Query 038391
Match_columns 186
No_of_seqs 114 out of 1650
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:31:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0293 FtsJ 23S rRNA methylas 99.9 6.3E-25 1.4E-29 175.7 15.7 155 4-185 10-165 (205)
2 KOG4589 Cell division protein 99.9 4.9E-24 1.1E-28 167.3 12.7 154 4-184 34-189 (232)
3 PRK11188 rrmJ 23S rRNA methylt 99.9 1.9E-23 4E-28 168.8 14.6 154 5-185 17-171 (209)
4 KOG1099 SAM-dependent methyltr 99.9 1.5E-22 3.2E-27 163.4 10.5 158 1-184 3-168 (294)
5 TIGR00438 rrmJ cell division p 99.8 1.9E-19 4.1E-24 142.5 16.6 150 8-184 1-151 (188)
6 KOG1098 Putative SAM-dependent 99.8 2.7E-20 5.8E-25 166.8 9.1 158 1-185 6-164 (780)
7 PF01728 FtsJ: FtsJ-like methy 99.8 4.7E-20 1E-24 145.0 8.2 141 19-185 1-145 (181)
8 COG2226 UbiE Methylase involve 99.7 2.6E-16 5.6E-21 129.3 10.6 136 8-184 15-161 (238)
9 PF01209 Ubie_methyltran: ubiE 99.6 9E-17 2E-21 131.9 4.5 140 5-184 8-158 (233)
10 PLN02233 ubiquinone biosynthes 99.6 3.3E-15 7.2E-20 124.4 10.5 108 36-183 70-186 (261)
11 PF12847 Methyltransf_18: Meth 99.6 2.1E-15 4.6E-20 108.7 7.2 103 39-179 1-111 (112)
12 PRK10258 biotin biosynthesis p 99.5 3.9E-14 8.4E-19 116.6 10.0 103 38-183 41-144 (251)
13 PLN02244 tocopherol O-methyltr 99.5 9.2E-14 2E-18 119.8 11.1 102 38-181 117-225 (340)
14 TIGR02752 MenG_heptapren 2-hep 99.5 1.3E-13 2.8E-18 111.9 11.4 107 36-182 42-154 (231)
15 PRK14103 trans-aconitate 2-met 99.5 6.4E-14 1.4E-18 115.8 8.9 102 37-181 27-128 (255)
16 PTZ00146 fibrillarin; Provisio 99.5 7.7E-14 1.7E-18 117.6 9.1 122 19-179 107-237 (293)
17 PRK14903 16S rRNA methyltransf 99.5 1.4E-13 3E-18 122.2 10.7 117 37-181 235-368 (431)
18 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.4E-13 3E-18 114.8 9.6 115 37-180 69-200 (264)
19 PRK14901 16S rRNA methyltransf 99.5 2.2E-13 4.8E-18 120.9 9.8 118 37-179 250-384 (434)
20 PRK01683 trans-aconitate 2-met 99.5 4E-13 8.6E-18 110.9 10.6 103 37-181 29-132 (258)
21 PF13847 Methyltransf_31: Meth 99.5 1.3E-13 2.8E-18 105.3 6.5 105 38-181 2-112 (152)
22 PRK14904 16S rRNA methyltransf 99.4 6.3E-13 1.4E-17 118.4 10.8 115 37-181 248-379 (445)
23 PRK11036 putative S-adenosyl-L 99.4 6.7E-13 1.5E-17 109.8 9.8 112 27-182 34-152 (255)
24 PF08241 Methyltransf_11: Meth 99.4 1.4E-13 3.1E-18 95.3 4.6 92 44-177 1-95 (95)
25 COG4106 Tam Trans-aconitate me 99.4 1.2E-13 2.7E-18 111.1 4.8 118 19-182 14-132 (257)
26 PRK04266 fibrillarin; Provisio 99.4 1.6E-12 3.5E-17 106.3 10.3 104 35-178 68-175 (226)
27 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.8E-13 4E-18 111.7 4.6 105 39-181 59-163 (243)
28 PRK10901 16S rRNA methyltransf 99.4 1.2E-12 2.6E-17 116.1 10.1 116 37-180 242-373 (427)
29 TIGR00563 rsmB ribosomal RNA s 99.4 1.4E-12 3.1E-17 115.5 10.6 118 37-182 236-371 (426)
30 TIGR02469 CbiT precorrin-6Y C5 99.4 2.8E-12 6.1E-17 93.4 10.2 101 37-180 17-123 (124)
31 PLN02396 hexaprenyldihydroxybe 99.4 1E-12 2.2E-17 112.7 9.0 102 38-182 130-238 (322)
32 PRK11933 yebU rRNA (cytosine-C 99.4 1.9E-13 4.1E-18 122.3 4.6 125 37-179 111-242 (470)
33 PF13489 Methyltransf_23: Meth 99.4 6.1E-13 1.3E-17 101.0 6.4 100 37-183 20-119 (161)
34 PF05175 MTS: Methyltransferas 99.4 4.9E-13 1.1E-17 104.5 5.8 104 39-179 31-140 (170)
35 PRK14902 16S rRNA methyltransf 99.4 2.2E-12 4.8E-17 114.8 10.7 115 37-179 248-379 (444)
36 PTZ00098 phosphoethanolamine N 99.4 1.9E-12 4E-17 108.0 9.3 105 37-181 50-158 (263)
37 PRK11873 arsM arsenite S-adeno 99.4 1.7E-12 3.8E-17 108.0 9.0 105 36-180 74-184 (272)
38 PRK00107 gidB 16S rRNA methylt 99.4 3.3E-12 7E-17 101.7 9.8 103 34-182 40-148 (187)
39 COG4123 Predicted O-methyltran 99.4 1.5E-12 3.2E-17 107.4 8.0 121 32-180 37-171 (248)
40 PRK11207 tellurite resistance 99.4 2.5E-12 5.3E-17 102.8 8.7 104 38-183 29-139 (197)
41 TIGR02072 BioC biotin biosynth 99.4 2.5E-12 5.3E-17 103.7 8.8 118 24-183 20-139 (240)
42 PLN02336 phosphoethanolamine N 99.4 3.8E-12 8.1E-17 113.9 10.6 109 30-181 258-371 (475)
43 PRK15068 tRNA mo(5)U34 methylt 99.4 3.8E-12 8.2E-17 109.1 10.0 114 23-180 107-227 (322)
44 TIGR00452 methyltransferase, p 99.4 4.8E-12 1E-16 108.2 10.0 117 21-181 104-227 (314)
45 PRK13944 protein-L-isoaspartat 99.3 5.6E-12 1.2E-16 101.3 9.5 75 36-121 69-150 (205)
46 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.9E-12 4E-17 105.0 6.7 114 27-181 23-154 (213)
47 PRK15451 tRNA cmo(5)U34 methyl 99.3 4.5E-12 9.8E-17 104.6 9.1 104 37-179 54-164 (247)
48 TIGR01177 conserved hypothetic 99.3 4.7E-12 1E-16 108.6 9.3 116 35-184 178-299 (329)
49 COG0144 Sun tRNA and rRNA cyto 99.3 8.2E-13 1.8E-17 114.6 4.6 119 36-179 153-288 (355)
50 TIGR00080 pimt protein-L-isoas 99.3 4.8E-12 1E-16 102.3 8.6 75 36-121 74-154 (215)
51 TIGR00477 tehB tellurite resis 99.3 3.6E-12 7.8E-17 101.7 7.6 100 39-180 30-134 (195)
52 PF13659 Methyltransf_26: Meth 99.3 8.7E-13 1.9E-17 95.8 3.6 109 40-180 1-116 (117)
53 TIGR00138 gidB 16S rRNA methyl 99.3 6.3E-12 1.4E-16 99.5 8.8 94 40-179 43-142 (181)
54 PRK15001 SAM-dependent 23S rib 99.3 3.9E-12 8.4E-17 111.1 8.2 103 40-179 229-340 (378)
55 PRK13942 protein-L-isoaspartat 99.3 6.5E-12 1.4E-16 101.6 8.7 76 35-121 72-153 (212)
56 PF08242 Methyltransf_12: Meth 99.3 4.6E-12 9.9E-17 89.8 6.4 93 44-175 1-99 (99)
57 TIGR03533 L3_gln_methyl protei 99.3 2.1E-11 4.6E-16 102.8 11.4 113 38-181 120-253 (284)
58 PF13649 Methyltransf_25: Meth 99.3 9.4E-13 2E-17 93.9 2.6 96 43-173 1-101 (101)
59 COG2230 Cfa Cyclopropane fatty 99.3 7.9E-12 1.7E-16 104.9 8.5 115 26-184 60-181 (283)
60 PF03848 TehB: Tellurite resis 99.3 8.7E-12 1.9E-16 99.5 7.6 106 32-180 24-134 (192)
61 PF02353 CMAS: Mycolic acid cy 99.3 9.2E-12 2E-16 104.5 7.8 104 36-182 59-169 (273)
62 PRK05785 hypothetical protein; 99.3 1.6E-11 3.4E-16 100.3 8.8 86 38-149 50-135 (226)
63 TIGR00740 methyltransferase, p 99.3 1.4E-11 3.1E-16 100.7 8.4 105 37-180 51-162 (239)
64 PRK09489 rsmC 16S ribosomal RN 99.3 1.9E-11 4.2E-16 105.6 9.3 102 40-179 197-303 (342)
65 PRK00121 trmB tRNA (guanine-N( 99.3 5.3E-12 1.1E-16 101.3 5.4 109 39-179 40-156 (202)
66 PRK08317 hypothetical protein; 99.3 3.4E-11 7.4E-16 96.8 10.1 104 37-180 17-125 (241)
67 TIGR00537 hemK_rel_arch HemK-r 99.3 2.3E-11 5E-16 95.4 8.8 110 38-181 18-142 (179)
68 TIGR03587 Pse_Me-ase pseudamin 99.3 2.9E-11 6.4E-16 97.3 9.4 107 35-183 39-146 (204)
69 PRK14967 putative methyltransf 99.3 2.5E-11 5.4E-16 98.6 8.8 120 26-178 24-158 (223)
70 PRK11088 rrmA 23S rRNA methylt 99.3 1.9E-11 4.2E-16 102.1 8.1 99 38-181 84-183 (272)
71 PRK00377 cbiT cobalt-precorrin 99.3 5.3E-11 1.2E-15 95.0 10.3 102 36-179 37-145 (198)
72 PRK00216 ubiE ubiquinone/menaq 99.2 9.8E-11 2.1E-15 94.5 11.8 106 37-182 49-161 (239)
73 PRK12335 tellurite resistance 99.2 2.2E-11 4.8E-16 102.6 8.2 99 39-179 120-223 (287)
74 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 9.5E-11 2.1E-15 93.7 11.3 106 37-182 37-146 (223)
75 PRK11705 cyclopropane fatty ac 99.2 3.9E-11 8.5E-16 105.1 9.2 102 37-181 165-269 (383)
76 PRK08287 cobalt-precorrin-6Y C 99.2 7.3E-11 1.6E-15 93.2 9.8 98 37-180 29-132 (187)
77 PRK14966 unknown domain/N5-glu 99.2 4.2E-11 9.1E-16 105.5 9.1 114 37-179 249-381 (423)
78 PRK09328 N5-glutamine S-adenos 99.2 8.5E-11 1.8E-15 97.6 10.5 112 37-179 106-238 (275)
79 TIGR00536 hemK_fam HemK family 99.2 8.7E-11 1.9E-15 98.9 10.6 111 41-182 116-247 (284)
80 TIGR00091 tRNA (guanine-N(7)-) 99.2 1E-11 2.2E-16 99.0 4.7 112 39-181 16-134 (194)
81 PRK13255 thiopurine S-methyltr 99.2 5.8E-11 1.3E-15 96.6 8.9 103 37-179 35-155 (218)
82 TIGR03704 PrmC_rel_meth putati 99.2 7.2E-11 1.6E-15 97.9 9.5 114 40-181 87-218 (251)
83 PRK11805 N5-glutamine S-adenos 99.2 1.2E-10 2.6E-15 99.3 11.0 110 41-181 135-265 (307)
84 smart00828 PKS_MT Methyltransf 99.2 3.5E-11 7.6E-16 97.1 7.3 99 41-181 1-106 (224)
85 KOG1270 Methyltransferases [Co 99.2 1.9E-11 4.1E-16 101.0 5.5 96 40-181 90-197 (282)
86 KOG1540 Ubiquinone biosynthesi 99.2 8.4E-11 1.8E-15 96.9 9.3 110 37-183 98-218 (296)
87 PLN02490 MPBQ/MSBQ methyltrans 99.2 4.5E-11 9.8E-16 103.1 7.7 101 38-179 112-215 (340)
88 PRK06922 hypothetical protein; 99.2 7.2E-11 1.6E-15 108.6 8.9 114 38-179 417-537 (677)
89 PRK06202 hypothetical protein; 99.2 2.8E-10 6E-15 92.8 11.3 95 38-149 59-156 (232)
90 PRK04457 spermidine synthase; 99.2 8.3E-11 1.8E-15 98.1 8.3 110 38-183 65-181 (262)
91 TIGR03534 RF_mod_PrmC protein- 99.2 1.1E-10 2.3E-15 95.4 8.8 110 39-179 87-217 (251)
92 smart00138 MeTrc Methyltransfe 99.2 1.1E-10 2.3E-15 97.5 8.2 107 39-180 99-243 (264)
93 TIGR00406 prmA ribosomal prote 99.1 2.3E-10 5E-15 96.6 9.8 99 37-182 157-262 (288)
94 COG2813 RsmC 16S RNA G1207 met 99.1 2.6E-10 5.7E-15 96.2 9.3 105 38-180 157-267 (300)
95 PRK00312 pcm protein-L-isoaspa 99.1 2.9E-10 6.3E-15 91.4 9.3 74 34-121 73-152 (212)
96 PF05401 NodS: Nodulation prot 99.1 6.8E-11 1.5E-15 94.3 5.0 101 40-181 44-148 (201)
97 PLN02336 phosphoethanolamine N 99.1 2E-10 4.4E-15 102.7 8.6 103 38-179 36-142 (475)
98 PLN03075 nicotianamine synthas 99.1 5.3E-10 1.1E-14 94.7 10.5 105 39-182 123-236 (296)
99 PRK01544 bifunctional N5-gluta 99.1 2.2E-10 4.9E-15 103.7 8.7 109 40-179 139-269 (506)
100 PRK13943 protein-L-isoaspartat 99.1 4.4E-10 9.5E-15 96.4 9.5 74 36-120 77-156 (322)
101 PRK07402 precorrin-6B methylas 99.1 5.6E-10 1.2E-14 88.8 9.2 103 36-182 37-145 (196)
102 KOG1975 mRNA cap methyltransfe 99.1 7.2E-11 1.6E-15 100.1 4.1 114 38-183 116-241 (389)
103 PRK11783 rlmL 23S rRNA m(2)G24 99.1 2.8E-10 6.1E-15 106.6 8.3 112 38-179 537-656 (702)
104 COG2264 PrmA Ribosomal protein 99.1 9.4E-11 2E-15 99.2 4.4 102 37-181 160-265 (300)
105 TIGR03438 probable methyltrans 99.1 5E-10 1.1E-14 95.1 8.9 110 37-179 61-177 (301)
106 PF08003 Methyltransf_9: Prote 99.1 5E-10 1.1E-14 94.7 8.6 118 20-181 97-221 (315)
107 PRK14968 putative methyltransf 99.1 8.1E-10 1.8E-14 86.2 9.2 110 38-180 22-149 (188)
108 PF01135 PCMT: Protein-L-isoas 99.1 3.5E-10 7.6E-15 91.5 7.2 82 28-121 62-149 (209)
109 PRK14121 tRNA (guanine-N(7)-)- 99.1 3.3E-10 7.3E-15 99.1 7.4 109 38-179 121-235 (390)
110 PRK00811 spermidine synthase; 99.1 2.4E-10 5.2E-15 96.3 5.9 106 38-179 75-191 (283)
111 COG2242 CobL Precorrin-6B meth 99.1 9.9E-10 2.2E-14 86.9 9.0 101 36-181 31-137 (187)
112 PHA03411 putative methyltransf 99.1 5.1E-10 1.1E-14 93.8 7.7 74 38-124 63-137 (279)
113 PF07021 MetW: Methionine bios 99.0 4.1E-10 8.9E-15 89.5 6.5 76 33-120 7-82 (193)
114 COG2890 HemK Methylase of poly 99.0 1.3E-09 2.8E-14 91.9 9.3 107 42-181 113-240 (280)
115 TIGR00478 tly hemolysin TlyA f 99.0 6.5E-10 1.4E-14 91.1 7.3 76 19-99 55-132 (228)
116 PRK00517 prmA ribosomal protei 99.0 1.2E-09 2.6E-14 90.3 8.8 97 37-182 117-216 (250)
117 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.0 5.9E-10 1.3E-14 94.0 6.7 116 37-179 83-219 (283)
118 PRK05134 bifunctional 3-demeth 99.0 1.4E-09 3E-14 88.4 8.5 103 37-181 46-153 (233)
119 PLN02781 Probable caffeoyl-CoA 99.0 1.1E-09 2.4E-14 89.9 8.0 102 37-177 66-176 (234)
120 PRK15128 23S rRNA m(5)C1962 me 99.0 1.5E-09 3.3E-14 95.5 9.3 112 38-178 219-338 (396)
121 PRK13256 thiopurine S-methyltr 99.0 1.1E-09 2.4E-14 89.5 7.8 142 3-183 5-167 (226)
122 TIGR02716 C20_methyl_CrtF C-20 99.0 2.3E-09 4.9E-14 90.9 9.9 102 37-180 147-255 (306)
123 PF06325 PrmA: Ribosomal prote 99.0 7.5E-10 1.6E-14 93.9 6.9 98 37-183 159-263 (295)
124 TIGR02021 BchM-ChlM magnesium 99.0 2.3E-09 5E-14 86.5 8.6 66 37-119 53-125 (219)
125 KOG1271 Methyltransferases [Ge 99.0 6E-10 1.3E-14 87.9 4.9 110 37-179 64-181 (227)
126 PHA03412 putative methyltransf 99.0 8.5E-10 1.8E-14 90.6 5.9 101 39-149 49-151 (241)
127 PRK10909 rsmD 16S rRNA m(2)G96 99.0 3.9E-09 8.4E-14 84.8 9.3 107 38-184 52-164 (199)
128 KOG1122 tRNA and rRNA cytosine 99.0 2.6E-09 5.6E-14 93.3 8.5 117 37-180 239-372 (460)
129 PLN02672 methionine S-methyltr 99.0 1.9E-09 4E-14 104.4 8.4 113 40-181 119-280 (1082)
130 COG1041 Predicted DNA modifica 99.0 2.4E-09 5.1E-14 92.0 8.0 121 26-180 184-311 (347)
131 smart00650 rADc Ribosomal RNA 98.9 4.4E-09 9.6E-14 81.8 8.9 73 37-123 11-87 (169)
132 PRK11760 putative 23S rRNA C24 98.9 6.4E-09 1.4E-13 89.4 10.5 90 18-122 183-279 (357)
133 COG2518 Pcm Protein-L-isoaspar 98.9 2.3E-09 5E-14 86.3 7.3 78 30-121 63-146 (209)
134 PRK01581 speE spermidine synth 98.9 1.4E-09 3.1E-14 94.3 6.0 106 38-178 149-267 (374)
135 COG1189 Predicted rRNA methyla 98.9 1.5E-08 3.2E-13 82.9 11.1 95 17-122 57-153 (245)
136 PF03291 Pox_MCEL: mRNA cappin 98.9 2.2E-10 4.7E-15 98.6 -0.0 113 39-184 62-191 (331)
137 TIGR01983 UbiG ubiquinone bios 98.9 6.2E-09 1.3E-13 83.8 8.4 101 39-181 45-151 (224)
138 PRK03612 spermidine synthase; 98.9 2.4E-09 5.1E-14 97.3 6.4 107 38-179 296-415 (521)
139 KOG1541 Predicted protein carb 98.9 1.3E-09 2.9E-14 88.3 4.0 110 40-184 51-165 (270)
140 KOG2361 Predicted methyltransf 98.9 1.1E-09 2.3E-14 89.7 3.3 144 7-184 39-188 (264)
141 cd02440 AdoMet_MTases S-adenos 98.9 4.3E-09 9.3E-14 72.2 5.8 97 42-178 1-103 (107)
142 KOG3010 Methyltransferase [Gen 98.9 1.2E-09 2.7E-14 89.3 3.4 115 25-179 21-136 (261)
143 PF01269 Fibrillarin: Fibrilla 98.9 2.8E-09 6E-14 86.6 5.3 125 17-180 46-179 (229)
144 PRK13168 rumA 23S rRNA m(5)U19 98.9 1.2E-08 2.7E-13 90.9 9.6 86 27-122 285-376 (443)
145 PLN02476 O-methyltransferase 98.9 1E-08 2.2E-13 86.3 8.4 103 37-178 116-227 (278)
146 PLN02366 spermidine synthase 98.8 5.2E-09 1.1E-13 89.3 6.0 106 38-178 90-205 (308)
147 PF05724 TPMT: Thiopurine S-me 98.8 7.7E-09 1.7E-13 84.2 6.5 115 26-181 25-157 (218)
148 TIGR02081 metW methionine bios 98.8 6E-09 1.3E-13 82.8 5.4 73 37-121 11-83 (194)
149 PRK03522 rumB 23S rRNA methylu 98.8 1.4E-08 3E-13 86.7 7.8 71 39-122 173-249 (315)
150 PF01170 UPF0020: Putative RNA 98.8 2E-08 4.4E-13 79.3 8.1 108 27-149 16-139 (179)
151 COG2519 GCD14 tRNA(1-methylade 98.8 1.9E-08 4.1E-13 83.0 8.1 109 26-180 81-196 (256)
152 TIGR00417 speE spermidine synt 98.8 7.8E-09 1.7E-13 86.5 5.5 105 38-178 71-185 (270)
153 PF08704 GCD14: tRNA methyltra 98.8 1.2E-08 2.7E-13 84.4 6.4 89 26-122 27-122 (247)
154 PLN02585 magnesium protoporphy 98.8 1.2E-08 2.7E-13 87.3 5.9 65 39-120 144-219 (315)
155 PF01596 Methyltransf_3: O-met 98.8 5.6E-09 1.2E-13 84.3 3.3 105 37-178 43-154 (205)
156 TIGR00095 RNA methyltransferas 98.7 8.7E-08 1.9E-12 76.3 10.1 76 39-123 49-131 (189)
157 PRK07580 Mg-protoporphyrin IX 98.7 4.8E-08 1E-12 78.8 7.8 66 38-120 62-134 (230)
158 PF02390 Methyltransf_4: Putat 98.7 1.9E-08 4.2E-13 80.5 5.1 107 42-179 20-133 (195)
159 TIGR02085 meth_trns_rumB 23S r 98.7 5.5E-08 1.2E-12 85.0 8.3 72 38-122 232-309 (374)
160 PRK14896 ksgA 16S ribosomal RN 98.7 5.4E-08 1.2E-12 80.9 7.7 73 37-125 27-103 (258)
161 COG1889 NOP1 Fibrillarin-like 98.7 6.5E-08 1.4E-12 77.5 7.8 114 26-179 60-180 (231)
162 KOG4300 Predicted methyltransf 98.7 4.3E-08 9.3E-13 78.9 6.7 105 38-183 74-187 (252)
163 KOG2904 Predicted methyltransf 98.7 9.7E-08 2.1E-12 79.7 8.8 86 29-122 139-231 (328)
164 TIGR00479 rumA 23S rRNA (uraci 98.7 8.2E-08 1.8E-12 85.2 9.0 86 27-122 280-371 (431)
165 COG1092 Predicted SAM-dependen 98.7 7.2E-08 1.6E-12 84.6 8.3 110 40-179 218-336 (393)
166 PRK00274 ksgA 16S ribosomal RN 98.7 6.3E-08 1.4E-12 81.1 7.1 74 36-123 39-115 (272)
167 COG4976 Predicted methyltransf 98.7 4.4E-09 9.6E-14 85.7 -0.0 115 26-182 113-228 (287)
168 KOG2899 Predicted methyltransf 98.6 3.4E-08 7.4E-13 81.1 4.8 40 39-82 58-97 (288)
169 COG2521 Predicted archaeal met 98.6 8.5E-08 1.8E-12 78.5 6.7 101 38-176 133-242 (287)
170 KOG1499 Protein arginine N-met 98.6 9.2E-08 2E-12 82.1 7.1 101 37-176 58-164 (346)
171 PTZ00338 dimethyladenosine tra 98.6 9E-08 1.9E-12 81.3 6.6 75 36-126 33-114 (294)
172 COG4122 Predicted O-methyltran 98.6 1E-07 2.2E-12 77.6 6.6 100 37-177 57-164 (219)
173 PLN02589 caffeoyl-CoA O-methyl 98.6 1.2E-07 2.7E-12 78.5 7.2 101 38-177 78-188 (247)
174 PRK04148 hypothetical protein; 98.6 2E-07 4.3E-12 70.4 7.0 100 38-185 15-115 (134)
175 COG0220 Predicted S-adenosylme 98.5 1E-07 2.2E-12 78.1 5.2 108 41-179 50-164 (227)
176 KOG2198 tRNA cytosine-5-methyl 98.5 2.7E-07 5.8E-12 79.8 8.0 126 37-180 153-297 (375)
177 PRK11727 23S rRNA mA1618 methy 98.5 3.5E-07 7.5E-12 78.6 8.7 80 39-126 114-202 (321)
178 PF05148 Methyltransf_8: Hypot 98.5 4E-07 8.7E-12 73.5 8.0 103 26-182 59-161 (219)
179 COG2263 Predicted RNA methylas 98.5 1.5E-07 3.2E-12 74.7 5.2 68 39-122 45-117 (198)
180 PRK00050 16S rRNA m(4)C1402 me 98.5 2.6E-07 5.5E-12 78.5 5.6 86 28-121 9-98 (296)
181 PF03602 Cons_hypoth95: Conser 98.5 2.7E-07 5.9E-12 73.2 5.3 110 38-183 41-157 (183)
182 TIGR00755 ksgA dimethyladenosi 98.5 4.8E-07 1E-11 74.9 7.0 70 37-122 27-103 (253)
183 PF10672 Methyltrans_SAM: S-ad 98.4 1.7E-07 3.7E-12 79.3 4.1 108 38-178 122-237 (286)
184 PF00891 Methyltransf_2: O-met 98.4 1.4E-06 3E-11 71.3 9.1 103 35-180 96-200 (241)
185 PF05185 PRMT5: PRMT5 arginine 98.4 1.5E-07 3.2E-12 84.2 3.2 101 40-176 187-294 (448)
186 COG0742 N6-adenine-specific me 98.4 9.9E-07 2.1E-11 70.1 7.5 76 39-124 43-125 (187)
187 KOG1661 Protein-L-isoaspartate 98.4 4.1E-07 8.9E-12 73.3 5.1 75 37-121 80-170 (237)
188 PF02475 Met_10: Met-10+ like- 98.4 3.6E-07 7.8E-12 73.5 4.5 80 30-122 92-178 (200)
189 KOG1500 Protein arginine N-met 98.4 7.9E-07 1.7E-11 76.4 6.4 69 39-121 177-251 (517)
190 KOG1596 Fibrillarin and relate 98.4 7.2E-07 1.6E-11 73.4 5.9 126 17-181 129-263 (317)
191 COG2265 TrmA SAM-dependent met 98.3 1.1E-06 2.4E-11 78.2 7.1 86 26-122 280-371 (432)
192 PLN02823 spermine synthase 98.3 1.2E-06 2.5E-11 75.8 7.0 106 39-179 103-220 (336)
193 KOG3045 Predicted RNA methylas 98.3 1.8E-06 4E-11 71.7 7.7 100 26-181 167-266 (325)
194 KOG0820 Ribosomal RNA adenine 98.3 2.7E-06 5.8E-11 71.1 7.7 82 28-125 47-135 (315)
195 PF05219 DREV: DREV methyltran 98.3 1.2E-06 2.5E-11 72.9 5.3 96 39-180 94-189 (265)
196 COG0030 KsgA Dimethyladenosine 98.3 2.6E-06 5.6E-11 71.0 7.4 78 36-126 27-108 (259)
197 KOG3191 Predicted N6-DNA-methy 98.3 3.6E-06 7.9E-11 66.6 7.3 113 40-182 44-171 (209)
198 PRK05031 tRNA (uracil-5-)-meth 98.3 1.7E-06 3.7E-11 75.4 6.1 76 41-123 208-298 (362)
199 TIGR02143 trmA_only tRNA (urac 98.2 1.9E-06 4.1E-11 74.9 6.1 76 41-122 199-288 (353)
200 PF02384 N6_Mtase: N-6 DNA Met 98.2 6.5E-07 1.4E-11 75.9 2.7 93 27-125 34-137 (311)
201 PRK01544 bifunctional N5-gluta 98.2 1.9E-06 4.2E-11 78.2 5.8 110 38-179 346-462 (506)
202 PRK10611 chemotaxis methyltran 98.2 4.1E-06 8.8E-11 71.0 6.9 105 41-179 117-262 (287)
203 PLN02232 ubiquinone biosynthes 98.2 8.7E-07 1.9E-11 68.5 2.3 76 71-183 1-85 (160)
204 PF10294 Methyltransf_16: Puta 98.2 1.2E-05 2.6E-10 63.0 8.3 122 20-179 20-156 (173)
205 PF06080 DUF938: Protein of un 98.1 1.4E-05 3.1E-10 64.3 8.3 118 28-178 15-140 (204)
206 PF09445 Methyltransf_15: RNA 98.1 9.7E-07 2.1E-11 68.9 1.3 71 41-122 1-78 (163)
207 KOG1663 O-methyltransferase [S 98.1 1.2E-05 2.7E-10 65.6 7.7 104 38-178 72-182 (237)
208 PRK04338 N(2),N(2)-dimethylgua 98.1 5E-06 1.1E-10 73.1 5.8 95 39-178 57-157 (382)
209 KOG2940 Predicted methyltransf 98.1 1.7E-06 3.6E-11 71.0 2.4 105 39-185 72-180 (325)
210 COG0421 SpeE Spermidine syntha 98.1 1.6E-05 3.6E-10 67.1 8.4 102 41-178 78-189 (282)
211 PF04989 CmcI: Cephalosporin h 98.1 2E-05 4.4E-10 63.5 8.1 111 37-179 31-147 (206)
212 COG2520 Predicted methyltransf 98.1 1E-05 2.2E-10 69.9 6.8 106 32-183 181-293 (341)
213 PF05958 tRNA_U5-meth_tr: tRNA 98.1 3.9E-06 8.5E-11 72.9 4.0 91 26-123 184-288 (352)
214 PF01739 CheR: CheR methyltran 98.0 4.9E-06 1.1E-10 66.8 4.1 105 40-179 32-175 (196)
215 PF01564 Spermine_synth: Sperm 98.0 3.1E-06 6.8E-11 70.1 3.0 106 38-179 75-191 (246)
216 KOG1331 Predicted methyltransf 98.0 5.1E-06 1.1E-10 69.7 3.6 105 37-183 43-147 (293)
217 COG3963 Phospholipid N-methylt 98.0 3.4E-05 7.3E-10 60.4 7.6 79 37-121 46-125 (194)
218 KOG3420 Predicted RNA methylas 98.0 5.1E-06 1.1E-10 63.7 2.7 72 39-123 48-124 (185)
219 PF13578 Methyltransf_24: Meth 97.9 5.2E-06 1.1E-10 59.4 2.2 98 44-178 1-104 (106)
220 PF02527 GidB: rRNA small subu 97.9 2.2E-05 4.9E-10 62.4 6.1 98 34-177 42-146 (184)
221 PRK11783 rlmL 23S rRNA m(2)G24 97.9 7.4E-05 1.6E-09 70.5 10.4 80 37-122 188-312 (702)
222 PF12147 Methyltransf_20: Puta 97.9 7.1E-05 1.5E-09 63.3 8.4 111 40-183 136-255 (311)
223 TIGR00308 TRM1 tRNA(guanine-26 97.9 2.6E-05 5.6E-10 68.4 5.9 95 41-178 46-146 (374)
224 TIGR03439 methyl_EasF probable 97.8 0.00021 4.5E-09 61.5 10.4 81 19-99 54-144 (319)
225 COG0116 Predicted N6-adenine-s 97.8 0.00012 2.6E-09 64.0 8.7 124 27-179 179-344 (381)
226 TIGR02987 met_A_Alw26 type II 97.8 5.8E-05 1.3E-09 68.7 6.6 81 39-122 31-121 (524)
227 KOG2915 tRNA(1-methyladenosine 97.8 0.00015 3.3E-09 60.7 8.4 86 28-122 94-186 (314)
228 PRK00536 speE spermidine synth 97.8 7.7E-05 1.7E-09 62.4 6.6 90 38-178 71-170 (262)
229 PF05891 Methyltransf_PK: AdoM 97.7 1.6E-05 3.6E-10 64.5 2.4 100 40-179 56-161 (218)
230 PF00398 RrnaAD: Ribosomal RNA 97.7 6.6E-05 1.4E-09 62.5 5.5 75 37-122 28-106 (262)
231 TIGR00006 S-adenosyl-methyltra 97.6 0.00016 3.4E-09 61.8 6.1 87 27-121 9-100 (305)
232 KOG2671 Putative RNA methylase 97.6 0.00016 3.4E-09 62.5 5.9 80 30-122 199-293 (421)
233 COG0275 Predicted S-adenosylme 97.5 0.00077 1.7E-08 57.3 9.6 86 29-121 14-104 (314)
234 COG0357 GidB Predicted S-adeno 97.5 0.00022 4.7E-09 58.0 6.1 69 40-121 68-143 (215)
235 COG1352 CheR Methylase of chem 97.5 0.00032 6.9E-09 58.9 7.2 42 40-81 97-143 (268)
236 PF03141 Methyltransf_29: Puta 97.5 5.7E-05 1.2E-09 67.9 2.7 98 42-180 120-220 (506)
237 KOG2187 tRNA uracil-5-methyltr 97.5 0.00016 3.4E-09 65.2 4.6 68 26-99 370-443 (534)
238 COG0500 SmtA SAM-dependent met 97.4 0.00058 1.3E-08 48.2 6.7 99 43-183 52-159 (257)
239 KOG0024 Sorbitol dehydrogenase 97.4 0.00036 7.8E-09 59.8 6.3 108 36-184 166-278 (354)
240 COG4262 Predicted spermidine s 97.4 0.00048 1E-08 60.1 7.0 107 37-179 287-407 (508)
241 PF08123 DOT1: Histone methyla 97.4 0.00035 7.5E-09 56.5 5.5 85 27-121 31-130 (205)
242 PF13679 Methyltransf_32: Meth 97.4 0.00033 7.1E-09 53.0 4.9 45 38-82 24-68 (141)
243 KOG3673 FtsJ-like RNA methyltr 97.4 0.0005 1.1E-08 62.4 6.6 152 8-181 220-402 (845)
244 PF11968 DUF3321: Putative met 97.3 0.00082 1.8E-08 54.6 6.8 128 6-180 11-150 (219)
245 COG4076 Predicted RNA methylas 97.3 0.00025 5.4E-09 56.7 3.6 65 41-121 34-104 (252)
246 PF06962 rRNA_methylase: Putat 97.3 0.00018 3.9E-09 54.8 2.7 90 69-184 1-97 (140)
247 PRK10742 putative methyltransf 97.3 0.00036 7.8E-09 57.9 4.7 75 37-124 84-175 (250)
248 COG4798 Predicted methyltransf 97.2 0.0011 2.4E-08 53.2 6.0 43 34-79 43-85 (238)
249 PF07942 N2227: N2227-like pro 97.1 0.0013 2.8E-08 55.3 6.6 36 38-79 55-90 (270)
250 PF09243 Rsm22: Mitochondrial 97.1 0.0016 3.4E-08 54.8 7.0 52 27-82 22-73 (274)
251 KOG2730 Methylase [General fun 97.1 0.00049 1.1E-08 56.2 3.6 75 39-123 94-175 (263)
252 PF04672 Methyltransf_19: S-ad 97.1 0.0019 4.1E-08 54.2 6.9 114 41-184 70-195 (267)
253 PF03059 NAS: Nicotianamine sy 97.1 0.0047 1E-07 52.1 9.3 103 41-182 122-233 (276)
254 COG1063 Tdh Threonine dehydrog 97.1 0.0022 4.7E-08 55.6 7.4 108 37-184 166-274 (350)
255 COG2933 Predicted SAM-dependen 97.0 0.003 6.5E-08 53.0 7.6 87 20-121 185-278 (358)
256 KOG1269 SAM-dependent methyltr 96.9 0.00052 1.1E-08 60.0 2.4 104 36-181 107-217 (364)
257 TIGR01444 fkbM_fam methyltrans 96.9 0.0012 2.6E-08 49.2 3.8 53 42-98 1-59 (143)
258 COG0286 HsdM Type I restrictio 96.8 0.004 8.8E-08 56.5 6.9 90 32-124 179-275 (489)
259 KOG3178 Hydroxyindole-O-methyl 96.7 0.0047 1E-07 53.4 6.7 105 32-180 170-276 (342)
260 PF01795 Methyltransf_5: MraW 96.7 0.0027 5.9E-08 54.4 4.9 88 27-121 9-101 (310)
261 COG1064 AdhP Zn-dependent alco 96.4 0.0072 1.6E-07 52.4 5.9 98 37-182 164-262 (339)
262 COG3897 Predicted methyltransf 96.4 0.0075 1.6E-07 48.5 5.4 67 37-119 77-148 (218)
263 KOG2360 Proliferation-associat 96.1 0.0048 1E-07 54.1 3.0 85 38-132 212-303 (413)
264 cd00315 Cyt_C5_DNA_methylase C 96.1 0.0088 1.9E-07 50.2 4.5 71 42-124 2-73 (275)
265 PF05971 Methyltransf_10: Prot 96.1 0.014 3E-07 49.8 5.7 76 40-123 103-187 (299)
266 COG5459 Predicted rRNA methyla 96.0 0.0056 1.2E-07 53.3 2.9 49 27-79 102-150 (484)
267 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.9 0.0016 3.5E-08 54.3 -0.5 111 39-182 56-202 (256)
268 KOG2352 Predicted spermine/spe 95.6 0.076 1.7E-06 47.9 8.6 112 37-180 45-162 (482)
269 PF04445 SAM_MT: Putative SAM- 95.5 0.0058 1.3E-07 50.3 1.2 75 36-123 70-161 (234)
270 KOG3987 Uncharacterized conser 95.4 0.0014 3.1E-08 53.2 -2.5 37 40-82 113-149 (288)
271 PF00145 DNA_methylase: C-5 cy 95.3 0.0045 9.7E-08 51.9 0.0 95 42-148 2-99 (335)
272 PRK11524 putative methyltransf 95.3 0.028 6.1E-07 47.3 4.9 67 88-178 8-79 (284)
273 PRK09424 pntA NAD(P) transhydr 95.3 0.083 1.8E-06 48.3 8.0 40 38-82 163-203 (509)
274 PF11599 AviRa: RRNA methyltra 95.1 0.13 2.8E-06 42.1 7.7 121 22-149 34-202 (246)
275 KOG1709 Guanidinoacetate methy 95.0 0.11 2.5E-06 42.5 7.2 73 38-121 100-177 (271)
276 PF06460 NSP13: Coronavirus NS 95.0 0.14 3.1E-06 42.9 7.9 109 37-181 59-171 (299)
277 PF04816 DUF633: Family of unk 94.7 0.048 1E-06 44.0 4.4 52 43-98 1-59 (205)
278 PRK13699 putative methylase; P 94.7 0.037 8E-07 45.3 3.7 64 90-177 3-70 (227)
279 KOG1227 Putative methyltransfe 94.6 0.0077 1.7E-07 51.3 -0.6 92 26-130 181-279 (351)
280 PF07757 AdoMet_MTase: Predict 94.4 0.061 1.3E-06 39.2 3.8 36 39-80 58-93 (112)
281 cd08283 FDH_like_1 Glutathione 94.2 0.094 2E-06 45.6 5.5 77 36-119 181-260 (386)
282 PF01555 N6_N4_Mtase: DNA meth 94.1 0.086 1.9E-06 41.6 4.5 48 25-79 178-225 (231)
283 PF03141 Methyltransf_29: Puta 93.8 0.1 2.3E-06 47.3 4.9 94 41-179 367-467 (506)
284 PF03686 UPF0146: Uncharacteri 93.8 0.28 6.1E-06 36.7 6.4 94 40-184 14-107 (127)
285 COG0270 Dcm Site-specific DNA 93.7 0.085 1.8E-06 45.4 4.2 73 41-124 4-78 (328)
286 PRK09880 L-idonate 5-dehydroge 93.7 0.16 3.5E-06 43.2 5.9 42 37-82 167-209 (343)
287 PF06859 Bin3: Bicoid-interact 93.7 0.044 9.5E-07 40.0 2.0 43 113-178 1-43 (110)
288 COG3510 CmcI Cephalosporin hyd 93.6 1.5 3.3E-05 35.5 10.6 73 27-100 58-131 (237)
289 PF05206 TRM13: Methyltransfer 93.6 1.1 2.3E-05 37.6 10.3 79 26-104 5-90 (259)
290 PRK01747 mnmC bifunctional tRN 93.3 0.21 4.5E-06 46.9 6.3 37 41-77 59-103 (662)
291 PF07091 FmrO: Ribosomal RNA m 93.2 0.069 1.5E-06 44.4 2.5 73 34-119 100-177 (251)
292 cd08237 ribitol-5-phosphate_DH 93.2 0.32 7E-06 41.5 6.8 42 37-82 161-204 (341)
293 COG2384 Predicted SAM-dependen 93.0 0.52 1.1E-05 38.6 7.3 71 37-119 14-91 (226)
294 PF03269 DUF268: Caenorhabditi 92.9 0.12 2.7E-06 40.3 3.4 114 40-184 2-116 (177)
295 PF14314 Methyltrans_Mon: Viru 92.8 1.8 3.9E-05 40.9 11.5 129 22-181 307-458 (675)
296 TIGR03451 mycoS_dep_FDH mycoth 92.6 0.27 5.9E-06 42.1 5.6 42 36-82 173-216 (358)
297 PRK11524 putative methyltransf 92.6 0.22 4.8E-06 41.9 4.9 38 38-81 207-244 (284)
298 TIGR00675 dcm DNA-methyltransf 92.5 0.17 3.8E-06 43.2 4.2 68 43-124 1-70 (315)
299 KOG2798 Putative trehalase [Ca 92.4 0.17 3.7E-06 43.6 4.0 34 40-79 151-184 (369)
300 PF12692 Methyltransf_17: S-ad 92.4 0.81 1.8E-05 35.3 7.2 83 28-121 19-101 (160)
301 cd08254 hydroxyacyl_CoA_DH 6-h 92.2 0.5 1.1E-05 39.5 6.6 43 34-81 160-203 (338)
302 cd08239 THR_DH_like L-threonin 92.1 0.4 8.7E-06 40.5 6.0 40 37-81 161-202 (339)
303 KOG2651 rRNA adenine N-6-methy 92.1 0.25 5.4E-06 43.7 4.6 48 27-79 141-188 (476)
304 cd05188 MDR Medium chain reduc 91.7 0.5 1.1E-05 37.7 5.8 43 33-80 128-171 (271)
305 TIGR01202 bchC 2-desacetyl-2-h 91.6 0.51 1.1E-05 39.7 6.0 41 38-82 143-184 (308)
306 KOG0822 Protein kinase inhibit 91.6 0.37 8.1E-06 44.2 5.3 102 40-176 368-475 (649)
307 cd00401 AdoHcyase S-adenosyl-L 91.4 0.53 1.2E-05 42.0 6.1 50 28-82 190-240 (413)
308 PHA01634 hypothetical protein 91.2 0.31 6.7E-06 36.9 3.8 38 39-81 28-65 (156)
309 PRK13699 putative methylase; P 91.1 0.45 9.8E-06 38.9 5.0 37 38-80 162-198 (227)
310 COG1255 Uncharacterized protei 91.0 4.9 0.00011 29.8 9.7 94 38-184 13-107 (129)
311 PF00107 ADH_zinc_N: Zinc-bind 90.8 0.15 3.2E-06 37.0 1.7 91 49-182 1-92 (130)
312 PRK10309 galactitol-1-phosphat 90.8 0.89 1.9E-05 38.6 6.8 42 36-82 157-200 (347)
313 TIGR00497 hsdM type I restrict 90.8 0.9 2E-05 41.3 7.1 42 39-80 217-258 (501)
314 PLN02740 Alcohol dehydrogenase 90.5 0.88 1.9E-05 39.4 6.6 43 35-82 194-238 (381)
315 KOG3115 Methyltransferase-like 90.4 0.14 3.1E-06 41.6 1.4 36 40-79 61-96 (249)
316 cd08230 glucose_DH Glucose deh 90.3 0.38 8.2E-06 41.2 4.1 34 37-75 170-204 (355)
317 PF02005 TRM: N2,N2-dimethylgu 90.3 0.24 5.3E-06 43.6 2.9 98 39-179 49-154 (377)
318 TIGR03366 HpnZ_proposed putati 90.2 0.59 1.3E-05 38.7 5.1 41 37-82 118-160 (280)
319 PF01861 DUF43: Protein of unk 90.2 0.42 9.1E-06 39.6 4.1 73 39-122 44-121 (243)
320 cd08281 liver_ADH_like1 Zinc-d 90.2 0.79 1.7E-05 39.5 6.0 43 35-82 187-231 (371)
321 PLN02586 probable cinnamyl alc 90.0 2.9 6.2E-05 36.0 9.3 39 36-79 180-219 (360)
322 COG1062 AdhC Zn-dependent alco 89.6 1.2 2.7E-05 38.8 6.6 107 37-184 183-290 (366)
323 KOG2920 Predicted methyltransf 89.5 0.32 6.9E-06 41.2 2.8 39 38-81 115-153 (282)
324 KOG4022 Dihydropteridine reduc 89.0 5.5 0.00012 31.6 9.2 36 41-79 4-39 (236)
325 PF01555 N6_N4_Mtase: DNA meth 88.9 0.55 1.2E-05 36.9 3.8 48 114-179 1-56 (231)
326 KOG2352 Predicted spermine/spe 88.9 0.51 1.1E-05 42.7 3.9 114 39-181 295-418 (482)
327 PF02636 Methyltransf_28: Puta 88.8 1.7 3.6E-05 35.8 6.7 39 41-79 20-62 (252)
328 KOG1501 Arginine N-methyltrans 88.7 0.39 8.4E-06 43.3 2.9 48 42-94 69-123 (636)
329 KOG1209 1-Acyl dihydroxyaceton 88.6 3.2 6.9E-05 34.3 7.9 86 39-126 6-94 (289)
330 COG3129 Predicted SAM-dependen 88.4 0.58 1.3E-05 38.9 3.6 92 26-124 63-164 (292)
331 KOG1562 Spermidine synthase [A 88.0 0.45 9.8E-06 40.7 2.8 107 38-179 120-236 (337)
332 COG4301 Uncharacterized conser 87.7 2.7 5.8E-05 35.4 7.1 50 33-82 72-121 (321)
333 PLN03154 putative allyl alcoho 87.6 3 6.6E-05 35.7 7.8 42 35-81 154-197 (348)
334 PLN02827 Alcohol dehydrogenase 87.4 1.3 2.8E-05 38.5 5.4 43 36-82 190-233 (378)
335 TIGR02822 adh_fam_2 zinc-bindi 87.4 1.5 3.2E-05 37.3 5.7 42 36-82 162-204 (329)
336 PRK06179 short chain dehydroge 87.3 8.2 0.00018 31.2 9.9 77 40-122 4-82 (270)
337 TIGR00561 pntA NAD(P) transhyd 87.3 1.4 3E-05 40.5 5.7 39 39-82 163-202 (511)
338 TIGR03201 dearomat_had 6-hydro 87.3 1.2 2.7E-05 37.9 5.2 42 36-82 163-205 (349)
339 PRK10458 DNA cytosine methylas 86.9 1.3 2.9E-05 40.1 5.4 79 41-124 89-180 (467)
340 PRK08265 short chain dehydroge 86.9 1.8 3.8E-05 35.2 5.7 80 40-122 6-89 (261)
341 KOG3201 Uncharacterized conser 86.7 0.077 1.7E-06 41.7 -2.3 39 40-82 30-69 (201)
342 PRK07533 enoyl-(acyl carrier p 86.6 1.7 3.8E-05 35.3 5.6 82 39-122 9-97 (258)
343 TIGR02825 B4_12hDH leukotriene 86.6 4 8.6E-05 34.2 7.9 42 35-81 134-177 (325)
344 cd08285 NADP_ADH NADP(H)-depen 85.9 2.1 4.5E-05 36.4 5.8 42 36-81 163-205 (351)
345 cd08238 sorbose_phosphate_red 85.6 2.3 4.9E-05 37.3 6.1 45 36-82 172-218 (410)
346 TIGR02818 adh_III_F_hyde S-(hy 85.5 3.1 6.6E-05 35.9 6.8 43 35-82 181-225 (368)
347 TIGR02819 fdhA_non_GSH formald 85.5 2.3 4.9E-05 37.4 6.0 43 36-82 182-225 (393)
348 PRK07889 enoyl-(acyl carrier p 85.2 3.1 6.8E-05 33.8 6.4 82 39-122 6-94 (256)
349 PLN02668 indole-3-acetate carb 85.2 2.7 5.8E-05 37.3 6.3 19 40-58 64-82 (386)
350 PF10354 DUF2431: Domain of un 84.8 3.4 7.3E-05 32.1 6.1 114 47-185 4-131 (166)
351 cd08300 alcohol_DH_class_III c 84.0 2.9 6.2E-05 36.0 5.9 42 36-82 183-226 (368)
352 PRK06398 aldose dehydrogenase; 83.6 16 0.00035 29.5 10.0 74 40-122 6-81 (258)
353 PRK06182 short chain dehydroge 83.6 6.1 0.00013 32.2 7.5 79 40-122 3-83 (273)
354 COG1867 TRM1 N2,N2-dimethylgua 83.4 1.7 3.7E-05 38.2 4.2 96 40-179 53-154 (380)
355 cd08232 idonate-5-DH L-idonate 82.9 4.3 9.3E-05 34.0 6.5 38 39-81 165-204 (339)
356 cd08231 MDR_TM0436_like Hypoth 82.7 5.5 0.00012 33.9 7.1 41 35-80 173-215 (361)
357 PRK07576 short chain dehydroge 82.6 5.9 0.00013 32.2 7.0 81 39-122 8-95 (264)
358 KOG0022 Alcohol dehydrogenase, 82.6 4.6 0.0001 35.1 6.4 77 37-119 190-268 (375)
359 PF02254 TrkA_N: TrkA-N domain 82.4 1 2.3E-05 31.9 2.1 65 48-119 4-68 (116)
360 PRK08594 enoyl-(acyl carrier p 82.2 7.9 0.00017 31.5 7.6 82 39-122 6-96 (257)
361 cd08277 liver_alcohol_DH_like 82.1 3.5 7.7E-05 35.4 5.7 42 36-82 181-224 (365)
362 PRK06079 enoyl-(acyl carrier p 81.5 2.5 5.4E-05 34.3 4.4 82 39-122 6-92 (252)
363 PRK08264 short chain dehydroge 80.9 5.9 0.00013 31.3 6.3 77 39-122 5-82 (238)
364 PRK07454 short chain dehydroge 80.8 11 0.00025 29.7 8.0 81 39-122 5-92 (241)
365 cd08293 PTGR2 Prostaglandin re 80.6 7.2 0.00016 32.8 7.0 39 37-80 150-193 (345)
366 COG4627 Uncharacterized protei 80.5 0.79 1.7E-05 35.8 1.0 46 110-182 44-89 (185)
367 PRK08267 short chain dehydroge 80.3 11 0.00025 30.2 7.9 78 42-122 3-86 (260)
368 KOG3674 FtsJ-like RNA methyltr 79.7 1.1 2.4E-05 40.8 1.8 142 22-181 112-276 (696)
369 cd08295 double_bond_reductase_ 79.0 10 0.00023 31.9 7.5 42 35-81 147-190 (338)
370 cd05278 FDH_like Formaldehyde 79.0 5.8 0.00013 33.2 6.0 41 36-80 164-205 (347)
371 cd08236 sugar_DH NAD(P)-depend 79.0 5.5 0.00012 33.5 5.8 39 36-79 156-196 (343)
372 PRK05993 short chain dehydroge 78.9 9.1 0.0002 31.4 7.0 80 39-122 3-85 (277)
373 PF08484 Methyltransf_14: C-me 78.9 25 0.00054 27.1 8.9 39 38-80 66-105 (160)
374 cd05285 sorbitol_DH Sorbitol d 78.4 5.7 0.00012 33.5 5.7 41 35-80 158-200 (343)
375 KOG2793 Putative N2,N2-dimethy 78.0 14 0.0003 30.8 7.7 36 39-79 86-121 (248)
376 PRK07523 gluconate 5-dehydroge 78.0 15 0.00033 29.4 7.9 81 39-122 9-96 (255)
377 PRK08324 short chain dehydroge 78.0 7.2 0.00016 36.8 6.8 81 39-122 421-507 (681)
378 TIGR02622 CDP_4_6_dhtase CDP-g 78.0 22 0.00048 30.2 9.3 78 39-122 3-84 (349)
379 cd08301 alcohol_DH_plants Plan 77.8 8.2 0.00018 33.1 6.6 43 35-82 183-227 (369)
380 KOG1253 tRNA methyltransferase 77.7 0.72 1.6E-05 41.9 0.0 100 40-179 110-216 (525)
381 PRK08159 enoyl-(acyl carrier p 77.6 7 0.00015 32.2 5.9 82 39-122 9-97 (272)
382 PLN02514 cinnamyl-alcohol dehy 77.3 7.3 0.00016 33.4 6.2 41 34-79 175-216 (357)
383 PLN02178 cinnamyl-alcohol dehy 77.1 13 0.00028 32.3 7.7 37 38-79 177-214 (375)
384 COG0604 Qor NADPH:quinone redu 77.1 10 0.00022 32.5 6.9 81 29-119 132-217 (326)
385 PRK06180 short chain dehydroge 77.1 18 0.00039 29.5 8.2 80 40-122 4-87 (277)
386 PRK06701 short chain dehydroge 77.1 7.9 0.00017 32.2 6.1 80 40-122 46-133 (290)
387 PF05711 TylF: Macrocin-O-meth 77.0 26 0.00057 29.1 9.1 40 40-79 75-115 (248)
388 PRK08643 acetoin reductase; Va 76.7 18 0.00039 28.9 8.0 80 40-122 2-88 (256)
389 cd08294 leukotriene_B4_DH_like 76.5 15 0.00031 30.5 7.6 41 35-80 139-181 (329)
390 PF10237 N6-adenineMlase: Prob 76.4 34 0.00073 26.6 9.5 72 39-123 25-96 (162)
391 KOG2078 tRNA modification enzy 76.0 0.76 1.7E-05 41.2 -0.3 40 36-81 246-285 (495)
392 cd08278 benzyl_alcohol_DH Benz 75.7 5.8 0.00013 34.0 5.1 42 36-81 183-225 (365)
393 PF11312 DUF3115: Protein of u 75.4 11 0.00024 32.5 6.6 112 41-179 88-242 (315)
394 PRK06128 oxidoreductase; Provi 75.3 11 0.00023 31.4 6.5 80 40-122 55-143 (300)
395 PF06016 Reovirus_L2: Reovirus 75.2 7.2 0.00016 39.4 6.0 68 39-119 822-889 (1289)
396 cd08255 2-desacetyl-2-hydroxye 74.9 4.6 9.9E-05 32.8 4.1 41 36-81 94-136 (277)
397 PRK06603 enoyl-(acyl carrier p 74.9 11 0.00024 30.7 6.3 82 39-122 7-95 (260)
398 cd08261 Zn_ADH7 Alcohol dehydr 74.8 6.1 0.00013 33.2 4.9 40 36-80 156-196 (337)
399 PF12242 Eno-Rase_NADH_b: NAD( 74.7 13 0.00027 25.5 5.4 38 37-77 36-74 (78)
400 cd08245 CAD Cinnamyl alcohol d 74.6 8.5 0.00018 32.1 5.7 41 36-81 159-200 (330)
401 PRK08415 enoyl-(acyl carrier p 74.4 8.6 0.00019 31.8 5.6 81 39-122 4-92 (274)
402 COG2910 Putative NADH-flavin r 74.2 13 0.00028 30.0 6.2 63 47-121 6-70 (211)
403 PLN02989 cinnamyl-alcohol dehy 74.0 51 0.0011 27.4 10.8 76 39-122 4-86 (325)
404 PRK06482 short chain dehydroge 73.9 21 0.00047 28.9 7.9 79 41-122 3-85 (276)
405 PTZ00357 methyltransferase; Pr 73.8 5.5 0.00012 38.2 4.6 79 42-120 703-799 (1072)
406 PRK08177 short chain dehydroge 73.7 9.2 0.0002 30.1 5.5 76 42-121 3-79 (225)
407 PRK05786 fabG 3-ketoacyl-(acyl 73.6 12 0.00026 29.5 6.1 80 39-121 4-89 (238)
408 TIGR00006 S-adenosyl-methyltra 73.6 3.3 7.2E-05 35.5 3.0 15 168-182 229-243 (305)
409 PRK07326 short chain dehydroge 73.6 12 0.00027 29.4 6.2 80 40-122 6-91 (237)
410 PRK07985 oxidoreductase; Provi 73.2 15 0.00032 30.6 6.8 81 39-122 48-137 (294)
411 PRK05476 S-adenosyl-L-homocyst 73.0 15 0.00032 33.1 7.0 39 38-81 210-249 (425)
412 PRK06057 short chain dehydroge 72.8 3.6 7.8E-05 33.1 3.0 81 39-122 6-88 (255)
413 PRK12744 short chain dehydroge 72.8 20 0.00042 28.8 7.3 80 40-122 8-98 (257)
414 PLN02494 adenosylhomocysteinas 72.7 16 0.00034 33.4 7.2 46 30-80 244-290 (477)
415 PRK07806 short chain dehydroge 72.7 21 0.00046 28.2 7.5 81 39-122 5-93 (248)
416 PRK07666 fabG 3-ketoacyl-(acyl 72.7 20 0.00043 28.3 7.2 80 40-122 7-93 (239)
417 PRK07370 enoyl-(acyl carrier p 72.6 8.2 0.00018 31.4 5.1 82 39-122 5-96 (258)
418 COG0451 WcaG Nucleoside-diphos 72.2 28 0.00061 28.4 8.2 52 43-99 3-54 (314)
419 cd08243 quinone_oxidoreductase 72.2 17 0.00037 29.6 6.9 41 35-80 138-180 (320)
420 PLN03209 translocon at the inn 71.5 33 0.00073 32.1 9.2 78 37-122 77-168 (576)
421 PRK08251 short chain dehydroge 71.5 31 0.00067 27.3 8.1 80 40-122 2-90 (248)
422 TIGR03589 PseB UDP-N-acetylglu 71.1 30 0.00066 29.2 8.4 77 40-122 4-83 (324)
423 PRK06197 short chain dehydroge 71.1 29 0.00063 28.8 8.2 81 39-122 15-104 (306)
424 PRK08263 short chain dehydroge 71.0 26 0.00056 28.5 7.7 80 40-122 3-86 (275)
425 KOG2782 Putative SAM dependent 70.9 2.1 4.4E-05 35.4 1.0 90 27-122 32-127 (303)
426 COG1565 Uncharacterized conser 70.7 12 0.00026 32.9 5.8 41 40-80 78-122 (370)
427 cd08241 QOR1 Quinone oxidoredu 70.7 35 0.00075 27.6 8.4 41 35-80 135-177 (323)
428 KOG0821 Predicted ribosomal RN 70.6 7 0.00015 32.5 4.0 53 41-98 52-109 (326)
429 cd08233 butanediol_DH_like (2R 70.4 11 0.00023 31.9 5.5 41 36-81 169-211 (351)
430 PLN02657 3,8-divinyl protochlo 70.4 36 0.00077 29.8 8.9 79 38-121 58-144 (390)
431 cd08263 Zn_ADH10 Alcohol dehyd 70.2 14 0.0003 31.6 6.1 41 35-80 183-225 (367)
432 cd08296 CAD_like Cinnamyl alco 70.1 12 0.00027 31.4 5.7 41 36-81 160-201 (333)
433 PRK06940 short chain dehydroge 70.0 26 0.00056 28.7 7.5 75 42-122 4-85 (275)
434 PRK00050 16S rRNA m(4)C1402 me 69.8 4.6 9.9E-05 34.5 3.0 15 168-182 225-239 (296)
435 PRK06200 2,3-dihydroxy-2,3-dih 69.4 6.8 0.00015 31.6 3.9 81 39-122 5-89 (263)
436 KOG2811 Uncharacterized conser 69.3 15 0.00033 32.5 6.1 66 38-107 181-254 (420)
437 PRK06949 short chain dehydroge 69.1 8.6 0.00019 30.7 4.4 81 39-122 8-95 (258)
438 PF03492 Methyltransf_7: SAM d 69.1 4.7 0.0001 34.9 2.9 21 40-60 17-37 (334)
439 cd05281 TDH Threonine dehydrog 68.8 9.8 0.00021 32.0 4.9 38 37-79 161-200 (341)
440 COG0677 WecC UDP-N-acetyl-D-ma 68.5 9 0.00019 34.3 4.6 38 41-82 10-47 (436)
441 cd08240 6_hydroxyhexanoate_dh_ 68.5 20 0.00042 30.3 6.7 39 37-80 173-213 (350)
442 PRK06113 7-alpha-hydroxysteroi 68.4 13 0.00028 29.8 5.4 80 40-122 11-97 (255)
443 PRK12429 3-hydroxybutyrate deh 68.1 36 0.00079 26.9 7.9 80 40-122 4-90 (258)
444 PRK06523 short chain dehydroge 68.0 17 0.00036 29.2 5.9 77 39-122 8-86 (260)
445 PRK12742 oxidoreductase; Provi 67.9 16 0.00035 28.7 5.7 78 40-122 6-84 (237)
446 cd08234 threonine_DH_like L-th 67.8 7.7 0.00017 32.3 4.0 42 35-81 155-198 (334)
447 PRK06139 short chain dehydroge 67.5 30 0.00065 29.5 7.6 80 40-122 7-93 (330)
448 PRK06181 short chain dehydroge 67.4 32 0.00068 27.6 7.4 79 41-122 2-87 (263)
449 PF11899 DUF3419: Protein of u 66.6 10 0.00022 33.6 4.5 42 32-79 28-69 (380)
450 PRK05717 oxidoreductase; Valid 66.1 8.5 0.00018 30.9 3.8 81 39-122 9-93 (255)
451 PRK06138 short chain dehydroge 65.8 42 0.00091 26.5 7.8 80 40-122 5-90 (252)
452 cd08286 FDH_like_ADH2 formalde 65.5 21 0.00046 30.0 6.2 41 36-80 163-204 (345)
453 PRK07109 short chain dehydroge 65.5 35 0.00075 29.1 7.6 80 40-122 8-94 (334)
454 PF01795 Methyltransf_5: MraW 65.4 3.8 8.3E-05 35.2 1.6 27 138-182 218-244 (310)
455 PRK06196 oxidoreductase; Provi 65.3 7.2 0.00016 32.7 3.3 81 39-122 25-108 (315)
456 COG1568 Predicted methyltransf 65.1 8.9 0.00019 32.9 3.7 72 40-122 153-230 (354)
457 PRK06505 enoyl-(acyl carrier p 65.0 13 0.00028 30.6 4.7 82 39-122 6-94 (271)
458 PLN02253 xanthoxin dehydrogena 64.9 13 0.00027 30.3 4.7 80 40-122 18-103 (280)
459 PRK08217 fabG 3-ketoacyl-(acyl 64.7 11 0.00023 29.9 4.1 81 39-122 4-91 (253)
460 PRK05650 short chain dehydroge 64.5 44 0.00095 27.0 7.8 78 42-122 2-86 (270)
461 KOG0023 Alcohol dehydrogenase, 64.4 31 0.00067 30.2 6.9 38 37-79 179-217 (360)
462 cd05284 arabinose_DH_like D-ar 64.0 31 0.00067 28.7 7.0 41 36-80 164-205 (340)
463 PRK08226 short chain dehydroge 64.0 45 0.00098 26.7 7.7 81 39-122 5-91 (263)
464 PRK06171 sorbitol-6-phosphate 63.9 74 0.0016 25.5 10.1 76 40-122 9-86 (266)
465 cd08279 Zn_ADH_class_III Class 63.8 29 0.00063 29.6 6.9 41 35-80 178-220 (363)
466 cd08265 Zn_ADH3 Alcohol dehydr 63.5 16 0.00035 31.5 5.3 40 35-79 199-240 (384)
467 PRK06483 dihydromonapterin red 63.4 14 0.0003 29.3 4.5 79 41-122 3-83 (236)
468 cd08242 MDR_like Medium chain 62.6 15 0.00033 30.4 4.8 42 36-81 152-193 (319)
469 PRK09291 short chain dehydroge 62.2 58 0.0013 25.8 8.0 75 41-122 3-82 (257)
470 cd05279 Zn_ADH1 Liver alcohol 62.1 30 0.00065 29.6 6.7 43 35-81 179-222 (365)
471 PLN02662 cinnamyl-alcohol dehy 62.1 25 0.00055 29.1 6.1 75 40-122 4-85 (322)
472 TIGR00692 tdh L-threonine 3-de 62.1 20 0.00044 30.1 5.5 38 37-79 159-198 (340)
473 PRK12939 short chain dehydroge 61.8 52 0.0011 25.8 7.6 81 39-122 6-93 (250)
474 PRK07067 sorbitol dehydrogenas 61.7 13 0.00027 29.9 4.0 80 40-122 6-89 (257)
475 PRK07578 short chain dehydroge 61.5 44 0.00096 25.6 7.0 63 42-122 2-64 (199)
476 PRK07814 short chain dehydroge 61.4 13 0.00028 30.1 4.1 81 39-122 9-96 (263)
477 COG0863 DNA modification methy 61.4 21 0.00045 29.5 5.4 49 26-81 210-258 (302)
478 COG0686 Ald Alanine dehydrogen 61.3 9.9 0.00021 33.1 3.4 66 41-119 169-237 (371)
479 PRK09422 ethanol-active dehydr 61.0 31 0.00068 28.7 6.5 43 35-81 158-201 (338)
480 PRK08213 gluconate 5-dehydroge 60.9 14 0.0003 29.7 4.1 81 39-122 11-98 (259)
481 PRK08125 bifunctional UDP-gluc 60.7 39 0.00085 31.8 7.6 76 38-119 313-388 (660)
482 PLN02702 L-idonate 5-dehydroge 60.1 27 0.00058 29.7 6.0 42 36-81 178-220 (364)
483 cd05283 CAD1 Cinnamyl alcohol 60.1 17 0.00038 30.5 4.8 40 37-81 167-207 (337)
484 KOG4058 Uncharacterized conser 59.8 6.2 0.00013 30.8 1.7 66 29-99 60-134 (199)
485 PRK07904 short chain dehydroge 59.7 40 0.00088 27.2 6.7 81 38-121 6-95 (253)
486 PRK05855 short chain dehydroge 59.7 54 0.0012 29.4 8.1 80 40-122 315-401 (582)
487 PRK07102 short chain dehydroge 59.5 21 0.00046 28.3 5.0 74 42-121 3-84 (243)
488 cd08297 CAD3 Cinnamyl alcohol 59.5 28 0.0006 29.1 5.9 39 36-79 162-202 (341)
489 PLN02653 GDP-mannose 4,6-dehyd 59.4 79 0.0017 26.5 8.7 77 40-122 6-92 (340)
490 COG1748 LYS9 Saccharopine dehy 59.4 17 0.00037 32.3 4.7 74 41-122 2-77 (389)
491 PRK06194 hypothetical protein; 59.2 38 0.00082 27.6 6.5 80 40-122 6-92 (287)
492 cd08289 MDR_yhfp_like Yhfp put 59.1 48 0.001 27.3 7.3 39 38-81 145-185 (326)
493 PRK12829 short chain dehydroge 58.9 15 0.00033 29.3 4.1 81 39-122 10-95 (264)
494 cd05286 QOR2 Quinone oxidoredu 58.8 45 0.00097 26.8 6.9 40 36-80 133-174 (320)
495 PRK06124 gluconate 5-dehydroge 58.5 16 0.00034 29.2 4.1 81 39-122 10-97 (256)
496 PRK08703 short chain dehydroge 58.4 19 0.00041 28.5 4.5 81 39-122 5-96 (239)
497 PRK07890 short chain dehydroge 58.4 14 0.0003 29.5 3.7 81 39-122 4-91 (258)
498 PRK06997 enoyl-(acyl carrier p 58.2 24 0.00051 28.7 5.1 82 39-122 5-93 (260)
499 PF05050 Methyltransf_21: Meth 58.1 12 0.00027 27.5 3.2 32 45-79 1-35 (167)
500 PRK07060 short chain dehydroge 58.0 8.7 0.00019 30.4 2.5 79 39-122 8-86 (245)
No 1
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.3e-25 Score=175.70 Aligned_cols=155 Identities=38% Similarity=0.640 Sum_probs=138.5
Q ss_pred CCCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc
Q 038391 4 VGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL 83 (186)
Q Consensus 4 ~~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~ 83 (186)
++..|+|+..++..+|++|++|||+|+.+.+..++++..|+||||.||+|++.+++..+. ++.|+|+|+.|-..-.
T Consensus 10 ~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~---~~~ivavDi~p~~~~~- 85 (205)
T COG0293 10 EHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGA---GGKIVAVDILPMKPIP- 85 (205)
T ss_pred HhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCC---CCcEEEEECcccccCC-
Confidence 467899999999999999999999999999999999999999999999999999999875 5679999999977443
Q ss_pred CCCCCeEEEEeeecCCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCC
Q 038391 84 HCDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDS 162 (186)
Q Consensus 84 ~~~~~~~~~~~d~~~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
++.++++|++.... ..|.+.. ....+|+|++||+|+.+|.+..|+..+..+...+++.+..
T Consensus 86 ----~V~~iq~d~~~~~~~~~l~~~l-~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~------------- 147 (205)
T COG0293 86 ----GVIFLQGDITDEDTLEKLLEAL-GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALE------------- 147 (205)
T ss_pred ----CceEEeeeccCccHHHHHHHHc-CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHH-------------
Confidence 49999999998763 3444443 2445799999999999999999999999999999999999
Q ss_pred CCCCcccccCcEEEEEEccCCCC
Q 038391 163 STDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 163 ~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
+|+|||.++++.|.|+++
T Consensus 148 -----vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 148 -----VLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred -----eeCCCCeEEEEEEeCCCH
Confidence 999999999999999986
No 2
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4.9e-24 Score=167.26 Aligned_cols=154 Identities=34% Similarity=0.610 Sum_probs=134.6
Q ss_pred CCCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc
Q 038391 4 VGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL 83 (186)
Q Consensus 4 ~~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~ 83 (186)
++..|+|...++..+||+|++|||+|+.+.|..++|+.+|||+||+||.|+....++.++ .+.|.|||+..-....
T Consensus 34 Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p---~g~v~gVDllh~~p~~- 109 (232)
T KOG4589|consen 34 RQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNP---NGMVLGVDLLHIEPPE- 109 (232)
T ss_pred HhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCC---CceEEEEeeeeccCCC-
Confidence 356799999999999999999999999999999999999999999999999999999865 7999999998866332
Q ss_pred CCCCCeEEEEe-eecCCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCC
Q 038391 84 HCDARVQTVSA-DVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSD 161 (186)
Q Consensus 84 ~~~~~~~~~~~-d~~~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
.++++++ |+++... ..|.+-. ++.++|+|++||.|+.+|....|+...++++..++..+..
T Consensus 110 ----Ga~~i~~~dvtdp~~~~ki~e~l-p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~------------ 172 (232)
T KOG4589|consen 110 ----GATIIQGNDVTDPETYRKIFEAL-PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALT------------ 172 (232)
T ss_pred ----CcccccccccCCHHHHHHHHHhC-CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhh------------
Confidence 4666766 7776543 2333333 5799999999999999999999999999999999999998
Q ss_pred CCCCCcccccCcEEEEEEccCCC
Q 038391 162 SSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 162 ~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+++|+|.+++|+|.|++
T Consensus 173 ------~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 173 ------LLIPNGSFVCKLWDGSE 189 (232)
T ss_pred ------hcCCCcEEEEEEecCCc
Confidence 99999999999999986
No 3
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.91 E-value=1.9e-23 Score=168.83 Aligned_cols=154 Identities=32% Similarity=0.478 Sum_probs=126.4
Q ss_pred CCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC
Q 038391 5 GAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH 84 (186)
Q Consensus 5 ~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~ 84 (186)
+.+|+|+..++..+|++|+.+++.++...+..++++.+|||+|||||.++..+++..++ .++|+|||+++ |.
T Consensus 17 ~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~---~~~V~aVDi~~-~~---- 88 (209)
T PRK11188 17 HFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGD---KGRVIACDILP-MD---- 88 (209)
T ss_pred hhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCC---CceEEEEeccc-cc----
Confidence 45799999999999999999999999999998899999999999999999999999764 57999999998 31
Q ss_pred CCCCeEEEEeeecCCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCC
Q 038391 85 CDARVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSS 163 (186)
Q Consensus 85 ~~~~~~~~~~d~~~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (186)
...+++++++|+.+... +.+.+-. ..++||+|++|++|+..+....+......+...++.++.+
T Consensus 89 ~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~-------------- 153 (209)
T PRK11188 89 PIVGVDFLQGDFRDELVLKALLERV-GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRD-------------- 153 (209)
T ss_pred CCCCcEEEecCCCChHHHHHHHHHh-CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHH--------------
Confidence 12468999999987541 2221111 3578999999998888776655655555667789999998
Q ss_pred CCCcccccCcEEEEEEccCCCC
Q 038391 164 TDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 164 ~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
+|||||+|++++|.++++
T Consensus 154 ----~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 154 ----VLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred ----HcCCCCEEEEEEecCcCH
Confidence 999999999999998874
No 4
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.88 E-value=1.5e-22 Score=163.37 Aligned_cols=158 Identities=29% Similarity=0.521 Sum_probs=137.0
Q ss_pred CCCCCCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCC-CC-C---eEEEEeC
Q 038391 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLD-NG-G---SVVGIDV 75 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~-~~-~---~v~gvDi 75 (186)
|+++..+|.||+.+++.+||+|++|||.++..+|..+..-.+++|||+.||.|+..+++++-... +. . .+++||+
T Consensus 3 ktskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDL 82 (294)
T KOG1099|consen 3 KTSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDL 82 (294)
T ss_pred CccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEec
Confidence 35677899999999999999999999999999999888889999999999999999998864211 11 1 3999999
Q ss_pred CCCC-CCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcc
Q 038391 76 KKVK-VPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAA 152 (186)
Q Consensus 76 s~~~-i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (186)
++-. |+ .+..+++|+++... ..+++|. +.+.|+|+||++|+.+|+|.++.....+++..++.++..
T Consensus 83 Q~MaPI~------GV~qlq~DIT~~stae~Ii~hfg--gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~--- 151 (294)
T KOG1099|consen 83 QPMAPIE------GVIQLQGDITSASTAEAIIEHFG--GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATC--- 151 (294)
T ss_pred ccCCccC------ceEEeecccCCHhHHHHHHHHhC--CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhh---
Confidence 8866 34 58899999998763 3455553 579999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 153 LASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 153 ~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||.||-|+|.|.+
T Consensus 152 ---------------Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 152 ---------------VLKPGGSFVAKIFRGRD 168 (294)
T ss_pred ---------------eecCCCeeehhhhccCc
Confidence 99999999999999986
No 5
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.84 E-value=1.9e-19 Score=142.54 Aligned_cols=150 Identities=38% Similarity=0.685 Sum_probs=121.6
Q ss_pred ChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCC
Q 038391 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDA 87 (186)
Q Consensus 8 ~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~ 87 (186)
|.||+.+..+.|+.|..+++.++...+..++++.+|||+|||+|.++..+++.+.. .++|+++|+++.+ ...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~---~~~v~~vDis~~~-----~~~ 72 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGG---KGRVIAVDLQPMK-----PIE 72 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCC---CceEEEEeccccc-----cCC
Confidence 56888888888999999999999999999999999999999999999999988743 4689999999976 124
Q ss_pred CeEEEEeeecCCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCC
Q 038391 88 RVQTVSADVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDS 166 (186)
Q Consensus 88 ~~~~~~~d~~~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (186)
++.++++|+.+... ..+.+.. +.++||+|+++++++..+.+..++....+..+.++..+.+
T Consensus 73 ~i~~~~~d~~~~~~~~~l~~~~-~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~----------------- 134 (188)
T TIGR00438 73 NVDFIRGDFTDEEVLNKIRERV-GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKE----------------- 134 (188)
T ss_pred CceEEEeeCCChhHHHHHHHHh-CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHH-----------------
Confidence 57888888876431 1121111 3568999999988777788888877777777888999988
Q ss_pred cccccCcEEEEEEccCCC
Q 038391 167 GVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 167 ~~LkpgG~lvi~~~~~~~ 184 (186)
+|+|||++++..+..++
T Consensus 135 -~LkpgG~lvi~~~~~~~ 151 (188)
T TIGR00438 135 -VLKPKGNFVVKVFQGEE 151 (188)
T ss_pred -HccCCCEEEEEEccCcc
Confidence 99999999998877654
No 6
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=99.82 E-value=2.7e-20 Score=166.81 Aligned_cols=158 Identities=41% Similarity=0.604 Sum_probs=134.2
Q ss_pred CCCCCCCChHHHHHHhhchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 1 MSGVGAPDFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
|++.+.+|.||+.+++.+|++|++|+|++++..|.++.++..||||||+||+|....++.++. ++-|+|||+-|-..
T Consensus 6 ~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv---~slivGvDl~pikp 82 (780)
T KOG1098|consen 6 KSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPV---GSLIVGVDLVPIKP 82 (780)
T ss_pred cCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCC---CceEEEeeeeeccc
Confidence 568899999999999999999999999999999999999999999999999999999999986 78999999999874
Q ss_pred CCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCC
Q 038391 81 PSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNN 159 (186)
Q Consensus 81 ~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
.. ++..++.|++... ...+.... ...+.|+|+.|++|+.++.|..++..+..+...++..+..
T Consensus 83 ~~-----~c~t~v~dIttd~cr~~l~k~l-~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~---------- 146 (780)
T KOG1098|consen 83 IP-----NCDTLVEDITTDECRSKLRKIL-KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATE---------- 146 (780)
T ss_pred CC-----ccchhhhhhhHHHHHHHHHHHH-HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHH----------
Confidence 43 3444445544221 11111111 1346799999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCcEEEEEEccCCCC
Q 038391 160 SDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 160 ~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
.|+.||+++-++|.++|+
T Consensus 147 --------~l~~~g~fvtkvfrs~dy 164 (780)
T KOG1098|consen 147 --------FLAKGGTFVTKVFRSEDY 164 (780)
T ss_pred --------HHHhcCccccccccCCcc
Confidence 999999999999999986
No 7
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=99.81 E-value=4.7e-20 Score=145.02 Aligned_cols=141 Identities=42% Similarity=0.722 Sum_probs=106.6
Q ss_pred hhhhhHHhHHHHHHHcCCCCCC--CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeee
Q 038391 19 YVARSAFKLLQIQKQYKLIKPG--SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADV 96 (186)
Q Consensus 19 y~~r~~~~l~~~~~~~~~~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~ 96 (186)
|++|+++||.|+...+..++++ .++||+||+||+|+..+.++.+. .++|+|+|+.+.... ..+.++++|+
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~---~~~v~avDl~~~~~~-----~~~~~i~~d~ 72 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGP---AGRVVAVDLGPMDPL-----QNVSFIQGDI 72 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTT---EEEEEEEESSSTGS------TTEEBTTGGG
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccc---cceEEEEeccccccc-----cceeeeeccc
Confidence 7899999999999999977664 89999999999999999998632 489999999988321 2455566666
Q ss_pred cCCCh-hhHhhhCC-CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcE
Q 038391 97 INLPS-NQVRALSP-KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGH 174 (186)
Q Consensus 97 ~~~~~-~~l~~~~~-~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~ 174 (186)
.+... ..+.+... ..+++|+|+||++++..+.+..++....++....+..+.. .|+|||.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~------------------~L~~gG~ 134 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALE------------------LLKPGGT 134 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHH------------------HHCTTEE
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHh------------------hhcCCCE
Confidence 55422 22333221 2369999999999999999999999999999999999988 9999999
Q ss_pred EEEEEccCCCC
Q 038391 175 LVIKLLESQDA 185 (186)
Q Consensus 175 lvi~~~~~~~~ 185 (186)
+|+++|.+++.
T Consensus 135 ~v~K~~~~~~~ 145 (181)
T PF01728_consen 135 FVIKVFKGPEI 145 (181)
T ss_dssp EEEEESSSTTS
T ss_pred EEEEeccCccH
Confidence 99999998764
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=2.6e-16 Score=129.29 Aligned_cols=136 Identities=26% Similarity=0.378 Sum_probs=99.0
Q ss_pred ChHHHHHHhhchhhhh-----HHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 8 DFFYREAQRLGYVARS-----AFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 8 ~~~~~~~~~~~y~~r~-----~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+.|.+.++.++-.++- -..+.+.......+++|.+|||+|||||-++..+++..+ .++|+|+|+|+.|+..
T Consensus 15 ~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g----~g~v~~~D~s~~ML~~ 90 (238)
T COG2226 15 KVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG----TGEVVGLDISESMLEV 90 (238)
T ss_pred HHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC----CceEEEEECCHHHHHH
Confidence 5567777665433311 011222222222245899999999999999999999986 4899999999999765
Q ss_pred c------CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCC
Q 038391 83 L------HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASP 156 (186)
Q Consensus 83 ~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (186)
+ ....+++|+++|+.++++ ++++||.|.+. .++++... ...++.++.|
T Consensus 91 a~~k~~~~~~~~i~fv~~dAe~LPf--------~D~sFD~vt~~-----fglrnv~d------~~~aL~E~~R------- 144 (238)
T COG2226 91 AREKLKKKGVQNVEFVVGDAENLPF--------PDNSFDAVTIS-----FGLRNVTD------IDKALKEMYR------- 144 (238)
T ss_pred HHHHhhccCccceEEEEechhhCCC--------CCCccCEEEee-----ehhhcCCC------HHHHHHHHHH-------
Confidence 2 112238999999998875 47899999984 45555554 7789999999
Q ss_pred CCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 157 VNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 157 ~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||++++--+..++
T Consensus 145 -----------VlKpgG~~~vle~~~p~ 161 (238)
T COG2226 145 -----------VLKPGGRLLVLEFSKPD 161 (238)
T ss_pred -----------hhcCCeEEEEEEcCCCC
Confidence 99999999988776543
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.65 E-value=9e-17 Score=131.92 Aligned_cols=140 Identities=26% Similarity=0.397 Sum_probs=76.3
Q ss_pred CCCChHHHHHHhhchhhhh-HH----hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 5 GAPDFFYREAQRLGYVARS-AF----KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 5 ~~~~~~~~~~~~~~y~~r~-~~----~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.....|++.+..++..++- .+ .+..........++|.+|||+|||||.++..++++.++ .++|+|+|+|+.|
T Consensus 8 ~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~---~~~v~~vD~s~~M 84 (233)
T PF01209_consen 8 YVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGP---NGKVVGVDISPGM 84 (233)
T ss_dssp -----------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS------EEEEEES-HHH
T ss_pred HHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCC---ccEEEEecCCHHH
Confidence 3456777777775533221 00 11111111223578899999999999999999998764 5799999999999
Q ss_pred CCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCccc
Q 038391 80 VPSL------HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAAL 153 (186)
Q Consensus 80 i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (186)
+..+ ....+++++++|+.+++.+ +++||.|++. .+.++... ...++.++.|
T Consensus 85 L~~a~~k~~~~~~~~i~~v~~da~~lp~~--------d~sfD~v~~~-----fglrn~~d------~~~~l~E~~R---- 141 (233)
T PF01209_consen 85 LEVARKKLKREGLQNIEFVQGDAEDLPFP--------DNSFDAVTCS-----FGLRNFPD------RERALREMYR---- 141 (233)
T ss_dssp HHHHHHHHHHTT--SEEEEE-BTTB--S---------TT-EEEEEEE-----S-GGG-SS------HHHHHHHHHH----
T ss_pred HHHHHHHHHhhCCCCeeEEEcCHHHhcCC--------CCceeEEEHH-----hhHHhhCC------HHHHHHHHHH----
Confidence 8652 1234899999999888753 6899999983 34555433 5578899998
Q ss_pred CCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 154 ASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 154 ~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||+++|-.|+-++
T Consensus 142 --------------VLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 142 --------------VLKPGGRLVILEFSKPR 158 (233)
T ss_dssp --------------HEEEEEEEEEEEEEB-S
T ss_pred --------------HcCCCeEEEEeeccCCC
Confidence 99999999998876553
No 10
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.61 E-value=3.3e-15 Score=124.36 Aligned_cols=108 Identities=24% Similarity=0.397 Sum_probs=83.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC---------CCCCeEEEEeeecCCChhhHhh
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH---------CDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~---------~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
.++++.+|||+|||+|.++..+++.+++ .++|+|+|+|+.|+..+. ...+++++++|+.+++.
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~---~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~----- 141 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGS---DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF----- 141 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC-----
Confidence 4678899999999999999999988653 479999999999976521 13478899999877653
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
++++||+|++... .+.... ...++.++.+ +|||||++++..|..+
T Consensus 142 ---~~~sfD~V~~~~~-----l~~~~d------~~~~l~ei~r------------------vLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 142 ---DDCYFDAITMGYG-----LRNVVD------RLKAMQEMYR------------------VLKPGSRVSILDFNKS 186 (261)
T ss_pred ---CCCCEeEEEEecc-----cccCCC------HHHHHHHHHH------------------HcCcCcEEEEEECCCC
Confidence 3578999998543 232221 4578888888 9999999999887654
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.60 E-value=2.1e-15 Score=108.72 Aligned_cols=103 Identities=26% Similarity=0.408 Sum_probs=77.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeee-cCCChhhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADV-INLPSNQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~-~~~~~~~l~~~~~~ 110 (186)
|+.+|||+|||+|.++..+++..+ +.+|+|+|+++.+++. .....+++++++|+ .... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------~ 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP----GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD---------F 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT----TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT---------T
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc---------c
Confidence 578999999999999999999654 5899999999999754 24567999999998 2222 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+||+|++.. . ..+.... .+....+++.+.+ .|+|||+|+|..
T Consensus 68 ~~~~D~v~~~~-~---~~~~~~~---~~~~~~~l~~~~~------------------~L~pgG~lvi~~ 111 (112)
T PF12847_consen 68 LEPFDLVICSG-F---TLHFLLP---LDERRRVLERIRR------------------LLKPGGRLVINT 111 (112)
T ss_dssp SSCEEEEEECS-G---SGGGCCH---HHHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred CCCCCEEEECC-C---ccccccc---hhHHHHHHHHHHH------------------hcCCCcEEEEEE
Confidence 46799999943 0 1111111 1445677777777 999999999974
No 12
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.54 E-value=3.9e-14 Score=116.58 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=77.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-CCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.++.+|||+|||+|.++..+++. +.+|+++|+++.|+..+.. .....++++|+..++. ++++||+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~--------~~~~fD~ 106 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPL--------ATATFDL 106 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcC--------CCCcEEE
Confidence 45689999999999999988875 5799999999999765322 1235677888866542 3568999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
|+++.. ..|..+ ...++.++.+ +|||||.+++..+...
T Consensus 107 V~s~~~----l~~~~d-------~~~~l~~~~~------------------~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 107 AWSNLA----VQWCGN-------LSTALRELYR------------------VVRPGGVVAFTTLVQG 144 (251)
T ss_pred EEECch----hhhcCC-------HHHHHHHHHH------------------HcCCCeEEEEEeCCCC
Confidence 999653 223333 4567788887 9999999999987653
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.52 E-value=9.2e-14 Score=119.81 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=79.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++.+|||+|||+|.++..+++.+ +.+|+|+|+++.++..+ ....+++++++|+.+.+. +
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-----g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~ 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-----GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------E 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------C
Confidence 678899999999999999999986 47999999999987541 233578999999877643 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+++||+|++.. ...|..+ ...++.++.+ +|||||+|+|..+.
T Consensus 184 ~~~FD~V~s~~----~~~h~~d-------~~~~l~e~~r------------------vLkpGG~lvi~~~~ 225 (340)
T PLN02244 184 DGQFDLVWSME----SGEHMPD-------KRKFVQELAR------------------VAAPGGRIIIVTWC 225 (340)
T ss_pred CCCccEEEECC----chhccCC-------HHHHHHHHHH------------------HcCCCcEEEEEEec
Confidence 57999999854 2233333 4467888888 99999999998764
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.52 E-value=1.3e-13 Score=111.86 Aligned_cols=107 Identities=23% Similarity=0.414 Sum_probs=79.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++.+++ +++|+|+|+++.+++.+ ....+++++++|+...+.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------- 110 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGP---EGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF-------- 110 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------
Confidence 3577899999999999999999998754 57999999999986541 122478888898866532
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.++||+|+++... .+..+ ....+.++.+ +|+|||.+++.....
T Consensus 111 ~~~~fD~V~~~~~l----~~~~~-------~~~~l~~~~~------------------~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 111 DDNSFDYVTIGFGL----RNVPD-------YMQVLREMYR------------------VVKPGGKVVCLETSQ 154 (231)
T ss_pred CCCCccEEEEeccc----ccCCC-------HHHHHHHHHH------------------HcCcCeEEEEEECCC
Confidence 35789999985421 12222 3357777777 999999999866543
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=6.4e-14 Score=115.79 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
..++.+|||+|||+|.++..+++.++ +.+|+|+|+|+.|+..+.. .+++++++|+.++. +.++||+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p----~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~---------~~~~fD~ 92 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWP----GAVIEALDSSPEMVAAARE-RGVDARTGDVRDWK---------PKPDTDV 92 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCC---------CCCCceE
Confidence 46788999999999999999999864 4799999999999876433 25788888876542 2468999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|+++.. ..|..+ ...++..+.+ .|||||.+++.++.
T Consensus 93 v~~~~~----l~~~~d-------~~~~l~~~~~------------------~LkpgG~l~~~~~~ 128 (255)
T PRK14103 93 VVSNAA----LQWVPE-------HADLLVRWVD------------------ELAPGSWIAVQVPG 128 (255)
T ss_pred EEEehh----hhhCCC-------HHHHHHHHHH------------------hCCCCcEEEEEcCC
Confidence 999653 223333 3467777777 99999999998643
No 16
>PTZ00146 fibrillarin; Provisional
Probab=99.50 E-value=7.7e-14 Score=117.60 Aligned_cols=122 Identities=26% Similarity=0.318 Sum_probs=86.1
Q ss_pred hhhhhHH--hHHHHHHH-cC--CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC----CCcCCCCCe
Q 038391 19 YVARSAF--KLLQIQKQ-YK--LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV----PSLHCDARV 89 (186)
Q Consensus 19 y~~r~~~--~l~~~~~~-~~--~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i----~~~~~~~~~ 89 (186)
||.+.++ ||...+.. .. .++++.+|||+|||+|.+++++++.+++ .++|+++|+++.++ ..+....++
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~---~G~VyAVD~s~r~~~dLl~~ak~r~NI 183 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGP---EGVVYAVEFSHRSGRDLTNMAKKRPNI 183 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECcHHHHHHHHHHhhhcCCC
Confidence 6666655 67754422 22 3689999999999999999999999875 57999999998753 333334678
Q ss_pred EEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCccc
Q 038391 90 QTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVL 169 (186)
Q Consensus 90 ~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 169 (186)
.++..|+..... +.. ...+||+|++|+. .+++ ...++.++.+ +|
T Consensus 184 ~~I~~Da~~p~~--y~~---~~~~vDvV~~Dva-------~pdq------~~il~~na~r------------------~L 227 (293)
T PTZ00146 184 VPIIEDARYPQK--YRM---LVPMVDVIFADVA-------QPDQ------ARIVALNAQY------------------FL 227 (293)
T ss_pred EEEECCccChhh--hhc---ccCCCCEEEEeCC-------Ccch------HHHHHHHHHH------------------hc
Confidence 899998764321 111 1347999999873 1222 4455666777 99
Q ss_pred ccCcEEEEEE
Q 038391 170 KPGGHLVIKL 179 (186)
Q Consensus 170 kpgG~lvi~~ 179 (186)
||||.|+|++
T Consensus 228 KpGG~~vI~i 237 (293)
T PTZ00146 228 KNGGHFIISI 237 (293)
T ss_pred cCCCEEEEEE
Confidence 9999999953
No 17
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.50 E-value=1.4e-13 Score=122.19 Aligned_cols=117 Identities=24% Similarity=0.334 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++|.+|||+|||+|+.|.++++.+++ +++|+++|+++.++... ....++.++++|...+... .
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~---~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~-------~ 304 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKD---QGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY-------V 304 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh-------h
Confidence 578999999999999999999999865 58999999999997541 1123577888887654311 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||.|++|++|+..|....+..... .+....+..+.+ .|||||+|+..+
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~LkpGG~LvYsT 366 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWK------------------LLEKGGILLYST 366 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEE
Confidence 458999999999988887554433222 234566666666 999999999887
Q ss_pred cc
Q 038391 180 LE 181 (186)
Q Consensus 180 ~~ 181 (186)
-.
T Consensus 367 Cs 368 (431)
T PRK14903 367 CT 368 (431)
T ss_pred CC
Confidence 54
No 18
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.49 E-value=1.4e-13 Score=114.83 Aligned_cols=115 Identities=26% Similarity=0.288 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++|.+|||+|||+|+++..+++.+++ .++|+++|+++.++.. .....++.+++.|...... .
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~ 137 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKN---EGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------A 137 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCC---CCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------h
Confidence 578999999999999999999999865 5799999999999654 1122357777787654321 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||.|++|++|+..|....+..... .+....+..+.+ +|||||+|+..+
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~------------------~lkpgG~lvYst 199 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFD------------------ALKPGGVLVYST 199 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEe
Confidence 346999999999988887655543321 233456666666 999999999775
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
-
T Consensus 200 c 200 (264)
T TIGR00446 200 C 200 (264)
T ss_pred C
Confidence 3
No 19
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.47 E-value=2.2e-13 Score=120.94 Aligned_cols=118 Identities=25% Similarity=0.279 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++|.+|||+|||+|+++.++++.+++ .++|+++|+++.++... ....+++++++|+...... ....
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~---~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~----~~~~ 322 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGD---QGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL----KPQW 322 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCC---CceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc----cccc
Confidence 577899999999999999999999864 57999999999987541 1223588888887654311 0002
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||.|++|++|+..|....+..... .+....+..+.+ +|||||+||..+
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~lkpgG~lvyst 384 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP------------------LLKPGGTLVYAT 384 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEe
Confidence 468999999999988776544333222 224566777777 999999999765
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.47 E-value=4e-13 Score=110.90 Aligned_cols=103 Identities=20% Similarity=0.365 Sum_probs=78.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
++++.+|||+|||+|.++..+++..+ +.+|+|+|+++.|+..+. ...++.++.+|+.... +..+||
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~----~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~---------~~~~fD 95 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWP----AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ---------PPQALD 95 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC---------CCCCcc
Confidence 56788999999999999999999864 479999999999986532 2346788888876442 245899
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|+++... .|..+ ....+..+.+ .|||||.+++.+..
T Consensus 96 ~v~~~~~l----~~~~d-------~~~~l~~~~~------------------~LkpgG~~~~~~~~ 132 (258)
T PRK01683 96 LIFANASL----QWLPD-------HLELFPRLVS------------------LLAPGGVLAVQMPD 132 (258)
T ss_pred EEEEccCh----hhCCC-------HHHHHHHHHH------------------hcCCCcEEEEECCC
Confidence 99997532 23323 3467777887 99999999997643
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.46 E-value=1.3e-13 Score=105.31 Aligned_cols=105 Identities=26% Similarity=0.496 Sum_probs=78.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+++.+|||+|||+|.++..+++...+ +.+++|+|+++.|+..+ ....+++|+++|+.+++.. + +
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~---~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~-----~- 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNP---GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-L-----E- 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTT---TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-S-----S-
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCC---CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-c-----C-
Confidence 46789999999999999999965443 68999999999997652 2234899999999875311 1 1
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|+++... .+..+ ...+++.+.+ .|+++|.+++..+.
T Consensus 72 ~~~D~I~~~~~l----~~~~~-------~~~~l~~~~~------------------~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVL----HHFPD-------PEKVLKNIIR------------------LLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTG----GGTSH-------HHHHHHHHHH------------------HEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCch----hhccC-------HHHHHHHHHH------------------HcCCCcEEEEEECC
Confidence 689999996431 22222 4467777777 99999999998765
No 22
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.44 E-value=6.3e-13 Score=118.37 Aligned_cols=115 Identities=28% Similarity=0.373 Sum_probs=86.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+.+|.+|||+|||+|+++.++++.++. +++|+++|+++.++... ....+++++++|+.... +
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~---------~ 315 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQN---RGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS---------P 315 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCC---CcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc---------c
Confidence 467899999999999999999998764 57999999999997541 11235788888876543 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHH-----------HHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALS-----------VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+||.|++|++|+..|....+.... .......+..+.+ +|||||+|+..+
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~------------------~lkpgG~lvyst 377 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAAS------------------LLKPGGVLVYAT 377 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCcEEEEEe
Confidence 45899999999998887754332211 1233456777777 999999999887
Q ss_pred cc
Q 038391 180 LE 181 (186)
Q Consensus 180 ~~ 181 (186)
..
T Consensus 378 cs 379 (445)
T PRK14904 378 CS 379 (445)
T ss_pred CC
Confidence 54
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=6.7e-13 Score=109.77 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=79.7
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINL 99 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~ 99 (186)
+.+++.... .++.+|||+|||+|.++..+++. +.+|+|+|+++.|+..+ ....+++++++|+.++
T Consensus 34 ~~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 34 LDRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred HHHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 334444433 45679999999999999999987 57999999999997652 2235688888887654
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
... ..++||+|++... ..+..+ ...++..+.+ +|||||++++..
T Consensus 106 ~~~-------~~~~fD~V~~~~v----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~i~~ 149 (255)
T PRK11036 106 AQH-------LETPVDLILFHAV----LEWVAD-------PKSVLQTLWS------------------VLRPGGALSLMF 149 (255)
T ss_pred hhh-------cCCCCCEEEehhH----HHhhCC-------HHHHHHHHHH------------------HcCCCeEEEEEE
Confidence 311 3578999998432 111222 3467777887 999999999876
Q ss_pred ccC
Q 038391 180 LES 182 (186)
Q Consensus 180 ~~~ 182 (186)
+..
T Consensus 150 ~n~ 152 (255)
T PRK11036 150 YNA 152 (255)
T ss_pred ECc
Confidence 653
No 24
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.43 E-value=1.4e-13 Score=95.35 Aligned_cols=92 Identities=33% Similarity=0.517 Sum_probs=69.1
Q ss_pred EEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 44 LDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 44 LDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
||+|||+|..+..+++. + +.+|+|+|+++.++.. .....++.+.++|+.+++. ++++||+|++.
T Consensus 1 LdiG~G~G~~~~~l~~~-~----~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--------~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G----GASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPF--------PDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T----TCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS---------TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-c----CCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcc--------ccccccccccc
Confidence 89999999999999998 3 5899999999998755 2234556688899887764 36899999994
Q ss_pred CCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 121 MCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
.. .+.. +....+++++.| +|||||+++|
T Consensus 68 ~~-----~~~~------~~~~~~l~e~~r------------------vLk~gG~l~~ 95 (95)
T PF08241_consen 68 SV-----LHHL------EDPEAALREIYR------------------VLKPGGRLVI 95 (95)
T ss_dssp SH-----GGGS------SHHHHHHHHHHH------------------HEEEEEEEEE
T ss_pred cc-----eeec------cCHHHHHHHHHH------------------HcCcCeEEeC
Confidence 32 2222 226788889998 9999999986
No 25
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.43 E-value=1.2e-13 Score=111.14 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=89.1
Q ss_pred hhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeec
Q 038391 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVI 97 (186)
Q Consensus 19 y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~ 97 (186)
-|.|.+..|...+. +....+|.|||||+|..|..++++++ +..++|+|-|+.|++++ ..-.+++|.++|+.
T Consensus 14 eRtRPa~dLla~Vp----~~~~~~v~DLGCGpGnsTelL~~RwP----~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~ 85 (257)
T COG4106 14 ERTRPARDLLARVP----LERPRRVVDLGCGPGNSTELLARRWP----DAVITGIDSSPAMLAKAAQRLPDATFEEADLR 85 (257)
T ss_pred hccCcHHHHHhhCC----ccccceeeecCCCCCHHHHHHHHhCC----CCeEeeccCCHHHHHHHHHhCCCCceecccHh
Confidence 46666665554333 34567999999999999999999996 69999999999999884 34578999999987
Q ss_pred CCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 98 NLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 98 ~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
... +...+|++++|+ ..+|..+| ..-+.. ... .|.|||.|.+
T Consensus 86 ~w~---------p~~~~dllfaNA----vlqWlpdH------~~ll~r-L~~------------------~L~Pgg~LAV 127 (257)
T COG4106 86 TWK---------PEQPTDLLFANA----VLQWLPDH------PELLPR-LVS------------------QLAPGGVLAV 127 (257)
T ss_pred hcC---------CCCccchhhhhh----hhhhcccc------HHHHHH-HHH------------------hhCCCceEEE
Confidence 664 456899999986 45666665 222222 222 7999999999
Q ss_pred EEccC
Q 038391 178 KLLES 182 (186)
Q Consensus 178 ~~~~~ 182 (186)
++-..
T Consensus 128 QmPdN 132 (257)
T COG4106 128 QMPDN 132 (257)
T ss_pred ECCCc
Confidence 98654
No 26
>PRK04266 fibrillarin; Provisional
Probab=99.41 E-value=1.6e-12 Score=106.30 Aligned_cols=104 Identities=24% Similarity=0.258 Sum_probs=76.4
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..++++.+|||+|||+|.++..+++.++ .++|+|+|+++.|++. +....++.++.+|+.+.... ..+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~----~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~--~~l--- 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE----EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERY--AHV--- 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchh--hhc---
Confidence 3478999999999999999999999874 3799999999988653 23335788889988653110 011
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..+||+|+++++ ..+ ....++.++.+ +|||||.++|.
T Consensus 139 ~~~~D~i~~d~~-------~p~------~~~~~L~~~~r------------------~LKpGG~lvI~ 175 (226)
T PRK04266 139 VEKVDVIYQDVA-------QPN------QAEIAIDNAEF------------------FLKDGGYLLLA 175 (226)
T ss_pred cccCCEEEECCC-------Chh------HHHHHHHHHHH------------------hcCCCcEEEEE
Confidence 246999998753 111 12346778887 99999999995
No 27
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.41 E-value=1.8e-13 Score=111.71 Aligned_cols=105 Identities=26% Similarity=0.348 Sum_probs=72.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
+|.+|||+|||-|.++..+|+. |.+|+|+|+++.+|..++....-+-+..|.... .++++...+++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~---~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESGVNIDYRQA---TVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhccccccchhh---hHHHHHhcCCCccEEE
Confidence 7899999999999999999998 789999999999987644222111222222211 2233333358999999
Q ss_pred eCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|.- ...|-.+ .+.++..+.+ ++||||.+++++.+
T Consensus 130 cmE----VlEHv~d-------p~~~~~~c~~------------------lvkP~G~lf~STin 163 (243)
T COG2227 130 CME----VLEHVPD-------PESFLRACAK------------------LVKPGGILFLSTIN 163 (243)
T ss_pred Ehh----HHHccCC-------HHHHHHHHHH------------------HcCCCcEEEEeccc
Confidence 931 1123333 4567777887 99999999999875
No 28
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=1.2e-12 Score=116.08 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
+.+|.+|||+|||+|+++..+++.++ +++|+++|+++.++... ....+++++++|+.+.... . ..
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~----~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~-----~-~~ 311 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAP----QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQW-----W-DG 311 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcC----CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhh-----c-cc
Confidence 57889999999999999999999863 37999999999997541 1222467888888754211 0 24
Q ss_pred CCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.+||.|++|++|+..|....+.. .........+..+.+ +|||||+|++.+-
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~------------------~LkpGG~lvystc 373 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWP------------------LLKPGGTLLYATC 373 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEeC
Confidence 68999999999877665322211 112334567777777 9999999997763
No 29
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.41 E-value=1.4e-12 Score=115.47 Aligned_cols=118 Identities=21% Similarity=0.247 Sum_probs=82.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+++|.+|||+|||+|+++..+++.++ .++|+++|+++.++... .....+.+..+|....... .
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~----~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~------~ 305 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAP----QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW------A 305 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcC----CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc------c
Confidence 57789999999999999999999875 37999999999996541 1111233345554433210 0
Q ss_pred CCCCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
...+||.|++|++|+..|.....+. ....+....+..+.+ +|||||+|+..
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~------------------~LkpgG~lvys 367 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWP------------------LLKTGGTLVYA 367 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCcEEEEE
Confidence 2468999999999988876433222 122345567777777 99999999988
Q ss_pred EccC
Q 038391 179 LLES 182 (186)
Q Consensus 179 ~~~~ 182 (186)
+.+-
T Consensus 368 tcs~ 371 (426)
T TIGR00563 368 TCSV 371 (426)
T ss_pred eCCC
Confidence 7643
No 30
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.40 E-value=2.8e-12 Score=93.39 Aligned_cols=101 Identities=17% Similarity=0.278 Sum_probs=74.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|.++..+++.++ +.+|+++|+++.++... ....+++++.+|+...... .
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~----~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 85 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVP----NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------S 85 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC----CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------h
Confidence 56678999999999999999999874 47999999999986541 1224677777776532111 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+||.|++... .. .....++.+.+ .|||||+|++...
T Consensus 86 ~~~~D~v~~~~~--------~~------~~~~~l~~~~~------------------~Lk~gG~li~~~~ 123 (124)
T TIGR02469 86 LPEPDRVFIGGS--------GG------LLQEILEAIWR------------------RLRPGGRIVLNAI 123 (124)
T ss_pred cCCCCEEEECCc--------ch------hHHHHHHHHHH------------------HcCCCCEEEEEec
Confidence 358999998542 11 13467888888 9999999999864
No 31
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.40 E-value=1e-12 Score=112.68 Aligned_cols=102 Identities=17% Similarity=0.266 Sum_probs=76.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------CCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------CDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|.++..+++. +.+|+|||+++.++..++ ...+++++++|+.+++. .
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--------~ 195 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--------E 195 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--------c
Confidence 35679999999999999999875 579999999999976521 12368888888765432 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++||+|++.. ...|..+ ...++..+.+ +|||||.++|.+++.
T Consensus 196 ~~~FD~Vi~~~----vLeHv~d-------~~~~L~~l~r------------------~LkPGG~liist~nr 238 (322)
T PLN02396 196 GRKFDAVLSLE----VIEHVAN-------PAEFCKSLSA------------------LTIPNGATVLSTINR 238 (322)
T ss_pred cCCCCEEEEhh----HHHhcCC-------HHHHHHHHHH------------------HcCCCcEEEEEECCc
Confidence 56899999832 1122222 4567888887 999999999998764
No 32
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.40 E-value=1.9e-13 Score=122.35 Aligned_cols=125 Identities=21% Similarity=0.181 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++|.+|||+|||+|+.|.++++.+++ .+.|+++|+++.++.. .....++.+...|...+... .
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~---~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~-------~ 180 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNN---QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA-------L 180 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh-------c
Confidence 578999999999999999999999875 5799999999988543 11224556666665543211 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCC-CCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDS-STDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~LkpgG~lvi~~ 179 (186)
...||.|++|++|+..|+...+.....++...-+....+ .|.++ ++|..+|||||+||-++
T Consensus 181 ~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~--------lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 181 PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAA--------TQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHH--------HHHHHHHHHHHHcCCCcEEEEEC
Confidence 357999999999999999887765544433222222222 22223 33334999999998654
No 33
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.39 E-value=6.1e-13 Score=101.00 Aligned_cols=100 Identities=27% Similarity=0.437 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.+++.+|||+|||+|.++..+++. +.+|+|+|+++.++.. ........+...... +.++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK----RNVVFDNFDAQDPPF--------PDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH----TTSEEEEEECHTHHC--------HSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh----hhhhhhhhhhhhhhc--------cccchhh
Confidence 577889999999999999999776 4699999999998765 222222222221111 3679999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
|+|.. ..+.... ...++..+.+ +|||||.+++......
T Consensus 82 i~~~~-----~l~~~~d------~~~~l~~l~~------------------~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 82 IICND-----VLEHLPD------PEEFLKELSR------------------LLKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEES-----SGGGSSH------HHHHHHHHHH------------------CEEEEEEEEEEEEBTT
T ss_pred HhhHH-----HHhhccc------HHHHHHHHHH------------------hcCCCCEEEEEEcCCc
Confidence 99953 2222221 5678888887 9999999999988753
No 34
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.39 E-value=4.9e-13 Score=104.47 Aligned_cols=104 Identities=24% Similarity=0.347 Sum_probs=75.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||+|||+|.++..+++..+ ..+|+++|+++.++..+ +...+++++..|+.+.. +..
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~----~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~ 97 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP----DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDG 97 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST----CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTT
T ss_pred cCCeEEEecCChHHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccc
Confidence 677999999999999999999864 36899999999996541 22223888888876532 247
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+||+|++|+|.+... .........++..+.+ .|||||.|++..
T Consensus 98 ~fD~Iv~NPP~~~~~------~~~~~~~~~~i~~a~~------------------~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGG------DDGLDLLRDFIEQARR------------------YLKPGGRLFLVI 140 (170)
T ss_dssp CEEEEEE---SBTTS------HCHHHHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred ceeEEEEccchhccc------ccchhhHHHHHHHHHH------------------hccCCCEEEEEe
Confidence 999999997622222 2234457788888888 999999997744
No 35
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.39 E-value=2.2e-12 Score=114.83 Aligned_cols=115 Identities=25% Similarity=0.294 Sum_probs=83.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++++.+|||+|||+|+++..+++.+++ .++|+++|+++.++... ....+++++++|+.+.... .
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~---~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-------~ 317 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKN---TGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK-------F 317 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch-------h
Confidence 577899999999999999999998754 57999999999986431 1223588889988765321 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||+|++|++|+..|....+.. ....+....+..+.+ +|||||+|+..+
T Consensus 318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~------------------~LkpGG~lvyst 379 (444)
T PRK14902 318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQ------------------YLKKGGILVYST 379 (444)
T ss_pred cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHH------------------HcCCCCEEEEEc
Confidence 258999999998876665332111 112234567777777 999999999544
No 36
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.38 E-value=1.9e-12 Score=107.98 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=78.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++++.+|||+|||+|..+..+++.+ +++|+|+|+++.++..+ ....++.+..+|+...+. +++
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~--------~~~ 116 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY-----GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDF--------PEN 116 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc-----CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCC--------CCC
Confidence 6788999999999999999998764 47999999999986542 123568888888875432 357
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++... ..|.. .+....++..+.+ +|||||.|++..+.
T Consensus 117 ~FD~V~s~~~----l~h~~-----~~d~~~~l~~i~r------------------~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 117 TFDMIYSRDA----ILHLS-----YADKKKLFEKCYK------------------WLKPNGILLITDYC 158 (263)
T ss_pred CeEEEEEhhh----HHhCC-----HHHHHHHHHHHHH------------------HcCCCcEEEEEEec
Confidence 8999998321 11211 1124578888888 99999999998764
No 37
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.38 E-value=1.7e-12 Score=108.02 Aligned_cols=105 Identities=30% Similarity=0.459 Sum_probs=78.9
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++.++. .++|+|+|+++.|++.++ ...+++++++|+.+++.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~---~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~-------- 142 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGP---TGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV-------- 142 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCC---CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC--------
Confidence 3578999999999999999888887754 468999999999976521 22478888888766542
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++++||+|+++.. ..+..+ ....+.++.+ +|||||+|++..+
T Consensus 143 ~~~~fD~Vi~~~v----~~~~~d-------~~~~l~~~~r------------------~LkpGG~l~i~~~ 184 (272)
T PRK11873 143 ADNSVDVIISNCV----INLSPD-------KERVFKEAFR------------------VLKPGGRFAISDV 184 (272)
T ss_pred CCCceeEEEEcCc----ccCCCC-------HHHHHHHHHH------------------HcCCCcEEEEEEe
Confidence 3568999998642 122222 3467788888 9999999999754
No 38
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.37 E-value=3.3e-12 Score=101.71 Aligned_cols=103 Identities=22% Similarity=0.217 Sum_probs=77.0
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
...++++.+|||+|||+|..+..+++..+ +++|+|+|+++.|+..+ ....+++++++|+.+..
T Consensus 40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~----~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~------- 108 (187)
T PRK00107 40 APYLPGGERVLDVGSGAGFPGIPLAIARP----ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG------- 108 (187)
T ss_pred HhhcCCCCeEEEEcCCCCHHHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-------
Confidence 34466789999999999999999998754 58999999999987531 12235889999876543
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|+++. ... ...++..+.+ .|||||++++.....
T Consensus 109 --~~~~fDlV~~~~------~~~---------~~~~l~~~~~------------------~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 109 --QEEKFDVVTSRA------VAS---------LSDLVELCLP------------------LLKPGGRFLALKGRD 148 (187)
T ss_pred --CCCCccEEEEcc------ccC---------HHHHHHHHHH------------------hcCCCeEEEEEeCCC
Confidence 135899999853 111 3467777777 999999999876543
No 39
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.37 E-value=1.5e-12 Score=107.44 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=86.1
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-------CcCCCCCeEEEEeeecCCChhhH
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-------SLHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-------~~~~~~~~~~~~~d~~~~~~~~l 104 (186)
..+...+...+|||+|||+|..+..++++.. ..+++|||+++.+.. .+....+++++++|+.+.....
T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~----~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~- 111 (248)
T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTE----KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL- 111 (248)
T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCC----CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc-
Confidence 3344445578999999999999999999965 389999999999843 3567789999999988765321
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCc-ccchHHH------HHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGIT-TKDAALS------VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
...+||+|+||+|....+.. ..+.... .-..+.++..+.+ +|||||.+.+
T Consensus 112 -----~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~------------------~lk~~G~l~~ 168 (248)
T COG4123 112 -----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAK------------------LLKPGGRLAF 168 (248)
T ss_pred -----cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHH------------------HccCCCEEEE
Confidence 23479999999875433333 1211111 1124566666666 9999999988
Q ss_pred EEc
Q 038391 178 KLL 180 (186)
Q Consensus 178 ~~~ 180 (186)
.+-
T Consensus 169 V~r 171 (248)
T COG4123 169 VHR 171 (248)
T ss_pred Eec
Confidence 653
No 40
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.37 E-value=2.5e-12 Score=102.81 Aligned_cols=104 Identities=21% Similarity=0.266 Sum_probs=73.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.. ....++++...|+...+ ..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~ 93 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT---------FD 93 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC---------cC
Confidence 45679999999999999999986 57999999999987541 11234677777765442 13
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE-EEccCC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI-KLLESQ 183 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi-~~~~~~ 183 (186)
++||+|++... .+... ......++..+.+ +|||||.+++ ..+..+
T Consensus 94 ~~fD~I~~~~~-----~~~~~----~~~~~~~l~~i~~------------------~LkpgG~~~~~~~~~~~ 139 (197)
T PRK11207 94 GEYDFILSTVV-----LMFLE----AKTIPGLIANMQR------------------CTKPGGYNLIVAAMDTA 139 (197)
T ss_pred CCcCEEEEecc-----hhhCC----HHHHHHHHHHHHH------------------HcCCCcEEEEEEEecCC
Confidence 57999999542 22221 1235577888887 9999999654 555443
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.37 E-value=2.5e-12 Score=103.70 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=83.1
Q ss_pred HHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCCh
Q 038391 24 AFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPS 101 (186)
Q Consensus 24 ~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~ 101 (186)
...+.+...... ..++.+|||+|||+|.++..+++..+ ..+++++|+++.++... ....+++++.+|+...+.
T Consensus 20 ~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 94 (240)
T TIGR02072 20 AKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRFP----QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPL 94 (240)
T ss_pred HHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhCC----CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCC
Confidence 334555444432 23347999999999999999999864 47899999999987542 222467888888876542
Q ss_pred hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 102 NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|+++... .+..+ ....+..+.+ .|||||.+++..+.
T Consensus 95 --------~~~~fD~vi~~~~l----~~~~~-------~~~~l~~~~~------------------~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 95 --------EDSSFDLIVSNLAL----QWCDD-------LSQALSELAR------------------VLKPGGLLAFSTFG 137 (240)
T ss_pred --------CCCceeEEEEhhhh----hhccC-------HHHHHHHHHH------------------HcCCCcEEEEEeCC
Confidence 35689999996531 22222 3467777887 99999999998765
Q ss_pred CC
Q 038391 182 SQ 183 (186)
Q Consensus 182 ~~ 183 (186)
..
T Consensus 138 ~~ 139 (240)
T TIGR02072 138 PG 139 (240)
T ss_pred cc
Confidence 43
No 42
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.36 E-value=3.8e-12 Score=113.88 Aligned_cols=109 Identities=26% Similarity=0.325 Sum_probs=81.6
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhH
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l 104 (186)
+..... ++++.+|||+|||+|..+..+++.+ +.+|+|+|+|+.++..+ ....++++.++|+...+.
T Consensus 258 l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~--- 328 (475)
T PLN02336 258 FVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-----DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTY--- 328 (475)
T ss_pred HHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCC---
Confidence 344433 5778899999999999999999875 47999999999987542 223468898998876542
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+.++||+|++.. ...|..+ ...++.++.+ +|||||.|++..+.
T Consensus 329 -----~~~~fD~I~s~~----~l~h~~d-------~~~~l~~~~r------------------~LkpgG~l~i~~~~ 371 (475)
T PLN02336 329 -----PDNSFDVIYSRD----TILHIQD-------KPALFRSFFK------------------WLKPGGKVLISDYC 371 (475)
T ss_pred -----CCCCEEEEEECC----cccccCC-------HHHHHHHHHH------------------HcCCCeEEEEEEec
Confidence 356899999953 2233333 4567888888 99999999998764
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=3.8e-12 Score=109.15 Aligned_cols=114 Identities=25% Similarity=0.368 Sum_probs=80.6
Q ss_pred hHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEee
Q 038391 23 SAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSAD 95 (186)
Q Consensus 23 ~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d 95 (186)
+.++...+...+..+ ++.+|||+|||+|.++..++... ..+|+|+|+|+.++.. .....++.++.+|
T Consensus 107 s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g-----~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d 180 (322)
T PRK15068 107 SDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAG-----AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLG 180 (322)
T ss_pred HHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcC-----CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCC
Confidence 334444444454433 57899999999999999999872 2479999999987643 1123578888887
Q ss_pred ecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEE
Q 038391 96 VINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175 (186)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~l 175 (186)
+.+++. .++||+|+|... ..|..+ ...++..+.+ .|+|||.|
T Consensus 181 ~e~lp~---------~~~FD~V~s~~v----l~H~~d-------p~~~L~~l~~------------------~LkpGG~l 222 (322)
T PRK15068 181 IEQLPA---------LKAFDTVFSMGV----LYHRRS-------PLDHLKQLKD------------------QLVPGGEL 222 (322)
T ss_pred HHHCCC---------cCCcCEEEECCh----hhccCC-------HHHHHHHHHH------------------hcCCCcEE
Confidence 765532 468999999432 223333 4467888888 99999999
Q ss_pred EEEEc
Q 038391 176 VIKLL 180 (186)
Q Consensus 176 vi~~~ 180 (186)
++..+
T Consensus 223 vl~~~ 227 (322)
T PRK15068 223 VLETL 227 (322)
T ss_pred EEEEE
Confidence 99865
No 44
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.35 E-value=4.8e-12 Score=108.15 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=80.8
Q ss_pred hhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEE
Q 038391 21 ARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVS 93 (186)
Q Consensus 21 ~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~ 93 (186)
.++.++...+..... ..++.+|||+|||+|.++..++... ...|+|+|+|+.|+.. .....++.+..
T Consensus 104 ~~s~~~~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g-----~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~ 177 (314)
T TIGR00452 104 WRSDIKWDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHG-----AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP 177 (314)
T ss_pred HHHHHHHHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcC-----CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 344445555555544 3557899999999999998888762 2479999999988643 12234666776
Q ss_pred eeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCc
Q 038391 94 ADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173 (186)
Q Consensus 94 ~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG 173 (186)
.++.+++. ..+||+|++.. ...|..+ ...++.++.+ .|||||
T Consensus 178 ~~ie~lp~---------~~~FD~V~s~g----vL~H~~d-------p~~~L~el~r------------------~LkpGG 219 (314)
T TIGR00452 178 LGIEQLHE---------LYAFDTVFSMG----VLYHRKS-------PLEHLKQLKH------------------QLVIKG 219 (314)
T ss_pred CCHHHCCC---------CCCcCEEEEcc----hhhccCC-------HHHHHHHHHH------------------hcCCCC
Confidence 66654431 34899999954 2234333 4567888888 999999
Q ss_pred EEEEEEcc
Q 038391 174 HLVIKLLE 181 (186)
Q Consensus 174 ~lvi~~~~ 181 (186)
.|++.++.
T Consensus 220 ~Lvletl~ 227 (314)
T TIGR00452 220 ELVLETLV 227 (314)
T ss_pred EEEEEEEE
Confidence 99998654
No 45
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.34 E-value=5.6e-12 Score=101.34 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=57.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.++++.+|||+|||+|..+..+++.++. .++|+++|+++.++..+ ....+++++.+|+.....
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~---~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------- 138 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIER---RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------- 138 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-------
Confidence 3578899999999999999999998754 47999999999986531 122358888888865321
Q ss_pred CCCCCccEEEeCC
Q 038391 109 PKQKGFSVILSDM 121 (186)
Q Consensus 109 ~~~~~~D~V~~d~ 121 (186)
...+||.|+++.
T Consensus 139 -~~~~fD~Ii~~~ 150 (205)
T PRK13944 139 -KHAPFDAIIVTA 150 (205)
T ss_pred -cCCCccEEEEcc
Confidence 235899999964
No 46
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.34 E-value=1.9e-12 Score=105.05 Aligned_cols=114 Identities=17% Similarity=0.268 Sum_probs=80.1
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----C--------------CCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----H--------------CDAR 88 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~--------------~~~~ 88 (186)
|.+...... ++++.+|||+|||.|..+..++++ |.+|+|+|+|+.+++.. . ...+
T Consensus 23 l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (213)
T TIGR03840 23 LVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGN 95 (213)
T ss_pred HHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCc
Confidence 444444322 357789999999999999999997 68999999999987641 0 1246
Q ss_pred eEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcc
Q 038391 89 VQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGV 168 (186)
Q Consensus 89 ~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (186)
++++++|+.++... ....||.|+.... ..+. . .+.....+..+.+ +
T Consensus 96 v~~~~~D~~~~~~~-------~~~~fD~i~D~~~----~~~l-~----~~~R~~~~~~l~~------------------l 141 (213)
T TIGR03840 96 IEIFCGDFFALTAA-------DLGPVDAVYDRAA----LIAL-P----EEMRQRYAAHLLA------------------L 141 (213)
T ss_pred eEEEEccCCCCCcc-------cCCCcCEEEechh----hccC-C----HHHHHHHHHHHHH------------------H
Confidence 88889998876532 1357999987432 1121 1 2345567777777 9
Q ss_pred cccCcEEEEEEcc
Q 038391 169 LKPGGHLVIKLLE 181 (186)
Q Consensus 169 LkpgG~lvi~~~~ 181 (186)
|||||++++..+.
T Consensus 142 LkpgG~~ll~~~~ 154 (213)
T TIGR03840 142 LPPGARQLLITLD 154 (213)
T ss_pred cCCCCeEEEEEEE
Confidence 9999987777664
No 47
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.34 E-value=4.5e-12 Score=104.56 Aligned_cols=104 Identities=20% Similarity=0.378 Sum_probs=76.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|..+..+++.+.. ++.+|+|+|+|+.|++.+ ....+++++++|+.+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~--~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------- 122 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHH--DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------- 122 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------
Confidence 467889999999999999999886421 268999999999998652 22347899999886553
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...+|+|+++.. .+.... ......+.++.+ .|||||.|++..
T Consensus 123 -~~~~D~vv~~~~-----l~~l~~----~~~~~~l~~i~~------------------~LkpGG~l~l~e 164 (247)
T PRK15451 123 -IENASMVVLNFT-----LQFLEP----SERQALLDKIYQ------------------GLNPGGALVLSE 164 (247)
T ss_pred -CCCCCEEehhhH-----HHhCCH----HHHHHHHHHHHH------------------hcCCCCEEEEEE
Confidence 235899988542 222221 124567788887 999999999875
No 48
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.34 E-value=4.7e-12 Score=108.61 Aligned_cols=116 Identities=23% Similarity=0.225 Sum_probs=83.6
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
..++++.+|||+|||+|.++..++.. +.+|+|+|+++.|+..+ ....++.+.++|+.+++..
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~------ 245 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS------ 245 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc------
Confidence 34688999999999999999887664 57999999999997541 1123377888998776432
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
.++||+|++|+++....... ......+...++..+.+ .|||||++++.+-...+
T Consensus 246 --~~~~D~Iv~dPPyg~~~~~~--~~~~~~l~~~~l~~~~r------------------~Lk~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 246 --SESVDAIATDPPYGRSTTAA--GDGLESLYERSLEEFHE------------------VLKSEGWIVYAVPTRID 299 (329)
T ss_pred --cCCCCEEEECCCCcCccccc--CCchHHHHHHHHHHHHH------------------HccCCcEEEEEEcCCCC
Confidence 46899999998743321111 11123456778888888 99999999988766544
No 49
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=8.2e-13 Score=114.63 Aligned_cols=119 Identities=31% Similarity=0.373 Sum_probs=85.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++|++|||+|+++|+.|.++++.+.+ .+..|+++|+++..+.. +....++..++.|........ .
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~--~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~-----~ 225 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMEN--EGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL-----P 225 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCC--CCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc-----c
Confidence 3688999999999999999999999875 25678999999988654 122334666777765443211 1
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
...+||.|++|++|+..|....+..... .+..+.+..+.+ +|||||+||-+
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~------------------~lk~GG~LVYS 287 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALK------------------LLKPGGVLVYS 287 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEE
Confidence 1236999999999999998755444433 344455555555 99999999966
Q ss_pred E
Q 038391 179 L 179 (186)
Q Consensus 179 ~ 179 (186)
+
T Consensus 288 T 288 (355)
T COG0144 288 T 288 (355)
T ss_pred c
Confidence 5
No 50
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.33 E-value=4.8e-12 Score=102.26 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=58.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..+. .++|+++|+++.+++.+ ....+++++.+|......
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~~~~---~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~-------- 142 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE-------- 142 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------
Confidence 3688999999999999999999998754 46899999999987542 122578899888765321
Q ss_pred CCCCccEEEeCC
Q 038391 110 KQKGFSVILSDM 121 (186)
Q Consensus 110 ~~~~~D~V~~d~ 121 (186)
...+||+|+++.
T Consensus 143 ~~~~fD~Ii~~~ 154 (215)
T TIGR00080 143 PLAPYDRIYVTA 154 (215)
T ss_pred ccCCCCEEEEcC
Confidence 135899999865
No 51
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.33 E-value=3.6e-12 Score=101.69 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=68.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++.+|||+|||+|.++..++++ +.+|+|+|+++.++... ...-++++...|+.... ..++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---------~~~~ 94 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA---------LNED 94 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc---------ccCC
Confidence 4569999999999999999986 57999999999997641 11113555566654332 1357
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
||+|++... .+..+ .......+..+.+ .|||||+++|..+
T Consensus 95 fD~I~~~~~-----~~~~~----~~~~~~~l~~~~~------------------~LkpgG~lli~~~ 134 (195)
T TIGR00477 95 YDFIFSTVV-----FMFLQ----AGRVPEIIANMQA------------------HTRPGGYNLIVAA 134 (195)
T ss_pred CCEEEEecc-----cccCC----HHHHHHHHHHHHH------------------HhCCCcEEEEEEe
Confidence 999998543 12221 1224567777787 9999999655443
No 52
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.33 E-value=8.7e-13 Score=95.80 Aligned_cols=109 Identities=31% Similarity=0.433 Sum_probs=75.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
|.+|||+|||+|.++..+++.. ..+++|+|+++..++. .....+++++++|+..... .+ ..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~----~~--~~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE----PL--PDG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH----TC--TTT
T ss_pred CCEEEEcCcchHHHHHHHHHHC-----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh----hc--cCc
Confidence 5689999999999999999984 2799999999988543 3345679999999865431 11 368
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+||+|++|++..... .......+....+++.+.+ +|||||.+++.+.
T Consensus 70 ~~D~Iv~npP~~~~~---~~~~~~~~~~~~~~~~~~~------------------~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 70 KFDLIVTNPPYGPRS---GDKAALRRLYSRFLEAAAR------------------LLKPGGVLVFITP 116 (117)
T ss_dssp -EEEEEE--STTSBT---T----GGCHHHHHHHHHHH------------------HEEEEEEEEEEEE
T ss_pred eeEEEEECCCCcccc---ccchhhHHHHHHHHHHHHH------------------HcCCCeEEEEEeC
Confidence 999999998743211 1111111245577777887 9999999998653
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.33 E-value=6.3e-12 Score=99.48 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=70.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
+.+|||+|||+|..+..++...+ +++|+|+|+++.|+.. .....+++++++|+.+.. ..++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~----~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---------~~~~ 109 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARP----ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---------HEEQ 109 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCC----CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---------ccCC
Confidence 78999999999999999987643 4799999999988643 112246899999887642 2468
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|+++. .+. ....++.+.+ +|+|||.+++..
T Consensus 110 fD~I~s~~------~~~---------~~~~~~~~~~------------------~LkpgG~lvi~~ 142 (181)
T TIGR00138 110 FDVITSRA------LAS---------LNVLLELTLN------------------LLKVGGYFLAYK 142 (181)
T ss_pred ccEEEehh------hhC---------HHHHHHHHHH------------------hcCCCCEEEEEc
Confidence 99999843 111 2345566676 999999999864
No 54
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.33 E-value=3.9e-12 Score=111.14 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=75.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------C--CCCeEEEEeeecCCChhhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------C--DARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~--~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+.+|||+|||+|.++..++++.+ ..+|+++|+|+.+++.++ . ..+++++..|+.+.. .
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P----~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~---------~ 295 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNP----QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------E 295 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---------C
Confidence 46999999999999999999864 489999999998876521 1 135777777764321 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+||+|+||++++.... .. .+....++..+.+ .|+|||.|+|..
T Consensus 296 ~~~fDlIlsNPPfh~~~~--~~----~~ia~~l~~~a~~------------------~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHA--LT----DNVAWEMFHHARR------------------CLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCcc--CC----HHHHHHHHHHHHH------------------hcccCCEEEEEE
Confidence 458999999987554321 11 1234567777787 999999999875
No 55
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.32 E-value=6.5e-12 Score=101.57 Aligned_cols=76 Identities=20% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
..++++.+|||+|||+|+.+..+++.++. .++|+++|+++.++..+ ....+++++++|......
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~---~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~------- 141 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGK---SGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE------- 141 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-------
Confidence 34688999999999999999999998754 57999999999996541 123478999998765421
Q ss_pred CCCCCccEEEeCC
Q 038391 109 PKQKGFSVILSDM 121 (186)
Q Consensus 109 ~~~~~~D~V~~d~ 121 (186)
+..+||+|+++.
T Consensus 142 -~~~~fD~I~~~~ 153 (212)
T PRK13942 142 -ENAPYDRIYVTA 153 (212)
T ss_pred -cCCCcCEEEECC
Confidence 246899999854
No 56
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.31 E-value=4.6e-12 Score=89.75 Aligned_cols=93 Identities=20% Similarity=0.378 Sum_probs=53.3
Q ss_pred EEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC------CCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 44 LDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC------DARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 44 LDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~------~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
||+|||+|.++..+.+.++ ..+++|+|+|+.|+..++. ......+..+..+..... ..++||+|
T Consensus 1 LdiGcG~G~~~~~l~~~~~----~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----DARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD------PPESFDLV 70 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC------C----SEE
T ss_pred CEeCccChHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc------ccccccee
Confidence 7999999999999999974 5899999999999955221 122333333332221110 12599999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEE
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~l 175 (186)
++... .+... -...++..+.+ +|||||+|
T Consensus 71 ~~~~v-----l~~l~------~~~~~l~~~~~------------------~L~pgG~l 99 (99)
T PF08242_consen 71 VASNV-----LHHLE------DIEAVLRNIYR------------------LLKPGGIL 99 (99)
T ss_dssp EEE-T-----TS--S-------HHHHHHHHTT------------------T-TSS-EE
T ss_pred hhhhh-----Hhhhh------hHHHHHHHHHH------------------HcCCCCCC
Confidence 98432 22222 25688888888 99999986
No 57
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.31 E-value=2.1e-11 Score=102.77 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=79.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++.+|||+|||+|.++..++...+ +.+|+|+|+|+.++..+ ....+++++++|+.+.. +
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---------~ 186 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---------P 186 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc---------C
Confidence 3457999999999999999999864 47999999999997541 22346889999875421 2
Q ss_pred CCCccEEEeCCCCCCCCCc-cc----chH---------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 111 QKGFSVILSDMCPSVSGIT-TK----DAA---------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~-~~----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
..+||+|++|++....... .. .++ ...+.....+..+.+ .|+|||+++
T Consensus 187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~------------------~L~~gG~l~ 248 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAAD------------------HLNENGVLV 248 (284)
T ss_pred CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHH------------------hcCCCCEEE
Confidence 4579999999764222110 00 001 123445677777777 999999999
Q ss_pred EEEcc
Q 038391 177 IKLLE 181 (186)
Q Consensus 177 i~~~~ 181 (186)
+.+-+
T Consensus 249 ~e~g~ 253 (284)
T TIGR03533 249 VEVGN 253 (284)
T ss_pred EEECc
Confidence 88754
No 58
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.31 E-value=9.4e-13 Score=93.91 Aligned_cols=96 Identities=23% Similarity=0.350 Sum_probs=65.6
Q ss_pred EEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 43 VLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 43 vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
|||+|||+|..+..+.+.+.. ++..+++|+|+++.|+... ....+++++++|+.+++. ..++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~-~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~--------~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA-GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF--------SDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH--------HSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhh-cccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc--------cCCCeeEE
Confidence 799999999999999998722 1137999999999997651 122488999999977542 25699999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCc
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGG 173 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG 173 (186)
++.+. ...+ .. .+....+++.+.+ +|||||
T Consensus 72 ~~~~~---~~~~-~~----~~~~~~ll~~~~~------------------~l~pgG 101 (101)
T PF13649_consen 72 VCSGL---SLHH-LS----PEELEALLRRIAR------------------LLRPGG 101 (101)
T ss_dssp EE-TT---GGGG-SS----HHHHHHHHHHHHH------------------TEEEEE
T ss_pred EEcCC---ccCC-CC----HHHHHHHHHHHHH------------------HhCCCC
Confidence 99431 1112 22 3446677777777 999998
No 59
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=7.9e-12 Score=104.86 Aligned_cols=115 Identities=25% Similarity=0.365 Sum_probs=86.4
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
|+..+...+. +++|.+|||||||-|.+++++++.+ +.+|+|+++|+++... .....+++++..|..+
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-----~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-----GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-----CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 4444444444 7999999999999999999999998 5899999999988533 3455678888888766
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+. ++||-|++-......| .+.....+..+.+ +|+|||.+++.
T Consensus 134 ~~-----------e~fDrIvSvgmfEhvg---------~~~~~~ff~~~~~------------------~L~~~G~~llh 175 (283)
T COG2230 134 FE-----------EPFDRIVSVGMFEHVG---------KENYDDFFKKVYA------------------LLKPGGRMLLH 175 (283)
T ss_pred cc-----------cccceeeehhhHHHhC---------cccHHHHHHHHHh------------------hcCCCceEEEE
Confidence 53 4599999832211111 2335578888888 99999999998
Q ss_pred EccCCC
Q 038391 179 LLESQD 184 (186)
Q Consensus 179 ~~~~~~ 184 (186)
.+...+
T Consensus 176 ~I~~~~ 181 (283)
T COG2230 176 SITGPD 181 (283)
T ss_pred EecCCC
Confidence 877654
No 60
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.29 E-value=8.7e-12 Score=99.54 Aligned_cols=106 Identities=23% Similarity=0.307 Sum_probs=71.5
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhh
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
.....++ ++++||+|||.|..+.+++++ |..|+++|+|+..++. ....-.+++...|+.....
T Consensus 24 ~a~~~~~-~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~----- 91 (192)
T PF03848_consen 24 EAVPLLK-PGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF----- 91 (192)
T ss_dssp HHCTTS--SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS------
T ss_pred HHHhhcC-CCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc-----
Confidence 3344454 569999999999999999998 7899999999988765 1223347788888765542
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
...||+|++.. .....+ .+.....++.+.. .++|||++++..+
T Consensus 92 ----~~~yD~I~st~-----v~~fL~----~~~~~~i~~~m~~------------------~~~pGG~~li~~~ 134 (192)
T PF03848_consen 92 ----PEEYDFIVSTV-----VFMFLQ----RELRPQIIENMKA------------------ATKPGGYNLIVTF 134 (192)
T ss_dssp ----TTTEEEEEEES-----SGGGS-----GGGHHHHHHHHHH------------------TEEEEEEEEEEEE
T ss_pred ----cCCcCEEEEEE-----EeccCC----HHHHHHHHHHHHh------------------hcCCcEEEEEEEe
Confidence 35899998732 122222 2234566777776 8999999988654
No 61
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.28 E-value=9.2e-12 Score=104.52 Aligned_cols=104 Identities=28% Similarity=0.366 Sum_probs=70.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+++|.+|||+|||-|.++..+++++ +++|+||.+|++..+. .....++++...|..+++
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~-----g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-------- 125 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERY-----GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-------- 125 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----------
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHc-----CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--------
Confidence 47999999999999999999999997 5899999999988542 455567888888876542
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.+||.|++- ....+.. .+....++..+.+ +|||||.+++..+..
T Consensus 126 ---~~fD~IvSi--------~~~Ehvg-~~~~~~~f~~~~~------------------~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 126 ---GKFDRIVSI--------EMFEHVG-RKNYPAFFRKISR------------------LLKPGGRLVLQTITH 169 (273)
T ss_dssp ----S-SEEEEE--------SEGGGTC-GGGHHHHHHHHHH------------------HSETTEEEEEEEEEE
T ss_pred ---CCCCEEEEE--------echhhcC-hhHHHHHHHHHHH------------------hcCCCcEEEEEeccc
Confidence 389999982 1122211 1224577888888 999999999887654
No 62
>PRK05785 hypothetical protein; Provisional
Probab=99.28 E-value=1.6e-11 Score=100.31 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=64.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|++.+... ..++++|+.+++. ++++||+|
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-----~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~--------~d~sfD~v 114 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-----KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPF--------RDKSFDVV 114 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-----CCEEEEECCCHHHHHHHHhc--cceEEechhhCCC--------CCCCEEEE
Confidence 357899999999999999999875 36999999999998764332 2456777766543 36899999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcC
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALG 149 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (186)
++... .+.... ...++.++.+
T Consensus 115 ~~~~~-----l~~~~d------~~~~l~e~~R 135 (226)
T PRK05785 115 MSSFA-----LHASDN------IEKVIAEFTR 135 (226)
T ss_pred EecCh-----hhccCC------HHHHHHHHHH
Confidence 99542 232221 5678888888
No 63
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.27 E-value=1.4e-11 Score=100.74 Aligned_cols=105 Identities=24% Similarity=0.361 Sum_probs=76.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++.+.. ++.+|+|+|+++.|+..+ ....+++++++|+...+.
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~--p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------- 120 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQ--PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-------- 120 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCC--CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC--------
Confidence 357789999999999999999987532 268999999999997542 123468899998876542
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+|+|++... .+.... .....++.++.+ .|||||.+++...
T Consensus 121 --~~~d~v~~~~~-----l~~~~~----~~~~~~l~~i~~------------------~LkpgG~l~i~d~ 162 (239)
T TIGR00740 121 --KNASMVILNFT-----LQFLPP----EDRIALLTKIYE------------------GLNPNGVLVLSEK 162 (239)
T ss_pred --CCCCEEeeecc-----hhhCCH----HHHHHHHHHHHH------------------hcCCCeEEEEeec
Confidence 35899888542 222211 124567888888 9999999999853
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.27 E-value=1.9e-11 Score=105.62 Aligned_cols=102 Identities=21% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
..+|||+|||+|.++..++++.+ ..+|+++|+++.++..+. .....+++..|+.+. ..++|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p----~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~----------~~~~f 262 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP----KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD----------IKGRF 262 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc----------cCCCc
Confidence 45899999999999999999864 479999999999976521 112345556665432 14689
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
|+|++|++.+...... ....+.++..+.+ .|||||.|+|..
T Consensus 263 DlIvsNPPFH~g~~~~------~~~~~~~i~~a~~------------------~LkpgG~L~iVa 303 (342)
T PRK09489 263 DMIISNPPFHDGIQTS------LDAAQTLIRGAVR------------------HLNSGGELRIVA 303 (342)
T ss_pred cEEEECCCccCCcccc------HHHHHHHHHHHHH------------------hcCcCCEEEEEE
Confidence 9999998754322221 2346678888887 999999998754
No 65
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.27 E-value=5.3e-12 Score=101.33 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=75.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeee-cCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADV-INLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~-~~~~~~~l~~~~~~~ 111 (186)
++.+|||+|||+|.++..+++.++ +.+|+|+|+++.++..+ ....++.++++|+ ..++ .. .+.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p----~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~-~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP----DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DM-FPD 109 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC----CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HH-cCc
Confidence 578999999999999999998864 47999999999997542 1225788898887 4322 11 135
Q ss_pred CCccEEEeCCCCCCCC-CcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 112 KGFSVILSDMCPSVSG-ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
++||.|+++.+.+... .+... ......++..+.+ +|||||.|+|..
T Consensus 110 ~~~D~V~~~~~~p~~~~~~~~~----~~~~~~~l~~i~~------------------~LkpgG~l~i~~ 156 (202)
T PRK00121 110 GSLDRIYLNFPDPWPKKRHHKR----RLVQPEFLALYAR------------------KLKPGGEIHFAT 156 (202)
T ss_pred cccceEEEECCCCCCCcccccc----ccCCHHHHHHHHH------------------HcCCCCEEEEEc
Confidence 6899999976421111 01100 0113467777787 999999999875
No 66
>PRK08317 hypothetical protein; Provisional
Probab=99.27 E-value=3.4e-11 Score=96.80 Aligned_cols=104 Identities=33% Similarity=0.509 Sum_probs=77.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++.+|||+|||+|.++..+++.+++ .++|+|+|+++.++..+ ....++++..+|+...+. ..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~---~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--------~~ 85 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGP---EGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF--------PD 85 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC--------CC
Confidence 577889999999999999999998743 57999999999886442 223568888888765432 25
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|++... ..+..+ ....+..+.+ +|||||.+++...
T Consensus 86 ~~~D~v~~~~~----~~~~~~-------~~~~l~~~~~------------------~L~~gG~l~~~~~ 125 (241)
T PRK08317 86 GSFDAVRSDRV----LQHLED-------PARALAEIAR------------------VLRPGGRVVVLDT 125 (241)
T ss_pred CCceEEEEech----hhccCC-------HHHHHHHHHH------------------HhcCCcEEEEEec
Confidence 68999998542 112222 3456777777 9999999998764
No 67
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.27 E-value=2.3e-11 Score=95.43 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.+|||+|||+|.++..+++. +.+|+++|+++.++..+ ....+++++.+|+.+.. .+
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----------~~ 81 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGK------GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV----------RG 81 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc----------CC
Confidence 45679999999999999999986 34899999999997541 12235777778765432 34
Q ss_pred CccEEEeCCCCCCCCC-cccchH---------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGI-TTKDAA---------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|+++.+...... ...... ........++..+.+ +|||||.+++....
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPE------------------ILKEGGRVQLIQSS 142 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHH------------------hhCCCCEEEEEEec
Confidence 8999999876422111 000000 112335677777777 99999999887644
No 68
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.26 E-value=2.9e-11 Score=97.34 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=76.5
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-CCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..++++.+|||+|||+|.++..+++.++ +.+++|+|+|+.+++.++. ..++++.++|+.+ +. +.++
T Consensus 39 ~~~~~~~~VLDiGCG~G~~~~~L~~~~~----~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~--------~~~s 105 (204)
T TIGR03587 39 NRLPKIASILELGANIGMNLAALKRLLP----FKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PF--------KDNF 105 (204)
T ss_pred HhcCCCCcEEEEecCCCHHHHHHHHhCC----CCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CC--------CCCC
Confidence 3456788999999999999999998764 4799999999999876433 3567788888765 22 3579
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
||+|+++.. ..|. + .+....++.++.+ ++ ++.++|..+..+
T Consensus 106 fD~V~~~~v----L~hl-~----p~~~~~~l~el~r------------------~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 106 FDLVLTKGV----LIHI-N----PDNLPTAYRELYR------------------CS--NRYILIAEYYNP 146 (204)
T ss_pred EEEEEECCh----hhhC-C----HHHHHHHHHHHHh------------------hc--CcEEEEEEeeCC
Confidence 999998542 1121 1 1335677777777 55 567777766554
No 69
>PRK14967 putative methyltransferase; Provisional
Probab=99.26 E-value=2.5e-11 Score=98.59 Aligned_cols=120 Identities=25% Similarity=0.289 Sum_probs=77.9
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLP 100 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~ 100 (186)
.+.+.+.... ++++.+|||+|||+|.++..+++. + ..+|+++|+++.++..+ ....++.++.+|+....
T Consensus 24 ~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~----~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~ 97 (223)
T PRK14967 24 LLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-G----AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAV 97 (223)
T ss_pred HHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhc
Confidence 3444444433 577889999999999999998875 2 25999999999987541 11224677777765421
Q ss_pred hhhHhhhCCCCCCccEEEeCCCCCCCCCc-cc---------chHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccc
Q 038391 101 SNQVRALSPKQKGFSVILSDMCPSVSGIT-TK---------DAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLK 170 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk 170 (186)
+.++||+|++|++....... .. ...........++..+.+ +||
T Consensus 98 ---------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~------------------~Lk 150 (223)
T PRK14967 98 ---------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPA------------------LLA 150 (223)
T ss_pred ---------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHH------------------hcC
Confidence 34689999999753221110 00 001122334567777777 999
Q ss_pred cCcEEEEE
Q 038391 171 PGGHLVIK 178 (186)
Q Consensus 171 pgG~lvi~ 178 (186)
|||++++.
T Consensus 151 ~gG~l~~~ 158 (223)
T PRK14967 151 PGGSLLLV 158 (223)
T ss_pred CCcEEEEE
Confidence 99999874
No 70
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.25 E-value=1.9e-11 Score=102.11 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=73.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.+..+|||+|||+|.++..+++.++.. ++.+|+|+|+|+.++..+ ....++++..+|+.+++. ++++||+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~-~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~--------~~~sfD~ 154 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI-TTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPF--------ADQSLDA 154 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc-cCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCC--------cCCceeE
Confidence 345789999999999999999886531 124899999999998763 233568888998876653 3579999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|++... . ....+..+ +|||||.|++....
T Consensus 155 I~~~~~--------~----------~~~~e~~r------------------vLkpgG~li~~~p~ 183 (272)
T PRK11088 155 IIRIYA--------P----------CKAEELAR------------------VVKPGGIVITVTPG 183 (272)
T ss_pred EEEecC--------C----------CCHHHHHh------------------hccCCCEEEEEeCC
Confidence 998432 1 12345666 99999999987643
No 71
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.25 E-value=5.3e-11 Score=94.98 Aligned_cols=102 Identities=18% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+.++.+|||+|||+|.++..++...++ .++|+++|+++.+++.. ....++.++.+|+.+....
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~---~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~------ 107 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGE---TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT------ 107 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCC---CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh------
Confidence 4678999999999999999999987653 57999999999997531 2135688888877542111
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...+||.|+++.. ... ....+..+.+ +|||||++++..
T Consensus 108 -~~~~~D~V~~~~~-----~~~---------~~~~l~~~~~------------------~LkpgG~lv~~~ 145 (198)
T PRK00377 108 -INEKFDRIFIGGG-----SEK---------LKEIISASWE------------------IIKKGGRIVIDA 145 (198)
T ss_pred -cCCCCCEEEECCC-----ccc---------HHHHHHHHHH------------------HcCCCcEEEEEe
Confidence 1358999998431 111 3456777777 999999999754
No 72
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.25 E-value=9.8e-11 Score=94.54 Aligned_cols=106 Identities=28% Similarity=0.447 Sum_probs=77.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++.+|||+|||+|.++..++...+. ..+++++|+++.++... ....+++++.+|+.+...
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------- 117 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGK---TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------- 117 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------
Confidence 456789999999999999999998642 47999999999886441 123568888888876542
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|++... .+.... ....+..+.+ +|+|||.+++..+..
T Consensus 118 ~~~~~D~I~~~~~-----l~~~~~------~~~~l~~~~~------------------~L~~gG~li~~~~~~ 161 (239)
T PRK00216 118 PDNSFDAVTIAFG-----LRNVPD------IDKALREMYR------------------VLKPGGRLVILEFSK 161 (239)
T ss_pred CCCCccEEEEecc-----cccCCC------HHHHHHHHHH------------------hccCCcEEEEEEecC
Confidence 2468999998432 222221 4466777777 999999998876544
No 73
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=2.2e-11 Score=102.58 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=70.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++++|||+|||+|..+.++++. +.+|+|+|+|+.++... ....++++...|+.... ..++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~---------~~~~ 184 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS---------IQEE 184 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc---------ccCC
Confidence 3459999999999999999986 57999999999997641 11225677777665432 1468
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|++... .+..+ .+.....+..+.+ .|+|||++++..
T Consensus 185 fD~I~~~~v-----l~~l~----~~~~~~~l~~~~~------------------~LkpgG~~l~v~ 223 (287)
T PRK12335 185 YDFILSTVV-----LMFLN----RERIPAIIKNMQE------------------HTNPGGYNLIVC 223 (287)
T ss_pred ccEEEEcch-----hhhCC----HHHHHHHHHHHHH------------------hcCCCcEEEEEE
Confidence 999998542 12222 1235577788887 999999976643
No 74
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.24 E-value=9.5e-11 Score=93.67 Aligned_cols=106 Identities=25% Similarity=0.370 Sum_probs=77.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC----CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH----CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~----~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
..++.+|||+|||+|.++..+++..+. ..+++++|+++.++.... ...++++..+|+.+.+. +.+
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~---~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~ 105 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPD---RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPF--------EDN 105 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCC---CceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCC--------CCC
Confidence 346889999999999999999998642 269999999998865421 23468888888876542 246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+||+|++... .+.... ....++.+.+ .|+|||++++..+..
T Consensus 106 ~~D~i~~~~~-----~~~~~~------~~~~l~~~~~------------------~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 106 SFDAVTIAFG-----LRNVTD------IQKALREMYR------------------VLKPGGRLVILEFSK 146 (223)
T ss_pred cEEEEEEeee-----eCCccc------HHHHHHHHHH------------------HcCCCcEEEEEEecC
Confidence 8999988432 222221 4467788887 999999999876643
No 75
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.23 E-value=3.9e-11 Score=105.14 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=72.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC---CCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH---CDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~---~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.+. ....+++...|+... .++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-----g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-----------~~~ 228 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-----GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-----------NGQ 228 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-----------CCC
Confidence 6789999999999999999999875 479999999999976521 112356665654322 358
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
||.|++.... .... .......+..+.+ +|||||.+++..+.
T Consensus 229 fD~Ivs~~~~-----ehvg----~~~~~~~l~~i~r------------------~LkpGG~lvl~~i~ 269 (383)
T PRK11705 229 FDRIVSVGMF-----EHVG----PKNYRTYFEVVRR------------------CLKPDGLFLLHTIG 269 (383)
T ss_pred CCEEEEeCch-----hhCC----hHHHHHHHHHHHH------------------HcCCCcEEEEEEcc
Confidence 9999984321 1110 1123467777887 99999999998764
No 76
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.23 E-value=7.3e-11 Score=93.16 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+.++.+|||+|||+|.++..+++..+ +.+|+++|+++.++..+ ....+++++++|.... .
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~----~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----------~ 94 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFP----SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----------L 94 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----------c
Confidence 56788999999999999999998854 47999999999986541 1124678887775311 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
.++||+|+++.. ... ....+..+.+ .|+|||++++...
T Consensus 95 ~~~~D~v~~~~~-----~~~---------~~~~l~~~~~------------------~Lk~gG~lv~~~~ 132 (187)
T PRK08287 95 PGKADAIFIGGS-----GGN---------LTAIIDWSLA------------------HLHPGGRLVLTFI 132 (187)
T ss_pred CcCCCEEEECCC-----ccC---------HHHHHHHHHH------------------hcCCCeEEEEEEe
Confidence 357999998542 111 2345666776 9999999998764
No 77
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.22 E-value=4.2e-11 Score=105.49 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++++.+|||+|||+|.++..++...+ +.+|+|+|+|+.+++.+ ....+++++++|+.+.... ..
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p----~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~-------~~ 317 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERP----DAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP-------SE 317 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc-------cC
Confidence 45677999999999999999998754 47999999999997542 1234788999987543211 13
Q ss_pred CCccEEEeCCCCCCCCCccc-c-------------hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 112 KGFSVILSDMCPSVSGITTK-D-------------AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
++||+|++|+|.-....... . .....+..+..+..+.+ .|+|||.+++
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~------------------~LkpgG~lil 379 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPD------------------RLAEGGFLLL 379 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHH------------------hcCCCcEEEE
Confidence 57999999986422221110 0 01122334456666666 9999999987
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
.+
T Consensus 380 Ei 381 (423)
T PRK14966 380 EH 381 (423)
T ss_pred EE
Confidence 65
No 78
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.22 E-value=8.5e-11 Score=97.58 Aligned_cols=112 Identities=22% Similarity=0.270 Sum_probs=79.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..++.+|||+|||+|.++..++..++ ..+|+|+|+++.++..+ ....++.++.+|+.... .
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~----~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~ 172 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERP----DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------P 172 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------C
Confidence 35677999999999999999999874 47999999999986541 23357888888874421 2
Q ss_pred CCCccEEEeCCCCCCCCCcc-cc--------------hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEE
Q 038391 111 QKGFSVILSDMCPSVSGITT-KD--------------AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHL 175 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~l 175 (186)
.++||+|++|+++....... .. .....+.....+..+.+ +|+|||++
T Consensus 173 ~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~------------------~Lk~gG~l 234 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPR------------------YLKPGGWL 234 (275)
T ss_pred CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHH------------------hcccCCEE
Confidence 36899999987643221110 00 01133445667777777 99999999
Q ss_pred EEEE
Q 038391 176 VIKL 179 (186)
Q Consensus 176 vi~~ 179 (186)
++.+
T Consensus 235 ~~e~ 238 (275)
T PRK09328 235 LLEI 238 (275)
T ss_pred EEEE
Confidence 9865
No 79
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.22 E-value=8.7e-11 Score=98.89 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=78.1
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.+|||+|||+|.++..++...+ +.+|+|+|+++.++..+ ....+++++++|+.+.. +..+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---------~~~~ 182 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---------AGQK 182 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---------cCCC
Confidence 6999999999999999999864 47999999999997541 22235889999875421 2348
Q ss_pred ccEEEeCCCCCCCCC---------cccc-----hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGI---------TTKD-----AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|++|++.-.... +.+. ...........+..+.+ .|+|||.|++.+
T Consensus 183 fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~------------------~L~~gG~l~~e~ 244 (284)
T TIGR00536 183 IDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPD------------------YLKPNGFLVCEI 244 (284)
T ss_pred ccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHH------------------hccCCCEEEEEE
Confidence 999999976322211 0000 01123456677777777 999999999987
Q ss_pred ccC
Q 038391 180 LES 182 (186)
Q Consensus 180 ~~~ 182 (186)
-+.
T Consensus 245 g~~ 247 (284)
T TIGR00536 245 GNW 247 (284)
T ss_pred Ccc
Confidence 543
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.22 E-value=1e-11 Score=98.98 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=77.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
...+|||+|||+|.++..+++..+ ..+|+|+|+++.++..+ ....+++++++|+.++.. .+. +.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p----~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~----~~~-~~~ 86 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP----DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD----KFF-PDG 86 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH----hhC-CCC
Confidence 456999999999999999999864 48999999999987542 122479999998865321 111 346
Q ss_pred CccEEEeCCCCCC-CCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSV-SGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++|.|+.+.+.+. ...|.... -....++..+.+ +|||||.|++.+-.
T Consensus 87 ~~d~v~~~~pdpw~k~~h~~~r----~~~~~~l~~~~r------------------~LkpgG~l~~~td~ 134 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKKRHNKRR----ITQPHFLKEYAN------------------VLKKGGVIHFKTDN 134 (194)
T ss_pred ceeEEEEECCCcCCCCCccccc----cCCHHHHHHHHH------------------HhCCCCEEEEEeCC
Confidence 8999999864221 11111110 012467777777 99999999987643
No 81
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.21 E-value=5.8e-11 Score=96.62 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=74.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----C--------------CCCCeEEEEeeecC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----H--------------CDARVQTVSADVIN 98 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~--------------~~~~~~~~~~d~~~ 98 (186)
++++.+|||+|||.|..+..++++ |.+|+|||+|+..++.. . ...++++.++|+.+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC
Confidence 356789999999999999999997 68999999999876531 1 13468888999887
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+... ....||.|+.... .+.. ..+.....+..+.+ +|||||++++.
T Consensus 109 l~~~-------~~~~fd~v~D~~~-----~~~l----~~~~R~~~~~~l~~------------------lL~pgG~~~l~ 154 (218)
T PRK13255 109 LTAA-------DLADVDAVYDRAA-----LIAL----PEEMRERYVQQLAA------------------LLPAGCRGLLV 154 (218)
T ss_pred CCcc-------cCCCeeEEEehHh-----HhhC----CHHHHHHHHHHHHH------------------HcCCCCeEEEE
Confidence 7532 1247999986321 1111 13445677777777 99999975543
Q ss_pred E
Q 038391 179 L 179 (186)
Q Consensus 179 ~ 179 (186)
+
T Consensus 155 ~ 155 (218)
T PRK13255 155 T 155 (218)
T ss_pred E
Confidence 3
No 82
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.21 E-value=7.2e-11 Score=97.91 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=76.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC---CCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC---DARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~---~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
..+|||+|||+|.++..+++.++ +.+|+|+|+++.++..++. ..+.+++++|+.+..... ..++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~----~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~------~~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD----GIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTA------LRGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchh------cCCCEeE
Confidence 45899999999999999998864 4699999999999764211 112578888876432111 1357999
Q ss_pred EEeCCCCCCCCCcc-cch--------------HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 117 ILSDMCPSVSGITT-KDA--------------ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 117 V~~d~~~~~~~~~~-~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
|++|+++...+... ... ....+....++..+.+ +|||||++++.+-.
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~------------------~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPD------------------WLAPGGHLLVETSE 218 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHH------------------hcCCCCEEEEEECc
Confidence 99998754332211 110 0122334566666666 99999999987643
No 83
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=1.2e-10 Score=99.25 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=77.9
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.+|||+|||+|.++..++...+ +.+|+++|+++.++..+ ....+++++++|+.+.. +..+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p----~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l---------~~~~ 201 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP----DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL---------PGRR 201 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC---------CCCC
Confidence 6899999999999999999864 47999999999997541 22346889999875421 2358
Q ss_pred ccEEEeCCCCCCCCCc---------ccc-----hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGIT---------TKD-----AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|++|++.-..... .+. .....+.....+..+.+ .|+|||.+++.+
T Consensus 202 fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~------------------~L~pgG~l~~E~ 263 (307)
T PRK11805 202 YDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPD------------------YLTEDGVLVVEV 263 (307)
T ss_pred ccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHH------------------hcCCCCEEEEEE
Confidence 9999999763221110 000 01123455677777777 999999999976
Q ss_pred cc
Q 038391 180 LE 181 (186)
Q Consensus 180 ~~ 181 (186)
-+
T Consensus 264 g~ 265 (307)
T PRK11805 264 GN 265 (307)
T ss_pred Cc
Confidence 54
No 84
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.21 E-value=3.5e-11 Score=97.12 Aligned_cols=99 Identities=22% Similarity=0.247 Sum_probs=72.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++|||+|||+|.++..+++.++ +.+|+|+|+|+.++.. .....+++++..|+...+. .++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~----~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---------~~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP----HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---------PDT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---------CCC
Confidence 4799999999999999999864 4799999999988643 2234578888888754421 358
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
||+|++... ..+..+ ....+..+.+ +|||||.+++..+.
T Consensus 68 fD~I~~~~~----l~~~~~-------~~~~l~~~~~------------------~LkpgG~l~i~~~~ 106 (224)
T smart00828 68 YDLVFGFEV----IHHIKD-------KMDLFSNISR------------------HLKDGGHLVLADFI 106 (224)
T ss_pred CCEeehHHH----HHhCCC-------HHHHHHHHHH------------------HcCCCCEEEEEEcc
Confidence 999998321 111111 3467778887 99999999998753
No 85
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.20 E-value=1.9e-11 Score=101.00 Aligned_cols=96 Identities=25% Similarity=0.391 Sum_probs=69.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC--------CC----CeEEEEeeecCCChhhHhhh
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC--------DA----RVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~--------~~----~~~~~~~d~~~~~~~~l~~~ 107 (186)
|.+|||+|||.|.++..+++. +.+|+|||+++.|++.++. .. +++++..+....
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-------- 155 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-------- 155 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--------
Confidence 478999999999999999998 7899999999999765221 11 233443333222
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++||.|+|.. ..........++.-+.+ .|||+|.|+|+++.
T Consensus 156 ---~~~fDaVvcse-----------vleHV~dp~~~l~~l~~------------------~lkP~G~lfittin 197 (282)
T KOG1270|consen 156 ---TGKFDAVVCSE-----------VLEHVKDPQEFLNCLSA------------------LLKPNGRLFITTIN 197 (282)
T ss_pred ---ccccceeeeHH-----------HHHHHhCHHHHHHHHHH------------------HhCCCCceEeeehh
Confidence 34699999933 12223336677777777 99999999999865
No 86
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.20 E-value=8.4e-11 Score=96.89 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=86.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCC--CCCeEEEEeCCCCCCCC----c-----CCCCCeEEEEeeecCCChhhHh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLD--NGGSVVGIDVKKVKVPS----L-----HCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~--~~~~v~gvDis~~~i~~----~-----~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
..++.++||+|||||-++.-+.+..+..+ ...+|+..||+|.|+.. + ....++.++.+|+.++++
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF---- 173 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF---- 173 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC----
Confidence 35678999999999999999999876421 23799999999999754 1 223458899999988875
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
++.+||..... .|+.+.-+ ...++.+++| +|||||++.|-.|.-.
T Consensus 174 ----dd~s~D~yTia-----fGIRN~th------~~k~l~EAYR------------------VLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 174 ----DDDSFDAYTIA-----FGIRNVTH------IQKALREAYR------------------VLKPGGRFSCLEFSKV 218 (296)
T ss_pred ----CCCcceeEEEe-----cceecCCC------HHHHHHHHHH------------------hcCCCcEEEEEEcccc
Confidence 47899998773 45555554 7789999999 9999999998877643
No 87
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.19 E-value=4.5e-11 Score=103.14 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=75.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC---CCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC---DARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~---~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
+++.+|||+|||+|.++..+++.++ +.+|+++|+++.|+..+.. ..+++++.+|+.+.+. +.++|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~----~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~--------~~~sF 179 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD----AKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPF--------PTDYA 179 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCC--------CCCce
Confidence 5678999999999999999998864 4799999999999765321 2467788888765542 35689
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
|+|++... ..+..+ ....++++.+ +|||||++++..
T Consensus 180 DvVIs~~~----L~~~~d-------~~~~L~e~~r------------------vLkPGG~LvIi~ 215 (340)
T PLN02490 180 DRYVSAGS----IEYWPD-------PQRGIKEAYR------------------VLKIGGKACLIG 215 (340)
T ss_pred eEEEEcCh----hhhCCC-------HHHHHHHHHH------------------hcCCCcEEEEEE
Confidence 99998532 122222 3357888888 999999998753
No 88
>PRK06922 hypothetical protein; Provisional
Probab=99.18 E-value=7.2e-11 Score=108.62 Aligned_cols=114 Identities=21% Similarity=0.319 Sum_probs=77.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.+|||+|||+|..+..+++.++ +.+|+|+|+|+.|+..+. ...++.++++|+.+++.. .+.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P----~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~------fede 486 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETE----DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSS------FEKE 486 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccc------cCCC
Confidence 4678999999999999999998864 589999999999976521 224577788887664311 0357
Q ss_pred CccEEEeCCCCCCCCCccc--chHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTK--DAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+||+|+++...+....+.. ...........++..+.+ +|||||.++|..
T Consensus 487 SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~R------------------VLKPGGrLII~D 537 (677)
T PRK06922 487 SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYE------------------VLKPGGRIIIRD 537 (677)
T ss_pred CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHH------------------HcCCCcEEEEEe
Confidence 8999998643110000000 000012345677888887 999999999974
No 89
>PRK06202 hypothetical protein; Provisional
Probab=99.18 E-value=2.8e-10 Score=92.76 Aligned_cols=95 Identities=18% Similarity=0.108 Sum_probs=63.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC---CCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH---CDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~---~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
+++.+|||+|||+|.++..+++.....+++.+|+|+|+++.|+..+. ...++++...+...++. .+++|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~--------~~~~f 130 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVA--------EGERF 130 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccc--------cCCCc
Confidence 56779999999999999999876532212469999999999976532 22356666666544432 25689
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcC
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALG 149 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (186)
|+|+++.. .+.... .....++.++.+
T Consensus 131 D~V~~~~~-----lhh~~d----~~~~~~l~~~~r 156 (232)
T PRK06202 131 DVVTSNHF-----LHHLDD----AEVVRLLADSAA 156 (232)
T ss_pred cEEEECCe-----eecCCh----HHHHHHHHHHHH
Confidence 99999642 222221 123467777777
No 90
>PRK04457 spermidine synthase; Provisional
Probab=99.18 E-value=8.3e-11 Score=98.13 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=79.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++.+|||+|||.|.++..+++.++ +.+|+++|+++.+++.+ ....+++++.+|+.+.-.. .
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-------~ 133 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP----DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-------H 133 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC----CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-------C
Confidence 4568999999999999999999875 58999999999997541 1246788998987643211 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
..+||+|++|... +.....+ -....++..+.+ .|+|||+|++.++..+
T Consensus 134 ~~~yD~I~~D~~~---~~~~~~~----l~t~efl~~~~~------------------~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 134 RHSTDVILVDGFD---GEGIIDA----LCTQPFFDDCRN------------------ALSSDGIFVVNLWSRD 181 (262)
T ss_pred CCCCCEEEEeCCC---CCCCccc----cCcHHHHHHHHH------------------hcCCCcEEEEEcCCCc
Confidence 3589999998621 1111110 113578888887 9999999999987654
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.18 E-value=1.1e-10 Score=95.42 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=76.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+.+|||+|||+|.++..+++.++ ..+++|+|+++.++..+ ....+++++++|+.+.. +.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~ 153 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGG 153 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCC
Confidence 356999999999999999999864 47999999999997542 12236888888876421 246
Q ss_pred CccEEEeCCCCCCCCCc-ccch--------------HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 113 GFSVILSDMCPSVSGIT-TKDA--------------ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+||+|++|+++...... .... .........++..+.+ +|+|||.+++
T Consensus 154 ~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~------------------~L~~gG~~~~ 215 (251)
T TIGR03534 154 KFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR------------------LLKPGGWLLL 215 (251)
T ss_pred ceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH------------------hcccCCEEEE
Confidence 89999998764322211 0000 0112223466777777 9999999998
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
..
T Consensus 216 ~~ 217 (251)
T TIGR03534 216 EI 217 (251)
T ss_pred EE
Confidence 75
No 92
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.16 E-value=1.1e-10 Score=97.55 Aligned_cols=107 Identities=15% Similarity=0.234 Sum_probs=72.1
Q ss_pred CCCEEEEEcccCCh----HHHHHHHHhCC-CCCCCeEEEEeCCCCCCCCcCC----------------------------
Q 038391 39 PGSSVLDLGCAPGA----WLQVACQSLGP-LDNGGSVVGIDVKKVKVPSLHC---------------------------- 85 (186)
Q Consensus 39 ~~~~vLDlGcG~G~----~~~~l~~~~~~-~~~~~~v~gvDis~~~i~~~~~---------------------------- 85 (186)
++.+|||+|||+|. ++..+++.++. ..++.+|+|+|+|+.|++.+..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 45556665431 0124689999999999764221
Q ss_pred -----CCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCC
Q 038391 86 -----DARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS 160 (186)
Q Consensus 86 -----~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (186)
..+++|.+.|+.+.+. +.++||+|+|.. ..+..+ ......++....+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~--------~~~~fD~I~crn-----vl~yf~----~~~~~~~l~~l~~----------- 230 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP--------PLGDFDLIFCRN-----VLIYFD----EPTQRKLLNRFAE----------- 230 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC--------ccCCCCEEEech-----hHHhCC----HHHHHHHHHHHHH-----------
Confidence 1257888888876542 257899999942 122222 1235577777777
Q ss_pred CCCCCCcccccCcEEEEEEc
Q 038391 161 DSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 161 ~~~~~~~~LkpgG~lvi~~~ 180 (186)
.|+|||+|++..-
T Consensus 231 -------~L~pGG~L~lg~~ 243 (264)
T smart00138 231 -------ALKPGGYLFLGHS 243 (264)
T ss_pred -------HhCCCeEEEEECc
Confidence 9999999998643
No 93
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.15 E-value=2.3e-10 Score=96.59 Aligned_cols=99 Identities=24% Similarity=0.331 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.+++.+|||+|||+|.++..+++. + ..+|+|+|+++.++..+ ....++.+...+....
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~-g----~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------- 221 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL-G----AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------- 221 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc----------
Confidence 357899999999999999887764 2 36899999999987542 2223344444432111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..++||+|++|.. . ......+..+.+ .|||||+|+++.+..
T Consensus 222 ~~~~fDlVvan~~--------~------~~l~~ll~~~~~------------------~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 222 IEGKADVIVANIL--------A------EVIKELYPQFSR------------------LVKPGGWLILSGILE 262 (288)
T ss_pred cCCCceEEEEecC--------H------HHHHHHHHHHHH------------------HcCCCcEEEEEeCcH
Confidence 2468999999652 1 113456666776 999999999987643
No 94
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=2.6e-10 Score=96.18 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=75.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC------CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH------CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~------~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..+.+|||+|||.|.++..+++..+ ..+++.+|++...++.++ ...+..+...|..+.. .
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v----------~ 222 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV----------E 222 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhCC----CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc----------c
Confidence 3455999999999999999999975 489999999999976522 1122245555554332 3
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
++||+|+||+|.+...... ..+..+.+..+.+ .|++||.|.|..=
T Consensus 223 ~kfd~IisNPPfh~G~~v~------~~~~~~~i~~A~~------------------~L~~gGeL~iVan 267 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVV------HSLAQEIIAAAAR------------------HLKPGGELWIVAN 267 (300)
T ss_pred ccccEEEeCCCccCCcchh------HHHHHHHHHHHHH------------------hhccCCEEEEEEc
Confidence 4999999998865433222 2346677888887 9999999887653
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.13 E-value=2.9e-10 Score=91.42 Aligned_cols=74 Identities=20% Similarity=0.137 Sum_probs=54.7
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++++.+|||+|||+|.++..+++.. .+|+++|+++.++..+ ....++++..+|..+...
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~------ 140 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP------ 140 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC------
Confidence 3346788999999999999999888763 5899999999886541 122358888888654211
Q ss_pred CCCCCCccEEEeCC
Q 038391 108 SPKQKGFSVILSDM 121 (186)
Q Consensus 108 ~~~~~~~D~V~~d~ 121 (186)
..++||+|+++.
T Consensus 141 --~~~~fD~I~~~~ 152 (212)
T PRK00312 141 --AYAPFDRILVTA 152 (212)
T ss_pred --cCCCcCEEEEcc
Confidence 236899999965
No 96
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.12 E-value=6.8e-11 Score=94.31 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=69.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
-.++||+|||.|.+|..++.+. .+++++|+++..++.+ ....++++.+.|+.... +.++||
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~---------P~~~FD 108 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC------DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW---------PEGRFD 108 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT------------SS-EE
T ss_pred cceeEecCCCccHHHHHHHHhh------CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC---------CCCCee
Confidence 4689999999999999999984 6899999999998652 33468999999886543 468999
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|++.- .+++..+ .+....++..+.. .|+|||.||+-.+.
T Consensus 109 LIV~SE----VlYYL~~----~~~L~~~l~~l~~------------------~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 109 LIVLSE----VLYYLDD----AEDLRAALDRLVA------------------ALAPGGHLVFGHAR 148 (201)
T ss_dssp EEEEES-----GGGSSS----HHHHHHHHHHHHH------------------TEEEEEEEEEEEE-
T ss_pred EEEEeh----HhHcCCC----HHHHHHHHHHHHH------------------HhCCCCEEEEEEec
Confidence 999832 2222222 2335566677776 89999999998764
No 97
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.12 E-value=2e-10 Score=102.75 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=75.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.++..+ ....+++++++|+.....+ .+.++
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~------~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~------~~~~~ 103 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK------AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN------ISDGS 103 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC------CCCCC
Confidence 45679999999999999999987 36899999999998652 2235788999988643211 13578
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|+++.+ ..+..+ .....++..+.+ .|||||+++++.
T Consensus 104 fD~I~~~~~----l~~l~~-----~~~~~~l~~~~r------------------~Lk~gG~l~~~d 142 (475)
T PLN02336 104 VDLIFSNWL----LMYLSD-----KEVENLAERMVK------------------WLKVGGYIFFRE 142 (475)
T ss_pred EEEEehhhh----HHhCCH-----HHHHHHHHHHHH------------------hcCCCeEEEEEe
Confidence 999999542 112111 124577777887 999999999874
No 98
>PLN03075 nicotianamine synthase; Provisional
Probab=99.12 E-value=5.3e-10 Score=94.67 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=74.0
Q ss_pred CCCEEEEEcccCChHHHHHH-HHhCCCCCCCeEEEEeCCCCCCCC--------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 39 PGSSVLDLGCAPGAWLQVAC-QSLGPLDNGGSVVGIDVKKVKVPS--------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~-~~~~~~~~~~~v~gvDis~~~i~~--------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++|+|+|||+|.++..+. +...+ +++++|+|+++.++.. .....+++|.++|+.+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p---~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP---TTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC---CCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc--------
Confidence 67899999999987655444 33332 6899999999999654 1234679999999876431
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..+.||+|+++. .+..+. +.....++...+ .|+|||.|++..-+|
T Consensus 192 ~l~~FDlVF~~A------Li~~dk----~~k~~vL~~l~~------------------~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 192 SLKEYDVVFLAA------LVGMDK----EEKVKVIEHLGK------------------HMAPGALLMLRSAHG 236 (296)
T ss_pred ccCCcCEEEEec------cccccc----ccHHHHHHHHHH------------------hcCCCcEEEEecccc
Confidence 136899999952 222211 114567777777 999999999987554
No 99
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.11 E-value=2.2e-10 Score=103.66 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=75.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.+|||+|||+|.++..++..++ +.+|+|+|+|+.++..+ ....+++++++|+.+.. +.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p----~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~---------~~~ 205 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP----NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI---------EKQ 205 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC----CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC---------cCC
Confidence 46899999999999999998864 47999999999886541 22346888888864321 245
Q ss_pred CccEEEeCCCCCCCCCc------ccch---------HHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 113 GFSVILSDMCPSVSGIT------TKDA---------ALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+||+|++|++.-..... ..++ ....+.....+..+.+ +|+|||.+++
T Consensus 206 ~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~------------------~L~~gG~l~l 267 (506)
T PRK01544 206 KFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQ------------------FLKPNGKIIL 267 (506)
T ss_pred CccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHH------------------hccCCCEEEE
Confidence 89999999763221110 0001 1123344556666666 9999999998
Q ss_pred EE
Q 038391 178 KL 179 (186)
Q Consensus 178 ~~ 179 (186)
.+
T Consensus 268 Ei 269 (506)
T PRK01544 268 EI 269 (506)
T ss_pred EE
Confidence 65
No 100
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=4.4e-10 Score=96.43 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=56.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..+. .++|+++|+++.+++.+ ....++.++++|+.....
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~---~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-------- 145 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGE---KGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-------- 145 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCC---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------
Confidence 3678899999999999999999998753 36899999999986431 123468888888654322
Q ss_pred CCCCccEEEeC
Q 038391 110 KQKGFSVILSD 120 (186)
Q Consensus 110 ~~~~~D~V~~d 120 (186)
...+||+|+++
T Consensus 146 ~~~~fD~Ii~~ 156 (322)
T PRK13943 146 EFAPYDVIFVT 156 (322)
T ss_pred ccCCccEEEEC
Confidence 13579999984
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.09 E-value=5.6e-10 Score=88.82 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=72.4
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+|||+|||+|.++..+++..+ +++|+++|+++.++... ....+++++.+|+.+. +..+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~----~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~----~~~~-- 106 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCP----KGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC----LAQL-- 106 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH----HhhC--
Confidence 467889999999999999999987643 47999999999996541 1224688888877431 1111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
...+|.++.+.. .. ....+..+.+ .|+|||.+++....-
T Consensus 107 -~~~~d~v~~~~~--------~~-------~~~~l~~~~~------------------~LkpgG~li~~~~~~ 145 (196)
T PRK07402 107 -APAPDRVCIEGG--------RP-------IKEILQAVWQ------------------YLKPGGRLVATASSL 145 (196)
T ss_pred -CCCCCEEEEECC--------cC-------HHHHHHHHHH------------------hcCCCeEEEEEeecH
Confidence 234677766321 01 3467777777 999999999987653
No 102
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.09 E-value=7.2e-11 Score=100.06 Aligned_cols=114 Identities=24% Similarity=0.294 Sum_probs=83.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------------CCCCCeEEEEeeecCCChhhHh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------------HCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------------~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
+++..++|||||.|+.++-.-.. +-+.++|+||...-|..+ .....+.|+.+|++......+-
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA-----gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA-----GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL 190 (389)
T ss_pred ccccccceeccCCcccHhHhhhh-----cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc
Confidence 78899999999999988777654 246999999999887651 1223578999999876533222
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+ .++.+||+|-|-.++|+. ..+.+....++.++.+ +|||||+++-++-.++
T Consensus 191 e--~~dp~fDivScQF~~HYa-------Fetee~ar~~l~Nva~------------------~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 191 E--FKDPRFDIVSCQFAFHYA-------FETEESARIALRNVAK------------------CLKPGGVFIGTIPDSD 241 (389)
T ss_pred c--CCCCCcceeeeeeeEeee-------eccHHHHHHHHHHHHh------------------hcCCCcEEEEecCcHH
Confidence 1 224459999886554332 2345667788888888 9999999998876653
No 103
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.09 E-value=2.8e-10 Score=106.63 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=77.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++.+|||+|||+|.++..++.. + ..+|+++|+|+.+++. +... .+++++++|+.+.. ..+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-G----a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l----~~~-- 605 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-G----AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL----KEA-- 605 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-C----CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH----HHc--
Confidence 35889999999999999999985 2 3479999999999754 2222 47899999986432 111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+++||+|++|++.........+...........+..+.+ +|+|||.|++..
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~------------------lL~~gG~l~~~~ 656 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKR------------------LLRPGGTLYFSN 656 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHH------------------HcCCCCEEEEEe
Confidence 468999999976433221111112223334456666666 999999998754
No 104
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=9.4e-11 Score=99.15 Aligned_cols=102 Identities=27% Similarity=0.446 Sum_probs=67.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEE----eeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVS----ADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~----~d~~~~~~~~l~~~~~~~~ 112 (186)
.+++.+|||+|||+|.+++..++. |..+|+|+|+.|..+..++...+.+.+. .-..+.... . ..+
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kL-----GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~-----~-~~~ 228 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKL-----GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV-----P-ENG 228 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHc-----CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh-----c-ccC
Confidence 358999999999999999988886 2357999999999976532221111111 111111111 0 246
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++|. ... ..........+ .|||||+++++-+-
T Consensus 229 ~~DvIVANI------LA~--------vl~~La~~~~~------------------~lkpgg~lIlSGIl 265 (300)
T COG2264 229 PFDVIVANI------LAE--------VLVELAPDIKR------------------LLKPGGRLILSGIL 265 (300)
T ss_pred cccEEEehh------hHH--------HHHHHHHHHHH------------------HcCCCceEEEEeeh
Confidence 999999975 122 24466666666 99999999998653
No 105
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.08 E-value=5e-10 Score=95.08 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=70.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..+++.+.. +.+|+++|+|+.|+..+ ....++.++++|+.+... .....
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~-- 134 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEP-- 134 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhccc--
Confidence 567789999999999999999998742 47899999999997542 122356778999875321 00000
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
......+++++ ...+.... +....++..+.+ .|+|||.|+|.+
T Consensus 135 ~~~~~~~~~~g-----s~~~~~~~----~e~~~~L~~i~~------------------~L~pgG~~lig~ 177 (301)
T TIGR03438 135 AAGRRLGFFPG-----STIGNFTP----EEAVAFLRRIRQ------------------LLGPGGGLLIGV 177 (301)
T ss_pred ccCCeEEEEec-----ccccCCCH----HHHHHHHHHHHH------------------hcCCCCEEEEec
Confidence 00112233332 11222222 224567777777 999999999754
No 106
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.08 E-value=5e-10 Score=94.66 Aligned_cols=118 Identities=24% Similarity=0.293 Sum_probs=80.2
Q ss_pred hhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----c--CCCCCeEEE
Q 038391 20 VARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----L--HCDARVQTV 92 (186)
Q Consensus 20 ~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~--~~~~~~~~~ 92 (186)
..||.+|...+..++..+ .|++|||||||+|+++..++.+ +...|+|+|.++..... . .....+.++
T Consensus 97 EWrSd~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~-----GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l 170 (315)
T PF08003_consen 97 EWRSDWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGR-----GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL 170 (315)
T ss_pred cccccchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhc-----CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc
Confidence 456777777777776533 5889999999999999999987 23589999999876432 1 111112222
Q ss_pred EeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC
Q 038391 93 SADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG 172 (186)
Q Consensus 93 ~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg 172 (186)
.. .+++++. .+.||+|+|.+ ...|..+ ....+..... .|+||
T Consensus 171 pl--------gvE~Lp~-~~~FDtVF~MG----VLYHrr~-------Pl~~L~~Lk~------------------~L~~g 212 (315)
T PF08003_consen 171 PL--------GVEDLPN-LGAFDTVFSMG----VLYHRRS-------PLDHLKQLKD------------------SLRPG 212 (315)
T ss_pred Cc--------chhhccc-cCCcCEEEEee----ehhccCC-------HHHHHHHHHH------------------hhCCC
Confidence 11 2233332 46899999943 4566666 4456666666 89999
Q ss_pred cEEEEEEcc
Q 038391 173 GHLVIKLLE 181 (186)
Q Consensus 173 G~lvi~~~~ 181 (186)
|.||+.++-
T Consensus 213 GeLvLETlv 221 (315)
T PF08003_consen 213 GELVLETLV 221 (315)
T ss_pred CEEEEEEee
Confidence 999998874
No 107
>PRK14968 putative methyltransferase; Provisional
Probab=99.07 E-value=8.1e-10 Score=86.24 Aligned_cols=110 Identities=25% Similarity=0.319 Sum_probs=73.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.++... ... .++.+++.|+.+..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--------- 86 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF--------- 86 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc---------
Confidence 57889999999999999999987 47999999999886542 111 12777888765432
Q ss_pred CCCCccEEEeCCCCCCCCC-cc---------cchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGI-TT---------KDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...+||+|++|.+...... .. ............++..+.+ +|||||.+++.+
T Consensus 87 ~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------------------~Lk~gG~~~~~~ 148 (188)
T PRK14968 87 RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGR------------------YLKPGGRILLLQ 148 (188)
T ss_pred cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHH------------------hcCCCeEEEEEE
Confidence 2348999999865322110 00 0000112334566777777 999999988765
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
-
T Consensus 149 ~ 149 (188)
T PRK14968 149 S 149 (188)
T ss_pred c
Confidence 4
No 108
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.07 E-value=3.5e-10 Score=91.55 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=58.1
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCCh
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPS 101 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~ 101 (186)
..++.... +++|.+|||+|||+|+.+..++...+. .++|++||+.+.....+ ....++.++++|......
T Consensus 62 a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~---~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 62 ARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGP---VGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHST---TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCc---cceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 33444433 899999999999999999999999875 46899999999886541 123489999999765432
Q ss_pred hhHhhhCCCCCCccEEEeCC
Q 038391 102 NQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~ 121 (186)
. ...||.|++..
T Consensus 138 ~--------~apfD~I~v~~ 149 (209)
T PF01135_consen 138 E--------EAPFDRIIVTA 149 (209)
T ss_dssp G--------G-SEEEEEESS
T ss_pred c--------CCCcCEEEEee
Confidence 2 45899999954
No 109
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.07 E-value=3.3e-10 Score=99.10 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=78.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..+..+||||||+|.++..+++..+ ...++|+|+++.++.. .....++.++++|+..+.. .+ +.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P----~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~----~~--~~ 190 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP----NKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE----LL--PS 190 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC----CCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh----hC--CC
Confidence 4467999999999999999999975 4899999999988654 1223579999998764321 11 46
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+++|.|+++.+.+. ...... .-....++.++.+ +|+|||.+.+++
T Consensus 191 ~s~D~I~lnFPdPW----~KkrHR-Rlv~~~fL~e~~R------------------vLkpGG~l~l~T 235 (390)
T PRK14121 191 NSVEKIFVHFPVPW----DKKPHR-RVISEDFLNEALR------------------VLKPGGTLELRT 235 (390)
T ss_pred CceeEEEEeCCCCc----cccchh-hccHHHHHHHHHH------------------HcCCCcEEEEEE
Confidence 79999999764221 111100 0113577888888 999999999875
No 110
>PRK00811 spermidine synthase; Provisional
Probab=99.06 E-value=2.4e-10 Score=96.34 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=76.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----------CCCCCeEEEEeeecCCChhhHhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----------HCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----------~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
+..++||++|||.|..+..++++.+ ..+|++||+++.+++.+ ...++++++.+|+......
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~----~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---- 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS----VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---- 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC----CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh----
Confidence 4567999999999999999998632 36899999999986441 1356889999987653211
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|.+.+..... .-....++..+.+ .|+|||.+++..
T Consensus 147 ---~~~~yDvIi~D~~dp~~~~~-------~l~t~ef~~~~~~------------------~L~~gGvlv~~~ 191 (283)
T PRK00811 147 ---TENSFDVIIVDSTDPVGPAE-------GLFTKEFYENCKR------------------ALKEDGIFVAQS 191 (283)
T ss_pred ---CCCcccEEEECCCCCCCchh-------hhhHHHHHHHHHH------------------hcCCCcEEEEeC
Confidence 25689999998753321110 1123567777777 999999999863
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.06 E-value=9.9e-10 Score=86.90 Aligned_cols=101 Identities=22% Similarity=0.301 Sum_probs=76.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++.+++|+|||+|..+..++ ..++ .++||+||-+++++.. +....++..+.+++-+....
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a-~~~p---~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~------- 99 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWA-LAGP---SGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD------- 99 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHH-HhCC---CceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC-------
Confidence 36889999999999999999999 4444 6999999999998654 23467899999987543211
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
-.+||.|+.. |... ....++.+.. .|||||++|++...
T Consensus 100 -~~~~daiFIG------Gg~~---------i~~ile~~~~------------------~l~~ggrlV~nait 137 (187)
T COG2242 100 -LPSPDAIFIG------GGGN---------IEEILEAAWE------------------RLKPGGRLVANAIT 137 (187)
T ss_pred -CCCCCEEEEC------CCCC---------HHHHHHHHHH------------------HcCcCCeEEEEeec
Confidence 1279999983 3333 3467777777 89999999987643
No 112
>PHA03411 putative methyltransferase; Provisional
Probab=99.05 E-value=5.1e-10 Score=93.77 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+...+|||+|||+|.++..++.+.+ +.+|+|+|+++.++..++ ...+++++++|+.+.. ...+||+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~----~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~---------~~~kFDl 129 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK----PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE---------SNEKFDV 129 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc---------ccCCCcE
Confidence 4467999999999999999888753 369999999999976532 2346888888886543 2458999
Q ss_pred EEeCCCCC
Q 038391 117 ILSDMCPS 124 (186)
Q Consensus 117 V~~d~~~~ 124 (186)
|++|++..
T Consensus 130 IIsNPPF~ 137 (279)
T PHA03411 130 VISNPPFG 137 (279)
T ss_pred EEEcCCcc
Confidence 99998643
No 113
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.05 E-value=4.1e-10 Score=89.54 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=59.2
Q ss_pred HcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 33 QYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
...++++|.+|||+|||.|.+..++.+.- +.+.+|+|+++..+..... ..++++++|+... +..+ +++
T Consensus 7 I~~~I~pgsrVLDLGCGdG~LL~~L~~~k-----~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~g----L~~f--~d~ 74 (193)
T PF07021_consen 7 IAEWIEPGSRVLDLGCGDGELLAYLKDEK-----QVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEG----LADF--PDQ 74 (193)
T ss_pred HHHHcCCCCEEEecCCCchHHHHHHHHhc-----CCeEEEEecCHHHHHHHHH-cCCCEEECCHHHh----HhhC--CCC
Confidence 34468999999999999999999999863 5899999999998654221 2477899988653 2233 578
Q ss_pred CccEEEeC
Q 038391 113 GFSVILSD 120 (186)
Q Consensus 113 ~~D~V~~d 120 (186)
+||.||.+
T Consensus 75 sFD~VIls 82 (193)
T PF07021_consen 75 SFDYVILS 82 (193)
T ss_pred CccEEehH
Confidence 99999984
No 114
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.3e-09 Score=91.85 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=75.2
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
+|||+|||+|.++..++...+ ..+|+|+|+|+.++..+ .. .++.+++.|..+.. .++|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~----~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~----------~~~f 177 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP----DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL----------RGKF 177 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc----CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc----------CCce
Confidence 799999999999999999875 37999999999987542 22 45566666554321 3499
Q ss_pred cEEEeCCCCCCCCC-c-------------ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 115 SVILSDMCPSVSGI-T-------------TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 115 D~V~~d~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|+|++|+|.-.... . ........+.....+..+.. .|+|||.+++.+=
T Consensus 178 DlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~------------------~l~~~g~l~le~g 239 (280)
T COG2890 178 DLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPD------------------ILKPGGVLILEIG 239 (280)
T ss_pred eEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHH------------------HcCCCcEEEEEEC
Confidence 99999986322220 0 00111345566777777777 9999999998764
Q ss_pred c
Q 038391 181 E 181 (186)
Q Consensus 181 ~ 181 (186)
.
T Consensus 240 ~ 240 (280)
T COG2890 240 L 240 (280)
T ss_pred C
Confidence 3
No 115
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=99.03 E-value=6.5e-10 Score=91.09 Aligned_cols=76 Identities=26% Similarity=0.428 Sum_probs=59.8
Q ss_pred hhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeE-EEEeee
Q 038391 19 YVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQ-TVSADV 96 (186)
Q Consensus 19 y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~-~~~~d~ 96 (186)
|++|.+++|.+++..+....++.++||+|||||+++..+++. + ..+|+|+|+++.|+.. .....++. +...|+
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-g----a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni 129 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-G----AKEVYGVDVGYNQLAEKLRQDERVKVLERTNI 129 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-C----CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCc
Confidence 999999999999999886567889999999999999999997 2 3689999999987654 33444543 334455
Q ss_pred cCC
Q 038391 97 INL 99 (186)
Q Consensus 97 ~~~ 99 (186)
...
T Consensus 130 ~~~ 132 (228)
T TIGR00478 130 RYV 132 (228)
T ss_pred ccC
Confidence 543
No 116
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.02 E-value=1.2e-09 Score=90.28 Aligned_cols=97 Identities=26% Similarity=0.445 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCC---CCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCD---ARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~---~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
++++.+|||+|||+|.++..++.. + ..+|+|+|+++.++..+... .++. ..+ .+.. .+.+
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g----~~~v~giDis~~~l~~A~~n~~~~~~~---~~~-~~~~--------~~~~ 179 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G----AKKVLAVDIDPQAVEAARENAELNGVE---LNV-YLPQ--------GDLK 179 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C----CCeEEEEECCHHHHHHHHHHHHHcCCC---ceE-EEcc--------CCCC
Confidence 467899999999999988876664 2 24699999999997652211 1110 000 0000 1127
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
||+|+++.. . +.....+..+.+ +|||||++++..+..
T Consensus 180 fD~Vvani~------~--------~~~~~l~~~~~~------------------~LkpgG~lilsgi~~ 216 (250)
T PRK00517 180 ADVIVANIL------A--------NPLLELAPDLAR------------------LLKPGGRLILSGILE 216 (250)
T ss_pred cCEEEEcCc------H--------HHHHHHHHHHHH------------------hcCCCcEEEEEECcH
Confidence 999999642 1 113456666777 999999999986543
No 117
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.02 E-value=5.9e-10 Score=94.04 Aligned_cols=116 Identities=28% Similarity=0.375 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..++..|||+|||+|+.|.++++.+++ .+.|+++|+++.++.. .....++.....|........ .
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~---~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~------~ 153 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGN---KGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK------P 153 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTT---TSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH------H
T ss_pred ccccccccccccCCCCceeeeeecccc---hhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc------c
Confidence 578999999999999999999999975 6899999999988644 222345666666665442221 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHH-----------HHHHHHHHHHcCCcccCCCCCCCCCCCCCccc----ccCcEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSV-----------ELGMRAVDLALGPAALASPVNNSDSSTDSGVL----KPGGHL 175 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L----kpgG~l 175 (186)
...||.|++|.+|+..|....+..... ++....+..+.+ .+ ||||++
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~------------------~~~~~~k~gG~l 215 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAK------------------LLNIDFKPGGRL 215 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHH------------------CEHHHBEEEEEE
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHH------------------hhcccccCCCeE
Confidence 346999999999999887665543332 234455555555 99 999999
Q ss_pred EEEE
Q 038391 176 VIKL 179 (186)
Q Consensus 176 vi~~ 179 (186)
|-++
T Consensus 216 vYsT 219 (283)
T PF01189_consen 216 VYST 219 (283)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9664
No 118
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.01 E-value=1.4e-09 Score=88.40 Aligned_cols=103 Identities=21% Similarity=0.306 Sum_probs=70.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..++.+|||+|||+|.++..+++. +.+|+++|+++.++..+. ...++++...++...... ..
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 112 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE-------HP 112 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-------cC
Confidence 456889999999999999988876 478999999999865421 122456666655433211 24
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++||+|++... ..+..+ ....+..+.+ +|+|||.+++..+.
T Consensus 113 ~~fD~Ii~~~~----l~~~~~-------~~~~l~~~~~------------------~L~~gG~l~v~~~~ 153 (233)
T PRK05134 113 GQFDVVTCMEM----LEHVPD-------PASFVRACAK------------------LVKPGGLVFFSTLN 153 (233)
T ss_pred CCccEEEEhhH----hhccCC-------HHHHHHHHHH------------------HcCCCcEEEEEecC
Confidence 68999998431 111122 3356677777 99999999988654
No 119
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.01 E-value=1.1e-09 Score=89.92 Aligned_cols=102 Identities=19% Similarity=0.276 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+.++.+|||+|||+|+.+..++..++. +++|+++|+++.++.. .....+++++.+|+.+. +..+..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~---~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~----L~~l~~ 138 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPE---DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA----LDQLLN 138 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH----HHHHHh
Confidence 456789999999999999999988764 5899999999988543 33446789999988653 222211
Q ss_pred --CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 110 --KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 110 --~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
+.++||+|+.|... ......+..+.+ +|||||.+++
T Consensus 139 ~~~~~~fD~VfiDa~k--------------~~y~~~~~~~~~------------------ll~~GG~ii~ 176 (234)
T PLN02781 139 NDPKPEFDFAFVDADK--------------PNYVHFHEQLLK------------------LVKVGGIIAF 176 (234)
T ss_pred CCCCCCCCEEEECCCH--------------HHHHHHHHHHHH------------------hcCCCeEEEE
Confidence 14689999997531 113345666677 9999999887
No 120
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.01 E-value=1.5e-09 Score=95.50 Aligned_cols=112 Identities=22% Similarity=0.221 Sum_probs=73.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++++|||+|||+|+++..++.. +..+|+++|+++.++.. +... .+++++++|+.+.. ..+..
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-----ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l----~~~~~ 289 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-----GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL----RTYRD 289 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH----HHHHh
Confidence 46889999999999998876643 13599999999999754 2222 36889999986532 22211
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.+++||+|++|++.-..... ............+..+.+ +|+|||.|+.-
T Consensus 290 ~~~~fDlVilDPP~f~~~k~--~l~~~~~~y~~l~~~a~~------------------lLk~gG~lv~~ 338 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKS--QLMGACRGYKDINMLAIQ------------------LLNPGGILLTF 338 (396)
T ss_pred cCCCCCEEEECCCCCCCChH--HHHHHHHHHHHHHHHHHH------------------HcCCCeEEEEE
Confidence 24689999999864221111 111111223344555666 99999999864
No 121
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.01 E-value=1.1e-09 Score=89.54 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=93.1
Q ss_pred CCCCCChHHHHHHhhchhh--hhHH-hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 3 GVGAPDFFYREAQRLGYVA--RSAF-KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 3 ~~~~~~~~~~~~~~~~y~~--r~~~-~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
+....++|....+...+-. ...- .|.+...... ..++.+||+.|||.|.....|+++ |.+|+|+|+|+..
T Consensus 5 ~~~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~A 77 (226)
T PRK13256 5 ETNNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKA 77 (226)
T ss_pred ccCCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHH
Confidence 4455677877665543221 1111 2333333322 345789999999999999999998 6899999999988
Q ss_pred CCCc------------------CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHH
Q 038391 80 VPSL------------------HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGM 141 (186)
Q Consensus 80 i~~~------------------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~ 141 (186)
++.. ....++++.++|+.+++... ...++||.|+--.+ ..... .++..
T Consensus 78 i~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-----~~~~~fD~VyDra~-----~~Alp----p~~R~ 143 (226)
T PRK13256 78 VLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-----NNLPVFDIWYDRGA-----YIALP----NDLRT 143 (226)
T ss_pred HHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-----cccCCcCeeeeehh-----HhcCC----HHHHH
Confidence 7541 12347899999998875310 02358999876321 22222 24455
Q ss_pred HHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 142 RAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
..++.+.+ +|+|||.+++-+|+-+
T Consensus 144 ~Y~~~l~~------------------lL~pgg~llll~~~~~ 167 (226)
T PRK13256 144 NYAKMMLE------------------VCSNNTQILLLVMEHD 167 (226)
T ss_pred HHHHHHHH------------------HhCCCcEEEEEEEecC
Confidence 66666776 9999999999888643
No 122
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.01 E-value=2.3e-09 Score=90.91 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++++.+|||+|||+|.++..++++++ ..+++++|. +.+++. .....+++++.+|+.+...
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-------- 213 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFP----ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-------- 213 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCC----CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--------
Confidence 56778999999999999999999975 489999997 555433 2344679999999875431
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
..+|+|+... ..|.... +.....+..+.+ .|||||+++|..+
T Consensus 214 --~~~D~v~~~~-----~lh~~~~----~~~~~il~~~~~------------------~L~pgG~l~i~d~ 255 (306)
T TIGR02716 214 --PEADAVLFCR-----ILYSANE----QLSTIMCKKAFD------------------AMRSGGRLLILDM 255 (306)
T ss_pred --CCCCEEEeEh-----hhhcCCh----HHHHHHHHHHHH------------------hcCCCCEEEEEEe
Confidence 2369887622 2232221 234567777887 9999999998854
No 123
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.00 E-value=7.5e-10 Score=93.91 Aligned_cols=98 Identities=26% Similarity=0.472 Sum_probs=64.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.++|.+|||+|||+|.+++..++. + ..+|+|+|+++..+.. +....++... ...+.
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl-G----A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------- 221 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL-G----AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------- 221 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT-T----BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT----------
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc-C----CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc----------
Confidence 468899999999999998888886 3 3689999999998654 2333344331 11111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
...+||+|++|.- .. ..........+ .|+|||+|+++-+-.+
T Consensus 222 ~~~~~dlvvANI~------~~--------vL~~l~~~~~~------------------~l~~~G~lIlSGIl~~ 263 (295)
T PF06325_consen 222 VEGKFDLVVANIL------AD--------VLLELAPDIAS------------------LLKPGGYLILSGILEE 263 (295)
T ss_dssp CCS-EEEEEEES-------HH--------HHHHHHHHCHH------------------HEEEEEEEEEEEEEGG
T ss_pred ccccCCEEEECCC------HH--------HHHHHHHHHHH------------------hhCCCCEEEEccccHH
Confidence 2479999999752 11 13344444555 8999999999876543
No 124
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.98 E-value=2.3e-09 Score=86.52 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------CCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------CDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..++.+|||+|||+|.++..++.. +.+|+|+|+++.|+..++ ...++.+.++|+.+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------- 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------- 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------
Confidence 456889999999999999999886 469999999999975421 123678888877543
Q ss_pred CCCCccEEEe
Q 038391 110 KQKGFSVILS 119 (186)
Q Consensus 110 ~~~~~D~V~~ 119 (186)
.++||+|++
T Consensus 117 -~~~fD~ii~ 125 (219)
T TIGR02021 117 -CGEFDIVVC 125 (219)
T ss_pred -CCCcCEEEE
Confidence 258999988
No 125
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.98 E-value=6e-10 Score=87.91 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=72.5
Q ss_pred CCC-CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 37 IKP-GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 37 ~~~-~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
+.+ ..+|||||||+|.++..+++.-.. +..+|+|.|+..+..+ .....++|.+.|+.....
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~----~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~------- 132 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQ----SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDF------- 132 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCC----CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcc-------
Confidence 444 349999999999999999987332 5699999999986541 233349999999987642
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|+--+..+..+.+-..... ....-+....+ +|+|||+|+|.-
T Consensus 133 -~~~qfdlvlDKGT~DAisLs~d~~~~---r~~~Y~d~v~~------------------ll~~~gifvItS 181 (227)
T KOG1271|consen 133 -LSGQFDLVLDKGTLDAISLSPDGPVG---RLVVYLDSVEK------------------LLSPGGIFVITS 181 (227)
T ss_pred -cccceeEEeecCceeeeecCCCCccc---ceeeehhhHhh------------------ccCCCcEEEEEe
Confidence 25789999864432222222111100 01233444455 999999999974
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=98.98 E-value=8.5e-10 Score=90.63 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=67.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.+.+|||+|||+|.++..+++.+... +..+|+++|+++.++..++ ...++.++++|+.... ...+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~-~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~---------~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYA-KPREIVCVELNHTYYKLGKRIVPEATWINADALTTE---------FDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccC-CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhccc---------ccCCccEE
Confidence 36799999999999999999875310 1368999999999976532 2346788888876432 13589999
Q ss_pred EeCCCCCCCCCccc-chHHHHHHHHHHHHHHcC
Q 038391 118 LSDMCPSVSGITTK-DAALSVELGMRAVDLALG 149 (186)
Q Consensus 118 ~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 149 (186)
|+|+|......... ...........++..+.+
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~ 151 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQ 151 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHH
Confidence 99987543221111 111123445566776666
No 127
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.96 E-value=3.9e-09 Score=84.84 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=70.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+|||+|||+|.++..++.+. ..+|+++|+++..++.. ....+++++++|+.+... . ..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-----a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~----~---~~ 119 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-----AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA----Q---PG 119 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh----h---cC
Confidence 467899999999999998765552 36999999999885431 112468888888754211 1 23
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
.+||+|++|+|... +. .+.....+.. .. +|+|++.+++.+-..++
T Consensus 120 ~~fDlV~~DPPy~~-g~--------~~~~l~~l~~-~~------------------~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 120 TPHNVVFVDPPFRK-GL--------LEETINLLED-NG------------------WLADEALIYVESEVENG 164 (199)
T ss_pred CCceEEEECCCCCC-Ch--------HHHHHHHHHH-CC------------------CcCCCcEEEEEecCCCC
Confidence 57999999986321 11 1112222222 12 68999999998766544
No 128
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.96 E-value=2.6e-09 Score=93.34 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=83.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++|++|||+||.||+.|.++|..|.+ .+.|++.|.+...+.. .....+......|...++... .+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~-----~~ 310 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE-----FP 310 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcC---CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-----cC
Confidence 378999999999999999999999986 6899999999988654 122345555556665544222 12
Q ss_pred CCCccEEEeCCCCCCCCCcccchH-----------HHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAA-----------LSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+ +||-|+.|++|+.+|.-..+.. .-..+.+..+..+.. ++++||+||-++
T Consensus 311 ~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~------------------lv~~GGvLVYST 371 (460)
T KOG1122|consen 311 G-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAID------------------LVKAGGVLVYST 371 (460)
T ss_pred c-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHh------------------hccCCcEEEEEe
Confidence 3 8999999999998776443321 112244455555555 999999999665
Q ss_pred c
Q 038391 180 L 180 (186)
Q Consensus 180 ~ 180 (186)
=
T Consensus 372 C 372 (460)
T KOG1122|consen 372 C 372 (460)
T ss_pred e
Confidence 3
No 129
>PLN02672 methionine S-methyltransferase
Probab=98.96 E-value=1.9e-09 Score=104.37 Aligned_cols=113 Identities=19% Similarity=0.253 Sum_probs=77.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------C---------------CCCCeEEEEeeec
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------H---------------CDARVQTVSADVI 97 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~---------------~~~~~~~~~~d~~ 97 (186)
+.+|||+|||+|.++..+++.++ ..+|+|+|+|+.++..+ . ...+++++++|+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~----~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~ 194 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL----PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL 194 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh
Confidence 46899999999999999999875 37999999999996431 1 1246899999986
Q ss_pred CCChhhHhhhCCCCCCccEEEeCCCCCCCCC----------c-------------ccc----hHHHHHHHHHHHHHHcCC
Q 038391 98 NLPSNQVRALSPKQKGFSVILSDMCPSVSGI----------T-------------TKD----AALSVELGMRAVDLALGP 150 (186)
Q Consensus 98 ~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~----------~-------------~~~----~~~~~~~~~~~~~~~~~~ 150 (186)
+.... .+.+||+|++|++.=..+. + ..+ ........+..+..+.+
T Consensus 195 ~~~~~-------~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~- 266 (1082)
T PLN02672 195 GYCRD-------NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIS- 266 (1082)
T ss_pred hhccc-------cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHH-
Confidence 53211 1237999999976211110 0 000 13344555667777776
Q ss_pred cccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 151 AALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.|+|||.+++.+=.
T Consensus 267 -----------------~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 267 -----------------VIKPMGIMIFNMGG 280 (1082)
T ss_pred -----------------hccCCCEEEEEECc
Confidence 99999999988643
No 130
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.95 E-value=2.4e-09 Score=92.02 Aligned_cols=121 Identities=27% Similarity=0.291 Sum_probs=89.1
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC------CCCeEEEEe-eecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC------DARVQTVSA-DVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~------~~~~~~~~~-d~~~ 98 (186)
++.-..-....+++|+.|||--||||+++..+.-. |.+|+|.|++..|+..+.. .....++.. |+.+
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 34445555666899999999999999999998876 7899999999999876321 133445555 8887
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
++.+ ++++|.|++|++.-... ........++...+++.+.. +||+||++++-
T Consensus 258 lpl~--------~~~vdaIatDPPYGrst--~~~~~~l~~Ly~~~le~~~e------------------vLk~gG~~vf~ 309 (347)
T COG1041 258 LPLR--------DNSVDAIATDPPYGRST--KIKGEGLDELYEEALESASE------------------VLKPGGRIVFA 309 (347)
T ss_pred CCCC--------CCccceEEecCCCCccc--ccccccHHHHHHHHHHHHHH------------------HhhcCcEEEEe
Confidence 7633 45799999998732221 12222345778888888888 99999999987
Q ss_pred Ec
Q 038391 179 LL 180 (186)
Q Consensus 179 ~~ 180 (186)
..
T Consensus 310 ~p 311 (347)
T COG1041 310 AP 311 (347)
T ss_pred cC
Confidence 65
No 131
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.95 E-value=4.4e-09 Score=81.81 Aligned_cols=73 Identities=16% Similarity=0.329 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.++.+|||+|||+|.++..++++ +.+|+++|+++.++... ....+++++++|+.+.... +.
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~--------~~ 76 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLP--------KL 76 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcc--------cc
Confidence 467789999999999999999997 37999999999886541 1235788999998876432 34
Q ss_pred CccEEEeCCCC
Q 038391 113 GFSVILSDMCP 123 (186)
Q Consensus 113 ~~D~V~~d~~~ 123 (186)
+||.|++|.+.
T Consensus 77 ~~d~vi~n~Py 87 (169)
T smart00650 77 QPYKVVGNLPY 87 (169)
T ss_pred CCCEEEECCCc
Confidence 69999998763
No 132
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.95 E-value=6.4e-09 Score=89.43 Aligned_cols=90 Identities=27% Similarity=0.414 Sum_probs=70.0
Q ss_pred chhhhhHHhHHHHHHHcC-------CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeE
Q 038391 18 GYVARSAFKLLQIQKQYK-------LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQ 90 (186)
Q Consensus 18 ~y~~r~~~~l~~~~~~~~-------~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~ 90 (186)
+-.+|+.+||.+....+. .+.+|.++||+||+||+||..+.++ +.+|++||..+-. ..-....++.
T Consensus 183 ~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~-~~L~~~~~V~ 255 (357)
T PRK11760 183 DAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMA-QSLMDTGQVE 255 (357)
T ss_pred CCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcC-HhhhCCCCEE
Confidence 356899999999977765 3578999999999999999999998 6799999966532 2234557788
Q ss_pred EEEeeecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 91 TVSADVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 91 ~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
...+|...... ..+.+|+++|||.
T Consensus 256 h~~~d~fr~~p--------~~~~vDwvVcDmv 279 (357)
T PRK11760 256 HLRADGFKFRP--------PRKNVDWLVCDMV 279 (357)
T ss_pred EEeccCcccCC--------CCCCCCEEEEecc
Confidence 88887654432 1468999999984
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.3e-09 Score=86.35 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=59.5
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~ 103 (186)
...+...++++.+||++|||+|+.+..+++.. ++|+.+|+.+...+.+ ....++.++++|-+.-..
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-- 134 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLV------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP-- 134 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHh------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC--
Confidence 33444447999999999999999999999984 6999999999875442 123469999999765321
Q ss_pred HhhhCCCCCCccEEEeCC
Q 038391 104 VRALSPKQKGFSVILSDM 121 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~ 121 (186)
....||.|++..
T Consensus 135 ------~~aPyD~I~Vta 146 (209)
T COG2518 135 ------EEAPYDRIIVTA 146 (209)
T ss_pred ------CCCCcCEEEEee
Confidence 247999999854
No 134
>PRK01581 speE spermidine synthase; Validated
Probab=98.93 E-value=1.4e-09 Score=94.31 Aligned_cols=106 Identities=20% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------------CCCCeEEEEeeecCCChhhH
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------------CDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------------~~~~~~~~~~d~~~~~~~~l 104 (186)
....+||++|||.|..+..+.+..+ ..+|++||+++++++.+. ..++++++.+|+......
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~----v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-- 222 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYET----VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-- 222 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCC----CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh--
Confidence 4457999999999998888887632 369999999999865321 356899999988753221
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|++|.+-+... . ...-....++..+.+ .|+|||++++.
T Consensus 223 -----~~~~YDVIIvDl~DP~~~-~-----~~~LyT~EFy~~~~~------------------~LkPgGV~V~Q 267 (374)
T PRK01581 223 -----PSSLYDVIIIDFPDPATE-L-----LSTLYTSELFARIAT------------------FLTEDGAFVCQ 267 (374)
T ss_pred -----cCCCccEEEEcCCCcccc-c-----hhhhhHHHHHHHHHH------------------hcCCCcEEEEe
Confidence 246899999996421111 0 111224577888887 99999999886
No 135
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.5e-08 Score=82.94 Aligned_cols=95 Identities=26% Similarity=0.383 Sum_probs=76.8
Q ss_pred hchhhhhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeEEE-Ee
Q 038391 17 LGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQTV-SA 94 (186)
Q Consensus 17 ~~y~~r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~~~-~~ 94 (186)
..|++|.++||...+..|....++..+||+|+.||++|..+.++ +..+|+|+|.....+.. -+.++++..+ ..
T Consensus 57 ~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~-----gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~t 131 (245)
T COG1189 57 QPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQR-----GAKHVYAVDVGYGQLHWKLRNDPRVIVLERT 131 (245)
T ss_pred cCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHc-----CCcEEEEEEccCCccCHhHhcCCcEEEEecC
Confidence 45999999999999999998899999999999999999999998 34699999999988765 3445555554 56
Q ss_pred eecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 95 DVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 95 d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
|+..+....+ .+..|+++||.+
T Consensus 132 N~r~l~~~~~------~~~~d~~v~DvS 153 (245)
T COG1189 132 NVRYLTPEDF------TEKPDLIVIDVS 153 (245)
T ss_pred ChhhCCHHHc------ccCCCeEEEEee
Confidence 7777665443 347899999763
No 136
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.91 E-value=2.2e-10 Score=98.63 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=73.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------------CCCCCeEEEEeeecCCChh
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------------HCDARVQTVSADVINLPSN 102 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------------~~~~~~~~~~~d~~~~~~~ 102 (186)
++.+|||||||.|+.+.-.... + -..++|+||+...|..+ .......|+.+|+...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~----i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~--- 133 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-K----IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSE--- 133 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-----SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCS---
T ss_pred CCCeEEEecCCCchhHHHHHhc-C----CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccc---
Confidence 7889999999999988888775 1 36999999999886431 0113456667776643
Q ss_pred hHhhhCCC-CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 103 QVRALSPK-QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 103 ~l~~~~~~-~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.+.....+ ..+||+|-|-.+ .|- ...+.+..+.++.++.. .|+|||+++.++..
T Consensus 134 ~l~~~~~~~~~~FDvVScQFa-----lHY--~Fese~~ar~~l~Nvs~------------------~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 134 SLREKLPPRSRKFDVVSCQFA-----LHY--AFESEEKARQFLKNVSS------------------LLKPGGYFIGTTPD 188 (331)
T ss_dssp HHHCTSSSTTS-EEEEEEES------GGG--GGSSHHHHHHHHHHHHH------------------TEEEEEEEEEEEE-
T ss_pred hhhhhccccCCCcceeehHHH-----HHH--hcCCHHHHHHHHHHHHH------------------hcCCCCEEEEEecC
Confidence 23333222 369999998543 222 12345567778888888 99999999999987
Q ss_pred CCC
Q 038391 182 SQD 184 (186)
Q Consensus 182 ~~~ 184 (186)
++.
T Consensus 189 ~~~ 191 (331)
T PF03291_consen 189 SDE 191 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 137
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.90 E-value=6.2e-09 Score=83.79 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=70.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CC-CCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CD-ARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~-~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+.+|||+|||+|.++..+++. +.+++++|+++.++.... .. .++++...|+.+.... ..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~-------~~~ 111 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK-------GAK 111 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC-------CCC
Confidence 4779999999999999988875 467999999998865421 11 1467777766543221 136
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++... ..+..+ ....+..+.+ .|+|||.+++....
T Consensus 112 ~~D~i~~~~~----l~~~~~-------~~~~l~~~~~------------------~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 112 SFDVVTCMEV----LEHVPD-------PQAFIRACAQ------------------LLKPGGILFFSTIN 151 (224)
T ss_pred CccEEEehhH----HHhCCC-------HHHHHHHHHH------------------hcCCCcEEEEEecC
Confidence 8999998431 111111 3467777777 99999999987653
No 138
>PRK03612 spermidine synthase; Provisional
Probab=98.90 E-value=2.4e-09 Score=97.34 Aligned_cols=107 Identities=22% Similarity=0.198 Sum_probs=74.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-------------CCCCeEEEEeeecCCChhhH
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------------CDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------------~~~~~~~~~~d~~~~~~~~l 104 (186)
++.++|||+|||+|..+..++++ +. ..+|+++|+++++++.++ .+++++++.+|..+...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~---v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~--- 368 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PD---VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR--- 368 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CC---cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---
Confidence 55789999999999999999876 21 269999999999865421 23678888888764321
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
. ..++||+|++|.+.+.... . ..-...++++.+.+ .|||||.++++.
T Consensus 369 -~---~~~~fDvIi~D~~~~~~~~--~----~~L~t~ef~~~~~~------------------~L~pgG~lv~~~ 415 (521)
T PRK03612 369 -K---LAEKFDVIIVDLPDPSNPA--L----GKLYSVEFYRLLKR------------------RLAPDGLLVVQS 415 (521)
T ss_pred -h---CCCCCCEEEEeCCCCCCcc--h----hccchHHHHHHHHH------------------hcCCCeEEEEec
Confidence 1 2468999999864221100 0 01113467777777 999999999874
No 139
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.89 E-value=1.3e-09 Score=88.26 Aligned_cols=110 Identities=18% Similarity=0.263 Sum_probs=73.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-CCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-DARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
..-|||||||+|.-+..+.+. +-..+|+|||+.|++.+.. .-.-.++..|+-. +++...+.||.+|
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~-------GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVERELEGDLILCDMGE-------GLPFRPGTFDGVI 117 (270)
T ss_pred CcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHHhhhhcCeeeeecCC-------CCCCCCCccceEE
Confidence 678999999999999888875 6789999999999876432 1113455666642 1222468999987
Q ss_pred eCCC----CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 119 SDMC----PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 119 ~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+=.+ |+. +.........+..++...+. +|++|++.|++.+...+
T Consensus 118 SISAvQWLcnA----~~s~~~P~~Rl~~FF~tLy~------------------~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 118 SISAVQWLCNA----DKSLHVPKKRLLRFFGTLYS------------------CLKRGARAVLQFYPENE 165 (270)
T ss_pred Eeeeeeeeccc----CccccChHHHHHHHhhhhhh------------------hhccCceeEEEecccch
Confidence 6211 111 11111122335567777777 99999999999886543
No 140
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=1.1e-09 Score=89.68 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=85.9
Q ss_pred CChHHHHHHhhchhhhhHHhHHHHHHHcCCC-CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--c
Q 038391 7 PDFFYREAQRLGYVARSAFKLLQIQKQYKLI-KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--L 83 (186)
Q Consensus 7 ~~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~ 83 (186)
-|-||...+...+..|.+. +.+.-..+..- +...+||++|||.|.....+.+-.++ ++-+|+++|.|+.++.. .
T Consensus 39 wD~fy~~~~~rFfkdR~wL-~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n--~~l~v~acDfsp~Ai~~vk~ 115 (264)
T KOG2361|consen 39 WDTFYKIHENRFFKDRNWL-LREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPN--NRLKVYACDFSPRAIELVKK 115 (264)
T ss_pred hhhhhhhccccccchhHHH-HHhhHHhhCccccChhhheeeccCCCcccchhhhcCCC--CCeEEEEcCCChHHHHHHHh
Confidence 3445555554445555543 11111111111 22238999999999999999998664 35799999999999754 1
Q ss_pred C---CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCC
Q 038391 84 H---CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS 160 (186)
Q Consensus 84 ~---~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (186)
+ ...++.....|++... +..- ...+++|+|++ +....+ ...+....++.+..+
T Consensus 116 ~~~~~e~~~~afv~Dlt~~~---~~~~-~~~~svD~it~--------IFvLSA-i~pek~~~a~~nl~~----------- 171 (264)
T KOG2361|consen 116 SSGYDESRVEAFVWDLTSPS---LKEP-PEEGSVDIITL--------IFVLSA-IHPEKMQSVIKNLRT----------- 171 (264)
T ss_pred ccccchhhhcccceeccchh---ccCC-CCcCccceEEE--------EEEEec-cChHHHHHHHHHHHH-----------
Confidence 1 1123333334444332 1111 13579998866 222222 123346688888888
Q ss_pred CCCCCCcccccCcEEEEEEccCCC
Q 038391 161 DSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 161 ~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+|||||.|++.-+..=|
T Consensus 172 -------llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 172 -------LLKPGGSLLFRDYGRYD 188 (264)
T ss_pred -------HhCCCcEEEEeecccch
Confidence 99999999998765433
No 141
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.88 E-value=4.3e-09 Score=72.18 Aligned_cols=97 Identities=34% Similarity=0.483 Sum_probs=69.3
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
+|+|+|||+|..+..+++. . ..+++++|+++..+.. .....+++++..|+.+.... ...++|
T Consensus 1 ~ildig~G~G~~~~~~~~~-~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d 68 (107)
T cd02440 1 RVLDLGCGTGALALALASG-P----GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE-------ADESFD 68 (107)
T ss_pred CeEEEcCCccHHHHHHhcC-C----CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc-------cCCceE
Confidence 4899999999999999882 2 5799999999987542 22345678888887655321 246899
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+|+++...... .......+....+ .|+|||.+++.
T Consensus 69 ~i~~~~~~~~~----------~~~~~~~l~~~~~------------------~l~~~g~~~~~ 103 (107)
T cd02440 69 VIISDPPLHHL----------VEDLARFLEEARR------------------LLKPGGVLVLT 103 (107)
T ss_pred EEEEccceeeh----------hhHHHHHHHHHHH------------------HcCCCCEEEEE
Confidence 99997642211 2235566666666 89999999886
No 142
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.88 E-value=1.2e-09 Score=89.33 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=76.3
Q ss_pred HhHHHHHHHcCCCCCCC-EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhh
Q 038391 25 FKLLQIQKQYKLIKPGS-SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 25 ~~l~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~ 103 (186)
..+...+.. ..++. .++|+|||+|.-++.++.++ .+|+|+|+|+.||..+....++++.+.-.+ .+...
T Consensus 21 tdw~~~ia~---~~~~h~~a~DvG~G~Gqa~~~iae~~------k~VIatD~s~~mL~~a~k~~~~~y~~t~~~-ms~~~ 90 (261)
T KOG3010|consen 21 TDWFKKIAS---RTEGHRLAWDVGTGNGQAARGIAEHY------KEVIATDVSEAMLKVAKKHPPVTYCHTPST-MSSDE 90 (261)
T ss_pred HHHHHHHHh---hCCCcceEEEeccCCCcchHHHHHhh------hhheeecCCHHHHHHhhcCCCcccccCCcc-ccccc
Confidence 344443333 33443 89999999998888888886 579999999999876554444444432111 11112
Q ss_pred HhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 104 VRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...+....+++|+|+|- ...|+.+ .+++..++.+ +||+.|-++..-
T Consensus 91 ~v~L~g~e~SVDlI~~A-----qa~HWFd-------le~fy~~~~r------------------vLRk~Gg~iavW 136 (261)
T KOG3010|consen 91 MVDLLGGEESVDLITAA-----QAVHWFD-------LERFYKEAYR------------------VLRKDGGLIAVW 136 (261)
T ss_pred cccccCCCcceeeehhh-----hhHHhhc-------hHHHHHHHHH------------------HcCCCCCEEEEE
Confidence 22333347899999994 4466666 7789999998 999888444433
No 143
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.87 E-value=2.8e-09 Score=86.56 Aligned_cols=125 Identities=29% Similarity=0.371 Sum_probs=87.9
Q ss_pred hchhhhhHH--hHHHHHHHc---CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC----CCcCCCC
Q 038391 17 LGYVARSAF--KLLQIQKQY---KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV----PSLHCDA 87 (186)
Q Consensus 17 ~~y~~r~~~--~l~~~~~~~---~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i----~~~~~~~ 87 (186)
..||.+.++ ||...+... ..+++|.+||-||+++|...+++++..++ .+.||+||+|+... ..+....
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~---~G~VYaVEfs~r~~rdL~~la~~R~ 122 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGP---DGVVYAVEFSPRSMRDLLNLAKKRP 122 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHST
T ss_pred cceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCC---CCcEEEEEecchhHHHHHHHhccCC
Confidence 357666655 677655432 24689999999999999999999999986 69999999999663 3355567
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCc
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSG 167 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (186)
|+-.+-+|+..+... ..+ -+.+|+|++|.+ ..+ +.+.+..++..
T Consensus 123 NIiPIl~DAr~P~~Y--~~l---v~~VDvI~~DVa-------Qp~------Qa~I~~~Na~~------------------ 166 (229)
T PF01269_consen 123 NIIPILEDARHPEKY--RML---VEMVDVIFQDVA-------QPD------QARIAALNARH------------------ 166 (229)
T ss_dssp TEEEEES-TTSGGGG--TTT---S--EEEEEEE-S-------STT------HHHHHHHHHHH------------------
T ss_pred ceeeeeccCCChHHh--hcc---cccccEEEecCC-------ChH------HHHHHHHHHHh------------------
Confidence 888888999866432 222 358999999853 223 36778888877
Q ss_pred ccccCcEEEEEEc
Q 038391 168 VLKPGGHLVIKLL 180 (186)
Q Consensus 168 ~LkpgG~lvi~~~ 180 (186)
.||+||.++|.+-
T Consensus 167 fLk~gG~~~i~iK 179 (229)
T PF01269_consen 167 FLKPGGHLIISIK 179 (229)
T ss_dssp HEEEEEEEEEEEE
T ss_pred hccCCcEEEEEEe
Confidence 9999999998763
No 144
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.86 E-value=1.2e-08 Score=90.86 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLP 100 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~ 100 (186)
+.+.......+.++.+|||+|||+|.++..+++. ..+|+|+|+|+.++..+ ....+++++++|+.+..
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhh
Confidence 4443333333567889999999999999999987 37999999999997641 12246899999886432
Q ss_pred hhhHhhhCCCCCCccEEEeCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
. .+...+++||+|++|++
T Consensus 359 ~----~~~~~~~~fD~Vi~dPP 376 (443)
T PRK13168 359 T----DQPWALGGFDKVLLDPP 376 (443)
T ss_pred h----hhhhhcCCCCEEEECcC
Confidence 1 11112457999999876
No 145
>PLN02476 O-methyltransferase
Probab=98.86 E-value=1e-08 Score=86.33 Aligned_cols=103 Identities=14% Similarity=0.209 Sum_probs=76.4
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+.+.++|||+|+++|+.+..++..+++ +++|+++|.+++.... +....+++++.+|+.+. +..+..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~---~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~----L~~l~~ 188 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPE---SGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES----LKSMIQ 188 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHh
Confidence 356789999999999999999998875 5789999999987432 44556899999987653 222210
Q ss_pred --CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 --KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 --~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|+.|+. . ......++.+.+ +|+|||.+++-
T Consensus 189 ~~~~~~FD~VFIDa~--------K------~~Y~~y~e~~l~------------------lL~~GGvIV~D 227 (278)
T PLN02476 189 NGEGSSYDFAFVDAD--------K------RMYQDYFELLLQ------------------LVRVGGVIVMD 227 (278)
T ss_pred cccCCCCCEEEECCC--------H------HHHHHHHHHHHH------------------hcCCCcEEEEe
Confidence 1358999999863 1 124456666677 99999999873
No 146
>PLN02366 spermidine synthase
Probab=98.83 E-value=5.2e-09 Score=89.34 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=74.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||++|||.|.....++++.+ ..+|+.+|+++.+++.+ ..+++++++.+|+..... ..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~----v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~----~~ 161 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSS----VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK----NA 161 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh----hc
Confidence 5578999999999999999988731 36899999999875431 134689999998754321 11
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
++++||+|++|...+... . ..-....+++.+.+ .|+|||.++++
T Consensus 162 --~~~~yDvIi~D~~dp~~~---~----~~L~t~ef~~~~~~------------------~L~pgGvlv~q 205 (308)
T PLN02366 162 --PEGTYDAIIVDSSDPVGP---A----QELFEKPFFESVAR------------------ALRPGGVVCTQ 205 (308)
T ss_pred --cCCCCCEEEEcCCCCCCc---h----hhhhHHHHHHHHHH------------------hcCCCcEEEEC
Confidence 246899999987432211 0 01124567777887 99999999874
No 147
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.83 E-value=7.7e-09 Score=84.22 Aligned_cols=115 Identities=25% Similarity=0.402 Sum_probs=78.4
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------------------CCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------------------HCDA 87 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------------------~~~~ 87 (186)
.|.+..... ..+++.+||+.|||.|.....++++ |.+|+|+|+|+..++.. ....
T Consensus 25 ~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~ 97 (218)
T PF05724_consen 25 ALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG 97 (218)
T ss_dssp HHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred HHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence 355555552 2567789999999999999999998 67999999999886431 1134
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCc
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSG 167 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (186)
++++.++|+.+++.. ..++||+|+--. ....+.. ++.....+.+.+
T Consensus 98 ~i~~~~gDfF~l~~~-------~~g~fD~iyDr~-----~l~Alpp----~~R~~Ya~~l~~------------------ 143 (218)
T PF05724_consen 98 RITIYCGDFFELPPE-------DVGKFDLIYDRT-----FLCALPP----EMRERYAQQLAS------------------ 143 (218)
T ss_dssp SEEEEES-TTTGGGS-------CHHSEEEEEECS-----STTTS-G----GGHHHHHHHHHH------------------
T ss_pred ceEEEEcccccCChh-------hcCCceEEEEec-----ccccCCH----HHHHHHHHHHHH------------------
Confidence 688999999887643 125899998632 2333322 235566666776
Q ss_pred ccccCcEEEEEEcc
Q 038391 168 VLKPGGHLVIKLLE 181 (186)
Q Consensus 168 ~LkpgG~lvi~~~~ 181 (186)
+|+|||.+++.++.
T Consensus 144 ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 144 LLKPGGRGLLITLE 157 (218)
T ss_dssp CEEEEEEEEEEEEE
T ss_pred HhCCCCcEEEEEEE
Confidence 99999995444443
No 148
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.81 E-value=6e-09 Score=82.76 Aligned_cols=73 Identities=26% Similarity=0.385 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
++++.+|||+|||+|.++..+++.. +.+++|+|+++.++..+.. .+++++++|+...... + +.++||+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~-----~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~----~--~~~sfD~ 78 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEK-----QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEA----F--PDKSFDY 78 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcc-----CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccc----c--CCCCcCE
Confidence 4678899999999999999888763 4688999999998765322 2477888887542100 0 3578999
Q ss_pred EEeCC
Q 038391 117 ILSDM 121 (186)
Q Consensus 117 V~~d~ 121 (186)
|+++.
T Consensus 79 Vi~~~ 83 (194)
T TIGR02081 79 VILSQ 83 (194)
T ss_pred EEEhh
Confidence 99964
No 149
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.81 E-value=1.4e-08 Score=86.73 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=55.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+ ....+++++++|+...... ..+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~ 239 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGE 239 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCC
Confidence 4689999999999999999986 47999999999997542 1224689999988653211 135
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
+||+|++|++
T Consensus 240 ~~D~Vv~dPP 249 (315)
T PRK03522 240 VPDLVLVNPP 249 (315)
T ss_pred CCeEEEECCC
Confidence 7999999965
No 150
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.81 E-value=2e-08 Score=79.25 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=73.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCe---------EEEEeCCCCCCCC-------cCCCCCeE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGS---------VVGIDVKKVKVPS-------LHCDARVQ 90 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~---------v~gvDis~~~i~~-------~~~~~~~~ 90 (186)
+..........+++..|||-.||+|.+.+..+..... .. ++|.|+++.++.. +.....+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~----~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGAN----IPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT----TSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhC----cccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 4444445555688999999999999999998877543 33 8999999999754 33445688
Q ss_pred EEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcC
Q 038391 91 TVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALG 149 (186)
Q Consensus 91 ~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (186)
+.+.|+.+++. ..+++|.|++|++ -|..........++...++..+.+
T Consensus 92 ~~~~D~~~l~~--------~~~~~d~IvtnPP---yG~r~~~~~~~~~ly~~~~~~~~~ 139 (179)
T PF01170_consen 92 FIQWDARELPL--------PDGSVDAIVTNPP---YGRRLGSKKDLEKLYRQFLRELKR 139 (179)
T ss_dssp EEE--GGGGGG--------TTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHC
T ss_pred EEecchhhccc--------ccCCCCEEEECcc---hhhhccCHHHHHHHHHHHHHHHHH
Confidence 88999887752 2569999999986 344444444557777888999998
No 151
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.9e-08 Score=83.01 Aligned_cols=109 Identities=23% Similarity=0.292 Sum_probs=83.4
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
|-+.++.....+.+|.+|+|.|.|+|.++.+++..+++ .++|+.+|+-+...+. .....++++..+|+.+
T Consensus 81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~---~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGP---EGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCC---CceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 34445566666899999999999999999999998875 6999999999988543 2334458888888876
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
... ...||.|+.|++- .-.+++.+.. .|||||.+++=
T Consensus 158 ~~~---------~~~vDav~LDmp~----------------PW~~le~~~~------------------~Lkpgg~~~~y 194 (256)
T COG2519 158 GID---------EEDVDAVFLDLPD----------------PWNVLEHVSD------------------ALKPGGVVVVY 194 (256)
T ss_pred ccc---------ccccCEEEEcCCC----------------hHHHHHHHHH------------------HhCCCcEEEEE
Confidence 543 3489999999852 1246666676 99999999875
Q ss_pred Ec
Q 038391 179 LL 180 (186)
Q Consensus 179 ~~ 180 (186)
.-
T Consensus 195 ~P 196 (256)
T COG2519 195 SP 196 (256)
T ss_pred cC
Confidence 43
No 152
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.79 E-value=7.8e-09 Score=86.49 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=71.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------CCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------HCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+...+||++|||+|..+..+++..+ ..+|+++|+++.+++.+ ....+++++.+|.... +..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~----~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~----l~~- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS----VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF----LAD- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC----cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH----HHh-
Confidence 3456999999999999998887642 36899999999886431 1235677777665432 111
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|++|.+.+...... -....+++.+.+ .|+|||.+++.
T Consensus 142 --~~~~yDvIi~D~~~~~~~~~~-------l~~~ef~~~~~~------------------~L~pgG~lv~~ 185 (270)
T TIGR00417 142 --TENTFDVIIVDSTDPVGPAET-------LFTKEFYELLKK------------------ALNEDGIFVAQ 185 (270)
T ss_pred --CCCCccEEEEeCCCCCCcccc-------hhHHHHHHHHHH------------------HhCCCcEEEEc
Confidence 146899999986422211111 013466677777 99999999986
No 153
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.78 E-value=1.2e-08 Score=84.45 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=62.8
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
+-+.++.....++||.+||+-|+|+|.+|..+++.+++ .++|+.+|+.+...+. .....++++.+.|+..
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p---~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGP---TGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTT---TSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCC---CeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 44455566666899999999999999999999999876 6999999999988543 3455689999999865
Q ss_pred CChhhHhhhCCCCCCccEEEeCCC
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
..+. .+ ....+|.|+.|++
T Consensus 104 ~g~~--~~---~~~~~DavfLDlp 122 (247)
T PF08704_consen 104 EGFD--EE---LESDFDAVFLDLP 122 (247)
T ss_dssp G--S--TT----TTSEEEEEEESS
T ss_pred cccc--cc---ccCcccEEEEeCC
Confidence 3321 00 1368999999986
No 154
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.76 E-value=1.2e-08 Score=87.30 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=49.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC-----------CCCeEEEEeeecCCChhhHhhh
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC-----------DARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~-----------~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|+..++. ..++.+...|+..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-------- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-------- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--------
Confidence 5789999999999999999986 5799999999999754211 12456666664321
Q ss_pred CCCCCCccEEEeC
Q 038391 108 SPKQKGFSVILSD 120 (186)
Q Consensus 108 ~~~~~~~D~V~~d 120 (186)
.++||+|+|.
T Consensus 210 ---~~~fD~Vv~~ 219 (315)
T PLN02585 210 ---SGKYDTVTCL 219 (315)
T ss_pred ---CCCcCEEEEc
Confidence 3689999983
No 155
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.75 E-value=5.6e-09 Score=84.31 Aligned_cols=105 Identities=18% Similarity=0.323 Sum_probs=74.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
....++||++||++|+-+..+++.+++ +++|+.+|+++..... +....+++++.+|+.+.-.....+.
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-- 117 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPE---DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG-- 117 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTT---TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT--
T ss_pred hcCCceEEEeccccccHHHHHHHhhcc---cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc--
Confidence 345779999999999999999999875 6899999999987433 3445689999998865322111111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+|+.|.. ... ....++.+.+ +|+|||.+++-
T Consensus 118 ~~~~fD~VFiDa~--------K~~------y~~y~~~~~~------------------ll~~ggvii~D 154 (205)
T PF01596_consen 118 EEGQFDFVFIDAD--------KRN------YLEYFEKALP------------------LLRPGGVIIAD 154 (205)
T ss_dssp TTTSEEEEEEEST--------GGG------HHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred CCCceeEEEEccc--------ccc------hhhHHHHHhh------------------hccCCeEEEEc
Confidence 1358999999763 111 3345555666 99999999873
No 156
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.75 E-value=8.7e-08 Score=76.32 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=54.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
++.++||++||+|.++..++.+. ..+|++||+++..+.. .....+++++++|+... +..+....
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg-----a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~ 119 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG-----AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKP 119 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccC
Confidence 58899999999999999999982 3589999999988543 22234678888887432 11121112
Q ss_pred CCccEEEeCCCC
Q 038391 112 KGFSVILSDMCP 123 (186)
Q Consensus 112 ~~~D~V~~d~~~ 123 (186)
..||+|+.|++.
T Consensus 120 ~~~dvv~~DPPy 131 (189)
T TIGR00095 120 TFDNVIYLDPPF 131 (189)
T ss_pred CCceEEEECcCC
Confidence 358999998764
No 157
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.72 E-value=4.8e-08 Score=78.81 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=50.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.++..+ ....++++..+|+.. .
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----------~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-----------L 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-----------c
Confidence 56789999999999999999886 46799999999997542 112467888877321 2
Q ss_pred CCCccEEEeC
Q 038391 111 QKGFSVILSD 120 (186)
Q Consensus 111 ~~~~D~V~~d 120 (186)
.++||+|++.
T Consensus 125 ~~~fD~v~~~ 134 (230)
T PRK07580 125 LGRFDTVVCL 134 (230)
T ss_pred cCCcCEEEEc
Confidence 4689999984
No 158
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.70 E-value=1.9e-08 Score=80.50 Aligned_cols=107 Identities=23% Similarity=0.344 Sum_probs=73.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
.+||||||.|.++..+|+..+ ...++|+|+....+.. .....|+.++++|+... +..+. +.+++|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P----d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~----l~~~~-~~~~v~ 90 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP----DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL----LRRLF-PPGSVD 90 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST----TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH----HHHHS-TTTSEE
T ss_pred eEEEecCCCCHHHHHHHHHCC----CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH----Hhhcc-cCCchh
Confidence 899999999999999999975 5899999999988654 23457899999998653 33333 357999
Q ss_pred EEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 116 VILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 116 ~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.|..+.+ |....-|...+.. ...++....+ .|+|||.+.+++
T Consensus 91 ~i~i~FPDPWpK~rH~krRl~----~~~fl~~~~~------------------~L~~gG~l~~~T 133 (195)
T PF02390_consen 91 RIYINFPDPWPKKRHHKRRLV----NPEFLELLAR------------------VLKPGGELYFAT 133 (195)
T ss_dssp EEEEES-----SGGGGGGSTT----SHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred eEEEeCCCCCcccchhhhhcC----CchHHHHHHH------------------HcCCCCEEEEEe
Confidence 9988765 2222222222111 3366667776 999999998875
No 159
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.70 E-value=5.5e-08 Score=85.04 Aligned_cols=72 Identities=13% Similarity=0.194 Sum_probs=54.4
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.+ ....+++++++|+.+.... ..
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~ 298 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QM 298 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cC
Confidence 35679999999999999999975 47899999999997541 1223788998887543211 12
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
.+||+|++|++
T Consensus 299 ~~~D~vi~DPP 309 (374)
T TIGR02085 299 SAPELVLVNPP 309 (374)
T ss_pred CCCCEEEECCC
Confidence 46999999976
No 160
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.70 E-value=5.4e-08 Score=80.91 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=58.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.++.+|||+|||+|.+|..+++. +.+|+++|+++.++... ....+++++++|+..... .
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~----------~ 90 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL----------P 90 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc----------h
Confidence 567899999999999999999998 36899999999996541 113579999999876542 2
Q ss_pred CccEEEeCCCCCC
Q 038391 113 GFSVILSDMCPSV 125 (186)
Q Consensus 113 ~~D~V~~d~~~~~ 125 (186)
.||.|++|.+...
T Consensus 91 ~~d~Vv~NlPy~i 103 (258)
T PRK14896 91 EFNKVVSNLPYQI 103 (258)
T ss_pred hceEEEEcCCccc
Confidence 5799999987443
No 161
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=6.5e-08 Score=77.50 Aligned_cols=114 Identities=25% Similarity=0.271 Sum_probs=85.3
Q ss_pred hHHHHHHHcC---CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYK---LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~---~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~ 98 (186)
||...+.... .+++|++||-||+.+|...+++++..++ +.+||||+|+..... +....|+--+.+|+..
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~----G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~ 135 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGE----GRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARK 135 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCC----CcEEEEEecchhHHHHHHHHHhCCCceeeecccCC
Confidence 5665444322 3689999999999999999999999863 899999999988533 4556678888899886
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+.. ...+ -+.+|+|+.|.+ .++ +.+.+..++.. +||+||.++|.
T Consensus 136 P~~--Y~~~---Ve~VDviy~DVA-------Qp~------Qa~I~~~Na~~------------------FLk~~G~~~i~ 179 (231)
T COG1889 136 PEK--YRHL---VEKVDVIYQDVA-------QPN------QAEILADNAEF------------------FLKKGGYVVIA 179 (231)
T ss_pred cHH--hhhh---cccccEEEEecC-------Cch------HHHHHHHHHHH------------------hcccCCeEEEE
Confidence 643 2333 357999999753 232 36778888888 99999965554
Q ss_pred E
Q 038391 179 L 179 (186)
Q Consensus 179 ~ 179 (186)
+
T Consensus 180 i 180 (231)
T COG1889 180 I 180 (231)
T ss_pred E
Confidence 3
No 162
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=4.3e-08 Score=78.90 Aligned_cols=105 Identities=24% Similarity=0.394 Sum_probs=68.9
Q ss_pred CCC-CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeE-EEEeeecCCChhhHhhhCC
Q 038391 38 KPG-SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQ-TVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~-~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~-~~~~d~~~~~~~~l~~~~~ 109 (186)
+.+ ..||++|||||..-.+.-.. ++.+|+++|.++.|-+. .+...++. |+.++..+++. +
T Consensus 74 k~~K~~vLEvgcGtG~Nfkfy~~~-----p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~--l----- 141 (252)
T KOG4300|consen 74 KSGKGDVLEVGCGTGANFKFYPWK-----PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ--L----- 141 (252)
T ss_pred ccCccceEEecccCCCCcccccCC-----CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc--c-----
Confidence 444 36899999999765554433 36899999999999332 11223444 77887776641 1
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE-EEEccCC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV-IKLLESQ 183 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv-i~~~~~~ 183 (186)
++.++|.|++-.. .-. .+-....+.+..+ +|||||+++ |.+..++
T Consensus 142 ~d~s~DtVV~Tlv-----LCS------ve~~~k~L~e~~r------------------lLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 142 ADGSYDTVVCTLV-----LCS------VEDPVKQLNEVRR------------------LLRPGGRIIFIEHVAGE 187 (252)
T ss_pred ccCCeeeEEEEEE-----Eec------cCCHHHHHHHHHH------------------hcCCCcEEEEEeccccc
Confidence 4789999988321 111 1225678888888 999999977 4444443
No 163
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=9.7e-08 Score=79.71 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=58.1
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS 101 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~ 101 (186)
+..+.....+ +..|||+|||+|.+++.++..+++ ++|+++|.|+.++.. .....++..++-++.+...
T Consensus 139 d~~~~~~~~~-~~~ildlgtGSGaIslsll~~L~~----~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~ 213 (328)
T KOG2904|consen 139 DALNNSEHSK-HTHILDLGTGSGAISLSLLHGLPQ----CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS 213 (328)
T ss_pred HHHhhhhhcc-cceEEEecCCccHHHHHHHhcCCC----ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc
Confidence 3334433333 448999999999999999999874 899999999999654 2344566666443333211
Q ss_pred hhHhhhCCCCCCccEEEeCCC
Q 038391 102 NQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~~ 122 (186)
. +...+.+++|++++|++
T Consensus 214 ~---~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 214 D---EHPLLEGKIDLLVSNPP 231 (328)
T ss_pred c---ccccccCceeEEecCCC
Confidence 1 01113579999999975
No 164
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.69 E-value=8.2e-08 Score=85.20 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=61.4
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLP 100 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~ 100 (186)
+.+....+..++++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+ ....+++++++|+.+..
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 3443333333567789999999999999999987 36899999999997542 12357899999886421
Q ss_pred hhhHhhhCCCCCCccEEEeCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
..+...+.+||+|+.|++
T Consensus 354 ----~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 354 ----PKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred ----HHHHhcCCCCCEEEECcC
Confidence 122112457999999876
No 165
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.68 E-value=7.2e-08 Score=84.65 Aligned_cols=110 Identities=25% Similarity=0.276 Sum_probs=77.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC-------cCC-CCCeEEEEeeecCCChhhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS-------LHC-DARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~-------~~~-~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
|++|||+.|=||+++.+.+.. |+ +|++||+|...+.. +.. ..+..++++|+... +...-..
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~ 287 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERR 287 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhc
Confidence 999999999999999999986 45 99999999998754 222 34678999998654 2223224
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+.+||+|+.|+|.-..+-... ....+-....+..+.+ +|+|||++++..
T Consensus 288 g~~fDlIilDPPsF~r~k~~~--~~~~rdy~~l~~~~~~------------------iL~pgG~l~~~s 336 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQE--FSAQRDYKDLNDLALR------------------LLAPGGTLVTSS 336 (393)
T ss_pred CCcccEEEECCcccccCcccc--hhHHHHHHHHHHHHHH------------------HcCCCCEEEEEe
Confidence 569999999986222221111 2233344466666666 999999998764
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.66 E-value=6.3e-08 Score=81.14 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=57.8
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+.++.+|||+|||+|.++..++++ +.+|+|+|+++.|++.. ....+++++++|+...+... -
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~------~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~--------~ 104 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLER------AAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE--------L 104 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHh------CCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH--------c
Confidence 3577889999999999999999998 35899999999997652 11258999999988765331 1
Q ss_pred CccEEEeCCCC
Q 038391 113 GFSVILSDMCP 123 (186)
Q Consensus 113 ~~D~V~~d~~~ 123 (186)
.++.|++|.+.
T Consensus 105 ~~~~vv~NlPY 115 (272)
T PRK00274 105 QPLKVVANLPY 115 (272)
T ss_pred CcceEEEeCCc
Confidence 15899998763
No 167
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.65 E-value=4.4e-09 Score=85.74 Aligned_cols=115 Identities=20% Similarity=0.236 Sum_probs=73.2
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCC-CCeEEEEeeecCCChhhH
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCD-ARVQTVSADVINLPSNQV 104 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~-~~~~~~~~d~~~~~~~~l 104 (186)
.|.+++..... .+-.++||+|||||..+..+-... .+++|||||+.|++++... ..-+..+++...+.
T Consensus 113 ~l~emI~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl---- 181 (287)
T COG4976 113 LLAEMIGKADL-GPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFL---- 181 (287)
T ss_pred HHHHHHHhccC-CccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhccchHHHHHHHHHHHh----
Confidence 45555555331 224799999999999999998874 6899999999999875432 22233344433221
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.. .++.||+|.+-- - ..=+--.+..+..+.. .|+|||.|.++.=..
T Consensus 182 ~~~--~~er~DLi~AaD-----V------l~YlG~Le~~~~~aa~------------------~L~~gGlfaFSvE~l 228 (287)
T COG4976 182 EDL--TQERFDLIVAAD-----V------LPYLGALEGLFAGAAG------------------LLAPGGLFAFSVETL 228 (287)
T ss_pred hhc--cCCcccchhhhh-----H------HHhhcchhhHHHHHHH------------------hcCCCceEEEEeccc
Confidence 111 367999997621 0 0001114466666676 999999999876443
No 168
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=3.4e-08 Score=81.10 Aligned_cols=40 Identities=25% Similarity=0.590 Sum_probs=35.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+..+||+||-+|..|..+++.+++ ..|+|+||.+..|..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~ 97 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQR 97 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHH
Confidence 3678999999999999999999975 689999999987543
No 169
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.63 E-value=8.5e-08 Score=78.49 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=75.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcC--------CCCCeEEEEeeecCCChhhHhhhC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLH--------CDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~--------~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
+.|++|||-|.|-|+.++..+++ |+ +|+.||.++.-+..+. ....+.++.+|+.++- +.+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V----~~~- 201 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV----KDF- 201 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH----hcC-
Confidence 56999999999999999999998 45 9999999998865522 1235788889876542 222
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
.+.+||.|+-|++.-.... .--.+++..+..+ +|||||.|+
T Consensus 202 -~D~sfDaIiHDPPRfS~Ag--------eLYseefY~El~R------------------iLkrgGrlF 242 (287)
T COG2521 202 -DDESFDAIIHDPPRFSLAG--------ELYSEEFYRELYR------------------ILKRGGRLF 242 (287)
T ss_pred -CccccceEeeCCCccchhh--------hHhHHHHHHHHHH------------------HcCcCCcEE
Confidence 4789999999875211111 1125678888888 999999987
No 170
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.62 E-value=9.2e-08 Score=82.06 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=69.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC------CCCcCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK------VPSLHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~------i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+=+++.|||+|||+|.++.+.++. |..+|++||.|.-+ +..+.....++++++.+.+... |
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA-----GA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~L--------P 124 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA-----GARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIEL--------P 124 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh-----CcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEec--------C
Confidence 446889999999999888888887 24699999999865 2234555668888887765522 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
-.++|+|++.. .|.+.. -..++...+..--+ .|+|||.++
T Consensus 125 ~eKVDiIvSEW----MGy~Ll----~EsMldsVl~ARdk------------------wL~~~G~i~ 164 (346)
T KOG1499|consen 125 VEKVDIIVSEW----MGYFLL----YESMLDSVLYARDK------------------WLKEGGLIY 164 (346)
T ss_pred ccceeEEeehh----hhHHHH----Hhhhhhhhhhhhhh------------------ccCCCceEc
Confidence 47999999942 222222 22334444444444 999999875
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.61 E-value=9e-08 Score=81.27 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=59.5
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
.+.++.+|||+|||+|.+|..+++. +.+|+++|+++.++... ....+++++++|+....
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-------- 98 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-------- 98 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc--------
Confidence 3678899999999999999999987 46899999999996541 12467999999987643
Q ss_pred CCCCCccEEEeCCCCCCC
Q 038391 109 PKQKGFSVILSDMCPSVS 126 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~ 126 (186)
-..||+|++|.+..++
T Consensus 99 --~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 --FPYFDVCVANVPYQIS 114 (294)
T ss_pred --ccccCEEEecCCcccC
Confidence 1368999999875443
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.60 E-value=1e-07 Score=77.58 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEE-eeecCCChhhHhhhC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVS-ADVINLPSNQVRALS 108 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~-~d~~~~~~~~l~~~~ 108 (186)
++..++||++|++.|+-+..++..++. .++++.+|+++++... +....++..+. +|..+. +..+
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~----l~~~- 128 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV----LSRL- 128 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH----HHhc-
Confidence 457889999999999999999999874 4799999999999543 44556677777 465432 2221
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
..++||+|+.|.. + ......++.+.. +|+|||.+|+
T Consensus 129 -~~~~fDliFIDad--------K------~~yp~~le~~~~------------------lLr~GGliv~ 164 (219)
T COG4122 129 -LDGSFDLVFIDAD--------K------ADYPEYLERALP------------------LLRPGGLIVA 164 (219)
T ss_pred -cCCCccEEEEeCC--------h------hhCHHHHHHHHH------------------HhCCCcEEEE
Confidence 3579999999763 1 113467777887 9999999986
No 173
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.60 E-value=1.2e-07 Score=78.54 Aligned_cols=101 Identities=13% Similarity=0.219 Sum_probs=74.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC-
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP- 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~- 109 (186)
.+..+||++|+++|+-+..++..+++ +++|+.+|+++..... +....+++++.+++.+. +..+..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~---~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~----L~~l~~~ 150 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE---DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV----LDQMIED 150 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH----HHHHHhc
Confidence 45679999999999999999998865 6899999999977432 45567899999987653 222211
Q ss_pred --CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 110 --KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 110 --~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
..++||+|+.|.. . ......++.+.+ +|+|||.+++
T Consensus 151 ~~~~~~fD~iFiDad--------K------~~Y~~y~~~~l~------------------ll~~GGviv~ 188 (247)
T PLN02589 151 GKYHGTFDFIFVDAD--------K------DNYINYHKRLID------------------LVKVGGVIGY 188 (247)
T ss_pred cccCCcccEEEecCC--------H------HHhHHHHHHHHH------------------hcCCCeEEEE
Confidence 1268999999763 1 113345555666 9999999886
No 174
>PRK04148 hypothetical protein; Provisional
Probab=98.58 E-value=2e-07 Score=70.44 Aligned_cols=100 Identities=20% Similarity=0.135 Sum_probs=72.4
Q ss_pred CCCCEEEEEcccCCh-HHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGA-WLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~-~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.++.+|||+|||+|. .+..+++. +..|+++|+++..++.+... .+.++.+|+.+..... -..+|+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~-------y~~a~l 80 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEI-------YKNAKL 80 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHH-------HhcCCE
Confidence 346799999999996 77777764 67999999999987653322 4688899998876542 468999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
|.+--+ ..++....++.+.+ -|.-++|+.|.+|+.
T Consensus 81 iysirp-------------p~el~~~~~~la~~---------------------~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 81 IYSIRP-------------PRDLQPFILELAKK---------------------INVPLIIKPLSGEEP 115 (134)
T ss_pred EEEeCC-------------CHHHHHHHHHHHHH---------------------cCCCEEEEcCCCCCC
Confidence 988211 12445556666653 378899999998863
No 175
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.55 E-value=1e-07 Score=78.13 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=76.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCC-CeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDA-RVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~-~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
..+||||||.|.++..+|+..++ ..++|||+...-+.. ....- |+.+++.|+..+.. .+ .++++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~----~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~----~~-~~~~sl 120 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE----KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD----YL-IPDGSL 120 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC----CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH----hc-CCCCCe
Confidence 58999999999999999999764 899999999987544 12223 88899998865432 22 245699
Q ss_pred cEEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 115 SVILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 115 D~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
|.|..+.+ |+...-|...+.. ...+++...+ .|+|||.|.+++
T Consensus 121 ~~I~i~FPDPWpKkRH~KRRl~----~~~fl~~~a~------------------~Lk~gG~l~~aT 164 (227)
T COG0220 121 DKIYINFPDPWPKKRHHKRRLT----QPEFLKLYAR------------------KLKPGGVLHFAT 164 (227)
T ss_pred eEEEEECCCCCCCccccccccC----CHHHHHHHHH------------------HccCCCEEEEEe
Confidence 99988764 3333333222211 3366777776 999999999875
No 176
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=2.7e-07 Score=79.77 Aligned_cols=126 Identities=26% Similarity=0.311 Sum_probs=78.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhC-C
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALS-P 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~-~ 109 (186)
++||.+|||+|++||+.|..+.+.....-..+.|++-|+++.++.. .....++.....|+...+...+..+. .
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 5899999999999999998888876431013589999999987422 23334444444454433321111111 0
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHH------------HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSV------------ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
....||-|+||.+|+..|....+...-. .+....+..+.+ +||+||+||-
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~------------------lLk~GG~lVY 294 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLR------------------LLKVGGRLVY 294 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHH------------------HhcCCCEEEE
Confidence 2358999999999987766433221111 122344455555 9999999997
Q ss_pred EEc
Q 038391 178 KLL 180 (186)
Q Consensus 178 ~~~ 180 (186)
++=
T Consensus 295 STC 297 (375)
T KOG2198|consen 295 STC 297 (375)
T ss_pred ecc
Confidence 653
No 177
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.55 E-value=3.5e-07 Score=78.56 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=54.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------c-CCCCCeEEEE-eeecCCChhhHhhhCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------L-HCDARVQTVS-ADVINLPSNQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~-~~~~~~~~~~-~d~~~~~~~~l~~~~~ 109 (186)
++.++||||||+|.+...++.+.. +.+++|+|+++.++.. + ....++++.+ .+..+.. .....
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~----~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY----GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIH 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC----CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hcccc
Confidence 457999999999999888887753 4799999999988654 2 2344666653 2222211 11111
Q ss_pred CCCCccEEEeCCCCCCC
Q 038391 110 KQKGFSVILSDMCPSVS 126 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~ 126 (186)
+.+.||+|+||+++...
T Consensus 186 ~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 186 KNERFDATLCNPPFHAS 202 (321)
T ss_pred cCCceEEEEeCCCCcCc
Confidence 35689999999875443
No 178
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.53 E-value=4e-07 Score=73.46 Aligned_cols=103 Identities=21% Similarity=0.252 Sum_probs=61.6
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHh
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
.+..++......++...|.|+|||-+.++..+.. +.+|+.+|+-... -.+...|+.+++.+
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~-------~~~V~SfDLva~n---------~~Vtacdia~vPL~--- 119 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN-------KHKVHSFDLVAPN---------PRVTACDIANVPLE--- 119 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S----------EEEEESS-SS---------TTEEES-TTS-S-----
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc-------CceEEEeeccCCC---------CCEEEecCccCcCC---
Confidence 3444555555556678999999999988854432 3689999987754 23556888877653
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
++++|++++-.+ ..|.- ....+.++.| +|||||.|.|.-..+
T Consensus 120 -----~~svDv~VfcLS--LMGTn----------~~~fi~EA~R------------------vLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 120 -----DESVDVAVFCLS--LMGTN----------WPDFIREANR------------------VLKPGGILKIAEVKS 161 (219)
T ss_dssp -----TT-EEEEEEES-----SS-----------HHHHHHHHHH------------------HEEEEEEEEEEEEGG
T ss_pred -----CCceeEEEEEhh--hhCCC----------cHHHHHHHHh------------------eeccCcEEEEEEecc
Confidence 689999987321 22222 4478999998 999999999976543
No 179
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=1.5e-07 Score=74.74 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=54.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.|..|+|+|||||.++...+-. + ..+|+|||+++++++.. ....++.|+..|++.. ...
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l-G----a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-----------~~~ 108 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL-G----ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-----------RGK 108 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc-C----CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-----------CCc
Confidence 5778999999999998887775 2 36999999999997541 2445799999998765 357
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|.++.|++
T Consensus 109 ~dtvimNPP 117 (198)
T COG2263 109 FDTVIMNPP 117 (198)
T ss_pred cceEEECCC
Confidence 899998876
No 180
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.46 E-value=2.6e-07 Score=78.52 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=63.5
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC--C--CCCeEEEEeeecCCChhh
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH--C--DARVQTVSADVINLPSNQ 103 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~--~--~~~~~~~~~d~~~~~~~~ 103 (186)
.+++..+. ++++..+||.+||.|+.+..+++.+++ .++|+|+|.++.++..+. . ..+++++++|+.++...
T Consensus 9 ~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~---~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~- 83 (296)
T PRK00050 9 DEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGP---KGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV- 83 (296)
T ss_pred HHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCC---CCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH-
Confidence 34555544 577889999999999999999999854 589999999999975521 1 35899999998875321
Q ss_pred HhhhCCCCCCccEEEeCC
Q 038391 104 VRALSPKQKGFSVILSDM 121 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~ 121 (186)
+.. .-.++|.|+.|.
T Consensus 84 l~~---~~~~vDgIl~DL 98 (296)
T PRK00050 84 LAE---GLGKVDGILLDL 98 (296)
T ss_pred HHc---CCCccCEEEECC
Confidence 111 012799999975
No 181
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.46 E-value=2.7e-07 Score=73.21 Aligned_cols=110 Identities=20% Similarity=0.235 Sum_probs=66.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
-+|.++||+.||+|.++...+.+ |..+|+.||.++..+.. .....++..+..|+... +..+...
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-----GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~----l~~~~~~ 111 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-----GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF----LLKLAKK 111 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-----T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH----HHHHHHC
T ss_pred cCCCeEEEcCCccCccHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH----HHhhccc
Confidence 36889999999999999999988 34699999999987432 12233577788875432 2222113
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+.+||+|+.|+|...... .......+.. .. +|+++|.+++.+-..+
T Consensus 112 ~~~fDiIflDPPY~~~~~--------~~~~l~~l~~-~~------------------~l~~~~~ii~E~~~~~ 157 (183)
T PF03602_consen 112 GEKFDIIFLDPPYAKGLY--------YEELLELLAE-NN------------------LLNEDGLIIIEHSKKE 157 (183)
T ss_dssp TS-EEEEEE--STTSCHH--------HHHHHHHHHH-TT------------------SEEEEEEEEEEEETTS
T ss_pred CCCceEEEECCCcccchH--------HHHHHHHHHH-CC------------------CCCCCEEEEEEecCCC
Confidence 579999999986322110 0112222222 23 8999999999885543
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.45 E-value=4.8e-07 Score=74.86 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=55.2
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.++.+|||+|||+|.++..+++.. .+|+++|+++.++... ....+++++++|+...+..
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~------~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~---------- 90 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRA------KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP---------- 90 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhC------CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh----------
Confidence 5678899999999999999999983 5799999999996542 1246788999998776532
Q ss_pred Ccc---EEEeCCC
Q 038391 113 GFS---VILSDMC 122 (186)
Q Consensus 113 ~~D---~V~~d~~ 122 (186)
++| +|++|.+
T Consensus 91 ~~d~~~~vvsNlP 103 (253)
T TIGR00755 91 DFPKQLKVVSNLP 103 (253)
T ss_pred HcCCcceEEEcCC
Confidence 344 8888875
No 183
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.45 E-value=1.7e-07 Score=79.25 Aligned_cols=108 Identities=23% Similarity=0.236 Sum_probs=69.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCC-CCCeEEEEeeecCCChhhHhhhCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHC-DARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~-~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
.+|++|||+.|=+|+++.+.+.. |..+|++||.|...++. +.. ..++++++.|+.+.- ..+.
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-----GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l----~~~~- 191 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-----GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFL----KRLK- 191 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-----TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHH----HHHH-
T ss_pred cCCCceEEecCCCCHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHH----HHHh-
Confidence 35889999999999999988764 13489999999998754 222 357899999986532 1111
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+||+|+|.-..+.+.. ..-....+..+.+ +|+|||.|++.
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~-----~~~y~~L~~~a~~------------------ll~~gG~l~~~ 237 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDL-----ERDYKKLLRRAMK------------------LLKPGGLLLTC 237 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEH-----HHHHHHHHHHHHH------------------TEEEEEEEEEE
T ss_pred cCCCCCEEEECCCCCCCCHHHH-----HHHHHHHHHHHHH------------------hcCCCCEEEEE
Confidence 2468999999987443333222 2233355556666 99999998754
No 184
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.43 E-value=1.4e-06 Score=71.30 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=72.8
Q ss_pred CCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 35 KLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
..+.+..+|+|+|+|.|.++..+++.++ +.+++.+|. |..++......+++++.+|+.+ +. .. +
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~f~-~~---------P~-~ 159 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYP----NLRATVFDL-PEVIEQAKEADRVEFVPGDFFD-PL---------PV-A 159 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHST----TSEEEEEE--HHHHCCHHHTTTEEEEES-TTT-CC---------SS-E
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCC----CCcceeecc-HhhhhccccccccccccccHHh-hh---------cc-c
Confidence 3356678999999999999999999986 589999998 5556654447899999999973 21 23 9
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccC--cEEEEEEc
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPG--GHLVIKLL 180 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lkpg--G~lvi~~~ 180 (186)
|+++.. .-.|... .+.....++.+.+ .|+|| |+|+|.-.
T Consensus 160 D~~~l~-----~vLh~~~----d~~~~~iL~~~~~------------------al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 160 DVYLLR-----HVLHDWS----DEDCVKILRNAAA------------------ALKPGKDGRLLIIEM 200 (241)
T ss_dssp SEEEEE-----SSGGGS-----HHHHHHHHHHHHH------------------HSEECTTEEEEEEEE
T ss_pred cceeee-----hhhhhcc----hHHHHHHHHHHHH------------------HhCCCCCCeEEEEee
Confidence 999872 2234333 2445566666666 89999 99887643
No 185
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.42 E-value=1.5e-07 Score=84.24 Aligned_cols=101 Identities=23% Similarity=0.302 Sum_probs=65.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC-------CCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV-------PSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i-------~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+..|+|+|||+|-+....++.....+...+|++||.++.++ .......+++++++|+.+... ..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l---------pe 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL---------PE 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH---------SS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC---------CC
Confidence 57899999999998877765521000136999999998763 224456789999999988763 35
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
++|+|++-. -|. ..+. ++..+.+..+.+ .|||+|+++
T Consensus 258 kvDIIVSEl----LGs-fg~n----El~pE~Lda~~r------------------fLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSEL----LGS-FGDN----ELSPECLDAADR------------------FLKPDGIMI 294 (448)
T ss_dssp -EEEEEE-------BT-TBTT----TSHHHHHHHGGG------------------GEEEEEEEE
T ss_pred ceeEEEEec----cCC-cccc----ccCHHHHHHHHh------------------hcCCCCEEe
Confidence 999999953 121 1122 224455676777 999999986
No 186
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=9.9e-07 Score=70.10 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=56.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.|.++||+.+|+|.++...+.+ +..+++.||.+...... .....+..++..|+.. .+.... ..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR-----GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~----~L~~~~-~~ 112 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR-----GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR----ALKQLG-TR 112 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC-----CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH----HHHhcC-CC
Confidence 5889999999999999999998 34699999999987432 2345678888888762 222222 12
Q ss_pred CCccEEEeCCCCC
Q 038391 112 KGFSVILSDMCPS 124 (186)
Q Consensus 112 ~~~D~V~~d~~~~ 124 (186)
++||+|+.|+|+.
T Consensus 113 ~~FDlVflDPPy~ 125 (187)
T COG0742 113 EPFDLVFLDPPYA 125 (187)
T ss_pred CcccEEEeCCCCc
Confidence 3599999998744
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=4.1e-07 Score=73.33 Aligned_cols=75 Identities=24% Similarity=0.314 Sum_probs=57.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------------cCCCCCeEEEEeeecCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------------LHCDARVQTVSADVINLP 100 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------------~~~~~~~~~~~~d~~~~~ 100 (186)
++||.+.||+|.|+|+++..++..++. ++..++|||.-++.++. .....++.++.+|+....
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 689999999999999999999988765 35566999988877432 112357888889887654
Q ss_pred hhhHhhhCCCCCCccEEEeCC
Q 038391 101 SNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~ 121 (186)
. +..+||-|.+.+
T Consensus 158 ~--------e~a~YDaIhvGA 170 (237)
T KOG1661|consen 158 A--------EQAPYDAIHVGA 170 (237)
T ss_pred C--------ccCCcceEEEcc
Confidence 3 257999999943
No 188
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.39 E-value=3.6e-07 Score=73.54 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=52.7
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChh
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSN 102 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~ 102 (186)
.......+++++.|+|+.||.|.++..+++..+ +..|+++|++|..+.. ++...++..+++|+.....
T Consensus 92 r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~----~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~- 166 (200)
T PF02475_consen 92 RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGK----AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP- 166 (200)
T ss_dssp HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-----SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----
T ss_pred HHHHHhcCCcceEEEEccCCccHHHHHHhhhcC----ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-
Confidence 334445578999999999999999999998532 4689999999987432 5566778899999887642
Q ss_pred hHhhhCCCCCCccEEEeCCC
Q 038391 103 QVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~ 122 (186)
...||.|+.+.+
T Consensus 167 --------~~~~drvim~lp 178 (200)
T PF02475_consen 167 --------EGKFDRVIMNLP 178 (200)
T ss_dssp --------TT-EEEEEE--T
T ss_pred --------ccccCEEEECCh
Confidence 468999999764
No 189
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.37 E-value=7.9e-07 Score=76.36 Aligned_cols=69 Identities=20% Similarity=0.333 Sum_probs=54.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC------CCCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK------VPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~------i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.++.|||+|||+|.++.+.++. |..+|++||.|.-. ++.+....+++++.+.+.+... .+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-----GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---------PE 242 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-----GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIEL---------PE 242 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-----CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccC---------ch
Confidence 4779999999999888887776 34699999998744 4556777899999998876542 46
Q ss_pred CccEEEeCC
Q 038391 113 GFSVILSDM 121 (186)
Q Consensus 113 ~~D~V~~d~ 121 (186)
+.|+||+.+
T Consensus 243 k~DviISEP 251 (517)
T KOG1500|consen 243 KVDVIISEP 251 (517)
T ss_pred hccEEEecc
Confidence 899999954
No 190
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.37 E-value=7.2e-07 Score=73.40 Aligned_cols=126 Identities=25% Similarity=0.309 Sum_probs=89.7
Q ss_pred hchhhhhHH--hHHHHHHH---cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC----CCCcCCCC
Q 038391 17 LGYVARSAF--KLLQIQKQ---YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK----VPSLHCDA 87 (186)
Q Consensus 17 ~~y~~r~~~--~l~~~~~~---~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~----i~~~~~~~ 87 (186)
..|+.+.+| ||..-+.- ..+++||.+||-||+++|..-+++++.+++ .+-||+||+|+.. +.-++...
T Consensus 129 vEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGp---eG~VYAVEfs~rsGRdL~nmAkkRt 205 (317)
T KOG1596|consen 129 VEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGP---EGCVYAVEFSHRSGRDLINMAKKRT 205 (317)
T ss_pred EEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCC---CceEEEEEecccchHHHHHHhhccC
Confidence 347777766 66653322 224799999999999999999999999986 6899999999976 22244556
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCc
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSG 167 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (186)
|+..+..|+..+.... + .-.-+|+|++|.++ + .+...+..++..
T Consensus 206 NiiPIiEDArhP~KYR---m--lVgmVDvIFaDvaq-------p------dq~RivaLNA~~------------------ 249 (317)
T KOG1596|consen 206 NIIPIIEDARHPAKYR---M--LVGMVDVIFADVAQ-------P------DQARIVALNAQY------------------ 249 (317)
T ss_pred CceeeeccCCCchhee---e--eeeeEEEEeccCCC-------c------hhhhhhhhhhhh------------------
Confidence 7777778887665321 1 12468999998642 1 124455556666
Q ss_pred ccccCcEEEEEEcc
Q 038391 168 VLKPGGHLVIKLLE 181 (186)
Q Consensus 168 ~LkpgG~lvi~~~~ 181 (186)
+||+||.++|.+-.
T Consensus 250 FLk~gGhfvisika 263 (317)
T KOG1596|consen 250 FLKNGGHFVISIKA 263 (317)
T ss_pred hhccCCeEEEEEec
Confidence 99999999998754
No 191
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1.1e-06 Score=78.23 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=65.4
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINL 99 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~ 99 (186)
++.+.........++++|||+-||.|.++..++++ ..+|+|+|+++.+++. .+...|++|..++....
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHH
Confidence 56665555555567889999999999999999977 4799999999999765 23445688888887665
Q ss_pred ChhhHhhhCCCCCCccEEEeCCC
Q 038391 100 PSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
..... .+..+|.|+.|++
T Consensus 354 ~~~~~-----~~~~~d~VvvDPP 371 (432)
T COG2265 354 TPAWW-----EGYKPDVVVVDPP 371 (432)
T ss_pred hhhcc-----ccCCCCEEEECCC
Confidence 43210 2458999999986
No 192
>PLN02823 spermine synthase
Probab=98.35 E-value=1.2e-06 Score=75.80 Aligned_cols=106 Identities=21% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
...+||.+|+|.|..+..+.+..+ ..+|+.||+++..++.+ ..+++++++.+|.......
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~----~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~------ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT----VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK------ 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC----CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh------
Confidence 457999999999999998888642 36899999999885431 1357899999988754211
Q ss_pred CCCCCccEEEeCCCCCCC-CCcccchHHHHHHHHHHHH-HHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 109 PKQKGFSVILSDMCPSVS-GITTKDAALSVELGMRAVD-LALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..++||+|++|..-+.. +... . -....+++ .+.+ .|+|||.++++.
T Consensus 173 -~~~~yDvIi~D~~dp~~~~~~~--~----Lyt~eF~~~~~~~------------------~L~p~Gvlv~q~ 220 (336)
T PLN02823 173 -RDEKFDVIIGDLADPVEGGPCY--Q----LYTKSFYERIVKP------------------KLNPGGIFVTQA 220 (336)
T ss_pred -CCCCccEEEecCCCccccCcch--h----hccHHHHHHHHHH------------------hcCCCcEEEEec
Confidence 25689999999631111 1100 0 01335665 6666 999999999874
No 193
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.34 E-value=1.8e-06 Score=71.71 Aligned_cols=100 Identities=21% Similarity=0.278 Sum_probs=70.6
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHh
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVR 105 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~ 105 (186)
.+..++..+...+....|.|+|||-+.+++ .. .-.|+.+|+-+.. -+++..|+.+++.+
T Consensus 167 Pld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~------~~kV~SfDL~a~~---------~~V~~cDm~~vPl~--- 225 (325)
T KOG3045|consen 167 PLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE------RHKVHSFDLVAVN---------ERVIACDMRNVPLE--- 225 (325)
T ss_pred hHHHHHHHHHhCcCceEEEecccchhhhhh---cc------ccceeeeeeecCC---------CceeeccccCCcCc---
Confidence 345555555544555688999999998776 21 3689999987765 34566788887653
Q ss_pred hhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 106 ALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 106 ~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
++++|++++- ..+-..+ ...++.++.| +||+||.|.|.-..
T Consensus 226 -----d~svDvaV~C-----LSLMgtn-------~~df~kEa~R------------------iLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 226 -----DESVDVAVFC-----LSLMGTN-------LADFIKEANR------------------ILKPGGLLYIAEVK 266 (325)
T ss_pred -----cCcccEEEee-----Hhhhccc-------HHHHHHHHHH------------------HhccCceEEEEehh
Confidence 7899999772 1121122 5579999999 99999999987654
No 194
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.30 E-value=2.7e-06 Score=71.09 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=64.5
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cC--CCCCeEEEEeeecCCC
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LH--CDARVQTVSADVINLP 100 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~--~~~~~~~~~~d~~~~~ 100 (186)
++-+..-..++++..||++|.|||.+|..+.+. +.+|+++|+++.|++. .. ....++++.+|+....
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 333444456899999999999999999999998 6899999999999654 22 2367899999998764
Q ss_pred hhhHhhhCCCCCCccEEEeCCCCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMCPSV 125 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~~~~ 125 (186)
. ..||++++|.++..
T Consensus 121 ~----------P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 121 L----------PRFDGCVSNLPYQI 135 (315)
T ss_pred C----------cccceeeccCCccc
Confidence 2 37999999876443
No 195
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.29 E-value=1.2e-06 Score=72.87 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
...++||||+|.|..|..++..+ .+|++.|+|+.|...-.. .+.+.+ +..+... .+.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f------~~v~aTE~S~~Mr~rL~~-kg~~vl--~~~~w~~--------~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF------KEVYATEASPPMRWRLSK-KGFTVL--DIDDWQQ--------TDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc------ceEEeecCCHHHHHHHHh-CCCeEE--ehhhhhc--------cCCceEEEe
Confidence 35689999999999999999987 579999999999432111 123333 3222211 246899998
Q ss_pred eCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|- +..-. .......+..+++ .|+|+|++++.+.
T Consensus 157 cL-----NvLDR------c~~P~~LL~~i~~------------------~l~p~G~lilAvV 189 (265)
T PF05219_consen 157 CL-----NVLDR------CDRPLTLLRDIRR------------------ALKPNGRLILAVV 189 (265)
T ss_pred eh-----hhhhc------cCCHHHHHHHHHH------------------HhCCCCEEEEEEE
Confidence 81 11111 2225567777777 8999999998764
No 196
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=2.6e-06 Score=71.04 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=62.7
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---c-CCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---L-HCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+.++..||++|+|.|.+|..++++ +.+|++||+++.+++. . ....+++++++|+.......+
T Consensus 27 ~~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l------- 93 (259)
T COG0030 27 NISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSL------- 93 (259)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhh-------
Confidence 3566899999999999999999998 5789999999999654 1 245789999999998865422
Q ss_pred CCccEEEeCCCCCCC
Q 038391 112 KGFSVILSDMCPSVS 126 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~ 126 (186)
-+++.|++|.+.+++
T Consensus 94 ~~~~~vVaNlPY~Is 108 (259)
T COG0030 94 AQPYKVVANLPYNIS 108 (259)
T ss_pred cCCCEEEEcCCCccc
Confidence 178999999875543
No 197
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=3.6e-06 Score=66.55 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=74.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
.+.++++|||+|..+.++++..++ .....+.||++.+.+. .....++..++.|..+-- ..+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~---~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l---------~~~~V 111 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGP---QALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL---------RNESV 111 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCC---CceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh---------ccCCc
Confidence 678999999999999999999864 6789999999998654 223345677777764321 23799
Q ss_pred cEEEeCCCCCCCCC-----cccc-----hHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 115 SVILSDMCPSVSGI-----TTKD-----AALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 115 D~V~~d~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
|+++.|.+.-.... ..+. .....+.....+..... +|.|.|.+++..++.
T Consensus 112 DvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~------------------iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 112 DVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPD------------------ILSPRGVFYLVALRA 171 (209)
T ss_pred cEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhh------------------hcCcCceEEeeehhh
Confidence 99999875321111 1110 01112223344444444 899999999887764
No 198
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.26 E-value=1.7e-06 Score=75.38 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=53.5
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhC-----C
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALS-----P 109 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~-----~ 109 (186)
.+|||++||+|.++..+++.. .+|+|||+++.+++.+ ....+++++++|+.+.... +.... .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhcccccccc
Confidence 579999999999999988873 6899999999997541 2224788999988653211 11000 0
Q ss_pred ----CCCCccEEEeCCCC
Q 038391 110 ----KQKGFSVILSDMCP 123 (186)
Q Consensus 110 ----~~~~~D~V~~d~~~ 123 (186)
...+||+|+.|+|.
T Consensus 281 ~~~~~~~~~D~v~lDPPR 298 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR 298 (362)
T ss_pred cccccCCCCCEEEECCCC
Confidence 02258999999873
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.25 E-value=1.9e-06 Score=74.88 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=52.7
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHh--hh---C-
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVR--AL---S- 108 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~--~~---~- 108 (186)
.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+ ....+++++++|+.+....... .+ .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~------~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~ 272 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF------RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKG 272 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC------CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccc
Confidence 479999999999999999873 5899999999997541 2224688999988653211000 00 0
Q ss_pred --CCCCCccEEEeCCC
Q 038391 109 --PKQKGFSVILSDMC 122 (186)
Q Consensus 109 --~~~~~~D~V~~d~~ 122 (186)
.....||+|+.|++
T Consensus 273 ~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 273 IDLKSYNCSTIFVDPP 288 (353)
T ss_pred cccccCCCCEEEECCC
Confidence 00124899999986
No 200
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.23 E-value=6.5e-07 Score=75.89 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=52.0
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCC---CCCCCeEEEEeCCCCCCCC-------cC-CCCCeEEEEee
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGP---LDNGGSVVGIDVKKVKVPS-------LH-CDARVQTVSAD 95 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~---~~~~~~v~gvDis~~~i~~-------~~-~~~~~~~~~~d 95 (186)
+.++........++.+|+|.+||+|.++..+.+.+.. .....+++|+|+++.++.. +. ......+..+|
T Consensus 34 i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d 113 (311)
T PF02384_consen 34 IVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGD 113 (311)
T ss_dssp HHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-
T ss_pred HHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccc
Confidence 3444444334577889999999999999988875410 0014799999999987432 11 11223466676
Q ss_pred ecCCChhhHhhhCCCCCCccEEEeCCCCCC
Q 038391 96 VINLPSNQVRALSPKQKGFSVILSDMCPSV 125 (186)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~ 125 (186)
........ ...+||+|++|+|...
T Consensus 114 ~l~~~~~~------~~~~~D~ii~NPPf~~ 137 (311)
T PF02384_consen 114 SLENDKFI------KNQKFDVIIGNPPFGS 137 (311)
T ss_dssp TTTSHSCT------ST--EEEEEEE--CTC
T ss_pred cccccccc------cccccccccCCCCccc
Confidence 54332110 1468999999986443
No 201
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.22 E-value=1.9e-06 Score=78.17 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=74.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
..+..+||||||.|.++..+|...+ ...++|+|+....+.. ...-.|+.++..|+.. +.... +.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p----~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~-----~~~~~-~~ 415 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNP----DALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL-----ILNDL-PN 415 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCC----CCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH-----HHHhc-Cc
Confidence 3456899999999999999999975 4899999999976443 1223467776665432 22222 46
Q ss_pred CCccEEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 112 KGFSVILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 112 ~~~D~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+++|.|+.+.+ |+...-|...+.. ...++....+ .|||||.+.+++
T Consensus 416 ~sv~~i~i~FPDPWpKkrh~krRl~----~~~fl~~~~~------------------~Lk~gG~i~~~T 462 (506)
T PRK01544 416 NSLDGIYILFPDPWIKNKQKKKRIF----NKERLKILQD------------------KLKDNGNLVFAS 462 (506)
T ss_pred ccccEEEEECCCCCCCCCCcccccc----CHHHHHHHHH------------------hcCCCCEEEEEc
Confidence 78999988764 3333333332211 2356666676 999999998875
No 202
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.20 E-value=4.1e-06 Score=70.96 Aligned_cols=105 Identities=17% Similarity=0.153 Sum_probs=62.4
Q ss_pred CEEEEEcccCCh--HH--HHHHHHhCCCCCCCeEEEEeCCCCCCCCcC--------------------------------
Q 038391 41 SSVLDLGCAPGA--WL--QVACQSLGPLDNGGSVVGIDVKKVKVPSLH-------------------------------- 84 (186)
Q Consensus 41 ~~vLDlGcG~G~--~~--~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-------------------------------- 84 (186)
-+|+..||++|. ++ ..+.+.++......+|+|.||++.+|+.+.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999995 33 333343322112468999999998864310
Q ss_pred -----CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCC
Q 038391 85 -----CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNN 159 (186)
Q Consensus 85 -----~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
....++|.+.|+.+.+.. +.+.||+|+|.- . .++. + .+....++....+
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~-------~~~~fD~I~cRN---v-liyF-~----~~~~~~vl~~l~~---------- 250 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWA-------VPGPFDAIFCRN---V-MIYF-D----KTTQERILRRFVP---------- 250 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCc-------cCCCcceeeHhh---H-HhcC-C----HHHHHHHHHHHHH----------
Confidence 002345555555432211 246899999931 1 1111 1 2335567777777
Q ss_pred CCCCCCCcccccCcEEEEEE
Q 038391 160 SDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 160 ~~~~~~~~~LkpgG~lvi~~ 179 (186)
.|+|||.|++-.
T Consensus 251 --------~L~pgG~L~lG~ 262 (287)
T PRK10611 251 --------LLKPDGLLFAGH 262 (287)
T ss_pred --------HhCCCcEEEEeC
Confidence 999999998764
No 203
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.18 E-value=8.7e-07 Score=68.53 Aligned_cols=76 Identities=22% Similarity=0.398 Sum_probs=55.2
Q ss_pred EEEeCCCCCCCCcC---------CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHH
Q 038391 71 VGIDVKKVKVPSLH---------CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGM 141 (186)
Q Consensus 71 ~gvDis~~~i~~~~---------~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~ 141 (186)
.|+|+|+.|++.++ ...+++++++|+.+++. ++++||+|++.. +.+.... ..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~--------~~~~fD~v~~~~-----~l~~~~d------~~ 61 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF--------DDCEFDAVTMGY-----GLRNVVD------RL 61 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC--------CCCCeeEEEecc-----hhhcCCC------HH
Confidence 48999999986421 12368999999887753 367999999843 2332221 55
Q ss_pred HHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 142 RAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
.++.++.+ +|||||.|+|..+.-+
T Consensus 62 ~~l~ei~r------------------vLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 62 RAMKEMYR------------------VLKPGSRVSILDFNKS 85 (160)
T ss_pred HHHHHHHH------------------HcCcCeEEEEEECCCC
Confidence 78888888 9999999999877643
No 204
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.15 E-value=1.2e-05 Score=63.02 Aligned_cols=122 Identities=24% Similarity=0.234 Sum_probs=64.2
Q ss_pred hhhhHHhHHHHHHH------cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cC--
Q 038391 20 VARSAFKLLQIQKQ------YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LH-- 84 (186)
Q Consensus 20 ~~r~~~~l~~~~~~------~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~-- 84 (186)
.+.++..|.+.+.. .....++.+||+||||+|..+..++...+ ..+|+..|..+ .+.. +.
T Consensus 20 vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~----~~~Vv~TD~~~-~l~~l~~Ni~~N~~~ 94 (173)
T PF10294_consen 20 VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFG----AARVVLTDYNE-VLELLRRNIELNGSL 94 (173)
T ss_dssp ---HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-----SEEEEEE-S--HHHHHHHHHHTT---
T ss_pred EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccC----CceEEEeccch-hhHHHHHHHHhcccc
Confidence 45556666655444 23356788999999999999988888743 47999999998 4322 11
Q ss_pred CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCC
Q 038391 85 CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSST 164 (186)
Q Consensus 85 ~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (186)
...++.+...|-.+.... ... ..++||+|++. .-.+... .....+....+
T Consensus 95 ~~~~v~v~~L~Wg~~~~~---~~~-~~~~~D~Ilas-----Dv~Y~~~------~~~~L~~tl~~--------------- 144 (173)
T PF10294_consen 95 LDGRVSVRPLDWGDELDS---DLL-EPHSFDVILAS-----DVLYDEE------LFEPLVRTLKR--------------- 144 (173)
T ss_dssp -----EEEE--TTS-HHH---HHH-S-SSBSEEEEE-----S--S-GG------GHHHHHHHHHH---------------
T ss_pred ccccccCcEEEecCcccc---ccc-ccccCCEEEEe-----cccchHH------HHHHHHHHHHH---------------
Confidence 234556555554332111 111 24689999982 1223322 24556666666
Q ss_pred CCcccccCcEEEEEE
Q 038391 165 DSGVLKPGGHLVIKL 179 (186)
Q Consensus 165 ~~~~LkpgG~lvi~~ 179 (186)
+|+++|.+++..
T Consensus 145 ---ll~~~~~vl~~~ 156 (173)
T PF10294_consen 145 ---LLKPNGKVLLAY 156 (173)
T ss_dssp ---HBTT-TTEEEEE
T ss_pred ---HhCCCCEEEEEe
Confidence 888988866554
No 205
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.12 E-value=1.4e-05 Score=64.34 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=72.0
Q ss_pred HHHHHHcCCCCCCC-EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCC
Q 038391 28 LQIQKQYKLIKPGS-SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINL 99 (186)
Q Consensus 28 ~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~ 99 (186)
.+++.++ +++.. +||+||||+|....++++.++. .+-.--|+.+..... .....-..-+..|++..
T Consensus 15 l~vL~~~--l~~~~~~vLEiaSGtGqHa~~FA~~lP~----l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~ 88 (204)
T PF06080_consen 15 LEVLKQY--LPDSGTRVLEIASGTGQHAVYFAQALPH----LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAP 88 (204)
T ss_pred HHHHHHH--hCccCceEEEEcCCccHHHHHHHHHCCC----CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCC
Confidence 4444443 23443 5999999999999999999863 666666777766422 11111112234566554
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.......-.....+||.|+| .+..|.. ..+.++..+..+.+ .|++||.|++=
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~-----~N~lHI~----p~~~~~~lf~~a~~------------------~L~~gG~L~~Y 140 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFC-----INMLHIS----PWSAVEGLFAGAAR------------------LLKPGGLLFLY 140 (204)
T ss_pred CCccccccccCCCCcceeee-----hhHHHhc----CHHHHHHHHHHHHH------------------hCCCCCEEEEe
Confidence 21100000002468999998 3334443 35667788888888 99999999873
No 206
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.11 E-value=9.7e-07 Score=68.85 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=46.3
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
+.|+|++||.|+.++.+|+.+ .+|++||+++.++.- .....++.++++|+.+.... +. ....
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~----~~-~~~~ 69 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR----LK-SNKI 69 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG----B------
T ss_pred CEEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh----cc-cccc
Confidence 379999999999999999984 689999999998653 22356899999998764321 11 1112
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|+|+.++|
T Consensus 70 ~D~vFlSPP 78 (163)
T PF09445_consen 70 FDVVFLSPP 78 (163)
T ss_dssp -SEEEE---
T ss_pred ccEEEECCC
Confidence 899999763
No 207
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=1.2e-05 Score=65.55 Aligned_cols=104 Identities=18% Similarity=0.237 Sum_probs=78.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-------CcCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-------SLHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-------~~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
-.+++.||+|.=+|+-+..+|..+++ +++|+++|+.+...+ .+.....++++++.+.+--.+.+.+. .
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~---dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~--~ 146 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPE---DGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG--E 146 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCC---CceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC--C
Confidence 45789999999999999999999987 799999999997743 25566789999998765333333333 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.+.||+++.|. +.+. -....+.+.+ +||+||.|++-
T Consensus 147 ~~tfDfaFvDa--------dK~n------Y~~y~e~~l~------------------Llr~GGvi~~D 182 (237)
T KOG1663|consen 147 SGTFDFAFVDA--------DKDN------YSNYYERLLR------------------LLRVGGVIVVD 182 (237)
T ss_pred CCceeEEEEcc--------chHH------HHHHHHHHHh------------------hcccccEEEEe
Confidence 67999999964 2221 2256666666 99999999874
No 208
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.10 E-value=5e-06 Score=73.05 Aligned_cols=95 Identities=24% Similarity=0.211 Sum_probs=65.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++.+|||++||+|..+..++...+ ..+|+++|+++..++.. +...++.+.++|+..+.. ..+
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~----~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~--------~~~ 124 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG----VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH--------EER 124 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC----CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh--------hcC
Confidence 356899999999999999998753 25899999999886531 122345567777643211 035
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+||+|+.|+. |. ...+++.+.+ .+++||.+.++
T Consensus 125 ~fD~V~lDP~----Gs-----------~~~~l~~al~------------------~~~~~gilyvS 157 (382)
T PRK04338 125 KFDVVDIDPF----GS-----------PAPFLDSAIR------------------SVKRGGLLCVT 157 (382)
T ss_pred CCCEEEECCC----CC-----------cHHHHHHHHH------------------HhcCCCEEEEE
Confidence 7999999862 21 1135555444 78999999998
No 209
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=1.7e-06 Score=70.98 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=73.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC--CCCeEEE--EeeecCCChhhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC--DARVQTV--SADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~--~~~~~~~--~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
.-..++|+|||.|....++...- -.+++-+|.|..|++..+. ++.+... .+|-.-+++ ..+++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-----vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf--------~ens~ 138 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-----VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDF--------KENSV 138 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-----hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccc--------cccch
Confidence 35689999999999999998872 3589999999999887432 2333333 344322222 46899
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
|+|++.++ .|+.++ ...++..+.. .|||.|.|+-.+|-|+.+
T Consensus 139 DLiisSls-----lHW~Nd------LPg~m~~ck~------------------~lKPDg~FiasmlggdTL 180 (325)
T KOG2940|consen 139 DLIISSLS-----LHWTND------LPGSMIQCKL------------------ALKPDGLFIASMLGGDTL 180 (325)
T ss_pred hhhhhhhh-----hhhhcc------CchHHHHHHH------------------hcCCCccchhHHhccccH
Confidence 99999653 444443 3444555555 899999999999988763
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.09 E-value=1.6e-05 Score=67.11 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=75.9
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
++||-+|-|.|+.++.+.++.+ -.+++.|||.+..++. ...++|++++..|....-.. .
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~----ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~----~--- 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP----VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRD----C--- 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC----cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHh----C---
Confidence 6999999999999999999954 2699999999988543 11258899998887654322 2
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
.++||+|++|...+.+...... ...+.+.+.+ .|+++|+++.+
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lf-------t~eFy~~~~~------------------~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALF-------TEEFYEGCRR------------------ALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccC-------CHHHHHHHHH------------------hcCCCcEEEEe
Confidence 3489999998753321111111 4578888888 99999999998
No 211
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=98.06 E-value=2e-05 Score=63.54 Aligned_cols=111 Identities=23% Similarity=0.344 Sum_probs=57.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC-----CCcCCCCCeEEEEeeecCCCh-hhHhhhCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV-----PSLHCDARVQTVSADVINLPS-NQVRALSPK 110 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i-----~~~~~~~~~~~~~~d~~~~~~-~~l~~~~~~ 110 (186)
++|. .|+++|...|+-+..++..+...++.++|+||||.-... +.+....+++++++|..+... ..+..+. .
T Consensus 31 ~kPd-~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~-~ 108 (206)
T PF04989_consen 31 LKPD-LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELA-S 108 (206)
T ss_dssp H--S-EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred hCCC-eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhh-c
Confidence 4444 999999999999988886553222368999999954442 323344799999999876542 1111221 1
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.....+|+.|. .|..++ +...++.... ++++|+++|+.-
T Consensus 109 ~~~~vlVilDs------~H~~~h------vl~eL~~y~p------------------lv~~G~Y~IVeD 147 (206)
T PF04989_consen 109 PPHPVLVILDS------SHTHEH------VLAELEAYAP------------------LVSPGSYLIVED 147 (206)
T ss_dssp --SSEEEEESS----------SS------HHHHHHHHHH------------------T--TT-EEEETS
T ss_pred cCCceEEEECC------CccHHH------HHHHHHHhCc------------------cCCCCCEEEEEe
Confidence 24556888865 444444 3344444444 899999998753
No 212
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=1e-05 Score=69.92 Aligned_cols=106 Identities=21% Similarity=0.246 Sum_probs=77.3
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhH
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l 104 (186)
....+..+|++|||+.||.|.+++.++..- ..+|+++|++|..+.. +.....+..+++|+......
T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g-----~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~-- 253 (341)
T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAKKG-----RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE-- 253 (341)
T ss_pred HHHhhhcCCCEEEEccCCcccchhhhhhcC-----CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc--
Confidence 333445779999999999999999999982 3459999999988432 45556688999998876533
Q ss_pred hhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 105 RALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
-+.+|-|+.+.+. . ...++..+.+ .+++||++-.-.+.-+
T Consensus 254 ------~~~aDrIim~~p~---~------------a~~fl~~A~~------------------~~k~~g~iHyy~~~~e 293 (341)
T COG2520 254 ------LGVADRIIMGLPK---S------------AHEFLPLALE------------------LLKDGGIIHYYEFVPE 293 (341)
T ss_pred ------cccCCEEEeCCCC---c------------chhhHHHHHH------------------HhhcCcEEEEEeccch
Confidence 2689999986642 1 1245555666 8888998877665443
No 213
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.05 E-value=3.9e-06 Score=72.91 Aligned_cols=91 Identities=19% Similarity=0.316 Sum_probs=54.5
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINL 99 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~ 99 (186)
++.+....+...+++ .|||+.||.|.++..+++.+ .+|+|||+++.++..+ +...+++|+++++.++
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDF 256 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHC
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccch
Confidence 455544444434445 89999999999999999984 7999999999997542 3346899998876554
Q ss_pred Chh--------hHhhhCCCCCCccEEEeCCCC
Q 038391 100 PSN--------QVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 100 ~~~--------~l~~~~~~~~~~D~V~~d~~~ 123 (186)
... .+.........+|+|+.|+|.
T Consensus 257 ~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 257 AKALAKAREFNRLKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp CCHHCCS-GGTTGGGS-GGCTTESEEEE---T
T ss_pred hHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC
Confidence 211 111111123478999999863
No 214
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.04 E-value=4.9e-06 Score=66.75 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCEEEEEcccCCh--HH--HHHHHHhCCCC-CCCeEEEEeCCCCCCCCc-------------------------------
Q 038391 40 GSSVLDLGCAPGA--WL--QVACQSLGPLD-NGGSVVGIDVKKVKVPSL------------------------------- 83 (186)
Q Consensus 40 ~~~vLDlGcG~G~--~~--~~l~~~~~~~~-~~~~v~gvDis~~~i~~~------------------------------- 83 (186)
.-+|+..||++|. ++ ..+.+..+... ...+|+|.||++..++.+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 3589999999995 33 33334222111 135999999999775320
Q ss_pred ---CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCC
Q 038391 84 ---HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNS 160 (186)
Q Consensus 84 ---~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (186)
....+++|.+.|+.+.. . ..+.||+|+|. +..- .-..+.....++...+
T Consensus 112 v~~~lr~~V~F~~~NL~~~~-~-------~~~~fD~I~CR-----NVlI----YF~~~~~~~vl~~l~~----------- 163 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPD-P-------PFGRFDLIFCR-----NVLI----YFDPETQQRVLRRLHR----------- 163 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S--------------EEEEEE------SSGG----GS-HHHHHHHHHHHGG-----------
T ss_pred EChHHcCceEEEecccCCCC-c-------ccCCccEEEec-----CEEE----EeCHHHHHHHHHHHHH-----------
Confidence 01135777777776611 1 35799999993 2121 2223446677777887
Q ss_pred CCCCCCcccccCcEEEEEE
Q 038391 161 DSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 161 ~~~~~~~~LkpgG~lvi~~ 179 (186)
.|+|||.|++-.
T Consensus 164 -------~L~pgG~L~lG~ 175 (196)
T PF01739_consen 164 -------SLKPGGYLFLGH 175 (196)
T ss_dssp -------GEEEEEEEEE-T
T ss_pred -------HcCCCCEEEEec
Confidence 999999999853
No 215
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.03 E-value=3.1e-06 Score=70.06 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=74.6
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||-+|-|.|..+..+.+..+ -.+|+.||+++..++. ...+++++++.+|....-.. .
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~----~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~----~ 146 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP----VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKE----T 146 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-----SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHT----S
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC----cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHh----c
Confidence 4578999999999999999988743 3689999999988543 12467899999987654222 2
Q ss_pred CCCCC-CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQK-GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~-~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.+ +||+|+.|..-+....... ....+++.+.+ .|+|+|.++++.
T Consensus 147 ---~~~~yDvIi~D~~dp~~~~~~l-------~t~ef~~~~~~------------------~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 ---QEEKYDVIIVDLTDPDGPAPNL-------FTREFYQLCKR------------------RLKPDGVLVLQA 191 (246)
T ss_dssp ---SST-EEEEEEESSSTTSCGGGG-------SSHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred ---cCCcccEEEEeCCCCCCCcccc-------cCHHHHHHHHh------------------hcCCCcEEEEEc
Confidence 34 8999999874322111111 14578888888 999999999986
No 216
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.00 E-value=5.1e-06 Score=69.71 Aligned_cols=105 Identities=27% Similarity=0.384 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
...+..++|.|||.|-.+..- +...++|.|++...+..+..........+|+.+++.. ..+||.
T Consensus 43 ~~~gsv~~d~gCGngky~~~~--------p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~--------~~s~d~ 106 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGVN--------PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFR--------EESFDA 106 (293)
T ss_pred cCCcceeeecccCCcccCcCC--------CcceeeecchhhhhccccccCCCceeehhhhhcCCCC--------CCcccc
Confidence 445889999999999654321 2478999999999887655444436677888887754 578999
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
+++ .....+..+......++++..+ .|+|||...|-.|.-+
T Consensus 107 ~ls--------iavihhlsT~~RR~~~l~e~~r------------------~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 107 ALS--------IAVIHHLSTRERRERALEELLR------------------VLRPGGNALVYVWALE 147 (293)
T ss_pred chh--------hhhhhhhhhHHHHHHHHHHHHH------------------HhcCCCceEEEEehhh
Confidence 887 4455566677778899999998 9999999988877543
No 217
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.98 E-value=3.4e-05 Score=60.41 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
...|.-||++|+|+|.+|..+.++.-. ...++++|+++..... ++..+.++++.+|+.++.. .+.+. ++..||
T Consensus 46 pesglpVlElGPGTGV~TkaIL~~gv~---~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~-~l~e~--~gq~~D 119 (194)
T COG3963 46 PESGLPVLELGPGTGVITKAILSRGVR---PESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRT-TLGEH--KGQFFD 119 (194)
T ss_pred cccCCeeEEEcCCccHhHHHHHhcCCC---ccceEEEEeCHHHHHHHHHhCCCccccccchhhHHH-HHhhc--CCCeee
Confidence 355779999999999999999988532 4689999999988644 4455667788898876642 12222 367899
Q ss_pred EEEeCC
Q 038391 116 VILSDM 121 (186)
Q Consensus 116 ~V~~d~ 121 (186)
.|+|..
T Consensus 120 ~viS~l 125 (194)
T COG3963 120 SVISGL 125 (194)
T ss_pred eEEecc
Confidence 999954
No 218
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=5.1e-06 Score=63.66 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=52.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---C--CCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---H--CDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~--~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.|+.++|+|||+|-+....+- ++ ...|+|+||.++.++-. . ..-++.+++.|+..+-.. ++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~----~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~--------~g~ 114 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PK----NESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELK--------GGI 114 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CC----CceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhcc--------CCe
Confidence 588999999999988833332 32 36899999999997641 1 123567888888776432 578
Q ss_pred ccEEEeCCCC
Q 038391 114 FSVILSDMCP 123 (186)
Q Consensus 114 ~D~V~~d~~~ 123 (186)
||.++.|+++
T Consensus 115 fDtaviNppF 124 (185)
T KOG3420|consen 115 FDTAVINPPF 124 (185)
T ss_pred EeeEEecCCC
Confidence 9999998863
No 219
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.93 E-value=5.2e-06 Score=59.36 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=42.8
Q ss_pred EEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCC---C---CCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 44 LDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV---K---VPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 44 LDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~---~---i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
|++|+..|..+..+++.+... +.++++++|..+. . ++......++++++++..+. +..+. .+++|++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~-~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----l~~~~--~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN-GRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDF----LPSLP--DGPIDLI 73 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BTEEEEES-THHH----HHHHH--H--EEEE
T ss_pred Ccccccccccccccccccccc-ccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHH----HHHcC--CCCEEEE
Confidence 689999999999999887641 1138999999993 2 22234456799999987542 33332 4699999
Q ss_pred EeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 118 LSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 118 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+.|+. |.. +.....+..+.. .|+|||.+++-
T Consensus 74 ~iDg~------H~~------~~~~~dl~~~~~------------------~l~~ggviv~d 104 (106)
T PF13578_consen 74 FIDGD------HSY------EAVLRDLENALP------------------RLAPGGVIVFD 104 (106)
T ss_dssp EEES---------H------HHHHHHHHHHGG------------------GEEEEEEEEEE
T ss_pred EECCC------CCH------HHHHHHHHHHHH------------------HcCCCeEEEEe
Confidence 99763 332 225566777777 89999999874
No 220
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.93 E-value=2.2e-05 Score=62.36 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=68.2
Q ss_pred cCCCCCCC-EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhh
Q 038391 34 YKLIKPGS-SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRA 106 (186)
Q Consensus 34 ~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~ 106 (186)
...++... +++|+|+|.|.-+..++=..+ ..+++.+|....++.. .-.-.++++++..+.+..
T Consensus 42 ~~~~~~~~~~~lDiGSGaGfPGipLaI~~p----~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~------ 111 (184)
T PF02527_consen 42 LPFLPDFGKKVLDIGSGAGFPGIPLAIARP----DLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE------ 111 (184)
T ss_dssp GGCS-CCCSEEEEETSTTTTTHHHHHHH-T----TSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT------
T ss_pred hhhhccCCceEEecCCCCCChhHHHHHhCC----CCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc------
Confidence 33445544 899999999999999998775 4899999999988543 112246888888776511
Q ss_pred hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEE
Q 038391 107 LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVI 177 (186)
Q Consensus 107 ~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi 177 (186)
...+||+|++.+ ... ....+..+.. +|++||.+++
T Consensus 112 ---~~~~fd~v~aRA------v~~---------l~~l~~~~~~------------------~l~~~G~~l~ 146 (184)
T PF02527_consen 112 ---YRESFDVVTARA------VAP---------LDKLLELARP------------------LLKPGGRLLA 146 (184)
T ss_dssp ---TTT-EEEEEEES------SSS---------HHHHHHHHGG------------------GEEEEEEEEE
T ss_pred ---cCCCccEEEeeh------hcC---------HHHHHHHHHH------------------hcCCCCEEEE
Confidence 357999999944 232 3367777777 9999998764
No 221
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.93 E-value=7.4e-05 Score=70.46 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=57.3
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhC---C---------C--------------------------CCCCeEEEEeCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLG---P---------L--------------------------DNGGSVVGIDVKKV 78 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~---~---------~--------------------------~~~~~v~gvDis~~ 78 (186)
.+++..++|.+||+|.+.+..+.... + . ....+++|+|+++.
T Consensus 188 ~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~ 267 (702)
T PRK11783 188 PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPR 267 (702)
T ss_pred CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHH
Confidence 36788999999999999988876411 0 0 01237999999999
Q ss_pred CCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 79 KVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 79 ~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
++.. +.....+.+.++|+.++.... ..++||+|++|+|
T Consensus 268 av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP 312 (702)
T PRK11783 268 VIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence 9754 334456889999988764321 2357999999976
No 222
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.88 E-value=7.1e-05 Score=63.29 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=78.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.-+|||++||.|....-+....+.. ..+|.-.|+++..++. .....-++|.++|+.+.. .++.+ ..
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~--~l~~l---~p 208 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD--SLAAL---DP 208 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh--Hhhcc---CC
Confidence 4589999999999988888876531 2589999999988654 345555699999987643 33333 34
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE--ccCC
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL--LESQ 183 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~--~~~~ 183 (186)
..++++. +|.+... ...+++...+.-... .+.|||+||-+- ||.+
T Consensus 209 ~P~l~iV------sGL~ElF--~Dn~lv~~sl~gl~~------------------al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 209 APTLAIV------SGLYELF--PDNDLVRRSLAGLAR------------------ALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred CCCEEEE------ecchhhC--CcHHHHHHHHHHHHH------------------HhCCCcEEEEcCCCCCcc
Confidence 6799987 4454432 233556667777776 899999999776 6543
No 223
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.87 E-value=2.6e-05 Score=68.38 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=66.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
-+|||+.||+|..++.++...+. ..+|+++|+++..++.. +...++.+++.|+...... ...+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~g---a~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-------~~~~f 115 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEG---VREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY-------RNRKF 115 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCC---CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-------hCCCC
Confidence 58999999999999999987421 35899999999885431 1123567777776544211 13579
Q ss_pred cEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 115 SVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 115 D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
|+|..|+. | . ...+++.+.+ .+++||.|.++
T Consensus 116 DvIdlDPf----G--s---------~~~fld~al~------------------~~~~~glL~vT 146 (374)
T TIGR00308 116 HVIDIDPF----G--T---------PAPFVDSAIQ------------------ASAERGLLLVT 146 (374)
T ss_pred CEEEeCCC----C--C---------cHHHHHHHHH------------------hcccCCEEEEE
Confidence 99999862 1 1 1146666666 78999999987
No 224
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.81 E-value=0.00021 Score=61.45 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=52.4
Q ss_pred hhhhhHHhHHH--HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----c-CCCCCeE
Q 038391 19 YVARSAFKLLQ--IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----L-HCDARVQ 90 (186)
Q Consensus 19 y~~r~~~~l~~--~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~-~~~~~~~ 90 (186)
|-.|....+++ .......+.++..|+|+|||+|..+..+.+.+.......+.+++|||..++.. . ...+.+.
T Consensus 54 Yptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~ 133 (319)
T TIGR03439 54 YLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVR 133 (319)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeE
Confidence 44555444443 11222236778899999999999999999887532123579999999988654 1 2223444
Q ss_pred E--EEeeecCC
Q 038391 91 T--VSADVINL 99 (186)
Q Consensus 91 ~--~~~d~~~~ 99 (186)
+ +.+|+.+.
T Consensus 134 v~~l~gdy~~~ 144 (319)
T TIGR03439 134 CAGLLGTYDDG 144 (319)
T ss_pred EEEEEecHHHH
Confidence 4 67877653
No 225
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00012 Score=64.03 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=84.1
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCC----------------------------C-------eEE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNG----------------------------G-------SVV 71 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~----------------------------~-------~v~ 71 (186)
|...+......+++..++|--||+|.+.+..+....+--|| . .++
T Consensus 179 LAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 179 LAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 55555555556778899999999999999998874210000 1 378
Q ss_pred EEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHH
Q 038391 72 GIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAV 144 (186)
Q Consensus 72 gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~ 144 (186)
|+|+++.+++. +.....++|.++|+..+..+ -+.+|+||||+| -|....+...-..+-..+-
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPP---YGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPP---YGERLGSEALVAKLYREFG 327 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCC---cchhcCChhhHHHHHHHHH
Confidence 99999999765 34556799999999877532 268999999986 3444444322233555666
Q ss_pred HHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 145 DLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+.+ .++.-+.+|+..
T Consensus 328 ~~lk~------------------~~~~ws~~v~tt 344 (381)
T COG0116 328 RTLKR------------------LLAGWSRYVFTT 344 (381)
T ss_pred HHHHH------------------HhcCCceEEEEc
Confidence 66655 666666666653
No 226
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.76 E-value=5.8e-05 Score=68.71 Aligned_cols=81 Identities=7% Similarity=0.146 Sum_probs=49.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCC----CCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLD----NGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~----~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
...+|||.|||+|.++..++..+.... -...++|+|+++..+..+ .......+...|......... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~---~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNI---E 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccc---c
Confidence 356899999999999999998764210 025799999999885431 111123444444332211000 0
Q ss_pred CCCCCccEEEeCCC
Q 038391 109 PKQKGFSVILSDMC 122 (186)
Q Consensus 109 ~~~~~~D~V~~d~~ 122 (186)
...++||+|++|+|
T Consensus 108 ~~~~~fD~IIgNPP 121 (524)
T TIGR02987 108 SYLDLFDIVITNPP 121 (524)
T ss_pred cccCcccEEEeCCC
Confidence 01358999999986
No 227
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00015 Score=60.71 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=68.2
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCC
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLP 100 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~ 100 (186)
+.++.....++||.+|++-|+|+|.++.++++.+++ -++++.+|+.+..-.+ +....++++.+-|+....
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~p---tGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAP---TGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCc---CcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 444555555899999999999999999999999886 6999999998877433 345678999999987654
Q ss_pred hhhHhhhCCCCCCccEEEeCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
+.. ....+|.|+.|++
T Consensus 171 F~~------ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 171 FLI------KSLKADAVFLDLP 186 (314)
T ss_pred ccc------cccccceEEEcCC
Confidence 321 3568999999986
No 228
>PRK00536 speE spermidine synthase; Provisional
Probab=97.75 E-value=7.7e-05 Score=62.42 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=66.7
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
+..++||=+|-|-|+..+.++++ ..+|+.|||+++.++. ...++|++++.. + . +.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh------~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~---~-----~~ 135 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY------DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L---L-----DL 135 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc------CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h---h-----hc
Confidence 45689999999999999999998 2499999999988643 234567777641 1 0 00
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
..++||+||+|..+ ...+.+.+.+ .|+|||.++.+
T Consensus 136 --~~~~fDVIIvDs~~----------------~~~fy~~~~~------------------~L~~~Gi~v~Q 170 (262)
T PRK00536 136 --DIKKYDLIICLQEP----------------DIHKIDGLKR------------------MLKEDGVFISV 170 (262)
T ss_pred --cCCcCCEEEEcCCC----------------ChHHHHHHHH------------------hcCCCcEEEEC
Confidence 23689999998531 1356667777 99999999985
No 229
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.74 E-value=1.6e-05 Score=64.50 Aligned_cols=100 Identities=14% Similarity=0.095 Sum_probs=61.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-----CCCC-eEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-----CDAR-VQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-----~~~~-~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..+.||.|||-|..|..+...+. .+|-.||..+..+..+. ...+ .++.+.-+. +|....++
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f-----~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ--------~f~P~~~~ 122 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVF-----DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQ--------DFTPEEGK 122 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC------SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GG--------G----TT-
T ss_pred cceEEecccccchhHHHHHHHhc-----CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHh--------hccCCCCc
Confidence 46899999999999987765432 58999999998876532 1112 233333222 33323479
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|++ .|-.-+....+ ...++..+.. .|+|+|.+|||-
T Consensus 123 YDlIW~--------QW~lghLTD~d-lv~fL~RCk~------------------~L~~~G~IvvKE 161 (218)
T PF05891_consen 123 YDLIWI--------QWCLGHLTDED-LVAFLKRCKQ------------------ALKPNGVIVVKE 161 (218)
T ss_dssp EEEEEE--------ES-GGGS-HHH-HHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred EeEEEe--------hHhhccCCHHH-HHHHHHHHHH------------------hCcCCcEEEEEe
Confidence 999999 45444433334 4467777776 899999999984
No 230
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.70 E-value=6.6e-05 Score=62.53 Aligned_cols=75 Identities=15% Similarity=0.349 Sum_probs=58.0
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+.++..|||+|+|+|.+|..+++. +.+|+++|+++.+... .....+++++.+|+........ ..+
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~------~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~-----~~~ 96 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKR------GKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL-----LKN 96 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHH------SSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH-----CSS
T ss_pred CCCCCEEEEeCCCCccchhhHhcc------cCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh-----hcC
Confidence 458899999999999999999998 4799999999988543 2246789999999988765421 134
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
....|++|.+
T Consensus 97 ~~~~vv~NlP 106 (262)
T PF00398_consen 97 QPLLVVGNLP 106 (262)
T ss_dssp SEEEEEEEET
T ss_pred CceEEEEEec
Confidence 6678888764
No 231
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.58 E-value=0.00016 Score=61.80 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=63.8
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCCh
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPS 101 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~ 101 (186)
+.+++..+. ++++..++|..+|.|+.+..+++.++ .++|+|+|.++.++..+ ....+++++++++.++..
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~----~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~ 83 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLG----TGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFE 83 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCC----CCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHH
Confidence 334555543 57788999999999999999999875 38999999999987542 223589999998877542
Q ss_pred hhHhhhCCCCCCccEEEeCC
Q 038391 102 NQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~ 121 (186)
.+... ...++|.|+.|.
T Consensus 84 -~l~~~--~~~~vDgIl~DL 100 (305)
T TIGR00006 84 -HLDEL--LVTKIDGILVDL 100 (305)
T ss_pred -HHHhc--CCCcccEEEEec
Confidence 22222 135799999975
No 232
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.57 E-value=0.00016 Score=62.49 Aligned_cols=80 Identities=26% Similarity=0.342 Sum_probs=60.3
Q ss_pred HHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-Cc-------------C-CCCCeEEEEe
Q 038391 30 IQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-SL-------------H-CDARVQTVSA 94 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-~~-------------~-~~~~~~~~~~ 94 (186)
+......+++|+.|+|--.|||.+....+.. |+.|+|-||+-.++. .+ . ...-+.++.+
T Consensus 199 i~AN~Amv~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~ 272 (421)
T KOG2671|consen 199 IMANQAMVKPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA 272 (421)
T ss_pred HHhhhhccCCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence 3444445799999999999999998877776 789999999998876 21 1 1223667788
Q ss_pred eecCCChhhHhhhCCCCCCccEEEeCCC
Q 038391 95 DVINLPSNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 95 d~~~~~~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
|+++.+..+ .-.||.|+||++
T Consensus 273 D~sn~~~rs-------n~~fDaIvcDPP 293 (421)
T KOG2671|consen 273 DFSNPPLRS-------NLKFDAIVCDPP 293 (421)
T ss_pred cccCcchhh-------cceeeEEEeCCC
Confidence 888876542 358999999985
No 233
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.54 E-value=0.00077 Score=57.29 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=64.7
Q ss_pred HHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCChhh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~~~ 103 (186)
|.+..+. ++++...+|..-|.|+.+..+...++. .++++|+|-++.+++.+ ....+++++++++.++...
T Consensus 14 E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~---~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~- 88 (314)
T COG0275 14 EVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPD---LGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEA- 88 (314)
T ss_pred HHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCC---CCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHH-
Confidence 3444433 678899999999999999999999875 57899999999997652 2356899999988775421
Q ss_pred HhhhCCCCCCccEEEeCC
Q 038391 104 VRALSPKQKGFSVILSDM 121 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~ 121 (186)
+... ..+++|.|+.|.
T Consensus 89 l~~~--~i~~vDGiL~DL 104 (314)
T COG0275 89 LKEL--GIGKVDGILLDL 104 (314)
T ss_pred HHhc--CCCceeEEEEec
Confidence 2222 246899998864
No 234
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.53 E-value=0.00022 Score=58.04 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=50.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
+.+++|+|+|.|.-+..++=.++ ..+|+-+|-...++.. .-.-.+++++++.+.+... ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p----~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~---------~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP----DLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ---------EKK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc----CCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc---------ccc
Confidence 58999999999999999985443 4779999999988544 1223568888887655532 123
Q ss_pred -ccEEEeCC
Q 038391 114 -FSVILSDM 121 (186)
Q Consensus 114 -~D~V~~d~ 121 (186)
||+|++.+
T Consensus 135 ~~D~vtsRA 143 (215)
T COG0357 135 QYDVVTSRA 143 (215)
T ss_pred cCcEEEeeh
Confidence 99999843
No 235
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.53 E-value=0.00032 Score=58.92 Aligned_cols=42 Identities=12% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCEEEEEcccCCh----HHHHHHHHhCC-CCCCCeEEEEeCCCCCCC
Q 038391 40 GSSVLDLGCAPGA----WLQVACQSLGP-LDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 40 ~~~vLDlGcG~G~----~~~~l~~~~~~-~~~~~~v~gvDis~~~i~ 81 (186)
.-+|+-.||++|. ++..+.+.++. .....+|+|.||+...|+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~ 143 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLE 143 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHH
Confidence 4589999999995 34444455531 112469999999997753
No 236
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.51 E-value=5.7e-05 Score=67.88 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=55.9
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCC---CCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVK---KVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis---~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
.+||+|||+|.|+.++.++ +..+..+-.. +..+..+.. ..+--+.+-+ ....++.+++.||+|.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r------~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~------~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER------NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVL------GSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEeccceeehhHHHHhhC------CceEEEcccccCCchhhhhhhh-cCcchhhhhh------ccccccCCccchhhhh
Confidence 6899999999999999997 3444443322 112211111 1111111111 1134445789999999
Q ss_pred eCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 119 SDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 119 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
|.-+ .-.|..+ ....+.+..| +|||||+++++..
T Consensus 187 csrc---~i~W~~~-------~g~~l~evdR------------------vLRpGGyfv~S~p 220 (506)
T PF03141_consen 187 CSRC---LIPWHPN-------DGFLLFEVDR------------------VLRPGGYFVLSGP 220 (506)
T ss_pred cccc---cccchhc-------ccceeehhhh------------------hhccCceEEecCC
Confidence 9543 1223222 1235566677 9999999998754
No 237
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00016 Score=65.20 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=54.6
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINL 99 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~ 99 (186)
+|...+.....++.++.+||++||+|.++..+++.+ .+|+||++++..++.+ +...+.+|+++-+.++
T Consensus 370 vLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 370 VLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 456666666667889999999999999999999985 7999999999998652 3446889998855443
No 238
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.43 E-value=0.00058 Score=48.15 Aligned_cols=99 Identities=31% Similarity=0.489 Sum_probs=61.3
Q ss_pred EEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC----CCC--eEEEEeeecC--CChhhHhhhCCCC-CC
Q 038391 43 VLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC----DAR--VQTVSADVIN--LPSNQVRALSPKQ-KG 113 (186)
Q Consensus 43 vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~----~~~--~~~~~~d~~~--~~~~~l~~~~~~~-~~ 113 (186)
++|+|||+|..+ .+...... +..++|+|+++.++..... ... +.+...+... .+. .. ..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 119 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGR---GAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPF--------EDSAS 119 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCC---CceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCC--------CCCCc
Confidence 999999999988 44444321 2489999999988654111 111 4666666554 221 12 47
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCC
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQ 183 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~ 183 (186)
||++.. .. ..+... ....+....+ .|+|+|.+++......
T Consensus 120 ~d~~~~-~~----~~~~~~-------~~~~~~~~~~------------------~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 120 FDLVIS-LL----VLHLLP-------PAKALRELLR------------------VLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeEEee-ee----ehhcCC-------HHHHHHHHHH------------------hcCCCcEEEEEeccCC
Confidence 999933 21 111111 3456666776 8999999998876543
No 239
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.43 E-value=0.00036 Score=59.82 Aligned_cols=108 Identities=23% Similarity=0.304 Sum_probs=69.8
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCC-CCeEEEEeeecCCChhhHhhhC---CC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCD-ARVQTVSADVINLPSNQVRALS---PK 110 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~-~~~~~~~~d~~~~~~~~l~~~~---~~ 110 (186)
.+++|.+||-+|||| |..+...++.++. .+|+.+|+.+.+++.++.. .....-..... ..+.+.+.. ..
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA----~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~--~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGA----SDVVITDLVANRLELAKKFGATVTDPSSHKS--SPQELAELVEKALG 239 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCC----CcEEEeecCHHHHHHHHHhCCeEEeeccccc--cHHHHHHHHHhhcc
Confidence 368899999999998 8888888999864 7999999999998775432 22211111111 122222221 11
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
...+|+.+. ++|. +..++.+.. .||+||++++..+-.+.
T Consensus 240 ~~~~d~~~d-----CsG~------------~~~~~aai~------------------a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 240 KKQPDVTFD-----CSGA------------EVTIRAAIK------------------ATRSGGTVVLVGMGAEE 278 (354)
T ss_pred ccCCCeEEE-----ccCc------------hHHHHHHHH------------------HhccCCEEEEeccCCCc
Confidence 245898886 3442 234444555 78999998888776554
No 240
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.42 E-value=0.00048 Score=60.12 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=75.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------------cCCCCCeEEEEeeecCCChhh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------------LHCDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------------~~~~~~~~~~~~d~~~~~~~~ 103 (186)
++...+||-+|-|-|--.+.+.+.-+ -.+++-||++|+|++. +..++|++.+..|+.+.-..
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~----~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~- 361 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQ----VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT- 361 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCC----cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-
Confidence 45568999999999999999988632 3699999999999754 22457888888877654222
Q ss_pred HhhhCCCCCCccEEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 104 VRALSPKQKGFSVILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
..+.||.||.|.+ |+....... -..++...+.+ .|+++|.+|++-
T Consensus 362 ------a~~~fD~vIVDl~DP~tps~~rl-------YS~eFY~ll~~------------------~l~e~Gl~VvQa 407 (508)
T COG4262 362 ------AADMFDVVIVDLPDPSTPSIGRL-------YSVEFYRLLSR------------------HLAETGLMVVQA 407 (508)
T ss_pred ------hcccccEEEEeCCCCCCcchhhh-------hhHHHHHHHHH------------------hcCcCceEEEec
Confidence 2569999999864 211111111 13356666676 899999999873
No 241
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.38 E-value=0.00035 Score=56.47 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=48.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---------------cCCCCCeEE
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---------------LHCDARVQT 91 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---------------~~~~~~~~~ 91 (186)
+..++.... ++++...+|||||.|.....++...+- .+++|||+.+..... .....++.+
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~----~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGC----KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCC----cEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 344455544 678899999999999998888877632 469999999976211 112356778
Q ss_pred EEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 92 VSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 92 ~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
.++|+.+... ...+ -...|+|++|-
T Consensus 106 ~~gdfl~~~~--~~~~---~s~AdvVf~Nn 130 (205)
T PF08123_consen 106 IHGDFLDPDF--VKDI---WSDADVVFVNN 130 (205)
T ss_dssp ECS-TTTHHH--HHHH---GHC-SEEEE--
T ss_pred eccCccccHh--Hhhh---hcCCCEEEEec
Confidence 8888775432 1111 13689999963
No 242
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.37 E-value=0.00033 Score=52.96 Aligned_cols=45 Identities=29% Similarity=0.305 Sum_probs=36.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+...|+|+|||.|+++..++..+++...+.+|+|||.++..+..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES 68 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence 567799999999999999999955433346899999999988644
No 243
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=97.36 E-value=0.0005 Score=62.43 Aligned_cols=152 Identities=18% Similarity=0.229 Sum_probs=96.2
Q ss_pred ChHHHHHHhhchhhhhHHhHHHHHHHcCCC------CCCCE-----------EEEEcccCChHHHHHHHHhCCCCCCCeE
Q 038391 8 DFFYREAQRLGYVARSAFKLLQIQKQYKLI------KPGSS-----------VLDLGCAPGAWLQVACQSLGPLDNGGSV 70 (186)
Q Consensus 8 ~~~~~~~~~~~y~~r~~~~l~~~~~~~~~~------~~~~~-----------vLDlGcG~G~~~~~l~~~~~~~~~~~~v 70 (186)
++|.-+ +-..|.+|++.|..++...+.++ +-|.. ..|+|+|||+++.++..+-. +.++-
T Consensus 220 NPyEtI-rs~fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~---w~AKG 295 (845)
T KOG3673|consen 220 NPYETI-RSAFFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKF---WNAKG 295 (845)
T ss_pred ChHHHH-HHHHHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhh---hcccc
Confidence 555333 34557889999888877776654 11222 13799999999999986522 13444
Q ss_pred EEEeCCCCC---CCC---c-CC-CC--CeEEEEeeecCCCh-hhHhhhC---CCCCCccEEEeCCCCCCCCCcccchHHH
Q 038391 71 VGIDVKKVK---VPS---L-HC-DA--RVQTVSADVINLPS-NQVRALS---PKQKGFSVILSDMCPSVSGITTKDAALS 136 (186)
Q Consensus 71 ~gvDis~~~---i~~---~-~~-~~--~~~~~~~d~~~~~~-~~l~~~~---~~~~~~D~V~~d~~~~~~~~~~~~~~~~ 136 (186)
+|+-+.-.. ++. + .. .. .-.--.+|+.++.. ..+.++. .++..+.+..+|+.++..|..++....+
T Consensus 296 FGfTL~G~nDFKLekF~aaS~e~FetfYG~k~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEILS 375 (845)
T KOG3673|consen 296 FGFTLAGKNDFKLEKFTAASQEFFETFYGTKDDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEILS 375 (845)
T ss_pred ceeEeccCCccchhhhhhcCHHhhhccccccCCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHHHH
Confidence 554433221 221 0 00 00 00001234444321 1222221 2345788899999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 137 VELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++..+-+..+.. ++++||.+++|+|.
T Consensus 376 KqLyLCQfL~aL~------------------IvR~gG~F~CK~FD 402 (845)
T KOG3673|consen 376 KQLYLCQFLVALC------------------IVREGGNFFCKLFD 402 (845)
T ss_pred HHHHHHHHHHHhe------------------eeecCCeEEEeeec
Confidence 9999988888888 99999999999985
No 244
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.31 E-value=0.00082 Score=54.62 Aligned_cols=128 Identities=18% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCChHHHHHHhhchhhh---hHHhHHHHHHHcCCCCCC----CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCC
Q 038391 6 APDFFYREAQRLGYVAR---SAFKLLQIQKQYKLIKPG----SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKV 78 (186)
Q Consensus 6 ~~~~~~~~~~~~~y~~r---~~~~l~~~~~~~~~~~~~----~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~ 78 (186)
-.+.|..++....-..| +...+++.+.....-.+. -++||+||=+......-... -.|+.||+.+.
T Consensus 11 Gl~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~-------fdvt~IDLns~ 83 (219)
T PF11968_consen 11 GLEAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW-------FDVTRIDLNSQ 83 (219)
T ss_pred CHHHHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc-------eeeEEeecCCC
Confidence 34567666665444444 444566655554432222 48999999765544333333 47999999984
Q ss_pred CCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCC
Q 038391 79 KVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVN 158 (186)
Q Consensus 79 ~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
- -.+.+.|+.+.+.+.- +.++||+|.+.. .....+++.. .-..+..+.+
T Consensus 84 ~---------~~I~qqDFm~rplp~~-----~~e~FdvIs~SL----VLNfVP~p~~----RG~Ml~r~~~--------- 132 (219)
T PF11968_consen 84 H---------PGILQQDFMERPLPKN-----ESEKFDVISLSL----VLNFVPDPKQ----RGEMLRRAHK--------- 132 (219)
T ss_pred C---------CCceeeccccCCCCCC-----cccceeEEEEEE----EEeeCCCHHH----HHHHHHHHHH---------
Confidence 4 3355677776543211 367999998843 1222333322 3345555555
Q ss_pred CCCCCCCCcccccCcE-----EEEEEc
Q 038391 159 NSDSSTDSGVLKPGGH-----LVIKLL 180 (186)
Q Consensus 159 ~~~~~~~~~~LkpgG~-----lvi~~~ 180 (186)
+|+|+|. |+|.+-
T Consensus 133 ---------fL~~~g~~~~~~LFlVlP 150 (219)
T PF11968_consen 133 ---------FLKPPGLSLFPSLFLVLP 150 (219)
T ss_pred ---------HhCCCCccCcceEEEEeC
Confidence 9999999 777653
No 245
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.29 E-value=0.00025 Score=56.71 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=50.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
..+.|+|+|+|.++...+.. .-+|++|+..|..... -....+++.+.+|++...+ ...
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~------A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f----------e~A 97 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA------AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF----------ENA 97 (252)
T ss_pred hceeeccCCcchHHHHHHhh------hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc----------ccc
Confidence 58999999999888777776 3699999999976322 1234689999999987754 367
Q ss_pred cEEEeCC
Q 038391 115 SVILSDM 121 (186)
Q Consensus 115 D~V~~d~ 121 (186)
|+|+|-|
T Consensus 98 DvvicEm 104 (252)
T COG4076 98 DVVICEM 104 (252)
T ss_pred ceeHHHH
Confidence 9999965
No 246
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.29 E-value=0.00018 Score=54.77 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=55.4
Q ss_pred eEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHH
Q 038391 69 SVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGM 141 (186)
Q Consensus 69 ~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~ 141 (186)
+|+|+||+++++.. .....++++++..-.++. +.. +.+++|.++.|...-..|.+.+ ....+-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~-----~~i-~~~~v~~~iFNLGYLPggDk~i--~T~~~TTl 72 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLD-----EYI-PEGPVDAAIFNLGYLPGGDKSI--TTKPETTL 72 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGG-----GT---S--EEEEEEEESB-CTS-TTS--B--HHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHH-----hhC-ccCCcCEEEEECCcCCCCCCCC--CcCcHHHH
Confidence 69999999999754 334457888877554433 222 2258999999876545555443 23344466
Q ss_pred HHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 142 RAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
.+++.+.. +|+|||.++|.++.|-+
T Consensus 73 ~Al~~al~------------------lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 73 KALEAALE------------------LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHH------------------HEEEEEEEEEEE--STC
T ss_pred HHHHHHHH------------------hhccCCEEEEEEeCCCC
Confidence 77777777 99999999999998743
No 247
>PRK10742 putative methyltransferase; Provisional
Probab=97.29 E-value=0.00036 Score=57.90 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCCC--EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------c------CC--CCCeEEEEeeecCC
Q 038391 37 IKPGS--SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------L------HC--DARVQTVSADVINL 99 (186)
Q Consensus 37 ~~~~~--~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~------~~--~~~~~~~~~d~~~~ 99 (186)
+++|. +|||+.+|.|..+..++.+ |++|+++|-++..... . .. ..+++++++|....
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~ 157 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH
Confidence 57777 8999999999999999998 6789999999977211 1 11 14677777776543
Q ss_pred ChhhHhhhCCCCCCccEEEeCCCCC
Q 038391 100 PSNQVRALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 100 ~~~~l~~~~~~~~~~D~V~~d~~~~ 124 (186)
+... ..+||+|+.|++++
T Consensus 158 ----L~~~---~~~fDVVYlDPMfp 175 (250)
T PRK10742 158 ----LTDI---TPRPQVVYLDPMFP 175 (250)
T ss_pred ----HhhC---CCCCcEEEECCCCC
Confidence 2221 34799999998643
No 248
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.16 E-value=0.0011 Score=53.23 Aligned_cols=43 Identities=26% Similarity=0.474 Sum_probs=36.7
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
|..+++|.+|+|+=.|.|+||..++..+++ .+.|+++=..+..
T Consensus 43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp---~G~Vy~~~p~e~~ 85 (238)
T COG4798 43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGP---KGKVYAYVPAELT 85 (238)
T ss_pred EeccCCCCEEEEEecCCccHhhhhchhcCC---ceeEEEecchhhc
Confidence 445799999999999999999999999987 6799998665553
No 249
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.15 E-value=0.0013 Score=55.34 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=32.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
+...+||--|||-|.++..++.+ |-.|.|.|.|-.|
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~M 90 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFM 90 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHH
Confidence 33568999999999999999998 6799999999977
No 250
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.12 E-value=0.0016 Score=54.81 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
|.|+......++| .+|||+|||+|.-+..+.+.++. -.+++++|.|+.|+..
T Consensus 22 l~El~~r~p~f~P-~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l 73 (274)
T PF09243_consen 22 LSELRKRLPDFRP-RSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLEL 73 (274)
T ss_pred HHHHHHhCcCCCC-ceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHH
Confidence 4445444433333 48999999999888888888763 4689999999999653
No 251
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.10 E-value=0.00049 Score=56.17 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=54.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
....|+|..||.|+.++.++.+ +..|++||++|..|.- ..-..+++|+++|+.++... + .+ ..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~-l-q~--~K 163 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASK-L-KA--DK 163 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHH-H-hh--hh
Confidence 4568999999999999999988 5799999999988643 22345999999998765321 1 00 13
Q ss_pred CCccEEEeCCCC
Q 038391 112 KGFSVILSDMCP 123 (186)
Q Consensus 112 ~~~D~V~~d~~~ 123 (186)
..+|+|+..+++
T Consensus 164 ~~~~~vf~sppw 175 (263)
T KOG2730|consen 164 IKYDCVFLSPPW 175 (263)
T ss_pred heeeeeecCCCC
Confidence 356677765543
No 252
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.07 E-value=0.0019 Score=54.19 Aligned_cols=114 Identities=23% Similarity=0.231 Sum_probs=63.9
Q ss_pred CEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCC--CeEEEEeeecCCC----hhhHhhhC
Q 038391 41 SSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDA--RVQTVSADVINLP----SNQVRALS 108 (186)
Q Consensus 41 ~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~--~~~~~~~d~~~~~----~~~l~~~~ 108 (186)
.+.|||||| +-..+-.+++...+ .++|+-+|+.|..+... .... +..++++|+.+.. ...+.++.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P---~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAP---DARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-T---T-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCC---CceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence 689999999 34567778887654 79999999999775431 1223 4889999998753 12344455
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
..++.+-+++.. ..++..+... ....+..... .|.||.+|+|+++..+.
T Consensus 147 D~~rPVavll~~-----vLh~v~D~~d----p~~iv~~l~d------------------~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 147 DFDRPVAVLLVA-----VLHFVPDDDD----PAGIVARLRD------------------ALAPGSYLAISHATDDG 195 (267)
T ss_dssp -TTS--EEEECT------GGGS-CGCT----HHHHHHHHHC------------------CS-TT-EEEEEEEB-TT
T ss_pred CCCCCeeeeeee-----eeccCCCccC----HHHHHHHHHH------------------hCCCCceEEEEecCCCC
Confidence 556667677662 2233333222 4456666666 89999999999998764
No 253
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.07 E-value=0.0047 Score=52.09 Aligned_cols=103 Identities=23% Similarity=0.344 Sum_probs=54.9
Q ss_pred CEEEEEcccCChHH-HHHHHHhCCCCCCCeEEEEeCCCCCCCC--------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 41 SSVLDLGCAPGAWL-QVACQSLGPLDNGGSVVGIDVKKVKVPS--------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 41 ~~vLDlGcG~G~~~-~~l~~~~~~~~~~~~v~gvDis~~~i~~--------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+|+=+||||==+| +.+++..+. +..|+++|+++..+.. .....+++|+.+|..+.... -
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~---~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d--------l 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGP---GARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD--------L 190 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT-----EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG---------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc--------c
Confidence 59999999996555 455555433 5789999999988543 13467899999998765432 2
Q ss_pred CCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 112 KGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 112 ~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
..||+|+... ...++.+. ....+....+ .++||..+++..-+|
T Consensus 191 ~~~DvV~lAa------lVg~~~e~----K~~Il~~l~~------------------~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 191 KEYDVVFLAA------LVGMDAEP----KEEILEHLAK------------------HMAPGARLVVRSAHG 233 (276)
T ss_dssp ---SEEEE-T------T-S----S----HHHHHHHHHH------------------HS-TTSEEEEEE--G
T ss_pred ccCCEEEEhh------hcccccch----HHHHHHHHHh------------------hCCCCcEEEEecchh
Confidence 5899998732 33333222 4455666655 788999988875443
No 254
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.06 E-value=0.0022 Score=55.62 Aligned_cols=108 Identities=22% Similarity=0.383 Sum_probs=68.3
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
.+++.+|+-+|||+ |.++..+++.++. .+|+.+|.++.+++.+........+...-.+.....+.... .+..+|
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga----~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t-~g~g~D 240 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGA----SVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELT-GGRGAD 240 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHh-CCCCCC
Confidence 34555999999999 7777888888754 79999999999987653311111111111101111122222 245799
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
+++- +.| . ..++..+.+ .++|||++++.-+.+.+
T Consensus 241 ~vie-----~~G--~----------~~~~~~ai~------------------~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 241 VVIE-----AVG--S----------PPALDQALE------------------ALRPGGTVVVVGVYGGE 274 (350)
T ss_pred EEEE-----CCC--C----------HHHHHHHHH------------------HhcCCCEEEEEeccCCc
Confidence 9987 344 1 135666666 89999999988877654
No 255
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.03 E-value=0.003 Score=53.05 Aligned_cols=87 Identities=23% Similarity=0.383 Sum_probs=65.1
Q ss_pred hhhhHHhHHHHHHHcCC-------CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEE
Q 038391 20 VARSAFKLLQIQKQYKL-------IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTV 92 (186)
Q Consensus 20 ~~r~~~~l~~~~~~~~~-------~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~ 92 (186)
-+|+..||.|....|.. +.+|...+|+|+.||+||-.+.++ +..|++||.-+-. +.-.....++-.
T Consensus 185 PSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr------~m~V~aVDng~ma-~sL~dtg~v~h~ 257 (358)
T COG2933 185 PSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR------NMRVYAVDNGPMA-QSLMDTGQVTHL 257 (358)
T ss_pred CchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc------ceEEEEeccchhh-hhhhcccceeee
Confidence 47888888887766543 477889999999999999999998 6899999976644 222333456666
Q ss_pred EeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 93 SADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 93 ~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
..|-....+. ...+|..+|||
T Consensus 258 r~DGfk~~P~--------r~~idWmVCDm 278 (358)
T COG2933 258 REDGFKFRPT--------RSNIDWMVCDM 278 (358)
T ss_pred eccCcccccC--------CCCCceEEeeh
Confidence 6776555421 46899999998
No 256
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.91 E-value=0.00052 Score=60.00 Aligned_cols=104 Identities=25% Similarity=0.239 Sum_probs=74.6
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
..+++..++|+|||-|....++...- +..++|+|.++..+.. ........+...|+-..++
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~-----~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------- 174 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFK-----KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------- 174 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhc-----cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-------
Confidence 35778899999999999999999873 5799999999977533 1222334445566655543
Q ss_pred CCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 109 PKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 109 ~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.++.||.+.+.- .+.+..+ ...+..+..+ ++||||.++++.|.
T Consensus 175 -edn~fd~v~~ld----~~~~~~~-------~~~~y~Ei~r------------------v~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 175 -EDNTFDGVRFLE----VVCHAPD-------LEKVYAEIYR------------------VLKPGGLFIVKEWI 217 (364)
T ss_pred -CccccCcEEEEe----ecccCCc-------HHHHHHHHhc------------------ccCCCceEEeHHHH
Confidence 367899986632 2334444 5678889998 99999999987654
No 257
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.88 E-value=0.0012 Score=49.17 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=39.7
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVIN 98 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~ 98 (186)
.+||+|||.|.++..+++..+ +.+|+++|.++.+... .+...++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~----~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA----EGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC----CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998753 4699999999988543 1112357777766654
No 258
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.76 E-value=0.004 Score=56.49 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=53.6
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhH
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQV 104 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l 104 (186)
.+.....+..+|+|.+||+|++.....+.++..+....++|.|+.+..... +.....+....+|-..-+...
T Consensus 179 v~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~- 257 (489)
T COG0286 179 VELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHD- 257 (489)
T ss_pred HHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCccc-
Confidence 333334677799999999999999999888642112679999998866322 111112233333322211100
Q ss_pred hhhCCCCCCccEEEeCCCCC
Q 038391 105 RALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 105 ~~~~~~~~~~D~V~~d~~~~ 124 (186)
. ....+.||.|++|++.+
T Consensus 258 -~-~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 258 -D-KDDKGKFDFVIANPPFS 275 (489)
T ss_pred -c-cCCccceeEEEeCCCCC
Confidence 0 01236799999998755
No 259
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.72 E-value=0.0047 Score=53.40 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=70.9
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-cCCC-CCeEEEEeeecCCChhhHhhhCC
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-LHCD-ARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-~~~~-~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
..+..++.-...+|+|.|.|..+..+...+ .+|-++++....+.. +... ..+..+-+|+....
T Consensus 170 ~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f------p~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~--------- 234 (342)
T KOG3178|consen 170 EVYTGFKGVNVAVDVGGGIGRVLKNLLSKY------PHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDT--------- 234 (342)
T ss_pred hhhcccccCceEEEcCCcHhHHHHHHHHhC------CCCceeecCHHHHHhhhhhhcCCcceecccccccC---------
Confidence 333334445789999999999999999976 458888887766543 2222 55788888876432
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
| +-|+|+.-. +.+.|.- +-+...++.+++ .|+|||.++++--
T Consensus 235 P--~~daI~mkW---iLhdwtD------edcvkiLknC~~------------------sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 235 P--KGDAIWMKW---ILHDWTD------EDCVKILKNCKK------------------SLPPGGKIIVVEN 276 (342)
T ss_pred C--CcCeEEEEe---ecccCCh------HHHHHHHHHHHH------------------hCCCCCEEEEEec
Confidence 1 346887722 2223322 236688888888 9999999998754
No 260
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.69 E-value=0.0027 Score=54.35 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=57.7
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS 101 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~ 101 (186)
+-|.+..+. ++++...+|..-|.|+.+..+.+.++ .++|+|+|-++.++.. .....++.++++++.++..
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~----~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~ 83 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP----NGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDE 83 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T----T-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHH
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC----CCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHH
Confidence 334445444 67788999999999999999999986 3899999999999743 2235789999999987643
Q ss_pred hhHhhhCCCCCCccEEEeCC
Q 038391 102 NQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 102 ~~l~~~~~~~~~~D~V~~d~ 121 (186)
. +.... ...++|.|+.|.
T Consensus 84 ~-l~~~~-~~~~~dgiL~DL 101 (310)
T PF01795_consen 84 Y-LKELN-GINKVDGILFDL 101 (310)
T ss_dssp H-HHHTT-TTS-EEEEEEE-
T ss_pred H-HHHcc-CCCccCEEEEcc
Confidence 2 22221 236899999975
No 261
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.43 E-value=0.0072 Score=52.40 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=63.2
Q ss_pred CCCCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
++||++|+-+|+| .|..+..+++.+ +.+|+++|.++...+.+.....-.++... .......+ .+.||
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~------~~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAV------KEIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHh------HhhCc
Confidence 6889999999888 245666777766 58999999999987654333333344332 11111111 22499
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+|+.- .+ . ..+....+ .||+||++++.-+.+
T Consensus 232 ~ii~t-----v~----~---------~~~~~~l~------------------~l~~~G~~v~vG~~~ 262 (339)
T COG1064 232 AIIDT-----VG----P---------ATLEPSLK------------------ALRRGGTLVLVGLPG 262 (339)
T ss_pred EEEEC-----CC----h---------hhHHHHHH------------------HHhcCCEEEEECCCC
Confidence 99872 12 1 24444555 899999999988774
No 262
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.40 E-value=0.0075 Score=48.51 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=47.7
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.-.|++|||+|+|+|.-++..+.. +...|+..|+.+..+.. ..+.-.+.+...|+.. + .
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~a-----GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----------~ 140 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARA-----GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----------P 140 (218)
T ss_pred ccccceeeecccccChHHHHHHHh-----hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C----------C
Confidence 344899999999999877777765 24689999999876443 2233456666666543 1 4
Q ss_pred CCccEEEe
Q 038391 112 KGFSVILS 119 (186)
Q Consensus 112 ~~~D~V~~ 119 (186)
..||++++
T Consensus 141 ~~~Dl~La 148 (218)
T COG3897 141 PAFDLLLA 148 (218)
T ss_pred cceeEEEe
Confidence 58999987
No 263
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=0.0048 Score=54.05 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=63.1
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCC-hhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLP-SNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~-~~~l~~~~~~ 110 (186)
.+|.+|+|.||.+|..|++++..+.+ .++++|+|.++..... ......+..+.+|+.+.. +..
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n---~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~------- 281 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRN---QGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEK------- 281 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhc---cCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCccc-------
Confidence 66899999999999999999999986 6899999999987432 112223444467777642 111
Q ss_pred CCCccEEEeCCCCCCCCCcccc
Q 038391 111 QKGFSVILSDMCPSVSGITTKD 132 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~ 132 (186)
=..+-.|++|.+|+.+|++...
T Consensus 282 ~~~v~~iL~DpscSgSgm~~r~ 303 (413)
T KOG2360|consen 282 FRDVTYILVDPSCSGSGMVSRQ 303 (413)
T ss_pred ccceeEEEeCCCCCCCccccce
Confidence 2467789999999999887553
No 264
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.06 E-value=0.0088 Score=50.21 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=49.3
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
+++|+.||.|+++..+.+. + -..|+++|+++..++... .... ..+.+|+.+.....+ ...+|+++.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G----~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~------~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G----FEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDF------IPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C----CEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhc------CCCCCEEEeC
Confidence 6899999999999888775 1 236899999998865421 1112 256678776653321 2479999998
Q ss_pred CCCC
Q 038391 121 MCPS 124 (186)
Q Consensus 121 ~~~~ 124 (186)
.+|.
T Consensus 70 pPCq 73 (275)
T cd00315 70 FPCQ 73 (275)
T ss_pred CCCh
Confidence 8764
No 265
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.05 E-value=0.014 Score=49.80 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=40.4
Q ss_pred CCEEEEEcccCChH-HHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------c-CCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAW-LQVACQSLGPLDNGGSVVGIDVKKVKVPS-------L-HCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~-~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~-~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
.-++||+|||.-.+ .+.-++.+ +.+++|.||++..++. + .+..++++++..-...- +......
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-----~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i---~~~i~~~ 174 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-----GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNI---FDGIIQP 174 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH-------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SS---TTTSTT-
T ss_pred ceEeecCCccHHHHHHHHhhhhc-----CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcccc---chhhhcc
Confidence 45899999998755 45555554 4799999999988643 3 56678888765322111 1122223
Q ss_pred CCCccEEEeCCCC
Q 038391 111 QKGFSVILSDMCP 123 (186)
Q Consensus 111 ~~~~D~V~~d~~~ 123 (186)
.+.||+..||+++
T Consensus 175 ~e~~dftmCNPPF 187 (299)
T PF05971_consen 175 NERFDFTMCNPPF 187 (299)
T ss_dssp -S-EEEEEE----
T ss_pred cceeeEEecCCcc
Confidence 5689999999864
No 266
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.0056 Score=53.32 Aligned_cols=49 Identities=27% Similarity=0.280 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
|-++...-..+.+. +|||+|.|||.-...+-+.++. =.+++.++.|+..
T Consensus 102 L~~L~~~~~dfapq-siLDvG~GPgtgl~A~n~i~Pd---l~sa~ile~sp~l 150 (484)
T COG5459 102 LDELQKRVPDFAPQ-SILDVGAGPGTGLWALNDIWPD---LKSAVILEASPAL 150 (484)
T ss_pred HHHHHHhCCCcCcc-hhhccCCCCchhhhhhcccCCC---chhhhhhccCHHH
Confidence 44455544444444 6999999999877777777754 2467777777654
No 267
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.93 E-value=0.0016 Score=54.32 Aligned_cols=111 Identities=23% Similarity=0.338 Sum_probs=58.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-------C------------------cC---------
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-------S------------------LH--------- 84 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-------~------------------~~--------- 84 (186)
+|.++||+||||-.+-..-+..+ -.+++..|+++.... . ..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~-----f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW-----FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT-----EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh-----hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 46799999999965533333222 147999999985521 0 00
Q ss_pred CCCCeE-EEEeeecCCChhhHhh-hCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCC
Q 038391 85 CDARVQ-TVSADVINLPSNQVRA-LSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDS 162 (186)
Q Consensus 85 ~~~~~~-~~~~d~~~~~~~~l~~-~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
....++ ++..|+....+ +.. .. ...+||+|++-.+ .-....+ .+.-..++.....
T Consensus 131 lR~~Vk~Vv~cDV~~~~p--l~~~~~-~p~~~D~v~s~fc---LE~a~~d----~~~y~~al~ni~~------------- 187 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNP--LDPPVV-LPPKFDCVISSFC---LESACKD----LDEYRRALRNISS------------- 187 (256)
T ss_dssp HHHHEEEEEE--TTSSST--TTTS-S-S-SSEEEEEEESS---HHHH-SS----HHHHHHHHHHHHT-------------
T ss_pred HHHhhceEEEeeccCCCC--CCcccc-CccchhhhhhhHH---HHHHcCC----HHHHHHHHHHHHH-------------
Confidence 001122 55677765432 111 11 1235999988432 0001111 2335577777777
Q ss_pred CCCCcccccCcEEEEEEccC
Q 038391 163 STDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 163 ~~~~~~LkpgG~lvi~~~~~ 182 (186)
+|||||.|++...-+
T Consensus 188 -----lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 188 -----LLKPGGHLILAGVLG 202 (256)
T ss_dssp -----TEEEEEEEEEEEESS
T ss_pred -----HcCCCcEEEEEEEcC
Confidence 999999999876544
No 268
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=95.57 E-value=0.076 Score=47.92 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=73.6
Q ss_pred CCCCC-EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 37 IKPGS-SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 37 ~~~~~-~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
+++-. ++|-+|||.-.++..+.+- +--.|+.+|+|+..++. +....-..+...|+....+ +
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~-----G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~f--------e 111 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKN-----GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVF--------E 111 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhc-----CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccC--------C
Confidence 35555 9999999999888888775 23479999999987543 2344567777888877654 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEc
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLL 180 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~ 180 (186)
+.+||+|+.-+..+........ ..........+.+..+ +|++||+++.-++
T Consensus 112 dESFdiVIdkGtlDal~~de~a-~~~~~~v~~~~~eVsr------------------vl~~~gk~~svtl 162 (482)
T KOG2352|consen 112 DESFDIVIDKGTLDALFEDEDA-LLNTAHVSNMLDEVSR------------------VLAPGGKYISVTL 162 (482)
T ss_pred CcceeEEEecCccccccCCchh-hhhhHHhhHHHhhHHH------------------HhccCCEEEEEEe
Confidence 6899999874421111111111 0101234566667776 9999999887665
No 269
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.51 E-value=0.0058 Score=50.34 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=44.4
Q ss_pred CCCCC--CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC-------C--cC------CCCCeEEEEeeecC
Q 038391 36 LIKPG--SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP-------S--LH------CDARVQTVSADVIN 98 (186)
Q Consensus 36 ~~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~-------~--~~------~~~~~~~~~~d~~~ 98 (186)
.++++ .+|||..+|-|.-+..++.. |++|+++|-+|..-. . .. ...+++++++|..+
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred CCCCCCCCEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 35665 48999999999999999975 579999999997611 1 11 12479999998776
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCC
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCP 123 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~ 123 (186)
.-.. +..+||+|..|+.+
T Consensus 144 ~L~~-------~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 144 YLRQ-------PDNSFDVVYFDPMF 161 (234)
T ss_dssp HCCC-------HSS--SEEEE--S-
T ss_pred HHhh-------cCCCCCEEEECCCC
Confidence 4221 36799999999643
No 270
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.44 E-value=0.0014 Score=53.21 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
..++||+|+|.|-+|..++..+ .+|++.|.|..|...
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f------eevyATElS~tMr~r 149 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF------EEVYATELSWTMRDR 149 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH------HHHHHHHhhHHHHHH
Confidence 4689999999999999999887 579999999999543
No 271
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.34 E-value=0.0045 Score=51.95 Aligned_cols=95 Identities=9% Similarity=0.059 Sum_probs=57.2
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
+++|+.||.|++..-+-+.- --.|+++|+++....-....-. ....+|+.......+ +. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-----~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l-----~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-----FEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDL-----PK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-----EEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHH-----HH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC-----cEEEEEeecCHHHHHhhhhccc-ccccccccccccccc-----cc-cceEEEecc
Confidence 68999999999999998871 1369999999998654211111 777889988865544 22 599999987
Q ss_pred CCCCCCCcc---cchHHHHHHHHHHHHHHc
Q 038391 122 CPSVSGITT---KDAALSVELGMRAVDLAL 148 (186)
Q Consensus 122 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 148 (186)
+|..-.... ........+....++.+.
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~ 99 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVK 99 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHH
T ss_pred CCceEeccccccccccccchhhHHHHHHHh
Confidence 664322211 111122245556666555
No 272
>PRK11524 putative methyltransferase; Provisional
Probab=95.34 E-value=0.028 Score=47.29 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=42.9
Q ss_pred CeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCc-----ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCC
Q 038391 88 RVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGIT-----TKDAALSVELGMRAVDLALGPAALASPVNNSDS 162 (186)
Q Consensus 88 ~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
.-+++++|+.+.. ..+ ++++||+|++|++....... ......-......++.++.+
T Consensus 8 ~~~i~~gD~~~~l----~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~r------------- 68 (284)
T PRK11524 8 AKTIIHGDALTEL----KKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHR------------- 68 (284)
T ss_pred CCEEEeccHHHHH----Hhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHH-------------
Confidence 3467788886532 122 46799999999875431110 01112233456678888888
Q ss_pred CCCCcccccCcEEEEE
Q 038391 163 STDSGVLKPGGHLVIK 178 (186)
Q Consensus 163 ~~~~~~LkpgG~lvi~ 178 (186)
+|||||.|+|.
T Consensus 69 -----vLK~~G~i~i~ 79 (284)
T PRK11524 69 -----VLKKQGTMYIM 79 (284)
T ss_pred -----HhCCCcEEEEE
Confidence 99999999984
No 273
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.29 E-value=0.083 Score=48.31 Aligned_cols=40 Identities=28% Similarity=0.279 Sum_probs=33.4
Q ss_pred CCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 38 KPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 38 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++.+|+-+|||+ |..+...++.+ |.+|+++|.++..++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-----GA~V~a~D~~~~rle~ 203 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-----GAIVRAFDTRPEVAEQ 203 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHH
Confidence 5688999999998 67777788887 4689999999988665
No 274
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.07 E-value=0.13 Score=42.07 Aligned_cols=121 Identities=16% Similarity=0.040 Sum_probs=59.3
Q ss_pred hhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------------------
Q 038391 22 RSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------------------- 82 (186)
Q Consensus 22 r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------------------- 82 (186)
|-+.++.+.-..+..-+..-++.|-|||.|++...+.-.-+. .-..|+|-||++.+++.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~--~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRR--RLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGG--GEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhH--HHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 334444444433332233458999999999999888765332 02379999999977321
Q ss_pred -----------------------------cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccch
Q 038391 83 -----------------------------LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDA 133 (186)
Q Consensus 83 -----------------------------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~ 133 (186)
..........++|+++.. .+..+. .+...|+|++|.+.--...|. .
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~--~~~~~~-~~~~~diViTDlPYG~~t~W~--g 186 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPS--PLAVLD-AGFTPDIVITDLPYGEMTSWQ--G 186 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HH--HHHHHH-TT---SEEEEE--CCCSSSTT--S
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCc--hhhhhc-cCCCCCEEEecCCCccccccc--C
Confidence 001223445567776532 222221 245679999998643222232 2
Q ss_pred HHHHHHHHHHHHHHcC
Q 038391 134 ALSVELGMRAVDLALG 149 (186)
Q Consensus 134 ~~~~~~~~~~~~~~~~ 149 (186)
..+..-...++.....
T Consensus 187 ~~~~~p~~~ml~~l~~ 202 (246)
T PF11599_consen 187 EGSGGPVAQMLNSLAP 202 (246)
T ss_dssp ---HHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHHHHh
Confidence 2444556677777776
No 275
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.04 E-value=0.11 Score=42.54 Aligned_cols=73 Identities=18% Similarity=0.170 Sum_probs=49.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
.+|.+||.+|-|-|.....+-+. ++ .+=+.||..+.-+.. -....++..+.+--.+... .+ +++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p----~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~----~L--~d~ 168 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP----DEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLN----TL--PDK 168 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC----cceEEEecCHHHHHHHHhcccccccceEEEecchHhhhc----cc--ccc
Confidence 67899999999999888877766 32 456678888766543 1234567777664333221 11 467
Q ss_pred CccEEEeCC
Q 038391 113 GFSVILSDM 121 (186)
Q Consensus 113 ~~D~V~~d~ 121 (186)
.||.|+-|.
T Consensus 169 ~FDGI~yDT 177 (271)
T KOG1709|consen 169 HFDGIYYDT 177 (271)
T ss_pred CcceeEeec
Confidence 899999863
No 276
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=95.01 E-value=0.14 Score=42.91 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCCCCEEEEEcccC--Ch--HHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 37 IKPGSSVLDLGCAP--GA--WLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 37 ~~~~~~vLDlGcG~--G~--~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
++...+||-+|+|+ |. -+..+.+.++. +.-++-.|+.+-.-.. -..+.+|+..+. +..
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~---~ailvDnDi~d~vSDa------~~~~~~Dc~t~~---------~~~ 120 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPE---DAILVDNDIRDYVSDA------DQSIVGDCRTYM---------PPD 120 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-T---T-EEEEEESS--B-SS------SEEEES-GGGEE---------ESS
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCC---CcEEEecchhhhcccc------CCceeccccccC---------CCC
Confidence 36678999999996 32 34555566655 6788888887654221 234567876553 357
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+||+|++||=-.....-..+................. .|+=||.++||+=+
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~------------------kLaLGGSvaiKiTE 171 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKE------------------KLALGGSVAIKITE 171 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHH------------------HEEEEEEEEEEE-S
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHh------------------hhhcCceEEEEeec
Confidence 9999999982000001111111112223344555555 78889999999743
No 277
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.71 E-value=0.048 Score=44.03 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=39.4
Q ss_pred EEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 43 VLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 43 vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
|.|+||--|++..++++.-. ..+++++|+++.-+.. .....++.+..+|-..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~----~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~ 59 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK----APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE 59 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS----EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG
T ss_pred CceeccchhHHHHHHHhcCC----CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc
Confidence 68999999999999999832 2379999999977544 4556789999998654
No 278
>PRK13699 putative methylase; Provisional
Probab=94.70 E-value=0.037 Score=45.28 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=41.8
Q ss_pred EEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCc----ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCC
Q 038391 90 QTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGIT----TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTD 165 (186)
Q Consensus 90 ~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (186)
+++++|+.+. +..+ +++++|+|++|+|....... ........+....++.++.+
T Consensus 3 ~l~~gD~le~----l~~l--pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~R---------------- 60 (227)
T PRK13699 3 RFILGNCIDV----MARF--PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYR---------------- 60 (227)
T ss_pred eEEechHHHH----HHhC--CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHH----------------
Confidence 4667887643 2222 57899999999876431110 01112234667788888888
Q ss_pred CcccccCcEEEE
Q 038391 166 SGVLKPGGHLVI 177 (186)
Q Consensus 166 ~~~LkpgG~lvi 177 (186)
+|||||.+++
T Consensus 61 --VLKpgg~l~i 70 (227)
T PRK13699 61 --VLKKDALMVS 70 (227)
T ss_pred --HcCCCCEEEE
Confidence 9999999886
No 279
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.57 E-value=0.0077 Score=51.33 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=63.9
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~ 98 (186)
++.|......+...++.|+|+-+|-|++|..+.=..+ ..+|+++|.+|..++. +....+...+.+|...
T Consensus 181 N~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~ag----Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~ 256 (351)
T KOG1227|consen 181 NIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAG----AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN 256 (351)
T ss_pred cHHHHHHhhhcccccchhhhhhcccceEEeehhhccC----ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc
Confidence 4556556656556678999999999999994444433 4799999999988654 2334455566666665
Q ss_pred CChhhHhhhCCCCCCccEEEeCCCCCCCCCcc
Q 038391 99 LPSNQVRALSPKQKGFSVILSDMCPSVSGITT 130 (186)
Q Consensus 99 ~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~ 130 (186)
.. +....|-|...+-|+....|-
T Consensus 257 ~~---------~~~~AdrVnLGLlPSse~~W~ 279 (351)
T KOG1227|consen 257 PK---------PRLRADRVNLGLLPSSEQGWP 279 (351)
T ss_pred cC---------ccccchheeeccccccccchH
Confidence 43 346788888877666666554
No 280
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.41 E-value=0.061 Score=39.19 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=29.4
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
+-..-+|+|||+|.+.-.+.+. |-.-+|+|.-...+
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R~Rk~ 93 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE------GYPGWGIDARRRKS 93 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC------CCCccccccccccc
Confidence 3457999999999888887775 67899999887763
No 281
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.25 E-value=0.094 Score=45.62 Aligned_cols=77 Identities=23% Similarity=0.434 Sum_probs=47.0
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCC--ChhhHhhhCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINL--PSNQVRALSPKQK 112 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~--~~~~l~~~~~~~~ 112 (186)
.++++.+||.+|||+ |..+..+++..+. .+|+++|.++.+++.........++ +.... ....+..+. .+.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~----~~vi~~~~~~~~~~~~~~~~~~~vi--~~~~~~~~~~~l~~~~-~~~ 253 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA----ERVIAIDRVPERLEMARSHLGAETI--NFEEVDDVVEALRELT-GGR 253 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEEcCCHHHHHHHHHcCCcEEE--cCCcchHHHHHHHHHc-CCC
Confidence 357889999999987 8888888888632 4699999998775542221122222 11111 112233333 245
Q ss_pred CccEEEe
Q 038391 113 GFSVILS 119 (186)
Q Consensus 113 ~~D~V~~ 119 (186)
.+|+|+.
T Consensus 254 ~~D~vld 260 (386)
T cd08283 254 GPDVCID 260 (386)
T ss_pred CCCEEEE
Confidence 7999987
No 282
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.06 E-value=0.086 Score=41.61 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=30.5
Q ss_pred HhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 25 FKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 25 ~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.+|++.+.... -.+|..|||..||+|..+....+. +-+.+|+|+++..
T Consensus 178 ~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y 225 (231)
T PF01555_consen 178 VELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEY 225 (231)
T ss_dssp HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHH
T ss_pred HHHHHHHHHhh-hccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHH
Confidence 35555333322 377999999999999655555554 5689999998764
No 283
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.80 E-value=0.1 Score=47.29 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=54.9
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..|+|+.+|.|+|+..+.+. .|+.+-+-+..-.. +.+ +-..+.=+..++. =.+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~vIydRGL---IG~yhDWCE~fsT--------YPRT 427 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPVIYDRGL---IGVYHDWCEAFST--------YPRT 427 (506)
T ss_pred eeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchhhhhccc---chhccchhhccCC--------CCcc
Confidence 36999999999999999765 25555444442111 111 1111111222222 2579
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|.++.-++ ..... -..+..+.++.| +|+|+|.++|.-
T Consensus 428 YDLlHA~~lfs--~~~~r------C~~~~illEmDR------------------ILRP~G~~iiRD 467 (506)
T PF03141_consen 428 YDLLHADGLFS--LYKDR------CEMEDILLEMDR------------------ILRPGGWVIIRD 467 (506)
T ss_pred hhheehhhhhh--hhccc------ccHHHHHHHhHh------------------hcCCCceEEEec
Confidence 99999864211 11111 125577778888 999999999853
No 284
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.80 E-value=0.28 Score=36.71 Aligned_cols=94 Identities=24% Similarity=0.300 Sum_probs=50.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
..+|+++|-|.=.......+.. |..|+++|+.+.... ..+.++.-|+.++..... ...|+|.+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-----G~dV~~tDi~~~~a~-----~g~~~v~DDif~P~l~iY-------~~a~lIYS 76 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-----GFDVIATDINPRKAP-----EGVNFVVDDIFNPNLEIY-------EGADLIYS 76 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-----S-EEEEE-SS-S---------STTEE---SSS--HHHH-------TTEEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc-----CCcEEEEECcccccc-----cCcceeeecccCCCHHHh-------cCCcEEEE
Confidence 4499999998765444444433 579999999999322 468899999998765432 57899988
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 120 DMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
= .| . .++....++.+. +-|.-++|+.|.+|.
T Consensus 77 i-RP----P--------~El~~~il~lA~---------------------~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 77 I-RP----P--------PELQPPILELAK---------------------KVGADLIIRPLGGES 107 (127)
T ss_dssp E-S--------------TTSHHHHHHHHH---------------------HHT-EEEEE-BTTB-
T ss_pred e-CC----C--------hHHhHHHHHHHH---------------------HhCCCEEEECCCCCC
Confidence 1 11 1 122444555554 337888999888875
No 285
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.74 E-value=0.085 Score=45.38 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=50.3
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcC-CCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLH-CDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~-~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
-+++||.||.|++..-+-+. +- -+.++|+.+..+.... ......++..|+.......+ ...++|+++
T Consensus 4 ~~~idLFsG~GG~~lGf~~a------gf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~-----~~~~~Dvli 72 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA------GFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEAL-----RKSDVDVLI 72 (328)
T ss_pred ceEEeeccCCchHHHHHHhc------CCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhc-----cccCCCEEE
Confidence 47999999999999888876 33 5888999999876522 22224556677765543322 112899999
Q ss_pred eCCCCC
Q 038391 119 SDMCPS 124 (186)
Q Consensus 119 ~d~~~~ 124 (186)
...+|.
T Consensus 73 gGpPCQ 78 (328)
T COG0270 73 GGPPCQ 78 (328)
T ss_pred eCCCCc
Confidence 987764
No 286
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.73 E-value=0.16 Score=43.25 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
..++++||-.|||+ |..+..+++..+ ..+|+++|.+++.++.
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G----~~~Vi~~~~~~~~~~~ 209 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLG----AAEIVCADVSPRSLSL 209 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC----CcEEEEEeCCHHHHHH
Confidence 34688999998764 555556666653 1379999999887654
No 287
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.72 E-value=0.044 Score=39.99 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=30.1
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIK 178 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~ 178 (186)
+||+|+| .+-..+++-...-+.+..++..+.. .|+|||.|++.
T Consensus 1 ~yDvilc-----lSVtkWIHLn~GD~Gl~~~f~~~~~------------------~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILC-----LSVTKWIHLNWGDEGLKRFFRRIYS------------------LLRPGGILILE 43 (110)
T ss_dssp -EEEEEE-----ES-HHHHHHHHHHHHHHHHHHHHHH------------------HEEEEEEEEEE
T ss_pred CccEEEE-----EEeeEEEEecCcCHHHHHHHHHHHH------------------hhCCCCEEEEe
Confidence 4899998 3444444444445566677888887 99999999985
No 288
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.58 E-value=1.5 Score=35.48 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=51.5
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeecCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVINLP 100 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~ 100 (186)
+...+.....++| ..|+++|..-|+-+.+++..+..-+...+|+++||+-..+..+ ....++.|++++-.++.
T Consensus 58 ~~~yQellw~~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpa 131 (237)
T COG3510 58 MWNYQELLWELQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPA 131 (237)
T ss_pred HHHHHHHHHhcCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHH
Confidence 3334444333444 4899999999999988887765421135899999998886653 33678999999877654
No 289
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=93.57 E-value=1.1 Score=37.56 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=54.8
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCC-CCCCeEEEEeCCCCCCCC----cCCC--CCeEEEEeeecC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPL-DNGGSVVGIDVKKVKVPS----LHCD--ARVQTVSADVIN 98 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~~~~v~gvDis~~~i~~----~~~~--~~~~~~~~d~~~ 98 (186)
.|+..+....++.+...++|+|||.|.++.++++.+... .+...++.||-....... .... ..+.=++.|+.+
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~d 84 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKD 84 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeec
Confidence 466667777778888999999999999999999987421 014689999987765433 1111 245555778877
Q ss_pred CChhhH
Q 038391 99 LPSNQV 104 (186)
Q Consensus 99 ~~~~~l 104 (186)
+....+
T Consensus 85 l~l~~~ 90 (259)
T PF05206_consen 85 LDLSKL 90 (259)
T ss_pred cchhhc
Confidence 764433
No 290
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.34 E-value=0.21 Score=46.88 Aligned_cols=37 Identities=11% Similarity=0.110 Sum_probs=27.4
Q ss_pred CEEEEEcccCChHHHHHHHHhC------C--CCCCCeEEEEeCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLG------P--LDNGGSVVGIDVKK 77 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~------~--~~~~~~v~gvDis~ 77 (186)
-+|+|+|-|+|.......+.+. + .+...+++++|..|
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 5899999999998888877661 1 11135899999866
No 291
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.17 E-value=0.069 Score=44.42 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=43.5
Q ss_pred cCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhC
Q 038391 34 YKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALS 108 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~ 108 (186)
+..+++..+|+|||||-==++....... ++..++|+||+..+++. .....+.+....|.....
T Consensus 100 f~~~~~p~sVlDigCGlNPlalp~~~~~----~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-------- 167 (251)
T PF07091_consen 100 FGRIPPPDSVLDIGCGLNPLALPWMPEA----PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-------- 167 (251)
T ss_dssp CCCS---SEEEEET-TTCHHHHHTTTSS----TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH--------
T ss_pred HhcCCCCchhhhhhccCCceehhhcccC----CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC--------
Confidence 4455667899999999766665555432 35799999999998654 233345556666654332
Q ss_pred CCCCCccEEEe
Q 038391 109 PKQKGFSVILS 119 (186)
Q Consensus 109 ~~~~~~D~V~~ 119 (186)
+....|+.+.
T Consensus 168 -~~~~~DlaLl 177 (251)
T PF07091_consen 168 -PKEPADLALL 177 (251)
T ss_dssp -TTSEESEEEE
T ss_pred -CCCCcchhhH
Confidence 3456788776
No 292
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.16 E-value=0.32 Score=41.54 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=29.5
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHH-hCCCCCCCeEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQS-LGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~-~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+++|++||-+|||+ |.++..++++ ++ +.+|+++|.++.+++.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g----~~~vi~~~~~~~k~~~ 204 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYP----ESKLVVFGKHQEKLDL 204 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcC----CCcEEEEeCcHhHHHH
Confidence 47799999999865 3344455554 32 3689999999877554
No 293
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.00 E-value=0.52 Score=38.60 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
++.+.++.|+||=-++++.++.+.-. ..++++.|+++..+.. +.+..+++...+|....-.
T Consensus 14 V~~~~~iaDIGsDHAYLp~~Lv~~~~----~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-------- 81 (226)
T COG2384 14 VKQGARIADIGSDHAYLPIYLVKNNP----ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-------- 81 (226)
T ss_pred HHcCCceeeccCchhHhHHHHHhcCC----cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC--------
Confidence 45677899999999999999999854 4689999999987543 5666778888887643321
Q ss_pred CCCCccEEEe
Q 038391 110 KQKGFSVILS 119 (186)
Q Consensus 110 ~~~~~D~V~~ 119 (186)
++..+|.|+.
T Consensus 82 ~~d~~d~ivI 91 (226)
T COG2384 82 LEDEIDVIVI 91 (226)
T ss_pred ccCCcCEEEE
Confidence 3457887754
No 294
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=92.89 E-value=0.12 Score=40.34 Aligned_cols=114 Identities=21% Similarity=0.291 Sum_probs=58.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
+++.+-+|...= |-..++-+. +..+|+.||..+--+..... .+++.+ .+.....++..-.++||.+.|
T Consensus 2 ~~~g~V~GS~~P-wvEv~aL~~----GA~~iltveyn~L~i~~~~~-dr~ssi------~p~df~~~~~~y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQP-WVEVMALQH----GAAKILTVEYNKLEIQEEFR-DRLSSI------LPVDFAKNWQKYAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCc-hhhHHHHHc----CCceEEEEeecccccCcccc-cccccc------cHHHHHHHHHHhhccchhhhe
Confidence 567777777744 334444333 34689999988765543211 122111 111222233222468999877
Q ss_pred CCCCCCCCCc-ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 120 DMCPSVSGIT-TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 120 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
--.....|.. --++.....-. ..+....+ +|||||.|++.+--|+|
T Consensus 70 ~~siEh~GLGRYGDPidp~Gdl-~~m~~i~~------------------vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 70 FSSIEHFGLGRYGDPIDPIGDL-RAMAKIKC------------------VLKPGGLLFLGVPVGTD 116 (177)
T ss_pred echhccccccccCCCCCccccH-HHHHHHHH------------------hhccCCeEEEEeecCCc
Confidence 3221111111 01111111112 44555555 99999999999988876
No 295
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=92.79 E-value=1.8 Score=40.91 Aligned_cols=129 Identities=17% Similarity=0.190 Sum_probs=74.4
Q ss_pred hhHHhHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEE---eCCCCCCCCcC----------CCCC
Q 038391 22 RSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGI---DVKKVKVPSLH----------CDAR 88 (186)
Q Consensus 22 r~~~~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gv---Dis~~~i~~~~----------~~~~ 88 (186)
.+-+|+..++..++ ++. .-.|-.|=|+|++|..+++.++. ++++-. |++..++.... ...+
T Consensus 307 GAHYKlRsIL~~~~-i~~-~d~l~~GDGSGGita~lLR~~p~----sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~ 380 (675)
T PF14314_consen 307 GAHYKLRSILKNLN-IKY-RDALCGGDGSGGITACLLRMNPT----SRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDK 380 (675)
T ss_pred cchhhHHHHHHhcC-CCc-ceeEEEecCchHHHHHHHHhCcc----cceeeeccccccCCCCCCCCCCCcHHHhccCccc
Confidence 34458888888877 444 34588888999999999999764 565543 44444433211 1111
Q ss_pred eEEE--------EeeecCCChhh-Hhhh-CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCC
Q 038391 89 VQTV--------SADVINLPSNQ-VRAL-SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVN 158 (186)
Q Consensus 89 ~~~~--------~~d~~~~~~~~-l~~~-~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
-+.+ ..|.++...+. ...+ ...+-++|+|++||- ..+......+.....+.+..
T Consensus 381 ~Rcvn~~~~W~~pSDLs~~~TW~YF~~l~~~~~~~idLiv~DmE-------V~d~~~~~kIe~~l~~~~~~--------- 444 (675)
T PF14314_consen 381 SRCVNLDTCWEHPSDLSDPETWKYFVSLKKQHNLSIDLIVMDME-------VRDDSIIRKIEDNLRDYVHS--------- 444 (675)
T ss_pred ceeecchhhhcCccccCCccHHHHHHHHHhhcCCcccEEEEece-------ecChHHHHHHHHHHHHHHHH---------
Confidence 2222 12333332111 1111 123569999999982 22322333334445555555
Q ss_pred CCCCCCCCcccccCcEEEEEEcc
Q 038391 159 NSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 159 ~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|.++|+|++|++-
T Consensus 445 ---------ll~~~gtLIfKTYl 458 (675)
T PF14314_consen 445 ---------LLEEPGTLIFKTYL 458 (675)
T ss_pred ---------hcCCCcEEEEehhH
Confidence 88999999999874
No 296
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=92.59 E-value=0.27 Score=42.15 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
.++++.+||-.|||+ |..+..+++.+ +. +|+++|.++...+.
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~-----G~~~Vi~~~~~~~~~~~ 216 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALA-----GASKIIAVDIDDRKLEW 216 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHH
Confidence 467899999998754 44555566665 34 59999998877543
No 297
>PRK11524 putative methyltransferase; Provisional
Probab=92.56 E-value=0.22 Score=41.90 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=30.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.+|..|||..||+|..+.. |.++ +-+.+|+|++++.++
T Consensus 207 ~~GD~VLDPF~GSGTT~~A-A~~l-----gR~~IG~Ei~~~Y~~ 244 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAV-AKAS-----GRKFIGIEINSEYIK 244 (284)
T ss_pred CCCCEEEECCCCCcHHHHH-HHHc-----CCCEEEEeCCHHHHH
Confidence 7899999999999965544 4444 568999999997754
No 298
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.49 E-value=0.17 Score=43.23 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=46.4
Q ss_pred EEEEcccCChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCCCc-CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeC
Q 038391 43 VLDLGCAPGAWLQVACQSLGPLDNGGS-VVGIDVKKVKVPSL-HCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 43 vLDlGcG~G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d 120 (186)
|+|+.||.|+++.-+-+. |.+ +.++|+.+...... ..... .++.+|+.++.... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a------G~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~-------~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA------GFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSD-------IPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc------CCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhh-------CCCcCEEEec
Confidence 689999999999888765 344 67899999886541 11222 44567777664332 1368999988
Q ss_pred CCCC
Q 038391 121 MCPS 124 (186)
Q Consensus 121 ~~~~ 124 (186)
.+|.
T Consensus 67 ~PCq 70 (315)
T TIGR00675 67 FPCQ 70 (315)
T ss_pred CCCc
Confidence 7653
No 299
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=92.41 E-value=0.17 Score=43.58 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=27.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.-+||--|||.|.++.-++.. |-++-|-|+|--|
T Consensus 151 ki~iLvPGaGlGRLa~dla~~------G~~~qGNEfSy~M 184 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL------GFKCQGNEFSYFM 184 (369)
T ss_pred CceEEecCCCchhHHHHHHHh------cccccccHHHHHH
Confidence 457999999999999999987 4567777887766
No 300
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=92.40 E-value=0.81 Score=35.32 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=43.8
Q ss_pred HHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhh
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
.....+...+ ..-|||+|=|+|..=-++.+.++ +-+|+.+|-.-..-...- -+.-.++++|+.+.... ++.+
T Consensus 19 ~~a~~~v~~~--~G~VlElGLGNGRTydHLRe~~p----~R~I~vfDR~l~~hp~~~-P~~~~~ilGdi~~tl~~-~~~~ 90 (160)
T PF12692_consen 19 NWAAAQVAGL--PGPVLELGLGNGRTYDHLREIFP----DRRIYVFDRALACHPSST-PPEEDLILGDIRETLPA-LARF 90 (160)
T ss_dssp HHHHHHTTT----S-EEEE--TTSHHHHHHHHH------SS-EEEEESS--S-GGG----GGGEEES-HHHHHHH-HHHH
T ss_pred HHHHHHhcCC--CCceEEeccCCCccHHHHHHhCC----CCeEEEEeeecccCCCCC-CchHheeeccHHHHhHH-HHhc
Confidence 3344443322 35899999999999999999986 489999996554422211 12346788988754322 3333
Q ss_pred CCCCCCccEEEeCC
Q 038391 108 SPKQKGFSVILSDM 121 (186)
Q Consensus 108 ~~~~~~~D~V~~d~ 121 (186)
+.+.-++.+|.
T Consensus 91 ---g~~a~laHaD~ 101 (160)
T PF12692_consen 91 ---GAGAALAHADI 101 (160)
T ss_dssp ----S-EEEEEE--
T ss_pred ---CCceEEEEeec
Confidence 56888898886
No 301
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.17 E-value=0.5 Score=39.45 Aligned_cols=43 Identities=28% Similarity=0.491 Sum_probs=31.4
Q ss_pred cCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
...++++.+||..|+|. |..+..+++.. +.+|++++.++...+
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~-----G~~V~~~~~s~~~~~ 203 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAM-----GAAVIAVDIKEEKLE 203 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHc-----CCEEEEEcCCHHHHH
Confidence 33467888999987763 66777777775 468999998887643
No 302
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=92.14 E-value=0.4 Score=40.48 Aligned_cols=40 Identities=25% Similarity=0.486 Sum_probs=28.0
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVKVP 81 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~ 81 (186)
+++|.+||=+|+|. |..+..+++.+ +.+ |++++.++....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~-----G~~~vi~~~~~~~~~~ 202 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARAL-----GAEDVIGVDPSPERLE 202 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHH
Confidence 57799999998754 44555566665 355 999998877644
No 303
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.07 E-value=0.25 Score=43.69 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=37.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
+-+++........-..|+|+|+|.|+++++++-.+ +-.|++||-++..
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-----~lsV~aIegsq~~ 188 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-----GLSVKAIEGSQRL 188 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-----CceEEEeccchHH
Confidence 34444444444556799999999999999999886 5799999999755
No 304
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.65 E-value=0.5 Score=37.74 Aligned_cols=43 Identities=28% Similarity=0.428 Sum_probs=31.1
Q ss_pred HcCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 33 QYKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
....++++.+||..|+|+ |..+..+++.. +.+|++++.++...
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~~-----g~~v~~~~~~~~~~ 171 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKAA-----GARVIVTDRSDEKL 171 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEcCCHHHH
Confidence 344457899999999986 55555666654 57899999887553
No 305
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.59 E-value=0.51 Score=39.70 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=27.4
Q ss_pred CCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 38 KPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 38 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++.+||-+|||+ |.++..+++.++. ..|+++|..+.++..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~----~~v~~~~~~~~rl~~ 184 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG----SPPAVWETNPRRRDG 184 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHh
Confidence 3577899888875 5566666666531 347778887766544
No 306
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=91.55 E-value=0.37 Score=44.23 Aligned_cols=102 Identities=21% Similarity=0.298 Sum_probs=68.2
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
...|.-+|+|-|=+.....+......-+.++++||.+|.++.- .-...+++++..|++.... +..+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~a--------p~eq 439 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNA--------PREQ 439 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCC--------chhh
Confidence 3457789999997665544433221126799999999998532 2235689999999988752 2368
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLV 176 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lv 176 (186)
.|++++-. -|.. -+ .++..+.++-+.+ .|||.|+.|
T Consensus 440 ~DI~VSEL----LGSF-GD----NELSPECLDG~q~------------------fLkpdgIsI 475 (649)
T KOG0822|consen 440 ADIIVSEL----LGSF-GD----NELSPECLDGAQK------------------FLKPDGISI 475 (649)
T ss_pred ccchHHHh----hccc-cC----ccCCHHHHHHHHh------------------hcCCCceEc
Confidence 99998743 1111 11 2345578888888 999998765
No 307
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.37 E-value=0.53 Score=42.00 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHHHHcCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 28 LQIQKQYKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 28 ~~~~~~~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
..+.......-+|++|+-+|||+ |......++.+ |.+|+.+|.++.....
T Consensus 190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-----Ga~ViV~d~d~~R~~~ 240 (413)
T cd00401 190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-----GARVIVTEVDPICALQ 240 (413)
T ss_pred HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEECChhhHHH
Confidence 33445445456799999999998 54555555554 5689999999887554
No 308
>PHA01634 hypothetical protein
Probab=91.24 E-value=0.31 Score=36.85 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=32.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
++++|+|+|++.|-.+++++-+ +..+|++++.++....
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-----GAK~Vva~E~~~kl~k 65 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-----GASFVVQYEKEEKLRK 65 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-----CccEEEEeccCHHHHH
Confidence 5789999999999999999987 3468999999998743
No 309
>PRK13699 putative methylase; Provisional
Probab=91.09 E-value=0.45 Score=38.87 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
.+|..|||..||+|.......+. +-+.+|+|+++...
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~ 198 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYH 198 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHH
Confidence 68999999999999666555553 56899999999764
No 310
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.00 E-value=4.9 Score=29.80 Aligned_cols=94 Identities=23% Similarity=0.246 Sum_probs=61.7
Q ss_pred CCCCEEEEEcccCCh-HHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 38 KPGSSVLDLGCAPGA-WLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~-~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
.+| +|+++|.|-=. .+..++++ |..|+++||.+.... ..++++..|++++.... -...|+
T Consensus 13 ~~g-kVvEVGiG~~~~VA~~L~e~------g~dv~atDI~~~~a~-----~g~~~v~DDitnP~~~i-------Y~~A~l 73 (129)
T COG1255 13 ARG-KVVEVGIGFFLDVAKRLAER------GFDVLATDINEKTAP-----EGLRFVVDDITNPNISI-------YEGADL 73 (129)
T ss_pred cCC-cEEEEccchHHHHHHHHHHc------CCcEEEEecccccCc-----ccceEEEccCCCccHHH-------hhCccc
Confidence 345 99999876432 22333333 679999999998422 57899999999876542 357899
Q ss_pred EEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 117 ILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 117 V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
|.+=-+ . .++....++.+.+ -|..++|+-|.||.
T Consensus 74 IYSiRp--------p-----pEl~~~ildva~a---------------------Vga~l~I~pL~Ge~ 107 (129)
T COG1255 74 IYSIRP--------P-----PELQSAILDVAKA---------------------VGAPLYIKPLTGEP 107 (129)
T ss_pred eeecCC--------C-----HHHHHHHHHHHHh---------------------hCCCEEEEecCCCC
Confidence 987211 1 2334455555543 37778888888876
No 311
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.81 E-value=0.15 Score=36.97 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=57.4
Q ss_pred cCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCCCccEEEeCCCCCCCC
Q 038391 49 APGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSDMCPSVSG 127 (186)
Q Consensus 49 G~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~~D~V~~d~~~~~~~ 127 (186)
|.|..+..+++.+ +.+|+++|.++..++...... ...+ .|..+.. .+.+.++.. +..+|+|+- +.+
T Consensus 1 ~vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~~~~~G-a~~~-~~~~~~~~~~~i~~~~~-~~~~d~vid-----~~g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-----GAKVIATDRSEEKLELAKELG-ADHV-IDYSDDDFVEQIRELTG-GRGVDVVID-----CVG 67 (130)
T ss_dssp HHHHHHHHHHHHT-----TSEEEEEESSHHHHHHHHHTT-ESEE-EETTTSSHHHHHHHHTT-TSSEEEEEE-----SSS
T ss_pred ChHHHHHHHHHHc-----CCEEEEEECCHHHHHHHHhhc-cccc-ccccccccccccccccc-cccceEEEE-----ecC
Confidence 4577888888886 489999999997755432222 1111 2222222 235555553 468999987 223
Q ss_pred CcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 128 ITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
. ...+..+.. +|+++|++++--+.+
T Consensus 68 ~------------~~~~~~~~~------------------~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 S------------GDTLQEAIK------------------LLRPGGRIVVVGVYG 92 (130)
T ss_dssp S------------HHHHHHHHH------------------HEEEEEEEEEESSTS
T ss_pred c------------HHHHHHHHH------------------HhccCCEEEEEEccC
Confidence 1 245555666 899999999877665
No 312
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.80 E-value=0.89 Score=38.60 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~~ 82 (186)
.++++.+||-.|||+ |..+..+++.+ +.+ |++++.++...+.
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~-----G~~~v~~~~~~~~~~~~ 200 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVAL-----GAKSVTAIDINSEKLAL 200 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHH
Confidence 457889999998765 55556666665 344 7899988876543
No 313
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.77 E-value=0.9 Score=41.34 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
+++.|.|.+||+|++.....+.....-...+++|.+..+.+.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~ 258 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTY 258 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHH
Confidence 568999999999998876554432100135799999999874
No 314
>PLN02740 Alcohol dehydrogenase-like
Probab=90.48 E-value=0.88 Score=39.44 Aligned_cols=43 Identities=23% Similarity=0.418 Sum_probs=30.9
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..+++|++||-+|||+ |..+..+++.. +. +|+++|.++..++.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~-----G~~~Vi~~~~~~~r~~~ 238 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARAR-----GASKIIGVDINPEKFEK 238 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHC-----CCCcEEEEcCChHHHHH
Confidence 3468899999998764 44555566654 34 69999999877554
No 315
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=90.42 E-value=0.14 Score=41.62 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=30.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.-.+.|||||-|+++..++..++ ..-++|+||--.-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fP----dtLiLGmEIR~KV 96 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFP----DTLILGMEIRDKV 96 (249)
T ss_pred cceEEeeccCccchhhhccccCc----cceeeeehhhHHH
Confidence 34689999999999999999986 4889999986543
No 316
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.33 E-value=0.38 Score=41.15 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=24.8
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDV 75 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDi 75 (186)
++++.+||-+|+|+ |.++..+++.. +.+|++++.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-----G~~vi~~~~ 204 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-----GFEVYVLNR 204 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEec
Confidence 45788999998865 55555566664 468999987
No 317
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=90.27 E-value=0.24 Score=43.60 Aligned_cols=98 Identities=26% Similarity=0.212 Sum_probs=61.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCC-CeEEEEeeecCCChhhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDA-RVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~-~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..-+|||.=+|+|.-++-.+...+. ..+|+..|+++..++. +.... ++.+.+.|+..+-.. .
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~---~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~-------~ 118 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAG---VDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS-------R 118 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SS---ECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH-------S
T ss_pred CCceEEeccccccHHHHHHHHHcCC---CCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh-------c
Confidence 3458999999999988888877542 3689999999987543 23333 567767776542110 3
Q ss_pred CCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 111 QKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 111 ~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
...||+|=.|+ -| . ...+++-+.+ .+|.||.|.|+.
T Consensus 119 ~~~fD~IDlDP----fG--S---------p~pfldsA~~------------------~v~~gGll~vTa 154 (377)
T PF02005_consen 119 QERFDVIDLDP----FG--S---------PAPFLDSALQ------------------AVKDGGLLCVTA 154 (377)
T ss_dssp TT-EEEEEE------SS-------------HHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred cccCCEEEeCC----CC--C---------ccHhHHHHHH------------------HhhcCCEEEEec
Confidence 57999998875 12 1 2246666666 889999999874
No 318
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=90.25 E-value=0.59 Score=38.66 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=27.8
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..++++||-+|+|+ |..+..+++.. +. +|+++|.++..++.
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~-----G~~~Vi~~~~~~~r~~~ 160 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAA-----GAARVVAADPSPDRREL 160 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHH
Confidence 35788999998764 44555555554 34 49999988876543
No 319
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=90.24 E-value=0.42 Score=39.61 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=36.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
.|++||=+| -+-+++..+...+. ..+|+.+||.+..+.. ....-.++.++.|+.+.-++. ..++
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~~---~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~------~~~~ 112 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTGL---PKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEE------LRGK 112 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TT------TSS-
T ss_pred cCCEEEEEc--CCcHHHHHHHhhCC---CCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHH------HhcC
Confidence 478898777 44444443333332 4799999999998654 122334888888988754332 2579
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
||++++|++
T Consensus 113 fD~f~TDPP 121 (243)
T PF01861_consen 113 FDVFFTDPP 121 (243)
T ss_dssp BSEEEE---
T ss_pred CCEEEeCCC
Confidence 999999985
No 320
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.22 E-value=0.79 Score=39.50 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=30.3
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..++++.+||=.|+|+ |..+..+++.. +. +|+++|.++..++.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~-----G~~~Vi~~~~~~~r~~~ 231 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAA-----GASQVVAVDLNEDKLAL 231 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCcEEEEcCCHHHHHH
Confidence 3467899999998764 44555566654 34 69999998877543
No 321
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=90.01 E-value=2.9 Score=36.04 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.+++|.+||-.|+|+ |..+..+++.. +.+|++++.++..
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~-----Ga~vi~~~~~~~~ 219 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAF-----GLKVTVISSSSNK 219 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCcch
Confidence 356788999888865 55666666665 4689999887755
No 322
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=89.61 E-value=1.2 Score=38.77 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=63.3
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
+++|.+|.-+|||. |.....-+...+ ..+++++|+.+.+++.+....-..++...-...-.+.+.++. ++..|
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~ag----A~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T--~gG~d 256 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAG----AGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELT--DGGAD 256 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcC----CceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhc--CCCCC
Confidence 58899999999986 444445555554 479999999999987654444344443211101122334443 34677
Q ss_pred EEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCC
Q 038391 116 VILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQD 184 (186)
Q Consensus 116 ~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~ 184 (186)
.++- ..|.. ..++.+.. .++++|..++.-+.+..
T Consensus 257 ~~~e-----~~G~~------------~~~~~al~------------------~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 257 YAFE-----CVGNV------------EVMRQALE------------------ATHRGGTSVIIGVAGAG 290 (366)
T ss_pred EEEE-----ccCCH------------HHHHHHHH------------------HHhcCCeEEEEecCCCC
Confidence 7754 22221 23444444 66679998887776543
No 323
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=89.49 E-value=0.32 Score=41.17 Aligned_cols=39 Identities=26% Similarity=0.145 Sum_probs=32.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
-.+++|||+|||+|...+...... ...+...|++..-+.
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~-----~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG-----AVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc-----cceeeeEecchhhee
Confidence 458999999999999999888872 368999999988763
No 324
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=88.95 E-value=5.5 Score=31.57 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=28.5
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.+|+-+| |.|.+++...+.|.. .+.-|..||+++.-
T Consensus 4 grVivYG-GkGALGSacv~~Fka--nnywV~siDl~eNe 39 (236)
T KOG4022|consen 4 GRVIVYG-GKGALGSACVEFFKA--NNYWVLSIDLSENE 39 (236)
T ss_pred ceEEEEc-CcchHhHHHHHHHHh--cCeEEEEEeecccc
Confidence 4677666 889999999998875 35689999998865
No 325
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=88.93 E-value=0.55 Score=36.89 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=31.1
Q ss_pred ccEEEeCCCCCCCCC--------cccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGI--------TTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+|+|++|+|...... .......=.+....++.++.+ +|||+|.++|.+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~r------------------vLk~~g~~~i~~ 56 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYR------------------VLKPGGSIFIFI 56 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHH------------------HEEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHh------------------hcCCCeeEEEEe
Confidence 488999887544433 112233445567788889998 999999999864
No 326
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=88.87 E-value=0.51 Score=42.71 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=73.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCC------CCCeEEEEeeecCCChhhHhhhCC---
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHC------DARVQTVSADVINLPSNQVRALSP--- 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~------~~~~~~~~~d~~~~~~~~l~~~~~--- 109 (186)
.+..+|-+|-|.|+++.++-..++ ..++++|++.|+++..+.. ..+....-.|-. ..+..+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p----~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl----~~~~~~~k~~~ 366 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP----KFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGL----DFLQRTAKSQQ 366 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC----ccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhch----HHHHHHhhccc
Confidence 356889999999999999998875 4899999999999765211 011111112221 22333321
Q ss_pred CCCCccEEEeCCC-CCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEcc
Q 038391 110 KQKGFSVILSDMC-PSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 110 ~~~~~D~V~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
.+-.||++..|-. ++..|..-. ........++..+.. .|.|.|.++|.+..
T Consensus 367 ~~~~~dvl~~dvds~d~~g~~~p---p~~fva~~~l~~~k~------------------~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 367 EDICPDVLMVDVDSKDSHGMQCP---PPAFVAQVALQPVKM------------------ILPPRGMFIINLVT 418 (482)
T ss_pred cccCCcEEEEECCCCCcccCcCC---chHHHHHHHHHHHhh------------------ccCccceEEEEEec
Confidence 3468999988753 123333322 334455567777777 99999999998764
No 327
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.75 E-value=1.7 Score=35.78 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=31.0
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCC----CCeEEEEeCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDN----GGSVVGIDVKKVK 79 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~----~~~v~gvDis~~~ 79 (186)
-+|+++|+|+|.+...+.+.+....+ ..+++-||+|+.+
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 58999999999999999998765322 3589999999988
No 328
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=88.66 E-value=0.39 Score=43.31 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=35.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEe
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSA 94 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~ 94 (186)
-|||+|+|+|.++...++.. +-.|+++|.-.-|... +....+++++.-
T Consensus 69 ~vLdigtGTGLLSmMAvrag-----aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-----ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-----CCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 48999999998888888773 4589999999888432 344456666644
No 329
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.56 E-value=3.2 Score=34.32 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-hhH-hhh-CCCCCCcc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-NQV-RAL-SPKQKGFS 115 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~~l-~~~-~~~~~~~D 115 (186)
....||-.||..|+++..++..+-. .|..|++.--+-+....-....++.....|+++... ..+ .++ ..+.++.|
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~--~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld 83 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFAR--NGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLD 83 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHh--CCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceE
Confidence 4568999999999999999988865 377999986555443332223457777888876541 111 111 12578999
Q ss_pred EEEeCCCCCCC
Q 038391 116 VILSDMCPSVS 126 (186)
Q Consensus 116 ~V~~d~~~~~~ 126 (186)
+.+.|+.-++.
T Consensus 84 ~L~NNAG~~C~ 94 (289)
T KOG1209|consen 84 LLYNNAGQSCT 94 (289)
T ss_pred EEEcCCCCCcc
Confidence 99998754433
No 330
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.37 E-value=0.58 Score=38.89 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=51.0
Q ss_pred hHHHHHHHcCC--CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--------CCCCCeEEEEee
Q 038391 26 KLLQIQKQYKL--IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--------HCDARVQTVSAD 95 (186)
Q Consensus 26 ~l~~~~~~~~~--~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--------~~~~~~~~~~~d 95 (186)
-|.+++..-+. +.++-++||+|.|.-.+--.+..+.= +.+.+|-|+++..+..+ .....++...-.
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY----gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk 138 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY----GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQK 138 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee----cceeecCccCHHHHHHHHHHHHcCcchhhheeEEecc
Confidence 34555554332 23456899999997654444433321 46899999999886542 222334444322
Q ss_pred ecCCChhhHhhhCCCCCCccEEEeCCCCC
Q 038391 96 VINLPSNQVRALSPKQKGFSVILSDMCPS 124 (186)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~D~V~~d~~~~ 124 (186)
-...-++ +.....+.||.++||++++
T Consensus 139 ~~~~if~---giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 139 DSDAIFN---GIIGKNERYDATLCNPPFH 164 (292)
T ss_pred Ccccccc---ccccccceeeeEecCCCcc
Confidence 1111111 1112257999999998743
No 331
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=88.01 E-value=0.45 Score=40.73 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=71.0
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----------cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----------LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----------~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
...++||-+|-|-|+..+..+.+ .. =..++-+|+...-++. .....++.+.-+|-..+ ++..
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~---ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~f----l~~~ 191 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KS---VENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLF----LEDL 191 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-cc---ccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHH----HHHh
Confidence 44579999999999999999988 32 2478888888766433 23456788777765432 2222
Q ss_pred CCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 108 SPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
+.+.||+|++|.+-+... . -.-..+..+..+.+ .||++|++++.-
T Consensus 192 --~~~~~dVii~dssdpvgp-a------~~lf~~~~~~~v~~------------------aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 192 --KENPFDVIITDSSDPVGP-A------CALFQKPYFGLVLD------------------ALKGDGVVCTQG 236 (337)
T ss_pred --ccCCceEEEEecCCccch-H------HHHHHHHHHHHHHH------------------hhCCCcEEEEec
Confidence 367999999976411111 1 11124466677777 899999998763
No 332
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=87.73 E-value=2.7 Score=35.40 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=39.7
Q ss_pred HcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 33 QYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 33 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
+...+..++..+|+|+|+...+..+.+.+.+.+.-.+.+.||++...+..
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ 121 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRA 121 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHH
Confidence 33345568899999999999999999888764444589999999988654
No 333
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=87.62 E-value=3 Score=35.71 Aligned_cols=42 Identities=26% Similarity=0.173 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 35 KLIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 35 ~~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
..+++|.+||=.|+ | .|..+..+++.. +.+|++++.++...+
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~-----G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH-----GCYVVGSAGSSQKVD 197 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEcCCHHHHH
Confidence 34688999999998 3 466777777775 468999988876644
No 334
>PLN02827 Alcohol dehydrogenase-like
Probab=87.44 E-value=1.3 Score=38.54 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=29.0
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|.+||-.|+|+ |..+..+++..+ ...|+++|.++...+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G----~~~vi~~~~~~~~~~~ 233 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG----ASQIIGVDINPEKAEK 233 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCeEEEECCCHHHHHH
Confidence 467899999998754 444455555552 1368999988876443
No 335
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.38 E-value=1.5 Score=37.32 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|.+||-.|+|+ |..+..+++.+ +.+|++++.++...+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~-----G~~vi~~~~~~~~~~~ 204 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQ-----GATVHVMTRGAAARRL 204 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHC-----CCeEEEEeCChHHHHH
Confidence 468899999999754 34445555554 4689999998877543
No 336
>PRK06179 short chain dehydrogenase; Provisional
Probab=87.28 E-value=8.2 Score=31.23 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=49.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVI 117 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V 117 (186)
+..||-.|+ +|+++..+++.+-.. +.+|++++-++..... ..++.+++.|+.+... ..+.......+.+|++
T Consensus 4 ~~~vlVtGa-sg~iG~~~a~~l~~~--g~~V~~~~r~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~l 77 (270)
T PRK06179 4 SKVALVTGA-SSGIGRATAEKLARA--GYRVFGTSRNPARAAP---IPGVELLELDVTDDASVQAAVDEVIARAGRIDVL 77 (270)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHC--CCEEEEEeCChhhccc---cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence 457787784 677888888776542 6789999887655432 2357788899886531 1122221123578999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 78 i~~ag 82 (270)
T PRK06179 78 VNNAG 82 (270)
T ss_pred EECCC
Confidence 98764
No 337
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.28 E-value=1.4 Score=40.48 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=30.2
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
++.+|+-+|||+ |.....++..+ +..|+.+|.++..++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-----GA~V~v~d~~~~rle~ 202 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-----GAIVRAFDTRPEVKEQ 202 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHH
Confidence 467999999998 56666677776 4679999999876543
No 338
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.28 E-value=1.2 Score=37.91 Aligned_cols=42 Identities=26% Similarity=0.509 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++++.+||-+|||+ |..+..+++.+ +.+|+++|.++..++.
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~-----G~~vi~~~~~~~~~~~ 205 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAM-----GAAVVAIDIDPEKLEM 205 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEEcCCHHHHHH
Confidence 467899999999865 55666666665 4689999998877544
No 339
>PRK10458 DNA cytosine methylase; Provisional
Probab=86.90 E-value=1.3 Score=40.12 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=48.4
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---cC-CCCCeEEEEeeecCCChhhH---------hhh
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---LH-CDARVQTVSADVINLPSNQV---------RAL 107 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~~-~~~~~~~~~~d~~~~~~~~l---------~~~ 107 (186)
-+++|+.||.|++..-+-+. +.-.|.++|+.+.+..- +. .......+..|+..+....+ ..+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~a-----G~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAI-----GGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred ceEEEeCcCccHHHHHHHHc-----CCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhh
Confidence 38999999999999999765 12367899999877543 11 12233445567766542111 000
Q ss_pred CCCCCCccEEEeCCCCC
Q 038391 108 SPKQKGFSVILSDMCPS 124 (186)
Q Consensus 108 ~~~~~~~D~V~~d~~~~ 124 (186)
...-..+|+++...+|.
T Consensus 164 ~~~~p~~DvL~gGpPCQ 180 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQ 180 (467)
T ss_pred hccCCCCCEEEEcCCCC
Confidence 00113689998877664
No 340
>PRK08265 short chain dehydrogenase; Provisional
Probab=86.90 E-value=1.8 Score=35.24 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=48.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCcc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGFS 115 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D 115 (186)
++++|-.|+ +|+++..+++.+... +.+|+.++.++..+.. .....++.+++.|+.+... ..+......-+.+|
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 567777775 556787777776432 6799999988754322 1112457888899887531 11111111124789
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
+++.+..
T Consensus 83 ~lv~~ag 89 (261)
T PRK08265 83 ILVNLAC 89 (261)
T ss_pred EEEECCC
Confidence 9988764
No 341
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=0.077 Score=41.68 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=27.4
Q ss_pred CCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 40 GSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 40 ~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
|.+||++|.|- |.-+..++-..+ ...|+-.|-++..+..
T Consensus 30 g~~ilelgggft~laglmia~~a~----~~~v~ltdgne~svrn 69 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAP----DSSVWLTDGNEESVRN 69 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecC----CceEEEecCCHHHHHH
Confidence 67899999995 555555555543 4688888888876543
No 342
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.62 E-value=1.7 Score=35.31 Aligned_cols=82 Identities=11% Similarity=0.058 Sum_probs=49.1
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC---CC-cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV---PS-LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i---~~-~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++.+|-.|+++ ++++..+++++-.. +.+|+.++.+.... .. ........+++.|+++... ..+......-
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRAL--GAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHc
Confidence 467889999988 48888888776532 67898888775431 11 1111234567788876531 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 87 g~ld~lv~nAg 97 (258)
T PRK07533 87 GRLDFLLHSIA 97 (258)
T ss_pred CCCCEEEEcCc
Confidence 57999999864
No 343
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.59 E-value=4 Score=34.19 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=30.3
Q ss_pred CCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
..+++|.+||=.|++ .|..+..+++.. +.+|++++-++...+
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-----G~~Vi~~~~s~~~~~ 177 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK-----GCKVVGAAGSDEKVA 177 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHH
Confidence 346889999988853 466666677765 468999988776643
No 344
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.86 E-value=2.1 Score=36.36 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=29.3
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.++++++||-.|+|+ |..+..+++.++ ...|+++|.++....
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G----~~~v~~~~~~~~~~~ 205 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG----AGRIIAVGSRPNRVE 205 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCeEEEEeCCHHHHH
Confidence 467889999988764 555566666653 236999998876643
No 345
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=85.60 E-value=2.3 Score=37.34 Aligned_cols=45 Identities=24% Similarity=0.217 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEc-ccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLG-CAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlG-cG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+++|.+||-+| +|+ |..+..+++..+. +..+|+++|.++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~--g~~~Vi~~~~~~~r~~~ 218 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPI--GPSLLVVTDVNDERLAR 218 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhccc--CCceEEEEcCCHHHHHH
Confidence 357888999997 454 6666667776531 12379999999887554
No 346
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=85.51 E-value=3.1 Score=35.88 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..++++.+||-+|||+ |..+..+++.+ +. +|+++|.++..++.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~-----G~~~Vi~~~~~~~~~~~ 225 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMA-----KASRIIAIDINPAKFEL 225 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHH
Confidence 3467899999998865 55556666665 34 79999998877543
No 347
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=85.49 E-value=2.3 Score=37.36 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=27.8
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.++++++||-.|+|+ |..+..+++.++. ..|+.+|.++..++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga----~~vi~~d~~~~r~~~ 225 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA----AVVIVGDLNPARLAQ 225 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----ceEEEeCCCHHHHHH
Confidence 367788888888765 5555666666531 346667887755443
No 348
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.20 E-value=3.1 Score=33.80 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=49.7
Q ss_pred CCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCC--CCCCC--cCCCCCeEEEEeeecCCCh-h-hHhhhCCCC
Q 038391 39 PGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKK--VKVPS--LHCDARVQTVSADVINLPS-N-QVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~--~~i~~--~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~ 111 (186)
.++.+|-.|+| +++++..+++.+-. .+.+|+.++.+. ..+.. .....++.+++.|+.+... . .+.......
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~--~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQE--QGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHV 83 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHH--CCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence 35688989986 67888888877654 267899888764 22211 1111246677888876531 1 111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 84 g~iD~li~nAG 94 (256)
T PRK07889 84 DGLDGVVHSIG 94 (256)
T ss_pred CCCcEEEEccc
Confidence 57999999764
No 349
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=85.19 E-value=2.7 Score=37.26 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=15.4
Q ss_pred CCEEEEEcccCChHHHHHH
Q 038391 40 GSSVLDLGCAPGAWLQVAC 58 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~ 58 (186)
.-.|+|+|||+|..+..+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 4589999999998876554
No 350
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.84 E-value=3.4 Score=32.14 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=65.5
Q ss_pred cccCChHHHHHHHHhCCCCCCCeEEEE--eCCCCCCCCcC---------CCCCeEEEE-eeecCCChhhHhhhCCCCCCc
Q 038391 47 GCAPGAWLQVACQSLGPLDNGGSVVGI--DVKKVKVPSLH---------CDARVQTVS-ADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 47 GcG~G~~~~~l~~~~~~~~~~~~v~gv--Dis~~~i~~~~---------~~~~~~~~~-~d~~~~~~~~l~~~~~~~~~~ 114 (186)
|=|.=-++..+++..+. ..++++. |-..+...+.. ...+++++. .|+..+.... ......|
T Consensus 4 GeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~----~~~~~~F 76 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHF----RLKNQRF 76 (166)
T ss_pred eccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccc----cccCCcC
Confidence 33444566777777652 3455555 44433333211 122344443 3555543221 1135789
Q ss_pred cEEEeCCCCCCCCCc--ccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccCCCC
Q 038391 115 SVILSDMCPSVSGIT--TKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLESQDA 185 (186)
Q Consensus 115 D~V~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~ 185 (186)
|.|+-|.|-...+.. ..+.....+++..++..+.. +|+++|.+.|++..++-+
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~------------------~L~~~G~IhVTl~~~~py 131 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQ------------------LLKPDGEIHVTLKDGQPY 131 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHH------------------hcCCCCEEEEEeCCCCCC
Confidence 999998753221111 12223445677788888887 999999999999998753
No 351
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=84.01 E-value=2.9 Score=35.96 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=29.7
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
.++++.+||-+|+|+ |..+..+++.+ +. +|+++|.++..++.
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~-----G~~~vi~~~~~~~~~~~ 226 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAA-----GASRIIGIDINPDKFEL 226 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHH
Confidence 467899999998754 44455555655 35 79999999877543
No 352
>PRK06398 aldose dehydrogenase; Validated
Probab=83.60 E-value=16 Score=29.50 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=46.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVI 117 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V 117 (186)
++++|-.|+ +|+++..+++++.. .+.+|+.++.++... .++.+++.|+.+... ..+......-+.+|++
T Consensus 6 gk~vlItGa-s~gIG~~ia~~l~~--~G~~Vi~~~r~~~~~------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~l 76 (258)
T PRK06398 6 DKVAIVTGG-SQGIGKAVVNRLKE--EGSNVINFDIKEPSY------NDVDYFKVDVSNKEQVIKGIDYVISKYGRIDIL 76 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH--CCCeEEEEeCCcccc------CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 567888885 56677777777643 267999988765432 257788888876531 1122221112479999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 77 i~~Ag 81 (258)
T PRK06398 77 VNNAG 81 (258)
T ss_pred EECCC
Confidence 98764
No 353
>PRK06182 short chain dehydrogenase; Validated
Probab=83.60 E-value=6.1 Score=32.18 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVI 117 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V 117 (186)
++.+|=.|+ +|+++..+++.+-. .+.+|++++-++..+.... ..++.++..|+.+... ..+.......+.+|++
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~--~G~~V~~~~r~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAA--QGYTVYGAARRVDKMEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 457777775 56688888877643 2679999987766543211 1247788899876531 1122221123478999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 79 i~~ag 83 (273)
T PRK06182 79 VNNAG 83 (273)
T ss_pred EECCC
Confidence 98764
No 354
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.38 E-value=1.7 Score=38.20 Aligned_cols=96 Identities=24% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
..+|+|--+|+|.=++-++...+. .+|+..|++|..++.. +.......+..|+..+-.. ....
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~----~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~-------~~~~ 121 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV----VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE-------LHRA 121 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc----cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh-------cCCC
Confidence 669999999999999888877542 4899999999885441 1122333333444322111 2478
Q ss_pred ccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 114 FSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 114 ~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
||+|=.|+ -| .+ .-+++.+.+ .++.+|.|.++-
T Consensus 122 fd~IDiDP----FG--SP---------aPFlDaA~~------------------s~~~~G~l~vTA 154 (380)
T COG1867 122 FDVIDIDP----FG--SP---------APFLDAALR------------------SVRRGGLLCVTA 154 (380)
T ss_pred ccEEecCC----CC--CC---------chHHHHHHH------------------HhhcCCEEEEEe
Confidence 99997665 12 11 135555555 677799998864
No 355
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=82.91 E-value=4.3 Score=34.04 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=27.0
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVP 81 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~ 81 (186)
++.+||-.|||. |..+..+++.+ +. +|++++.++.+..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-----G~~~v~~~~~s~~~~~ 204 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-----GAAEIVATDLADAPLA 204 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHH
Confidence 788999888764 55666666665 34 7999988776543
No 356
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=82.67 E-value=5.5 Score=33.89 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=26.8
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKV 80 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i 80 (186)
...+++.+||=.|+|. |..+..+++.+ +. +|++++.++...
T Consensus 173 ~~~~~g~~vlI~g~g~vG~~~~~lak~~-----G~~~v~~~~~~~~~~ 215 (361)
T cd08231 173 GPVGAGDTVVVQGAGPLGLYAVAAAKLA-----GARRVIVIDGSPERL 215 (361)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHH
Confidence 3345788898887643 44445555554 45 899998777653
No 357
>PRK07576 short chain dehydrogenase; Provisional
Probab=82.59 E-value=5.9 Score=32.22 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++++|-.| |+|+++..+++.+.. .+.+|+.++.++..+.. .....++.++..|+++... ..+.+.....
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR--AGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 466788777 567788877776643 26789999987654322 1112356677888876431 1122221112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+++|+++.+..
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 47899998753
No 358
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.56 E-value=4.6 Score=35.10 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=49.4
Q ss_pred CCCCCEEEEEcccCChHHHHH-HHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEe-eecCCChhhHhhhCCCCCCc
Q 038391 37 IKPGSSVLDLGCAPGAWLQVA-CQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSA-DVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l-~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~-d~~~~~~~~l~~~~~~~~~~ 114 (186)
+++|.++.-+|+|.=+++... ++..+ .++++|||+++...+.++...-..++.. |......+.+.+++ ++.+
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~G----AsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmT--dgGv 263 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAG----ASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMT--DGGV 263 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcC----cccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHh--cCCc
Confidence 588999999999975555444 44443 4799999999999777554443444432 33332234555665 4677
Q ss_pred cEEEe
Q 038391 115 SVILS 119 (186)
Q Consensus 115 D~V~~ 119 (186)
|.-+-
T Consensus 264 DysfE 268 (375)
T KOG0022|consen 264 DYSFE 268 (375)
T ss_pred eEEEE
Confidence 87764
No 359
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.37 E-value=1 Score=31.92 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=43.3
Q ss_pred ccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEe
Q 038391 48 CAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILS 119 (186)
Q Consensus 48 cG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~ 119 (186)
||.|..+..+++.+.. .+..|+.+|.++..+...... .+.++.+|..+.. .+.+. .-.+++.|++
T Consensus 4 ~G~g~~~~~i~~~L~~--~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~--~l~~a--~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE--GGIDVVVIDRDPERVEELREE-GVEVIYGDATDPE--VLERA--GIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHH--HHHHT--TGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHh--CCCEEEEEECCcHHHHHHHhc-ccccccccchhhh--HHhhc--CccccCEEEE
Confidence 6778899999988765 134899999999886542222 2778899988654 23222 1257888887
No 360
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.19 E-value=7.9 Score=31.50 Aligned_cols=82 Identities=12% Similarity=0.031 Sum_probs=50.3
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCC---CCC---cCCCCCeEEEEeeecCCCh--hhHhhhCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVK---VPS---LHCDARVQTVSADVINLPS--NQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~---i~~---~~~~~~~~~~~~d~~~~~~--~~l~~~~~ 109 (186)
.++.+|-.|+++ ++++..+++.+-. .+.+|+.++.+... ++. .....++.+++.|+.+... ..+.....
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~--~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN--AGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH--CCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 467899999884 7889888888754 26788888654321 211 1112457778889887531 12222211
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
.-+++|+++.+..
T Consensus 84 ~~g~ld~lv~nag 96 (257)
T PRK08594 84 EVGVIHGVAHCIA 96 (257)
T ss_pred hCCCccEEEECcc
Confidence 1257999988753
No 361
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=82.14 E-value=3.5 Score=35.36 Aligned_cols=42 Identities=24% Similarity=0.477 Sum_probs=29.6
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
.++++.+||-+|+|+ |..+..+++.+ +. +|+++|.++...+.
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~-----G~~~Vi~~~~~~~~~~~ 224 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIA-----GASRIIGVDINEDKFEK 224 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHH
Confidence 467899999998754 44555566665 34 79999988766443
No 362
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.54 E-value=2.5 Score=34.27 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=49.4
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~ 113 (186)
.++.+|-.|+++ ++++..+++.+-. .|.+|+.++.+...... .....++.+++.|+++... ..++.....-+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~--~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD--QGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGK 83 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH--CCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 467888888875 6788888887754 26789988765321110 1112356778888876531 111222111257
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|+++.+..
T Consensus 84 iD~lv~nAg 92 (252)
T PRK06079 84 IDGIVHAIA 92 (252)
T ss_pred CCEEEEccc
Confidence 999998764
No 363
>PRK08264 short chain dehydrogenase; Validated
Probab=80.92 E-value=5.9 Score=31.33 Aligned_cols=77 Identities=19% Similarity=0.200 Sum_probs=50.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.+++||=.| |+|+.+..+++.+... +. +|+.++-++..+.. ...++.++..|+.+.. .+..+...-+.+|.|
T Consensus 5 ~~~~vlItG-gsg~iG~~la~~l~~~--G~~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~--~~~~~~~~~~~id~v 77 (238)
T PRK08264 5 KGKVVLVTG-ANRGIGRAFVEQLLAR--GAAKVYAAARDPESVTD--LGPRVVPLQLDVTDPA--SVAAAAEAASDVTIL 77 (238)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC--CcccEEEEecChhhhhh--cCCceEEEEecCCCHH--HHHHHHHhcCCCCEE
Confidence 356788888 4777888888776542 55 89999887765443 3346888889987653 222222112468999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 78 i~~ag 82 (238)
T PRK08264 78 VNNAG 82 (238)
T ss_pred EECCC
Confidence 88764
No 364
>PRK07454 short chain dehydrogenase; Provisional
Probab=80.79 E-value=11 Score=29.75 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=49.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
..+++|-.|+ +|+++..+++.+... +.+|+.++-++..... .....++.++..|+++... ..++......
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKA--GWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888885 678888888776542 5699999987654321 1123467788899887531 1112111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
++.|.++.+..
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 46899988653
No 365
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=80.60 E-value=7.2 Score=32.77 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=28.0
Q ss_pred CCCC--CEEEEEcc--cCChHHHHHHHHhCCCCCCC-eEEEEeCCCCCC
Q 038391 37 IKPG--SSVLDLGC--APGAWLQVACQSLGPLDNGG-SVVGIDVKKVKV 80 (186)
Q Consensus 37 ~~~~--~~vLDlGc--G~G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i 80 (186)
++++ .+||=.|+ |.|..+..+++.+ +. +|++++-+++..
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~-----G~~~Vi~~~~s~~~~ 193 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLL-----GCSRVVGICGSDEKC 193 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHc-----CCCEEEEEcCCHHHH
Confidence 5655 89999987 3466666677775 45 799998887654
No 366
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.55 E-value=0.79 Score=35.84 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=34.5
Q ss_pred CCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 110 KQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 110 ~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
.++++|+|++ -|...+..- +....+++++.+ +|||||.|-|.+-..
T Consensus 44 ~dns~d~iya--------eHvlEHlt~-~Eg~~alkechr------------------~Lrp~G~LriAvPdl 89 (185)
T COG4627 44 EDNSVDAIYA--------EHVLEHLTY-DEGTSALKECHR------------------FLRPGGKLRIAVPDL 89 (185)
T ss_pred CCcchHHHHH--------HHHHHHHhH-HHHHHHHHHHHH------------------HhCcCcEEEEEcCCc
Confidence 4689999987 455554333 445578888998 999999999987654
No 367
>PRK08267 short chain dehydrogenase; Provisional
Probab=80.33 E-value=11 Score=30.18 Aligned_cols=78 Identities=14% Similarity=0.176 Sum_probs=47.6
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc---CCCCCeEEEEeeecCCCh--hhHhhhCCC-CCCcc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL---HCDARVQTVSADVINLPS--NQVRALSPK-QKGFS 115 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~---~~~~~~~~~~~d~~~~~~--~~l~~~~~~-~~~~D 115 (186)
++|-.|++ |+++..+++.+.. .+.+|+.++.++..+... ....++.+++.|+.+... ..+.+.... .+++|
T Consensus 3 ~vlItGas-g~iG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAA--EGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 56667755 6677777776643 267999998776654321 113468888999987541 122222111 35789
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
.++.+..
T Consensus 80 ~vi~~ag 86 (260)
T PRK08267 80 VLFNNAG 86 (260)
T ss_pred EEEECCC
Confidence 9998764
No 368
>KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=79.71 E-value=1.1 Score=40.84 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=79.5
Q ss_pred hhHHhHHHHHHHcCCCC-CCC--EEEEEcccCChHHHHHHHHhCCCCCC----CeEEEEeCCCCC--------CC-C---
Q 038391 22 RSAFKLLQIQKQYKLIK-PGS--SVLDLGCAPGAWLQVACQSLGPLDNG----GSVVGIDVKKVK--------VP-S--- 82 (186)
Q Consensus 22 r~~~~l~~~~~~~~~~~-~~~--~vLDlGcG~G~~~~~l~~~~~~~~~~----~~v~gvDis~~~--------i~-~--- 82 (186)
.++-|+-|++..|.++. ++. .-+-+|=|||.+...+--.+...-+. .+=.+.-++|.. |. -
T Consensus 112 ~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r~k~~~~W~W~anTLNPY~E~n~~~~mi~DDr~I 191 (696)
T KOG3674|consen 112 KAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSRGKNMSYWKWGANTLNPYFENNSCFDMIIDDRHI 191 (696)
T ss_pred HHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhccCCccceeeeccCccCcccccchHHHHhccchhh
Confidence 34558999999988764 444 35789999998876554332110000 111222233321 10 0
Q ss_pred cCCCCCeEEE---EeeecCCCh-hhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCC
Q 038391 83 LHCDARVQTV---SADVINLPS-NQVRALSPKQKGFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVN 158 (186)
Q Consensus 83 ~~~~~~~~~~---~~d~~~~~~-~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (186)
+......-|- .||+..+.. .-+.+...-.+.+|+|.+|++.++.|.-.-....-..+.-.-+..+.+
T Consensus 192 ~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~--------- 262 (696)
T KOG3674|consen 192 RPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLAGTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALK--------- 262 (696)
T ss_pred hccccceeeCCCCCccHHHHHHHHHHHHHHHhhceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHH---------
Confidence 0111111111 244443332 122332223579999999998887776665554545555555666676
Q ss_pred CCCCCCCCcccccCcEEEEEEcc
Q 038391 159 NSDSSTDSGVLKPGGHLVIKLLE 181 (186)
Q Consensus 159 ~~~~~~~~~~LkpgG~lvi~~~~ 181 (186)
+|+.||.+++|+|.
T Consensus 263 ---------~L~~gG~filKmft 276 (696)
T KOG3674|consen 263 ---------LLRRGGRFILKMFT 276 (696)
T ss_pred ---------HHhcCCeehHHHHH
Confidence 99999999999874
No 369
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.00 E-value=10 Score=31.86 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=30.2
Q ss_pred CCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
..+++|.+||=.|++ .|..+..+++.+ |.+|++++-++...+
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-----G~~Vi~~~~~~~~~~ 190 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK-----GCYVVGSAGSDEKVD 190 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHHH
Confidence 346889999999872 356666677765 468999887776543
No 370
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.00 E-value=5.8 Score=33.24 Aligned_cols=41 Identities=29% Similarity=0.553 Sum_probs=27.1
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
.++++.+||..|+|. |..+..+++..+ ...|++++.++.+.
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g----~~~v~~~~~~~~~~ 205 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG----AARIIAVDSNPERL 205 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEeCCHHHH
Confidence 357788999877643 555666666652 13788887776553
No 371
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=78.98 E-value=5.5 Score=33.47 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=27.2
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVK 79 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~ 79 (186)
.++++.+||-.|+|. |..+..+++.. +.+ |++++-++..
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~-----G~~~v~~~~~~~~~ 196 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKIL-----GAKRVIAVDIDDEK 196 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEcCCHHH
Confidence 367888999998654 55666666665 355 8998877655
No 372
>PRK05993 short chain dehydrogenase; Provisional
Probab=78.88 E-value=9.1 Score=31.36 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=49.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-h-hHhhhCC-CCCCcc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-N-QVRALSP-KQKGFS 115 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~-~l~~~~~-~~~~~D 115 (186)
.+++||-.|+ +|+++..+++.+.. .+.+|++++-++..+.... ..++.++..|+++... . .+..... ..+.+|
T Consensus 3 ~~k~vlItGa-sggiG~~la~~l~~--~G~~Vi~~~r~~~~~~~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id 78 (277)
T PRK05993 3 MKRSILITGC-SSGIGAYCARALQS--DGWRVFATCRKEEDVAALE-AEGLEAFQLDYAEPESIAALVAQVLELSGGRLD 78 (277)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCCCcc
Confidence 3567887786 57788888877644 2679999998776543211 1246778888876431 1 1111110 124789
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
+++.+..
T Consensus 79 ~li~~Ag 85 (277)
T PRK05993 79 ALFNNGA 85 (277)
T ss_pred EEEECCC
Confidence 9998753
No 373
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=78.87 E-value=25 Score=27.11 Aligned_cols=39 Identities=10% Similarity=-0.044 Sum_probs=18.3
Q ss_pred CCCCEEEEEcccCChHHH-HHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQ-VACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~-~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
..|.+|.=+|+|..+.+. .++.. .+ ..-.+.+|.++...
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~-~~---~~I~~vvD~np~K~ 105 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGL-DN---DLIDYVVDDNPLKQ 105 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT---T---TTS--EEES-GGGT
T ss_pred HcCCEEEEECcchHHHHHHHHhCC-Cc---ceeEEEEeCChhhc
Confidence 357899999999876653 33332 11 23467889988774
No 374
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=78.38 E-value=5.7 Score=33.50 Aligned_cols=41 Identities=27% Similarity=0.571 Sum_probs=27.9
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVKV 80 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i 80 (186)
..++++.+||-.|+|. |..+..+++.+ +.+ |+.++-+++..
T Consensus 158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~-----G~~~v~~~~~~~~~~ 200 (343)
T cd05285 158 AGVRPGDTVLVFGAGPIGLLTAAVAKAF-----GATKVVVTDIDPSRL 200 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHH
Confidence 3467888998887654 55666666665 345 88887776553
No 375
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=78.03 E-value=14 Score=30.84 Aligned_cols=36 Identities=36% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
....||++|+|+|.-++.++... +.+|+--|+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~~~~ 121 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-----GAEVVLTDLPKVV 121 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-----cceeccCCchhhH
Confidence 34579999999997777777764 4788888887765
No 376
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.00 E-value=15 Score=29.37 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=50.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
++++||=.| |+|+++..+++++-.. +.+|+.++-++..+.. .....++.+++.|+.+... ..+.......
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQA--GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 467888888 4677888888876542 6799999887654322 1112347777888876431 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|.++.+..
T Consensus 86 ~~~d~li~~ag 96 (255)
T PRK07523 86 GPIDILVNNAG 96 (255)
T ss_pred CCCCEEEECCC
Confidence 46899998764
No 377
>PRK08324 short chain dehydrogenase; Validated
Probab=77.99 E-value=7.2 Score=36.81 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=49.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
+++.||-.|+ +|+++..+++.+... +.+|+.+|.++..+... ....++.++..|+++... ..+.......+
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~--Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAE--GACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3567777776 466777777776432 57999999887654321 011367788888876531 11221111124
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|+|+.+..
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 7999998764
No 378
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=77.98 E-value=22 Score=30.17 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=47.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCChhhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPSNQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~ 114 (186)
++.+||-.| |+|+++.++++.+-.. +.+|++++..+..... .....++.++.+|+.+.. .+..+.. ..++
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~--~~~~~~~-~~~~ 76 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLEL--GAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAA--KLRKAIA-EFKP 76 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHC--CCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHH--HHHHHHh-hcCC
Confidence 356777666 6788888888876542 5689999876654221 111235677888887643 3333321 2357
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|.|+-...
T Consensus 77 d~vih~A~ 84 (349)
T TIGR02622 77 EIVFHLAA 84 (349)
T ss_pred CEEEECCc
Confidence 98886543
No 379
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=77.78 E-value=8.2 Score=33.06 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=29.7
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVPS 82 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~~ 82 (186)
..+++|.+||-.|+|+ |..+..+++.+ +. +|+++|.+++.++.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~-----G~~~vi~~~~~~~~~~~ 227 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIR-----GASRIIGVDLNPSKFEQ 227 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHH
Confidence 3467899999998753 44445555554 34 79999998877544
No 380
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=77.73 E-value=0.72 Score=41.94 Aligned_cols=100 Identities=24% Similarity=0.180 Sum_probs=64.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-------CCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-------HCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-------~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+-+|||.=|++|.-++-.+...+. -.+|++.|.++..++.. .....+...+.|+..+=.. + .....
T Consensus 110 ~l~vLealsAtGlrslRya~El~~---v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~---~-~~~~~ 182 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPG---VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE---H-PMVAK 182 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcc---hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh---c-ccccc
Confidence 457999999999999999988864 56899999999987631 1112233333443321100 0 01247
Q ss_pred CccEEEeCCCCCCCCCcccchHHHHHHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEE
Q 038391 113 GFSVILSDMCPSVSGITTKDAALSVELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 113 ~~D~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.||+|=.|+ -|.. ..+++-+.+ .++.||.|.++.
T Consensus 183 ~FDvIDLDP----yGs~-----------s~FLDsAvq------------------av~~gGLL~vT~ 216 (525)
T KOG1253|consen 183 FFDVIDLDP----YGSP-----------SPFLDSAVQ------------------AVRDGGLLCVTC 216 (525)
T ss_pred ccceEecCC----CCCc-----------cHHHHHHHH------------------HhhcCCEEEEEe
Confidence 899998875 1211 146666666 788899999864
No 381
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.57 E-value=7 Score=32.17 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=47.6
Q ss_pred CCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCCC---CCCC-cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKKV---KVPS-LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~---~i~~-~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
.++.+|=.|++ +++++..+++.+-. .|.+|+.+.-++. .+.. .........++.|+++... ..+......-
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~--~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRA--AGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHH--CCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence 45688888987 47888888888754 2678887754321 1111 1111224567788876431 1112221123
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+..|+++.+..
T Consensus 87 g~iD~lv~nAG 97 (272)
T PRK08159 87 GKLDFVVHAIG 97 (272)
T ss_pred CCCcEEEECCc
Confidence 57999999864
No 382
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=77.33 E-value=7.3 Score=33.37 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=27.6
Q ss_pred cCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 34 YKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 34 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
....++|.+||-.|+|+ |..+..+++.+ +.+|+.++.++..
T Consensus 175 ~~~~~~g~~vlV~G~G~vG~~av~~Ak~~-----G~~vi~~~~~~~~ 216 (357)
T PLN02514 175 FGLKQSGLRGGILGLGGVGHMGVKIAKAM-----GHHVTVISSSDKK 216 (357)
T ss_pred cccCCCCCeEEEEcccHHHHHHHHHHHHC-----CCeEEEEeCCHHH
Confidence 33346788999887654 55555666665 4678888877654
No 383
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=77.11 E-value=13 Score=32.34 Aligned_cols=37 Identities=19% Similarity=0.102 Sum_probs=26.3
Q ss_pred CCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 38 KPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 38 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
+++.+||-.|+|+ |..+..+++.+ +.+|++++.++..
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~-----Ga~Vi~~~~~~~~ 214 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAF-----GLRVTVISRSSEK 214 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHc-----CCeEEEEeCChHH
Confidence 5788999888864 55556666665 4689999887543
No 384
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=77.11 E-value=10 Score=32.53 Aligned_cols=81 Identities=30% Similarity=0.363 Sum_probs=46.0
Q ss_pred HHHHHcCCCCCCCEEEEEcccC--ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcC---CCCCeEEEEeeecCCChhh
Q 038391 29 QIQKQYKLIKPGSSVLDLGCAP--GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLH---CDARVQTVSADVINLPSNQ 103 (186)
Q Consensus 29 ~~~~~~~~~~~~~~vLDlGcG~--G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~---~~~~~~~~~~d~~~~~~~~ 103 (186)
..+..+..+++|++||-.|+.. |.++..+++.. +.+++++--+++..+... .+.-+.+...|+ ...
T Consensus 132 ~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~-----G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~----~~~ 202 (326)
T COG0604 132 LALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKAL-----GATVVAVVSSSEKLELLKELGADHVINYREEDF----VEQ 202 (326)
T ss_pred HHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHhcCCCEEEcCCcccH----HHH
Confidence 3344455578899999998654 56777777776 347777777665543211 111122222221 123
Q ss_pred HhhhCCCCCCccEEEe
Q 038391 104 VRALSPKQKGFSVILS 119 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~ 119 (186)
+.++. .+..+|+|+.
T Consensus 203 v~~~t-~g~gvDvv~D 217 (326)
T COG0604 203 VRELT-GGKGVDVVLD 217 (326)
T ss_pred HHHHc-CCCCceEEEE
Confidence 34444 2457999997
No 385
>PRK06180 short chain dehydrogenase; Provisional
Probab=77.09 E-value=18 Score=29.52 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=47.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCcc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGFS 115 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D 115 (186)
++.||-.|++ |+++..+++++-. .+.+|++++-++..+.. .....++.++..|+.+... ..+......-+.+|
T Consensus 4 ~~~vlVtGas-ggiG~~la~~l~~--~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d 80 (277)
T PRK06180 4 MKTWLITGVS-SGFGRALAQAALA--AGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPID 80 (277)
T ss_pred CCEEEEecCC-ChHHHHHHHHHHh--CcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 4567877764 5678888877643 26789999987765432 1122357777888876531 11111111124689
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
.|+.+..
T Consensus 81 ~vv~~ag 87 (277)
T PRK06180 81 VLVNNAG 87 (277)
T ss_pred EEEECCC
Confidence 9988754
No 386
>PRK06701 short chain dehydrogenase; Provisional
Probab=77.06 E-value=7.9 Score=32.19 Aligned_cols=80 Identities=9% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC-CCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK-VPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~-i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
++++|-.|+ +|+++..+++++-.. +.+|+.++.+... +.. .....++.++..|+.+... ..+.......
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 567877775 566777777776431 6789988877532 111 1112357788888876431 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 123 ~~iD~lI~~Ag 133 (290)
T PRK06701 123 GRLDILVNNAA 133 (290)
T ss_pred CCCCEEEECCc
Confidence 47899987653
No 387
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=77.02 E-value=26 Score=29.12 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=22.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCC-CCCeEEEEeCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLD-NGGSVVGIDVKKVK 79 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~-~~~~v~gvDis~~~ 79 (186)
.+.|++.||-.|+.+..++..+...+ ..-+++++|-=+.+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~ 115 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGF 115 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSS
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCC
Confidence 46899999999987766654432111 24579999955433
No 388
>PRK08643 acetoin reductase; Validated
Probab=76.73 E-value=18 Score=28.91 Aligned_cols=80 Identities=18% Similarity=0.118 Sum_probs=47.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
++.+|=.| |+|+++..+++.+-.. +.+|+.++-++..... .....++.++..|+.+... ..+.......+
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVED--GFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 34666666 4566787777776432 6799999987654322 1112456778888877541 11122111124
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
++|.++.+..
T Consensus 79 ~id~vi~~ag 88 (256)
T PRK08643 79 DLNVVVNNAG 88 (256)
T ss_pred CCCEEEECCC
Confidence 7899988764
No 389
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=76.47 E-value=15 Score=30.50 Aligned_cols=41 Identities=27% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 35 KLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
..+++|.+||=.|++ .|..+..+++.. +.+|++++-+++..
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~-----G~~vi~~~~s~~~~ 181 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK-----GCKVIGCAGSDDKV 181 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEeCCHHHH
Confidence 346789999988853 355666677765 56899998877653
No 390
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=76.38 E-value=34 Score=26.56 Aligned_cols=72 Identities=8% Similarity=-0.115 Sum_probs=44.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
++.+|+=|||=+-+....- ... ++.+++-.|++...-.. ..+ .|..-|..... .+.... .++||+|+
T Consensus 25 ~~~~iaclstPsl~~~l~~--~~~---~~~~~~Lle~D~RF~~~---~~~-~F~fyD~~~p~--~~~~~l--~~~~d~vv 91 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKK--ESK---PRIQSFLLEYDRRFEQF---GGD-EFVFYDYNEPE--ELPEEL--KGKFDVVV 91 (162)
T ss_pred CCCEEEEEeCcHHHHHHHh--hcC---CCccEEEEeecchHHhc---CCc-ceEECCCCChh--hhhhhc--CCCceEEE
Confidence 4679999998765544433 111 25789999999876331 112 45555655432 222221 46999999
Q ss_pred eCCCC
Q 038391 119 SDMCP 123 (186)
Q Consensus 119 ~d~~~ 123 (186)
+|++.
T Consensus 92 ~DPPF 96 (162)
T PF10237_consen 92 IDPPF 96 (162)
T ss_pred ECCCC
Confidence 99873
No 391
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=76.04 E-value=0.76 Score=41.19 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=36.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.+++|+.|-|++||.|-+...++.. +++|++.|..+.+++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK------~crV~aNDLNpesik 285 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKK------GCRVYANDLNPESIK 285 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhc------CcEEEecCCCHHHHH
Confidence 5689999999999999999999987 699999999999853
No 392
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=75.66 E-value=5.8 Score=34.01 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=29.6
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.++++.+||-.|+|. |..+..+++..+. ..|+++|.++....
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~----~~v~~~~~~~~k~~ 225 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGC----TTIIAVDIVDSRLE 225 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CeEEEEeCCHHHHH
Confidence 357788999888754 5566667776532 36999998887644
No 393
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=75.40 E-value=11 Score=32.47 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=67.3
Q ss_pred CEEEEEcccCChHHHHHHHHhC------C----------CCCCCeEEEEeCCCCC---------CCC-------------
Q 038391 41 SSVLDLGCAPGAWLQVACQSLG------P----------LDNGGSVVGIDVKKVK---------VPS------------- 82 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~------~----------~~~~~~v~gvDis~~~---------i~~------------- 82 (186)
.+||-||-|.|.=...++..+. . ..++.+|..|||.+-. +..
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 5899999999877766666660 0 0113589999998833 111
Q ss_pred ---cCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCCCCCCCCCcccchHHH--HHHHHHHHHHHcCCcccCCCC
Q 038391 83 ---LHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDMCPSVSGITTKDAALS--VELGMRAVDLALGPAALASPV 157 (186)
Q Consensus 83 ---~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 157 (186)
....-+++|.+.|+.......+..+.. ....++|.. ....+..-+ +...-.++...-.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~-~~~~~LITL--------lFTlNELfs~s~~kTt~FLl~Lt~-------- 230 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLG-PPSPDLITL--------LFTLNELFSTSISKTTKFLLRLTD-------- 230 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhc-cchhHHHHH--------HHHHHHHHhcChHHHHHHHHHHHh--------
Confidence 112246899999999887665555532 124666643 222222222 2223355555665
Q ss_pred CCCCCCCCCcccccCcEEEEEE
Q 038391 158 NNSDSSTDSGVLKPGGHLVIKL 179 (186)
Q Consensus 158 ~~~~~~~~~~~LkpgG~lvi~~ 179 (186)
.++||-.|.|.-
T Consensus 231 ----------~~~~GslLLVvD 242 (315)
T PF11312_consen 231 ----------ICPPGSLLLVVD 242 (315)
T ss_pred ----------hcCCCcEEEEEc
Confidence 888888887753
No 394
>PRK06128 oxidoreductase; Provisional
Probab=75.34 E-value=11 Score=31.44 Aligned_cols=80 Identities=9% Similarity=0.084 Sum_probs=45.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC--CCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK--VPS-----LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~--i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
++++|-.|+ +|+++..+++.+-.. +.+|+.+...... ... .....++.++..|+.+... ..+......
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFARE--GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHc--CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 567888885 566788888776531 5688776654332 110 1122356777888876431 111111111
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
-+.+|+++.+..
T Consensus 132 ~g~iD~lV~nAg 143 (300)
T PRK06128 132 LGGLDILVNIAG 143 (300)
T ss_pred hCCCCEEEECCc
Confidence 247899998764
No 395
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=75.16 E-value=7.2 Score=39.39 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=42.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
.+..+||+|+||=.-...+.- + ...|+.+|+-|-.-.-........|++.|....... ....+|.+.
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP---~---~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~-------~~~~~D~vt 888 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIP---P---DTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWW-------NGTPFDAVT 888 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS----T---TSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGG-------CC---SEEE
T ss_pred CcceEEEccCCccceeeeccC---C---CCceEEEecCCcccccchhhhcceeeeeccccceeE-------ecCCCCEEE
Confidence 367999999999654443333 2 578999999987755555557789999999877654 467999998
Q ss_pred e
Q 038391 119 S 119 (186)
Q Consensus 119 ~ 119 (186)
|
T Consensus 889 a 889 (1289)
T PF06016_consen 889 A 889 (1289)
T ss_dssp E
T ss_pred E
Confidence 8
No 396
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=74.95 E-value=4.6 Score=32.78 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=29.5
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~ 81 (186)
.++++.+||-.|||. |..+..+++.+ +.+ |++++.+++...
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~-----g~~~vi~~~~~~~~~~ 136 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAA-----GAREVVGVDPDAARRE 136 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCcEEEECCCHHHHH
Confidence 467888999888765 55666667765 355 999998776643
No 397
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.92 E-value=11 Score=30.66 Aligned_cols=82 Identities=21% Similarity=0.094 Sum_probs=45.0
Q ss_pred CCCEEEEEcccCC-hHHHHHHHHhCCCCCCCeEEEEeCCCCC---CCC-cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPG-AWLQVACQSLGPLDNGGSVVGIDVKKVK---VPS-LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G-~~~~~l~~~~~~~~~~~~v~gvDis~~~---i~~-~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
.++.+|=-|++.| +++..+++.+-. .+.+|+..+-++.. +.. ........+++.|+++... ..++.....-
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~--~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKK--HGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHH--cCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888888775 577777766543 16788888765321 111 1111122345788877531 1122221112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.++.
T Consensus 85 g~iDilVnnag 95 (260)
T PRK06603 85 GSFDFLLHGMA 95 (260)
T ss_pred CCccEEEEccc
Confidence 57999998764
No 398
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=74.83 E-value=6.1 Score=33.16 Aligned_cols=40 Identities=23% Similarity=0.456 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
.++++.+||-.|+|. |..+..+++.+ +.+|+++.-+++..
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~-----g~~v~~~~~s~~~~ 196 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKAR-----GARVIVVDIDDERL 196 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCeEEEECCCHHHH
Confidence 467888999998653 55666666665 57899987776553
No 399
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=74.68 E-value=13 Score=25.47 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCCCCEEEEEcccCCh-HHHHHHHHhCCCCCCCeEEEEeCCC
Q 038391 37 IKPGSSVLDLGCAPGA-WLQVACQSLGPLDNGGSVVGIDVKK 77 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~-~~~~l~~~~~~~~~~~~v~gvDis~ 77 (186)
++-.++||-+||.+|+ ++..++..++. +...+||-+..
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~---gA~TiGV~fEk 74 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGA---GADTIGVSFEK 74 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC-----EEEEEE---
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcC---CCCEEEEeecc
Confidence 4334899999999994 56667777765 67888886654
No 400
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=74.62 E-value=8.5 Score=32.05 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCCCCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.++++.+||-+||| .|..+..+++.. +.+|++++-++...+
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~-----G~~v~~~~~~~~~~~ 200 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAM-----GFETVAITRSPDKRE 200 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCHHHHH
Confidence 46788899999876 355555556654 468999988877643
No 401
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.36 E-value=8.6 Score=31.75 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=48.4
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCC---CCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKV---KVPS--LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~---~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
.++.+|=.|+++ ++++..+++.+-.. |.+|+.++.+.. .+.. ...... .+++.|+++... ..+......
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQ--GAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 367888889874 67888888776542 678998887642 1111 111122 467788887531 112222112
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
.+++|+++.+..
T Consensus 81 ~g~iDilVnnAG 92 (274)
T PRK08415 81 LGKIDFIVHSVA 92 (274)
T ss_pred cCCCCEEEECCc
Confidence 357999999864
No 402
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=74.18 E-value=13 Score=30.01 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=44.9
Q ss_pred cccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEEEeCC
Q 038391 47 GCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 47 GcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V~~d~ 121 (186)
=|.+|..+..+++..... |-+|++|=-++.++... ..++.++.|+.++.. ..+ ..||.|++..
T Consensus 6 IgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l-------~g~DaVIsA~ 70 (211)
T COG2910 6 IGASGKAGSRILKEALKR--GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDL-------AGHDAVISAF 70 (211)
T ss_pred EecCchhHHHHHHHHHhC--CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhh-------cCCceEEEec
Confidence 367888888877654321 56899998888886543 457888999988764 322 4799999854
No 403
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=73.96 E-value=51 Score=27.44 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=48.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~ 111 (186)
.+++||-.| |+|+++..+++.+-.. +.+|+++..++..... .....++.++.+|+.+.. .+..+.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~--~~~~~~--- 75 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFR--GYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEG--SFELAI--- 75 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHC--CCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCch--HHHHHH---
Confidence 356788777 6789999999876542 5688887666543221 111246788889988754 232332
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
..+|.|+..+.
T Consensus 76 ~~~d~vih~A~ 86 (325)
T PLN02989 76 DGCETVFHTAS 86 (325)
T ss_pred cCCCEEEEeCC
Confidence 25898887654
No 404
>PRK06482 short chain dehydrogenase; Provisional
Probab=73.90 E-value=21 Score=28.89 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=47.7
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccE
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGFSV 116 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~ 116 (186)
+++|-.|+ +|+++..+++++-. .+.+|+.++-++..+.. .....++.+++.|+.+... ..+.+.....+.+|.
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~--~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLA--RGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDV 79 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 35676665 67888888877654 25689998877654332 1112467888899887531 112221111246899
Q ss_pred EEeCCC
Q 038391 117 ILSDMC 122 (186)
Q Consensus 117 V~~d~~ 122 (186)
|+.+..
T Consensus 80 vi~~ag 85 (276)
T PRK06482 80 VVSNAG 85 (276)
T ss_pred EEECCC
Confidence 988654
No 405
>PTZ00357 methyltransferase; Provisional
Probab=73.76 E-value=5.5 Score=38.25 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=47.3
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC----C----cCC-------CCCeEEEEeeecCCChhh---
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP----S----LHC-------DARVQTVSADVINLPSNQ--- 103 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~----~----~~~-------~~~~~~~~~d~~~~~~~~--- 103 (186)
.|+-+|+|-|-+-....+.....+-..+|++||.++..+. . ... ..+++++..|+++.....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 4889999999766554444321111468999999966421 1 111 345899999999874320
Q ss_pred HhhhCCCCCCccEEEeC
Q 038391 104 VRALSPKQKGFSVILSD 120 (186)
Q Consensus 104 l~~~~~~~~~~D~V~~d 120 (186)
....+..-+++|+||+-
T Consensus 783 s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSE 799 (1072)
T ss_pred cccccccccccceehHh
Confidence 00011112489999984
No 406
>PRK08177 short chain dehydrogenase; Provisional
Probab=73.74 E-value=9.2 Score=30.12 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=46.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCC-hhhHhhhCCCCCCccEEEeC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLP-SNQVRALSPKQKGFSVILSD 120 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~-~~~l~~~~~~~~~~D~V~~d 120 (186)
++|=.|+ +|+++..+++.+... +.+|++++.++..........++.+.+.|+.+.. ...+.... ..+.+|+|+.+
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~-~~~~id~vi~~ 78 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLER--GWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRL-QGQRFDLLFVN 78 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhC--CCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHh-hcCCCCEEEEc
Confidence 4665665 677888877776542 5799999988765432112235677778877643 11222222 23579999986
Q ss_pred C
Q 038391 121 M 121 (186)
Q Consensus 121 ~ 121 (186)
.
T Consensus 79 a 79 (225)
T PRK08177 79 A 79 (225)
T ss_pred C
Confidence 5
No 407
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.63 E-value=12 Score=29.47 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=47.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
++++||-.|++ |+++..+++.+.. .+.+|++++-++..... .....++.++..|+.+... ..++.....-+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALK--EGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 36788888885 6688888877643 26799999987764322 1112357788888876431 11111110124
Q ss_pred CccEEEeCC
Q 038391 113 GFSVILSDM 121 (186)
Q Consensus 113 ~~D~V~~d~ 121 (186)
.+|.++.+.
T Consensus 81 ~id~ii~~a 89 (238)
T PRK05786 81 AIDGLVVTV 89 (238)
T ss_pred CCCEEEEcC
Confidence 578888754
No 408
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=73.57 E-value=3.3 Score=35.52 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=14.4
Q ss_pred ccccCcEEEEEEccC
Q 038391 168 VLKPGGHLVIKLLES 182 (186)
Q Consensus 168 ~LkpgG~lvi~~~~~ 182 (186)
+|+|||+|+|-.||+
T Consensus 229 ~L~~gGrl~VISfHS 243 (305)
T TIGR00006 229 LLAPGGRLSIISFHS 243 (305)
T ss_pred HhcCCCEEEEEecCc
Confidence 999999999999997
No 409
>PRK07326 short chain dehydrogenase; Provisional
Probab=73.57 E-value=12 Score=29.36 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=48.1
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc----CCCCCeEEEEeeecCCCh--hhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL----HCDARVQTVSADVINLPS--NQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~----~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~ 113 (186)
+..||-.| |+|.++..+++.+-. .+.+|++++.++...... ....++.++++|+.+... ..+.+.....+.
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLA--EGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHH--CCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56788888 477888888877643 156899998776543210 111467788888876431 111111111247
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|.|+....
T Consensus 83 ~d~vi~~ag 91 (237)
T PRK07326 83 LDVLIANAG 91 (237)
T ss_pred CCEEEECCC
Confidence 899987653
No 410
>PRK07985 oxidoreductase; Provisional
Probab=73.17 E-value=15 Score=30.61 Aligned_cols=81 Identities=11% Similarity=0.082 Sum_probs=46.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC--CCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK--VPS-----LHCDARVQTVSADVINLPS--NQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~--i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~ 109 (186)
+++++|-.|+ +|+++..+++.+-. .|.+|+.++.+... .+. .....++.++..|+.+... ..+.....
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~--~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYAR--EGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHH--CCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3568888885 46677777777654 26788887654322 111 1112356778888876431 11122211
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
.-+.+|.++.+..
T Consensus 125 ~~g~id~lv~~Ag 137 (294)
T PRK07985 125 ALGGLDIMALVAG 137 (294)
T ss_pred HhCCCCEEEECCC
Confidence 2257899988654
No 411
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=72.96 E-value=15 Score=33.07 Aligned_cols=39 Identities=21% Similarity=0.235 Sum_probs=27.2
Q ss_pred CCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 38 KPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 38 ~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
-.|++|+-+|+|. |......++.+ +.+|+.+|+++....
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga~ViV~d~dp~ra~ 249 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGL-----GARVIVTEVDPICAL 249 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC-----CCEEEEEcCCchhhH
Confidence 4789999999986 33333333443 579999999987743
No 412
>PRK06057 short chain dehydrogenase; Provisional
Probab=72.82 E-value=3.6 Score=33.11 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=47.5
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSV 116 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~ 116 (186)
++++||-.|++ |+++..+++.+... +.+|++++.++.............+++.|+.+... ..+.......+.+|.
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 82 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAE--GATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDI 82 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46789988885 56788888776532 67999999876543221111112467788876531 112211111247899
Q ss_pred EEeCCC
Q 038391 117 ILSDMC 122 (186)
Q Consensus 117 V~~d~~ 122 (186)
|+.+..
T Consensus 83 vi~~ag 88 (255)
T PRK06057 83 AFNNAG 88 (255)
T ss_pred EEECCC
Confidence 888653
No 413
>PRK12744 short chain dehydrogenase; Provisional
Probab=72.80 E-value=20 Score=28.79 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=46.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC----CCC-----cCCCCCeEEEEeeecCCCh--hhHhhhC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK----VPS-----LHCDARVQTVSADVINLPS--NQVRALS 108 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~----i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~ 108 (186)
++++|=.|+ +|+++..+++.+.. .+.+|+.++..... ... .....++.+++.|+.+... ..+.+..
T Consensus 8 ~k~vlItGa-~~gIG~~~a~~l~~--~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAGG-AKNLGGLIARDLAA--QGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEECC-CchHHHHHHHHHHH--CCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence 567887785 56688888877754 25687777654322 110 1112367788899876531 1122221
Q ss_pred CCCCCccEEEeCCC
Q 038391 109 PKQKGFSVILSDMC 122 (186)
Q Consensus 109 ~~~~~~D~V~~d~~ 122 (186)
...+.+|+++.+..
T Consensus 85 ~~~~~id~li~~ag 98 (257)
T PRK12744 85 AAFGRPDIAINTVG 98 (257)
T ss_pred HhhCCCCEEEECCc
Confidence 11247899998764
No 414
>PLN02494 adenosylhomocysteinase
Probab=72.68 E-value=16 Score=33.40 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHcCCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 30 IQKQYKLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 30 ~~~~~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
+......+-.|++|+-+|+|. |......++.+ +.+|+.+|.++...
T Consensus 244 i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-----Ga~VIV~e~dp~r~ 290 (477)
T PLN02494 244 LMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-----GARVIVTEIDPICA 290 (477)
T ss_pred HHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-----CCEEEEEeCCchhh
Confidence 334334345689999999996 43334444444 57999999998653
No 415
>PRK07806 short chain dehydrogenase; Provisional
Probab=72.67 E-value=21 Score=28.24 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=45.7
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC-CCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK-VPS-----LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~-i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
+++++|-.|+ +|+++..+++.+-. .+.+|++++-+... ... .....++.+++.|+.+... ..+......
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~--~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAG--AGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHH--CCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3568888885 45678877776643 15689888765421 111 1112356778888876531 111111111
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
-+.+|.++.+..
T Consensus 82 ~~~~d~vi~~ag 93 (248)
T PRK07806 82 FGGLDALVLNAS 93 (248)
T ss_pred CCCCcEEEECCC
Confidence 246898887653
No 416
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.66 E-value=20 Score=28.30 Aligned_cols=80 Identities=14% Similarity=0.178 Sum_probs=48.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
+.++|-.|+ +|+++..+++++-. .+.+|+.++.++..... .....++.+++.|+++... ..+......-+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~--~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAK--EGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 467888884 77888888877643 25799999887654221 1122367788888876531 11111111124
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|.|+.+..
T Consensus 84 ~id~vi~~ag 93 (239)
T PRK07666 84 SIDILINNAG 93 (239)
T ss_pred CccEEEEcCc
Confidence 7899998764
No 417
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=72.65 E-value=8.2 Score=31.36 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=48.5
Q ss_pred CCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCC------CCC-cCCCCCeEEEEeeecCCCh--hhHhhhC
Q 038391 39 PGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVK------VPS-LHCDARVQTVSADVINLPS--NQVRALS 108 (186)
Q Consensus 39 ~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~------i~~-~~~~~~~~~~~~d~~~~~~--~~l~~~~ 108 (186)
.++.+|=.|++ +++++..+++.+.. .+.+|+.++.+... +.. .....+..+++.|+++... ..+....
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA--AGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK 82 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH--CCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence 46788999985 68899999988754 26788777654321 111 1111235677788876531 1111211
Q ss_pred CCCCCccEEEeCCC
Q 038391 109 PKQKGFSVILSDMC 122 (186)
Q Consensus 109 ~~~~~~D~V~~d~~ 122 (186)
..-+.+|+++.+..
T Consensus 83 ~~~g~iD~lv~nag 96 (258)
T PRK07370 83 QKWGKLDILVHCLA 96 (258)
T ss_pred HHcCCCCEEEEccc
Confidence 11257999998764
No 418
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=72.22 E-value=28 Score=28.44 Aligned_cols=52 Identities=23% Similarity=0.211 Sum_probs=39.1
Q ss_pred EEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCC
Q 038391 43 VLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINL 99 (186)
Q Consensus 43 vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~ 99 (186)
||-.|+ +|+++.++++++.+. +.+|+++|-+........ ..+.++.+|..+.
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~--~~~~~~~~d~~~~ 54 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAA--GHDVRGLDRLRDGLDPLL--SGVEFVVLDLTDR 54 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhC--CCeEEEEeCCCccccccc--cccceeeecccch
Confidence 777777 999999999998642 569999998877654322 4577788887664
No 419
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.16 E-value=17 Score=29.65 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=29.5
Q ss_pred CCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 35 KLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
..++++.+||=.|++ .|..+..+++.. +.+|+++..++...
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~-----g~~v~~~~~~~~~~ 180 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKAL-----GATVTATTRSPERA 180 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHc-----CCEEEEEeCCHHHH
Confidence 346788999988873 466667777775 46899988777553
No 420
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=71.54 E-value=33 Score=32.08 Aligned_cols=78 Identities=15% Similarity=0.044 Sum_probs=49.5
Q ss_pred CCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--------------cCCCCCeEEEEeeecCCChh
Q 038391 37 IKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--------------LHCDARVQTVSADVINLPSN 102 (186)
Q Consensus 37 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--------------~~~~~~~~~~~~d~~~~~~~ 102 (186)
.+.|+.||-.|+ +|+++..+++++-. .|.+|++++-+...+.. .....++.++.+|+.+..
T Consensus 77 ~~~gKvVLVTGA-TGgIG~aLAr~LLk--~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e-- 151 (576)
T PLN03209 77 TKDEDLAFVAGA-TGKVGSRTVRELLK--LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD-- 151 (576)
T ss_pred cCCCCEEEEECC-CCHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH--
Confidence 346777777776 57788888877643 15789998877655321 001235788899987643
Q ss_pred hHhhhCCCCCCccEEEeCCC
Q 038391 103 QVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 103 ~l~~~~~~~~~~D~V~~d~~ 122 (186)
.+.... +.+|+||+.+.
T Consensus 152 sI~~aL---ggiDiVVn~AG 168 (576)
T PLN03209 152 QIGPAL---GNASVVICCIG 168 (576)
T ss_pred HHHHHh---cCCCEEEEccc
Confidence 232222 46899988653
No 421
>PRK08251 short chain dehydrogenase; Provisional
Probab=71.53 E-value=31 Score=27.31 Aligned_cols=80 Identities=10% Similarity=0.095 Sum_probs=49.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh--hhHhhhCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS--NQVRALSPK 110 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~--~~l~~~~~~ 110 (186)
++++|-.| |+|+++..+++++-.. +.+|+.++-++..+.. .....++.+++.|+.+... ..+..+...
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAK--GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34677777 5678888888877542 5689999887755322 1113467888899887531 111222112
Q ss_pred CCCccEEEeCCC
Q 038391 111 QKGFSVILSDMC 122 (186)
Q Consensus 111 ~~~~D~V~~d~~ 122 (186)
-+.+|.++.+..
T Consensus 79 ~~~id~vi~~ag 90 (248)
T PRK08251 79 LGGLDRVIVNAG 90 (248)
T ss_pred cCCCCEEEECCC
Confidence 246899988764
No 422
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=71.14 E-value=30 Score=29.18 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=46.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC---CcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP---SLHCDARVQTVSADVINLPSNQVRALSPKQKGFSV 116 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~---~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~ 116 (186)
+.+||-.|+ +|+++..+++.+-..+++.+|+++|-+..... ......++.++.+|+.+.. .+.... ..+|.
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~--~l~~~~---~~iD~ 77 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKE--RLTRAL---RGVDY 77 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHH--HHHHHH---hcCCE
Confidence 567776665 68899998887643211257888886544311 1111246788899988653 333332 25899
Q ss_pred EEeCCC
Q 038391 117 ILSDMC 122 (186)
Q Consensus 117 V~~d~~ 122 (186)
|+..+.
T Consensus 78 Vih~Ag 83 (324)
T TIGR03589 78 VVHAAA 83 (324)
T ss_pred EEECcc
Confidence 987553
No 423
>PRK06197 short chain dehydrogenase; Provisional
Probab=71.12 E-value=29 Score=28.76 Aligned_cols=81 Identities=17% Similarity=0.112 Sum_probs=48.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCCh--hhHhhhCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPS--NQVRALSP 109 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~--~~l~~~~~ 109 (186)
++++||-.|+ +|+++..+++.+-.. +.+|+.++-++..... .....++.+++.|+.+... ..+.++..
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~--G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAK--GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 4667786665 567888888766532 5688888776544221 1112457788889887541 11222221
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
.-+.+|+++.++.
T Consensus 92 ~~~~iD~li~nAg 104 (306)
T PRK06197 92 AYPRIDLLINNAG 104 (306)
T ss_pred hCCCCCEEEECCc
Confidence 1247999998764
No 424
>PRK08263 short chain dehydrogenase; Provisional
Probab=71.05 E-value=26 Score=28.49 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=47.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCcc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGFS 115 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D 115 (186)
++.||-.| |+|+++..+++.+-. .+.+|+.++.++..+.. .....++.+++.|+.+... ..+......-+.+|
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 79 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALE--RGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLD 79 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 34677777 467788888877643 15789999887655432 1122356777888876431 11121111124789
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
.|+.+..
T Consensus 80 ~vi~~ag 86 (275)
T PRK08263 80 IVVNNAG 86 (275)
T ss_pred EEEECCC
Confidence 9988654
No 425
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=70.90 E-value=2.1 Score=35.44 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=55.6
Q ss_pred HHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCC
Q 038391 27 LLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLP 100 (186)
Q Consensus 27 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~ 100 (186)
+.+.++.++ .-+|.+-+|..-|.|+.|..+.+... ..++|++|-.|..-..+ ....++.-+.++++...
T Consensus 32 ~devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~s----e~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~ 106 (303)
T KOG2782|consen 32 LDEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHS----ELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIK 106 (303)
T ss_pred hhhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCc----HhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHH
Confidence 445555555 45688999999999999999999864 47999999998662211 11122222334443322
Q ss_pred hhhHhhhCCCCCCccEEEeCCC
Q 038391 101 SNQVRALSPKQKGFSVILSDMC 122 (186)
Q Consensus 101 ~~~l~~~~~~~~~~D~V~~d~~ 122 (186)
..+.+....+.++|.|+.|..
T Consensus 107 -~l~~~~gl~~~~vDGiLmDlG 127 (303)
T KOG2782|consen 107 -SLIADTGLLDVGVDGILMDLG 127 (303)
T ss_pred -HHHHHhCCCcCCcceEEeecC
Confidence 122222234678888877653
No 426
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=70.74 E-value=12 Score=32.95 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=32.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCC----CCCeEEEEeCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLD----NGGSVVGIDVKKVKV 80 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~----~~~~v~gvDis~~~i 80 (186)
.-.++++|+|.|.+.+-+.+...... ...+++-||+|+...
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~ 122 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELR 122 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHH
Confidence 45799999999999988887653322 257999999999774
No 427
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=70.67 E-value=35 Score=27.60 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=28.6
Q ss_pred CCCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 35 KLIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
..++++.+||-.||. .|..+..+++.. +.+|+.++.++...
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~-----g~~v~~~~~~~~~~ 177 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKAL-----GARVIAAASSEEKL 177 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHh-----CCEEEEEeCCHHHH
Confidence 346788999999982 344555566654 46899998887653
No 428
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=70.57 E-value=7 Score=32.48 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=37.9
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVIN 98 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~ 98 (186)
.-|.++|.|+|++|..+...- -.+...|++.+..+.. .....++.+.++|+..
T Consensus 52 ~~v~eIgPgpggitR~il~a~-----~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNAD-----VARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred ceeEEecCCCCchhHHHHhcc-----hhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 479999999999999999762 3588889999888654 1222345555666554
No 429
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=70.44 E-value=11 Score=31.93 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=26.9
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i~ 81 (186)
.++++.+||=.|+|. |..+..+++.. +. +|++++-++...+
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~-----G~~~v~~~~~~~~~~~ 211 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAA-----GASKIIVSEPSEARRE 211 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHH
Confidence 357788998887643 34444455554 45 7999988776643
No 430
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=70.39 E-value=36 Score=29.81 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=50.3
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPK 110 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~ 110 (186)
..+.+||-.| |+|.++..+++.+-.. +.+|++++-++..+.. .....+++++++|+.+.. .+......
T Consensus 58 ~~~~kVLVtG-atG~IG~~l~~~Ll~~--G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~--~l~~~~~~ 132 (390)
T PLN02657 58 PKDVTVLVVG-ATGYIGKFVVRELVRR--GYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDAD--SLRKVLFS 132 (390)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHC--CCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHH--HHHHHHHH
Confidence 4467888887 6899999998776431 5689999877654321 011246888999998753 22222210
Q ss_pred -CCCccEEEeCC
Q 038391 111 -QKGFSVILSDM 121 (186)
Q Consensus 111 -~~~~D~V~~d~ 121 (186)
+..+|+|+...
T Consensus 133 ~~~~~D~Vi~~a 144 (390)
T PLN02657 133 EGDPVDVVVSCL 144 (390)
T ss_pred hCCCCcEEEECC
Confidence 11689998644
No 431
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=70.21 E-value=14 Score=31.59 Aligned_cols=41 Identities=24% Similarity=0.506 Sum_probs=25.9
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVKV 80 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i 80 (186)
..+.++.+||-.|+|. |..+..+++.. +.+ |++++-++...
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~-----G~~~vi~~~~s~~~~ 225 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAF-----GASPIIAVDVRDEKL 225 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHc-----CCCeEEEEeCCHHHH
Confidence 3356788888776542 44555555554 345 88888776653
No 432
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=70.15 E-value=12 Score=31.37 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=28.5
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.++++.+||=.|+|. |..+..+++.+ +.+|+.++.++...+
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~-----G~~vi~~~~~~~~~~ 201 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM-----GFRTVAISRGSDKAD 201 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC-----CCeEEEEeCChHHHH
Confidence 467788999999654 44555556654 468999988876643
No 433
>PRK06940 short chain dehydrogenase; Provisional
Probab=69.99 E-value=26 Score=28.74 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=46.7
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQKGF 114 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~ 114 (186)
.+|=-|+ |+++..+++.+.. +.+|+.+|.++..+.. .....++.+++.|+.+... ..+.... ..+.+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~---G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~-~~g~i 77 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGA---GKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ-TLGPV 77 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhC---CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH-hcCCC
Confidence 4444454 5799999998853 6899999987654322 1112357788889877531 1222221 12579
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|+++.+..
T Consensus 78 d~li~nAG 85 (275)
T PRK06940 78 TGLVHTAG 85 (275)
T ss_pred CEEEECCC
Confidence 99998764
No 434
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=69.81 E-value=4.6 Score=34.50 Aligned_cols=15 Identities=47% Similarity=0.844 Sum_probs=14.4
Q ss_pred ccccCcEEEEEEccC
Q 038391 168 VLKPGGHLVIKLLES 182 (186)
Q Consensus 168 ~LkpgG~lvi~~~~~ 182 (186)
+|+|||+|+|-.||+
T Consensus 225 ~L~~gGrl~visfHS 239 (296)
T PRK00050 225 LLKPGGRLAVISFHS 239 (296)
T ss_pred HhcCCCEEEEEecCc
Confidence 999999999999997
No 435
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=69.43 E-value=6.8 Score=31.64 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=49.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCCh--hhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPS--NQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~ 114 (186)
+++++|-.|++ |+++..+++.+-. .+.+|+.++-++..++.. ....++.+++.|+.+... ..+.+.....+.+
T Consensus 5 ~~k~vlVtGas-~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 5 HGQVALITGGG-SGIGRALVERFLA--EGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 46688888864 5577777776643 267899999877654321 122356778888876531 1222221123578
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|+++.+..
T Consensus 82 d~li~~ag 89 (263)
T PRK06200 82 DCFVGNAG 89 (263)
T ss_pred CEEEECCC
Confidence 99998764
No 436
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.33 E-value=15 Score=32.50 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=42.9
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEE---EeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhh
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVG---IDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRAL 107 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~g---vDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~ 107 (186)
.++...+++|||.|.++.+++...+. ..++- +|-....+.. ......+.=++.|+.++....+.++
T Consensus 181 ~~~~~~vEFGAGrg~Ls~~vs~~l~~----~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dLkL~~i~el 254 (420)
T KOG2811|consen 181 APSSCFVEFGAGRGELSRWVSDCLQI----QNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDLKLNAIPEL 254 (420)
T ss_pred CCcceEEEecCCchHHHHHHHHHhcc----ccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhcCccccccc
Confidence 55578999999999999999988764 45555 7766665443 1112334445667766655444433
No 437
>PRK06949 short chain dehydrogenase; Provisional
Probab=69.14 E-value=8.6 Score=30.71 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=50.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
++++||-.| |+|+++..+++.+... +.+|++++.++..+.. .....++.++..|+.+... ..+.+.....
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQA--GAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 467888888 6677888888776542 5689999887765432 1122457788888876431 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 47899988764
No 438
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=69.07 E-value=4.7 Score=34.89 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=15.1
Q ss_pred CCEEEEEcccCChHHHHHHHH
Q 038391 40 GSSVLDLGCAPGAWLQVACQS 60 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~ 60 (186)
.-+|+|+||..|..+..+.+.
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHH
T ss_pred ceEEEecCCCCCccHHHHHHH
Confidence 358999999999998776644
No 439
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.85 E-value=9.8 Score=32.05 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=25.0
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVK 79 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~ 79 (186)
.+++.+||-.|+|. |..+..+++.+ +. +|++++-++..
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~-----G~~~v~~~~~~~~~ 200 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAA-----GASLVIASDPNPYR 200 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHH
Confidence 46788888877653 55666666665 35 68888655544
No 440
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=68.52 E-value=9 Score=34.27 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=24.8
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS 82 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~ 82 (186)
.+|--+| -|+.+..++-.+.. -|.+|+|+||++..+..
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~--~G~~ViG~DIn~~~Vd~ 47 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFAS--AGFKVIGVDINQKKVDK 47 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHH--cCCceEeEeCCHHHHHH
Confidence 4555555 45555555554433 15799999999988765
No 441
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=68.49 E-value=20 Score=30.26 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKV 80 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i 80 (186)
++++.+||-.|+|. |..+..+++.. +. +|+.++.++...
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~-----G~~~v~~~~~~~~~~ 213 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKAL-----GPANIIVVDIDEAKL 213 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-----CCCeEEEEeCCHHHH
Confidence 45788999887643 44445555554 34 788998776653
No 442
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=68.40 E-value=13 Score=29.79 Aligned_cols=80 Identities=11% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
+++||-.|+ +|+++..+++.+-. .+.+|+.++.....+.. .....++.++..|+++... ..+..+...-+
T Consensus 11 ~k~vlVtG~-s~gIG~~la~~l~~--~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 11 GKCAIITGA-GAGIGKEIAITFAT--AGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 678888885 45577777766543 26789888876654322 1112356777888876531 11122211124
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
++|.++.+..
T Consensus 88 ~~d~li~~ag 97 (255)
T PRK06113 88 KVDILVNNAG 97 (255)
T ss_pred CCCEEEECCC
Confidence 7899988654
No 443
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.06 E-value=36 Score=26.91 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
+++||=.|+ +|+++..+++++-. .+.+|++++-++..... .....++.++..|+.+... ..+.......+
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~--~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAK--EGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456665554 67889998887754 25689999887765332 1123467788888876431 11111111124
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|+|+.+..
T Consensus 81 ~~d~vi~~a~ 90 (258)
T PRK12429 81 GVDILVNNAG 90 (258)
T ss_pred CCCEEEECCC
Confidence 6899988653
No 444
>PRK06523 short chain dehydrogenase; Provisional
Probab=68.05 E-value=17 Score=29.17 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=47.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSV 116 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~ 116 (186)
++++||-.|++ |+++..+++.+.. .+.+|++++-++... ...++.+++.|+.+... ..+......-+.+|+
T Consensus 8 ~~k~vlItGas-~gIG~~ia~~l~~--~G~~v~~~~r~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 80 (260)
T PRK06523 8 AGKRALVTGGT-KGIGAATVARLLE--AGARVVTTARSRPDD----LPEGVEFVAADLTTAEGCAAVARAVLERLGGVDI 80 (260)
T ss_pred CCCEEEEECCC-CchhHHHHHHHHH--CCCEEEEEeCChhhh----cCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 36788888864 5577777776643 167899998775432 12357788888876531 111111111247899
Q ss_pred EEeCCC
Q 038391 117 ILSDMC 122 (186)
Q Consensus 117 V~~d~~ 122 (186)
|+.+..
T Consensus 81 vi~~ag 86 (260)
T PRK06523 81 LVHVLG 86 (260)
T ss_pred EEECCc
Confidence 988764
No 445
>PRK12742 oxidoreductase; Provisional
Probab=67.85 E-value=16 Score=28.72 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=41.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCC-CCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVK-KVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis-~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
+++||=.|+ +|+++..+++.+-.. +.+|+.+... +...+......+..++..|+.+.. .+..+....+.+|+++
T Consensus 6 ~k~vlItGa-sggIG~~~a~~l~~~--G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~--~~~~~~~~~~~id~li 80 (237)
T PRK12742 6 GKKVLVLGG-SRGIGAAIVRRFVTD--GANVRFTYAGSKDAAERLAQETGATAVQTDSADRD--AVIDVVRKSGALDILV 80 (237)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHC--CCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHH--HHHHHHHHhCCCcEEE
Confidence 567887776 566777777766431 5688776542 222111001113456667776532 1222211124689999
Q ss_pred eCCC
Q 038391 119 SDMC 122 (186)
Q Consensus 119 ~d~~ 122 (186)
.+..
T Consensus 81 ~~ag 84 (237)
T PRK12742 81 VNAG 84 (237)
T ss_pred ECCC
Confidence 8754
No 446
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=67.82 E-value=7.7 Score=32.30 Aligned_cols=42 Identities=36% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVKVP 81 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~i~ 81 (186)
..++++.+||.+|+|. |..+..+++.. +.+ |+.++-+++...
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~-----G~~~v~~~~~~~~~~~ 198 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLN-----GASRVTVAEPNEEKLE 198 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHH
Confidence 3467889999997542 44555555554 345 888888776643
No 447
>PRK06139 short chain dehydrogenase; Provisional
Probab=67.48 E-value=30 Score=29.52 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=47.9
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh-hh-HhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS-NQ-VRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~-~~-l~~~~~~~~ 112 (186)
++.||=.|+ +|+++..+++.+.. .+.+|+.++-++..+.. .....++.++..|+++... .. +.......+
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~--~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFAR--RGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 557776666 45677777776654 26789999887765432 1123456777888876431 11 111111125
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|+++.+..
T Consensus 84 ~iD~lVnnAG 93 (330)
T PRK06139 84 RIDVWVNNVG 93 (330)
T ss_pred CCCEEEECCC
Confidence 7999999764
No 448
>PRK06181 short chain dehydrogenase; Provisional
Probab=67.41 E-value=32 Score=27.58 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=45.7
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCC
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQKG 113 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~ 113 (186)
.+||-.| |+|+++..+++.+-. .+.+|++++.++..... .....++.++..|+.+... ..+......-+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~--~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLAR--AGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3567666 556688887776543 25799999987644221 1123467778888876531 111111111236
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
.|.|+.+..
T Consensus 79 id~vi~~ag 87 (263)
T PRK06181 79 IDILVNNAG 87 (263)
T ss_pred CCEEEECCC
Confidence 899988653
No 449
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=66.56 E-value=10 Score=33.59 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=33.5
Q ss_pred HHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 32 KQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 32 ~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.+...+.++.+||-|+.|-.+...++.+. -.+|++||++|..
T Consensus 28 ~~aL~i~~~d~vl~ItSaG~N~L~yL~~~------P~~I~aVDlNp~Q 69 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSAGCNALDYLLAG------PKRIHAVDLNPAQ 69 (380)
T ss_pred HHHhCCCCCCeEEEEccCCchHHHHHhcC------CceEEEEeCCHHH
Confidence 33334789999999998888888876664 2699999999977
No 450
>PRK05717 oxidoreductase; Validated
Probab=66.07 E-value=8.5 Score=30.90 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=49.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGF 114 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~ 114 (186)
+++++|-.|+ +|+++..+++.+-.. +.+|+.+|.++..... .....++.+++.|+.+... ..+.+.....+.+
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 85 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAE--GWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRL 85 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 4667776665 577888888777531 5799999887644222 1122357788899886431 1122222112468
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|+++.++.
T Consensus 86 d~li~~ag 93 (255)
T PRK05717 86 DALVCNAA 93 (255)
T ss_pred CEEEECCC
Confidence 99988764
No 451
>PRK06138 short chain dehydrogenase; Provisional
Probab=65.81 E-value=42 Score=26.50 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=47.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS--NQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~ 113 (186)
++++|=.|| +|+++..+++++-. .+.+|+.++-++..... .....++.++..|+++... ..+.......++
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAR--EGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHH--CCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 567777777 46678877776543 15789999876544321 1123457788888876531 111111111247
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|.|+.+..
T Consensus 82 id~vi~~ag 90 (252)
T PRK06138 82 LDVLVNNAG 90 (252)
T ss_pred CCEEEECCC
Confidence 899988654
No 452
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=65.47 E-value=21 Score=29.95 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=25.6
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
.+.++.+||=.|+|. |..+..+++.++ ..+|++++.++...
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G----~~~v~~~~~~~~~~ 204 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYS----PSKIIMVDLDDNRL 204 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC----CCeEEEEcCCHHHH
Confidence 457788888777643 334444555542 15788888877553
No 453
>PRK07109 short chain dehydrogenase; Provisional
Probab=65.46 E-value=35 Score=29.07 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=47.4
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh-h-hHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS-N-QVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~~ 112 (186)
++.||=.|+ +|+++..+++.+-.. +.+|+.++-++..+.. .....++.+++.|+++... . .+......-+
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 456776774 566777777766431 6789999877654332 1123467788899877531 1 1111111124
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|+++.+..
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 7999998764
No 454
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=65.36 E-value=3.8 Score=35.24 Aligned_cols=27 Identities=41% Similarity=0.549 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCcccCCCCCCCCCCCCCcccccCcEEEEEEccC
Q 038391 138 ELGMRAVDLALGPAALASPVNNSDSSTDSGVLKPGGHLVIKLLES 182 (186)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 182 (186)
+.++.++..+.. +|+|||+|+|-.||+
T Consensus 218 ~~L~~~L~~a~~------------------~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 218 EELERGLEAAPD------------------LLKPGGRLVVISFHS 244 (310)
T ss_dssp HHHHHHHHHHHH------------------HEEEEEEEEEEESSH
T ss_pred HHHHHHHHHHHH------------------HhcCCcEEEEEEecc
Confidence 345566777776 999999999999996
No 455
>PRK06196 oxidoreductase; Provisional
Probab=65.34 E-value=7.2 Score=32.71 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=49.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-CCCCCeEEEEeeecCCCh--hhHhhhCCCCCCcc
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-HCDARVQTVSADVINLPS--NQVRALSPKQKGFS 115 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D 115 (186)
.+++||=.|+ +|+++..+++.+-. .+.+|++++-++...... ....++.++..|+.+... ..+.......+.+|
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~--~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQ--AGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 4667887775 56788888877654 257899998776543221 111236788889886531 11222211235799
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
+++.++.
T Consensus 102 ~li~nAg 108 (315)
T PRK06196 102 ILINNAG 108 (315)
T ss_pred EEEECCC
Confidence 9999764
No 456
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=65.12 E-value=8.9 Score=32.86 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=45.7
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCChhhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPSNQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~ 113 (186)
|+.|+-+| ---++...+..-+- -.+|..+||.+..+.. .....++..+.-|..++-++.+ .++
T Consensus 153 gK~I~vvG--DDDLtsia~aLt~m---pk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~------~~k 221 (354)
T COG1568 153 GKEIFVVG--DDDLTSIALALTGM---PKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDL------KRK 221 (354)
T ss_pred CCeEEEEc--CchhhHHHHHhcCC---CceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHH------Hhh
Confidence 55688888 33333333332211 2589999999988654 1122347777788887655543 579
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
||+.++|++
T Consensus 222 FDvfiTDPp 230 (354)
T COG1568 222 FDVFITDPP 230 (354)
T ss_pred CCeeecCch
Confidence 999999875
No 457
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.03 E-value=13 Score=30.55 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=46.9
Q ss_pred CCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC---CCc-CCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV---PSL-HCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i---~~~-~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++.+|-.|++. ++++..+++.+-. .|.+|+.++.+.... ... .......+++.|+++... ..+......-
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~--~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAA--QGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh--CCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 467889999886 3688888877643 267898887654211 110 111123456788876531 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 84 g~iD~lVnnAG 94 (271)
T PRK06505 84 GKLDFVVHAIG 94 (271)
T ss_pred CCCCEEEECCc
Confidence 57999998864
No 458
>PLN02253 xanthoxin dehydrogenase
Probab=64.94 E-value=13 Score=30.35 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=48.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS--NQVRALSPKQKG 113 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~ 113 (186)
++++|-.| |+|+++..+++.+.. .+.+|+.+|.++..... .....++.+++.|+.+... ..+.......++
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHK--HGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT 94 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 56788777 556788888877653 26799999877654321 1112357888999887531 111111111247
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|.++.+..
T Consensus 95 id~li~~Ag 103 (280)
T PLN02253 95 LDIMVNNAG 103 (280)
T ss_pred CCEEEECCC
Confidence 899998764
No 459
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.70 E-value=11 Score=29.90 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=48.9
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++++|-.|+ +|+++..+++.+... +.+|+.++.++..+.. .....++.+++.|+++... ..+.......
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~--G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQK--GAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678888886 566777787766432 5689999987754322 1123467778888876431 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|.|+.+..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 47899998653
No 460
>PRK05650 short chain dehydrogenase; Provisional
Probab=64.48 E-value=44 Score=26.99 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=46.1
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh-h-hHhhhCCCCCCc
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS-N-QVRALSPKQKGF 114 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~~~~ 114 (186)
+||-.|+ +|+++..+++.+-. .+.+|+.++.++..+.. .....++.+++.|+.+... . .+.......+.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAR--EGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4665564 66788888877654 26789999877655322 1223467788888876431 1 111111112479
Q ss_pred cEEEeCCC
Q 038391 115 SVILSDMC 122 (186)
Q Consensus 115 D~V~~d~~ 122 (186)
|+++.+..
T Consensus 79 d~lI~~ag 86 (270)
T PRK05650 79 DVIVNNAG 86 (270)
T ss_pred CEEEECCC
Confidence 99998754
No 461
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.36 E-value=31 Score=30.15 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=31.7
Q ss_pred CCCCCEEEEEccc-CChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 37 IKPGSSVLDLGCA-PGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 37 ~~~~~~vLDlGcG-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
+.||.+|-=.|.| -|.++..+++.| +.+|++||-+...
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM-----G~rV~vis~~~~k 217 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM-----GMRVTVISTSSKK 217 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh-----CcEEEEEeCCchh
Confidence 4689888888766 589999999998 5799999999744
No 462
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=64.03 E-value=31 Score=28.74 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=26.3
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
.+.++.+||=.|+|. |..+..+++..+ +.+|++++-++...
T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g----~~~v~~~~~~~~~~ 205 (340)
T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALT----PATVIAVDRSEEAL 205 (340)
T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhC----CCcEEEEeCCHHHH
Confidence 356788999998654 334444555542 26899988777553
No 463
>PRK08226 short chain dehydrogenase; Provisional
Probab=63.96 E-value=45 Score=26.65 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=48.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
+++++|-.|+. |+++..+++++-.. +.+|+.++-++..... .....++.++..|+.+... ..+.+....-+
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 81 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFARH--GANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35678877764 66888888776542 6789999877642111 1122456778888876431 11111111124
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
..|+++.+..
T Consensus 82 ~id~vi~~ag 91 (263)
T PRK08226 82 RIDILVNNAG 91 (263)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 464
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=63.88 E-value=74 Score=25.45 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=47.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh-h-hHhhhCCCCCCccEE
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS-N-QVRALSPKQKGFSVI 117 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~~~~D~V 117 (186)
++.+|=.|++ |+++..+++.+-. .+.+|+.+|.++..... .++.+++.|+.+... . .+......-+++|.+
T Consensus 9 ~k~vlItG~s-~gIG~~la~~l~~--~G~~v~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l 81 (266)
T PRK06171 9 GKIIIVTGGS-SGIGLAIVKELLA--NGANVVNADIHGGDGQH----ENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGL 81 (266)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH--CCCEEEEEeCCcccccc----CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5677767754 5677777766543 26799999988766432 356777888876531 1 111111112478999
Q ss_pred EeCCC
Q 038391 118 LSDMC 122 (186)
Q Consensus 118 ~~d~~ 122 (186)
+.+..
T Consensus 82 i~~Ag 86 (266)
T PRK06171 82 VNNAG 86 (266)
T ss_pred EECCc
Confidence 88654
No 465
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=63.82 E-value=29 Score=29.56 Aligned_cols=41 Identities=22% Similarity=0.453 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVKV 80 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~i 80 (186)
..++++.+||-.|+|. |..+..+++.. +. +|++++-++...
T Consensus 178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~-----G~~~Vi~~~~~~~~~ 220 (363)
T cd08279 178 ARVRPGDTVAVIGCGGVGLNAIQGARIA-----GASRIIAVDPVPEKL 220 (363)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCcEEEEcCCHHHH
Confidence 3467888999887653 55556666665 35 488988777653
No 466
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=63.50 E-value=16 Score=31.54 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=26.8
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCC-eEEEEeCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGG-SVVGIDVKKVK 79 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~-~v~gvDis~~~ 79 (186)
..++++.+||=.|+|. |..+..+++.. +. +|++++.++..
T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~-----G~~~vi~~~~~~~~ 240 (384)
T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAA-----GASKVIAFEISEER 240 (384)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEcCCHHH
Confidence 3467888998887653 34444455554 35 79999887765
No 467
>PRK06483 dihydromonapterin reductase; Provisional
Probab=63.40 E-value=14 Score=29.25 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=45.1
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCccEEE
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPS--NQVRALSPKQKGFSVIL 118 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D~V~ 118 (186)
+++|-.|++ |+++..+++.+.. .+.+|+.++.++..........++.++..|+.+... ..+......-+.+|.++
T Consensus 3 k~vlItGas-~gIG~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv 79 (236)
T PRK06483 3 APILITGAG-QRIGLALAWHLLA--QGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAII 79 (236)
T ss_pred ceEEEECCC-ChHHHHHHHHHHH--CCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEE
Confidence 456666665 5577777776643 267999998876542211111235677888876431 11222211124689998
Q ss_pred eCCC
Q 038391 119 SDMC 122 (186)
Q Consensus 119 ~d~~ 122 (186)
.+..
T Consensus 80 ~~ag 83 (236)
T PRK06483 80 HNAS 83 (236)
T ss_pred ECCc
Confidence 8764
No 468
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=62.58 E-value=15 Score=30.37 Aligned_cols=42 Identities=31% Similarity=0.320 Sum_probs=26.3
Q ss_pred CCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.++++.+||=.|+ |..+..+++..... |.+|++++-+++..+
T Consensus 152 ~~~~g~~vlV~g~--g~vg~~~~q~a~~~--G~~vi~~~~~~~~~~ 193 (319)
T cd08242 152 PITPGDKVAVLGD--GKLGLLIAQVLALT--GPDVVLVGRHSEKLA 193 (319)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHc--CCeEEEEcCCHHHHH
Confidence 3577889998875 45555444333221 467999988776643
No 469
>PRK09291 short chain dehydrogenase; Provisional
Probab=62.20 E-value=58 Score=25.79 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=46.2
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCChhhHhhhCCCCCCcc
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPSNQVRALSPKQKGFS 115 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D 115 (186)
++||-.|+ +|+++..+++.+.. .+.+|++++-++..... .....++.++..|+.+.. .+.... ...+|
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--~~~~~~--~~~id 75 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLAR--KGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAI--DRAQAA--EWDVD 75 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHH--HHHHHh--cCCCC
Confidence 46777776 56678877777643 26789998776543211 112235778888987653 232221 24799
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
.|+.+..
T Consensus 76 ~vi~~ag 82 (257)
T PRK09291 76 VLLNNAG 82 (257)
T ss_pred EEEECCC
Confidence 9998754
No 470
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=62.15 E-value=30 Score=29.56 Aligned_cols=43 Identities=23% Similarity=0.515 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
..++++.+||=.|+|. |..+..+++.++ ...|++++.++....
T Consensus 179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G----~~~v~~~~~~~~~~~ 222 (365)
T cd05279 179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAG----ASRIIAVDINKDKFE 222 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC----CCeEEEEeCCHHHHH
Confidence 3467888998887654 444455556553 135888887776643
No 471
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=62.12 E-value=25 Score=29.09 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=47.6
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCCChhhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINLPSNQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~ 112 (186)
+++||-.|+ +|+++.++++++-.. +.+|++++.++..... .....+++++.+|+.+... +.... .
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~--~~~~~---~ 75 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQR--GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGS--FDSVV---D 75 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHC--CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcch--HHHHH---c
Confidence 467776664 799999999887542 5689888876543211 0112468889999887542 22222 2
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|.|+-.++
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 5798877554
No 472
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=62.06 E-value=20 Score=30.10 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=23.5
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCe-EEEEeCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGS-VVGIDVKKVK 79 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~-v~gvDis~~~ 79 (186)
+.++.+||-.|+|. |..+..+++.. +.+ |++++-++..
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~-----G~~~v~~~~~~~~~ 198 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKAS-----GAYPVIVSDPNEYR 198 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHH
Confidence 56788888766542 44445555554 455 8888766654
No 473
>PRK12939 short chain dehydrogenase; Provisional
Probab=61.79 E-value=52 Score=25.84 Aligned_cols=81 Identities=17% Similarity=0.186 Sum_probs=47.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh-h-hHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS-N-QVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~-~-~l~~~~~~~ 111 (186)
+++++|=.| |+|+++..+++.+... +.+|+.++-++..+.. .....++.+++.|+.+... . .+......-
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEA--GATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356777556 4677888888776431 5689999877654322 1122467888889876431 1 111111111
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+++|.|+....
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 47899988653
No 474
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=61.71 E-value=13 Score=29.90 Aligned_cols=80 Identities=23% Similarity=0.239 Sum_probs=48.5
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC--cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCCcc
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS--LHCDARVQTVSADVINLPS--NQVRALSPKQKGFS 115 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~--~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~D 115 (186)
++++|=.| |+|+++..+++.+-.. +.+|+.+|-+...+.. .....++.+++.|+.+... ..+......-+..|
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 82 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAE--GARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGID 82 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 45777777 5667888888776431 6799999987765432 1122357788888876531 11112111124689
Q ss_pred EEEeCCC
Q 038391 116 VILSDMC 122 (186)
Q Consensus 116 ~V~~d~~ 122 (186)
.++.+..
T Consensus 83 ~li~~ag 89 (257)
T PRK07067 83 ILFNNAA 89 (257)
T ss_pred EEEECCC
Confidence 9887653
No 475
>PRK07578 short chain dehydrogenase; Provisional
Probab=61.49 E-value=44 Score=25.57 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=38.5
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEEeCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVILSDM 121 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~~d~ 121 (186)
++|-.|+ +|+++..+++.+.. ..+|++++-++. .++.|+.+.. .++.+...-+++|+++.+.
T Consensus 2 ~vlItGa-s~giG~~la~~l~~---~~~vi~~~r~~~------------~~~~D~~~~~--~~~~~~~~~~~id~lv~~a 63 (199)
T PRK07578 2 KILVIGA-SGTIGRAVVAELSK---RHEVITAGRSSG------------DVQVDITDPA--SIRALFEKVGKVDAVVSAA 63 (199)
T ss_pred eEEEEcC-CcHHHHHHHHHHHh---cCcEEEEecCCC------------ceEecCCChH--HHHHHHHhcCCCCEEEECC
Confidence 4667775 57788888888754 257888776543 3456776543 2222211124789999876
Q ss_pred C
Q 038391 122 C 122 (186)
Q Consensus 122 ~ 122 (186)
.
T Consensus 64 g 64 (199)
T PRK07578 64 G 64 (199)
T ss_pred C
Confidence 4
No 476
>PRK07814 short chain dehydrogenase; Provisional
Probab=61.40 E-value=13 Score=30.06 Aligned_cols=81 Identities=9% Similarity=0.099 Sum_probs=49.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++++|=.|+ +|+++..+++.+-. .+.+|++++.++..++. .....++.++..|+++... ..+......-
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~--~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAE--AGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4668888885 67788888877643 26799999987654322 1112357778888876531 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+++|+|+.+..
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 47899988653
No 477
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=61.40 E-value=21 Score=29.46 Aligned_cols=49 Identities=24% Similarity=0.235 Sum_probs=35.6
Q ss_pred hHHHHHHHcCCCCCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 26 KLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 26 ~l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.|.+..... .-.++..|||.-+|+|..+...... +-.++|+|+++..+.
T Consensus 210 ~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~------~r~~ig~e~~~~y~~ 258 (302)
T COG0863 210 ALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNL------GRRFIGIEINPEYVE 258 (302)
T ss_pred HHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHc------CCceEEEecCHHHHH
Confidence 444433333 3477999999999999766665554 568999999997743
No 478
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=61.25 E-value=9.9 Score=33.07 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=42.4
Q ss_pred CEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 41 SSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 41 ~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
.+|.-+|-|. |.....++--+ ++.|+-+|++..++... ....++.++..+.. ++++. -.+.|++
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl-----gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~-----~iee~---v~~aDlv 235 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL-----GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPS-----NIEEA---VKKADLV 235 (371)
T ss_pred ccEEEECCccccchHHHHHhcc-----CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHH-----HHHHH---hhhccEE
Confidence 3677788886 66677776665 68999999999887652 22234555544433 33322 2478988
Q ss_pred Ee
Q 038391 118 LS 119 (186)
Q Consensus 118 ~~ 119 (186)
|.
T Consensus 236 Ig 237 (371)
T COG0686 236 IG 237 (371)
T ss_pred EE
Confidence 76
No 479
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=61.03 E-value=31 Score=28.68 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 35 KLIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 35 ~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
..++++.+||=.|+|+ |..+..+++... +.+|++++-+++..+
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~----g~~v~~~~~~~~~~~ 201 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF----NAKVIAVDINDDKLA 201 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhC----CCeEEEEeCChHHHH
Confidence 3468899999999643 445555555421 468999988877643
No 480
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=60.89 E-value=14 Score=29.70 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=50.0
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++++|=.| |+|+++..+++++-. .+.+|+.++-++..++. .....++.+++.|+.+... ..+.......
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGE--AGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467888888 567888888888754 25689999877654322 1122357788888886531 1112211112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|.|+....
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 46899988653
No 481
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=60.68 E-value=39 Score=31.77 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEE
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVI 117 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V 117 (186)
+++.+||-.| |+|+++.++++.+-.. ++.+|+++|..+..........+++++.+|+.+... .+.... ..+|.|
T Consensus 313 ~~~~~VLVTG-atGFIGs~Lv~~Ll~~-~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~-~l~~~l---~~~D~V 386 (660)
T PRK08125 313 KRRTRVLILG-VNGFIGNHLTERLLRD-DNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSE-WIEYHI---KKCDVV 386 (660)
T ss_pred hcCCEEEEEC-CCchHHHHHHHHHHhC-CCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHH-HHHHHh---cCCCEE
Confidence 4566777666 6899999999876431 135999999876543221222468888999876431 122221 258988
Q ss_pred Ee
Q 038391 118 LS 119 (186)
Q Consensus 118 ~~ 119 (186)
+-
T Consensus 387 iH 388 (660)
T PRK08125 387 LP 388 (660)
T ss_pred EE
Confidence 74
No 482
>PLN02702 L-idonate 5-dehydrogenase
Probab=60.09 E-value=27 Score=29.73 Aligned_cols=42 Identities=29% Similarity=0.506 Sum_probs=27.6
Q ss_pred CCCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 36 LIKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 36 ~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
.+.++.+||-+|+|. |..+..+++..+. ..|+++|.++....
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~----~~v~~~~~~~~~~~ 220 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGA----PRIVIVDVDDERLS 220 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC----CEEEEECCCHHHHH
Confidence 357788998887653 4555666666532 35888988766543
No 483
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=60.05 E-value=17 Score=30.48 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=26.3
Q ss_pred CCCCCEEEEEcccC-ChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 37 IKPGSSVLDLGCAP-GAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 37 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
++++.+||=.|||. |..+..+++.+ +.+|+.++.++....
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~-----G~~v~~~~~~~~~~~ 207 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKAL-----GAEVTAFSRSPSKKE 207 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEcCCHHHHH
Confidence 57788887777643 44444455554 468999988876543
No 484
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.85 E-value=6.2 Score=30.77 Aligned_cols=66 Identities=20% Similarity=0.339 Sum_probs=42.5
Q ss_pred HHHHHcCCC--CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-------cCCCCCeEEEEeeecCC
Q 038391 29 QIQKQYKLI--KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-------LHCDARVQTVSADVINL 99 (186)
Q Consensus 29 ~~~~~~~~~--~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-------~~~~~~~~~~~~d~~~~ 99 (186)
++.+-.+++ ++..+.+|+|.|-|.+-...++.. --..+|+|+++-.+.. +....+..|..-|+...
T Consensus 60 Qv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g-----~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 60 QVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-----LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC-----CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 333434433 334589999999999988887761 2478999999977543 22334555655555444
No 485
>PRK07904 short chain dehydrogenase; Provisional
Probab=59.75 E-value=40 Score=27.18 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=50.2
Q ss_pred CCCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC-CCC------cCCCCCeEEEEeeecCCCh--hhHhhhC
Q 038391 38 KPGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK-VPS------LHCDARVQTVSADVINLPS--NQVRALS 108 (186)
Q Consensus 38 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~-i~~------~~~~~~~~~~~~d~~~~~~--~~l~~~~ 108 (186)
..+.+||-.|+ +|+++..+++++-.. ++.+|+.++-++.. +.. .....++.+++.|+.+... ..++...
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~-gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKN-APARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhc-CCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 45668888888 566888888775321 23689999887664 221 1112368889999887542 1233332
Q ss_pred CCCCCccEEEeCC
Q 038391 109 PKQKGFSVILSDM 121 (186)
Q Consensus 109 ~~~~~~D~V~~d~ 121 (186)
. .+.+|+++.+.
T Consensus 84 ~-~g~id~li~~a 95 (253)
T PRK07904 84 A-GGDVDVAIVAF 95 (253)
T ss_pred h-cCCCCEEEEee
Confidence 2 25799888765
No 486
>PRK05855 short chain dehydrogenase; Validated
Probab=59.67 E-value=54 Score=29.39 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=49.3
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
+.++|-.|+ +|+++..+++++.. .+.+|+.++.++..++. .....++.++..|+++... ..+.......+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAR--EGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 356776665 67788888877654 26689999887654322 1112357888889887541 12222211235
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|+++.+..
T Consensus 392 ~id~lv~~Ag 401 (582)
T PRK05855 392 VPDIVVNNAG 401 (582)
T ss_pred CCcEEEECCc
Confidence 7999999764
No 487
>PRK07102 short chain dehydrogenase; Provisional
Probab=59.55 E-value=21 Score=28.29 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=47.3
Q ss_pred EEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC------cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCC
Q 038391 42 SVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS------LHCDARVQTVSADVINLPS--NQVRALSPKQKG 113 (186)
Q Consensus 42 ~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~------~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~ 113 (186)
+++-.| |+|+++..+++.+-.. +.+|+.++.++..... .....++.+++.|+.+... ..+.+. ...
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~---~~~ 76 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAA--GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSL---PAL 76 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHH---hhc
Confidence 677667 5577888888777542 5689999988765322 1123478888999887541 112222 235
Q ss_pred ccEEEeCC
Q 038391 114 FSVILSDM 121 (186)
Q Consensus 114 ~D~V~~d~ 121 (186)
+|+++.+.
T Consensus 77 ~d~vv~~a 84 (243)
T PRK07102 77 PDIVLIAV 84 (243)
T ss_pred CCEEEECC
Confidence 79998765
No 488
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=59.46 E-value=28 Score=29.13 Aligned_cols=39 Identities=31% Similarity=0.350 Sum_probs=29.4
Q ss_pred CCCCCCEEEEEccc--CChHHHHHHHHhCCCCCCCeEEEEeCCCCC
Q 038391 36 LIKPGSSVLDLGCA--PGAWLQVACQSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 36 ~~~~~~~vLDlGcG--~G~~~~~l~~~~~~~~~~~~v~gvDis~~~ 79 (186)
.++++.+||=.|++ .|..+..+++.. +.+|+.+.-++..
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~-----g~~v~~~~~~~~~ 202 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAM-----GLRVIAIDVGDEK 202 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHC-----CCeEEEEeCCHHH
Confidence 46788999999886 466777777775 4689999877655
No 489
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=59.40 E-value=79 Score=26.54 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=45.8
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCC-----CCCc-----CCCCCeEEEEeeecCCChhhHhhhCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVK-----VPSL-----HCDARVQTVSADVINLPSNQVRALSP 109 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~-----i~~~-----~~~~~~~~~~~d~~~~~~~~l~~~~~ 109 (186)
+.+||-.|+ +|+++..+++.+... +.+|++++..+.. +... ....++.++.+|+.+.. .+..+..
T Consensus 6 ~~~vlVTGa-tGfiG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~--~~~~~~~ 80 (340)
T PLN02653 6 RKVALITGI-TGQDGSYLTEFLLSK--GYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDAS--SLRRWLD 80 (340)
T ss_pred CCEEEEECC-CCccHHHHHHHHHHC--CCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHH--HHHHHHH
Confidence 456776664 778888888876541 5689999876532 1110 01235788889987643 2222221
Q ss_pred CCCCccEEEeCCC
Q 038391 110 KQKGFSVILSDMC 122 (186)
Q Consensus 110 ~~~~~D~V~~d~~ 122 (186)
...+|+|+-.+.
T Consensus 81 -~~~~d~Vih~A~ 92 (340)
T PLN02653 81 -DIKPDEVYNLAA 92 (340)
T ss_pred -HcCCCEEEECCc
Confidence 225798877553
No 490
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=59.36 E-value=17 Score=32.29 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=48.7
Q ss_pred CEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc--CCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 41 SSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL--HCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 41 ~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~--~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
.+||-+|| |+.++.++..+... +..+|+..|-++...... ....++++++.|+.+.. .+.++. .++|+||
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~-~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~--al~~li---~~~d~VI 73 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN-GDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVD--ALVALI---KDFDLVI 73 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHhhccccceeEEecccChH--HHHHHH---hcCCEEE
Confidence 47899999 66777776664331 237999999998775542 22247889999987653 333333 3569998
Q ss_pred eCCC
Q 038391 119 SDMC 122 (186)
Q Consensus 119 ~d~~ 122 (186)
.-.+
T Consensus 74 n~~p 77 (389)
T COG1748 74 NAAP 77 (389)
T ss_pred EeCC
Confidence 8543
No 491
>PRK06194 hypothetical protein; Provisional
Probab=59.18 E-value=38 Score=27.56 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=48.0
Q ss_pred CCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc-----CCCCCeEEEEeeecCCCh--hhHhhhCCCCC
Q 038391 40 GSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL-----HCDARVQTVSADVINLPS--NQVRALSPKQK 112 (186)
Q Consensus 40 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~-----~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~ 112 (186)
+.++|-.| |+|+++..+++.+-. .+.+|+.+|.+...+... ....++.++.+|+++... ..+.......+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAA--LGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHH--CCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45777666 456788888877653 267899999876553321 112357778899876431 11111111124
Q ss_pred CccEEEeCCC
Q 038391 113 GFSVILSDMC 122 (186)
Q Consensus 113 ~~D~V~~d~~ 122 (186)
.+|+|+.+..
T Consensus 83 ~id~vi~~Ag 92 (287)
T PRK06194 83 AVHLLFNNAG 92 (287)
T ss_pred CCCEEEECCC
Confidence 6899998764
No 492
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=59.14 E-value=48 Score=27.28 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=26.5
Q ss_pred CCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCCC
Q 038391 38 KPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKVP 81 (186)
Q Consensus 38 ~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~ 81 (186)
..+.+||=.|+ | .|..+..+++.. +.+|+.++-++...+
T Consensus 145 ~~~~~vlI~g~~g~vg~~~~~~a~~~-----g~~v~~~~~~~~~~~ 185 (326)
T cd08289 145 PEQGPVLVTGATGGVGSLAVSILAKL-----GYEVVASTGKADAAD 185 (326)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHC-----CCeEEEEecCHHHHH
Confidence 44678988887 3 245555666665 468999988876643
No 493
>PRK12829 short chain dehydrogenase; Provisional
Probab=58.91 E-value=15 Score=29.30 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=49.1
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC---cCCCCCeEEEEeeecCCCh--hhHhhhCCCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS---LHCDARVQTVSADVINLPS--NQVRALSPKQKG 113 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~---~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~~~ 113 (186)
++.++|-.|++ |+++..+++++-. .+.+|++++-++..+.. .....++.++..|+.+... ..+......-++
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAE--AGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGG 86 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56789988875 7778888777643 25789999987655332 1111156778888876531 111111111246
Q ss_pred ccEEEeCCC
Q 038391 114 FSVILSDMC 122 (186)
Q Consensus 114 ~D~V~~d~~ 122 (186)
+|.|+....
T Consensus 87 ~d~vi~~ag 95 (264)
T PRK12829 87 LDVLVNNAG 95 (264)
T ss_pred CCEEEECCC
Confidence 899988654
No 494
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=58.85 E-value=45 Score=26.83 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=28.2
Q ss_pred CCCCCCEEEEEcc-c-CChHHHHHHHHhCCCCCCCeEEEEeCCCCCC
Q 038391 36 LIKPGSSVLDLGC-A-PGAWLQVACQSLGPLDNGGSVVGIDVKKVKV 80 (186)
Q Consensus 36 ~~~~~~~vLDlGc-G-~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i 80 (186)
.++++.+||=.|+ | .|..+..+++.+ +.+|++++.++...
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~-----g~~v~~~~~~~~~~ 174 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKAL-----GATVIGTVSSEEKA 174 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHc-----CCEEEEEcCCHHHH
Confidence 4678899999885 2 355666666665 46899988776553
No 495
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=58.54 E-value=16 Score=29.23 Aligned_cols=81 Identities=9% Similarity=0.157 Sum_probs=49.3
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++++|-.|+ +|+++..+++.+.. .+.+|+.++-++..+.. .....++.++..|+.+... ..+.......
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAG--AGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678887785 66678888777643 26799999987654321 1123357788888876431 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+++|.++.+..
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 47899988754
No 496
>PRK08703 short chain dehydrogenase; Provisional
Probab=58.44 E-value=19 Score=28.46 Aligned_cols=81 Identities=10% Similarity=0.160 Sum_probs=47.6
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCc------CCCCCeEEEEeeecCCChhhHhh----hC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSL------HCDARVQTVSADVINLPSNQVRA----LS 108 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~------~~~~~~~~~~~d~~~~~~~~l~~----~~ 108 (186)
++++||-.|+ +|+++..+++.+.. .+.+|+.++-++..+... .......++..|+.+.....+.. +.
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~--~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAA--AGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHH--cCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 3568888885 66788888877754 267899999887543220 11223566778876432111111 11
Q ss_pred C-CCCCccEEEeCCC
Q 038391 109 P-KQKGFSVILSDMC 122 (186)
Q Consensus 109 ~-~~~~~D~V~~d~~ 122 (186)
. ..+.+|.|+.+..
T Consensus 82 ~~~~~~id~vi~~ag 96 (239)
T PRK08703 82 EATQGKLDGIVHCAG 96 (239)
T ss_pred HHhCCCCCEEEEecc
Confidence 0 1146899988654
No 497
>PRK07890 short chain dehydrogenase; Provisional
Probab=58.36 E-value=14 Score=29.48 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=48.8
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCC-----cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPS-----LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~-----~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++++|=.|+ +|+++..+++.+-.. +.+|+.++.++..++. .....++.++..|+++... ..+......-
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARA--GADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 4567886775 556787777766542 6799999987754322 1113457788889876431 1111111112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|.|+.+..
T Consensus 81 g~~d~vi~~ag 91 (258)
T PRK07890 81 GRVDALVNNAF 91 (258)
T ss_pred CCccEEEECCc
Confidence 46899988764
No 498
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.20 E-value=24 Score=28.70 Aligned_cols=82 Identities=11% Similarity=0.068 Sum_probs=46.7
Q ss_pred CCCEEEEEcc-cCChHHHHHHHHhCCCCCCCeEEEEeCCC---CCCCC-cCCCCCeEEEEeeecCCCh--hhHhhhCCCC
Q 038391 39 PGSSVLDLGC-APGAWLQVACQSLGPLDNGGSVVGIDVKK---VKVPS-LHCDARVQTVSADVINLPS--NQVRALSPKQ 111 (186)
Q Consensus 39 ~~~~vLDlGc-G~G~~~~~l~~~~~~~~~~~~v~gvDis~---~~i~~-~~~~~~~~~~~~d~~~~~~--~~l~~~~~~~ 111 (186)
+++.+|=.|+ |+++++..+++++-. .+.+|+.++... ..+.. ........+++.|+++... ..+......-
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~--~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKR--EGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHH--CCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh
Confidence 3678888888 578888888877754 267888775432 11211 0111123356778876541 1122221112
Q ss_pred CCccEEEeCCC
Q 038391 112 KGFSVILSDMC 122 (186)
Q Consensus 112 ~~~D~V~~d~~ 122 (186)
+.+|+++.+..
T Consensus 83 g~iD~lvnnAG 93 (260)
T PRK06997 83 DGLDGLVHSIG 93 (260)
T ss_pred CCCcEEEEccc
Confidence 57999999864
No 499
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=58.10 E-value=12 Score=27.54 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=18.0
Q ss_pred EEcccCC--hHHHHHH-HHhCCCCCCCeEEEEeCCCCC
Q 038391 45 DLGCAPG--AWLQVAC-QSLGPLDNGGSVVGIDVKKVK 79 (186)
Q Consensus 45 DlGcG~G--~~~~~l~-~~~~~~~~~~~v~gvDis~~~ 79 (186)
|+|+..| ..+..+. +.... +.+|+++|.++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~---~~~v~~~Ep~p~~ 35 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGP---GGRVHAFEPNPSN 35 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS-----SEEEEE---HHH
T ss_pred CcccCCChhHHHHHHHHHHcCC---CCEEEEEECCHHH
Confidence 8999999 4444443 23332 6899999999976
No 500
>PRK07060 short chain dehydrogenase; Provisional
Probab=58.03 E-value=8.7 Score=30.36 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=46.2
Q ss_pred CCCEEEEEcccCChHHHHHHHHhCCCCCCCeEEEEeCCCCCCCCcCCCCCeEEEEeeecCCChhhHhhhCCCCCCccEEE
Q 038391 39 PGSSVLDLGCAPGAWLQVACQSLGPLDNGGSVVGIDVKKVKVPSLHCDARVQTVSADVINLPSNQVRALSPKQKGFSVIL 118 (186)
Q Consensus 39 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~~~v~gvDis~~~i~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~D~V~ 118 (186)
++.++|=.|++ |+++..+++.+... +.+|+.++-++..+..........++..|+++.. .+.......+++|+|+
T Consensus 8 ~~~~~lItGa~-g~iG~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~--~v~~~~~~~~~~d~vi 82 (245)
T PRK07060 8 SGKSVLVTGAS-SGIGRACAVALAQR--GARVVAAARNAAALDRLAGETGCEPLRLDVGDDA--AIRAALAAAGAFDGLV 82 (245)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHH--HHHHHHHHhCCCCEEE
Confidence 35677766554 66777777766432 5689999987655332111113556778877543 2222221124789999
Q ss_pred eCCC
Q 038391 119 SDMC 122 (186)
Q Consensus 119 ~d~~ 122 (186)
.+..
T Consensus 83 ~~ag 86 (245)
T PRK07060 83 NCAG 86 (245)
T ss_pred ECCC
Confidence 8764
Done!