BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038391
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
pdb|2NYU|B Chain B, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
Length = 196
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Query: 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG-----PLDNGGSVVGI 73
Y +RSAFKLL++ +++++++PG VLD G APGAW QVA Q + P G V+G+
Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV 61
Query: 74 DVKKVKVPSLHCDARVQTVSADVINLPSNQVRALS--PKQKGFSVILSDMCPSVSGITTK 131
D+ + + ADV + P R L P ++ VILSDM P+ +G
Sbjct: 62 DLLHI----FPLEGATFLCPADVTD-PRTSQRILEVLPGRRA-DVILSDMAPNATGFRDL 115
Query: 132 D 132
D
Sbjct: 116 D 116
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 34/170 (20%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
G +R+ FKL +IQ+ KL KPG +V+DLG APG W Q +G G ++ D+
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIG---GKGRIIACDLLP 57
Query: 78 ----VKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA 133
V V L D R + V ++ + V++SDM P++SG
Sbjct: 58 MDPIVGVDFLQGDFRDELVMKALLERVGDS---------KVQVVMSDMAPNMSGT----P 104
Query: 134 ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
A+ + M V+LAL VL PGG V+K+ + +
Sbjct: 105 AVDIPRAMYLVELAL--------------EMCRDVLAPGGSFVVKVFQGE 140
>pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell
Division From Thermoplasma Volcanicum Gss1
Length = 191
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 75/135 (55%), Gaps = 22/135 (16%)
Query: 21 ARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK- 79
+R+AFKL + +Y++++ G +V+++G +PG W QV SL ++ ID+++ +
Sbjct: 7 SRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQV-LNSLAR-----KIISIDLQEXEE 60
Query: 80 ---VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV---ILSDMCPSVSGITTKDA 133
V + CD +T+ D+ RAL +++G ++SD VSGI ++D
Sbjct: 61 IAGVRFIRCDIFKETIFDDI-------DRAL--REEGIEKVDDVVSDAXAKVSGIPSRDH 111
Query: 134 ALSVELGMRAVDLAL 148
A+S ++G R ++A+
Sbjct: 112 AVSYQIGQRVXEIAV 126
>pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase,
Putative, From Plasmodium Falciparum (Pf13_0052)
Length = 201
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 18 GYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVK 76
Y +R+A+KL+++ +Y +K +LD+GC PG+W QV + N ++GID K
Sbjct: 1 NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKN--KIIGIDKK 57
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDA 87
L ++ + ++PG VLDLG G L +A + L GG +G+D+ + +P +A
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGV-LAIAAEKL-----GGKALGVDIDPMVLPQAEANA 162
Query: 88 RVQTVSADVIN 98
+ V +
Sbjct: 163 KRNGVRPRFLE 173
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDA 87
L ++ + ++PG VLDLG G L +A + L GG +G+D+ + +P +A
Sbjct: 109 LALKALARHLRPGDKVLDLGTGSGV-LAIAAEKL-----GGKALGVDIDPMVLPQAEANA 162
Query: 88 RVQTVSADVIN 98
+ V +
Sbjct: 163 KRNGVRPRFLE 173
>pdb|3OPN|A Chain A, The Crystal Structure Of A Putative Hemolysin From
Lactococcus Lactis
Length = 232
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 13 EAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
+ ++L YV+R KL + K++ L G + LD+G + G + V Q+
Sbjct: 11 KGEKLRYVSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVXLQN 58
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID-----VKKVK--VPSLHCD 86
+PG +LDLGC G + QS G V+G D ++K + P LH D
Sbjct: 56 QPGEFILDLGCGTGQLTEKIAQS------GAEVLGTDNAATXIEKARQNYPHLHFD 105
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 38 KPGSSVLDLGCAPGAWLQVACQSLGPL-DNGGSVVGIDVKKVKVPSL 83
KPG +V+DL APG L L N G + DV K+++ L
Sbjct: 258 KPGETVVDLAAAPGG----KTTHLAELMKNKGKIYAFDVDKMRMKRL 300
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQ 90
K G SVLDLGC G L + + G G G+D+ +V + DARV+
Sbjct: 63 KRGDSVLDLGCGKGGDL-LKYERAGI----GEYYGVDIAEVSIN----DARVR 106
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDAR 88
++++ K VLD+GC G +L++ C+ + G +G+D+ + + C+ +
Sbjct: 31 RLRRYIPYFKGCRRVLDIGCGRGEFLEL-CK-----EEGIESIGVDINEDMIK--FCEGK 82
Query: 89 VQTVSADVIN 98
V +D I
Sbjct: 83 FNVVKSDAIE 92
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 22 RSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV 75
R L I + ++ +KPG +L++GC G V +G + G V GID+
Sbjct: 27 RQTAHRLAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVG---SSGHVTGIDI 76
>pdb|3UWC|A Chain A, Structure Of An Aminotransferase (Degt-Dnrj-Eryc1-Strs
Family) From Coxiella Burnetii In Complex With Pmp
Length = 374
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 21/86 (24%)
Query: 51 GAWLQVACQSLGPLDN-------GGSVVGID--VKKVKVPSLH------------CDARV 89
G+W Q AC SL PL N G + D +K+++ H + R
Sbjct: 173 GSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRX 232
Query: 90 QTVSADVINLPSNQVRALSPKQKGFS 115
T+ A + N NQ+ ++ K++G +
Sbjct: 233 DTIQAVIANRLXNQLETITEKRRGIA 258
>pdb|3M8L|A Chain A, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
pdb|3M8L|C Chain C, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 534
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 21/94 (22%)
Query: 10 FYREAQRLGYVARS--AF--KLLQIQKQ---------------YKLIKPGSSVLDLGCAP 50
FYR + +LGYV +S F ++L +Q Y++I S D+G
Sbjct: 438 FYRNSMKLGYVIKSIDVFNSQILHTSRQLSLNNYLLSPDSFAVYRIIDSNGSWFDIGIDS 497
Query: 51 GAWLQVACQSLGPLDN--GGSVVGIDVKKVKVPS 82
+ V S+G L+ S +G + K+++ S
Sbjct: 498 DGFSFVGVSSIGKLEFPLTASYMGNQLAKIRLAS 531
>pdb|3M8L|B Chain B, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 530
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 21/94 (22%)
Query: 10 FYREAQRLGYVARS--AF--KLLQIQKQ---------------YKLIKPGSSVLDLGCAP 50
FYR + +LGYV +S F ++L +Q Y++I S D+G
Sbjct: 434 FYRNSMKLGYVIKSIDVFNSQILHTSRQLSLNNYLLSPDSFAVYRIIDSNGSWFDIGIDS 493
Query: 51 GAWLQVACQSLGPLDN--GGSVVGIDVKKVKVPS 82
+ V S+G L+ S +G + K+++ S
Sbjct: 494 DGFSFVGVSSIGKLEFPLTASYMGNQLAKIRLAS 527
>pdb|3ELD|A Chain A, Wesselsbron Methyltransferase In Complex With Sinefungin
pdb|3ELU|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
pdb|3ELW|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
And Gpppg
pdb|3ELY|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adohcy
pdb|3EMB|A Chain A, Wesselsbron Virus Methyltransferase In Complex With Adomet
And 7megpppg
pdb|3EMD|A Chain A, Wesselsbron Virus Methyltransferase In Complex With
Sinefungin And 7megpppa
Length = 300
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGID 74
V+R A K+ + ++ L G VLDLGC G W A + G +GI+
Sbjct: 63 VSRGAAKIRWLHERGYLRITGR-VLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE 116
>pdb|3GCZ|A Chain A, Yokose Virus Methyltransferase In Complex With Adomet
Length = 282
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAW 53
V+R + KL ++++ +KP V+DLGC G W
Sbjct: 72 VSRGSAKLRWMEER-GYVKPTGIVVDLGCGRGGW 104
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDV 75
G++VLDLGC G + +A + +G G V+G+D+
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVG---EHGKVIGVDM 116
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 12 REAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGA 52
REA RL A + KLL Y PG+ VL+ GC GA
Sbjct: 13 REALRLSEQAETLEKLLHHDTVYP---PGAKVLEAGCGIGA 50
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
+VLDLGCA G + SL G ++VGID ++
Sbjct: 69 NVLDLGCAQGFF------SLSLASKGATIVGIDFQQ 98
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
Query: 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKK 77
+VLDLGCA G + SL G ++VGID ++
Sbjct: 69 NVLDLGCAQGFF------SLSLASKGATIVGIDFQQ 98
>pdb|1L9K|A Chain A, Dengue Methyltransferase
pdb|2P1D|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With Gtp And S-Adenosyl-L-Homocysteine
pdb|2P3L|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With Gpppa And S-Adenosyl-L-Homocysteine
pdb|2P3O|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With 7megpppa And S-adenosyl-l-homocysteine
pdb|2P3Q|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With Gpppg And S-Adenosyl-L-Homocysteine
pdb|2P40|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With 7megpppg
pdb|2P41|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With 7megpppg2'ome And S-Adenosyl-L-Homocysteine
Length = 305
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAW 53
V+R + KL ++ L+ P V+DLGC G W
Sbjct: 64 VSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGW 96
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80
+VLDLGCA G + SL G ++VGID ++ +
Sbjct: 69 NVLDLGCAQGFF------SLSLASKGATIVGIDFQQENI 101
>pdb|1R6A|A Chain A, Structure Of The Dengue Virus 2'o Methyltransferase In
Complex With S-Adenosyl Homocysteine And Ribavirin 5'
Triphosphate
Length = 295
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAW 53
V+R + KL ++ L+ P V+DLGC G W
Sbjct: 54 VSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGW 86
>pdb|3LKZ|A Chain A, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
pdb|3LKZ|B Chain B, Structural And Functional Analyses Of A Conserved
Hydrophobic Pocket Of Flavivirus Methyltransferase
Length = 321
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAW 53
V+R KL + ++ + ++P V+DLGC G W
Sbjct: 76 VSRGTAKLRWLVER-RFLEPVGKVIDLGCGRGGW 108
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADV 96
+KPG ++LD+GC G ++ A + +V+G+ + K + AR + V A +
Sbjct: 88 LKPGMTLLDIGCGWGTTMRRAVERFDV-----NVIGLTLSKNQ------HARCEQVLASI 136
Query: 97 INLPSNQV 104
S QV
Sbjct: 137 DTNRSRQV 144
>pdb|2OY0|A Chain A, Crystal Structure Of The West Nile Virus
Methyltransferase
pdb|2OY0|B Chain B, Crystal Structure Of The West Nile Virus
Methyltransferase
Length = 262
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAW 53
V+R KL + ++ + ++P V+DLGC G W
Sbjct: 50 VSRGTAKLRWLVER-RFLEPVGKVIDLGCGRGGW 82
>pdb|2PX8|A Chain A, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-O Methyltransferase Domain In Complex With
Sah And 7m-Gtp
pdb|2PX8|B Chain B, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-O Methyltransferase Domain In Complex With
Sah And 7m-Gtp
Length = 269
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVA 57
V+R KL + ++ + ++P V+DLGC G W A
Sbjct: 55 VSRGTAKLRWLVER-RFVQPIGXVVDLGCGRGGWSYYA 91
>pdb|2PX2|A Chain A, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-O Methyltransferase Domain In Complex With
Sah (Monoclinic Form 1)
pdb|2PX2|B Chain B, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-O Methyltransferase Domain In Complex With
Sah (Monoclinic Form 1)
pdb|2PX4|A Chain A, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-O Methyltransferase Domain In Complex With
Sah (Monoclinic Form 2)
pdb|2PX5|A Chain A, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-O Methyltransferase Domain In Complex With
Sah (Orthorhombic Crystal Form)
pdb|2PX5|B Chain B, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-O Methyltransferase Domain In Complex With
Sah (Orthorhombic Crystal Form)
pdb|2PXA|A Chain A, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-o Methyltransferase Domain In Complex With
Sah And Gtpg
pdb|2PXA|B Chain B, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-o Methyltransferase Domain In Complex With
Sah And Gtpg
pdb|2PXC|A Chain A, Crystal Structure Of The Murray Valley Encephalitis
Virus Ns5 2'-o Methyltransferase Domain In Complex With
Sam And Gtpa
Length = 269
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVA 57
V+R KL + ++ + ++P V+DLGC G W A
Sbjct: 55 VSRGTAKLRWLVER-RFVQPIGKVVDLGCGRGGWSYYA 91
>pdb|3LW5|L Chain L, Improved Model Of Plant Photosystem I
Length = 161
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 137 VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177
+E+G+ L +GP A P+ N++ + +G L GG +VI
Sbjct: 50 IEVGLAHGYLLVGPFVKAGPLRNTEIAGQAGSLAAGGLVVI 90
>pdb|1YQQ|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQQ|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQQ|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YQU|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|A Chain A, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|B Chain B, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|C Chain C, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|D Chain D, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|E Chain E, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
pdb|1YR3|F Chain F, Escherichia Coli Purine Nucleoside Phosphorylase Ii, The
Product Of The Xapa Gene
Length = 277
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 67 GGSVVGIDVKKVKVPSLHCDARVQTVSA 94
GG VVG+ V + + HCD +V VSA
Sbjct: 209 GGDVVGMSVVPEVISARHCDLKVVAVSA 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,267,905
Number of Sequences: 62578
Number of extensions: 191112
Number of successful extensions: 550
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 36
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)