: 115 GQRSFDQARAIELN----EMALGVA--------------RQLLKQGGNMIMKSFQGED 154
>gi|343171934|gb|AEL98671.1| FtsJ-like methyltransferase family protein, partial [Silene
latifolia]
Length = 775
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 88/190 (46%), Gaps = 35/190 (18%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
++G D FY A+ GY +R++FK++QI ++ L+ S+LDL APG W+QVA Q
Sbjct: 2 VTGKNRLDKFYHLAKEQGYRSRASFKIIQIDAKFGLLNSSRSILDLCAAPGGWMQVAVQR 61
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQ------KGF 114
P+ G VVGID+ V + + VQ ++ + RA K K F
Sbjct: 62 -APV--GALVVGIDL--VSISPIRGAVSVQE------DITQPKCRATVKKLLSDNGFKAF 110
Query: 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
++L D P+V G ++A L + ++ LA + L P GH
Sbjct: 111 DLVLHDGSPNVGGAWAQEATSQNSLVIDSLKLA------------------TDFLAPRGH 152
Query: 175 LVIKLLESQD 184
V K+ SQD
Sbjct: 153 FVTKVFRSQD 162
>gi|406602803|emb|CCH45677.1| hypothetical protein BN7_5262 [Wickerhamomyces ciferrii]
Length = 219
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ Y +R+AFKLLQI +Y + K G +V+DLG APGAW QVA + + P
Sbjct: 36 DHYTKEAQFQDYKSRAAFKLLQIDDKYDIFKSGQNVVDLGFAPGAWTQVATKRVEP---N 92
Query: 68 GSVVGIDV 75
G+V+G+D+
Sbjct: 93 GNVLGVDI 100
>gi|367475373|ref|ZP_09474836.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 285]
gi|365272386|emb|CCD87304.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. ORS 285]
Length = 231
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+ +KLL+I +Y ++KPG +V+DLG APG W Q+A + +G
Sbjct: 33 DPYVAQAKRDGYRSRATYKLLEIDDKYHMLKPGMTVVDLGAAPGGWSQIAARRVGAEAGK 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ ID+ ++ ++P + + + P ++RA+ + V++SDM + +
Sbjct: 93 GKVIAIDLLEMGEIPGV----TFTQLDFHAEDAP-EKLRAMIGGRA--DVVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L A A VLKPGG + K +S
Sbjct: 146 GHRKTDQ-------LRIVGLVELAAHFAGE-----------VLKPGGSFLAKTFQS 183
>gi|411008248|ref|ZP_11384577.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
aquariorum AAK1]
gi|423195544|ref|ZP_17182127.1| ribosomal RNA large subunit methyltransferase E [Aeromonas
hydrophila SSU]
gi|404633319|gb|EKB29868.1| ribosomal RNA large subunit methyltransferase E [Aeromonas
hydrophila SSU]
Length = 209
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+LG +R+ FK+ +IQ + KL+KPG +V+DLG APG W Q A +G +
Sbjct: 20 DQYVKKAQKLGLRSRAVFKIDEIQGKDKLLKPGMTVVDLGAAPGGWSQFAIDQVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R +TV ++ + P + V++SDM P
Sbjct: 77 GRVIACDILPMDSIAGVDFLQGDFREETVLGALLE-------RVGPDK--VDVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D A S+ L A+D+ + VL+ G V+K+ + +
Sbjct: 128 NMSGTQQVDQARSMYLVELALDMC------------------NQVLRSNGSFVVKVFQGE 169
>gi|220903814|ref|YP_002479126.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868113|gb|ACL48448.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 223
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 31/182 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A+R Y ARS +KL ++ +++L++PG +LDLG APG+W A + +G +
Sbjct: 19 DHYFLKAKRENYPARSVYKLKELDAKFRLLRPGQKILDLGAAPGSWSLGAAEKVG---SR 75
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINL-PSNQVR--ALSPKQKGFSVILSDMCPS 124
G V+ D++ + +V + DV N P+ + R L P F ++SDM P
Sbjct: 76 GLVLACDIQSTETA---FPPQVIFMQEDVFNRSPAFEARLEELGP----FDHVISDMAPR 128
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+G D A S++L + A+ +A LK GG V+K+ D
Sbjct: 129 TTGTRFTDQARSLDLAVEALAVA------------------CLHLKQGGGFVVKIFMGPD 170
Query: 185 AQ 186
Q
Sbjct: 171 VQ 172
>gi|254281755|ref|ZP_04956723.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium NOR51-B]
gi|219677958|gb|EED34307.1| ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium NOR51-B]
Length = 206
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+ +KLL++ ++ +LI+PG +VLDLG APG W QVA +G
Sbjct: 18 DPYVQRAQKEGYRSRACYKLLELNERDRLIRPGMTVLDLGAAPGGWSQVAANLVG---AK 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ + V L D + + ++ L+P Q +++SDM P
Sbjct: 75 GRVVASDILPMDSLAGVTFLQGDFTEEAIYQKLLA-----EFELAPPQ----LVMSDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+T D ++ L A+DLA+ +L PGG V K+ +
Sbjct: 126 NLSGMTAVDQPRAMALVELALDLAV------------------TLLPPGGAFVAKVFHGE 167
>gi|348568364|ref|XP_003469968.1| PREDICTED: putative ribosomal RNA methyltransferase 2-like [Cavia
porcellus]
Length = 255
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 29/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D + + A+ Y RSAFKLL+I K++K+++PG VLD G APGAW QVA +
Sbjct: 50 DPYVKAAKVECYRCRSAFKLLEINKKHKILRPGLRVLDCGAAPGAWSQVAVPRVNATGTD 109
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
P G V+G+D+ + + ADV N + Q + L P K VILSDM
Sbjct: 110 PSSPVGFVLGVDLLHIHP----LEGATFLCPADVTNPKTFQRIMELLPGGKA-DVILSDM 164
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
P+ +GI D + + + +D+A +L PGG L+ K+
Sbjct: 165 APNATGIRDLDHDRLISMCLTLLDMA------------------PDILHPGGTLLCKI 204
>gi|117618251|ref|YP_857802.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|143459211|sp|A0KNF1.1|RLME_AERHH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|117559658|gb|ABK36606.1| ribosomal RNA large subunit methyltransferase J [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 209
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+LG +R+ FK+ +IQ + KL+KPG +V+DLG APG W Q A +G +
Sbjct: 20 DQYVKKAQKLGLRSRAVFKIDEIQGKDKLLKPGMTVVDLGAAPGGWSQFAIDQVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R +TV ++ + P + V++SDM P
Sbjct: 77 GRVIACDILPMDSIAGVDFLQGDFREETVLGALLE-------RVGPDK--VDVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D A S+ L A+D+ + VL+ G V+K+ + +
Sbjct: 128 NMSGTQQVDQARSMYLVELALDMC------------------NQVLRANGSFVVKVFQGE 169
>gi|358389904|gb|EHK27496.1| hypothetical protein TRIVIDRAFT_63244 [Trichoderma virens Gv29-8]
Length = 823
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +LDL APG WLQVA +++
Sbjct: 8 GKGRLDKWYKLAKEKGYRARSAFKLVQLNKKYGFLEKSKVLLDLCAAPGGWLQVAAETM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+++ +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 67 PVNS--LIVGVDLAPIKPIP------RVITFQSDITTDKCRATIRQHFKTWKADAVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +D+ EL + ++ LA + L GG V K+
Sbjct: 119 APNVGTAWAQDSFNQAELALHSLKLA------------------TEFLAEGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|88812982|ref|ZP_01128225.1| 23S rRNA Um2552 2'-O-methyltransferase [Nitrococcus mobilis Nb-231]
gi|88789760|gb|EAR20884.1| 23S rRNA Um2552 2'-O-methyltransferase [Nitrococcus mobilis Nb-231]
Length = 190
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 16/140 (11%)
Query: 12 REAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVV 71
R A + GY +R+ +KLL+I ++ +L+ G +V+DLG APG+W Q + LG G V+
Sbjct: 2 RAAHKQGYRSRAVYKLLEIDQRDRLLHRGMTVIDLGAAPGSWSQYCVERLGA---TGRVI 58
Query: 72 GIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+D+ ++ V L D R ++IN + + ++LSDM P++SG
Sbjct: 59 ALDILPMQPLPGVEVLQADFRDAKTLTELIN---------RVEGRPVHLVLSDMAPNISG 109
Query: 128 ITTKDAALSVELGMRAVDLA 147
+T D ++ L A++LA
Sbjct: 110 VTAIDQPRAMRLAEEALELA 129
>gi|190348381|gb|EDK40824.2| hypothetical protein PGUG_04922 [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 42/185 (22%)
Query: 12 REAQRLGYVARSAFKLLQIQKQYKLIKPGS-SVLDLGCAPGAWLQVACQSLGPLDNGGSV 70
+EA++ Y +R+A+KL+++ ++ L K + ++DLG APGAW QVA Q + L +
Sbjct: 67 KEAKKQHYRSRAAYKLIELDHKFSLFKRNTLRIVDLGFAPGAWTQVAMQRMAQLGQKPKI 126
Query: 71 VGIDVKKVKVPS--------LHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDM 121
+G+D+ +PS LH D + ++ N P+N+V +++SDM
Sbjct: 127 LGVDI----IPSTPPEGAQFLHGDIFSRKTHQEIRDNFPNNEV----------DLVMSDM 172
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SGI D S+EL A+ LA + LK G LV+K
Sbjct: 173 MANTSGIKDNDHLASMELCEGALMLA------------------ASTLKTNGALVMKFYT 214
Query: 182 SQDAQ 186
++ +
Sbjct: 215 GREER 219
>gi|113868416|ref|YP_726905.1| 23S rRNA methylase [Ralstonia eutropha H16]
gi|339326470|ref|YP_004686163.1| ribosomal RNA large subunit methyltransferase E [Cupriavidus
necator N-1]
gi|122946743|sp|Q0K8Y4.1|RLME_CUPNH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|113527192|emb|CAJ93537.1| 23S rRNA methylase [Ralstonia eutropha H16]
gi|338166627|gb|AEI77682.1| ribosomal RNA large subunit methyltransferase E [Cupriavidus
necator N-1]
Length = 221
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 93/186 (50%), Gaps = 37/186 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLI+PG ++DLG APG+W Q A L
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKLADSPRA 76
Query: 62 --GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115
G +D G+VV ID+ ++ V + D R ++V ++ ++ V S K
Sbjct: 77 KDGRID--GAVVAIDLLPMEPVADVTFIQGDFREESVFRELESV----VLDASGGNK-ID 129
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175
++LSDM P++SG+ DAA L DLAL A LKP G L
Sbjct: 130 LVLSDMAPNLSGVAFADAARIEYL----CDLALEFA--------------QAHLKPEGAL 171
Query: 176 VIKLLE 181
++K
Sbjct: 172 LVKCFH 177
>gi|392548520|ref|ZP_10295657.1| 23S rRNA methyltransferase J [Pseudoalteromonas rubra ATCC 29570]
Length = 209
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EAQ+ GY +R+ FKL +IQ++ KL +PG V+DLG APG+W Q + +G
Sbjct: 20 DPYVHEAQKRGYRSRAVFKLEEIQQKDKLFRPGMHVVDLGAAPGSWSQYLAEQVG---EK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V+N ++ K V+ SDM P
Sbjct: 77 GEVIACDILPMDSLPGVAFLQGDFREEA----VLNALMERIGG-----KNIDVVCSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D A S+ L A D+ VLKP G +K+ + +
Sbjct: 128 NMSGNNVIDQAGSMYLVELAFDMC------------------HQVLKPNGAFAVKVFQGE 169
>gi|395831828|ref|XP_003788990.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like
[Otolemur garnettii]
Length = 308
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 25/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ +Q++L + + +DL APG+W QV Q +G G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDEQFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGCG 69
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
VV +D++ + +P V + D+ L + + + +++ D P V+
Sbjct: 70 HVVVAVDLQAMAPIPG------VVQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVT 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 124 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 163
>gi|377821306|ref|YP_004977677.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. YI23]
gi|357936141|gb|AET89700.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. YI23]
Length = 220
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 44/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG PG+W Q A L
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGSTPGSWSQYARNKLAHGAKR 76
Query: 62 -----GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112
G +D G+++ +D+ ++ V + D R V A + + ++
Sbjct: 77 NTEREGGID--GTIIALDILPMEPIADVTFIQGDFREDEVLAQLAEIVG---------ER 125
Query: 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
+++SDM P++SG+ + DAA L DLAL A LKP
Sbjct: 126 QVDLVISDMAPNLSGVASADAARIEHL----CDLALEFA--------------QNHLKPE 167
Query: 173 GHLVIK 178
G L++K
Sbjct: 168 GALLVK 173
>gi|336317269|ref|ZP_08572136.1| 23S rRNA methylase [Rheinheimera sp. A13L]
gi|335878569|gb|EGM76501.1| 23S rRNA methylase [Rheinheimera sp. A13L]
Length = 209
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+LG +R+AFKL +IQ + KLIK G +V+DLG APG+W A + +G
Sbjct: 20 DPFVQKAQKLGLRSRAAFKLDEIQDKDKLIKTGMTVVDLGSAPGSWSARAAELVG---QA 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ + V L D R + V+N ++ + V+LSDM P
Sbjct: 77 GCVVACDILPMDPLAGVAFLQGDFREEA----VLNALLERIGG-----RNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG +T D + S+ L V+LAL NN VLK G V+K+ +
Sbjct: 128 NMSGNSTVDQSRSMYL----VELAL------EMCNN--------VLKKNGSFVVKVFHGE 169
>gi|451853217|gb|EMD66511.1| hypothetical protein COCSADRAFT_112979 [Cochliobolus sativus
ND90Pr]
Length = 358
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%), Gaps = 9/100 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DFF +EA+ G +R+AFKLL++ ++KL +PG +V+DLG APG+W QVA P
Sbjct: 63 DFFAKEARVQGLKSRAAFKLLELNDKHKLFRPGQTVVDLGYAPGSWSQVAVNRTSP---D 119
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVIN-LPSNQVRA 106
G V+GID+ + P V T+ D ++ + +QVRA
Sbjct: 120 GRVIGIDLIPAQPPR-----GVSTIQGDFLSPIIQDQVRA 154
>gi|374366302|ref|ZP_09624383.1| ribosomal RNA large subunit methyltransferase E [Cupriavidus
basilensis OR16]
gi|373102086|gb|EHP43126.1| ribosomal RNA large subunit methyltransferase E [Cupriavidus
basilensis OR16]
Length = 221
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 89/184 (48%), Gaps = 33/184 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----P 63
D + + AQR GY AR+A+KL +I +Q KLI+PG ++DLG APG+W Q A L
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKLAASARA 76
Query: 64 LDNG--GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117
D G G+V+ ID+ ++ V + D R + DV + V S K ++
Sbjct: 77 KDGGIDGAVIAIDLLPMEAVADVTFIQGDFREE----DVFRQLEDVVLQASGGAK-IDLV 131
Query: 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
LSDM P++SG+ DAA L DLAL A LKP G L++
Sbjct: 132 LSDMAPNLSGVAFADAARIDYL----CDLALEFA--------------QAHLKPEGSLLV 173
Query: 178 KLLE 181
K
Sbjct: 174 KCFH 177
>gi|319944197|ref|ZP_08018473.1| ribosomal RNA large subunit methyltransferase J [Lautropia
mirabilis ATCC 51599]
gi|319742492|gb|EFV94903.1| ribosomal RNA large subunit methyltransferase J [Lautropia
mirabilis ATCC 51599]
Length = 239
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 40/192 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR Y AR+AFKL+ I +Q LI+PG +V+DLG APG+W QV + L +
Sbjct: 20 DPYVKLAQRHHYRARAAFKLIGIDEQDHLIRPGMTVVDLGSAPGSWSQVVRRRLAAPNLA 79
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGF------------- 114
V D + + P + R+ V+ D+ LP + ++ Q F
Sbjct: 80 EDVRKADDLRGEAPQVPIQGRI--VALDL--LPMEPIPDVNYLQGDFREQDVLDRLEALL 135
Query: 115 -----SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVL 169
++LSDM P++SG+ D A +L +VD A S L
Sbjct: 136 DGGKVDLVLSDMAPNLSGVGVADTARMQDLAELSVDFA------------------SRWL 177
Query: 170 KPGGHLVIKLLE 181
KP G L+IK+
Sbjct: 178 KPDGALLIKVFH 189
>gi|224070396|ref|XP_002195665.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Taeniopygia
guttata]
Length = 234
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + +++ Y RSAFKLL+I + ++++PG SVLD G APGAW QVA Q + L
Sbjct: 35 DPFVKASKQQHYRCRSAFKLLEIDDKLRVLRPGFSVLDCGAAPGAWSQVAVQRVNALGTD 94
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSN--QVRALSPKQKGFSVILSD 120
G V+G+D+ ++ + V D+ PS +++L P K VILSD
Sbjct: 95 AAVPTGFVLGVDLLRIS----PLEGAVFLSETDMAE-PSTLRAIQSLLPLGKA-DVILSD 148
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+ +GI D + L + +D++ +LKP G ++ K
Sbjct: 149 MAPNATGIKELDHQKLISLCLGLLDMS------------------QSILKPKGTMLCKFW 190
Query: 181 ESQDAQ 186
+ +A+
Sbjct: 191 DGSEAR 196
>gi|391327414|ref|XP_003738195.1| PREDICTED: putative ribosomal RNA methyltransferase CG11447-like
[Metaseiulus occidentalis]
Length = 251
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 42/188 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++++ Y ARSAFKLL++ ++Y L++PG +V+D G APG+W QV L P N
Sbjct: 48 DPYVKKSRYHNYRARSAFKLLEMDEKYNLLRPGMTVIDCGAAPGSWTQV----LVPKVNA 103
Query: 68 ---------GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS-- 115
G V+ IDV + VP +C V + D + R L G+S
Sbjct: 104 DRRCEDHPVGKVISIDVVPFEPVPHANCYGEVDFLDDDSVK------RVLEDLGAGWSLS 157
Query: 116 --VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173
+++SDM P+ SG+ D L A+ AL LKPGG
Sbjct: 158 CDLVVSDMAPNASGVAAIDHEKITVLSYAALVFAL------------------KTLKPGG 199
Query: 174 HLVIKLLE 181
+ KL
Sbjct: 200 GFICKLWH 207
>gi|418294693|ref|ZP_12906577.1| cell division protein FtsJ [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379066060|gb|EHY78803.1| cell division protein FtsJ [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 207
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ G +RS++KL+++ ++ KLI+PG V+DLG APG W QVA + +G
Sbjct: 17 DPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGWSQVAGKLVG---EK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G V+ D+ + V + D V ++++ L NQ +I+SD+
Sbjct: 74 GRVLATDILPMGGLDNVDFVQGDFTDDAVFQEILDRLDGNQP----------DLIVSDIA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D A S+ L +D+ VLKPGG+ V+K+ +
Sbjct: 124 PNLSGVAVADQASSMYLVELTLDMV------------------RKVLKPGGNYVVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|422637918|ref|ZP_16701350.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae Cit
7]
gi|330950314|gb|EGH50574.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Pseudomonas syringae Cit
7]
Length = 216
Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY +R+++KLL+IQ++ KLI+PG +V+DLG A G W QV + +G
Sbjct: 17 DKYVKMAQKDGYRSRASYKLLEIQEKDKLIRPGMTVIDLGAARGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D + ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAILEQILEAVGNTQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG++ D ++ L A+DLA VL+PGG +IK+ +
Sbjct: 124 PNMSGLSAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLIKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>gi|254427497|ref|ZP_05041204.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
DG881]
gi|196193666|gb|EDX88625.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
DG881]
Length = 208
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 34/175 (19%)
Query: 13 EAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVG 72
+AQ GY +R++FKLL++ ++ +L +PG +VLDLG APG W QVA Q +G G+V+
Sbjct: 25 KAQEQGYRSRASFKLLEMHEKDRLFRPGMTVLDLGAAPGGWSQVAGQLIG---GKGTVIA 81
Query: 73 IDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGI 128
D+ + V + D R + ++ S + +++SDM P++SG
Sbjct: 82 SDILAMDALPDVTFIEGDFREDAIYEQILA---------SLGDRRADLVMSDMAPNMSGN 132
Query: 129 TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ D ++ L A+D+A VL+P G ++K+ + +
Sbjct: 133 SAVDQPRAMYLAELALDMA------------------ERVLEPDGLFLVKVFQGE 169
>gi|124486074|ref|YP_001030690.1| hypothetical protein Mlab_1254 [Methanocorpusculum labreanum Z]
gi|158512817|sp|A2SSW7.1|RLME_METLZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|124363615|gb|ABN07423.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methanocorpusculum
labreanum Z]
Length = 203
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 34/186 (18%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
M D YR+A R GY ARSA+KL+ I +++ +I+ +V+DLG APG+WLQV ++
Sbjct: 1 MGSQWTKDNVYRKAMRDGYRARSAYKLIDINERFNVIRQTDNVVDLGAAPGSWLQV-LKT 59
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVIL 118
+ G + G+D+ + +P + V T++ D + P+ Q +R P +V++
Sbjct: 60 MTE----GQLCGVDLNPI-IPLEN----VITITGDFTD-PAIQAKIREAMPL---VNVVV 106
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
D P +SG D A + L A++ A S +LK GG+LV+K
Sbjct: 107 CDASPHLSGAKAYDQARVMGLNEEALNFA------------------SNLLKQGGNLVMK 148
Query: 179 LLESQD 184
+ D
Sbjct: 149 SFQGSD 154
>gi|58584834|ref|YP_198407.1| 23S rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|75497746|sp|Q5GS59.1|RLME_WOLTR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|58419150|gb|AAW71165.1| 23S rRNA methylase [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 216
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 32/176 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++ + Y +RSA+KL++I ++KL++ G ++DLG +PG W QVA Q G
Sbjct: 28 DQYVQKTNKDSYRSRSAYKLIEIDNKFKLLQAGQKIVDLGASPGGWSQVASQK------G 81
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
VV ID+K V S V+ + D+ L + + R K + F VILSDM P G
Sbjct: 82 VKVVAIDIKPVNTIS-----GVKYIQYDINELETLRERF---KDQKFDVILSDMAPESCG 133
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ + D + L A++ A L GG V+K+ + +
Sbjct: 134 LKSLDHIRIMLLCEAALNFA------------------KHFLNYGGKFVVKIFQGE 171
>gi|407927769|gb|EKG20655.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Macrophomina phaseolina
MS6]
Length = 831
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY AR+AFKL+Q+ K+Y ++ ++DL APG+W QVA + +
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVAAEVMP 67
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P +VG+D+ +K +P R T +D+ K +L D
Sbjct: 68 P---NSLIVGVDLSPIKPIP------RCITFQSDITTDKCRATLRQHLKTLKADAVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L+ GG V K+
Sbjct: 119 APNVGTAWVQDAFTQAELTLQSMKLA------------------TEFLREGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|345568491|gb|EGX51385.1| hypothetical protein AOL_s00054g455 [Arthrobotrys oligospora ATCC
24927]
Length = 853
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ Y ARSAFKL+Q+ ++Y ++ ++DL APG WLQVA ++
Sbjct: 8 GKGRLDKWYKLAKEKNYRARSAFKLIQLNQKYGFLQKSRVLIDLCAAPGGWLQVAAEN-- 65
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ N +VG+D+ +K +P +V T +D+ K +L D
Sbjct: 66 -MPNSSLIVGVDLSPIKPIP------KVITFVSDITTDKCRSTLRQHLKTWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 119 APNVGTAWVQDAFTQAELALQSLKLA------------------TEFLAEGGTFVTKIFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|144900076|emb|CAM76940.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Magnetospirillum
gryphiswaldense MSR-1]
Length = 238
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 49/68 (72%), Gaps = 3/68 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EA++LGY +R+AFKL+++ ++ L+KPG V+DLG APG W QVA Q +G
Sbjct: 45 DPYVQEARKLGYRSRAAFKLIELDDRFHLLKPGLRVVDLGAAPGGWTQVAVQRVGAR--- 101
Query: 68 GSVVGIDV 75
G VVG+D+
Sbjct: 102 GKVVGMDI 109
>gi|399115867|emb|CCG18671.1| RNA large subunit methyltransferase E [Taylorella equigenitalis
14/56]
Length = 210
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+AFKL++I KL+ G ++DLG +PG+W QVA + L L NG
Sbjct: 17 DPYVKLAQQKGYRARAAFKLIEILDVEKLMHRGDIIVDLGSSPGSWSQVARERL--LKNG 74
Query: 68 ---GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS---VILSDM 121
G ++ +D+ +P H + V+ + D + ++AL K GF +++SDM
Sbjct: 75 VIDGRIIALDL----LPMEHIEG-VEFIQGDFRD--ETILKALEEKV-GFQQVDLVISDM 126
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
P++SGI++ D+A + AV+ A + LKP G L++K
Sbjct: 127 APNLSGISSADSARIQHVVELAVEFA------------------TNHLKPQGALIVK 165
>gi|197287223|ref|YP_002153095.1| 23S rRNA methyltransferase J [Proteus mirabilis HI4320]
gi|227357082|ref|ZP_03841452.1| ribosomal RNA large subunit methyltransferase J (cell division
protein FtsJ) [Proteus mirabilis ATCC 29906]
gi|425070193|ref|ZP_18473307.1| ribosomal RNA large subunit methyltransferase E [Proteus mirabilis
WGLW6]
gi|425074017|ref|ZP_18477122.1| ribosomal RNA large subunit methyltransferase E [Proteus mirabilis
WGLW4]
gi|226705299|sp|B4F2B2.1|RLME_PROMH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|194684710|emb|CAR46685.1| ribosomal RNA large subunit methyltransferase J (cell division
protein FtsJ) [Proteus mirabilis HI4320]
gi|227162774|gb|EEI47737.1| ribosomal RNA large subunit methyltransferase J (cell division
protein FtsJ) [Proteus mirabilis ATCC 29906]
gi|404594428|gb|EKA95010.1| ribosomal RNA large subunit methyltransferase E [Proteus mirabilis
WGLW4]
gi|404595709|gb|EKA96245.1| ribosomal RNA large subunit methyltransferase E [Proteus mirabilis
WGLW6]
Length = 209
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A++ G+ +R+ FKL +IQ+ + KPG +V+DLG APG W Q Q LG N
Sbjct: 20 DKYVQQAKKKGFRSRAWFKLEEIQQSDNIFKPGMTVVDLGAAPGGWSQYVVQQLG---NK 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G ++ D+ V V L D R + V +++ + N+V+ V++SDM
Sbjct: 77 GRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGDNKVQ----------VVMSDMA 126
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D S+ L V+LAL D D VL PGG ++K+ +
Sbjct: 127 PNMSGTPAVDIPRSMYL----VELAL------------DMCRD--VLAPGGSFIVKVFQG 168
Query: 183 Q 183
+
Sbjct: 169 E 169
>gi|347759014|ref|YP_004866576.1| ftsJ-like methyltransferase family protein [Micavibrio
aeruginosavorus ARL-13]
gi|347591532|gb|AEP10574.1| ftsJ-like methyltransferase family protein [Micavibrio
aeruginosavorus ARL-13]
Length = 210
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 34/176 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EAQ+ G+ +R+AFKL+++ +Q LI+PG +++DLG APG W QVA G
Sbjct: 22 DPYVLEAQKAGFRSRAAFKLIEMDEQLHLIRPGMNIIDLGAAPGGWSQVAAA------KG 75
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSV 125
VVG+D+ + +P + + D +N + AL G +++SDM P+
Sbjct: 76 AHVVGLDLLPIDPLPG------IAFLQMDFMN--DDAPEALITTLDGPADLVMSDMAPNT 127
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G + D + L A D AL VL+PGG V K+ +
Sbjct: 128 TGHQSTDHIRIMGLVEAAYDFAL------------------EVLRPGGSFVAKVFQ 165
>gi|327297282|ref|XP_003233335.1| rRNA methyltransferase [Trichophyton rubrum CBS 118892]
gi|326464641|gb|EGD90094.1| rRNA methyltransferase [Trichophyton rubrum CBS 118892]
Length = 834
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +
Sbjct: 30 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEC-- 87
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ + +VG+D+ +K +P +V T +D+ K +L D
Sbjct: 88 -MPSQSLIVGVDLSPIKPIP------KVITFQSDITTDKCRATIRQHFKTWKADTVLHDG 140
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L PGG V K+
Sbjct: 141 APNVGTAWVQDAFSQAELVLQSLKLA------------------TEFLVPGGSFVTKVFR 182
Query: 182 SQD 184
S+D
Sbjct: 183 SKD 185
>gi|296809876|ref|XP_002845276.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma otae CBS
113480]
gi|238842664|gb|EEQ32326.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma otae CBS
113480]
Length = 804
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEC-- 65
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ + +VG+D+ +K +P +V T +D+ K +L D
Sbjct: 66 -MPSQSLIVGVDLSPIKAIP------KVITFQSDITTDKCRATIRQHFKTWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L PGG V K+
Sbjct: 119 APNVGTAWVQDAFSQAELVLQSLKLA------------------TEFLIPGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|387827228|ref|YP_005806510.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi N40]
gi|312149324|gb|ADQ29395.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi N40]
Length = 189
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 13/142 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A+R GY+ARS +KL++I +++ L G +VLD+G +PG++ Q A + L
Sbjct: 3 DEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYKKLKR---- 57
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G +V +D+ + L D + D+ + + ++ P +S+++SD+ P +
Sbjct: 58 GILVSVDINDI---GLRYDDNFYFIKGDIFSDDTVFKINTFKP----YSLVISDVAPKTT 110
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D + S L MR +DL+L
Sbjct: 111 GNRLVDTSNSFNLSMRIIDLSL 132
>gi|389584507|dbj|GAB67239.1| FtsJ-like methyltransferase [Plasmodium cynomolgi strain B]
Length = 1010
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y+ A+ GY ARSAFKL+QI ++Y + K + ++DL APG WLQVA ++ +
Sbjct: 13 DKYYKLAKSAGYRARSAFKLIQIAQKYNIFKDANILIDLCAAPGGWLQVAYKN---MKRS 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
+++G+D+ VP D V T+ D+ Q++ + +K VIL+D P+V
Sbjct: 70 STIIGVDL----VPIRKIDNNVITLKCDITTSACIKQIKNIIKNEKA-DVILNDGAPNVG 124
Query: 127 GITTKDA 133
+ D+
Sbjct: 125 TTYSYDS 131
>gi|221057686|ref|XP_002261351.1| methyltransferase [Plasmodium knowlesi strain H]
gi|194247356|emb|CAQ40756.1| methyltransferase, putative [Plasmodium knowlesi strain H]
Length = 1009
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y+ A+ GY ARSAFKL+QI ++Y + K + ++DL APG WLQVA ++ +
Sbjct: 13 DKYYKLAKSAGYRARSAFKLIQIAQKYNIFKDANILIDLCAAPGGWLQVAYKN---MKRS 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
+++G+D+ VP D V T+ D+ Q++ + +K VIL+D P+V
Sbjct: 70 STIIGVDL----VPIRKIDNNVITLKCDITTSACVKQIKNIIKNEKA-DVILNDGAPNVG 124
Query: 127 GITTKDA 133
+ D+
Sbjct: 125 TTYSYDS 131
>gi|392571269|gb|EIW64441.1| FtsJ-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 997
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYSFLESARCCIDLCAAPGGWLQVASKY- 66
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILS 119
+ +VG+D+ ++ +P RV T ++D+ NQ+R K V+L
Sbjct: 67 --MPTNSVIVGVDLVPIRAIP------RVVTFASDITTQQCRNQLRNELKDWKA-DVVLH 117
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLA 147
D P+V +DA EL + ++ LA
Sbjct: 118 DGAPNVGTAWVQDAYSQSELVLMSMKLA 145
>gi|350630529|gb|EHA18901.1| hypothetical protein ASPNIDRAFT_120052 [Aspergillus niger ATCC
1015]
Length = 794
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ VLDL APG+W QVA + +
Sbjct: 2 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAAECM- 60
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P + +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 61 PAQS--IIVGVDLAPIKPIP------RVITFQSDITTEKCRTTIRQHLKHWKADTVLHDG 112
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 113 APNVGTAWVQDAFSQAELVLQSLKLA------------------TEFLAEGGTFVTKVFR 154
Query: 182 SQD 184
S+D
Sbjct: 155 SKD 157
>gi|145254616|ref|XP_001398682.1| AdoMet-dependent rRNA methyltransferase spb1 [Aspergillus niger CBS
513.88]
gi|134084264|emb|CAK47295.1| unnamed protein product [Aspergillus niger]
Length = 801
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ VLDL APG+W QVA + +
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAAECM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P + +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 67 PAQS--IIVGVDLAPIKPIP------RVITFQSDITTEKCRTTIRQHLKHWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 119 APNVGTAWVQDAFSQAELVLQSLKLA------------------TEFLAEGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|350562020|ref|ZP_08930857.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349780338|gb|EGZ34673.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 208
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F AQ+ GY +R+ FKL +I ++ +L+ G V+DLG APG W Q A +GP
Sbjct: 18 DRFVARAQQQGYRSRAVFKLEEIDRRDRLLHRGLRVVDLGAAPGGWSQYAADRVGPT--- 74
Query: 68 GSVVGIDVKKVK-VPSLHC---DARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V D+ + +P + D R V ++ ++ L +LSDM P
Sbjct: 75 GRIVASDILPMDPIPGVSIVTGDFRENAVLERILEALGDEPADL---------VLSDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D ++ L A+DLAL VLKP G ++KL + Q
Sbjct: 126 NLSGTDAVDQPRAIHLCELALDLAL------------------RVLKPNGDFLVKLFQGQ 167
>gi|296136184|ref|YP_003643426.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomonas intermedia
K12]
gi|295796306|gb|ADG31096.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Thiomonas intermedia
K12]
Length = 216
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 18/147 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQR GY AR+A+KL +I + L++PG V+DLG PG+W Q A L + G
Sbjct: 20 DPYVKMAQREGYRARAAYKLKEIDEAEGLLRPGQIVVDLGSTPGSWSQYARNRL--MRGG 77
Query: 68 ---GSVVGIDVKKVK-VPSLHC---DARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
G+++ +D+ ++ VP + D R + V NQ+ AL +K V+LSD
Sbjct: 78 AVQGTILALDLLPMEPVPDVRFLLGDFREEAV--------VNQLEALLEGRK-VDVVLSD 128
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLA 147
M P+++GI + DAA L A+D A
Sbjct: 129 MAPNLTGIPSADAARIEHLSELALDFA 155
>gi|169844171|ref|XP_001828807.1| RNA methyltransferase [Coprinopsis cinerea okayama7#130]
gi|116510178|gb|EAU93073.1| RNA methyltransferase [Coprinopsis cinerea okayama7#130]
Length = 882
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + + P
Sbjct: 14 DKYYKLAKEQGYRARSAFKLIQLNKKYGFLESARCTIDLCAAPGGWLQVASKYMPP---N 70
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
++G+D+ +K +P RV T ++D+ K V+L D P+V
Sbjct: 71 SLIIGVDLVPIKPIP------RVITFASDITTTQCRNYLRGEMKDWKADVVLHDGAPNVG 124
Query: 127 GITTKDAALSVELGMRAVDLAL 148
+DA EL + ++ LA+
Sbjct: 125 TAWVQDAYSQSELVLMSLKLAV 146
>gi|347969042|ref|XP_311882.5| AGAP003002-PA [Anopheles gambiae str. PEST]
gi|333467724|gb|EAA07890.5| AGAP003002-PA [Anopheles gambiae str. PEST]
Length = 917
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 28/178 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY+ A+ GY +R+AFKL+Q+ +++ ++ LDL APG W+QVA Q++ P+ +
Sbjct: 13 DKFYKLAKESGYRSRAAFKLIQLNRRFGFLQQSQVCLDLCAAPGGWMQVAKQNM-PVSS- 70
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
V+G+D+ +K VP C + + +++D ++ + L K V+L+D P+V
Sbjct: 71 -IVIGVDLYPIKNVPG--CISLIGDITSD--KTKADLAKEL--KTWKVDVVLNDGAPNVG 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
DA V L + AV LA + L+PGG + K+ S+D
Sbjct: 124 KNWLHDAYQQVCLTLSAVKLA------------------TQFLRPGGWFITKVFRSKD 163
>gi|335044221|ref|ZP_08537246.1| 23S rRNA methylase [Methylophaga aminisulfidivorans MP]
gi|333787467|gb|EGL53351.1| 23S rRNA methylase [Methylophaga aminisulfidivorans MP]
Length = 205
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 16/145 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G+ +R+ FKL +I + KLI+PG SV+DLG APG W A +G +
Sbjct: 17 DQYVKQAQKEGHRSRATFKLKEIDDKDKLIRPGMSVVDLGSAPGGWSDYALAKVG---DS 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ +D+ ++ V + D R V D +N + L +Q ++LSDM P
Sbjct: 74 GKVIALDILEMTPLTGVHFIQGDFREDDV-LDELN------KVLDGRQ--IDLVLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLAL 148
+++G+ + D S+ L A+D AL
Sbjct: 125 NMTGVGSIDQPSSMYLVELALDFAL 149
>gi|358366633|dbj|GAA83253.1| rRNA methyltransferase Spb1 [Aspergillus kawachii IFO 4308]
Length = 796
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ VLDL APG+W QVA + +
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAAECM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P + +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 67 PAQS--IIVGVDLAPIKPIP------RVITFQSDITTEKCRTTIRQHLKHWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 119 APNVGTAWVQDAFSQAELVLQSLKLA------------------TEFLAEGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|88797615|ref|ZP_01113204.1| cell division protein FtsJ [Reinekea blandensis MED297]
gi|88779787|gb|EAR10973.1| cell division protein FtsJ [Reinekea sp. MED297]
Length = 206
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 30/176 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F +A++ GY +R+++KLL++ ++ +LI+PG V+DLG APG W QVA + +G +
Sbjct: 17 DPFVHKAKQDGYRSRASYKLLELCEKDRLIRPGMMVVDLGSAPGGWSQVAARMVG---DQ 73
Query: 68 GSVVGIDVKKVKVPSLHCDA--RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV D+ L DA V+ + D + Q + +++SDM P++
Sbjct: 74 GRVVASDI-------LEMDAVPDVEFIQGDFTDEAVYQALLDCIGDRPVDLVISDMAPNM 126
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
SG +A + M V+LAL A +L+PGG V KL
Sbjct: 127 SG----NAVIDQPAAMYLVELALDMA--------------QSILRPGGAFVAKLFH 164
>gi|414173080|ref|ZP_11427843.1| ribosomal RNA large subunit methyltransferase E [Afipia broomeae
ATCC 49717]
gi|410891732|gb|EKS39528.1| ribosomal RNA large subunit methyltransferase E [Afipia broomeae
ATCC 49717]
Length = 232
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 24/170 (14%)
Query: 13 EAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVG 72
+A+R G+ +R+A+KL +I + + +K G V+DLG APG W Q+A + +G ++ G V+
Sbjct: 38 QAKRDGFRSRAAYKLREIDDKQRFLKQGQVVVDLGAAPGGWSQIAAKRVGAMEGRGKVIA 97
Query: 73 IDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKD 132
ID+ +++P L A Q D + ++RA+ G V++SDM + +G D
Sbjct: 98 IDL--LEMPELPGVAFAQMDFLD--DRAPEKLRAMIG--GGADVVMSDMAANTTGHRKTD 151
Query: 133 AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+R + L AA A +L PGG + K+ +S
Sbjct: 152 Q-------LRIIGLVENAAAFACE-----------ILNPGGTFLAKVFQS 183
>gi|414071575|ref|ZP_11407541.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. Bsw20308]
gi|410806015|gb|EKS12015.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. Bsw20308]
Length = 209
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL ++Q + K+++PG +V+DLG APG+W Q + +G +
Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEVQNRDKILRPGMTVVDLGAAPGSWSQYLAEKVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V+N ++ K V+ SDM P
Sbjct: 77 GQVIACDILPMDSLAGVDFLQGDFREEA----VLNALLKRIDG-----KNVDVVFSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D A S+ L A+D+ S VLK G ++K+ + +
Sbjct: 128 NMSGNNSVDQAGSMYLVELALDMC------------------SQVLKKNGAFIVKVFQGE 169
>gi|164656501|ref|XP_001729378.1| hypothetical protein MGL_3413 [Malassezia globosa CBS 7966]
gi|159103269|gb|EDP42164.1| hypothetical protein MGL_3413 [Malassezia globosa CBS 7966]
Length = 902
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 28/184 (15%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D FY A+ GY +R+AFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 AGKGRLDKFYWLAKEQGYRSRAAFKLVQLNKKYNFLENAHCCIDLCAAPGGWLQVASKHM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
P ++G+D+ +K +P R T + D+ + + K V+L D
Sbjct: 68 PP---NSLILGVDLVAIKPIP------RCITFAEDINSYRCREQLQEHMKDWKADVVLHD 118
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
P+V +DA EL ++++ LA+ L PGG V K+
Sbjct: 119 GAPNVGTAWVQDAYAQNELTLQSLRLAV------------------EFLVPGGTFVTKVF 160
Query: 181 ESQD 184
S+D
Sbjct: 161 RSKD 164
>gi|443716141|gb|ELU07817.1| hypothetical protein CAPTEDRAFT_103272 [Capitella teleta]
Length = 317
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 26/182 (14%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D FY A+ GY +R+AFKLLQ+ ++++ ++ +DL APG WLQVA Q +
Sbjct: 8 GKARKDKFYHLAKETGYRSRAAFKLLQLNRKFEFLEKARVCIDLCAAPGGWLQVAAQQM- 66
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
P+ +VG+D+ +K +H V + D+ Q + V+L D
Sbjct: 67 PV--SSVIVGVDLFSIK--PIH---NVVSFQEDITTEKCRQTLRKELQTWKADVVLHDGA 119
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+V DA +L ++A+ LA+ L+ GG V K+ S
Sbjct: 120 PNVGQNWLHDAFQQAQLTLQALRLAV------------------EFLRKGGWFVTKIFRS 161
Query: 183 QD 184
+D
Sbjct: 162 KD 163
>gi|254502176|ref|ZP_05114327.1| ribosomal RNA large subunit methyltransferase J [Labrenzia
alexandrii DFL-11]
gi|222438247|gb|EEE44926.1| ribosomal RNA large subunit methyltransferase J [Labrenzia
alexandrii DFL-11]
Length = 236
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A+ GY +R+A+KL++I ++KL+KPG V+DLGCAPG W Q+A + +
Sbjct: 38 DPYVRRAKIDGYRSRAAYKLIEIDDKHKLLKPGYRVVDLGCAPGGWCQIAVDRVKSTIDS 97
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPSV 125
VVGID + H V + D + + P+ + AL + V+LSDM
Sbjct: 98 PKVVGIDYLDMD----HVRGAV-FLKKDFLDDDAPAALMEALGGHKP--DVVLSDMAAPT 150
Query: 126 SGITTKDAALSVELGMRAVDLA 147
+G D + L A+D A
Sbjct: 151 TGHKQTDHLRTTHLFEIAIDFA 172
>gi|115528317|gb|AAI24923.1| LOC431876 protein [Xenopus laevis]
Length = 762
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 28/185 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D FY A+ GY +RSAFKL+Q+ ++++ ++ +++DL APG WLQVA + +
Sbjct: 8 GKSRKDKFYHLAKETGYRSRSAFKLIQLNRKFQFLQRARALVDLCAAPGGWLQVAAKFM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ + ++GID+ +K +P+ V T+ D+ Q + V+L+D
Sbjct: 67 PVSS--LIIGIDLVPIKPIPN------VLTLQEDITTEDCRQAVKKHLQTWKADVVLNDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V T DA V L + A+ LA L GG + K+
Sbjct: 119 APNVGANWTHDAFSQVHLSLMALRLA------------------CDCLSRGGWFITKIFR 160
Query: 182 SQDAQ 186
S D Q
Sbjct: 161 SSDYQ 165
>gi|294891100|ref|XP_002773420.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
50983]
gi|239878573|gb|EER05236.1| ribosomal RNA methyltransferase, putative [Perkinsus marinus ATCC
50983]
Length = 419
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 34/181 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY+ A+ GY RSAFKL+Q++K+Y +K S +DL APG W QVA + + P ++
Sbjct: 13 DRFYQLAKEQGYRGRSAFKLIQLEKKYGFLKNARSCVDLCGAPGGWSQVAAKHM-PANS- 70
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
V+ +D+ +K V ++ CD Q ++ + +P V+L+D P
Sbjct: 71 -KVICVDLMPIKPIKGVVTMQCDITTQKCRQFLLKELNG-----TP----CDVVLNDGAP 120
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+V KDA EL + AV LA + +L+ GG V K+ S
Sbjct: 121 NVGASWAKDAYNQAELCLYAVHLA------------------ADMLRKGGTFVTKVFRSS 162
Query: 184 D 184
D
Sbjct: 163 D 163
>gi|392512772|emb|CAD25667.2| rRNA METHYL-TRANSFERASE [Encephalitozoon cuniculi GB-M1]
Length = 550
Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 26/183 (14%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G D +Y A+ GY ARSAFKLLQ+ ++Y ++ ++DL APG+W QVA Q +
Sbjct: 7 TGKTRLDKYYSLAKEKGYRARSAFKLLQMNRKYGFLEDAHVLIDLCAAPGSWSQVAAQEM 66
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
PL +V ID++ +K D V+ ++ D L ++R + K V+L D
Sbjct: 67 -PLRR--KIVAIDLEPIKFIG-DVDTIVEDITTDECRL---KLREILGTHKA-DVVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V G + ++ A + L L L A LA+ L+ GG V K+
Sbjct: 119 APNV-GTSWENDAFNQNL------LVLHSARLAAE-----------FLRKGGVFVTKVFR 160
Query: 182 SQD 184
SQD
Sbjct: 161 SQD 163
>gi|71400687|ref|XP_803129.1| FtsJ cell division protein [Trypanosoma cruzi strain CL Brener]
gi|70865797|gb|EAN81683.1| FtsJ cell division protein, putative [Trypanosoma cruzi]
Length = 651
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKL+Q+ ++Y + ++DL APG W QVA + + P+ G
Sbjct: 14 DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAKHM-PV--G 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VG+D+ V + + V+T D+ + + ++ K++ ++ D P+V G
Sbjct: 71 SKIVGVDL--VPIAPIR---GVKTFVGDITDDKTRKMIVTYFKKEPVDCVIHDGAPNVGG 125
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++D L + A +A + +LKP G V K+ SQD
Sbjct: 126 VWSRDLFEQNALVLHAAKMA------------------ASMLKPSGWFVTKVFRSQD 164
>gi|407393473|gb|EKF26619.1| FtsJ cell division protein, putative [Trypanosoma cruzi
marinkellei]
Length = 911
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKL+Q+ ++Y + ++DL APG W QVA + + P+ G
Sbjct: 14 DAYYRLAKDQGFRARSAFKLIQLNRKYDFLAKSRVLVDLCAAPGGWCQVAAKHM-PV--G 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VG+D+ V + + V+T D+ + + ++ K++ ++ D P+V G
Sbjct: 71 SKIVGVDL--VPIAPIR---GVKTFVGDITDDKTRKMIVTYLKKEPVDCVIHDGAPNVGG 125
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++D L + A +A + +LKP G V K+ SQD
Sbjct: 126 VWSRDLFEQNALVLHAAKMA------------------ASMLKPSGWFVTKVFRSQD 164
>gi|157423575|gb|AAI53565.1| FtsJ homolog 1 (E. coli) [Danio rerio]
Length = 323
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 27/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ +++KL K S +DL APG+W QV + L D
Sbjct: 10 DIYYRLAKEEGWRARSAFKLLQLDEEFKLFKGVSRAVDLCAAPGSWSQVLSRKLRGKDKS 69
Query: 68 GSV--VGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
V V +D++ + +P V + D+ + + + + + +++ D P
Sbjct: 70 EEVKIVAVDLQAMAPLPG------VTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPD 123
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
V+G+ D + +L + A+++ + VLKPGG+ V K+ +D
Sbjct: 124 VTGLHDVDEYIQAQLLLAALNIT------------------THVLKPGGNFVAKIFRGKD 165
>gi|290996969|ref|XP_002681054.1| predicted protein [Naegleria gruberi]
gi|284094677|gb|EFC48310.1| predicted protein [Naegleria gruberi]
Length = 239
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 27/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQY-KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
D F ++A+ GY +R+AFKLL+I +++ K ++ ++DLG APG+W QVA + + +
Sbjct: 43 DTFVKQAKAQGYRSRAAFKLLEIDEKWGKFLEKSKVIIDLGAAPGSWSQVAAEK---MKS 99
Query: 67 GGSVVGIDV---KKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
GG ++ ID+ + +K P +Q ++P Q+R+ + + +LSDM P
Sbjct: 100 GGKLITIDILDMEPLKSPPNKNLQIIQLKGKFEDSIP--QLRSYLNEGEFADCLLSDMAP 157
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
+ SG+ + D + L ++D A VLKPGG +++K+
Sbjct: 158 NTSGVKSLDHNRIIFLCNTSIDFAF------------------EVLKPGGCMLMKIF 196
>gi|19113236|ref|NP_596444.1| mitochondrial 2' O-ribose methyltransferase Mrm2 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|9911005|sp|P78860.2|YBOF_SCHPO RecName: Full=Putative ribosomal RNA methyltransferase C2G2.15c;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|2956782|emb|CAA17895.1| mitochondrial 2' O-ribose methyltransferase Mrm2 (predicted)
[Schizosaccharomyces pombe]
Length = 218
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 18/154 (11%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
+ DF+ ++++ + +R+A+KL+++ +Y+ I V+D+G APG+W QVA + +G
Sbjct: 15 SKDFYRKKSKIDNFRSRAAYKLIELNSKYRFINKEDVVIDVGFAPGSWSQVAKKLVG--- 71
Query: 66 NGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQKGFSV----- 116
N G V+GID++ + P ++ D R + + +R L S+
Sbjct: 72 NKGKVIGIDIQHIAPPEGVLPIYGDIR----DPNTLTKLFEALRLLHEPNTNDSIDCRVV 127
Query: 117 --ILSDMCPSVSGITTKDAALSVELGMRAVDLAL 148
++SDM +GI +D ALS+EL A+ +AL
Sbjct: 128 DAVISDMLHKATGIRIRDHALSMELCASALHVAL 161
>gi|392597296|gb|EIW86618.1| FtsJ-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 852
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 12/149 (8%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ ++Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNRKYSFLESARCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILS 119
P ++ +VG+D+ ++ +P RV T ++D+ NQ+R K V+L
Sbjct: 68 -PANS--IIVGVDLVPIRPIP------RVVTFASDITTTQCRNQLRGELKDWKA-DVVLH 117
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLAL 148
D P+V +DA EL + ++ LA+
Sbjct: 118 DGAPNVGTAWVQDAYSQSELVLMSLKLAV 146
>gi|216264466|ref|ZP_03436458.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 156a]
gi|221217749|ref|ZP_03589217.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 72a]
gi|215980939|gb|EEC21746.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 156a]
gi|221192426|gb|EEE18645.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 72a]
Length = 192
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 13/142 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A+R GY+ARS +KL++I +++ L G +VLD+G +PG++ Q A + L
Sbjct: 6 DEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYKKLKR---- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G +V +D+ + L D + D+ + + ++ P +S+++SD+ P +
Sbjct: 61 GILVSVDINDI---GLRYDDNFYFIKGDIFSDDTVFKINTFKP----YSLVISDVAPKTT 113
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D + S L MR +DL+L
Sbjct: 114 GNRLVDTSNSFNLSMRIIDLSL 135
>gi|209694183|ref|YP_002262111.1| 23S rRNA methyltransferase J [Aliivibrio salmonicida LFI1238]
gi|226703281|sp|B6END5.1|RLME_ALISL RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|208008134|emb|CAQ78276.1| ribosomal RNA large subunit methyltransferase J (cell division
protein FtsJ) [Aliivibrio salmonicida LFI1238]
Length = 209
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 36/184 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + EAQ+ GY +R+ FKL +IQ + KL+KPG +V+DLG APG W Q A + +G +
Sbjct: 20 DKYVLEAQKRGYRSRAIFKLEEIQNKDKLLKPGMTVVDLGAAPGGWSQYAVEQVG---DS 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++ + P V++SDM P
Sbjct: 77 GQVIACDILAMDSIAGVSFLQGDFREEAVLDALLE-------RIQPDM--VDVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL--E 181
++SG + D S+ L A+D+ VL P G +K+ E
Sbjct: 128 NMSGNPSVDQPRSMYLVELALDMC------------------RQVLAPNGSFTVKVFQGE 169
Query: 182 SQDA 185
S DA
Sbjct: 170 SFDA 173
>gi|329297291|ref|ZP_08254627.1| 23S rRNA methyltransferase J [Plautia stali symbiont]
Length = 209
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G +R+ FKL +IQ+ KL KPG +V+DLG APG W Q Q +G +G
Sbjct: 20 DKYVQQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPGGWSQYVVQQIG---SG 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V L D R + V ++ +Q V++SDM P
Sbjct: 77 GRIIACDLLPIDPIGGVDFLQGDFRDEAVLKALLERVGDQ---------KVQVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D S+ L V+LAL VL PGG V+K+ +
Sbjct: 128 NMSGTPAVDIPRSMYL----VELAL--------------EMCRDVLAPGGSFVVKVFQ 167
>gi|238650351|ref|YP_002916203.1| cell division protein ftsJ [Rickettsia peacockii str. Rustic]
gi|259494570|sp|C4K0Q4.1|RLME_RICPU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|238624449|gb|ACR47155.1| cell division protein ftsJ [Rickettsia peacockii str. Rustic]
Length = 227
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 30/167 (17%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN--GGSVVGIDV 75
G+ +R+A+KLL+I +++KL P ++DLG APG W QVA + + DN ++ IDV
Sbjct: 45 GFRSRAAYKLLEIHEKFKLFIPNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDV 104
Query: 76 KKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCPSVSGITTKDA 133
+++ H A V+ V D + + ++AL + +++SDM + G D
Sbjct: 105 LEIE----HV-AGVEFVQKDFFEADTEELIIQALDGRA---DIVMSDMASNTIGHKATDH 156
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++ L +A + AL VLKP GH + K+
Sbjct: 157 IRTLLLCEQAFEFAL------------------KVLKPSGHFIAKIF 185
>gi|224809482|ref|NP_001007385.2| FtsJ homolog 1 [Danio rerio]
Length = 323
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 27/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ +++KL K S +DL APG+W QV + L D
Sbjct: 10 DIYYRLAKEEGWRARSAFKLLQLDEEFKLFKGVSRAVDLCAAPGSWSQVLSRKLRGKDKS 69
Query: 68 GSV--VGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
V V +D++ + +P V + D+ + + + + + +++ D P
Sbjct: 70 EEVKIVAVDLQAMAPLPG------VTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPD 123
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
V+G+ D + +L + A+++ + VLKPGG+ V K+ +D
Sbjct: 124 VTGLHDVDEYIQAQLLLAALNIT------------------THVLKPGGNFVAKIFRGKD 165
>gi|410665450|ref|YP_006917821.1| ribosomal RNA large subunit methyltransferase J [Simiduia
agarivorans SA1 = DSM 21679]
gi|409027807|gb|AFV00092.1| ribosomal RNA large subunit methyltransferase J [Simiduia
agarivorans SA1 = DSM 21679]
Length = 207
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 80/141 (56%), Gaps = 10/141 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ GY +R+++KLL++ ++ KL +P V+DLG APG W QVA + +G
Sbjct: 17 DPYVKRAQVDGYRSRASYKLLELNEKDKLFRPHQVVMDLGSAPGGWSQVAMKLVG---EH 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ D+ +P + A+V+ + D + +Q+ A + V++SDM P++S
Sbjct: 74 GRVIASDI----LP-MDAIAQVEFIQGDFTEDKVFDQIMA-TINSDAVDVVISDMAPNIS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
G+ D A S+ L A+D+A
Sbjct: 128 GVNAADQASSMYLVELALDMA 148
>gi|296080816|ref|NP_001171683.1| FtsJ RNA methyltransferase homolog 2 [Sus scrofa]
gi|197281890|gb|ACH57152.1| FtsJ-like protein 2 [Sus scrofa]
Length = 245
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 11/146 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + ++ Y RSAFKLL++ +++++++PG VLD G APGAW QVA Q +
Sbjct: 41 DPFVKASKVESYRCRSAFKLLEMNERHRILRPGLRVLDCGAAPGAWSQVAVQRVNAAGTD 100
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
G V+G+D+ + L + ADV + + Q +R L P K VILSDM
Sbjct: 101 ATAPVGFVLGVDLLHI----LPLEGATFLCPADVTDPRTFQRIRDLLPGGKA-DVILSDM 155
Query: 122 CPSVSGITTKDAALSVELGMRAVDLA 147
P+ +GI D + L + +D+A
Sbjct: 156 APNATGIRGLDHDRLISLCLSLLDMA 181
>gi|29029589|ref|NP_803183.1| putative ribosomal RNA methyltransferase 1 isoform b [Homo sapiens]
gi|29029591|ref|NP_803188.1| putative ribosomal RNA methyltransferase 1 isoform b [Homo sapiens]
gi|397471351|ref|XP_003807259.1| PREDICTED: putative ribosomal RNA methyltransferase 1 isoform 2
[Pan paniscus]
gi|3511153|gb|AAC33734.1| cell division protein [Homo sapiens]
gi|119571169|gb|EAW50784.1| FtsJ homolog 1 (E. coli), isoform CRA_b [Homo sapiens]
gi|410222316|gb|JAA08377.1| FtsJ homolog 1 [Pan troglodytes]
gi|410252888|gb|JAA14411.1| FtsJ homolog 1 [Pan troglodytes]
gi|410290772|gb|JAA23986.1| FtsJ homolog 1 [Pan troglodytes]
gi|410350183|gb|JAA41695.1| FtsJ homolog 1 [Pan troglodytes]
Length = 327
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ K+++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + K +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|404378205|ref|ZP_10983302.1| ribosomal RNA large subunit methyltransferase E [Simonsiella
muelleri ATCC 29453]
gi|404295153|gb|EFG31757.2| ribosomal RNA large subunit methyltransferase E [Simonsiella
muelleri ATCC 29453]
Length = 249
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 18/145 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KLL+I ++ K+IKP + + DLG APG+W QVA + +G
Sbjct: 61 DPYVQRAQKDGYRARAAYKLLEINEKDKIIKPNTVLADLGSAPGSWSQVAIKLVGK---Q 117
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTV-----SADVINLPSNQVRALSPKQKGFSVILSDMC 122
G V +D+ +P H D VQ + ADV+ Q +L + + +++ DM
Sbjct: 118 GKVFALDI----LPMEHIDG-VQFIQGDFREADVL----AQFESL-LENRPLDLVICDMA 167
Query: 123 PSVSGITTKDAALSVELGMRAVDLA 147
P++SG D A S L A+D +
Sbjct: 168 PNMSGNAVMDQARSYYLCELALDFS 192
>gi|291232361|ref|XP_002736125.1| PREDICTED: AGAP004177-PA-like [Saccoglossus kowalevskii]
Length = 239
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 68/132 (51%), Gaps = 19/132 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ Y ARSAFKL++I +Y +++PGS V+D G APGAW QV + + +
Sbjct: 45 DPYVKRAQMGNYRARSAFKLIEIDDKYAILRPGSVVIDCGAAPGAWTQVTVERINA-EGK 103
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI------NLPSNQVRALSPKQKGFS-VILSD 120
G V+ +D+K Q ++ VI L S Q QK + VI+SD
Sbjct: 104 GQVISVDLK-----------YFQPINGAVIIDQSDFTLESTQKLIFEQMQKNQADVIISD 152
Query: 121 MCPSVSGITTKD 132
M P+ SG+ D
Sbjct: 153 MAPNASGMHAMD 164
>gi|409083437|gb|EKM83794.1| hypothetical protein AGABI1DRAFT_117268 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 863
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 8 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYNFLEQARCCIDLCAAPGGWLQVASKYM 67
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P ++ +VG+D+ +K P H V T +AD+ + K V+L D
Sbjct: 68 -PTNS--VIVGVDLVPIK-PIPH----VVTFAADITTPHCRNLIQGELKDWKADVVLHDG 119
Query: 122 CPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 120 APNVGTAWIQDAYSQSELVLMSLKLAV 146
>gi|353327965|ref|ZP_08970292.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont wVitB of Nasonia vitripennis]
Length = 192
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++ + GY +RSA+KL++I ++KL++ G ++DLG PG W QVA + G
Sbjct: 3 DQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVASK------KG 56
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG--FSVILSDMCPSV 125
SV+ +D+K + S V+ + D+I +++ L K K F VILSDM P
Sbjct: 57 ASVIAVDIKPINAIS-----GVECIRCDII----SELEILREKFKDHKFDVILSDMAPES 107
Query: 126 SGITTKDAALSVELGMRAVDLA 147
G+ + D + L A++ A
Sbjct: 108 CGLKSLDHIRIMLLCEAALNFA 129
>gi|315056971|ref|XP_003177860.1| 21S rRNA (uridine(2791)-2'-O)-methyltransferase MRM2 [Arthroderma
gypseum CBS 118893]
gi|311339706|gb|EFQ98908.1| ribosomal RNA methyltransferase MRM2 [Arthroderma gypseum CBS
118893]
Length = 292
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 90/229 (39%), Gaps = 76/229 (33%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EA G +R+AFKLLQI +Y+L K G +V+DLG APG+W QVA P
Sbjct: 37 DTYTKEAGMQGLKSRAAFKLLQINDRYRLFKSGQTVVDLGYAPGSWSQVAFNLTKPR--- 93
Query: 68 GSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLP-----------SNQVRALSP 109
G VVG+D+ + P RVQ D + P S++ SP
Sbjct: 94 GRVVGVDIIPAQPPRGVSTIQGNFLSPRVQEYVKDFVRDPNRGRPRSQLPTSSEQEESSP 153
Query: 110 KQK-------GF------------------------------SVILSDMCPSVSGITTKD 132
K G+ V+LSDM + SG ++D
Sbjct: 154 FTKPDTETDGGYIDLERSSSAHINKEGDEVAQPPNKAKVGSVDVVLSDMLMNTSGTKSRD 213
Query: 133 AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
S+EL A+D A S VLK GGH V K +
Sbjct: 214 HLGSMELCKAALDFA------------------SNVLKQGGHFVCKYYQ 244
>gi|119504342|ref|ZP_01626422.1| ribosomal RNA methyltransferase RrmJ/FtsJ [marine gamma
proteobacterium HTCC2080]
gi|119459850|gb|EAW40945.1| ribosomal RNA methyltransferase RrmJ/FtsJ [marine gamma
proteobacterium HTCC2080]
Length = 208
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + A + GY +R+ +KL +I + ++IKPG +VLDLG APG W QVA + +G
Sbjct: 18 DLYVQRAVKEGYRSRACYKLKEINDRDRVIKPGMTVLDLGAAPGGWSQVAVEMVGAR--- 74
Query: 68 GSVVGIDV----KKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ V + D + V ++NL + V+LSDM P
Sbjct: 75 GRVIASDILPMDSLADVEFILGDFTEEAVFEALLNLLG---------ESAVDVVLSDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG++ D S+ L A+DLA + L+ GG LV K+ + +
Sbjct: 126 NMSGVSAVDQPRSMYLVELALDLA------------------TQTLEKGGTLVSKVFQGE 167
>gi|225717720|gb|ACO14706.1| ribosomal RNA methyltransferase CG11447 [Caligus clemensi]
Length = 249
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 10/144 (6%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
+ D + ++AQ GY ARSA+KLL+I +++K+++P +V++ G APG+W QV Q +
Sbjct: 56 SKDIYVKKAQSEGYRARSAYKLLEINEKFKILRPKMTVMECGGAPGSWTQVLTQKV---- 111
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSP-KQKGFSVILSDMCPS 124
+ G V+ D+ P H Q+ LP Q L K GF ++LSDM P+
Sbjct: 112 HSGEVISCDLLDYD-PVDHAIILPQS----DFTLPQTQEIILGHLKADGFDLVLSDMAPN 166
Query: 125 VSGITTKDAALSVELGMRAVDLAL 148
SG++ + L AL
Sbjct: 167 ASGMSELSHQQILNLSYEVTKFAL 190
>gi|448521064|ref|XP_003868416.1| Trm7 protein [Candida orthopsilosis Co 90-125]
gi|380352756|emb|CCG25512.1| Trm7 protein [Candida orthopsilosis]
Length = 299
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 31/183 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ GY ARSA+KLLQ+ +Q+ L+ + V+DL APG+W QV LG +
Sbjct: 10 DLYYRRAKEDGYRARSAYKLLQLDQQFNLLSNITRVVDLCAAPGSWSQVLSHKLGS-NPD 68
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG------FSVILSDM 121
+V +D++ + P H V T+ AD+ + P + L + G + SD
Sbjct: 69 ARIVAVDLQPM-TPIDH----VTTLQADITH-PKTLQQILDCFKDGGKGDGLADFVCSDG 122
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P V+G+ D + +L A L + +LKPGG V K+
Sbjct: 123 APDVTGLHDLDEYVQHQLVWAAFQLT------------------TCILKPGGSFVAKIFR 164
Query: 182 SQD 184
+D
Sbjct: 165 GRD 167
>gi|257387081|ref|YP_003176854.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomicrobium mukohataei
DSM 12286]
gi|257169388|gb|ACV47147.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halomicrobium mukohataei
DSM 12286]
Length = 262
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 29/188 (15%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ + L+ +VLDLG APG W+QVA +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDETAGLLGQNRTVLDLGAAPGGWMQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRAL---SPKQKGFSV 116
+G V + + P D V+T+ D+ + + +VR + ++ V
Sbjct: 58 VGTGGVVIGVDRQRIDDLDDP----DPTVETIRGDMTDESTKEEVRDVVGAEGDERPVDV 113
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176
++SD+ P+++G D A S+ L +A +A VL GG
Sbjct: 114 VISDLAPNMTGQYDLDHARSIHLARQAFAVA------------------EDVLATGGDFA 155
Query: 177 IKLLESQD 184
+K+ + QD
Sbjct: 156 VKVFDGQD 163
>gi|426202111|gb|EKV52034.1| AdoMet-dependent rRNA methyltransferase SPB1 [Agaricus bisporus
var. bisporus H97]
Length = 902
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D +Y+ A+ GY ARSAFKL+Q+ K+Y ++ +DL APG WLQVA + +
Sbjct: 47 TGKGRLDKYYKLAKEQGYRARSAFKLIQLNKKYNFLEQARCCIDLCAAPGGWLQVASKYM 106
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P ++ +VG+D+ +K P H V T +AD+ + K V+L D
Sbjct: 107 -PTNS--VIVGVDLVPIK-PIPH----VVTFAADITTPHCRNLIQGELKDWKADVVLHDG 158
Query: 122 CPSVSGITTKDAALSVELGMRAVDLAL 148
P+V +DA EL + ++ LA+
Sbjct: 159 APNVGTAWIQDAYSQSELVLMSLKLAV 185
>gi|413958461|ref|ZP_11397700.1| 23S rRNA methyltransferase J [Burkholderia sp. SJ98]
gi|413941041|gb|EKS73001.1| 23S rRNA methyltransferase J [Burkholderia sp. SJ98]
Length = 220
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 44/186 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLIKPG ++DLG PG+W Q A L
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIKPGQVIVDLGSTPGSWSQYARNKLAQGAKR 76
Query: 62 -----GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112
G +D G+++ +D+ ++ V + D R V A + + ++
Sbjct: 77 DAERQGGID--GTIIALDILPMEPISDVTFIQGDFREDEVLAQLDEIVG---------ER 125
Query: 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
+++SDM P++SG+ + DAA L DLAL A LKP
Sbjct: 126 QVDLVISDMAPNLSGVASADAARIEHL----CDLALEFA--------------QNHLKPE 167
Query: 173 GHLVIK 178
G L++K
Sbjct: 168 GALLVK 173
>gi|149202447|ref|ZP_01879419.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Roseovarius sp. TM1035]
gi|149143729|gb|EDM31763.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Roseovarius sp. TM1035]
Length = 238
Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 29/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ GY R+AFK++++ +++ + PG+ VLDLGCAPG W QVA + L
Sbjct: 42 DPYVKRAQVEGYRGRAAFKIMELDDKFRFLVPGARVLDLGCAPGGWCQVAVPRVNALGEK 101
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
G +VG+D+++V+ P + C+ AD + QV+ + V++SDM
Sbjct: 102 QGKAIGRIVGVDLQEVE-PIMGCEIHQLDFMADDAD---QQVKDWLGGKA--DVVMSDMA 155
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
S SG D +R + L A LA VL+ GG V K+L
Sbjct: 156 ASSSGHKQTDH-------LRIIALCEAAAYLAFD-----------VLEVGGTFVSKVL 195
>gi|66357152|ref|XP_625754.1| Spb1p-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
gi|46226949|gb|EAK87915.1| Spb1p-like, FtsJ methylase [Cryptosporidium parvum Iowa II]
Length = 1011
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 42/185 (22%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY ARSAFKL+Q+ +++ + K ++DL APG WLQVA +++G
Sbjct: 13 DRYYHLAKEQGYRARSAFKLIQLAQKFNIFKNCQVLVDLCAAPGGWLQVAKRNMGV---S 69
Query: 68 GSVVGIDVKKVK----VPSLHCD---ARVQTVSADVIN-LPSNQVRALSPKQKGFSVILS 119
++G+D+ +K V + CD R + + D +N +P + V+L
Sbjct: 70 SKIIGVDLVAIKGIPGVTTFKCDITTERCRKLIFDELNGIPVD-------------VVLH 116
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
D P+V KDA + EL + + +LA +L+P G V K+
Sbjct: 117 DGAPNVGTSWDKDAYIQNELVLHSAELA------------------CEILRPNGIFVTKV 158
Query: 180 LESQD 184
S D
Sbjct: 159 FRSTD 163
>gi|307174434|gb|EFN64935.1| Putative ribosomal RNA methyltransferase CG11447 [Camponotus
floridanus]
Length = 246
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVAC-------QS 60
D + +A++ Y RSAFKLLQI ++YK+ PG +V+D G APG+W QVA +S
Sbjct: 45 DPYVEKAKQENYRCRSAFKLLQINEKYKIFCPGLTVIDCGAAPGSWTQVATNLTNSHAKS 104
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
GP+ G V ID K+P + + D + + + K V+LSD
Sbjct: 105 QGPI---GKVYAID----KLPFFPVEGATVLGNMDFTITKTQETLLALLQGKKADVVLSD 157
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLAL 148
M P+ SGI D + L A+ AL
Sbjct: 158 MAPNASGIRAIDHDNIILLAYAALKFAL 185
>gi|326481598|gb|EGE05608.1| rRNA methyltransferase Spb1 [Trichophyton equinum CBS 127.97]
Length = 791
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEC-- 65
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ + +VG+D+ +K +P +V T +D+ K +L D
Sbjct: 66 -MPSQSLIVGVDLSPIKPIP------KVITFQSDITTDKCRATIRQHFKTWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L PGG V K+
Sbjct: 119 APNVGTAWVQDAFSQAELVLQSLKLA------------------TEFLVPGGSFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|190571015|ref|YP_001975373.1| ribosomal RNA large subunit methyltransferase J [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213019536|ref|ZP_03335342.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
gi|190357287|emb|CAQ54715.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Culex quinquefasciatus Pel]
gi|212994958|gb|EEB55600.1| ribosomal RNA large subunit methyltransferase J, putative
[Wolbachia endosymbiont of Culex quinquefasciatus JHB]
Length = 192
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++ + GY +RSA+KL++I ++KL++ G ++DLG PG W QVA + G
Sbjct: 3 DQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVASK------KG 56
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG--FSVILSDMCPSV 125
SV+ +D+K + S V+ + D+I +++ L K K F VILSDM P
Sbjct: 57 ASVIAVDIKPINAIS-----GVECIQCDII----SELEILREKFKDHKFDVILSDMAPES 107
Query: 126 SGITTKDAALSVELGMRAVDLA 147
G+ + D + L A++ A
Sbjct: 108 CGLKSLDHIRIMLLCEAALNFA 129
>gi|72392565|ref|XP_847083.1| ribosomal RNA methyltransferase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62175581|gb|AAX69714.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei]
gi|70803113|gb|AAZ13017.1| ribosomal RNA methyltransferase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 255
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 35/186 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSS--VLDLGCAPGAWLQVACQSLGPLD 65
D F EA+R GYVARSAFKLL++ ++ L G++ V+D+GC+PG+WLQV + G
Sbjct: 23 DPFVLEARRRGYVARSAFKLLEMDDKFTLFSRGNTRVVVDIGCSPGSWLQVIRERCG--- 79
Query: 66 NGGSVVGIDVKKV--KVPSLHCDARVQTVSADVINLPSNQ---VRALSPKQKG-FSVILS 119
+ +V G+DV +V V C + D N + R ++ + G V+ S
Sbjct: 80 DKCAVFGVDVLRVASTVTGAVC------IQGDFTNPAVREELLARMVTVRAAGVVDVVTS 133
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
DMC + +T D EL A+ AL L PGG+ V K+
Sbjct: 134 DMCLNRGTGSTSDRQKQEELNRSALAFALEQ------------------LVPGGNFVCKV 175
Query: 180 LESQDA 185
L S A
Sbjct: 176 LGSPTA 181
>gi|326472373|gb|EGD96382.1| rRNA methyltransferase [Trichophyton tonsurans CBS 112818]
Length = 812
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVATEC-- 65
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ + +VG+D+ +K +P +V T +D+ K +L D
Sbjct: 66 -MPSQSLIVGVDLSPIKPIP------KVITFQSDITTDKCRATIRQHFKTWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L PGG V K+
Sbjct: 119 APNVGTAWVQDAFSQAELVLQSLKLA------------------TEFLVPGGSFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|398837033|ref|ZP_10594346.1| 23S rRNA methylase [Herbaspirillum sp. YR522]
gi|398209602|gb|EJM96272.1| 23S rRNA methylase [Herbaspirillum sp. YR522]
Length = 214
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL +I + +LIKPG ++DLG PG+W Q L + G
Sbjct: 17 DPYVKLAQKEGYRARAAYKLKEIDEDERLIKPGQVIVDLGSTPGSWSQYVRNKLAGAEGG 76
Query: 68 ---GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
G+V+G+D+ +P + A V + D + ++LSDM P+
Sbjct: 77 GIHGTVIGLDM----LP-MEPIADVHFIQGDFREEALLAELEAVLDGRRVDLVLSDMAPN 131
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
+SG+ DAA L +DLA+ A + +KP G L++K
Sbjct: 132 LSGVAIADAARVEHL----IDLAIEFAQVH--------------MKPSGALLVK 167
>gi|209885593|ref|YP_002289450.1| ribosomal RNA large subunit methyltransferase J [Oligotropha
carboxidovorans OM5]
gi|337740807|ref|YP_004632535.1| ribosomal RNA large subunit methyltransferase E [Oligotropha
carboxidovorans OM5]
gi|386029824|ref|YP_005950599.1| ribosomal RNA large subunit methyltransferase E [Oligotropha
carboxidovorans OM4]
gi|226705298|sp|B6JHM9.1|RLME_OLICO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|209873789|gb|ACI93585.1| ribosomal RNA large subunit methyltransferase J [Oligotropha
carboxidovorans OM5]
gi|336094892|gb|AEI02718.1| ribosomal RNA large subunit methyltransferase E [Oligotropha
carboxidovorans OM4]
gi|336098471|gb|AEI06294.1| ribosomal RNA large subunit methyltransferase E [Oligotropha
carboxidovorans OM5]
Length = 225
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R G+ +R+A+KL ++ +Y +K G +V+DLG APG W Q+A + +G
Sbjct: 33 DPYVAQAKRDGFRSRAAYKLREMDDKYHFLKQGQAVVDLGAAPGGWSQIAAKRVGAEAGR 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ ID+ ++ ++P + A++ +S D ++RA+ G +++SDM + +
Sbjct: 93 GKVIAIDLLEMGEIPGVTF-AQLDFLSDDA----PEKLRAMLG--GGADIVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L AA A+ VL PGG + K+ +S
Sbjct: 146 GHRKTDQ-------LRIVGLVESAAAFAAE-----------VLNPGGTFLAKVFQS 183
>gi|7110661|ref|NP_036412.1| putative ribosomal RNA methyltransferase 1 isoform a [Homo sapiens]
gi|397471349|ref|XP_003807258.1| PREDICTED: putative ribosomal RNA methyltransferase 1 isoform 1
[Pan paniscus]
gi|12643879|sp|Q9UET6.2|RRMJ1_HUMAN RecName: Full=Putative ribosomal RNA methyltransferase 1; AltName:
Full=Protein ftsJ homolog 1; AltName: Full=rRNA
(uridine-2'-O-)-methyltransferase
gi|3334739|emb|CAA06749.1| JM23 [Homo sapiens]
gi|23270836|gb|AAH23584.1| FtsJ homolog 1 (E. coli) [Homo sapiens]
gi|119571167|gb|EAW50782.1| FtsJ homolog 1 (E. coli), isoform CRA_a [Homo sapiens]
gi|119571168|gb|EAW50783.1| FtsJ homolog 1 (E. coli), isoform CRA_a [Homo sapiens]
gi|189054765|dbj|BAG37587.1| unnamed protein product [Homo sapiens]
gi|307686265|dbj|BAJ21063.1| FtsJ homolog 1 [synthetic construct]
gi|312151394|gb|ADQ32209.1| FtsJ homolog 1 (E. coli) [synthetic construct]
gi|410222314|gb|JAA08376.1| FtsJ homolog 1 [Pan troglodytes]
gi|410222318|gb|JAA08378.1| FtsJ homolog 1 [Pan troglodytes]
gi|410252886|gb|JAA14410.1| FtsJ homolog 1 [Pan troglodytes]
gi|410252890|gb|JAA14412.1| FtsJ homolog 1 [Pan troglodytes]
gi|410290770|gb|JAA23985.1| FtsJ homolog 1 [Pan troglodytes]
gi|410290774|gb|JAA23987.1| FtsJ homolog 1 [Pan troglodytes]
gi|410350185|gb|JAA41696.1| FtsJ homolog 1 [Pan troglodytes]
Length = 329
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ K+++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + K +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|384918281|ref|ZP_10018363.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
357]
gi|384467766|gb|EIE52229.1| ribosomal RNA large subunit methyltransferase J [Citreicella sp.
357]
Length = 254
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 37/182 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ GY R+A+K+L++ ++Y+ + PG+ V+DLGCAPG W QVA + L
Sbjct: 55 DPYVKRAQTDGYRGRAAYKILELDEKYRFLVPGARVVDLGCAPGGWCQVAVPRVNALGER 114
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK----GFSVIL 118
G V+G+D+++V V A++ L + A ++ G +V++
Sbjct: 115 AGKAQGYVLGVDLQEV----------VPIAGAEIHQLDFMEDDADEKVKEWLGGGATVVM 164
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
SDM S SG D + L A A VL+PGG V K
Sbjct: 165 SDMAASSSGHKQTDHLRIIALCEAAAHFAF------------------DVLEPGGTFVAK 206
Query: 179 LL 180
+L
Sbjct: 207 VL 208
>gi|225552371|ref|ZP_03773311.1| ribosomal RNA large subunit methyltransferase J [Borrelia sp. SV1]
gi|225371369|gb|EEH00799.1| ribosomal RNA large subunit methyltransferase J [Borrelia sp. SV1]
Length = 192
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 13/142 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A+R GY+ARS +KL++I +++ L G +VLD+G +PG++ Q A + L
Sbjct: 6 DEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYKKLKR---- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G +V +D+ + L D + D+ + + ++ P +S+++SD+ P +
Sbjct: 61 GILVSVDINDI---GLRYDDNFYFIKGDIFSDDTVFKINTFRP----YSLVISDVAPKTT 113
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D + S L MR +DL+L
Sbjct: 114 GNRLVDTSNSFNLSMRIIDLSL 135
>gi|156101269|ref|XP_001616328.1| FtsJ-like methyltransferase [Plasmodium vivax Sal-1]
gi|148805202|gb|EDL46601.1| FtsJ-like methyltransferase, putative [Plasmodium vivax]
Length = 1006
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y+ A+ GY ARSAFKL+QI ++Y + K + ++DL APG WLQVA ++ +
Sbjct: 13 DKYYKLAKSAGYRARSAFKLIQIAQKYNIFKDANILIDLCAAPGGWLQVAYKN---MKRS 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
+++G+D+ VP D V T+ D+ Q++ + +K VIL+D P+V
Sbjct: 70 STIIGVDL----VPIRKIDNNVITLKCDITTGACIKQIKNIIKNEKA-DVILNDGAPNVG 124
Query: 127 GITTKDA 133
+ D+
Sbjct: 125 TTYSYDS 131
>gi|373450762|ref|ZP_09542726.1| Ribosomal RNA large subunit methyltransferase J [Wolbachia
pipientis wAlbB]
gi|371932007|emb|CCE77739.1| Ribosomal RNA large subunit methyltransferase J [Wolbachia
pipientis wAlbB]
Length = 192
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 17/142 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++ + GY +RSA+KL++I ++KL++ G ++DLG PG W QVA + G
Sbjct: 3 DQYVQKTNKDGYRSRSAYKLIEIDDKFKLLQQGQKIIDLGAFPGGWSQVASK------KG 56
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG--FSVILSDMCPSV 125
SV+ +D+K + S V+ + D+I +++ L K K F VILSDM P
Sbjct: 57 ASVIAVDIKPINAIS-----GVECIQCDII----SELEILREKFKDHKFDVILSDMAPES 107
Query: 126 SGITTKDAALSVELGMRAVDLA 147
G+ + D + L A++ A
Sbjct: 108 CGLKSLDHIRIMLLCEAALNFA 129
>gi|299133659|ref|ZP_07026853.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Afipia sp. 1NLS2]
gi|298591495|gb|EFI51696.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Afipia sp. 1NLS2]
Length = 226
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KL ++ +Y +K G +V+DLG APG W Q+A + +G
Sbjct: 33 DPYVMQAKRDGYRSRAAYKLREMDDKYHFLKQGQAVVDLGAAPGGWSQIAAKRVGAEAGK 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G V+ ID+ ++ ++P + A++ ++ D ++RA+ G +++SDM + +
Sbjct: 93 GKVIAIDLLEMGEIPGVTF-AQLDFLADDA----PEKLRAMLG--GGADIVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L AA A+ VL PGG + K+ +S
Sbjct: 146 GHRKTDQ-------LRIVGLVESAAAFAAE-----------VLNPGGVFLAKVFQS 183
>gi|340721146|ref|XP_003398986.1| PREDICTED: putative rRNA methyltransferase 3-like isoform 2 [Bombus
terrestris]
Length = 823
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 30/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY+ A+ GY +R+AFKL+QI ++++ ++ +DL APG W+Q+A Q++ P+ +
Sbjct: 14 DKFYQLAKETGYRSRAAFKLIQINRKFEFLQKSRVCIDLCAAPGGWMQIARQNM-PVSS- 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS--VILSDMCPSV 125
V+G+D+ +K P C + V+ ++ D + ++S + K + V+L D P+V
Sbjct: 72 -VVIGVDLFPIK-PIPGCISLVEDITTDKCRV------SISRELKTWKADVVLHDGAPNV 123
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
DA + L + A+ +A + L+PGG + K+ S+D
Sbjct: 124 GKNWLHDAYQQIVLTLAALKMA------------------THFLRPGGWFITKVFRSKD 164
>gi|328770294|gb|EGF80336.1| hypothetical protein BATDEDRAFT_11420 [Batrachochytrium
dendrobatidis JAM81]
Length = 221
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 36/188 (19%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A D F + + +RSAFKL ++Q +Y +KPG VLDLG APG W QVA ++ P D
Sbjct: 12 ASDPFVKNRIKWNLRSRSAFKLKELQSKYNFMKPGQVVLDLGAAPGGWTQVALDAVWP-D 70
Query: 66 NGGSVVG------------IDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG 113
S+ G ID ++ + +H DA +Q + + P P+
Sbjct: 71 RAQSMDGRVIAVDLLPIEPIDGAEILLGDVHEDAVLQQIYT-LAAYP------YQPEGPV 123
Query: 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173
V+LSDM S +G + DAA L A+ +A P +LKPGG
Sbjct: 124 VDVVLSDMAHSFTGHRSTDAARVQNLCEFALSVASHP----------------WLLKPGG 167
Query: 174 HLVIKLLE 181
+ + K L
Sbjct: 168 NFLCKYLR 175
>gi|303325468|ref|ZP_07355911.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio sp.
3_1_syn3]
gi|345892425|ref|ZP_08843246.1| ribosomal RNA large subunit methyltransferase E [Desulfovibrio sp.
6_1_46AFAA]
gi|302863384|gb|EFL86315.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio sp.
3_1_syn3]
gi|345047186|gb|EGW51053.1| ribosomal RNA large subunit methyltransferase E [Desulfovibrio sp.
6_1_46AFAA]
Length = 210
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 31/182 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A+R Y ARS +KL ++ +++L+KPG VLDLG APG+W + +G +
Sbjct: 6 DHYFLKAKRENYPARSVYKLKELDAKFRLLKPGMKVLDLGAAPGSWSLGVAEKVG---SK 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS---NQVRALSPKQKGFSVILSDMCPS 124
G V+ D++ + +V + DV + ++ L P F +++SDM P
Sbjct: 63 GLVLACDIQSTETA---FPPQVLFMQEDVFQRSAAFEAKLAELGP----FDLVISDMAPR 115
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+G D A S+EL + AL A L LK GG+ V+K+ D
Sbjct: 116 TTGTRFTDQARSLELTLE----ALAVACLH--------------LKQGGNFVVKIFMGPD 157
Query: 185 AQ 186
Q
Sbjct: 158 IQ 159
>gi|402910070|ref|XP_003917714.1| PREDICTED: putative ribosomal RNA methyltransferase 1 [Papio
anubis]
Length = 329
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ K+++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + K +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|386781808|ref|NP_001247931.1| putative ribosomal RNA methyltransferase 1 [Macaca mulatta]
gi|355704770|gb|EHH30695.1| Putative ribosomal RNA methyltransferase 1 [Macaca mulatta]
gi|380811278|gb|AFE77514.1| putative ribosomal RNA methyltransferase 1 isoform a [Macaca
mulatta]
gi|383417197|gb|AFH31812.1| putative ribosomal RNA methyltransferase 1 isoform a [Macaca
mulatta]
gi|384946194|gb|AFI36702.1| putative ribosomal RNA methyltransferase 1 isoform a [Macaca
mulatta]
Length = 329
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ K+++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + K +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|349686269|ref|ZP_08897411.1| ribosomal RNA large subunit 23S methyltransferase RrmJ
[Gluconacetobacter oboediens 174Bp2]
Length = 254
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 31/175 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ G+ +R+AFKL+++ +++LI+PG+ V+DLG APG W QVA +
Sbjct: 62 DPYVQAAQKQGWRSRAAFKLIELDDRFQLIRPGARVVDLGAAPGGWTQVAVKR-----GA 116
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
VVG+D+ V VP T+ N P R V++SDM P+ +
Sbjct: 117 AEVVGVDLLPVDPVPGA-------TIIEGDFNDPDMPDRLTGLLGGRADVVMSDMAPNTT 169
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D + L A+D A+ +L PGG V K+ +
Sbjct: 170 GHAPTDHLRIIGLAELALDFAV------------------RILAPGGTFVAKVFQ 206
>gi|183600359|ref|ZP_02961852.1| hypothetical protein PROSTU_03922 [Providencia stuartii ATCC 25827]
gi|386743786|ref|YP_006216965.1| 23S rRNA methyltransferase J [Providencia stuartii MRSN 2154]
gi|188020150|gb|EDU58190.1| ribosomal RNA large subunit methyltransferase J [Providencia
stuartii ATCC 25827]
gi|384480479|gb|AFH94274.1| 23S rRNA methyltransferase J [Providencia stuartii MRSN 2154]
Length = 209
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G +R+ FKL +IQ+ K+ KPG +V+DLG APG W Q +G +
Sbjct: 20 DKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTVVDLGAAPGGWSQYVVSQIG---HN 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ V V L D R + V A ++ + K V++SDM P
Sbjct: 77 GRVIACDILPMDPIVGVDFLQGDFREEAVLAALLERVGD---------KKVQVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D S+ L A+D+ VL PGG ++K+ + +
Sbjct: 128 NMSGTPAVDIPRSMYLVELALDMC------------------RAVLAPGGSFIVKVFQGE 169
>gi|302908896|ref|XP_003049953.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730890|gb|EEU44240.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 833
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA + +
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVMP 67
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 68 P---NSLIVGVDLAPIKPIP------RVITFQSDITTEKCRATIRQHFKTWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +D+ EL ++A+ LA + L GG V K+
Sbjct: 119 APNVGTAWAQDSFNQAELALQAMKLA------------------TEFLIEGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|440491658|gb|ELQ74280.1| Putative SAM-dependent rRNA methyltransferase SPB1
[Trachipleistophora hominis]
Length = 553
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 38/186 (20%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D +Y A+ GY ARSA+KL+Q+ K++ ++ SSV+DL CAPG WLQVA Q
Sbjct: 8 GKKRLDKYYHLAKEQGYRARSAYKLIQLNKKFNFLQSCSSVVDLCCAPGGWLQVAVQHNI 67
Query: 63 PLDNGGSVVGID---VKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118
P ++G+D +KK+ V S+ D + +++N+ +L
Sbjct: 68 P-----DIIGVDLYPIKKINNVKSIVGDITLSGTVKEILNIAGET-----------DCVL 111
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
D P+V +DA EL + A+ ++ + +LK G + K
Sbjct: 112 HDGAPNVGVCWEQDAFEQNELVLHAIKIS------------------TKILKKDGIFLTK 153
Query: 179 LLESQD 184
+ S+D
Sbjct: 154 VFRSKD 159
>gi|71066294|ref|YP_265021.1| 23S rRNA methylase, heat shock protein [Psychrobacter arcticus
273-4]
gi|83305666|sp|Q4FQX1.1|RLME_PSYA2 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|71039279|gb|AAZ19587.1| 23S rRNA Um-2552 2'-O-methyltransferase [Psychrobacter arcticus
273-4]
Length = 210
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 36/184 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY AR+A+KLL+I ++ LIK G +V+DLG APG+W QVA Q +G
Sbjct: 24 DHYVQKAQKDGYRARAAYKLLEINEKTNLIKKGMTVVDLGSAPGSWSQVAGQLVG---EK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMC 122
G ++ D+ + V + D R V ++ + QV V+LSDM
Sbjct: 81 GILIASDILPMDTLPDVTFIQGDFREPEVFDHIMAEVGDRQV----------DVVLSDMA 130
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+ +G + D + L AVD AL L GG L++K+ +
Sbjct: 131 PNTAGNSAIDQPRMMYLCELAVDFAL------------------ATLPEGGALIMKVFQG 172
Query: 183 QDAQ 186
+ Q
Sbjct: 173 EGTQ 176
>gi|380811280|gb|AFE77515.1| putative ribosomal RNA methyltransferase 1 isoform b [Macaca
mulatta]
gi|383417199|gb|AFH31813.1| putative ribosomal RNA methyltransferase 1 isoform b [Macaca
mulatta]
Length = 327
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ K+++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + K +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|334332792|ref|XP_001379067.2| PREDICTED: putative ribosomal RNA methyltransferase 2-like
[Monodelphis domestica]
Length = 246
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 29/180 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D F + A+ Y RSAFKLL+I +++++ PG VLD G APGAW QVA Q +
Sbjct: 41 DPFVKAAKVENYRCRSAFKLLEINEKHQIFHPGLRVLDCGAAPGAWSQVAVQKVNAAGTD 100
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDM 121
P + G V+G+D+ + + + ADV + + ++++ P QK VILSDM
Sbjct: 101 PNSSVGFVLGVDLLHI----FPLEGAIFLCPADVTDSRTFDKIQEQLPGQKA-DVILSDM 155
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+ +GI D + + + ++ S +L PGG + K +
Sbjct: 156 APNATGIRELDHQNLISMCLSLLNFT------------------SSILLPGGTFLCKFWD 197
>gi|219685646|ref|ZP_03540461.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
Far04]
gi|219672834|gb|EED29858.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
Far04]
Length = 192
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 13/142 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A+R GY+ARS +KL++I +++ L G +VLD+G +PG++ Q A + L
Sbjct: 6 DEYFQKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYKKLKR---- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +V +D+ + SL + D+ + + ++ P +S+I+SD+ P +
Sbjct: 61 GVLVSVDINDI---SLRYVDNFYFIKGDIFSDDTAYKINKFGP----YSLIISDVAPKTT 113
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D + S L MR +DL+
Sbjct: 114 GNRLVDTSNSFNLSMRIIDLSF 135
>gi|426395794|ref|XP_004064145.1| PREDICTED: putative ribosomal RNA methyltransferase 1 [Gorilla
gorilla gorilla]
Length = 329
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ K+++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + K +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|387886134|ref|YP_006316433.1| ribosomal RNA large subunit methyltransferase J [Francisella
noatunensis subsp. orientalis str. Toba 04]
gi|386870950|gb|AFJ42957.1| ribosomal RNA large subunit methyltransferase J [Francisella
noatunensis subsp. orientalis str. Toba 04]
Length = 206
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++ +A +LGY +R++FK+L+IQ +Y L K ++DLG APG W + + +G N
Sbjct: 17 DYYVAQANKLGYRSRASFKILEIQDKYNLFKQNMFIVDLGAAPGGWSEQVIKFIG---NN 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G ++ +D+ ++ P + S+D NQ+ ++SDM ++SG
Sbjct: 74 GKLIALDLLEM-TPIAGVEFIQGNFSSDETYEKLNQL----INNNKIDCVISDMAQNLSG 128
Query: 128 ITTKDAALSVELGMRAVDLA 147
T D A S+ L A+D A
Sbjct: 129 NKTSDQARSIYLLELALDFA 148
>gi|226329691|ref|ZP_03805209.1| hypothetical protein PROPEN_03603 [Proteus penneri ATCC 35198]
gi|225202877|gb|EEG85231.1| ribosomal RNA large subunit methyltransferase J [Proteus penneri
ATCC 35198]
Length = 209
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G+ +R+ FKL +IQ+ + KPG +V+DLG APG W Q Q LG +
Sbjct: 20 DKYVQQAQKKGFRSRAWFKLEEIQQSDNIFKPGMTVVDLGAAPGGWSQYVVQKLG---SK 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVIN-LPSNQVRALSPKQKGFSVILSDMC 122
G ++ D+ V V L D R + V +++ + N+V+ V++SDM
Sbjct: 77 GRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLDRVGENKVQ----------VVMSDMA 126
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D S+ L V+LAL D D VL PGG ++K+ +
Sbjct: 127 PNMSGTPAVDIPRSMYL----VELAL------------DMCRD--VLAPGGSFIVKVFQG 168
Query: 183 Q 183
+
Sbjct: 169 E 169
>gi|452004634|gb|EMD97090.1| hypothetical protein COCHEDRAFT_1086770 [Cochliobolus
heterostrophus C5]
Length = 357
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 9/101 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DFF +EA+ G +R+AFKLL++ ++K +PG +V+DLG APG+W QVA P
Sbjct: 63 DFFAKEARVQGLKSRAAFKLLELNDKHKFFRPGQTVVDLGYAPGSWSQVAVNRTSP---D 119
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVIN-LPSNQVRAL 107
G V+GID+ + P V T+ D ++ + +QVRA
Sbjct: 120 GRVIGIDLIPAQPPRG-----VSTIQGDFLSPIIQDQVRAY 155
>gi|317027306|ref|XP_001400621.2| 21S rRNA (uridine(2791)-2'-O)-methyltransferase MRM2 [Aspergillus
niger CBS 513.88]
Length = 270
Score = 72.4 bits (176), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 92/211 (43%), Gaps = 58/211 (27%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F REA G +R+AFKLLQI ++Y + + G +V+DLG APG+W QVA P
Sbjct: 40 DRFTREAAVQGLKSRAAFKLLQIDEKYHIFESGQTVVDLGYAPGSWSQVAVARTQP---H 96
Query: 68 GSVVGIDVKKVKVPS-------LHCDARVQTVSADVI--------NLPSNQVRA------ 106
G V+G+D+ + P D +Q + + + PS + A
Sbjct: 97 GRVLGVDIIPAQPPKGVSTIQGNFLDPNIQAYVREFVRDANRGRPHPPSTILDAEYDDTQ 156
Query: 107 ------------LSPKQ--KGFS--VILSDMCPSVSGITTKDAALSVELGMRAVDLALGP 150
PKQ + +S V+LSDM + SGI+ KD A S++L A+ +
Sbjct: 157 LKSDANASSDKQTDPKQWDRNYSVDVVLSDMMMNTSGISFKDHAGSMDLCHAALQFS--- 213
Query: 151 AALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
VL+ GGH V K +
Sbjct: 214 ---------------QEVLRTGGHFVCKFYQ 229
>gi|346992751|ref|ZP_08860823.1| ribosomal RNA large subunit methyltransferase E [Ruegeria sp. TW15]
Length = 238
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ GY R+AFK+L++ +++ + PG+ V+DLGCAPG WLQVA Q + L
Sbjct: 42 DPYVKRAQAEGYRGRAAFKILELDDKFRFLVPGARVVDLGCAPGGWLQVAVQRVNALGEK 101
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG--FSVILSD 120
G+V+G+D+++V+ P V +A V++ + G V++SD
Sbjct: 102 SGKRIGTVLGVDLQEVE-P-------VAGATAHVLDFMEDDADQKVKDWLGGKADVVMSD 153
Query: 121 MCPSVSGITTKD 132
M + SG D
Sbjct: 154 MAAASSGHKQTD 165
>gi|291406359|ref|XP_002719522.1| PREDICTED: FtsJ homolog 3 [Oryctolagus cuniculus]
Length = 836
Score = 72.4 bits (176), Expect = 9e-11, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY A+ GY +RSAFKL+Q+ ++++ ++ ++LDL APG WLQVA + + P+ +
Sbjct: 13 DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM-PVSS- 70
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
+VG+D+ +K +P+ V T+ D+ Q K V+L+D P+V
Sbjct: 71 -LIVGVDLVPIKPLPN------VVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVG 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
DA L + A+ LA L GG+ + K+ S+D Q
Sbjct: 124 ASWVHDAYSQAHLTLMALRLA------------------CDFLARGGYFITKVFRSRDYQ 165
>gi|260220960|emb|CBA29048.1| Ribosomal RNA large subunit methyltransferase J [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 205
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 20/150 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL--- 64
D + + A + GY AR+A+KL +I + L+KPG V+DLGC PGAW Q + + P
Sbjct: 7 DPYVKLANKEGYRARAAYKLKEIDEALHLVKPGQLVVDLGCTPGAWSQYLRRRMSPQGAA 66
Query: 65 --DNGGSVVGIDVKKVK----VPSLHCDAR-VQTVSADVINLPSNQVRALSPKQKGFSVI 117
+ G+++G+D+ ++ V + D R V+T++ ++ A QK ++
Sbjct: 67 VGEMNGTIIGLDLLPMEPIEGVTFIQGDFREVETLA---------KLEAALGGQKA-DLV 116
Query: 118 LSDMCPSVSGITTKDAALSVELGMRAVDLA 147
+SDM P++SGI++ DAA L A++ A
Sbjct: 117 VSDMAPNLSGISSADAARVEYLVELAIEFA 146
>gi|298368448|ref|ZP_06979766.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
taxon 014 str. F0314]
gi|298282451|gb|EFI23938.1| ribosomal RNA large subunit methyltransferase J [Neisseria sp. oral
taxon 014 str. F0314]
Length = 206
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I ++ KLIK G+ + DLG APG+W QVA + +G +
Sbjct: 18 DHYVHMAQKDGYRARAAYKLLEINEKDKLIKRGTVLADLGSAPGSWSQVAAKLVG---DS 74
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R V A +L + + +++ DM P
Sbjct: 75 GKVFALDILPMDEIEGVSFIQGDFREDDVLARFESLLAG---------RPLDLVICDMAP 125
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D A S L A+D A + LK GG+ ++K+ +
Sbjct: 126 NMSGNAVTDQARSYYLCELALDFA------------------ANHLKTGGNFLVKVFQ 165
>gi|169641976|gb|AAI60685.1| LOC431876 protein [Xenopus laevis]
Length = 852
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 28/185 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D FY A+ GY +RSAFKL+Q+ ++++ ++ +++DL APG WLQVA + +
Sbjct: 8 GKSRKDKFYHLAKETGYRSRSAFKLIQLNRKFQFLQRARALVDLCAAPGGWLQVAAKFM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ + ++GID+ +K +P+ V T+ D+ Q + V+L+D
Sbjct: 67 PVSS--LIIGIDLVPIKPIPN------VLTLQEDITTEDCRQAVKKHLQTWKADVVLNDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V T DA V L + A+ LA L GG + K+
Sbjct: 119 APNVGANWTHDAFSQVHLSLMALRLA------------------CDCLSRGGWFITKIFR 160
Query: 182 SQDAQ 186
S D Q
Sbjct: 161 SSDYQ 165
>gi|195941333|ref|ZP_03086715.1| cell division protein (ftsJ) [Borrelia burgdorferi 80a]
gi|365992334|ref|NP_212447.2| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi B31]
gi|387825966|ref|YP_005805419.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi JD1]
gi|384872622|sp|O51293.2|RLME_BORBU RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|312148291|gb|ADQ30950.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi JD1]
gi|356609333|gb|AAC66697.2| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi B31]
Length = 189
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 13/142 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A+R GY+ARS +KL++I +++ L G +VLD+G +PG++ Q A + L
Sbjct: 3 DEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYKKLKR---- 57
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADV-INLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +V +D+ + L D + D+ ++ ++ P +S+++SD+ P +
Sbjct: 58 GILVSVDINDI---GLRYDDNFYFIKGDIFLDDTVFKINTFKP----YSLVISDVAPKTT 110
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D + S L MR +DL+L
Sbjct: 111 GNRLVDTSNSFNLSMRIIDLSL 132
>gi|90075218|dbj|BAE87289.1| unnamed protein product [Macaca fascicularis]
Length = 299
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ K+++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + K +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|355689325|gb|AER98796.1| FtsJ-like protein 3 [Mustela putorius furo]
Length = 436
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 28/185 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D FY A+ GY +RSAFKL+Q+ ++++ ++ ++LDL APG WLQVA + +
Sbjct: 8 GKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ +VG+D+ +K +P+ V T+ D+ Q K V+L+D
Sbjct: 67 PV--SSLIVGVDLVPIKPLPN------VVTLQEDITTERCRQALRKELKTWKVDVVLNDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V DA L + A+ LA L GG + K+
Sbjct: 119 APNVGASWVHDAYSQAHLTLMALRLA------------------CDFLARGGCFITKVFR 160
Query: 182 SQDAQ 186
S+D Q
Sbjct: 161 SRDYQ 165
>gi|300121815|emb|CBK22389.2| unnamed protein product [Blastocystis hominis]
Length = 840
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 8/141 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY ARSAFKL+Q+ +Q+ + ++DL APG W QVA + + P+++
Sbjct: 10 DKWYALAKQQGYRARSAFKLIQLNRQFNFLSKAHVLIDLCAAPGGWCQVAAKQM-PIES- 67
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+++G+D+ +K +H V+T D+ L V K V+L D P+V G
Sbjct: 68 -TIIGVDLLPIK--PIH---NVKTFQEDITTLSCRDVIKRELHGKHADVVLHDGAPNVGG 121
Query: 128 ITTKDAALSVELGMRAVDLAL 148
+KDA L + ++ LA+
Sbjct: 122 GWSKDAFDQNSLVLHSLRLAV 142
>gi|302879458|ref|YP_003848022.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gallionella
capsiferriformans ES-2]
gi|302582247|gb|ADL56258.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Gallionella
capsiferriformans ES-2]
Length = 206
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 8/141 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY +R+A+KL++I ++ LIKPG ++DLG PG W QVA +G
Sbjct: 17 DPFVQQAQKDGYRSRAAYKLIEINEKDHLIKPGMVIVDLGATPGGWCQVAGAIMG---ET 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ +D+ +P L V+ + D + + S + K +++SDM P+ SG
Sbjct: 74 GKVIALDL----LP-LEPLRGVEFIQGDFRDEAVLKKLEESLQGKPVGLVISDMAPNFSG 128
Query: 128 ITTKDAALSVELGMRAVDLAL 148
++ D S+ L A++ A
Sbjct: 129 VSAVDQDRSIYLAELAMEFAF 149
>gi|355757329|gb|EHH60854.1| Putative ribosomal RNA methyltransferase 1 [Macaca fascicularis]
Length = 329
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ K+++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + K +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|339244263|ref|XP_003378057.1| putative ribosomal RNA large subunit methyltransferase J
[Trichinella spiralis]
gi|316973066|gb|EFV56698.1| putative ribosomal RNA large subunit methyltransferase J
[Trichinella spiralis]
Length = 633
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY +R+AFKL+ + K+++ ++ + ++DL APG WLQVA Q + P+
Sbjct: 12 DKYYNLAKQAGYRSRAAFKLVHLNKKFQFLEKSTCLVDLCAAPGGWLQVASQYM-PVSR- 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
++G+D+ V + +LH V T+ D+ K +L D P+V
Sbjct: 70 -LIIGVDL--VSIKALH---NVITLQNDITTESCLSQIKRELKTWTADCVLHDGSPNVGK 123
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
DA +L + A+ LA S +L+PGG V KL S+D
Sbjct: 124 NWNHDAFQQAQLTLHALRLA------------------SAILRPGGWFVTKLFRSKD 162
>gi|51854285|gb|AAU10666.1| unknown protein [Oryza sativa Japonica Group]
Length = 749
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 60/182 (32%), Positives = 83/182 (45%), Gaps = 33/182 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY A+ GY +R+AFKLLQ+ +++ + +VLDL APG W+QVA P+ G
Sbjct: 11 DKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNH-APV--G 67
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINL-PSNQVRALSPKQKGFSVILSDMC 122
VVG+D+ ++ SL D A V L SN V A F V+L D
Sbjct: 68 AFVVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAA-------FDVVLHDGS 120
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+V G ++A L + AV LA + L P G + K+ S
Sbjct: 121 PNVGGAWAQEATAQSSLVIDAVRLA------------------TMFLAPKGAFITKVFRS 162
Query: 183 QD 184
QD
Sbjct: 163 QD 164
>gi|312372717|gb|EFR20615.1| hypothetical protein AND_19798 [Anopheles darlingi]
Length = 890
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 91/178 (51%), Gaps = 28/178 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY+ A+ GY +R+AFKL+Q+ +++ ++ +DL APG W+QVA Q++ P+ +
Sbjct: 13 DKFYKLAKESGYRSRAAFKLIQLNRRFAFLQQSQVCIDLCAAPGGWMQVAKQNM-PVSS- 70
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
V+G+D+ +K VP C + V +++D S+ + L K V+L+D P+V
Sbjct: 71 -IVIGVDLYPIKNVPG--CISLVGDITSD--KTKSDLAKEL--KTWKADVVLNDGAPNVG 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
DA V L + AV LA + L+PGG + K+ S+D
Sbjct: 124 KNWLHDAYQQVCLTLSAVKLA------------------TQFLRPGGWFITKVFRSKD 163
>gi|315044531|ref|XP_003171641.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma gypseum
CBS 118893]
gi|311343984|gb|EFR03187.1| AdoMet-dependent rRNA methyltransferase spb1 [Arthroderma gypseum
CBS 118893]
Length = 812
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEC-- 65
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ + +VG+D+ +K +P +V T +D+ K +L D
Sbjct: 66 -MPSQSLIVGVDLSPIKAIP------KVITFQSDITTDKCRATIRQHFKTWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L PGG V K+
Sbjct: 119 APNVGTAWVQDAFSQAELVLQSLKLA------------------TEFLVPGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|102139739|gb|ABF69946.1| FtsJ-like methyltransferase family protein [Musa acuminata]
Length = 847
Score = 72.0 bits (175), Expect = 9e-11, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 35/183 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY A+ GY +R+AFKLLQ+ +Y+ + S+LDL APG WLQVA + P+ G
Sbjct: 11 DKFYYLAKEQGYRSRAAFKLLQLDAKYRFLPSARSILDLCAAPGGWLQVAVRH-APV--G 67
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRAL------SPKQKGFSVILSDM 121
V+G+D+ ++ V+ A V ++ + + RA S F V+L D
Sbjct: 68 SFVIGVDLFPIR--------PVRGAHALVEDITTPRCRAAIKRLMDSNGCSAFDVVLHDG 119
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V G ++A L + +V LA + L P G V K+
Sbjct: 120 SPNVGGAWAQEATSQSSLVVDSVRLA------------------TNFLAPKGTFVTKVFR 161
Query: 182 SQD 184
SQD
Sbjct: 162 SQD 164
>gi|429964490|gb|ELA46488.1| 23S rRNA (uridine(2552)-2'-O-)-methyltransferase [Vavraia culicis
'floridensis']
Length = 314
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY ARSA+KL+Q+ K++ + +SV+DL CAPG WLQVA Q P
Sbjct: 13 DKYYHLAKEQGYRARSAYKLIQLNKKFNFLSTCTSVVDLCCAPGGWLQVAVQHNIP---- 68
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
VVG+D+ +K ++ V A V ++ S V+ + +L D P+V
Sbjct: 69 -DVVGVDLYPIK--------KINNVKAIVGDITSPGTVKEILSMVGEADCVLHDGAPNVG 119
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
KDA EL + A+ ++ + +LK G + K+ S+D
Sbjct: 120 VCWEKDAFEQNELVLHAIKIS------------------TKILKKDGVFLTKVFRSKD 159
>gi|255712339|ref|XP_002552452.1| KLTH0C05214p [Lachancea thermotolerans]
gi|238933831|emb|CAR22014.1| KLTH0C05214p [Lachancea thermotolerans CBS 6340]
Length = 303
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 29/182 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR+A+ GY ARSAFKLLQ+ +Q+ + + V+DL APG+W QV + L D
Sbjct: 10 DLYYRKAKEEGYRARSAFKLLQLDEQFHFLDNVTRVVDLCAAPGSWSQVLSRRLFDDDTE 69
Query: 68 GS----VVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMC 122
+ +V +D++ P D V T+ AD+ + + N++ L +K + SD
Sbjct: 70 NNSSKRIVAVDLQ----PMFPID-NVTTIQADITHPKTLNKIMDLFEGEKA-DFVCSDGA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P V+G+ D + +L + A+ L + +L+ GG V K+
Sbjct: 124 PDVTGLHDLDEYVQQQLILSALQLT------------------TCLLREGGVFVAKIFRG 165
Query: 183 QD 184
+D
Sbjct: 166 RD 167
>gi|291415281|ref|XP_002723882.1| PREDICTED: FtsJ homolog 2 [Oryctolagus cuniculus]
Length = 740
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 13/147 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D F + A+ Y RSAFKLL++ +++++++PG VLD G APG+W QVA Q +
Sbjct: 41 DPFVKAARAESYRCRSAFKLLEMDRKHRILRPGLRVLDCGAAPGSWSQVAVQRVNAAGTD 100
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFS-VILSD 120
P G V+G+DV V + ADV++ + ++R L P G + V+LSD
Sbjct: 101 PSSPVGFVLGVDVLHV----FPLEGATFLCPADVMDPGAWPRIRELLP--GGVADVVLSD 154
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLA 147
M P+ +GI D + L + VDLA
Sbjct: 155 MAPNATGIRALDHDRLISLCLALVDLA 181
>gi|449281429|gb|EMC88509.1| Putative ribosomal RNA methyltransferase 2, partial [Columba livia]
Length = 234
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 75/132 (56%), Gaps = 13/132 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A+R Y RSAFKLL+I ++++++PG VLD G APGAW QVA + + L
Sbjct: 35 DPFVKAAKRQHYRCRSAFKLLEIDDKHRILRPGLCVLDCGAAPGAWSQVAVERVNALGTD 94
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILSD 120
G V+G+D+ +++ L + V D+ + PS ++ L P +K V+LSD
Sbjct: 95 PAVPTGFVLGVDL--LRISPL--EGAVFLSERDIAD-PSTVRAIQGLLPAEK-VDVVLSD 148
Query: 121 MCPSVSGITTKD 132
M P+ +GI D
Sbjct: 149 MAPNATGIKELD 160
>gi|381405890|ref|ZP_09930574.1| 23S rRNA methyltransferase J [Pantoea sp. Sc1]
gi|380739089|gb|EIC00153.1| 23S rRNA methyltransferase J [Pantoea sp. Sc1]
Length = 209
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ G +R+ FKL +IQ+ KL KPG +V+DLG APG W Q Q +G N
Sbjct: 20 DKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPGGWSQYVVQQIG---NK 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ V V L D R ++ VIN +V ++ V++SDM P
Sbjct: 77 GRIIACDILPMDPIVGVDFLQGDFREES----VINALLERV-----GEEKVQVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D S+ L V+LAL +L PGG V+K+ +
Sbjct: 128 NMSGTPAVDIPRSMYL----VELAL--------------EMCRDILAPGGSFVVKVFQ 167
>gi|359435692|ref|ZP_09225877.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20652]
gi|357917675|dbj|GAA62126.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20652]
Length = 209
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL ++Q + KL++P +V+DLG APG+W Q + +G +
Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEVQNRDKLLRPSMTVVDLGAAPGSWSQYLVEKVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V+N ++ K V+LSDM P
Sbjct: 77 GQVIACDILPMDSLAGVDFLQGDFREEA----VLNALLKRIDG-----KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D A S+ L A+D+ S VLK G ++K+ + +
Sbjct: 128 NMSGNNSVDQAGSMYLVELALDMC------------------SQVLKKNGAFIVKVFQGE 169
>gi|315127241|ref|YP_004069244.1| 23S rRNA methyltransferase [Pseudoalteromonas sp. SM9913]
gi|315015755|gb|ADT69093.1| 23S rRNA methyltransferase J [Pseudoalteromonas sp. SM9913]
Length = 209
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL +IQ + KL++P +V+DLG APG+W Q + +G +
Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEIQNKDKLLRPAMTVVDLGAAPGSWSQYLAEKVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ + V L D R + V ++ K V+LSDM P
Sbjct: 77 GQVVACDILPMDSLAGVDFLQGDFREEAVLDALLKRIDG---------KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D A S+ L A+D+ + VLK G ++K+ + +
Sbjct: 128 NMSGNNSVDQAGSMYLVELALDMC------------------NQVLKKNGAFIVKVFQGE 169
>gi|338974098|ref|ZP_08629460.1| ribosomal RNA large subunit methyltransferase J [Bradyrhizobiaceae
bacterium SG-6C]
gi|338232825|gb|EGP07953.1| ribosomal RNA large subunit methyltransferase J [Bradyrhizobiaceae
bacterium SG-6C]
Length = 230
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 30/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R G+ +R+A+KL ++ +++L+K G V+DLG APG W Q+A + +G L+
Sbjct: 33 DPYVAQAKRDGFRSRAAYKLQEMDDKHRLLKRGQVVVDLGAAPGGWSQIAAKRVGSLEGK 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPS 124
G VV ID+ + +VP V D + N P +++RA+ G V++SDM +
Sbjct: 93 GKVVAIDLLDMPEVPG------VTFAQMDFLDDNAP-DKLRAMIG--GGADVVMSDMAAN 143
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +R + L AA A +L PGG + K+ +
Sbjct: 144 TTGHRKTDQ-------LRIIGLVESAAAFACE-----------ILNPGGTFLAKVFQ 182
>gi|220921508|ref|YP_002496809.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
nodulans ORS 2060]
gi|219946114|gb|ACL56506.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylobacterium
nodulans ORS 2060]
Length = 255
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 36/182 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY +R+A+KLL+I +++ L+KPG V+DLG APG W QVA +G
Sbjct: 37 DPYVARAKREGYRSRAAYKLLEIDERFHLLKPGYRVVDLGAAPGGWSQVAAAKVGSHPGA 96
Query: 68 ----GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
G VVGID+ +++ V + D T A +I L +++S
Sbjct: 97 PKPRGRVVGIDLLEIEPLPGVDFITLDFLDATAPARLIELLGGPA----------DLVMS 146
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
DM + +G D +R + LA AA A VL PGG + K+
Sbjct: 147 DMAANATGHKKTDH-------LRIMGLAETAAAFARE-----------VLAPGGAYLAKV 188
Query: 180 LE 181
L+
Sbjct: 189 LQ 190
>gi|218249912|ref|YP_002374835.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi ZS7]
gi|223889029|ref|ZP_03623620.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 64b]
gi|224533189|ref|ZP_03673789.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi WI91-23]
gi|224533742|ref|ZP_03674330.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi CA-11.2a]
gi|225549132|ref|ZP_03770107.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 94a]
gi|225550187|ref|ZP_03771147.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 118a]
gi|226320614|ref|ZP_03796174.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 29805]
gi|226321630|ref|ZP_03797156.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi Bol26]
gi|254809547|sp|B7J1P0.1|RLME_BORBZ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|218165100|gb|ACK75161.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi ZS7]
gi|223885845|gb|EEF56944.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 64b]
gi|224511916|gb|EEF82317.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi WI91-23]
gi|224513035|gb|EEF83398.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi CA-11.2a]
gi|225369299|gb|EEG98752.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 118a]
gi|225370358|gb|EEG99796.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 94a]
gi|226232819|gb|EEH31572.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi Bol26]
gi|226234033|gb|EEH32754.1| ribosomal RNA large subunit methyltransferase J [Borrelia
burgdorferi 29805]
Length = 192
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 13/142 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A+R GY+ARS +KL++I +++ L G +VLD+G +PG++ Q A + L
Sbjct: 6 DEYSKKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYKKLKR---- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADV-INLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +V +D+ + L D + D+ ++ ++ P +S+++SD+ P +
Sbjct: 61 GILVSVDINDI---GLRYDDNFYFIKGDIFLDDTVFKINTFKP----YSLVISDVAPKTT 113
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D + S L MR +DL+L
Sbjct: 114 GNRLVDTSNSFNLSMRIIDLSL 135
>gi|341583433|ref|YP_004763924.1| cell division protein ftsJ [Rickettsia heilongjiangensis 054]
gi|350273216|ref|YP_004884529.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
japonica YH]
gi|340807659|gb|AEK74247.1| cell division protein ftsJ [Rickettsia heilongjiangensis 054]
gi|348592429|dbj|BAK96390.1| ribosomal RNA large subunit methyltransferase J [Rickettsia
japonica YH]
Length = 227
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 30/167 (17%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN--GGSVVGIDV 75
G+ +R+A+KLL+I +++KL P ++DLG APG W QVA + + DN ++ IDV
Sbjct: 45 GFRSRAAYKLLEIHEKFKLFTPNMKIVDLGAAPGGWSQVASKLIKASDNNLNNKIISIDV 104
Query: 76 KKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCPSVSGITTKDA 133
+++ H A V+ D + + ++AL + +++SDM + G D
Sbjct: 105 LEIE----HI-AGVEFFQKDFFEADTEELIIQALDGRA---DIVMSDMASNTIGHKATDH 156
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++ L +A + AL VLKP GH + K+
Sbjct: 157 IRTLLLCEQAFEFAL------------------KVLKPSGHFIAKIF 185
>gi|87119799|ref|ZP_01075696.1| cell division protein FtsJ [Marinomonas sp. MED121]
gi|86165275|gb|EAQ66543.1| cell division protein FtsJ [Marinomonas sp. MED121]
Length = 196
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + +Q+ GY +R+++KL++I + KL+K G V+DLG APG W Q+A + +G +
Sbjct: 7 DVYVKRSQQDGYRSRASYKLIEINDKDKLLKSGMKVVDLGAAPGGWSQIAGRLIG---DK 63
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ ++ V + D V +++ ++ L ++SDM P
Sbjct: 64 GRVVASDILEMAPLPGVTFVQGDFTEDDVYQEILKAIGDEHADL---------VISDMAP 114
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D S+ L A+D+A S VL+PGG+ ++K+ + +
Sbjct: 115 NMSGNSAVDQPQSMYLVELALDMA------------------SQVLRPGGNFLVKVFQGE 156
>gi|308189106|ref|YP_003933237.1| cell division protein [Pantoea vagans C9-1]
gi|308059616|gb|ADO11788.1| cell division protein [Pantoea vagans C9-1]
Length = 209
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ G +R+ FKL +IQ+ KL KPG +V+DLG APG W Q Q +G N
Sbjct: 20 DKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPGGWSQYVVQQIG---NK 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ V V L D R ++V ++ +Q V++SDM P
Sbjct: 77 GRIIACDILPMDPIVGVDFLQGDFREESVINALLERVGDQ---------KVQVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG D S+ L V+LAL +L PGG V+K+ +
Sbjct: 128 NMSGTPAVDIPRSMYL----VELAL--------------EMCRDILAPGGSFVVKVFQ 167
>gi|339320118|ref|YP_004679813.1| ribosomal RNA large subunit methyltransferase J [Candidatus
Midichloria mitochondrii IricVA]
gi|338226243|gb|AEI89127.1| ribosomal RNA large subunit methyltransferase J [Candidatus
Midichloria mitochondrii IricVA]
Length = 224
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 34/181 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A++ G+V+R+AFKL++I+++YKLI SS++D+G APG WLQV + N
Sbjct: 36 DPYVHLAKKQGFVSRAAFKLIEIEEKYKLINRSSSIIDIGAAPGGWLQVI---MSKKKNN 92
Query: 68 GSVVGIDVKKV--KVPSLHCDARVQTVSADVINLP-SNQVR-ALSPKQKGFSVILSDMCP 123
++G D+ K+ +P L + + + P +Q++ +LS K +ILSDM
Sbjct: 93 VCLIGTDLLKIALDIPGLIL------IQGNFLEAPIQDQIKTSLSKKP---DLILSDMAA 143
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G + D S EL A++ A +L GG+LV KL+ +
Sbjct: 144 ESCGDRSLDHLRSAELVNSAIEFA------------------QTILDKGGNLVFKLIRGK 185
Query: 184 D 184
+
Sbjct: 186 E 186
>gi|258544935|ref|ZP_05705169.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
hominis ATCC 15826]
gi|258519855|gb|EEV88714.1| ribosomal RNA large subunit methyltransferase J [Cardiobacterium
hominis ATCC 15826]
Length = 208
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 79/145 (54%), Gaps = 18/145 (12%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+ +KL++IQ++ +LI+PG V++LG APG W Q Q LG
Sbjct: 17 DIYVQKAQQEGYRSRAVYKLMEIQEKDRLIRPGMVVVELGAAPGGWSQYVAQCLG---GR 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTV-SADVINLPSNQVRALSPKQKGFSVILSDMC 122
G ++ +D+ + V + D R Q V A L + V ++++SDM
Sbjct: 74 GRMIALDILPMDALPDVTFILGDFREQAVLDALYAELGDSAV----------NLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLA 147
P+ SG+ + D A S+ L A+D A
Sbjct: 124 PNTSGVRSVDQAKSMYLVELALDFA 148
>gi|392422130|ref|YP_006458734.1| cell division protein FtsJ [Pseudomonas stutzeri CCUG 29243]
gi|452748390|ref|ZP_21948170.1| cell division protein FtsJ [Pseudomonas stutzeri NF13]
gi|390984318|gb|AFM34311.1| cell division protein FtsJ [Pseudomonas stutzeri CCUG 29243]
gi|452007796|gb|EME00049.1| cell division protein FtsJ [Pseudomonas stutzeri NF13]
Length = 206
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ G +RS++KL+++ ++ KLI+PG V+DLG APG W QVA +G
Sbjct: 17 DPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGWSQVAGGIVG---EK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V + D V ++++ L +Q +I+SD+ P
Sbjct: 74 GRVLATDILPMGGLDNVDFVQGDFTEDAVFQQILDM-------LDGRQP--DLIVSDIAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D A S+ L +D+ VLKPGG+ V+K+ + +
Sbjct: 125 NISGVAAADQAASMYLVELTLDMV------------------RQVLKPGGNYVVKVFQGE 166
>gi|300124014|emb|CBK25285.2| unnamed protein product [Blastocystis hominis]
Length = 840
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 8/141 (5%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY ARSAFKL+Q+ +Q+ + ++DL APG W QVA + + P+++
Sbjct: 10 DKWYALAKQQGYRARSAFKLIQLNRQFNFLSKAHVLIDLCAAPGGWCQVAAKQM-PIES- 67
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+++G+D+ +K +H V+T D+ L V K V+L D P+V G
Sbjct: 68 -TIIGVDLLPIK--PIH---NVKTFQEDITTLSCRDVIKRELHGKHADVVLHDGAPNVGG 121
Query: 128 ITTKDAALSVELGMRAVDLAL 148
+KDA L + ++ LA+
Sbjct: 122 GWSKDAFDQNSLVLHSLRLAV 142
>gi|88658179|ref|YP_507347.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
chaffeensis str. Arkansas]
gi|123493402|sp|Q2GGT6.1|RLME_EHRCR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|88599636|gb|ABD45105.1| ribosomal RNA large subunit methyltransferase J [Ehrlichia
chaffeensis str. Arkansas]
Length = 212
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 14 AQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGI 73
A++ GY +R+ FKL+++ ++ + K G VLDLG +PG W Q A Q + +N V +
Sbjct: 19 AKKQGYRSRATFKLIEMDSKFSIFKKGQYVLDLGSSPGGWSQFAAQRVSH-NNNNPVFAV 77
Query: 74 DVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPK--QKGFSVILSDMCPSVSGITT 130
D++ + +P+ V + D+I N + LS K K F VILSDM P G
Sbjct: 78 DIQNMDAIPN------VIFIQCDII----NDIELLSDKFHNKKFDVILSDMAPKACGNKQ 127
Query: 131 KDAALSVELGMRAVDLAL 148
D A + L ++D+ +
Sbjct: 128 VDHANIINLCEISLDIVV 145
>gi|403297460|ref|XP_003939580.1| PREDICTED: putative ribosomal RNA methyltransferase 1 [Saimiri
boliviensis boliviensis]
Length = 327
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ K++ L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDKEFHLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + K +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|359438109|ref|ZP_09228151.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20311]
gi|359444721|ref|ZP_09234491.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20439]
gi|358027209|dbj|GAA64400.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20311]
gi|358041440|dbj|GAA70740.1| ribosomal RNA large subunit methyltransferase E [Pseudoalteromonas
sp. BSi20439]
Length = 209
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL +IQ + KL++P +V+DLG APG+W Q + +G +
Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEIQNRDKLLRPAMTVVDLGAAPGSWSQYLAEKVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ + V L D R + V+N ++ K V+LSDM P
Sbjct: 77 GQVVACDILPMDSLAGVDFLQGDFREEA----VLNALLKRIDG-----KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D A S+ L A+D+ VLK G ++K+ + +
Sbjct: 128 NMSGNNSVDQAGSMYLVELALDMC------------------HQVLKKNGAFIVKVFQGE 169
>gi|261856557|ref|YP_003263840.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halothiobacillus
neapolitanus c2]
gi|261837026|gb|ACX96793.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Halothiobacillus
neapolitanus c2]
Length = 209
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 32/179 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F A+R GY +R+ +KL+++ ++ + +KPG V+DLG APG W Q A Q +G +
Sbjct: 17 DEFVLRAKREGYRSRAVYKLMELNERDRFLKPGQRVVDLGAAPGGWTQYAAQVVG---DR 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG---FSVILSDMCPS 124
G + +D+ +P H A + D S +V A G +++SDM P+
Sbjct: 74 GHIFALDL----LPMDHF-AHTTVIQGD---FSSEEVLAHLTALLGDAPVDLVISDMAPN 125
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+SG+ T D ++ L A+D +LKP G V K+ + +
Sbjct: 126 MSGVETVDIPRAMYLAELALDFC------------------HHMLKPEGAFVTKVFQGE 166
>gi|253997068|ref|YP_003049132.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera mobilis
JLW8]
gi|253983747|gb|ACT48605.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Methylotenera mobilis
JLW8]
Length = 206
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ+ GY AR+A+KL++I + K+IKPG +V+DLG APG+W QV Q L
Sbjct: 17 DPYVKLAQKDGYRARAAYKLMEIDDKDKIIKPGMTVVDLGSAPGSWSQVTVQR---LKGQ 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ +D+ ++ V + D R V+ L + L ++++DM P
Sbjct: 74 GKVIALDILEMTPISGVTFIQGDFREDA----VLKLLEQTLNNLQ-----VDLVIADMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
++SG+ D A + L +LAL + S D LKP G+ ++K+
Sbjct: 125 NISGVKDVDQAGAAYL----TELAL------------EFSKDW--LKPNGNFLVKVF 163
>gi|431926500|ref|YP_007239534.1| 23S rRNA methylase [Pseudomonas stutzeri RCH2]
gi|431824787|gb|AGA85904.1| 23S rRNA methylase [Pseudomonas stutzeri RCH2]
Length = 206
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ G +RS++KL+++ ++ KLI+PG V+DLG APG W QVA +G
Sbjct: 17 DPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGWSQVAGGIVG---EK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V + D V ++++ L +Q +I+SD+ P
Sbjct: 74 GKVLATDILPMGGLDNVDFVQGDFTEDAVFQQILDM-------LDGRQP--DLIVSDIAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D A S+ L +D+ VLKPGG+ V+K+ + +
Sbjct: 125 NISGVAAADQAASMYLVELTLDMV------------------RQVLKPGGNYVVKVFQGE 166
>gi|400288879|ref|ZP_10790911.1| 23S rRNA methyltransferase J [Psychrobacter sp. PAMC 21119]
Length = 210
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 16/146 (10%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY AR+A+KLL+I ++ LIK G +V+DLG APG+W QVA Q +G
Sbjct: 24 DHYVQKAQKDGYRARAAYKLLEINEKTNLIKKGMTVVDLGSAPGSWSQVAGQLVG---EQ 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V + D R A+V + +V + V+LSDM P
Sbjct: 81 GILIASDILAMDTLPDVTFIQGDFR----EAEVFDAIMAEV-----GDRQVDVVLSDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALG 149
+ +G + D + L AVD AL
Sbjct: 132 NTAGNSAIDQPRMMYLCELAVDFALA 157
>gi|386815648|ref|ZP_10102866.1| 23S rRNA Um-2552 2'-O-methyltransferase [Thiothrix nivea DSM 5205]
gi|386420224|gb|EIJ34059.1| 23S rRNA Um-2552 2'-O-methyltransferase [Thiothrix nivea DSM 5205]
Length = 206
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 78/144 (54%), Gaps = 16/144 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+ +KL +IQ++ ++++PG V+DLG APG W Q A Q +G
Sbjct: 17 DEYVKKAQQEGYRSRAVYKLKEIQEKDRILQPGMKVVDLGAAPGGWSQYATQVVG---QK 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G +V D+ + V + D R V A+++ L + L ++SDM P
Sbjct: 74 GRIVASDILPLDPLPFVEFVLGDFREDAVLAEILGLLGEEKADL---------VISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLA 147
++SG+ D ++ L A+D+A
Sbjct: 125 NMSGVDAVDQPRAIHLCELALDMA 148
>gi|13476893|ref|NP_108462.1| cell division protein FtsJ [Mesorhizobium loti MAFF303099]
gi|81776173|sp|Q983F8.1|RLME_RHILO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|14027654|dbj|BAB53923.1| cell division protein; FtsJ [Mesorhizobium loti MAFF303099]
Length = 265
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + ++ GY +R+A+KL++I ++ L+KPG V+DLG APG W QVA
Sbjct: 40 DPYVQRSKADGYRSRAAYKLIEIDDKHHLLKPGMKVIDLGAAPGGWCQVAAARTKSTAEN 99
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
VVGID ++ VP A V + + P AL V+LSDM +
Sbjct: 100 PHVVGIDYLEMDAVPG----APVLLMDFLDPDAPQKLAEALGGNP---DVVLSDMAAPTT 152
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D ++ L A D AL VLKPGGH + K +
Sbjct: 153 GHKRTDHIRTMHLCEVAADFAL------------------SVLKPGGHFLAKTFQ 189
>gi|307202661|gb|EFN81981.1| Putative ribosomal RNA methyltransferase CG11447 [Harpegnathos
saltator]
Length = 246
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 26/183 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL---GPL 64
D + +A++ Y RSAFKLL+IQ+++ + KPG V+D G APG+W +VA ++ G
Sbjct: 45 DPYVEKAKQERYRCRSAFKLLEIQERFNIFKPGQVVVDCGAAPGSWTEVAVNAINASGKK 104
Query: 65 DNG-GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
D G V +D K+P + V D + + + + + V+LSDM P
Sbjct: 105 DGSVGKVFAVD----KLPFYPVEGAVVLSGMDFTSASTQEELRKTMQDDKADVVLSDMAP 160
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
+ SG+ D + L A+ AL + KP G V+K+ + +
Sbjct: 161 NASGVREIDHDNIIMLAYSAMKFAL------------------QMNKPDGTFVVKIWDGR 202
Query: 184 DAQ 186
Q
Sbjct: 203 KTQ 205
>gi|339495068|ref|YP_004715361.1| cell division protein FtsJ [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|386021709|ref|YP_005939733.1| cell division protein FtsJ [Pseudomonas stutzeri DSM 4166]
gi|158514184|sp|A4VNP3.2|RLME_PSEU5 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|327481681|gb|AEA84991.1| cell division protein FtsJ [Pseudomonas stutzeri DSM 4166]
gi|338802440|gb|AEJ06272.1| cell division protein FtsJ [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 206
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ G +RS++KL+++ ++ KLI+PG V+DLG APG W QVA +G
Sbjct: 17 DPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGWSQVAGGIVG---EK 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V + D V ++++ L +Q +I+SD+ P
Sbjct: 74 GRVLATDILPMGGLDNVDFVQGDFTEDAVFQQILDM-------LDGRQP--DLIVSDIAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D A S+ L +D+ VLKPGG+ V+K+ + +
Sbjct: 125 NISGVAAADQAASMYLVELTLDMV------------------RQVLKPGGNYVVKVFQGE 166
>gi|46203098|ref|ZP_00208794.1| COG0293: 23S rRNA methylase [Magnetospirillum magnetotacticum MS-1]
Length = 251
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 13/134 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY +R+AFKL++I +++KL+KPG ++DLG APG W QVA + +G
Sbjct: 52 DPYVARAKREGYRSRAAFKLIEIDERFKLLKPGQRIVDLGAAPGGWSQVAAKIVG---EN 108
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCPSV 125
G +VGID+ +++ P A ++ D ++ P+ L K ++LSDM +
Sbjct: 109 GCIVGIDLLEIE-PM----AGATFITLDFLDESAPARLHELLGGKA---DLVLSDMAANT 160
Query: 126 SGITTKDAALSVEL 139
+G D ++ L
Sbjct: 161 TGHKKTDHLRTIGL 174
>gi|414166467|ref|ZP_11422700.1| ribosomal RNA large subunit methyltransferase E [Afipia
clevelandensis ATCC 49720]
gi|410894602|gb|EKS42390.1| ribosomal RNA large subunit methyltransferase E [Afipia
clevelandensis ATCC 49720]
Length = 233
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 30/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R G+ +R+A+KL ++ +++L+K G V+DLG APG W Q+A + +G L+
Sbjct: 33 DPYVAQAKRDGFRSRAAYKLQEMDDKHRLLKRGQVVVDLGAAPGGWSQIAAKRVGSLEGK 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVI--NLPSNQVRALSPKQKGFSVILSDMCPS 124
G VV ID+ + +VP V D + N P +++RA+ G V++SDM +
Sbjct: 93 GKVVAIDLLDMPEVPG------VTFAQMDFLDDNAP-DKLRAMIG--GGADVVMSDMAAN 143
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D +R + L AA A +L PGG + K+ +
Sbjct: 144 TTGHRKTDQ-------LRIIGLVESAAAFACE-----------ILNPGGTFLAKVFQ 182
>gi|407801039|ref|ZP_11147883.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
W11-5]
gi|407024476|gb|EKE36219.1| ribosomal RNA large subunit methyltransferase J [Alcanivorax sp.
W11-5]
Length = 207
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ GY +R++FKLL+I ++ +L +PG VLDLG APG W QVA + +G
Sbjct: 17 DQWVARAQAEGYRSRASFKLLEIHEKDRLFRPGMRVLDLGAAPGGWSQVAARLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ + V + D R ++V ++ AL K+ +++SDM P
Sbjct: 74 GQIIASDILAMDPIPDVTFIQGDFREESVFEQLLA-------ALGGKK--VDLVMSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG D ++ L A+D+A VL P G ++K+ + +
Sbjct: 125 NMSGTRAVDQPRAMYLAELALDMA------------------RRVLAPDGRFLVKVFQGE 166
>gi|169779173|ref|XP_001824051.1| AdoMet-dependent rRNA methyltransferase spb1 [Aspergillus oryzae
RIB40]
gi|238499797|ref|XP_002381133.1| rRNA methyltransferase Spb1, putative [Aspergillus flavus NRRL3357]
gi|83772790|dbj|BAE62918.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692886|gb|EED49232.1| rRNA methyltransferase Spb1, putative [Aspergillus flavus NRRL3357]
gi|391874235|gb|EIT83156.1| putative SAM-dependent rRNA methyltransferase SPB1 [Aspergillus
oryzae 3.042]
Length = 802
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ VLDL APG+W QVA + +
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVVLDLCAAPGSWCQVAAECM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P + ++G+D+ +K +P RV T +D+ K +L D
Sbjct: 67 PAQS--IIIGVDLAPIKPIP------RVITFQSDITTEKCRTTIRQHLKHWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 119 APNVGTAWVQDAFSQAELVLQSMKLA------------------TEFLVEGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|340721144|ref|XP_003398985.1| PREDICTED: putative rRNA methyltransferase 3-like isoform 1 [Bombus
terrestris]
Length = 852
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 30/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY+ A+ GY +R+AFKL+QI ++++ ++ +DL APG W+Q+A Q++ P+ +
Sbjct: 14 DKFYQLAKETGYRSRAAFKLIQINRKFEFLQKSRVCIDLCAAPGGWMQIARQNM-PVSS- 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS--VILSDMCPSV 125
V+G+D+ +K P C + V+ ++ D + ++S + K + V+L D P+V
Sbjct: 72 -VVIGVDLFPIK-PIPGCISLVEDITTDKCRV------SISRELKTWKADVVLHDGAPNV 123
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
DA + L + A+ +A + L+PGG + K+ S+D
Sbjct: 124 GKNWLHDAYQQIVLTLAALKMA------------------THFLRPGGWFITKVFRSKD 164
>gi|357474413|ref|XP_003607491.1| AdoMet-dependent rRNA methyltransferase spb1 [Medicago truncatula]
gi|355508546|gb|AES89688.1| AdoMet-dependent rRNA methyltransferase spb1 [Medicago truncatula]
Length = 868
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 45/188 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY +R+++KL+QI ++ ++ SVLDL APG W+QVA Q + P+D+
Sbjct: 13 DKYYYLAKEHGYCSRASWKLVQINSKFHFLESSRSVLDLCAAPGGWMQVAVQRV-PVDH- 70
Query: 68 GSVVGIDVKKVK-----------VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116
V+G+D+ +K + C +RV+ + + N RA F V
Sbjct: 71 -LVIGVDLTPIKPIRGAIAIQEDITRPECKSRVRKI------MNENGYRA-------FDV 116
Query: 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176
IL D P+V G ++A L + A+ LA + L P G V
Sbjct: 117 ILHDGSPNVGGAWAQEATSQNSLVIDAIKLA------------------TQFLAPKGTFV 158
Query: 177 IKLLESQD 184
K+ SQD
Sbjct: 159 TKVFRSQD 166
>gi|83718666|ref|YP_443289.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
gi|167621275|ref|ZP_02389906.1| FtsJ-like methyltransferase [Burkholderia thailandensis Bt4]
gi|257139525|ref|ZP_05587787.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
gi|123536418|sp|Q2SUW0.1|RLME_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|83652491|gb|ABC36554.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
Length = 220
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 44/189 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL------ 61
D + + AQR GY AR+A+KL +I +Q KLI+PG ++DLG APG+W Q A L
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGAAPGSWSQYARNKLAQGRRR 76
Query: 62 -----GPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112
G +D G+++ +D+ ++ V + D R +TV + + + +
Sbjct: 77 DAVREGGID--GTIIALDMLPMEPIADVHFIQGDFREETVLHQLEEVLAG---------R 125
Query: 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
+++SDM P++SG+ DAA +E DLAL A LKP
Sbjct: 126 SVDLVISDMAPNLSGVAVADAA-RIE---HVCDLALEFA--------------QNHLKPD 167
Query: 173 GHLVIKLLE 181
G L++K
Sbjct: 168 GALLVKCFH 176
>gi|290998754|ref|XP_002681945.1| rRNA (uridine-2'-O-)-methyltransferase [Naegleria gruberi]
gi|284095571|gb|EFC49201.1| rRNA (uridine-2'-O-)-methyltransferase [Naegleria gruberi]
Length = 823
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY +R+AFKL+Q+ K+Y + +LDL APG WLQVA + P+++
Sbjct: 13 DKYYHMAKEQGYRSRAAFKLVQLNKKYDFLGTARVMLDLCAAPGGWLQVA-KKFMPVNS- 70
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
++VG+D+ +K +P V T+ D+ + + + + V+L D P+V
Sbjct: 71 -TLVGVDLCPIKAIP------HVTTIQGDITTKKTMTMVKNVLRGQKCDVVLHDGAPNVG 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
KDA EL + A+ +A + LKP G + K+ S+D
Sbjct: 124 ANWLKDAFSQSELCLFALKMA------------------TEFLKPEGLFITKVFRSKD 163
>gi|291407431|ref|XP_002719910.1| PREDICTED: FtsJ homolog 1 [Oryctolagus cuniculus]
Length = 331
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ ++++L K + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + + + +++ D P V+
Sbjct: 69 GQVVAVDLQAMAPLPG------VTQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|433775817|ref|YP_007306284.1| 23S rRNA methylase [Mesorhizobium australicum WSM2073]
gi|433667832|gb|AGB46908.1| 23S rRNA methylase [Mesorhizobium australicum WSM2073]
Length = 265
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + ++ GY +R+A+KL++I ++ L+KPG V+DLG APG W QVA
Sbjct: 40 DPYVQRSKADGYRSRAAYKLIEIDDKHHLLKPGMKVIDLGAAPGGWCQVAAARTKSTAEN 99
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
V+GID ++ VP A V + + P AL V+LSDM +
Sbjct: 100 PHVIGIDYLEMDAVPG----APVLLMDFLDADAPQRLAEALGGDP---DVVLSDMAAPTT 152
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G D ++ L A D AL VLKPGGH + K +
Sbjct: 153 GHKRTDHIRTMHLCEVAADFAL------------------SVLKPGGHFLAKTFQ 189
>gi|296415586|ref|XP_002837467.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633339|emb|CAZ81658.1| unnamed protein product [Tuber melanosporum]
Length = 528
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 34/186 (18%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A++ GY AR+AFKL+Q+ K+Y ++ ++DL APG+W QVA + +
Sbjct: 8 GKGRLDKWYKLAKQKGYRARAAFKLIQLNKKYNFLEKSKVLIDLCAAPGSWCQVAAECM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRAL---SPKQKGFSVIL 118
P+++ +VG+D+ +K +P RV T +D+ +++ RA K +L
Sbjct: 67 PVNS--LIVGVDLAPIKAIP------RVITFQSDIT---TDKCRATLRGHLKTWKADTVL 115
Query: 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
D P+V +DA EL ++++ LA + L GG V K
Sbjct: 116 HDGAPNVGTAWVQDAFTQAELVLQSLKLA------------------TKFLIEGGTFVTK 157
Query: 179 LLESQD 184
+ S+D
Sbjct: 158 VFRSRD 163
>gi|146283283|ref|YP_001173436.1| cell division protein FtsJ [Pseudomonas stutzeri A1501]
gi|145571488|gb|ABP80594.1| cell division protein FtsJ [Pseudomonas stutzeri A1501]
Length = 211
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQ+ G +RS++KL+++ ++ KLI+PG V+DLG APG W QVA +G
Sbjct: 22 DPFVKRAQKDGLRSRSSYKLIELNEKDKLIRPGMLVMDLGSAPGGWSQVAGGIVG---EK 78
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V + D V ++++ L +Q +I+SD+ P
Sbjct: 79 GRVLATDILPMGGLDNVDFVQGDFTEDAVFQQILDM-------LDGRQP--DLIVSDIAP 129
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG+ D A S+ L +D+ VLKPGG+ V+K+ + +
Sbjct: 130 NISGVAAADQAASMYLVELTLDMV------------------RQVLKPGGNYVVKVFQGE 171
>gi|389806648|ref|ZP_10203695.1| 23S rRNA methyltransferase J [Rhodanobacter thiooxydans LCS2]
gi|388445300|gb|EIM01380.1| 23S rRNA methyltransferase J [Rhodanobacter thiooxydans LCS2]
Length = 235
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 38/180 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ G +R+ +KL ++ ++ +L+KPG +V+DLG APG+W Q+ LG +
Sbjct: 36 DEYVKKAQAEGLRSRAVYKLEELIERDRLLKPGINVVDLGAAPGSWSQLVRNRLG---DS 92
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV--ILSDM 121
G V +D+ ++ V L D R +TV + L + +G V +L DM
Sbjct: 93 GKVFALDILPMQSIAGVDFLRGDFREETV-----------LHELESRLEGLKVDLVLCDM 141
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P++SG+ D +++L A+D + LKPGG +IKL +
Sbjct: 142 APNMSGVALADQIRAMDLAELALDFS------------------RQWLKPGGSFLIKLFQ 183
>gi|119386697|ref|YP_917752.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Paracoccus denitrificans
PD1222]
gi|143460965|sp|A1B962.1|RLME_PARDP RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|119377292|gb|ABL72056.1| 23S rRNA Um-2552 2'-O-methyltransferase [Paracoccus denitrificans
PD1222]
Length = 256
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 33/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A+R GY R+A+K+L++ +Y+ + PG+ V+DLGCAPG W QVA + L +
Sbjct: 45 DPYVARAKREGYRGRAAYKILELDDKYRFLVPGARVVDLGCAPGGWCQVAVARVNALGDK 104
Query: 68 -----GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSD 120
G V+G+D+++V +P + D ++ ++ QV+A + V++SD
Sbjct: 105 SGKKVGRVLGVDLQEVDPIPG------AEIHQLDFLSEGADEQVKAWLGGRA--DVVMSD 156
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M + SG D +R V L A LA VL+PGG V K+L
Sbjct: 157 MAAASSGHKGTDH-------LRIVALVEAAAQLAFD-----------VLEPGGTFVAKVL 198
>gi|365890280|ref|ZP_09428840.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. STM 3809]
gi|365333900|emb|CCE01371.1| Ribosomal RNA large subunit (23S) methyltransferase [Bradyrhizobium
sp. STM 3809]
Length = 231
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+ +KL++I ++ L+KPG +V+DLG APG W Q+A + +G
Sbjct: 33 DPYVAQAKRDGYRSRATYKLIEIDDKFHLLKPGMTVVDLGAAPGGWSQIAARRVGAEAGK 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADV-INLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV ID+ ++ ++P V D + ++RA+ + V++SDM +
Sbjct: 93 GKVVAIDLLEMGEIPG------VTFAQLDFHAHEAPEKLRAMMGGRA--DVVMSDMAANT 144
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+G D +R V L A A VLKPGG + K +S
Sbjct: 145 TGHRKTDQ-------LRIVGLVELAAHFAGE-----------VLKPGGSFLAKTFQS 183
>gi|194227880|ref|XP_001493665.2| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Equus
caballus]
Length = 301
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ ++++L + + +DL APG+W QV Q +G
Sbjct: 10 DVYYRLAKENGWRARSAFKLLQLDEEFQLFQGVTRAVDLCAAPGSWSQVLSQKIGG-QGS 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D++ + +P V + D+ L + Q + +++ D P V+
Sbjct: 69 GHVVAVDLQAMAPLPG------VLQIQGDITQLSTAQEIIRHFEGCPADLVVCDGAPDVT 122
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G+ D + +L + A+++A + VLKPGG V K+ +D
Sbjct: 123 GLHDVDEYMQAQLLLAALNIA------------------THVLKPGGCFVAKIFRGRD 162
>gi|46580665|ref|YP_011473.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
vulgaris str. Hildenborough]
gi|120602033|ref|YP_966433.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
DP4]
gi|387153949|ref|YP_005702885.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
RCH1]
gi|81566318|sp|Q729T9.1|RLME_DESVH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|158513904|sp|A1VC40.1|RLME_DESVV RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|46450084|gb|AAS96733.1| ribosomal RNA large subunit methyltransferase J [Desulfovibrio
vulgaris str. Hildenborough]
gi|120562262|gb|ABM28006.1| 23S rRNA Um-2552 2'-O-methyltransferase [Desulfovibrio vulgaris
DP4]
gi|311234393|gb|ADP87247.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfovibrio vulgaris
RCH1]
Length = 204
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 25/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A++ Y ARS +KL +I ++K+ + G VLDLG APG+W A + +GP
Sbjct: 6 DHYFLKAKQENYPARSVYKLKEIDNRFKIFRQGMKVLDLGAAPGSWSLGAAEKVGP---R 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ D+++ +Q + N + ++P F V++SDM P +G
Sbjct: 63 GRVLACDLQETDTVFPDNVTFMQENVFERSEAFENLLDEIAP----FDVVISDMAPRTTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A S+EL + A+ +A D ++K GG V+K+ D Q
Sbjct: 119 TRFTDQARSLELCLEALAVA-----------------DRCLIK-GGSFVVKIFMGPDVQ 159
>gi|407928130|gb|EKG21003.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Macrophomina phaseolina
MS6]
Length = 268
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 42/175 (24%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EA+ G +R+AFKLL++ ++Y+L +PG++V+DLG APG+W QVA P G
Sbjct: 82 DRYAKEAKVRGLKSRAAFKLLEMNQRYRLFRPGATVVDLGYAPGSWSQVAIDRTQP---G 138
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVS 126
G V+GIDV + P V T+ + ++ +VRA+ + S
Sbjct: 139 GRVIGIDVIPAQPPRG-----VSTIQGNFLSEAVQAEVRAMM---------------NTS 178
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ +D A S++L A+ A L+ GG+ V K +
Sbjct: 179 GMAFRDHAGSMDLCHAALTFAF------------------DTLRTGGNFVCKFYQ 215
>gi|337269434|ref|YP_004613489.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium
opportunistum WSM2075]
gi|336029744|gb|AEH89395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Mesorhizobium
opportunistum WSM2075]
Length = 236
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 77/178 (43%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + ++ GY +R+A+KL++I ++ L+KPG V+DLG APG W QVA
Sbjct: 40 DPYVQRSKADGYRSRAAYKLIEIDDKHHLLKPGMKVIDLGAAPGGWCQVAAARTKSTAEN 99
Query: 68 GSVVGIDVKKVKVPSLHCDA--RVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
V+GID L DA + D +N P AL V+LSDM
Sbjct: 100 PHVIGIDY-------LEMDAVPGAPVLLMDFLNPAAPQKLAEALGGDP---DVVLSDMAA 149
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VLKPGGH + K +
Sbjct: 150 PTTGHKRTDHIRTMHLCEVAADFAL------------------SVLKPGGHFLAKTFQ 189
>gi|344301534|gb|EGW31846.1| hypothetical protein SPAPADRAFT_140790 [Spathaspora passalidarum
NRRL Y-27907]
Length = 295
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 29/179 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ +++ L + V+DL APG+W QV + L
Sbjct: 10 DLYYRRAKEEGWRARSAFKLLQLNQEFNLFDGITRVVDLCAAPGSWSQVLSRELQ--GKN 67
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ--VRALSPKQKGFSVILSDMCPSV 125
+V +D++ P D V T+ AD+ + + Q + + +Q F + SD P V
Sbjct: 68 AKIVAVDLQ----PMTPIDG-VTTIQADITHPNTLQTILDIFAGEQADF--VCSDGAPDV 120
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+G+ D + +L + A+ L + +LKPGG V K+ +D
Sbjct: 121 TGLHDLDEYIQAQLILSALQLT------------------TCLLKPGGTFVAKIFRGRD 161
>gi|355733549|gb|AES11072.1| putative ribosomal RNA methyltransferase 2-like protein [Mustela
putorius furo]
Length = 237
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 84/177 (47%), Gaps = 29/177 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D F + A+ Y RSAFKLL++ ++K+++PG VLD G APGAW QVA Q +
Sbjct: 38 DPFVKAAKVESYRCRSAFKLLEVDDRHKILRPGLRVLDCGAAPGAWSQVAVQRVNAAGTD 97
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
P G V+G+D+ V + ADV + + Q +R L P + VILSDM
Sbjct: 98 PSAPVGFVLGVDLLHV----FPLEGATFLCPADVTDPRTLQRIRELLPGGRA-DVILSDM 152
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
P+ +GI + D + L +DL VL+PGG + K
Sbjct: 153 APNATGIRSLDHDRLIGLCSSLLDLT------------------PDVLEPGGTFLCK 191
>gi|254491856|ref|ZP_05105035.1| ribosomal RNA large subunit methyltransferase J [Methylophaga
thiooxidans DMS010]
gi|224463334|gb|EEF79604.1| ribosomal RNA large subunit methyltransferase J [Methylophaga
thiooxydans DMS010]
Length = 205
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 83/145 (57%), Gaps = 16/145 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G+ +R+ FKL +I ++ KL++PG SV+DLG APG W A + +G +
Sbjct: 17 DQYVKKAQKEGHRSRATFKLDEIDQKDKLLRPGMSVVDLGAAPGGWSDYAFRKVG---DS 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G+VV +D+ + V + D R V D +N + L+ ++ ++LSDM P
Sbjct: 74 GTVVALDILPMTPLTGVHFIEGDFREDEV-LDELN------KVLNGRE--IDLVLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLAL 148
++SG+ + D S+ L A+D A+
Sbjct: 125 NMSGVGSIDQPASMYLVELALDFAV 149
>gi|55250314|gb|AAH85449.1| FtsJ homolog 1 (E. coli) [Danio rerio]
gi|182890610|gb|AAI64849.1| Ftsj1 protein [Danio rerio]
Length = 323
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 27/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKLLQ+ +++KL + S +DL APG+W QV + L D
Sbjct: 10 DIYYRLAKEEGWRARSAFKLLQLDEEFKLFRGVSRAVDLCAAPGSWSQVLSRKLRGKDKS 69
Query: 68 GSV--VGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
V V +D++ + +P V + D+ + + + + + +++ D P
Sbjct: 70 EEVKIVAVDLQAMAPLPG------VTQIQGDITKISTAEEIIRHFEGESADLVVCDGAPD 123
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
V+G+ D + +L + A+++ + VLKPGG+ V K+ +D
Sbjct: 124 VTGLHDVDEYIQAQLLLAALNIT------------------THVLKPGGNFVAKIFRGKD 165
>gi|343472393|emb|CCD15434.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 904
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKL+Q+ ++Y + ++DL APG+W QVA + + P+ G
Sbjct: 14 DAYYRLAKDQGFRARSAFKLVQLNRKYDFLAKCRVLVDLCAAPGSWCQVAAKHM-PV--G 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VG+D+ V + + V+T D+ + + ++ K++ ++ D P+V G
Sbjct: 71 SKIVGVDL--VPIAPIR---GVKTFVGDITDEKTRKIIMTYLKREPVDCVIHDGAPNVGG 125
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++D L + A +A S +L+ GG V K+ SQD
Sbjct: 126 VWSRDLFEQNSLVLHAAKMA------------------SKLLRLGGWFVTKVFRSQD 164
>gi|342180038|emb|CCC89514.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 929
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ G+ ARSAFKL+Q+ ++Y + ++DL APG+W QVA + + P+ G
Sbjct: 14 DAYYRLAKDQGFRARSAFKLVQLNRKYDFLAKCRVLVDLCAAPGSWCQVAAKHM-PV--G 70
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
+VG+D+ V + + V+T D+ + + ++ K++ ++ D P+V G
Sbjct: 71 SKIVGVDL--VPIAPIR---GVKTFVGDITDEKTRKIIMTYLKREPVDCVIHDGAPNVGG 125
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ ++D L + A +A S +L+ GG V K+ SQD
Sbjct: 126 VWSRDLFEQNSLVLHAAKMA------------------SKLLRLGGWFVTKVFRSQD 164
>gi|17554650|ref|NP_497843.1| Protein R74.7 [Caenorhabditis elegans]
gi|9910861|sp|Q22031.3|RRMJ1_CAEEL RecName: Full=Putative ribosomal RNA methyltransferase R74.7;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|5824584|emb|CAA85279.2| Protein R74.7 [Caenorhabditis elegans]
Length = 337
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 27/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ + ARSAFKL+QI +++++K +DL APG+W QV + L D
Sbjct: 10 DIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRLYEEDQE 69
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
+V ID++ + +P V + D+ ++ + NQV +K +++ D P V
Sbjct: 70 AKIVAIDLQPMAPIPG------VIQLQGDITSVDTANQVIKHFSGEKS-DIVICDGAPDV 122
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
+GI + D + EL + A ++ S VLK GG+ + K+ S+++
Sbjct: 123 TGIHSLDEFMQAELILAAFNIT------------------SHVLKEGGNFLAKIFRSRNS 164
>gi|163797468|ref|ZP_02191419.1| 23S rRNA methylase [alpha proteobacterium BAL199]
gi|159177217|gb|EDP61776.1| 23S rRNA methylase [alpha proteobacterium BAL199]
Length = 251
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F E++RLGY +R+AFKL+Q+ +++ ++PG+ V+DLG APG W Q++ +G
Sbjct: 56 DPFVAESKRLGYRSRAAFKLIQLNERFNFLRPGARVVDLGAAPGGWTQISVDRVGAPGR- 114
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VVG+D+ V+ A + AD + + Q++A + V+LSDM +
Sbjct: 115 GLVVGLDILPVE-----PIAGATLIEADFMADDAPQQIKAATGGL--VDVVLSDMAAQTT 167
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D V L A + AL
Sbjct: 168 GHPQTDHLRIVGLCEAAFEFAL 189
>gi|350544011|ref|ZP_08913677.1| Cell division protein FtsJ / Ribosomal RNAlarge subunit
methyltransferase E [Candidatus Burkholderia kirkii
UZHbot1]
gi|350528200|emb|CCD36234.1| Cell division protein FtsJ / Ribosomal RNAlarge subunit
methyltransferase E [Candidatus Burkholderia kirkii
UZHbot1]
Length = 239
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 44/189 (23%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVA---------- 57
D + + A+R GY AR+A+KL +I +Q KLIKPG ++DLG PG+W Q A
Sbjct: 36 DPYVKMARREGYRARAAYKLKEIDEQDKLIKPGMVIVDLGSTPGSWSQYARNKLTQSAKR 95
Query: 58 -CQSLGPLDNGGSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112
Q G +D G ++ +D+ ++ V + D R V A + + Q
Sbjct: 96 DAQREGGID--GKIIALDILPMETIADVTFIQGDFREDDVLAKLDEIVGEQ--------- 144
Query: 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172
+++SDM P++SG+ + DAA L DLAL A LKP
Sbjct: 145 QIDLVISDMAPNLSGVASADAARIEHL----CDLALEFA--------------QNHLKPE 186
Query: 173 GHLVIKLLE 181
G L++K L
Sbjct: 187 GALLVKCLR 195
>gi|90082607|dbj|BAE90485.1| unnamed protein product [Macaca fascicularis]
Length = 540
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 28/185 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G D FY A+ GY +RSAFKL+Q+ ++++ ++ ++LDL APG WLQVA + +
Sbjct: 8 GKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P+ +VG+D+ +K +P+ V T+ D+ Q K V+L D
Sbjct: 67 PV--SSLIVGVDLVPIKPLPN------VVTLQEDITTERCRQALRKELKTWKVDVVLDDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V DA L + A+ LA L GG + K+
Sbjct: 119 APNVGASWVHDAYSQAHLTLMALRLA------------------CDFLARGGCFITKVFR 160
Query: 182 SQDAQ 186
S+D Q
Sbjct: 161 SRDYQ 165
>gi|170697951|ref|ZP_02889034.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
IOP40-10]
gi|170137117|gb|EDT05362.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
IOP40-10]
Length = 220
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 40/184 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVA---------- 57
D + + AQR GY AR+A+KL +I +Q KLI+PG ++DLG PG+W Q A
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNKLAQGKKR 76
Query: 58 -CQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116
Q G +D G+++ +D+ +P + A V + D + +R L +G +V
Sbjct: 77 DTQREGGID--GTIIALDL----LP-MEPIADVHFIQGDFRE--DDVLRQLEEVLEGRAV 127
Query: 117 --ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
++SDM P++SG+ + DAA L DLAL A LKP G
Sbjct: 128 DLVISDMAPNLSGVASADAARIEHL----CDLALEFA--------------QNHLKPDGA 169
Query: 175 LVIK 178
L++K
Sbjct: 170 LLVK 173
>gi|167044324|gb|ABZ09003.1| putative FtsJ-like methyltransferase [uncultured marine
crenarchaeote HF4000_APKG6B14]
Length = 197
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 23/138 (16%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
D + + A GY +RS++KL ++ K Y++I G VLDLGCAPG W QVA Q G N
Sbjct: 8 KDHYRKLASVEGYRSRSSYKLKELHKSYRIIGVGHYVLDLGCAPGGWTQVAVQLAG---N 64
Query: 67 GGSVVGIDVKKV-KVPSLH------CDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
G V+G+D V ++P + CD +V+ ++++ +V +V++
Sbjct: 65 KGKVMGVDTSYVEEIPGAYMLKSDICDG---SVTKEILSFFGKKV----------NVVIC 111
Query: 120 DMCPSVSGITTKDAALSV 137
D+ P V+G + D + +
Sbjct: 112 DLSPQVTGNWSVDHSTQI 129
>gi|378768806|ref|YP_005197280.1| ribosomal RNA large subunit methyltransferase J [Pantoea ananatis
LMG 5342]
gi|386018170|ref|YP_005936472.1| ribosomal RNA large subunit methyltransferase J RrmJ [Pantoea
ananatis AJ13355]
gi|327396254|dbj|BAK13676.1| ribosomal RNA large subunit methyltransferase J RrmJ [Pantoea
ananatis AJ13355]
gi|365188293|emb|CCF11243.1| ribosomal RNA large subunit methyltransferase J [Pantoea ananatis
LMG 5342]
Length = 209
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 38/180 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ G +R+ FKL +IQ+ KL KPG +V+DLG APG W Q Q +G +
Sbjct: 20 DKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPGGWSQYVVQQIG---SK 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPK--QKGFSVILSDM 121
G V+ D+ V V L D R ++V ++AL + ++ V++SDM
Sbjct: 77 GRVIACDILPMDPIVGVDFLQGDFREESV-----------IKALLERVGEQKVQVVMSDM 125
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P++SG D S+ L V+LAL D D +L PGG V+K+ +
Sbjct: 126 APNMSGTPAVDIPRSMYL----VELAL------------DMCRD--ILAPGGSFVVKVFQ 167
>gi|417404920|gb|JAA49193.1| Putative sam-dependent rrna methyltransferase spb1 [Desmodus
rotundus]
Length = 840
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY A+ GY +RSAFKL+Q+ ++++ ++ ++LDL APG WLQVA + + P+ +
Sbjct: 13 DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM-PVSS- 70
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
+VG+D+ +K +P+ V T+ D+ Q K V+L+D P+V
Sbjct: 71 -LIVGVDLVPIKPLPN------VVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVG 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
DA L + A+ LA L GG+ + K+ S+D Q
Sbjct: 124 ASWVHDAYSQAHLTLMALRLA------------------CDFLARGGYFITKVFRSRDYQ 165
>gi|340779414|ref|ZP_08699357.1| ribosomal RNA large subunit 23S methyltransferase RrmJ/FtsJ
[Acetobacter aceti NBRC 14818]
Length = 218
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + A + G+ +R+AFKL++I ++ LIKPG V+DLG APG W QVA +
Sbjct: 18 DPYVAAAHKQGWRSRAAFKLIEIDDRFHLIKPGQRVVDLGAAPGGWTQVAVKR-----GA 72
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
V+G+D+ L D A + + D + LP + L K ++LSDM P
Sbjct: 73 SHVIGVDL-------LPVDPVAGAEIIEGDFTDPELPDRLIEMLGGKA---DLVLSDMAP 122
Query: 124 SVSGITTKDAALSVELGMRAVDLAL 148
+ +G D + L A+D A
Sbjct: 123 NTTGHAPTDHMRIIGLAEGALDFAF 147
>gi|304391240|ref|ZP_07373184.1| ribosomal RNA large subunit methyltransferase J [Ahrensia sp.
R2A130]
gi|303296596|gb|EFL90952.1| ribosomal RNA large subunit methyltransferase J [Ahrensia sp.
R2A130]
Length = 246
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 25/180 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A+ GY +R+A+KL+++ +Y ++KPG V+DLG APG W QVA + +G +
Sbjct: 54 DPYVQKARAEGYASRAAYKLIEMNDRYNILKPGYRVVDLGAAPGGWCQVAAREVGSSIDD 113
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
VVGID + VP + D ++ + + + +++SDM
Sbjct: 114 IRVVGIDYLDMDPVPG------ATIIKKDFLDDDAPDMLREALGGHPIDLVMSDMAAPTI 167
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
G D ++ L A D AL V+KPGGH + K + Q
Sbjct: 168 GHRKTDHMRTMALVEVAFDFAL------------------EVVKPGGHFLTKTFQGGTEQ 209
>gi|115465501|ref|NP_001056350.1| Os05g0567400 [Oryza sativa Japonica Group]
gi|113579901|dbj|BAF18264.1| Os05g0567400 [Oryza sativa Japonica Group]
Length = 819
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/182 (32%), Positives = 83/182 (45%), Gaps = 33/182 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY A+ GY +R+AFKLLQ+ +++ + +VLDL APG W+QVA P+ G
Sbjct: 11 DKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNH-APV--G 67
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINL-PSNQVRALSPKQKGFSVILSDMC 122
VVG+D+ ++ SL D A V L SN V A F V+L D
Sbjct: 68 AFVVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVAA-------FDVVLHDGS 120
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+V G ++A L + AV LA + L P G + K+ S
Sbjct: 121 PNVGGAWAQEATAQSSLVIDAVRLA------------------TMFLAPKGAFITKVFRS 162
Query: 183 QD 184
QD
Sbjct: 163 QD 164
>gi|395845562|ref|XP_003795499.1| PREDICTED: putative ribosomal RNA methyltransferase 2 [Otolemur
garnettii]
Length = 246
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D F + A+ Y RSAFKLL++ +++++++PG VLD G APGAW QVA Q +
Sbjct: 41 DSFVKAAKVESYRCRSAFKLLEVNEKHQILRPGLRVLDCGAAPGAWSQVAVQRVNSAGTD 100
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ-VRALSPKQKGFSVILSDM 121
P G V+G+D+ + + ADV + + Q V L P + VILSDM
Sbjct: 101 PSSPIGFVLGVDLLHI----FPLEGATFLCPADVTDPRTFQRVLELLPGGRA-DVILSDM 155
Query: 122 CPSVSGITTKDAALSVELGMRAVDLA 147
P+ +GI D + L + +D+A
Sbjct: 156 APNATGIRDLDHDRLISLCLSLLDMA 181
>gi|168007294|ref|XP_001756343.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692382|gb|EDQ78739.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 844
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 35/189 (18%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D FY A+ G+ +R++FKL+Q+ ++++ + SVLDL APG W+QV +++
Sbjct: 7 TGKGRLDRFYYLAKEQGFRSRASFKLVQLDRKFQFLSSARSVLDLCAAPGGWMQVCSKNM 66
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRAL------SPKQKGFS 115
P+ G ++GID+ ++ P C T+ D+ + Q RA K
Sbjct: 67 -PV--GSLIIGIDLVPIR-PIRGC----VTLQEDIT---TPQCRAAIKKVLKEKKHDMVQ 115
Query: 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175
V+L D P+V G + +++ L + ++ LA + VL PGG
Sbjct: 116 VVLHDGSPNVGGAWSSESSAQTALVLDSLKLA------------------TDVLCPGGTF 157
Query: 176 VIKLLESQD 184
V K+ SQD
Sbjct: 158 VTKIFRSQD 166
>gi|375257548|ref|YP_005016718.1| 23S rRNA methyltransferase J [Klebsiella oxytoca KCTC 1686]
gi|402840268|ref|ZP_10888737.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp.
OBRC7]
gi|420367521|ref|ZP_14868302.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
1235-66]
gi|421729353|ref|ZP_16168490.1| 23S rRNA methyltransferase J [Klebsiella oxytoca M5al]
gi|423105056|ref|ZP_17092758.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5242]
gi|423110543|ref|ZP_17098238.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5243]
gi|423116542|ref|ZP_17104233.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5245]
gi|423122304|ref|ZP_17109988.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5246]
gi|423125961|ref|ZP_17113640.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5250]
gi|365907026|gb|AEX02479.1| 23S rRNA methyltransferase J [Klebsiella oxytoca KCTC 1686]
gi|376378108|gb|EHS90872.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5245]
gi|376379108|gb|EHS91863.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5243]
gi|376381822|gb|EHS94558.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5242]
gi|376392630|gb|EHT05293.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5246]
gi|376398062|gb|EHT10690.1| ribosomal RNA large subunit methyltransferase E [Klebsiella oxytoca
10-5250]
gi|391323076|gb|EIQ79743.1| ribosomal RNA large subunit methyltransferase J [Shigella flexneri
1235-66]
gi|402287218|gb|EJU35678.1| ribosomal RNA large subunit methyltransferase J [Klebsiella sp.
OBRC7]
gi|410369895|gb|EKP24639.1| 23S rRNA methyltransferase J [Klebsiella oxytoca M5al]
Length = 209
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G +R+ FKL +IQ+ K+ KPG +++DLG APG W Q A +G N
Sbjct: 20 DKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTIVDLGAAPGGWSQYAVTQIG---NS 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ V V L D R + V ++ + V++SDM P
Sbjct: 77 GRIIACDLLPMDPIVGVDFLQGDFRDELVLKALLERVGDS---------KVQVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++ G A+ + M V+LALG A VL PGG V+K+ + +
Sbjct: 128 NMCGT----PAVDIPRAMYLVELALGMA--------------RDVLAPGGSFVVKVFQGE 169
>gi|291616003|ref|YP_003518745.1| RrmJ [Pantoea ananatis LMG 20103]
gi|386080912|ref|YP_005994437.1| ribosomal RNA large subunit methyltransferase J RrmJ [Pantoea
ananatis PA13]
gi|291151033|gb|ADD75617.1| RrmJ [Pantoea ananatis LMG 20103]
gi|354990093|gb|AER34217.1| ribosomal RNA large subunit methyltransferase J RrmJ [Pantoea
ananatis PA13]
Length = 223
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 89/180 (49%), Gaps = 38/180 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ G +R+ FKL +IQ+ KL KPG +V+DLG APG W Q Q +G +
Sbjct: 34 DKYVLQAQKKGLRSRAWFKLDEIQQGDKLFKPGMTVVDLGAAPGGWSQYVVQQIG---SK 90
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPK--QKGFSVILSDM 121
G V+ D+ V V L D R ++V ++AL + ++ V++SDM
Sbjct: 91 GRVIACDILPMDPIVGVDFLQGDFREESV-----------IKALLERVGEQKVQVVMSDM 139
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P++SG D S+ L V+LAL D D +L PGG V+K+ +
Sbjct: 140 APNMSGTPAVDIPRSMYL----VELAL------------DMCRD--ILAPGGSFVVKVFQ 181
>gi|331007339|ref|ZP_08330535.1| Ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium IMCC1989]
gi|330418855|gb|EGG93325.1| Ribosomal RNA large subunit methyltransferase J [gamma
proteobacterium IMCC1989]
Length = 206
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 83/143 (58%), Gaps = 12/143 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++Q+ GY +R+ +KLL++ K+ KLIK +V+DLG APG W QVA + +G DN
Sbjct: 17 DKYVQQSQQDGYRSRACYKLLELNKKDKLIKKNMTVIDLGSAPGGWSQVAAELVG--DN- 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS--VILSDMCPSV 125
G+V+ D+ +P + A VQ V D + + +GF +++SDM P++
Sbjct: 74 GTVIASDI----LP-MDGIAGVQFVQGDFTE--DSVFEEIMNAMQGFKADLVISDMAPNM 126
Query: 126 SGITTKDAALSVELGMRAVDLAL 148
SG+ D ++ L A+D+A+
Sbjct: 127 SGMAEVDQPRAMYLVELALDMAV 149
>gi|320037455|gb|EFW19392.1| rRNA methyltransferase Spb1 [Coccidioides posadasii str. Silveira]
Length = 712
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +Y+ A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA + +
Sbjct: 8 GKGRLDKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECM- 66
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
P ++ +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 67 PTES--LIVGVDLAPIKPIP------RVITFQSDITTDKCRATIRQHLKTWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 119 APNVGTAWVQDAFSQAELALQSLKLA------------------TEFLVAGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|225710072|gb|ACO10882.1| ribosomal RNA methyltransferase CG11447 [Caligus rogercresseyi]
Length = 201
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 11/145 (7%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A D + ++A+ GY ARSA+KLL++ + K+++P +V++ G APGAW QV + +
Sbjct: 57 AKDIYVKKARSEGYRARSAYKLLEMDDKLKILRPNMNVMECGGAPGAWTQVLTERV---- 112
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSP--KQKGFSVILSDMCP 123
+ G+++ D+ + R + PS Q LS K GF ++LSDM P
Sbjct: 113 SSGTIISCDLLDYEPV-----GRAIILPNSDFTSPSTQDTILSHLGKSSGFDLVLSDMAP 167
Query: 124 SVSGITTKDAALSVELGMRAVDLAL 148
+ SG+ + + L A AL
Sbjct: 168 NASGMAELNHGQILNLSYEATKFAL 192
>gi|90420028|ref|ZP_01227937.1| ribosomal RNA large subunit methyltransferase J [Aurantimonas
manganoxydans SI85-9A1]
gi|90336069|gb|EAS49817.1| ribosomal RNA large subunit methyltransferase J [Aurantimonas
manganoxydans SI85-9A1]
Length = 255
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 28/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + R A+ GY +R+A+KL+++ +YKL+KPG ++DLG APG W QVA G
Sbjct: 35 DPYVRRAKADGYRSRAAYKLIEMDDRYKLLKPGHRIVDLGAAPGGWCQVAVDRTGSTAAD 94
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCPSV 125
VVGID V+ P A + D ++ P + L + ++LSD+
Sbjct: 95 VRVVGIDYLTVE-PV----AGATILLMDFLDDAAPDKLMETLG---EAPDIVLSDLAAPT 146
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D A+ LKPGGH + K +
Sbjct: 147 TGHRPTDHIRTMHLCDVAADFAI------------------RTLKPGGHFLAKTFQ 184
>gi|270158120|ref|ZP_06186777.1| putative ribosomal RNA large subunit methyltransferase J
[Legionella longbeachae D-4968]
gi|289163615|ref|YP_003453753.1| ribosomal RNA large subunit methyltransferase (cell division
protein FtsJ) [Legionella longbeachae NSW150]
gi|269990145|gb|EEZ96399.1| putative ribosomal RNA large subunit methyltransferase J
[Legionella longbeachae D-4968]
gi|288856788|emb|CBJ10599.1| Ribosomal RNA large subunit methyltransferase (Cell division
protein FtsJ) [Legionella longbeachae NSW150]
Length = 206
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 36/179 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ GY +R+ +KL ++ + L+KPG +V+DLG APG W Q + L
Sbjct: 17 DVYVKKAQAEGYRSRAVYKLKEVDDKESLLKPGMTVVDLGAAPGGWTQYVSEQ---LKGC 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINL-PSNQVRALSPKQKGFSVILSDMC 122
G ++ +D+ + V + D R + V +INL P V ++LSDM
Sbjct: 74 GRIIALDILPMDALPDVDFILGDFREEEVLQKLINLIPERSV----------DLLLSDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P++SG A+ + M V+LA A +LKPGG ++IK+
Sbjct: 124 PNMSG----SKAIDIPRAMYLVELAFDFA--------------EKMLKPGGAMLIKVFH 164
>gi|392554110|ref|ZP_10301247.1| 23S rRNA methyltransferase J [Pseudoalteromonas undina NCIMB 2128]
Length = 209
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL +IQ + KL++P +V+DLG APG+W Q + +G +
Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEIQNRDKLLRPAMTVVDLGAAPGSWSQYLAEKVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV D+ + V L D R + V ++ K V+LSDM P
Sbjct: 77 GQVVACDILPMDSLAGVDFLQGDFREEAVLDALLKRIDG---------KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D A S+ L A+D+ VLK G ++K+ + +
Sbjct: 128 NMSGNNSVDQAGSMYLVELALDMC------------------HQVLKKNGAFIVKVFQGE 169
>gi|225557686|gb|EEH05971.1| cell division cycle protein [Ajellomyces capsulatus G186AR]
Length = 337
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A D + REA G +R+AFKLLQI +YK+ KPG SV+DLG APG+W QVA P
Sbjct: 45 AKDKYSREAGVKGLKSRAAFKLLQINDRYKIFKPGQSVVDLGYAPGSWSQVAVDLTQP-- 102
Query: 66 NGGSVVGIDV 75
G VVG+D+
Sbjct: 103 -NGRVVGVDI 111
>gi|334129579|ref|ZP_08503383.1| Ribosomal RNA large subunit methyltransferase J [Methyloversatilis
universalis FAM5]
gi|333445264|gb|EGK73206.1| Ribosomal RNA large subunit methyltransferase J [Methyloversatilis
universalis FAM5]
Length = 210
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 16/144 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ G+ +R+AFKL+QI + +L+ PG V+DLG PG W QV+ + +G
Sbjct: 17 DPYVKQAQAQGFRSRAAFKLMQIDDKDRLLAPGKVVVDLGSTPGGWSQVSSKKVGA---S 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G VV ID+ ++ V + D R +++ S + + ++LSDM P
Sbjct: 74 GKVVAIDLLPMEPVHGVRFILGDFREDGPLGELVE---------SLEGRRVDLVLSDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLA 147
++SGI D A S+ L A++ A
Sbjct: 125 NLSGIAVTDQARSIHLLELALEFA 148
>gi|219684632|ref|ZP_03539575.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
PBr]
gi|219671994|gb|EED29048.1| ribosomal RNA large subunit methyltransferase J [Borrelia garinii
PBr]
Length = 192
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 78/142 (54%), Gaps = 13/142 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A+R GY+ARS +KL++I +++ L G +VLD+G +PG++ Q A + L
Sbjct: 6 DEYFQKAKREGYLARSVYKLIEINEKFSLFSSG-NVLDIGASPGSFSQYAYKKLKR---- 60
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +V +D+ + SL + D+ + + ++ P +S+++SD+ P +
Sbjct: 61 GVLVSVDINDI---SLRYVDNFYFIKGDIFSDDTAYKINKFGP----YSLVISDVAPKTT 113
Query: 127 GITTKDAALSVELGMRAVDLAL 148
G D + S L MR +DL+
Sbjct: 114 GNRLVDTSNSFNLSMRIIDLSF 135
>gi|56696734|ref|YP_167095.1| ribosomal RNA large subunit methyltransferase J [Ruegeria pomeroyi
DSS-3]
gi|81349883|sp|Q5LSB0.1|RLME_SILPO RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|56678471|gb|AAV95137.1| ribosomal RNA large subunit methyltransferase J [Ruegeria pomeroyi
DSS-3]
Length = 233
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 35/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ GY R+AFK+L++ ++Y+ + PG+ V+DLGCAPG W QVA + + L
Sbjct: 37 DPYVKRAQAEGYRGRAAFKILELDEKYRFLVPGARVVDLGCAPGGWCQVAVKRVNALGER 96
Query: 68 -----GSVVGIDVKKVK---VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
G V+GID+++V+ +H + + D I L K V++S
Sbjct: 97 SDKRVGRVLGIDLQEVEPIAGAEIHQLDFLDDGADDRIK------EWLGGKA---DVVMS 147
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
DM S SG D MR + L A LA VL+ GG V K+
Sbjct: 148 DMAASSSGHKQTDH-------MRIIALCEAAAYLAFD-----------VLEEGGTFVAKV 189
Query: 180 L 180
L
Sbjct: 190 L 190
>gi|328949039|ref|YP_004366376.1| ribosomal RNA large subunit methyltransferase E [Treponema
succinifaciens DSM 2489]
gi|328449363|gb|AEB15079.1| Ribosomal RNA large subunit methyltransferase E [Treponema
succinifaciens DSM 2489]
Length = 220
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 26/180 (14%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
PD++ ++A + GY ARS +KL +I +++ ++K S +LDLG APG+W L +
Sbjct: 30 PDYWSQKAFKEGYPARSVYKLQEIDEKFGMLKKSSIILDLGAAPGSW---TVWLLRNIKQ 86
Query: 67 GGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV +D+ L D + + + +L S ++R L +Q + +++ D P +
Sbjct: 87 SGKVVSVDLN-----PLSKDVKAENLVFFQGDLLSEEIRNLIKEQGPYDLVVCDAAPLTT 141
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
G T D S L V++A+ A +LK GG+ +K+ ++ D Q
Sbjct: 142 GNRTIDTLRSKAL----VEMAIWYAG--------------AMLKTGGNFCVKIFQNGDQQ 183
>gi|283836275|ref|ZP_06356016.1| ribosomal RNA large subunit methyltransferase J [Citrobacter
youngae ATCC 29220]
gi|291067638|gb|EFE05747.1| ribosomal RNA large subunit methyltransferase J [Citrobacter
youngae ATCC 29220]
Length = 209
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ G +R+ FKL +IQ+ K+ KPG +++DLG APG W Q A +G N
Sbjct: 20 DKYVQQAQKKGLRSRAWFKLDEIQQSDKIFKPGMTIVDLGAAPGGWSQYAVTQIG---NS 76
Query: 68 GSVVGIDVKK----VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G ++ D+ V V L D R + V ++ + V++SDM P
Sbjct: 77 GRIIACDLLPMDPIVGVDFLQGDFRDELVLQALLERVGDS---------KVQVVMSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++ G A+ + M V+LALG A VL PGG V+K+ + +
Sbjct: 128 NMCGT----PAVDIPRAMYLVELALGMA--------------RDVLAPGGSFVVKVFQGE 169
>gi|242088869|ref|XP_002440267.1| hypothetical protein SORBIDRAFT_09g028780 [Sorghum bicolor]
gi|241945552|gb|EES18697.1| hypothetical protein SORBIDRAFT_09g028780 [Sorghum bicolor]
Length = 819
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/182 (32%), Positives = 83/182 (45%), Gaps = 33/182 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY A+ GY +R+AFKLLQ+ +++ + SVLDL APG W+QVA P+ G
Sbjct: 11 DKFYHLAKEQGYRSRAAFKLLQLDARFRFLPTARSVLDLCAAPGGWVQVAVNH-APV--G 67
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINL-PSNQVRALSPKQKGFSVILSDMC 122
VVG+D+ ++ SL D A V L SN V A F V+L D
Sbjct: 68 AFVVGVDLVPIRPIRGAHSLTEDITTTKCRAAVRRLMDSNGVSA-------FDVVLHDGS 120
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P+V G ++A L + A+ LA + L P G + K+ S
Sbjct: 121 PNVGGAWAQEATSQSALVIDALRLA------------------TMFLAPKGAFITKVFRS 162
Query: 183 QD 184
QD
Sbjct: 163 QD 164
>gi|115351226|ref|YP_773065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
AMMD]
gi|122323529|sp|Q0BGJ2.1|RLME_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|115281214|gb|ABI86731.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia ambifaria
AMMD]
Length = 220
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 40/184 (21%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVA---------- 57
D + + AQR GY AR+A+KL +I +Q KLI+PG ++DLG PG+W Q A
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNKLAQGKKR 76
Query: 58 -CQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116
Q G +D G+++ +D+ +P + A V + D + +R L +G +V
Sbjct: 77 DTQREGGID--GTIIALDL----LP-MEPIADVHFIQGDF--REDDVLRQLEDVLEGRAV 127
Query: 117 --ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
++SDM P++SG+ + DAA L DLAL A LKP G
Sbjct: 128 DLVISDMAPNLSGVASADAARIEHL----CDLALEFA--------------QNHLKPDGA 169
Query: 175 LVIK 178
L++K
Sbjct: 170 LLVK 173
>gi|347971390|ref|XP_003436733.1| AGAP013223-PA [Anopheles gambiae str. PEST]
gi|333468646|gb|EGK97007.1| AGAP013223-PA [Anopheles gambiae str. PEST]
Length = 242
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 11/131 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG----- 62
D + A+ + Y RSAFKLL+I +Y L+KPG +V+D G +PG+W Q+A +
Sbjct: 41 DPYVERAKMMNYRCRSAFKLLEIDNKYGLVKPGHTVIDCGASPGSWTQIAVKQSNADEGL 100
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDM 121
P G VVG+D+ ++ P H + ++D + + +++RA S ++ +LSDM
Sbjct: 101 PGKPKGMVVGVDLLQI-YPIEHA---ILFGNSDFLRKETQDKIRA-SLGERRVDCVLSDM 155
Query: 122 CPSVSGITTKD 132
P+ SGI D
Sbjct: 156 APNASGIRALD 166
>gi|392576542|gb|EIW69673.1| hypothetical protein TREMEDRAFT_71706 [Tremella mesenterica DSM
1558]
Length = 948
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 30/185 (16%)
Query: 2 SGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61
+G G D FY+ A+ GY ARSAFKL+ + ++Y L+ +DL APG WLQVA +
Sbjct: 8 TGKGRLDKFYKLAKEQGYRARSAFKLIHLNRKYDLLAKSKCTIDLCAAPGGWLQVAEKY- 66
Query: 62 GPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILS 119
+ G ++G+D+ ++ V T +D I P N +R+ K ++L
Sbjct: 67 --MPKGSLIIGVDLHPIRAL-----PHVTTFVSD-ITTPQCRNLLRSHMHDWKA-DLVLH 117
Query: 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179
D P+V +DA EL ++++ LA + L GG+ V K+
Sbjct: 118 DGAPNVGSAWVQDAFTQNELVLQSLKLA------------------TEFLVKGGNFVTKV 159
Query: 180 LESQD 184
SQD
Sbjct: 160 FRSQD 164
>gi|225711000|gb|ACO11346.1| ribosomal RNA methyltransferase CG11447 [Caligus rogercresseyi]
Length = 251
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 11/145 (7%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A D + ++A+ GY ARSA+KLL++ + K+++P +V++ G APGAW QV + +
Sbjct: 57 AKDIYVKKARSEGYRARSAYKLLEMDDKLKILRPNMNVMECGGAPGAWTQVLTERV---- 112
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSP--KQKGFSVILSDMCP 123
+ G ++ D+ + P H + ++D + PS Q LS K GF ++LSDM P
Sbjct: 113 SSGMIISCDLLDYE-PVGHA---IILPNSDFTS-PSTQDTILSHLGKSSGFDLVLSDMAP 167
Query: 124 SVSGITTKDAALSVELGMRAVDLAL 148
+ SG+ + + L A AL
Sbjct: 168 NASGMAELNHGQILNLSYEATKFAL 192
>gi|443895293|dbj|GAC72639.1| cell division protein FtsJ [Pseudozyma antarctica T-34]
Length = 301
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 6/136 (4%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG-PLDNGGSVVGIDVKK 77
YVARSAFKL+Q+ ++Y+ ++PG ++DLG APG W Q + + P V +D+
Sbjct: 75 YVARSAFKLIQLDERYRFLRPGRVIVDLGAAPGGWSQAIVERIHRPKAARTPVFALDLLP 134
Query: 78 VK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGF-SVILSDMCPSVSGITTKD 132
V V S+ D V A + L ++ A + Q+GF V++SDM + +G D
Sbjct: 135 VAEIDGVTSIQGDFLDGNVQAQLRKLVADASSASATDQRGFVDVVVSDMMANTTGNPITD 194
Query: 133 AALSVELGMRAVDLAL 148
S+EL A A
Sbjct: 195 TEASLELCRAAASFAF 210
>gi|50311753|ref|XP_455905.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49645041|emb|CAG98613.1| KLLA0F18414p [Kluyveromyces lactis]
Length = 301
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 86/180 (47%), Gaps = 26/180 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR+A+ GY ARSAFKLLQ+ + ++ V+DL APG+W QV + L P +
Sbjct: 10 DLYYRKAKEQGYRARSAFKLLQLDDDFHFLQQAVRVVDLCAAPGSWSQVLSRRLFPQSSD 69
Query: 68 GS---VVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPS 124
S +V +D++ P D V T+ AD+ + + Q + K I SD P
Sbjct: 70 NSDRKIVAVDLQ----PMSPID-NVITLQADITHPKTLQTITELFEGKKADFICSDGAPD 124
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
V+G+ D + +L + A+ L+ + +L+ GG+ V K+ +D
Sbjct: 125 VTGLHDLDEYVQQQLILSALQLS------------------TCLLRKGGNFVAKIFRGRD 166
>gi|452981113|gb|EME80873.1| hypothetical protein MYCFIDRAFT_100647, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 258
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + REA+ G +R+AFKLL+I ++Y+L G +V+DLG APG+W QVA + P G
Sbjct: 13 DAYSREAKVAGLKSRAAFKLLEINEKYRLFHKGDTVVDLGFAPGSWSQVAVNRVSP---G 69
Query: 68 GSVVGIDV 75
G VVGID+
Sbjct: 70 GRVVGIDI 77
>gi|383457051|ref|YP_005371040.1| ribosomal RNA large subunit methyltransferase J [Corallococcus
coralloides DSM 2259]
gi|380734271|gb|AFE10273.1| ribosomal RNA large subunit methyltransferase J [Corallococcus
coralloides DSM 2259]
Length = 206
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 85/143 (59%), Gaps = 12/143 (8%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYK-LIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
D ++++A++ G ARSAFK+ +I K++ +K G++VLDLG APG +LQ+ ++G
Sbjct: 9 DHYFQKAKQEGLRARSAFKVDEILKRFPGSVKKGAAVLDLGAAPGGFLQILADAVG---M 65
Query: 67 GGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRA-LSPKQKG-FSVILSDMCPS 124
G V+G+D+ ++ S + V+ V+++ ++ A L+ G + ++SDM P
Sbjct: 66 NGRVIGVDIAAIRPFSQ------KWVTTAVLDVLADDFDAKLAALYDGPYDAVISDMAPK 119
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
SGI D A S+ L +A+++A
Sbjct: 120 TSGIKGTDEARSLRLAGKALEVA 142
>gi|167042175|gb|ABZ06908.1| putative FtsJ-like methyltransferase [uncultured marine
crenarchaeote HF4000_ANIW93H17]
Length = 197
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 23/138 (16%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
D + + A GY +RS++KL ++ K Y++I G VLDLGCAPG W QVA Q G N
Sbjct: 8 KDHYRKLASVEGYRSRSSYKLKELHKSYRIIGVGHYVLDLGCAPGGWTQVAVQLAG---N 64
Query: 67 GGSVVGIDVKKV-KVPSLH------CDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119
G V+G+D V ++P + CD +V+ +V++ +V +V++
Sbjct: 65 KGKVMGVDTSFVEEIPGAYMLKSDICDG---SVTKEVLSFFGKKV----------NVVIC 111
Query: 120 DMCPSVSGITTKDAALSV 137
D+ P V+G + D + +
Sbjct: 112 DLSPQVTGNWSVDHSTQI 129
>gi|397480218|ref|XP_003811384.1| PREDICTED: putative rRNA methyltransferase 3 [Pan paniscus]
Length = 846
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 28/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D FY A+ GY +RSAFKL+Q+ ++++ ++ ++LDL APG WLQVA + + P+ +
Sbjct: 13 DKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAKFM-PVSS- 70
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
+VG+D+ +K +P+ V T+ D+ Q K V+L+D P+V
Sbjct: 71 -LIVGVDLVPIKPLPN------VVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVG 123
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
DA L + A+ LA L GG + K+ S+D Q
Sbjct: 124 ASWVHDAYSQAHLTLMALRLA------------------CDFLARGGSFITKVFRSRDYQ 165
>gi|341889636|gb|EGT45571.1| hypothetical protein CAEBREN_14422 [Caenorhabditis brenneri]
Length = 350
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 27/180 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A+ + ARSAFKL+QI +++++K +DL APG+W QV + L D
Sbjct: 10 DIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLSKRLYEEDKD 69
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSV 125
+V ID++ + +P V + D+ ++ + NQV +K +++ D P V
Sbjct: 70 AKIVAIDLQPMAPIPG------VIQLQGDITSVDTANQVIEHFSGEKS-DIVICDGAPDV 122
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
+GI + D + EL + A ++ S VLK GG+ + K+ S+++
Sbjct: 123 TGIHSLDEFMQAELILAAFNIT------------------SHVLKIGGNFLAKIFRSRNS 164
>gi|240274199|gb|EER37717.1| cell division cycle protein [Ajellomyces capsulatus H143]
Length = 355
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A D + REA G +R+AFKLLQI +YK+ KPG S++DLG APG+W QVA P
Sbjct: 63 AKDKYSREAGVKGLKSRAAFKLLQINDRYKIFKPGQSIVDLGYAPGSWSQVAVDLTRP-- 120
Query: 66 NGGSVVGIDV 75
G VVG+D+
Sbjct: 121 -NGRVVGVDI 129
>gi|254510861|ref|ZP_05122928.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
bacterium KLH11]
gi|221534572|gb|EEE37560.1| ribosomal RNA large subunit methyltransferase J [Rhodobacteraceae
bacterium KLH11]
Length = 238
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 15/132 (11%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + + AQ GY R+AFK+L++ ++++ + PG+ V+DLGCAPG WLQVA + + L
Sbjct: 42 DPYVKRAQAEGYRGRAAFKILELDEKFRFLVPGARVVDLGCAPGGWLQVAVKRVNALGEK 101
Query: 68 -----GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG--FSVILSD 120
G+V+G+D+++V+ P V +A V++ + G V++SD
Sbjct: 102 SGKRIGTVLGVDLQEVE-P-------VAGATAHVLDFMEDDADQKVKDWLGGKADVVMSD 153
Query: 121 MCPSVSGITTKD 132
M + SG D
Sbjct: 154 MAAASSGHKQTD 165
>gi|121713778|ref|XP_001274500.1| rRNA methyltransferase Spb1, putative [Aspergillus clavatus NRRL 1]
gi|119402653|gb|EAW13074.1| rRNA methyltransferase Spb1, putative [Aspergillus clavatus NRRL 1]
Length = 796
Score = 71.2 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G G D +YR A+ GY AR+AFKL+Q+ K+Y ++ +LDL APG+W QVA +
Sbjct: 8 GKGRLDKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEC-- 65
Query: 63 PLDNGGSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
+ +VG+D+ +K +P RV T +D+ K +L D
Sbjct: 66 -MPTQSIIVGVDLAPIKPIP------RVITFQSDITTEKCRATIRQHLKHWKADTVLHDG 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
P+V +DA EL ++++ LA + L GG V K+
Sbjct: 119 APNVGTAWVQDAFSQAELVLQSMKLA------------------TEFLAEGGTFVTKVFR 160
Query: 182 SQD 184
S+D
Sbjct: 161 SKD 163
>gi|172060240|ref|YP_001807892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
MC40-6]
gi|226703284|sp|B1YMW2.1|RLME_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|171992757|gb|ACB63676.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
MC40-6]
Length = 220
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 26/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL--GPLD 65
D + + AQR GY AR+A+KL +I +Q KLI+PG ++DLG PG+W Q A L G
Sbjct: 17 DPYVKMAQREGYRARAAYKLKEIDEQDKLIRPGQVIVDLGATPGSWSQYARNKLAQGKKR 76
Query: 66 NGGSVVGIDVKKVKVPSLHCD--ARVQTVSADVINLPSNQVRALSPKQKGFSV--ILSDM 121
+ GID + + L + A V + D + +R L +G +V ++SDM
Sbjct: 77 DTQREGGIDGTIIALDLLPMEPIADVHFIQGDFRE--DDVLRQLEDVLEGRAVDLVISDM 134
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178
P++SG+ + DAA L DLAL A LKP G L++K
Sbjct: 135 APNLSGVASADAARIEHL----CDLALEFA--------------QNHLKPDGALLVK 173
>gi|77359818|ref|YP_339393.1| 23S rRNA methyltransferase J [Pseudoalteromonas haloplanktis
TAC125]
gi|123587311|sp|Q3IE64.1|RLME_PSEHT RecName: Full=Ribosomal RNA large subunit methyltransferase E;
AltName: Full=23S rRNA Um2552 methyltransferase;
AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
gi|76874729|emb|CAI85950.1| ribosomal RNA large subunit methyltransferase J (rRNA
(uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552
methyltransferase) (Cell division protein ftsJ)
[Pseudoalteromonas haloplanktis TAC125]
Length = 209
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 34/180 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +EAQ+ G+ +R+ FKL ++Q + KL++P +V+DLG APG+W Q + +G +
Sbjct: 20 DKYVQEAQKKGWRSRAVFKLDEVQSRDKLLRPAMTVVDLGAAPGSWSQYLAEKVG---DK 76
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V + ++ K V+LSDM P
Sbjct: 77 GQVIACDILPMDSLAGVDFLQGDFREEAVLSALLKRIDG---------KNVDVVLSDMAP 127
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG + D A S+ L A+D+ + VLK G ++K+ + +
Sbjct: 128 NMSGNNSVDQAGSMYLVELALDMC------------------NQVLKKNGAFIVKVFQGE 169
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,835,379,062
Number of Sequences: 23463169
Number of extensions: 105246819
Number of successful extensions: 285158
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2388
Number of HSP's successfully gapped in prelim test: 507
Number of HSP's that attempted gapping in prelim test: 280178
Number of HSP's gapped (non-prelim): 3128
length of query: 186
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 52
effective length of database: 9,215,130,721
effective search space: 479186797492
effective search space used: 479186797492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 72 (32.3 bits)