BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038391
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B9LSX2|RLME_HALLT Ribosomal RNA large subunit methyltransferase E OS=Halorubrum
lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 /
ACAM 34) GN=rlmE PE=3 SV=1
Length = 269
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 99/184 (53%), Gaps = 27/184 (14%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y ++++ GY ARSA+KL QI ++ L + G +V+DLG APG WLQVA +
Sbjct: 1 MSG---KDEYYNKSKQQGYRARSAYKLKQIDEEANLFERGDTVVDLGAAPGGWLQVAAEE 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120
+G G+VVG+D++++ H V+T+ D+ + + ++G V++SD
Sbjct: 58 VG---ESGTVVGVDLQRIDDLDDHD---VETIRGDMTEERTRHYLREAIGERGADVVISD 111
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
M P+++G D A SV L +A D+A +L PGG V+K+
Sbjct: 112 MAPNMTGEYALDHARSVHLARQAFDVA------------------EELLAPGGDFVVKVF 153
Query: 181 ESQD 184
+ +D
Sbjct: 154 QGED 157
>sp|A0LGZ0|RLME_SYNFM Ribosomal RNA large subunit methyltransferase E OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=rlmE PE=3 SV=1
Length = 197
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 96/174 (55%), Gaps = 26/174 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++ +A++ Y+AR+ +KL +IQ +YK++KPG+ VLDLG APG+W+Q A + +GP
Sbjct: 7 DHYFHKAKKEHYLARAVYKLQEIQDRYKILKPGNRVLDLGAAPGSWMQFAREIVGP---S 63
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D+K V+ V + DV + R+LS + F V+LSDM PS SG
Sbjct: 64 GLVVGVDLKGVE---HRFPEGVVVLQGDVTD--PELARSLSVEHGPFDVVLSDMAPSTSG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
I D+A S L A+++A L+PGGH V KL +
Sbjct: 119 IRVADSARSALLFESALEMA------------------RSALRPGGHFVAKLFQ 154
>sp|B8FL12|RLME_DESAA Ribosomal RNA large subunit methyltransferase E
OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rlmE
PE=3 SV=1
Length = 207
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 27/176 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +AQ+ G+ ARS FKL ++QK++K+++PG VLDLGCAPG+WL+ A Q +G +
Sbjct: 13 DHYTDKAQKAGFPARSVFKLEEMQKRWKILRPGQKVLDLGCAPGSWLKYASQIVG---DS 69
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+K + P Q + D L + + + F V+LSDM P+ +G
Sbjct: 70 GRVIGLDLKPMDQPD---KPNAQFIQGDAFELTQEFLDEIG---RDFDVVLSDMAPNTTG 123
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
I DA S AL +ALA+ V VLKPGG V K+ + +
Sbjct: 124 IKNVDALKSA---------ALCESALAAAVT---------VLKPGGSFVCKIFQGE 161
>sp|A8ZT18|RLME_DESOH Ribosomal RNA large subunit methyltransferase E OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=rlmE PE=3 SV=1
Length = 207
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 94/184 (51%), Gaps = 27/184 (14%)
Query: 3 GVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLG 62
G PD + R+A+ Y ARS +KL +IQK++ ++KPG++VLDLGC PG+W+ A +++G
Sbjct: 8 GRKTPDHYARKAKTEHYPARSVYKLQEIQKKHNVLKPGNAVLDLGCFPGSWMMFAAETVG 67
Query: 63 PLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122
GG V GID+KKV + H A+ ++ D+ + AL+ V+LSDM
Sbjct: 68 ---RGGKVTGIDLKKV---ATHMPAQATSLQEDIYEIDRE---ALAGTLGPLDVVLSDMA 118
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P G DAA S + + +LKPGGH V K+ +
Sbjct: 119 PDTMGNKFTDAARSFH------------------LAAAALDLALFLLKPGGHFVCKVFQG 160
Query: 183 QDAQ 186
+D Q
Sbjct: 161 EDFQ 164
>sp|Q58771|RLME_METJA Ribosomal RNA large subunit methyltransferase E
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rlmE PE=3
SV=1
Length = 245
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 87/141 (61%), Gaps = 6/141 (4%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y+ A++L Y +R++FKL+Q+ +++ +IKPG VLDLGCAPG W+QVA + +G +
Sbjct: 15 DFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAREIVG---DK 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPK-QKGFSVILSDMCPSVS 126
G V+GID++ VK D V + N++R L P +K V++SD P++S
Sbjct: 72 GFVIGIDLQPVK--PFEYDNVVAIKGDFTLEENLNKIRELIPNDEKKVDVVISDASPNIS 129
Query: 127 GITTKDAALSVELGMRAVDLA 147
G D A S++L A+ +A
Sbjct: 130 GYWDIDHARSIDLVTTALQIA 150
>sp|Q18E61|RLME_HALWD Ribosomal RNA large subunit methyltransferase E OS=Haloquadratum
walsbyi (strain DSM 16790) GN=rlmE PE=3 SV=1
Length = 256
Score = 100 bits (248), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 24/177 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY RSA+KL QI + PG++V+DLG APG WLQVA +++GP
Sbjct: 5 DEYYNRAKQEGYRTRSAYKLQQIDADAGVFGPGNTVIDLGAAPGGWLQVAAEAVGP---S 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G+V+G+D ++++ L D V T+ D+ + + +V+LSDM P+++G
Sbjct: 62 GTVIGVDFQRIR--DLESDI-VDTIRGDMTDESTKNALRKRVNNSSVNVVLSDMAPNMTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
+ D A SV L +A +A + +L GG ++K+ + +D
Sbjct: 119 EYSVDHARSVHLARQAFSVA------------------TDILPAGGDFIVKVFDGRD 157
>sp|Q9HN40|RLME_HALSA Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=rlmE PE=3 SV=1
Length = 259
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY +R+A+KL Q+ ++ ++ G+SV+DLG APG WLQVA + G
Sbjct: 6 DHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGAR--- 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D + + DA ++TV D+ + Q R V++SDM P ++G
Sbjct: 63 GKVVGVDFQ--SITQFETDAGLETVRGDMTEDETRQ-RVRDAANGSADVVVSDMAPDMTG 119
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A SV L +A++ A +L GGH V+K+ + +D Q
Sbjct: 120 EYDLDHARSVHLARQALETA------------------RELLDAGGHFVVKVFDGRDFQ 160
>sp|B0R7G3|RLME_HALS3 Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rlmE
PE=3 SV=1
Length = 259
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y ++++ GY +R+A+KL Q+ ++ ++ G+SV+DLG APG WLQVA + G
Sbjct: 6 DHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGAR--- 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VVG+D + + DA ++TV D+ + Q R V++SDM P ++G
Sbjct: 63 GKVVGVDFQ--SITQFETDAGLETVRGDMTEDETRQ-RVRDAANGSADVVVSDMAPDMTG 119
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
D A SV L +A++ A +L GGH V+K+ + +D Q
Sbjct: 120 EYDLDHARSVHLARQALETA------------------RELLDAGGHFVVKVFDGRDFQ 160
>sp|Q8TR92|RLME_METAC Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rlmE PE=3 SV=1
Length = 272
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 34/177 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A+ GY +R++FKL QI +++ +IK G SV+DLG APG WLQVA Q +G
Sbjct: 7 DYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQL-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSN---QVRALSPKQKGFSVILSDMCPS 124
G V+G+D++++ P V+T+ D IN S +RA+ +KG V+L D P+
Sbjct: 62 GKVLGVDLQRI-API----EGVETIQGD-INADSTIKKIIRAVG--EKGADVVLCDAAPN 113
Query: 125 VSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+SG + D A S+EL A++ A +LKP G+ V+K+ +
Sbjct: 114 LSGNWSYDHARSIELTTSALECA------------------KKILKPKGNFVVKVFQ 152
>sp|Q8PUP4|RLME_METMA Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=rlmE PE=3 SV=1
Length = 268
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 36/178 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A+ GY +R++FKL QI +++ +IK G SV+DLG APG WLQVA Q +G
Sbjct: 7 DYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQL-----SG 61
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+G+D++++ V ++ D ++ +I + +KG V+L D P
Sbjct: 62 GKVLGVDLQRIDPIEGVETIQGDINAESTIKKIIKIVG---------EKGADVVLCDAAP 112
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG + D A S+EL A++ A +LKP G+ +K+ +
Sbjct: 113 NLSGNWSYDHARSIELATSALECA------------------KKILKPKGNFAVKVFQ 152
>sp|O28228|RLME_ARCFU Ribosomal RNA large subunit methyltransferase E OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rlmE PE=3 SV=1
Length = 191
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 95/181 (52%), Gaps = 35/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++Y +A++ GY +R+A+KLLQ+ + +KLI+ G VLDLG PG W QVA G
Sbjct: 6 DYYYWKAKKEGYRSRAAYKLLQMNRTFKLIREGDLVLDLGATPGGWSQVAALL------G 59
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILSDMCPSV 125
VV +D+ +K V + D I LP ++R +SP + V++SD P +
Sbjct: 60 ARVVAVDINPMKPLE-----NVTFIRGD-ITLPETLEKIREISP---DYDVVMSDASPKI 110
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185
SG T D +R++DLA ++A VLKPGG+ V+K+ + ++
Sbjct: 111 SGKWTIDH-------LRSIDLARASFSIAKE-----------VLKPGGNFVVKVFQGEEI 152
Query: 186 Q 186
Q
Sbjct: 153 Q 153
>sp|Q466Q1|RLME_METBF Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=rlmE PE=3 SV=1
Length = 263
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 96/174 (55%), Gaps = 28/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D++YR+A+ GY +R++FKL QI +++ +I G SV+DLG APG WLQVA + +G
Sbjct: 7 DYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQVAKEL-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D++++ VP V+T+ ++ + Q + KG V+L D P++SG
Sbjct: 62 GKVLGVDLQRI-VPI----EGVETIQGNINADSTIQKIIKTVGAKGADVVLCDAAPNLSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ D A S+EL A++ A +LKP G+ V+K+ +
Sbjct: 117 NWSYDHARSIELATSALECA------------------KKILKPKGNFVVKVFQ 152
>sp|Q0W1F9|RLME_UNCMA Ribosomal RNA large subunit methyltransferase E OS=Uncultured
methanogenic archaeon RC-I GN=rlmE PE=3 SV=1
Length = 256
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 29/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y +A+++GY +R++FKL I K++ +IK G +V+DLG APG WLQVA + L+ G
Sbjct: 7 DHYYNKAKQMGYRSRASFKLQFINKKHHIIKKGDTVVDLGAAPGGWLQVAKE----LNGG 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+++++ V+T+ D+ + P Q R + ++ D P++SG
Sbjct: 63 GKVIGVDLQRIEPIE-----GVETIKGDMTS-PETQARIFEIVDE-VDTVICDAAPNLSG 115
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
D A S++L A+D+A + +LK GG+ V+K+ +
Sbjct: 116 NWALDHARSIDLATVALDVA------------------TKLLKKGGNFVVKVFQ 151
>sp|Q6MN40|RLME_BDEBA Ribosomal RNA large subunit methyltransferase E OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=rlmE PE=3 SV=1
Length = 196
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++R+A++ + ARS FKL +I +++K+ KPG VLDLG +PG+W Q A + G
Sbjct: 7 DHYFRKAKQENFAARSVFKLEEIDQKFKMFKPGQVVLDLGASPGSWSQYASKMAG---EK 63
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+G+D+ V V + + AD+ +L + F +++SDM P +G
Sbjct: 64 GRVLGVDLSPVTVKLKNA----VFIQADLRDLNLEDIFKEHGFVPPFDIVMSDMAPKTTG 119
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
I D A S+EL A+D+A LK GH V KL S D
Sbjct: 120 IRMTDQARSMELCELALDVA------------------RRFLKKDGHFVCKLFHSDD 158
>sp|Q3IT24|RLME_NATPD Ribosomal RNA large subunit methyltransferase E OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=rlmE PE=3
SV=1
Length = 252
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 92/178 (51%), Gaps = 30/178 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ GY +R+A+KL Q+ + LI G +V+DLG APG WLQVA + G
Sbjct: 5 DDYYNRAKQQGYRSRAAYKLKQLDEAADLINEGDTVVDLGAAPGGWLQVANELAG---EA 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVI-NLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G+VVG+D++++ V+TV D+ + +VRAL + V++SDM P+++
Sbjct: 62 GTVVGVDLQRIDPIE-----GVETVRGDMTEDATREKVRALVGEA---DVVISDMAPNMT 113
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
G + D A SV L A + AL +L P G LV K+ E D
Sbjct: 114 GEYSLDHARSVHLARMAFETAL------------------DLLAPNGDLVAKVFEGPD 153
>sp|A0B8A1|RLME_METTP Ribosomal RNA large subunit methyltransferase E OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=rlmE PE=3 SV=1
Length = 255
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 95/175 (54%), Gaps = 31/175 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR+A+ GY ARSA+KL QI ++ +I+ GS V+DLG APG WLQVA + +G
Sbjct: 7 DHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQVAREL-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G VVG+D+++++ L + T+ D+ + Q+ A Q V++SD P++S
Sbjct: 62 GIVVGVDLERIE--PLEG---IVTIQGDITKEETLEQIAAALGGQA--DVVISDAAPNLS 114
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
GI D A S++L A+ +A +L+PGG ++K+ +
Sbjct: 115 GIWDVDHARSIDLSRAALRIA------------------KRLLRPGGSFLVKVFQ 151
>sp|A9FQE4|RLME_SORC5 Ribosomal RNA large subunit methyltransferase E OS=Sorangium
cellulosum (strain So ce56) GN=rlmE PE=3 SV=1
Length = 212
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 10/136 (7%)
Query: 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDN 66
PD F + A+ GY ARS FKL +I ++ +L++PG VLDLG APG+W A Q +G
Sbjct: 19 PDAFTKAAKAQGYPARSVFKLEEIDRRVRLLRPGQRVLDLGAAPGSWSMYAAQRIG---A 75
Query: 67 GGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
GG ++ +D+ + + + V D ++L + + +P + V+LSDM P+ S
Sbjct: 76 GGKLLAVDLSPI---TAAFGPQATVVQGDALSLTNEALAQFAP----YDVVLSDMAPATS 128
Query: 127 GITTKDAALSVELGMR 142
G D A S EL MR
Sbjct: 129 GSKIADQARSYELFMR 144
>sp|B0VEE9|RLME_ACIBY Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain AYE) GN=rlmE PE=3 SV=1
Length = 216
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEAVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>sp|A3M851|RLME_ACIBT Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain ATCC 17978 / NCDC KC 755) GN=rlmE PE=3
SV=2
Length = 216
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEAVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>sp|B0VSM4|RLME_ACIBS Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain SDF) GN=rlmE PE=3 SV=1
Length = 216
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEAVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>sp|B2HXD3|RLME_ACIBC Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain ACICU) GN=rlmE PE=3 SV=1
Length = 216
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEAVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>sp|B7I636|RLME_ACIB5 Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain AB0057) GN=rlmE PE=3 SV=1
Length = 216
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEAVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>sp|B7GY18|RLME_ACIB3 Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
baumannii (strain AB307-0294) GN=rlmE PE=3 SV=1
Length = 216
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++YKLIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYKLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ L+ +Q +++SDM P
Sbjct: 81 GLVIASDILPMDALPDVTFLQGDFREEAVFEKLLNI-------LNGRQ--VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPNGQFVVKVFQ 171
>sp|C0QGP2|RLME_DESAH Ribosomal RNA large subunit methyltransferase E OS=Desulfobacterium
autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2)
GN=rlmE PE=3 SV=1
Length = 203
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 92/174 (52%), Gaps = 27/174 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++A+ Y ARS +KL++IQK++++IK G+SVLDLGCAPG+WL A + GP
Sbjct: 16 DHYTQKARDENYPARSVYKLMEIQKRFQVIKKGASVLDLGCAPGSWLIHAAELTGP---S 72
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VGID+K V +L +A T D+ + S A+ + + ++SDM P+ +G
Sbjct: 73 GRAVGIDLKPVDA-ALPPNAIAHT--GDIFEMESTLGEAVG---QDYDAVISDMAPATTG 126
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
DAA S L A+ +A G+L GG+ V K+ +
Sbjct: 127 RKDIDAARSFALCEAALRVAC------------------GLLADGGNFVCKIFQ 162
>sp|Q0A769|RLME_ALHEH Ribosomal RNA large subunit methyltransferase E OS=Alkalilimnicola
ehrlichei (strain MLHE-1) GN=rlmE PE=3 SV=1
Length = 209
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+AFKLL+IQ++ +LI+PG +V+DLG APG W QVA + +G +
Sbjct: 20 DHWVQQAQKAGYRSRAAFKLLEIQEKDRLIRPGMTVVDLGAAPGGWCQVAAELVG---DR 76
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G+V +D+ ++ +P +H + D Q + + + ++LSDM P++S
Sbjct: 77 GAVFALDILPMEALPGVHV------IQGDFTEEAPLQALLQALEGRPVDLVLSDMAPNLS 130
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
G+ D ++ L A+D A VL+PGG + K+ +
Sbjct: 131 GVRVVDQPRAMYLAELALDFA------------------GQVLQPGGDFLTKVFHGE 169
>sp|O27801|RLME_METTH Ribosomal RNA large subunit methyltransferase E
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=rlmE PE=3 SV=1
Length = 211
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 81/143 (56%), Gaps = 13/143 (9%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +YR A++ Y +R+++KLLQ+ +YKLIK G VLDLG APG W QVA +G
Sbjct: 12 DHYYRSAKKENYRSRASYKLLQLNNKYKLIKKGDRVLDLGAAPGGWSQVALDKVG---EE 68
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCPS 124
G VV +D++++K P+ + A + D + + +R L + V++SD PS
Sbjct: 69 GLVVAVDLQRIKGFPAENFRA----IRGDFTDPEVKDKIIRELGGRA---DVVISDAAPS 121
Query: 125 VSGITTKDAALSVELGMRAVDLA 147
+SGI D SV+L +D+A
Sbjct: 122 LSGIRDIDHLRSVDLVENVLDIA 144
>sp|Q6F8N1|RLME_ACIAD Ribosomal RNA large subunit methyltransferase E OS=Acinetobacter
sp. (strain ADP1) GN=rlmE PE=3 SV=1
Length = 216
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F ++AQ+ GY AR+A+KLL+IQ++Y+LIKPG +V+DLG APG+W Q+A + +G +
Sbjct: 24 DPFVKKAQKEGYRARAAYKLLEIQEKYRLIKPGMTVVDLGAAPGSWSQIAGKLVG---SK 80
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ + V L D R + V ++N+ + + +++SDM P
Sbjct: 81 GLVIASDILAMDTLPDVTFLQGDFREEEVFEKLLNILNGRT---------VDIVISDMAP 131
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ SG D + L A+D A VL P G V+K+ +
Sbjct: 132 NTSGNRAVDQPRQIYLCELALDFA------------------QKVLGPDGQFVVKVFQ 171
>sp|Q12WR3|RLME_METBU Ribosomal RNA large subunit methyltransferase E OS=Methanococcoides
burtonii (strain DSM 6242) GN=rlmE PE=3 SV=1
Length = 267
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 93/174 (53%), Gaps = 28/174 (16%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+ GY +R+A+KL QI +++++IK +++DLG APG WL+VA + +G
Sbjct: 7 DTYYWRAKDEGYRSRAAYKLFQINEKHEVIKEDDTIVDLGAAPGGWLEVAKKI-----SG 61
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G +VG+D++++K V+T+ D+ + + + + G V++ D P++SG
Sbjct: 62 GKIVGVDLRRIKEIE-----GVETIKGDITSDETIKKIIELVGEGGADVVICDAAPNLSG 116
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+ D A S++L A++ A +LKP GH ++K+ +
Sbjct: 117 NWSLDHARSIDLTTSALECA------------------KKILKPKGHFIVKVFQ 152
>sp|Q1H387|RLME_METFK Ribosomal RNA large subunit methyltransferase E OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rlmE
PE=3 SV=1
Length = 207
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 26/173 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + AQR GY AR+A+KLL+I + +LIKPG +++DLG APG+W QVA Q L
Sbjct: 17 DEFVKRAQRDGYRARAAYKLLEIDDKDQLIKPGMTIVDLGSAPGSWSQVAVQRLA---GQ 73
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ +D+ +++P + V+ + D V S K ++++DM P++SG
Sbjct: 74 GRVIALDI--LEMPPIPG---VEFIQGDFREEEILLVLEKSLNGKPVDLVIADMAPNISG 128
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180
I+ D A + L V+LAL LKPGG+ ++K+
Sbjct: 129 ISDVDQARAAYL----VELAL--------------EFSREWLKPGGNFLVKVF 163
>sp|A6UUK5|RLME_META3 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rlmE PE=3
SV=1
Length = 269
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+Y+ A++ Y +R+++KLLQ+ +++++I G +V+DLGCAPG WLQ + +G
Sbjct: 15 DFYYKLAKQNHYRSRASYKLLQLNEKFEIIYEGDNVVDLGCAPGGWLQASYDLVGE---D 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G V+G+D++KVK + + + D+ + N++ L P + V++ D P++S
Sbjct: 72 GFVIGVDLQKVKPLR---EENIVAIQGDMTKKETINKIIDLMPSKA--DVVICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAV 144
G+ D + S+EL + A+
Sbjct: 127 GVWEVDHSRSIELSLMAL 144
>sp|A7H9A5|RLME_ANADF Ribosomal RNA large subunit methyltransferase E OS=Anaeromyxobacter
sp. (strain Fw109-5) GN=rlmE PE=3 SV=1
Length = 276
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 84/141 (59%), Gaps = 9/141 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+YR+A++ G ARSAFK+ +I ++++L++ G +VLDLG APG +LQ+ +G
Sbjct: 9 DFYYRKAKKEGLRARSAFKIDEILRRHRLLRKGQAVLDLGAAPGGFLQILADEVG---ET 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G VG+D++ V+ V+T D+++ + +Q+R L F ++ SDM P
Sbjct: 66 GVAVGVDLEPVRRLGKPW---VKTAIVDLLSPGALDQIRTLHAGP--FQLVTSDMAPKTI 120
Query: 127 GITTKDAALSVELGMRAVDLA 147
G+ D A S+EL A+D+A
Sbjct: 121 GVKITDEARSLELVRMALDVA 141
>sp|A9IMA1|RLME_BART1 Ribosomal RNA large subunit methyltransferase E OS=Bartonella
tribocorum (strain CIP 105476 / IBS 506) GN=rlmE PE=3
SV=1
Length = 242
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 32/178 (17%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +++ GY +R+A+KL++I ++YK +K G V+DLG APG W QVA + +G +
Sbjct: 45 DPYVHQSKVDGYRSRAAYKLIEINERYKFLKKGQKVIDLGAAPGGWCQVAERIVGSSNEK 104
Query: 68 GSVVGIDVKKVKVPSLHCD--ARVQTVSADVIN--LPSNQVRALSPKQKGFSVILSDMCP 123
SVVGID LH D RV + D ++ P + L K V+LSDM
Sbjct: 105 PSVVGIDY-------LHVDPLPRVAMLEMDFLHADAPQKLIETLGTKP---DVVLSDMAA 154
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
+G D ++ L A D AL VLKPGGH + K +
Sbjct: 155 PTTGHRQTDHLRTIYLCEVAADFAL------------------SVLKPGGHFLAKAFQ 194
>sp|C6C068|RLME_DESAD Ribosomal RNA large subunit methyltransferase E OS=Desulfovibrio
salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 /
VKM B-1763) GN=rlmE PE=3 SV=1
Length = 199
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 25/179 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +++ A++ Y ARS +KL ++ K++K+ G +V+DLG APG+W A + +G +
Sbjct: 6 DHYFKRAKKENYPARSVYKLQELDKRFKVFAKGQNVMDLGAAPGSWTLFAAKKVG---DT 62
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G V+ +D++ +Q ADV S ++ A KQ + +I+SDM P +G
Sbjct: 63 GRVLAVDIQSTDTAFPDNATFLQ---ADVFE-DSPELLAAMDKQLPYDLIISDMAPKTTG 118
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDAQ 186
+ D A S+EL RA D+ P+ LK GGH ++K+ + D +
Sbjct: 119 VKFADQANSLELCERARDIV--PSR----------------LKQGGHFIVKIFDGPDVK 159
>sp|A5UKI5|RLME_METS3 Ribosomal RNA large subunit methyltransferase E
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=rlmE PE=3 SV=1
Length = 210
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 37/180 (20%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y++A++ Y +R+++K+ Q+ K++KLIK G +V+DLG APG W QVA + +G
Sbjct: 12 DPYYKKAKKEDYRSRASYKIKQLDKKFKLIKEGDTVVDLGAAPGGWSQVALEKVG---EE 68
Query: 68 GSVVGIDVKKVK------VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121
G V+G+D+ ++K + D V V+NL + + V++SD
Sbjct: 69 GLVIGVDLNRIKPFPEENFHGIRGDFTTTEVQEKVMNLIGGKAK----------VVISDA 118
Query: 122 CPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
PS+ GI D S++L + +A +L+P G+LV+K+ +
Sbjct: 119 SPSLCGIKNIDQLRSIDLTNTVIGIA------------------DNILEPKGNLVMKVFQ 160
>sp|A4FYM2|RLME_METM5 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=rlmE PE=3
SV=1
Length = 258
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ Y +R+ +KL Q+ +++ LIK + V+DLGCAPG WLQ A +G +
Sbjct: 15 DHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVG---DK 71
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID++ VK +P + A ++ + I Q R L P++ VI+ D P++S
Sbjct: 72 GFIVGIDLQTVKPLPYENVIAIKGDMTKEEI---LKQARDLLPEKP--DVIICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D A S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 127 GVWDVDHARSLELTTMAL------------------MTATKMLKKGGNFVVKVFQ 163
>sp|Q1QKB6|RLME_NITHX Ribosomal RNA large subunit methyltransferase E OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=rlmE PE=3 SV=1
Length = 228
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 28/177 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R G+ +R+A+KL+++ +Y +KPG +V+DLG APG W QVA + +G +D
Sbjct: 33 DPYVAQAKRDGWRSRAAYKLIEMDDKYHFLKPGLAVVDLGAAPGGWSQVAARRVGAVDGK 92
Query: 68 GSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSV 125
G VV ID+ +++P + AR+ + AD P + + + G ++LSDM +
Sbjct: 93 GKVVAIDL--LEMPEIVGVTFARLDFLDADA---PEKLIAMM---EGGADIVLSDMAANT 144
Query: 126 SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
+G D +R + L AA A+ VL+PGG + K+ +S
Sbjct: 145 TGHRKTDQ-------LRIIGLVESAAAFAAD-----------VLRPGGTFIAKVFQS 183
>sp|A9A6B9|RLME_METM6 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=rlmE PE=3
SV=1
Length = 258
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ Y +R+ +KL Q+ +++ LIK + V+DLGCAPG WLQ A +G +
Sbjct: 15 DHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVG---DK 71
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID++ VK +P + A ++ + I Q R L P++ VI+ D P++S
Sbjct: 72 GFIVGIDLQTVKPLPYENVIAIKGDMTKEEI---LKQARDLLPEKP--DVIICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D A S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 127 GVWDVDHARSLELTTMAL------------------MTATKMLKRGGNFVVKVFQ 163
>sp|Q3KI92|RLME_PSEPF Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
fluorescens (strain Pf0-1) GN=rlmE PE=3 SV=1
Length = 209
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ++YKLI+PG +V+DLG APG W QV + +G
Sbjct: 17 DPYVKQAQKDGYRSRASYKLLEIQEKYKLIRPGMNVVDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V + D V A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFIQGDFTEDAVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG D ++ L A+DLA +LKPGG+ VIK+ +
Sbjct: 124 PNMSGTPEVDMPKAMFLCELALDLA------------------ERILKPGGNFVIKIFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>sp|Q1D841|RLME_MYXXD Ribosomal RNA large subunit methyltransferase E OS=Myxococcus
xanthus (strain DK 1622) GN=rlmE PE=3 SV=1
Length = 213
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 82/141 (58%), Gaps = 9/141 (6%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D ++++A++ G ARSAFK+ ++ K++ ++K G VLDLG APG +LQ+ ++GP
Sbjct: 16 DHYFQKAKQEGLRARSAFKVDELIKRFPMVKKGHVVLDLGAAPGGFLQILADAVGP---K 72
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKG-FSVILSDMCPSVS 126
G V+G+D+ ++ S VQT DV L + L+ G F ++SDM P S
Sbjct: 73 GRVIGVDIVAIRPFSQPF---VQTAVLDV--LADDFDAKLTELHAGPFDAVISDMAPKTS 127
Query: 127 GITTKDAALSVELGMRAVDLA 147
GI D A S+ L +A++LA
Sbjct: 128 GIKATDEARSLRLAGKALELA 148
>sp|Q2IPT3|RLME_ANADE Ribosomal RNA large subunit methyltransferase E OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=rlmE PE=3 SV=1
Length = 267
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 27/178 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
DF+YR+A++ G ARSAFK+ +I +++L+ G +VLDLG APG +LQ+ +++G
Sbjct: 9 DFYYRKAKKQGLRARSAFKIEEILHRHRLLGRGDAVLDLGAAPGGFLQILAEAVG---EK 65
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G VG+D++ ++ V+T D++ + +++R L + F ++ SDM P
Sbjct: 66 GVAVGVDLEPIRNLGKRW---VRTAIVDLLAPDALDKIRLLHDGR--FRLVTSDMAPKTI 120
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184
GI D A S+EL V +AL S VL PGG V K+ D
Sbjct: 121 GIKVTDEARSLEL----VRMAL--------------SVAEQVLVPGGAFVAKVFMGGD 160
>sp|Q6LZL8|RLME_METMP Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain S2 / LL) GN=rlmE PE=3 SV=1
Length = 258
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A+R Y +R+ +KL Q+ +++ LIK + V+DLGCAPG WLQ A +G
Sbjct: 15 DHYYNLAKRRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVG---ED 71
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID++ VK P H + + + D+ Q + L P++ VI+ D P++S
Sbjct: 72 GFIVGIDLQTVK-PLPHDN--IIAIKGDMTKEEILKQAKDLLPEKP--DVIICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 127 GVWDVDHVRSLELTTMAL------------------MTATKMLKKGGNFVVKVFQ 163
>sp|A6VJR0|RLME_METM7 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=rlmE PE=3
SV=1
Length = 258
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 27/175 (15%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D +Y A++ Y +R+ +KL Q+ +++ LIK + V+DLGCAPG WLQ A +G
Sbjct: 15 DHYYNLAKKRNYRSRATYKLFQLNEKFNLIKERNVVVDLGCAPGGWLQAARDIVG---EK 71
Query: 68 GSVVGIDVKKVK-VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G +VGID++ VK +P + A ++ + I Q + L P++ VI+ D P++S
Sbjct: 72 GFIVGIDLQTVKPLPYENVIAIKGDMTKEEI---LKQAKDLLPEKP--DVIICDASPNIS 126
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
G+ D A S+EL A+ T + +LK GG+ V+K+ +
Sbjct: 127 GVWDVDHARSLELTTMAL------------------MTATKMLKKGGNFVVKVFQ 163
>sp|Q7NRI3|RLME_CHRVO Ribosomal RNA large subunit methyltransferase E OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=rlmE PE=3 SV=1
Length = 205
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 34/183 (18%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + AQ+ GY AR+A+KLL+I + KLI+PG+ + DLG PG+W QVA + +G
Sbjct: 17 DQYVHMAQKDGYRARAAYKLLEINDKDKLIRPGTVLADLGSTPGSWSQVAARIVG---EK 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V +D+ + V + D R + V + L RAL +++SDM P
Sbjct: 74 GKVFALDILDMDPVPGVDFIQGDFREEAVLREFEQLLDG--RAL-------DLVISDMAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183
++SG++ D A S L A++ A LKPGGH ++K+ +
Sbjct: 125 NMSGMSAIDQARSFLLCELALEFA------------------RDHLKPGGHFLVKVFQGS 166
Query: 184 DAQ 186
D Q
Sbjct: 167 DFQ 169
>sp|A5CX75|RLME_VESOH Ribosomal RNA large subunit methyltransferase E OS=Vesicomyosocius
okutanii subsp. Calyptogena okutanii (strain HA) GN=rlmE
PE=3 SV=1
Length = 210
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 34/178 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D F + A++ GY +R+ +KL+++ + K IKPG+ V+DLG APG+W Q+A +++G
Sbjct: 17 DKFVKNAKKAGYRSRAVYKLIEVINKEKFIKPGNKVIDLGAAPGSWSQMAIKAVG---KS 73
Query: 68 GSVVGIDVKKVK----VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCP 123
G V+ D+ +K + L D +V ++NL NQ +V+LSD+ P
Sbjct: 74 GQVIANDILNIKPIDGIDFLQGDFTENSVYEALLNLTMNQ---------KVNVVLSDIAP 124
Query: 124 SVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181
++SG + D S+ L A+D+A+ L P G+ +K+ +
Sbjct: 125 NISGQPSVDIPKSMYLCELALDIAIKS------------------LTPSGYFFVKVFQ 164
>sp|B3QFD2|RLME_RHOPT Ribosomal RNA large subunit methyltransferase E OS=Rhodopseudomonas
palustris (strain TIE-1) GN=rlmE PE=3 SV=1
Length = 237
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KL +I +++L+K G +V+DLG APG W QVA + +G D
Sbjct: 33 DPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQVAAKKVGAADGR 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV ID+ ++ +VP V D ++ PS R G +++SDM + +
Sbjct: 93 GKVVAIDLLEMGEVPG------VTFAQLDFLD-PSAPERLREMLGGGADIVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L A AS VLKPGG + K+ +S
Sbjct: 146 GHRKTDQ-------LRIVGLVETAAMFASE-----------VLKPGGTFLAKVFQS 183
>sp|Q6N7Q9|RLME_RHOPA Ribosomal RNA large subunit methyltransferase E OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=rlmE PE=3
SV=1
Length = 237
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 26/176 (14%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KL +I +++L+K G +V+DLG APG W QVA + +G D
Sbjct: 33 DPYVAQAKRDGYRSRAAYKLTEIDDKFRLLKSGMAVVDLGAAPGGWSQVAAKKVGAADGR 92
Query: 68 GSVVGIDVKKV-KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVS 126
G VV ID+ ++ +VP V D ++ PS R G +++SDM + +
Sbjct: 93 GKVVAIDLLEMGEVPG------VTFAQLDFLD-PSAPERLREMLGGGADIVMSDMAANTT 145
Query: 127 GITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
G D +R V L A AS VLKPGG + K+ +S
Sbjct: 146 GHRKTDQ-------LRIVGLVETAAMFASE-----------VLKPGGTFLAKVFQS 183
>sp|Q07LH9|RLME_RHOP5 Ribosomal RNA large subunit methyltransferase E OS=Rhodopseudomonas
palustris (strain BisA53) GN=rlmE PE=3 SV=1
Length = 235
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 24/175 (13%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + +A+R GY +R+A+KLL+I ++ +KPG+SV+DLG APG W Q+A + +G +
Sbjct: 33 DPYVAQAKRDGYRSRAAYKLLEIDDKHHFLKPGASVVDLGAAPGGWSQIAAKRVGATEGK 92
Query: 68 GSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSG 127
G VV ID+ +++P + V D ++ P+ + L+ V++SDM + +G
Sbjct: 93 GKVVAIDL--LEMPEI---VGVTFAQLDFLS-PAAPEKLLAMIGGRVDVVMSDMAANTTG 146
Query: 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
D +R V L AA A VLKPGG V K+ +S
Sbjct: 147 HRKTDQ-------LRIVGLVEDAAAFA-----------CDVLKPGGTFVAKVFQS 183
>sp|C3K267|RLME_PSEFS Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas
fluorescens (strain SBW25) GN=rlmE PE=3 SV=1
Length = 216
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 36/181 (19%)
Query: 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG 67
D + ++AQ+ GY +R+++KLL+IQ + KLI+PG SV+DLG APG W QV + +G
Sbjct: 17 DPYVKKAQKDGYRSRASYKLLEIQDKDKLIRPGMSVIDLGAAPGGWSQVTSRLIG---GQ 73
Query: 68 GSVVGIDVKKV----KVPSLHCDARVQTVSADVINLPSN-QVRALSPKQKGFSVILSDMC 122
G ++ D+ ++ V +H D TV A ++ N QV +++SDM
Sbjct: 74 GRLIASDILEMDSIPDVTFVHGDFTQDTVLAQILEAVGNSQV----------DLVISDMA 123
Query: 123 PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182
P++SG+ D ++ L A+DLA VL+PGG ++K+ +
Sbjct: 124 PNMSGLPAVDMPRAMFLCELALDLA------------------GRVLRPGGDFLVKVFQG 165
Query: 183 Q 183
+
Sbjct: 166 E 166
>sp|A9N8M5|RLME_COXBR Ribosomal RNA large subunit methyltransferase E OS=Coxiella
burnetii (strain RSA 331 / Henzerling II) GN=rlmE PE=3
SV=1
Length = 212
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 14/147 (9%)
Query: 6 APDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD 65
A D + + A++ GY +R+A+KLL+I ++YKL KP +V+DLG APG W QVA +GP
Sbjct: 12 AKDPYVKRAKKEGYPSRAAYKLLEIHQKYKLFKPSMNVIDLGAAPGGWSQVAKDLVGP-- 69
Query: 66 NGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQK---GFSVILSD 120
G V+ ID+ +P + V + D N P NQ+ A+ K+ +++SD
Sbjct: 70 -KGVVIAIDL----LP-MQSMLDVIFIQGD-FNEPEIFNQLEAIVAKKTLTGQVDLVISD 122
Query: 121 MCPSVSGITTKDAALSVELGMRAVDLA 147
M P++SGI D + S+ L A D A
Sbjct: 123 MAPNISGIKNVDQSRSLHLVELAWDCA 149
>sp|Q5UYP9|RLME_HALMA Ribosomal RNA large subunit methyltransferase E OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=rlmE PE=3 SV=1
Length = 263
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 32/190 (16%)
Query: 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQS 60
MSG D +Y A++ GY ARSA+KL Q+ L+ G +V+DLG APG W+QVA +
Sbjct: 1 MSG---KDDYYNRAKQEGYRARSAYKLQQLDDTAGLLGEGRTVVDLGAAPGGWMQVAAER 57
Query: 61 LGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVI-NLPSNQVRALSPKQKG----F 114
+G G++VG+D + + L + V+ V D+ + +++R + + G
Sbjct: 58 IGER---GTLVGVD--RQTIDDLEDPEPTVEYVRGDMTEDSTKDEIREIVGESDGSGGPV 112
Query: 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174
V++SDM P+++G D A SV L +A ++A + +L GG
Sbjct: 113 DVVISDMAPNMTGQYDLDHARSVHLVRQAFEVA------------------TDLLDAGGD 154
Query: 175 LVIKLLESQD 184
K+ + QD
Sbjct: 155 FCAKVFDGQD 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,156,933
Number of Sequences: 539616
Number of extensions: 2505734
Number of successful extensions: 8146
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 7188
Number of HSP's gapped (non-prelim): 577
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)