BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038393
(618 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 168/566 (29%), Positives = 232/566 (40%), Gaps = 118/566 (20%)
Query: 48 VTCDVRTHRVTAL---NISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASI----- 99
++ DV R L ++S N + IP LG+ S+LQ LD+S N SG +I
Sbjct: 187 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 100 ---FNI--NMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEI-GNVTKLIGLYLRGNQL 153
NI N F G IP K L+ +SL+ N F+G IP + G L GL L GN
Sbjct: 246 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 154 QGEIPXX-XXXXXXXXXXXXQNNFLTGTXXXXXXXXXXXXXXXXXXXXXTGTIPYAG--N 210
G +P NNF +G +P
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNF-------------------------SGELPMDTLLK 338
Query: 211 LFQLQWLDLSDNQLSGSFP-SFKFKMPRLQVLDLSVNGLSGELPANFCNNFP-FLEELYL 268
+ L+ LDLS N+ SG P S L LDLS N SG + N C N L+ELYL
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 269 SKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXXXXXXXXXX 328
N F G+IP L+NCS L L L FN SG IP +G+L+KL L L
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 329 XX-----------------------XXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFW 365
C L + SLSNN L G +P+ IG L +++
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILK 517
Query: 366 IVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITL----GKLQK------------- 408
+ + + SG IP E+ + +LI + L N NGTIP + GK+
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 409 -------------LQLLSFEDNQLEGSIPNDLCRL----------------AALFQLDLG 439
L+ QL + C + ++ LD+
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 440 GNMLSGFIPACFGNLTYLKKLNLGSNQLT-STSSTLWNIKYILYLNLSSNSFTGSLPLGI 498
NMLSG+IP G++ YL LNLG N ++ S + +++ + L+LSSN G +P +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 499 GNLKVLVQIDLSMNNFSELFQATNEF 524
L +L +IDLS NN S +F
Sbjct: 698 SALTMLTEIDLSNNNLSGPIPEMGQF 723
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 162/586 (27%), Positives = 256/586 (43%), Gaps = 118/586 (20%)
Query: 28 PANFLARNWNTSSSVCNWTGVTCDVRTHRVTALNISGL---------------------- 65
P L +W+++ + C + GVTC R +VT++++S
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 66 -----NLTGTIPSELGNLSSLQTLDLSFNWFSGSIPA----------SIFNINM----FH 106
++ G++ S +SL +LDLS N SG + N++ F
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 107 GKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNV-----TKLIGLYLRGNQLQGEIPXXX 161
GK+ L L + LS N SG +G V +L L + GN++ G++
Sbjct: 139 GKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV-DVS 194
Query: 162 XXXXXXXXXXXQNNFLTGTXXXXXXXXXXXXXXXXXXXXXTGTIPYAGNLFQLQWLDLSD 221
NNF TG IP+ G+ LQ LD+S
Sbjct: 195 RCVNLEFLDVSSNNFSTG-------------------------IPFLGDCSALQHLDISG 229
Query: 222 NQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF--LEELYLSKNMFYGEIPS 279
N+LSG F L++L++S N G +P P L+ L L++N F GEIP
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAENKFTGEIPD 284
Query: 280 DLAN-CSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXXCKYLKY 338
L+ C L L L N+F GA+P G+ + LE L L + LK
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 339 FSLSNNLLDGILPRAIGNLSQSI--------------------------EEFWIVSCNIS 372
LS N G LP ++ NLS S+ +E ++ + +
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 373 GGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAA 432
G IP +SN + L++++L N L+GTIP +LG L KL+ L N LEG IP +L +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 433 LFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLT-STSSTLWNIKYILYLNLSSNSFT 491
L L L N L+G IP+ N T L ++L +N+LT + ++ + L LS+NSF+
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 492 GSLPLGIGNLKVLVQIDLSMNNF-----SELFQATNEFSANNLIGR 532
G++P +G+ + L+ +DL+ N F + +F+ + + +AN + G+
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 168/566 (29%), Positives = 232/566 (40%), Gaps = 118/566 (20%)
Query: 48 VTCDVRTHRVTAL---NISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASI----- 99
++ DV R L ++S N + IP LG+ S+LQ LD+S N SG +I
Sbjct: 190 ISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 100 ---FNI--NMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEI-GNVTKLIGLYLRGNQL 153
NI N F G IP K L+ +SL+ N F+G IP + G L GL L GN
Sbjct: 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 154 QGEIPXX-XXXXXXXXXXXXQNNFLTGTXXXXXXXXXXXXXXXXXXXXXTGTIPYAG--N 210
G +P NNF +G +P
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNF-------------------------SGELPMDTLLK 341
Query: 211 LFQLQWLDLSDNQLSGSFP-SFKFKMPRLQVLDLSVNGLSGELPANFCNNFP-FLEELYL 268
+ L+ LDLS N+ SG P S L LDLS N SG + N C N L+ELYL
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 269 SKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXXXXXXXXXX 328
N F G+IP L+NCS L L L FN SG IP +G+L+KL L L
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 329 XX-----------------------XXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFW 365
C L + SLSNN L G +P+ IG L +++
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILK 520
Query: 366 IVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITL----GKLQK------------- 408
+ + + SG IP E+ + +LI + L N NGTIP + GK+
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 409 -------------LQLLSFEDNQLEGSIPNDLCRL----------------AALFQLDLG 439
L+ QL + C + ++ LD+
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 440 GNMLSGFIPACFGNLTYLKKLNLGSNQLT-STSSTLWNIKYILYLNLSSNSFTGSLPLGI 498
NMLSG+IP G++ YL LNLG N ++ S + +++ + L+LSSN G +P +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 499 GNLKVLVQIDLSMNNFSELFQATNEF 524
L +L +IDLS NN S +F
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPEMGQF 726
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 162/586 (27%), Positives = 256/586 (43%), Gaps = 118/586 (20%)
Query: 28 PANFLARNWNTSSSVCNWTGVTCDVRTHRVTALNISGL---------------------- 65
P L +W+++ + C + GVTC R +VT++++S
Sbjct: 25 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 66 -----NLTGTIPSELGNLSSLQTLDLSFNWFSGSIPA----------SIFNINM----FH 106
++ G++ S +SL +LDLS N SG + N++ F
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 107 GKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNV-----TKLIGLYLRGNQLQGEIPXXX 161
GK+ L L + LS N SG +G V +L L + GN++ G++
Sbjct: 142 GKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV-DVS 197
Query: 162 XXXXXXXXXXXQNNFLTGTXXXXXXXXXXXXXXXXXXXXXTGTIPYAGNLFQLQWLDLSD 221
NNF TG IP+ G+ LQ LD+S
Sbjct: 198 RCVNLEFLDVSSNNFSTG-------------------------IPFLGDCSALQHLDISG 232
Query: 222 NQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF--LEELYLSKNMFYGEIPS 279
N+LSG F L++L++S N G +P P L+ L L++N F GEIP
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-----LPLKSLQYLSLAENKFTGEIPD 287
Query: 280 DLAN-CSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXXCKYLKY 338
L+ C L L L N+F GA+P G+ + LE L L + LK
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 339 FSLSNNLLDGILPRAIGNLSQSI--------------------------EEFWIVSCNIS 372
LS N G LP ++ NLS S+ +E ++ + +
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 373 GGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAA 432
G IP +SN + L++++L N L+GTIP +LG L KL+ L N LEG IP +L +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 433 LFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLT-STSSTLWNIKYILYLNLSSNSFT 491
L L L N L+G IP+ N T L ++L +N+LT + ++ + L LS+NSF+
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 492 GSLPLGIGNLKVLVQIDLSMNNF-----SELFQATNEFSANNLIGR 532
G++P +G+ + L+ +DL+ N F + +F+ + + +AN + G+
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 132/318 (41%), Gaps = 48/318 (15%)
Query: 13 DQQALLSLKGHVTEDPANFLARNWNTSSSVCN--WTGVTCDV--RTHRVTALNISGLNLT 68
D+QALL +K + +P +W ++ CN W GV CD +T+RV L++SGLNL
Sbjct: 7 DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 69 GT--IPSELGNLSSLQTLDLS-FNWFSGSIPASIFNINMFH----------GKIPSTLSN 115
IPS L NL L L + N G IP +I + H G IP LS
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 116 CKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPXXXXXXXXXXXXXXQNN 175
K L + S N SGT+P I ++ L+G+ GN++ G IP
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-------- 175
Query: 176 FLTGTXXXXXXXXXXXXXXXXXXXXXTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKM 235
F + T TG IP L ++DLS N L G
Sbjct: 176 FTSMT---------------ISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD 220
Query: 236 PRLQVLDLSVNGLSGEL-PANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQF 294
Q + L+ N L+ +L N L L L N YG +P L +L L + F
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKN---LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 295 NNFSGAIPKEIGNLTKLE 312
NN G IP+ GNL + +
Sbjct: 278 NNLCGEIPQG-GNLQRFD 294
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 103/211 (48%), Gaps = 29/211 (13%)
Query: 338 YFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNG 397
Y NNL+ G +P AI L+Q + +I N+SG IP+ +S + L+ + N L+G
Sbjct: 82 YIGGINNLV-GPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139
Query: 398 TIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALF-QLDLGGNMLSGFIPACFGNLTY 456
T+P ++ L L ++F+ N++ G+IP+ + LF + + N L+G IP F NL
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198
Query: 457 LKKLNLGSNQLTSTSSTLW----NIKYILY--------------------LNLSSNSFTG 492
L ++L N L +S L+ N + I L+L +N G
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258
Query: 493 SLPLGIGNLKVLVQIDLSMNNF-SELFQATN 522
+LP G+ LK L +++S NN E+ Q N
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 93/236 (39%), Gaps = 11/236 (4%)
Query: 237 RLQVLDLSVNGLSGELP-ANFCNNFPFLEELYLSK-NMFYGEIPSDLANCSYLRILVLQF 294
R+ LDLS L P + N P+L LY+ N G IP +A + L L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 295 NNFSGAIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAI 354
N SGAIP + + L LD L + N + G +P +
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL-PNLVGITFDGNRISGAIPDSY 169
Query: 355 GNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSF 414
G+ S+ I ++G IP +NL NL + L N L G + G + Q +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 415 EDNQLEGSIPNDLCRLAA---LFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQL 467
N L DL ++ L LDL N + G +P L +L LN+ N L
Sbjct: 229 AKNSLAF----DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 31/224 (13%)
Query: 203 GTIPYA-GNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFP 261
G IP A L QL +L ++ +SG+ P F ++ L LD S N LSG LP + ++ P
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLP 149
Query: 262 FLEELYLSKNMFYGEIPSDLANCSYL-RILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXX 320
L + N G IP + S L + + N +G IP NL
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------- 198
Query: 321 XXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEIS 380
L + LS N+L+G G+ ++ ++ + +++ + ++
Sbjct: 199 ---------------LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDL-GKVG 241
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIP 424
NL + L N++ GT+P L +L+ L L+ N L G IP
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFK-SFDIECDM 571
+ EL A++ FS N++GRGG G VYK R+ DGT VAVK + + + F E +M
Sbjct: 29 SLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVEM 88
Query: 572 MKRIRHRNLIKIISSCSNDDFKALPLLKEDQSLTQTQTLATIGYMA 617
+ HRNL+++ C +T T+ L YMA
Sbjct: 89 ISMAVHRNLLRLRGFC----------------MTPTERLLVYPYMA 118
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFK-SFDIECDM 571
+ EL A++ F N++GRGG G VYK R+ DG VAVK + + + F E +M
Sbjct: 21 SLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVEM 80
Query: 572 MKRIRHRNLIKIISSCSNDDFKALPLLKEDQSLTQTQTLATIGYMA 617
+ HRNL+++ C +T T+ L YMA
Sbjct: 81 ISMAVHRNLLRLRGFC----------------MTPTERLLVYPYMA 110
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Query: 259 NFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQX 318
N L ++ ++ N P LAN + L L L N + P + NLT L +L+L
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 319 XXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISG-GIPE 377
L+ S S+N + + P A NL+ ++E I S +S +
Sbjct: 139 NTISDISALSG---LTSLQQLSFSSNQVTDLKPLA--NLT-TLERLDISSNKVSDISVLA 192
Query: 378 EISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLD 437
+++NL +LIA N+++ P LG L L LS NQL+ L L L LD
Sbjct: 193 KLTNLESLIAT---NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 245
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLG 497
L N +S P LT L +L LG+NQ+++ S L + + L L+ N P
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-- 300
Query: 498 IGNLKVLVQIDLSMNNFSEL 517
I NLK L + L NN S++
Sbjct: 301 ISNLKNLTYLTLYFNNISDI 320
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Query: 259 NFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQX 318
N L ++ ++ N P LAN + L L L N + P + NLT L +L+L
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 319 XXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISG-GIPE 377
L+ S S+N + + P A NL+ ++E I S +S +
Sbjct: 139 NTISDISALSG---LTSLQQLSFSSNQVTDLKPLA--NLT-TLERLDISSNKVSDISVLA 192
Query: 378 EISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLD 437
+++NL +LIA N+++ P LG L L LS NQL+ L L L LD
Sbjct: 193 KLTNLESLIAT---NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 245
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLG 497
L N +S P LT L +L LG+NQ+++ S L + + L L+ N P
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-- 300
Query: 498 IGNLKVLVQIDLSMNNFSEL 517
I NLK L + L NN S++
Sbjct: 301 ISNLKNLTYLTLYFNNISDI 320
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 116/260 (44%), Gaps = 23/260 (8%)
Query: 259 NFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQX 318
N L ++ ++ N P LAN + L L L N + P + NLT L +L+L
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 319 XXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISG-GIPE 377
+ L + S+N + + P A NL+ ++E I S +S +
Sbjct: 139 NTISDISALSGLTSLQQLNF---SSNQVTDLKPLA--NLT-TLERLDISSNKVSDISVLA 192
Query: 378 EISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLD 437
+++NL +LIA N+++ P LG L L LS NQL+ L L L LD
Sbjct: 193 KLTNLESLIAT---NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 245
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLG 497
L N +S P LT L +L LG+NQ+++ S L + + L L+ N P
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-- 300
Query: 498 IGNLKVLVQIDLSMNNFSEL 517
I NLK L + L NN S++
Sbjct: 301 ISNLKNLTYLTLYFNNISDI 320
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 10/152 (6%)
Query: 379 ISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDL 438
+ NLT L+ I + N++ P L L L L+ +NQ+ P L L L +L+L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL 136
Query: 439 GGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTG-SLPLG 497
N +S + LT L++LN SNQ+T L N+ + L++SSN + S+
Sbjct: 137 SSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISVLAK 193
Query: 498 IGNLKVLVQIDLSMNNFSELFQATN--EFSAN 527
+ NL+ L+ + +++ + L TN E S N
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLN 225
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 114/260 (43%), Gaps = 24/260 (9%)
Query: 259 NFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQX 318
N L ++ ++ N P LAN + L L L N + P + NLT L +L+L
Sbjct: 87 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 142
Query: 319 XXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISG-GIPE 377
+ L + + +L + + NL+ ++E I S +S +
Sbjct: 143 NTISDISALSGLTSLQQLSFGNQVTDL------KPLANLT-TLERLDISSNKVSDISVLA 195
Query: 378 EISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLD 437
+++NL +LIA N+++ P LG L L LS NQL+ L L L LD
Sbjct: 196 KLTNLESLIAT---NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 248
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLG 497
L N +S P LT L +L LG+NQ+++ S L + + L L+ N P
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-- 303
Query: 498 IGNLKVLVQIDLSMNNFSEL 517
I NLK L + L NN S++
Sbjct: 304 ISNLKNLTYLTLYFNNISDI 323
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 114/260 (43%), Gaps = 24/260 (9%)
Query: 259 NFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQX 318
N L ++ ++ N P LAN + L L L N + P + NLT L +L+L
Sbjct: 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143
Query: 319 XXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISG-GIPE 377
+ L + + +L + + NL+ ++E I S +S +
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDL------KPLANLT-TLERLDISSNKVSDISVLA 196
Query: 378 EISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLD 437
+++NL +LIA N+++ P LG L L LS NQL+ L L L LD
Sbjct: 197 KLTNLESLIAT---NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 249
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLG 497
L N +S P LT L +L LG+NQ+++ S L + + L L+ N P
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-- 304
Query: 498 IGNLKVLVQIDLSMNNFSEL 517
I NLK L + L NN S++
Sbjct: 305 ISNLKNLTYLTLYFNNISDI 324
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 114/260 (43%), Gaps = 24/260 (9%)
Query: 259 NFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQX 318
N L ++ ++ N P LAN + L L L N + P + NLT L +L+L
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 319 XXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISG-GIPE 377
+ L + + +L + + NL+ ++E I S +S +
Sbjct: 139 NTISDISALSGLTSLQQLNFGNQVTDL------KPLANLT-TLERLDISSNKVSDISVLA 191
Query: 378 EISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLD 437
+++NL +LIA N+++ P LG L L LS NQL+ L L L LD
Sbjct: 192 KLTNLESLIAT---NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 244
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLG 497
L N +S P LT L +L LG+NQ+++ S L + + L L+ N P
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-- 299
Query: 498 IGNLKVLVQIDLSMNNFSEL 517
I NLK L + L NN S++
Sbjct: 300 ISNLKNLTYLTLYFNNISDI 319
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 382 LTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLC-RLAALFQLDLGG 440
LT+L +YLGGNKL KL L L+ NQL+ S+PN + +L L +L L
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 441 NMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSLP 495
N L F LT LK L L NQL S +++ + + Y+ L N + + P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 397 GTIPITLGKLQKLQLLSFEDNQLEGSIPNDLC-RLAALFQLDLGGNMLSGFIPACFGNLT 455
G + G + L E N L+ S+PN + L +L QL LGGN L F LT
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 456 YLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSLPLGI 498
L LNL +NQL S + +++ + + L L++N SLP G+
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGV 119
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 114/260 (43%), Gaps = 24/260 (9%)
Query: 259 NFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQX 318
N L ++ ++ N P LAN + L L L N + P + NLT L +L+L
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 319 XXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISG-GIPE 377
+ L + + +L + + NL+ ++E I S +S +
Sbjct: 139 NTISDISALSGLTSLQQLNFGNQVTDL------KPLANLT-TLERLDISSNKVSDISVLA 191
Query: 378 EISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLD 437
+++NL +LIA N+++ P LG L L LS NQL+ L L L LD
Sbjct: 192 KLTNLESLIAT---NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 244
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLG 497
L N +S P LT L +L LG+NQ+++ S L + + L L+ N P
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-- 299
Query: 498 IGNLKVLVQIDLSMNNFSEL 517
I NLK L + L NN S++
Sbjct: 300 ISNLKNLTYLTLYFNNISDI 319
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Query: 393 NKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFG 452
+K + ++P G Q+L DNQ+ P L L +L LG N L F
Sbjct: 28 SKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85
Query: 453 NLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSM 511
+LT L L+LG+NQLT S +++ + ++ L + N T LP GI L L + L
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144
Query: 512 NNFSEL 517
N +
Sbjct: 145 NQLKSI 150
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 376 PEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQ 435
P +L NL +YLG N+L G +P+ G L L+
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPV--GVFDSLTQLTV--------------------- 92
Query: 436 LDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLP 495
LDLG N L+ A F L +LK+L + N+LT + + ++ +L L N S+P
Sbjct: 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIP 151
Query: 496 LG 497
G
Sbjct: 152 HG 153
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 210 NLFQLQWLDLSDNQLSGSFPSFKFK-MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYL 268
+L L+ L L NQL G+ P F + +L VLDL N L+ LP+ + L+EL++
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 269 SKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKL 314
N E+P + ++L L L N +IP G +L L
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH--GAFDRLSSL 161
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 56/269 (20%)
Query: 259 NFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQX 318
+FP LEEL L++N+ P N LR L L+ N L+ L KLD+
Sbjct: 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113
Query: 319 XXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEE 378
LK + +N L I RA L+ S+E+ + CN++ E
Sbjct: 114 NKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEA 171
Query: 379 ISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFED---------------------- 416
+S+L LI + L +N + +L +L++L
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231
Query: 417 -----------------------------NQLEGSIPNDLCRLAALFQLDLGGNMLSGFI 447
+ +EGS+ ++L RL ++ L G L+
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQ---EIQLVGGQLAVVE 288
Query: 448 PACFGNLTYLKKLNLGSNQLTSTSSTLWN 476
P F L YL+ LN+ NQLT+ ++++
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFH 317
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 2/150 (1%)
Query: 346 LDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGK 405
LD + P + L+ + I CN++ + +L L + L N ++ L +
Sbjct: 213 LDTMTPNCLYGLN--LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 406 LQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSN 465
L +LQ + QL P L L L++ GN L+ + F ++ L+ L L SN
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Query: 466 QLTSTSSTLWNIKYILYLNLSSNSFTGSLP 495
L LW + LN + T + P
Sbjct: 331 PLACDCRLLWVFRRRWRLNFNRQQPTCATP 360
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 399 IPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLK 458
+ + G + +LL N+++ ++ L +L+L N++S P F NL L+
Sbjct: 24 VAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 459 KLNLGSNQL 467
L L SN+L
Sbjct: 84 TLGLRSNRL 92
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 67/168 (39%), Gaps = 4/168 (2%)
Query: 300 AIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQ 359
AIP I TK KLDLQ K L+ L++N L LP I +
Sbjct: 30 AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTK-LRLLYLNDNKLQ-TLPAGIFKELK 85
Query: 360 SIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQL 419
++E W+ + L NL + L N+L P L KL LS N+L
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 420 EGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQL 467
+ +L +L +L L N L F LT LK L L +NQL
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 382 LTNLIAIYLGGNKLNGTIPITLGK-LQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
LT L +YL NKL T+P + K L+ L+ L DN+L+ +L L +L L
Sbjct: 60 LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118
Query: 441 NMLSGFIPACFGNLTYLKKLNLGSNQLTS 469
N L P F +LT L L+LG N+L S
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%)
Query: 376 PEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQ 435
P +LT L + LG N+L KL L+ L +NQL+ +L L
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 436 LDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTST 470
L L N L F +L LK L L N T
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 336 LKYFSLSNNLLDGILP-RAIGNLSQSIEEFWIVSCNISGGIPEEI-SNLTNLIAIYLGGN 393
++Y +L N L I + + NL+ + I++ N +P + LTNL + L N
Sbjct: 65 VRYLALGGNKLHDISALKELTNLT-----YLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 394 KLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGN 453
+L KL L L+ NQL+ +L L +LDL N L F
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 454 LTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSLP 495
LT LK L L NQL S +++ + + Y+ L N + + P
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 427 LCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNL 485
L L L L L GN L F LT LK+L L NQL S +++ + + YLNL
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 486 SSNSFTGSLPLGI-GNLKVLVQIDLSMNNFSEL 517
+ N SLP G+ L L ++DLS N L
Sbjct: 141 AHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSL 172
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 513 NFSELFQATNEFSAN------NLIGRGGIGSVYKARIQDGTEVAVK----VFNLQYKEAF 562
+F EL TN F N +G GG G VYK + + T VAVK + ++ +E
Sbjct: 16 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELK 74
Query: 563 KSFDIECDMMKRIRHRNLIKIISSCSNDD 591
+ FD E +M + +H NL++++ S+ D
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGD 103
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 513 NFSELFQATNEFSAN------NLIGRGGIGSVYKARIQDGTEVAVK----VFNLQYKEAF 562
+F EL TN F N +G GG G VYK + + T VAVK + ++ +E
Sbjct: 10 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELK 68
Query: 563 KSFDIECDMMKRIRHRNLIKIISSCSNDD 591
+ FD E +M + +H NL++++ S+ D
Sbjct: 69 QQFDQEIKVMAKCQHENLVELLGFSSDGD 97
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 513 NFSELFQATNEFSAN------NLIGRGGIGSVYKARIQDGTEVAVK----VFNLQYKEAF 562
+F EL TN F N +G GG G VYK + + T VAVK + ++ +E
Sbjct: 16 SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELK 74
Query: 563 KSFDIECDMMKRIRHRNLIKIISSCSNDD 591
+ FD E +M + +H NL++++ S+ D
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGD 103
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 336 LKYFSLSNNLLDGILP-RAIGNLSQSIEEFWIVSCNISGGIPEEI-SNLTNLIAIYLGGN 393
++Y +L N L I + + NL+ + I++ N +P + LTNL + L N
Sbjct: 65 VRYLALGGNKLHDISALKELTNLT-----YLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 394 KLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGN 453
+L KL L L NQL+ +L L +LDL N L F
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDK 179
Query: 454 LTYLKKLNLGSNQLTSTSSTLWN 476
LT LK+L+L NQL S +++
Sbjct: 180 LTQLKQLSLNDNQLKSVPDGVFD 202
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 336 LKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEI-SNLTNLIAIYLGGNK 394
L Y L+ N L LP + + +++E +V + +P+ + LTNL +YL N+
Sbjct: 87 LTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQ 144
Query: 395 LNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNL 454
L KL L L ++NQL+ +L L QL L N L F L
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRL 204
Query: 455 TYLKKLNLGSN 465
T L + L +N
Sbjct: 205 TSLTHIWLLNN 215
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 516 ELFQATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRI 575
+L +ATN F LIG G G VYK ++DG +VA+K + + + F+ E + +
Sbjct: 33 DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 576 RHRNLIKIISSCSN 589
RH +L+ +I C
Sbjct: 93 RHPHLVSLIGFCDE 106
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 516 ELFQATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRI 575
+L +ATN F LIG G G VYK ++DG +VA+K + + + F+ E + +
Sbjct: 33 DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 576 RHRNLIKIISSCSN 589
RH +L+ +I C
Sbjct: 93 RHPHLVSLIGFCDE 106
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLI 581
E ++GRG G V KA+ + +VA+K ++ + K+F +E + R+ H N++
Sbjct: 9 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIK--QIESESERKAFIVELRQLSRVNHPNIV 65
Query: 582 KIISSCSN 589
K+ +C N
Sbjct: 66 KLYGACLN 73
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLI 581
E ++GRG G V KA+ + +VA+K ++ + K+F +E + R+ H N++
Sbjct: 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIK--QIESESERKAFIVELRQLSRVNHPNIV 64
Query: 582 KIISSCSN 589
K+ +C N
Sbjct: 65 KLYGACLN 72
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 23/284 (8%)
Query: 235 MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQF 294
+ L+ L+L+ N ++ P +N L LY+ N S L N + LR L L
Sbjct: 65 LTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNE 119
Query: 295 NNFSGAIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAI 354
+N S P + NLTK L+L L Y +++ + + + P I
Sbjct: 120 DNISDISP--LANLTKXYSLNLGANHNLSDLSPLSNXTG--LNYLTVTESKVKDVTP--I 173
Query: 355 GNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPIT-LGKLQKLQLLS 413
NL+ + + +S N + E+IS L +L +++ +N IT + +L L
Sbjct: 174 ANLT----DLYSLSLNYNQ--IEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLK 227
Query: 414 FEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSST 473
+N++ P L L+ L L++G N +S +LT LK LN+GSNQ+ S S
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKXLNVGSNQI-SDISV 282
Query: 474 LWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSEL 517
L N+ + L L++N IG L L + LS N+ +++
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 379 ISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDL 438
I LTNL + L GN++ P L L KL L N++ + L L L +L L
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYL 117
Query: 439 GGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGI 498
+ +S P NLT LNLG+N S S L N + YL ++ + P I
Sbjct: 118 NEDNISDISP--LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--I 173
Query: 499 GNLKVLVQIDLSMNNFSEL 517
NL L + L+ N ++
Sbjct: 174 ANLTDLYSLSLNYNQIEDI 192
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 209 GNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYL 268
NL QL WL++ NQ+S + K + +L+ L++ N +S + NN L L+L
Sbjct: 240 ANLSQLTWLEIGTNQIS-DINAVK-DLTKLKXLNVGSNQISD---ISVLNNLSQLNSLFL 294
Query: 269 SKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
+ N E + + L L L N+ + P + +L+K + D
Sbjct: 295 NNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLSKXDSAD 339
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 520 ATNEFSANNLIGRGGIGSVYKAR-IQDGTEVAVKVFNL-------QYKEAFKSFDIECDM 571
A NE IG+GG G V+K R ++D + VA+K L + E F+ F E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 572 MKRIRHRNLIKIISSCSN 589
M + H N++K+ N
Sbjct: 77 MSNLNHPNIVKLYGLMHN 94
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 520 ATNEFSANNLIGRGGIGSVYKAR-IQDGTEVAVKVFNL-------QYKEAFKSFDIECDM 571
A NE IG+GG G V+K R ++D + VA+K L + E F+ F E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 572 MKRIRHRNLIKI 583
M + H N++K+
Sbjct: 77 MSNLNHPNIVKL 88
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 520 ATNEFSANNLIGRGGIGSVYKAR-IQDGTEVAVKVFNL-------QYKEAFKSFDIECDM 571
A NE IG+GG G V+K R ++D + VA+K L + E F+ F E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 572 MKRIRHRNLIKI 583
M + H N++K+
Sbjct: 77 MSNLNHPNIVKL 88
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQ--YKEAFKSFDIECDMMKRIRHRNLI 581
IG G G+V++A G++VAVK+ Q + E F E +MKR+RH N++
Sbjct: 45 IGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIV 97
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQ--YKEAFKSFDIECDMMKRIRHRNLI 581
IG G G+V++A G++VAVK+ Q + E F E +MKR+RH N++
Sbjct: 45 IGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIV 97
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 74 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L NN + +P G L LE LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 271 NMFY 274
N Y
Sbjct: 182 NSLY 185
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 74 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L NN + +P G L LE LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 271 NMFY 274
N Y
Sbjct: 182 NSLY 185
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 513 NFSELFQATNEFSAN------NLIGRGGIGSVYKARIQDGTEVAVK----VFNLQYKEAF 562
+F EL TN F N G GG G VYK + + T VAVK + ++ +E
Sbjct: 7 SFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEELK 65
Query: 563 KSFDIECDMMKRIRHRNLIKIISSCSNDD 591
+ FD E + + +H NL++++ S+ D
Sbjct: 66 QQFDQEIKVXAKCQHENLVELLGFSSDGD 94
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 96/249 (38%), Gaps = 58/249 (23%)
Query: 279 SDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXXCKYLKY 338
D +L LVL N S K L KL+KL
Sbjct: 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL------------------------ 107
Query: 339 FSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEI-SNLTNLIAIYLGGNKLNG 397
+S N L I P NL S+ E I I +P+ + S L N+ I +GGN L
Sbjct: 108 -YISKNHLVEIPP----NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLEN 161
Query: 398 T--------------IPITLGKL--------QKLQLLSFEDNQLEGSIPNDLCRLAALFQ 435
+ + I+ KL + L L + N+++ DL R + L++
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYR 221
Query: 436 LDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGS-- 493
L LG N + L L++L+L +N+L+ + L ++K + + L +N+ T
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281
Query: 494 ---LPLGIG 499
P+G G
Sbjct: 282 NDFCPVGFG 290
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 90/195 (46%), Gaps = 16/195 (8%)
Query: 334 KYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEI-SNLTNLIAIYLGG 392
+ L+ +S N L I P NL S+ E I I +P+ + S L N+ I +GG
Sbjct: 102 RKLQKLYISKNHLVEIPP----NLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGG 156
Query: 393 NKL--NGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPAC 450
N L +G P L KL L + +L G IP DL L +L L N +
Sbjct: 157 NPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELED 212
Query: 451 FGNLTYLKKLNLGSNQLTSTSS-TLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDL 509
+ L +L LG NQ+ + +L + + L+L +N + +P G+ +LK+L + L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271
Query: 510 SMNNFSELFQATNEF 524
NN +++ N+F
Sbjct: 272 HTNNITKV--GVNDF 284
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 75 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 126
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L NN + +P G L LE LD
Sbjct: 127 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 176
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 124 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 182
Query: 271 NMFY 274
N Y
Sbjct: 183 NSLY 186
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 74 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L NN + +P G L LE LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 271 NMFY 274
N Y
Sbjct: 182 NSLY 185
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 96 GVCYSAGRRNLKLIME 111
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 74 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L NN + +P G L LE LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 271 NMFY 274
N Y
Sbjct: 182 NSLY 185
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 36 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 96 GVCYSAGRRNLKLIME 111
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 49 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 109 GVCYSAGRRNLKLIME 124
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 19 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 79 GVCYSAGRRNLKLIME 94
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 78 GVCYSAGRRNLKLIME 93
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 78 GVCYSAGRRNLKLIME 93
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 81 GVCYSAGRRNLKLIME 96
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L RL L L L
Sbjct: 130 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSK 185
Query: 441 NMLSGF 446
N +S
Sbjct: 186 NHISDL 191
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 16 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 76 GVCYSAGRRNLKLIME 91
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 18 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 78 GVCYSAGRRNLKLIME 93
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 23 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 83 GVCYSAGRRNLKLIME 98
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 25 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 85 GVCYSAGRRNLKLIME 100
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 81 GVCYSAGRRNLKLIME 96
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 24 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 84 GVCYSAGRRNLKLIME 99
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 17 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 77 GVCYSAGRRNLKLIME 92
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 17/101 (16%)
Query: 57 VTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNC 116
+T L ++G +LT +P+E+ NLS+L+ LDLS N + +P+ L +C
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS---------------LPAELGSC 292
Query: 117 KRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEI 157
+L+ ++ T+P E GN+ L L + GN L+ +
Sbjct: 293 FQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 38/120 (31%)
Query: 238 LQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNF 297
LQ+ ++S N + FL LYL+ N E+P+++ N S LR+L L N
Sbjct: 234 LQIFNISANIFK----------YDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRL 282
Query: 298 SGAIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNL 357
+ ++P E+G+ C LKYF +N++ LP GNL
Sbjct: 283 T-SLPAELGS-------------------------CFQLKYFYFFDNMV-TTLPWEFGNL 315
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 375 IPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALF 434
+P EI NL+NL + L N+L ++P LG +L+ F DN + ++P + L L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQ 319
Query: 435 QLDLGGNMLS 444
L + GN L
Sbjct: 320 FLGVEGNPLE 329
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 433 LFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTG 492
L +L L GN L+ +PA NL+ L+ L+L N+LTS + L + + Y N T
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT- 306
Query: 493 SLPLGIGNL 501
+LP GNL
Sbjct: 307 TLPWEFGNL 315
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 233 FKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVL 292
FK L L L+ N L+ ELPA N L L LS N +P++L +C L+
Sbjct: 244 FKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYF 300
Query: 293 QFNNFSGAIPKEIGNLTKLEKLDLQ 317
F+N +P E GNL L+ L ++
Sbjct: 301 -FDNMVTTLPWEFGNLCNLQFLGVE 324
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 21 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 81 GVCYSAGRRNLKLIME 96
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 530 IGRGGIGSVYKAR---IQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKII 584
+G+G GSV R +QD T V V LQ+ +E + F+ E +++K ++H N++K
Sbjct: 22 LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 585 SSCSNDDFKALPLLKE 600
C + + L L+ E
Sbjct: 82 GVCYSAGRRNLKLIME 97
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 524 FSANNLIGRGGIGSVYKAR-IQDGTEVA---VKVFNLQYKEAFKSFDIECDMMKRIRHRN 579
F IGRG VY+A + DG VA V++F+L +A E D++K++ H N
Sbjct: 34 FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN 93
Query: 580 LIKIISSCSNDD 591
+IK +S D+
Sbjct: 94 VIKYYASFIEDN 105
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 409 LQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLT 468
+ +L+ NQL P + R + L LD G N +S P L LK LNL N+L+
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 469 STSS-TLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFS 515
S T + L+L SNS N K L+++DLS N S
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 431 AALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTS--TSSTLWNIK--YILYLNLS 486
++L +LDL N L F P CF + L L L + QL T W + I L+L+
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 487 SNSFTGSLPLGIGNLKV--LVQIDLSMNNFSEL 517
+N + LK L Q+DLS NN ++
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDV 263
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 507 IDLSMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQD-GTEVAVKVF------NLQYK 559
+DL N FQ+ ++ L+G G G V K R +D G VA+K F + K
Sbjct: 12 VDLGTENL--YFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKK 69
Query: 560 EAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
A + E ++K++RH NL+ ++ C
Sbjct: 70 IAMR----EIKLLKQLRHENLVNLLEVCKK 95
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRN 579
+ LIG+G G VY R EVA+++ +++ ++ K+F E ++ RH N
Sbjct: 33 EQLEIGELIGKGRFGQVYHGRWH--GEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHEN 90
Query: 580 LIKIISSCSNDDFKALPLLKEDQSLTQTQTLATI 613
++ + +C + P L SL + +TL ++
Sbjct: 91 VVLFMGACMSP-----PHLAIITSLCKGRTLYSV 119
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 74 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L N+ + +P G L LE LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPA--GLLNGLENLD 175
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQE 181
Query: 271 NMFY 274
N Y
Sbjct: 182 NSLY 185
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 74 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L N + +P G L LE LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 271 NMFY 274
N Y
Sbjct: 182 NSLY 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 74 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L N + +P G L LE LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 271 NMFY 274
N Y
Sbjct: 182 NSLY 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 74 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L N + +P G L LE LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 271 NMFY 274
N Y
Sbjct: 182 NSLY 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 203 GTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF 262
GT+P G L DLS NQL S P +P L VLD+S N L+ LP
Sbjct: 74 GTLPVLGTL------DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGE 125
Query: 263 LEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315
L+ELYL N P L L L L N + +P G L LE LD
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 211 LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK 270
L +LQ L L N+L P P+L+ L L+ N L+ ELPA N L+ L L +
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQE 181
Query: 271 NMFY 274
N Y
Sbjct: 182 NSLY 185
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%)
Query: 375 IPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALF 434
+P+E+SN +L I L N+++ + + +L L N+L P L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 435 QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLW 475
L L GN +S F +L+ L L +G+N L + W
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 33/114 (28%)
Query: 334 KYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGN 393
K+L LSNN I LS + SN+T L+ + L N
Sbjct: 54 KHLTLIDLSNN--------RISTLSN-----------------QSFSNMTQLLTLILSYN 88
Query: 394 KLNGTIPITLGKLQKLQLLSFEDNQL----EGSIPNDLCRLAALFQLDLGGNML 443
+L P T L+ L+LLS N + EG+ ND L+AL L +G N L
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF-ND---LSALSHLAIGANPL 138
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+LT L +YLGGN+L +L KL+ L NQL+ +L L L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 441 NMLSGFIPACFGNLTYLKKLNLGSNQL-TSTSSTLWNIKYI 480
N L F L L+ + L NQ S TL+ ++I
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWI 205
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 382 LTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLD---L 438
LT L + L N+L L +L L +NQL S+P L L QLD L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLP--LGVFDHLTQLDKLYL 114
Query: 439 GGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSLPLG 497
GGN L F LT LK+L L +NQL S + ++ + + L+LS+N S+P G
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173
Query: 498 -IGNLKVLVQIDLSMNNF 514
L L I L N F
Sbjct: 174 AFDRLGKLQTITLFGNQF 191
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 371 ISGGIPEEISNLTNLIAIYLGGNKLNGTIPI-TLGKLQKLQLLSFEDNQLEGSIPNDLC- 428
+S G+ +LT L + L N+L ++P+ L +L L NQL+ S+P+ +
Sbjct: 74 LSAGV---FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFD 128
Query: 429 RLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTS 469
RL L +L L N L F LT L+ L+L +NQL S
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 435 QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLW-NIKYILYLNLSSNSFTGS 493
+LDL L+ A F LT L LNL NQL + S+ ++ ++ + L L++N S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-AS 97
Query: 494 LPLGIGNLKVLVQID 508
LPLG+ L Q+D
Sbjct: 98 LPLGV--FDHLTQLD 110
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 403 LGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNL 462
G+L L L + NQL G PN + + +L LG N + F L LK LNL
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 463 GSNQLTST-SSTLWNIKYILYLNLSSNSF 490
NQ++ + ++ + LNL+SN F
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 382 LTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLD---L 438
LT L + L N+L L +L L +NQL S+P L L QLD L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLP--LGVFDHLTQLDKLYL 114
Query: 439 GGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSLPLG 497
GGN L F LT LK+L L +NQL S + ++ + + L+LS+N S+P G
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+LT L +YLGGN+L +L KL+ L NQL+ +L L L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 441 NMLSGFIPACFGNLTYLKKLNLGSNQ 466
N L F L L+ + L NQ
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 371 ISGGIPEEISNLTNLIAIYLGGNKLNGTIPI-TLGKLQKLQLLSFEDNQLEGSIPNDLC- 428
+S G+ +LT L + L N+L ++P+ L +L L NQL+ S+P+ +
Sbjct: 74 LSAGV---FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFD 128
Query: 429 RLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTS 469
RL L +L L N L F LT L+ L+L +NQL S
Sbjct: 129 RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 435 QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLW-NIKYILYLNLSSNSFTGS 493
+LDL L+ A F LT L LNL NQL + S+ ++ ++ + L L++N S
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-AS 97
Query: 494 LPLGIGNLKVLVQID 508
LPLG+ L Q+D
Sbjct: 98 LPLGV--FDHLTQLD 110
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 127 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSK 182
Query: 441 NMLSGFIPAC 450
N +S C
Sbjct: 183 NHISDLRALC 192
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 410 QLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTS 469
Q+L DNQ+ P RL L +LDL N L+ F LT L +L+L NQL S
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 470 TSSTLW-NIKYILYLNLSSNSF 490
+ N+K + ++ L +N +
Sbjct: 101 IPRGAFDNLKSLTHIWLLNNPW 122
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 373 GGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAA 432
+P I T ++ YL N++ P +L +L L ++NQL +L
Sbjct: 30 ASVPTGIPTTTQVL--YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 433 LFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLN 484
L QL L N L F NL L + L +N S ILYL+
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD------ILYLS 133
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 30/60 (50%)
Query: 410 QLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTS 469
Q+L DNQ+ P RL L +LDL N L+ F LT L +L+L NQL S
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 373 GGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAA 432
+P I T ++ YL N++ P +L +L L ++NQL +L
Sbjct: 22 ASVPTGIPTTTQVL--YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 433 LFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLN 484
L QL L N L F NL L + L +N S ILYL+
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD------ILYLS 125
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTEV--AVKVFNLQYKEAFKSFDIECDMMKRIRHRNLI 581
++ N IGRG G V K +Q GT + A K + E F E ++MK + H N+I
Sbjct: 28 YTLENTIGRGSWGEV-KIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNII 86
Query: 582 KIISSCSND 590
++ + ++
Sbjct: 87 RLYETFEDN 95
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTEV--AVKVFNLQYKEAFKSFDIECDMMKRIRHRNLI 581
++ N IGRG G V K +Q GT + A K + E F E ++MK + H N+I
Sbjct: 11 YTLENTIGRGSWGEV-KIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNII 69
Query: 582 KIISSCSND 590
++ + ++
Sbjct: 70 RLYETFEDN 78
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 393 NKLNGTIPITLGKLQKLQLLSFEDNQLEG---------------SIPNDLCRLAALFQLD 437
N++ + LG+L++L +S + EG IPN L L L +LD
Sbjct: 157 NRIPSLRRLDLGELKRLSYIS--EGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELD 213
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLW-NIKYILYLNLSSNSFT 491
L GN LS P F L +L+KL + +Q+ + N++ ++ +NL+ N+ T
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 56/195 (28%)
Query: 204 TIPYAGNLF--QLQWLDLSDNQLSGSFPSFKF-KMPRLQVLDLSVNGLSGELPANFCNNF 260
TIP ++ +L+ L L +N + S PS+ F ++P L+ LDL GEL
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL------GELK------- 171
Query: 261 PFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXX 320
Y+S+ F G L+N YL + + +EI NLT L KLD
Sbjct: 172 ---RLSYISEGAFEG-----LSNLRYLNLAMCNL--------REIPNLTPLIKLD----- 210
Query: 321 XXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEIS 380
LS N L I P + L +++ W++ I
Sbjct: 211 -----------------ELDLSGNHLSAIRPGSFQGLMH-LQKLWMIQSQIQVIERNAFD 252
Query: 381 NLTNLIAIYLGGNKL 395
NL +L+ I L N L
Sbjct: 253 NLQSLVEINLAHNNL 267
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 129 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 441 NMLS 444
N +S
Sbjct: 185 NHIS 188
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 367 VSCNISG------GIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLE 420
+ CN G GIP + L L NKL KL +L LS NQ++
Sbjct: 12 IRCNSKGLTSVPTGIPSSATRLE------LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65
Query: 421 GSIPNDLC-RLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IK 478
S+P+ + +L L L L N L F LT LK+L L +NQL S +++ +
Sbjct: 66 -SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124
Query: 479 YILYLNLSSNSFTGSLP 495
+ + L +N + S P
Sbjct: 125 SLQKIWLHTNPWDCSCP 141
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 132 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 441 NMLS 444
N +S
Sbjct: 188 NHIS 191
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 410 QLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTS 469
Q+L DN++ P RL L +LDL N L+ F LT L +L+L NQL S
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 373 GGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAA 432
+P I T ++ YL N++ P +L +L L ++NQL +L
Sbjct: 22 ASVPTGIPTTTQVL--YLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 433 LFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLN 484
L QL L N L F NL L + L +N S ILYL+
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSD------ILYLS 125
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 507 IDLSMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSF 565
+D S N+ + + + + +G G G VY+ + + VAVK E + F
Sbjct: 3 MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEF 61
Query: 566 DIECDMMKRIRHRNLIKIISSCSND 590
E +MK I+H NL++++ C+ +
Sbjct: 62 LKEAAVMKEIKHPNLVQLLGVCTRE 86
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 130 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 185
Query: 441 NMLSGF 446
N +S
Sbjct: 186 NHISDL 191
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 507 IDLSMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSF 565
+D S N+ + + + + +G G G VY+ + + VAVK E + F
Sbjct: 3 MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEF 61
Query: 566 DIECDMMKRIRHRNLIKIISSCSND 590
E +MK I+H NL++++ C+ +
Sbjct: 62 LKEAAVMKEIKHPNLVQLLGVCTRE 86
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 152 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 207
Query: 441 NMLSGF 446
N +S
Sbjct: 208 NHISDL 213
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 507 IDLSMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSF 565
+D S N+ + + + + +G G G VY+ + + VAVK E + F
Sbjct: 3 MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEF 61
Query: 566 DIECDMMKRIRHRNLIKIISSCSND 590
E +MK I+H NL++++ C+ +
Sbjct: 62 LKEAAVMKEIKHPNLVQLLGVCTRE 86
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 507 IDLSMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSF 565
+D S N+ + + + + +G G G VY+ + + VAVK E + F
Sbjct: 3 MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEF 61
Query: 566 DIECDMMKRIRHRNLIKIISSCSND 590
E +MK I+H NL++++ C+ +
Sbjct: 62 LKEAAVMKEIKHPNLVQLLGVCTRE 86
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 507 IDLSMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSF 565
+D S N+ + + + + +G G G VY+ + + VAVK E + F
Sbjct: 3 MDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEF 61
Query: 566 DIECDMMKRIRHRNLIKIISSCSND 590
E +MK I+H NL++++ C+ +
Sbjct: 62 LKEAAVMKEIKHPNLVQLLGVCTRE 86
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 132 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 441 NMLSGF 446
N +S
Sbjct: 188 NHISDL 193
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 437 DLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTS-TSSTLWNIKYILYLNLSSNSFTGSLP 495
DL + + + + F + T L++L L N++ + W + ++L LNLS N F GS+
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSID 339
Query: 496 LGI-GNLKVLVQIDLSMNNFSEL 517
+ NL L +DLS N+ L
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRAL 362
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 21/139 (15%)
Query: 393 NKLNGTIPITLGKLQKLQLLSFEDNQLEG---------------SIPNDLCRLAALFQLD 437
N++ + + LG+L+KL+ +S + EG +PN L L L +L+
Sbjct: 168 NRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELE 224
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSLPL 496
+ GN P F L+ LKKL + ++Q++ ++ + ++ LNL+ N+ + SLP
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH 283
Query: 497 GI-GNLKVLVQIDLSMNNF 514
+ L+ LV++ L N +
Sbjct: 284 DLFTPLRYLVELHLHHNPW 302
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 521 TNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNL--QYKEAFKSFDIECDMMKRIRHR 578
+E + IG G G+VYK + +VAVK+ + E F++F E ++++ RH
Sbjct: 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHV 92
Query: 579 NLIKIISSCSNDDFKALPLLKEDQSL 604
N++ + + D+ + E SL
Sbjct: 93 NILLFMGYMTKDNLAIVTQWCEGSSL 118
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 107/295 (36%), Gaps = 51/295 (17%)
Query: 229 PSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLR 288
P+ K + LQ L+ G G LP+ + P L EL+LS N + LR
Sbjct: 79 PTCKIQKLSLQNCSLTEAG-CGVLPSTL-RSLPTLRELHLSDNPLGD---------AGLR 127
Query: 289 ILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXXXXXXXX---XXXXXXCKYLKYFSLSNNL 345
+L G + + LEKL L+ + LK ++SNN
Sbjct: 128 LLC------EGLLDPQC----HLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNND 177
Query: 346 LDGILPRAIGN-LSQSIEEFWIVSCNISGGIPEEISNLTNLIA-------IYLGGNKLNG 397
+ R +G L+ S + + G P +L ++A + LG N L
Sbjct: 178 IGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGD 237
Query: 398 T-----IPITLGKLQKLQLLSFEDNQLEGSIPNDLCRL----AALFQLDLGGNML----- 443
P L +L+ L + + S DLCR+ L +L L GN L
Sbjct: 238 AGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGA 297
Query: 444 -----SGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGS 493
S P C ++K +L + S L K++L L LSSN S
Sbjct: 298 RLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDS 352
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 393 NKLNGTIPITLGKLQKLQLLSFEDNQLEG---------------SIPNDLCRLAALFQLD 437
N++ + LG+L++L+ +S + EG IPN L L L +L+
Sbjct: 128 NRVPSLRRLDLGELKRLEYIS--EAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELE 184
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLW-NIKYILYLNLSSNSFTGSLPL 496
L GN L P F LT L+KL L Q+ + + ++K + LNLS N+ SLP
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPH 243
Query: 497 GI-GNLKVLVQIDLSMN 512
+ L L ++ L+ N
Sbjct: 244 DLFTPLHRLERVHLNHN 260
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 127 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 182
Query: 441 NMLSGF 446
N +S
Sbjct: 183 NHISDL 188
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 20/119 (16%)
Query: 393 NKLNGTIPITLGKLQKLQLLSFEDNQLEG---------------SIPNDLCRLAALFQLD 437
N++ + LG+L++L+ +S + EG IPN L L L +L+
Sbjct: 128 NRVPSLRRLDLGELKRLEYIS--EAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELE 184
Query: 438 LGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLW-NIKYILYLNLSSNSFTGSLP 495
L GN L P F LT L+KL L Q+ + + ++K + LNLS N+ SLP
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLP 242
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 150 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 441 NMLSGF 446
N +S
Sbjct: 206 NHISDL 211
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 150 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 441 NMLSGF 446
N +S
Sbjct: 206 NHISDL 211
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440
+L L ++YLG NK+ T L +L KL LS EDNQ+ +P L L L L L
Sbjct: 150 HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 205
Query: 441 NMLSGF 446
N +S
Sbjct: 206 NHISDL 211
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 510 SMNNFSELFQATNEFSANNLIGRGGIGSVYKARI------QDGTEVAVKVFNLQYKEAFK 563
+M+ F + + N L G G G V+ A QD VAVK A K
Sbjct: 2 AMDTFVQHIKRHNIVLKREL-GEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARK 60
Query: 564 SFDIECDMMKRIRHRNLIKIISSCSNDD 591
F E +++ ++H +++K C D
Sbjct: 61 DFHREAELLTNLQHEHIVKFYGVCVEGD 88
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 371 ISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRL 430
+ GIP + L +L N++ P L LQ L F N+L +L
Sbjct: 27 VPAGIPTDKQRL------WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80
Query: 431 AALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSN 465
L QLDL N L F NL L + L +N
Sbjct: 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 362 EEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEG 421
+ W+ + I+ P +L NL +Y NKL KL +L L DN L+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK- 94
Query: 422 SIP 424
SIP
Sbjct: 95 SIP 97
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQD-GTEVAVKVFN 555
N+FS + +IGRGG G VY R D G A+K +
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQD-GTEVAVKVFN 555
N+FS + +IGRGG G VY R D G A+K +
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQD-GTEVAVKVFN 555
N+FS + +IGRGG G VY R D G A+K +
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQD-GTEVAVKVFN 555
N+FS + +IGRGG G VY R D G A+K +
Sbjct: 188 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 222
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 371 ISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRL 430
I G + +S+L+ LI L GN + L LQ L + L + L
Sbjct: 91 IEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147
Query: 431 AALFQLDLGGNMLSGF-IPACFGNLTYLKKLNLGSNQLTSTSST 473
L +L++ N++ F +P F NLT L+ L+L SN++ S T
Sbjct: 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 210 NLFQLQWLDLSDNQLSG-SFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYL 268
NL LQ+L+LS N+ G +FK + P+L++LD++ L + P + N L L L
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFK-ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL 431
Query: 269 SKNMFYGEIPSDLANCSYLRILVLQFNNF-SGAIPK 303
S + LA LR L LQ N+F G+I K
Sbjct: 432 SHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK 467
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 129/309 (41%), Gaps = 17/309 (5%)
Query: 210 NLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLS 269
NL + ++ DLS S +F F R+Q LDL+ L+G LP+ L++L L+
Sbjct: 259 NLQKHRFSDLS----SSTFRCFT----RVQELDLTAAHLNG-LPSGI-EGMNSLKKLVLN 308
Query: 270 KNMFYGEIPSDLANCSYLRILVLQFNNFSGAI-PKEIGNLTKLEKLDL-QXXXXXXXXXX 327
N F + A+ LR L ++ N + + + L L+KLDL
Sbjct: 309 ANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCN 368
Query: 328 XXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEE-ISNLTNLI 386
++L+Y +LS N G+ +A Q +E + ++ P NL L
Sbjct: 369 LQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ-LELLDVAFTHLHVKAPHSPFQNLHLLR 427
Query: 387 AIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLE-GSIP--NDLCRLAALFQLDLGGNML 443
+ L L+ + L LQ L+ L+ + N + GSI N L + +L L L L
Sbjct: 428 VLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNL 487
Query: 444 SGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKV 503
F L + L+L N LT S + LYLN++SN+ P + L
Sbjct: 488 LSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQ 547
Query: 504 LVQIDLSMN 512
I+LS N
Sbjct: 548 QSIINLSHN 556
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 457 LKKLNLGSNQLTS-TSSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFS 515
++ +NL ++ + +SST + L+L++ G LP GI + L ++ L+ N+F
Sbjct: 255 VESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD 313
Query: 516 ELFQ--ATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIE----C 569
+L Q A + S +L +G + ++ GT K+ NLQ + S DIE C
Sbjct: 314 QLCQINAASFPSLRDLYIKGNM-----RKLDLGTRCLEKLENLQKLDLSHS-DIEASDCC 367
Query: 570 DM-MKRIRH 577
++ +K +RH
Sbjct: 368 NLQLKNLRH 376
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 409 LQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLT 468
+ +L+ NQL + R + L LD+G N +S P L LK LNL N+L+
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 469 STS-STLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFS 515
S T + L+L SNS K L+ +DLS N S
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 403 LGKLQKLQLLSFEDNQLEGSIPNDLCR-LAALFQLDLGGNMLSGFIPACFGNLTYLKKLN 461
L L L +L+ E N + IP ++ + L L +DLG N L+ + F N LK LN
Sbjct: 542 LKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 600
Query: 462 LGSNQLTSTSSTLW 475
L N +TS ++
Sbjct: 601 LQKNLITSVEKKVF 614
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 409 LQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLT 468
+ +L+ NQL + R + L LD+G N +S P L LK LNL N+L+
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 469 STS-STLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFS 515
S T + L+L SNS K L+ +DLS N S
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 403 LGKLQKLQLLSFEDNQLEGSIPNDLCR-LAALFQLDLGGNMLSGFIPACFGNLTYLKKLN 461
L L L +L+ E N + IP ++ + L L +DLG N L+ + F N LK LN
Sbjct: 537 LKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 595
Query: 462 LGSNQLTSTSSTLW 475
L N +TS ++
Sbjct: 596 LQKNLITSVEKKVF 609
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 409 LQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLT 468
+ +L+ NQL + R + L LD+G N +S P L LK LNL N+L+
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 469 STS-STLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFS 515
S T + L+L SNS K L+ +DLS N S
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 403 LGKLQKLQLLSFEDNQLEGSIPNDLCR-LAALFQLDLGGNMLSGFIPACFGNLTYLKKLN 461
L L L +L+ E N + IP ++ + L L +DLG N L+ + F N LK LN
Sbjct: 532 LKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590
Query: 462 LGSNQLTSTSSTLW 475
L N +TS ++
Sbjct: 591 LQKNLITSVEKKVF 604
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 371 ISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRL 430
I G + +S+L+ LI L GN + L LQ L + L + L
Sbjct: 67 IEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 431 AALFQLDLGGNMLSGF-IPACFGNLTYLKKLNLGSNQLTSTSST 473
L +L++ N++ F +P F NLT L+ L+L SN++ S T
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 436 LDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSL 494
L L N ++ P F +LT L LNL NQLT+ +++ + + +L L N S+
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-KSI 103
Query: 495 PLGI-GNLKVLVQIDLSMNNF----SELFQATN----EFSANNLIGRGGIGSV 538
P+G+ NLK L I L N + S++ N S N +G GG+ +V
Sbjct: 104 PMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQHASIVNPLGNGGVDNV 156
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 531 GRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISS 586
RG G V+KA++ + VAVK+F LQ K++++S + E ++H NL++ I++
Sbjct: 24 ARGRFGCVWKAQLMNDF-VAVKIFPLQDKQSWQS-EREIFSTPGMKHENLLQFIAA 77
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Query: 371 ISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRL 430
I G + +S+L+ LI L GN + L LQ L + L + L
Sbjct: 67 IEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 431 AALFQLDLGGNMLSGF-IPACFGNLTYLKKLNLGSNQLTSTSST 473
L +L++ N++ F +P F NLT L+ L+L SN++ S T
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQL-EGSIPNDLCRLAALFQLDLG 439
+L NLI + + L L++L N E +P+ L L LDL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 440 GNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN 476
L P F +L+ L+ LN+ SNQL S +++
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 92/252 (36%), Gaps = 49/252 (19%)
Query: 212 FQLQWLDLSDNQLSGSFPSFKFK--------------------MPRLQVLDLSVNGLSGE 251
F Q L+L + + G FP+ K K +P L+ LDLS NGLS
Sbjct: 304 FGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS-- 360
Query: 252 LPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKL 311
F G + L+ L L FN +G L +L
Sbjct: 361 ---------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQL 398
Query: 312 EKLDLQXXXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNI 371
E LD Q + L Y +S+ + I N S+E + +
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 372 SGG-IPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLC-R 429
+P+ + L NL + L +L P L LQ+L+ NQL+ S+P+ + R
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDR 516
Query: 430 LAALFQLDLGGN 441
L +L ++ L N
Sbjct: 517 LTSLQKIWLHTN 528
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K AFK+ +++ +M+++ H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQGK-AFKNRELQ--IMRKLDHCNIVR 77
Query: 583 I 583
+
Sbjct: 78 L 78
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 28/230 (12%)
Query: 264 EELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXXXXX 323
+ ++L N + +C L IL L N +G LT LE+LDL
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQL- 92
Query: 324 XXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLT 383
++D R +G+L + C + P L
Sbjct: 93 --------------------RVVDPTTFRGLGHL----HTLHLDRCGLQELGPGLFRGLA 128
Query: 384 NLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCR-LAALFQLDLGGNM 442
L +YL N L T L L L N++ S+P R L +L +L L N
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQNH 187
Query: 443 LSGFIPACFGNLTYLKKLNLGSNQLTS-TSSTLWNIKYILYLNLSSNSFT 491
++ P F +L L L L +N L+ + L ++ + YL L+ N +
Sbjct: 188 VARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWV 237
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 77/205 (37%), Gaps = 6/205 (2%)
Query: 215 QWLDLSDNQLSGSFPSFKFKMPR-LQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMF 273
Q + L N++S P+ F+ R L +L L N L+G A F LE+L LS N
Sbjct: 34 QRIFLHGNRIS-YVPAASFQSCRNLTILWLHSNALAGIDAAAF-TGLTLLEQLDLSDNAQ 91
Query: 274 YGEI-PSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXX 332
+ P+ +L L L P L L+ L LQ
Sbjct: 92 LRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDL 151
Query: 333 CKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGG 392
L + L N + + A L S++ + +++ P +L L+ +YL
Sbjct: 152 -GNLTHLFLHGNRIPSVPEHAFRGL-HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 393 NKLNGTIPITLGKLQKLQLLSFEDN 417
N L+ L L+ LQ L DN
Sbjct: 210 NNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K AFK+ +++ +M+++ H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQGK-AFKNRELQ--IMRKLDHCNIVR 77
Query: 583 I 583
+
Sbjct: 78 L 78
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K AFK+ +++ +M+++ H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQGK-AFKNRELQ--IMRKLDHCNIVR 77
Query: 583 I 583
+
Sbjct: 78 L 78
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 211 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 269
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 270 MKEIKHPNLVQLLGVCTRE 288
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 62
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 63 MKEIKHPNLVQLLGVCTRE 81
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 208 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 266
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 267 MKEIKHPNLVQLLGVCTRE 285
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 5 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 63
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 64 MKEIKHPNLVQLLGVCTRE 82
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 8 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 66
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 67 MKEIKHPNLVQLLGVCTRE 85
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 62
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 63 MKEIKHPNLVQLLGVCTRE 81
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 519 QATNEFSANNLIGRGGIGSVYKAR-IQDGTEVAVKVFN 555
+ +F NL+G+G VY+A I G EVA+K+ +
Sbjct: 8 EKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMID 45
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 6 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 64
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 65 MKEIKHPNLVQLLGVCTRE 83
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 5 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 63
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 64 MKEIKHPNLVQLLGVCTRE 82
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 62
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 63 MKEIKHPNLVQLLGVCTRE 81
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 250 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 308
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 309 MKEIKHPNLVQLLGVCTRE 327
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 6 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 64
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 65 MKEIKHPNLVQLLGVCTRE 83
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 17 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 75
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 76 MKEIKHPNLVQLLGVCTRE 94
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 62
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 63 MKEIKHPNLVQLLGVCTRE 81
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 507 IDLSMNNFSELFQATNEFSANNLI-----GRGGIGSVYKA-----RIQDG-TEVAVKVFN 555
+ LS++ F L EF NL+ G G G V KA + + G T VAVK+
Sbjct: 3 LSLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLK 62
Query: 556 LQYKEA-FKSFDIECDMMKRIRHRNLIKIISSCSND 590
+ + E +++K++ H ++IK+ +CS D
Sbjct: 63 ENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD 98
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 62
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 63 MKEIKHPNLVQLLGVCTRE 81
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 6 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 64
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 65 MKEIKHPNLVQLLGVCTRE 83
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDM 571
N+ + + + + +G G G VY+ + + VAVK E + F E +
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAV 62
Query: 572 MKRIRHRNLIKIISSCSND 590
MK I+H NL++++ C+ +
Sbjct: 63 MKEIKHPNLVQLLGVCTRE 81
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 507 IDLSMNNFSELFQATNEFSANNLI-----GRGGIGSVYKA-----RIQDG-TEVAVKVFN 555
+ LS++ F L EF NL+ G G G V KA + + G T VAVK+
Sbjct: 3 LSLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLK 62
Query: 556 LQYKEA-FKSFDIECDMMKRIRHRNLIKIISSCSND 590
+ + E +++K++ H ++IK+ +CS D
Sbjct: 63 ENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD 98
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 507 IDLSMNNFSELFQATNEFSANNLI-----GRGGIGSVYKA-----RIQDG-TEVAVKVFN 555
+ LS++ F L EF NL+ G G G V KA + + G T VAVK+
Sbjct: 3 LSLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLK 62
Query: 556 LQYKEA-FKSFDIECDMMKRIRHRNLIKIISSCSND 590
+ + E +++K++ H ++IK+ +CS D
Sbjct: 63 ENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQD 98
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
Query: 375 IPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALF 434
+P++I + T I L N L + +LQ L ++E L L
Sbjct: 21 VPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 78
Query: 435 QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSS-TLWNIKYILYLNLSSNSF-TG 492
L L GN + F P F LT L+ L +L S S + + + LN++ N +
Sbjct: 79 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 138
Query: 493 SLPLGIGNLKVLVQIDLSMN 512
LP NL LV +DLS N
Sbjct: 139 KLPAYFSNLTNLVHVDLSYN 158
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY---KEAFKSFDIECDMMKRI-R 576
N+ ++IG G G V KARI +DG + + ++ K+ + F E +++ ++
Sbjct: 22 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 81
Query: 577 HRNLIKIISSCSNDDF 592
H N+I ++ +C + +
Sbjct: 82 HPNIINLLGACEHRGY 97
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 437 DLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSLP 495
D+ ML G ++ LNL ++ + SST + + L+L++ G LP
Sbjct: 239 DISSAMLKGLCEMS------VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LP 291
Query: 496 LGIGNLKVLVQIDLSMNNFSELFQ--ATNEFSANNLIGRGGIGSVY 539
G+ L +L ++ LS+N+F +L Q A N S +L RG + ++
Sbjct: 292 SGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLH 337
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 210 NLFQLQWLDLSDNQLSGSFPSFKFK-MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYL 268
NL LQ L+LS N+ G S FK P+L++LDL+ L P + N FL+ L L
Sbjct: 371 NLSHLQTLNLSHNEPLG-LQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
Query: 269 SKNMFYGEIPSDLANCSYLRILVLQFNNF-SGAIPK 303
+ LA LR L L+ N+F G I K
Sbjct: 430 TYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITK 465
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 45 WTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINM 104
W G D+ +++ + GL + E NL + D+S F ++
Sbjct: 228 WLGTFEDIDDEDISSAMLKGL---CEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTA 284
Query: 105 FHGK-IPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGN 151
H K +PS + L+ + LS+N F N L LY+RGN
Sbjct: 285 THLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKE----AFKSFDIECDMMKRIRHR 578
E + +IG GG G VY+A G EVAVK E ++ E + ++H
Sbjct: 8 ELTLEEIIGIGGFGKVYRA-FWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHP 66
Query: 579 NLIKIISSC 587
N+I + C
Sbjct: 67 NIIALRGVC 75
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY---KEAFKSFDIECDMMKRI-R 576
N+ ++IG G G V KARI +DG + + ++ K+ + F E +++ ++
Sbjct: 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84
Query: 577 HRNLIKIISSCSNDDF 592
H N+I ++ +C + +
Sbjct: 85 HPNIINLLGACEHRGY 100
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
Query: 375 IPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALF 434
+P++I + T I L N L + +LQ L ++E L L
Sbjct: 26 VPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 435 QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSS-TLWNIKYILYLNLSSNSF-TG 492
L L GN + F P F LT L+ L +L S S + + + LN++ N +
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Query: 493 SLPLGIGNLKVLVQIDLSMN 512
LP NL LV +DLS N
Sbjct: 144 KLPAYFSNLTNLVHVDLSYN 163
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY---KEAFKSFDIECDMMKRI-R 576
N+ ++IG G G V KARI +DG + + ++ K+ + F E +++ ++
Sbjct: 15 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 74
Query: 577 HRNLIKIISSCSNDDF 592
H N+I ++ +C + +
Sbjct: 75 HPNIINLLGACEHRGY 90
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 528 NLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAF 562
LIGRG G+VYK + D VAVKVF+ ++ F
Sbjct: 19 ELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNF 52
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 520 ATNEFSANNLIGRGGIGSVYKA-RIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRIRH 577
++++F +G G +VYK G VA+K L +E S I E +MK ++H
Sbjct: 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKH 62
Query: 578 RNLIKIISSCSNDDFKALPLLKEDQSLTQTQTLATIG 614
N++++ ++ L D L + T+G
Sbjct: 63 ENIVRLYDVIHTENKLTLVFEFMDNDLKKYMDSRTVG 99
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 430 LAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSN 488
L L ++ G N L FG + LK+LNL SNQL S +++ + + + L +N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Query: 489 SFTGSLP 495
+ S P
Sbjct: 229 PWDCSCP 235
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 381 NLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLC-RLAALFQLDLG 439
+L NL +I G NKL GK+ KL+ L+ NQL+ S+P+ + RL +L ++ L
Sbjct: 168 DLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQKIWLH 226
Query: 440 GN 441
N
Sbjct: 227 TN 228
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Query: 376 PEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCR-LAALF 434
P L L ++L L P L LQ L +DN L+ ++P+D R L L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 156
Query: 435 QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLW-NIKYILYLNLSSNSFTGS 493
L L GN +S F L L +L L N++ + ++ ++ L L +N+ +
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 494 LPLGIGNLKVLVQIDLSMNNF 514
+ L+ L + L+ N +
Sbjct: 217 PTEALAPLRALQYLRLNDNPW 237
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 530 IGRGGIGSVYKARI------QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKI 583
+G G G V+ A QD VAVK + A + F E +++ ++H+++++
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 584 ISSCSN 589
C+
Sbjct: 109 FGVCTE 114
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 3/141 (2%)
Query: 376 PEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCR-LAALF 434
P L L ++L L P L LQ L +DN L+ ++P+D R L L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 155
Query: 435 QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLW-NIKYILYLNLSSNSFTGS 493
L L GN +S F L L +L L N++ + ++ ++ L L +N+ +
Sbjct: 156 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215
Query: 494 LPLGIGNLKVLVQIDLSMNNF 514
+ L+ L + L+ N +
Sbjct: 216 PTEALAPLRALQYLRLNDNPW 236
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 510 SMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI 567
SM NF ++ + IG G G VYKAR + G VA+K L + E S I
Sbjct: 4 SMENFQKVEK----------IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAI 53
Query: 568 -ECDMMKRIRHRNLIKIISSCSNDDFKALPLLKEDQSLTQ 606
E ++K + H N++K++ ++ L DQ L +
Sbjct: 54 REISLLKELNHPNIVKLLDVIHTENKLYLVFEHVDQDLKK 93
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNLIKIISSC 587
IG G G VYKA+ G A+K L+ + E S I E ++K ++H N++K+
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 588 SNDDFKALPLLKEDQSLTQ 606
L DQ L +
Sbjct: 70 HTKKRLVLVFEHLDQDLKK 88
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 14 QITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 71
Query: 581 I 581
+
Sbjct: 72 L 72
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 27 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 82
Query: 583 I 583
+
Sbjct: 83 L 83
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 9 QITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 66
Query: 581 I 581
+
Sbjct: 67 L 67
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNLIKIISSC 587
IG G G VYKA+ G A+K L+ + E S I E ++K ++H N++K+
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 588 SNDDFKALPLLKEDQSLTQ 606
L DQ L +
Sbjct: 70 HTKKRLVLVFEHLDQDLKK 88
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 530 IGRGGIGSVYKARIQD-GTEVAV-KVFNLQYKEAFKSFDI-ECDMMKRIRHRNLIKIISS 586
IG+G G V+KAR + G +VA+ KV KE F + E +++ ++H N++ +I
Sbjct: 26 IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 587 C 587
C
Sbjct: 86 C 86
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 50 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 105
Query: 583 I 583
+
Sbjct: 106 L 106
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 9 QITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 66
Query: 581 I 581
+
Sbjct: 67 L 67
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 9 QITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 66
Query: 581 I 581
+
Sbjct: 67 L 67
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNLIKIISSC 587
IG G G VYKA+ G A+K L+ + E S I E ++K ++H N++K+
Sbjct: 10 IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 588 SNDDFKALPLLKEDQSLTQ 606
L DQ L +
Sbjct: 70 HTKKRLVLVFEHLDQDLKK 88
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 530 IGRGGIGSVYKARI------QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKI 583
+G G G V+ A QD VAVK + A + F E +++ ++H+++++
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 584 ISSCSN 589
C+
Sbjct: 86 FGVCTE 91
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 111
Query: 583 I 583
+
Sbjct: 112 L 112
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 536 GSVYKARIQDGTEVAVKVFNLQYKEAFKSFDI--ECDMMKRIRHRNLIKIISSCSN 589
G ++K R Q G ++ VKV ++ KS D EC ++ H N++ ++ +C +
Sbjct: 24 GELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQS 78
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 14 QITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 71
Query: 581 I 581
+
Sbjct: 72 L 72
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 60 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 115
Query: 583 I 583
+
Sbjct: 116 L 116
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 111
Query: 583 I 583
+
Sbjct: 112 L 112
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 11 QITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 68
Query: 581 I 581
+
Sbjct: 69 L 69
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 58 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 113
Query: 583 I 583
+
Sbjct: 114 L 114
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 530 IGRGGIGSVYKARI------QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKI 583
+G G G V+ A QD VAVK + A + F E +++ ++H+++++
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 584 ISSCSN 589
C+
Sbjct: 80 FGVCTE 85
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/161 (19%), Positives = 66/161 (40%), Gaps = 6/161 (3%)
Query: 266 LYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSG--AIPKEIGNLTKLEKLDLQXXXXXX 323
L ++N+F + + L+ L+LQ N + N++ LE LD+
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 324 XXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLT 383
+ + +LS+N+L G + R + + ++ + N IP+++++L
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD----LHNNRIMSIPKDVTHLQ 473
Query: 384 NLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIP 424
L + + N+L +L LQ + DN + + P
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 235 MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQF 294
M L+ LD+S+N L+ C + L LS NM G + C ++ VL
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDL 457
Query: 295 -NNFSGAIPKEIGNLTKLEKLDL 316
NN +IPK++ +L L++L++
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNV 480
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 381 NLTNLIAIYLGGNKLNG-TIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLG 439
N+++L + + N LN T + + +L+ N L GS+ C + LDL
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLH 458
Query: 440 GNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN-IKYILYLNLSSNSFTGSLP 495
N + IP +L L++LN+ SNQL S +++ + + Y+ L N + + P
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 101 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 156
Query: 583 I 583
+
Sbjct: 157 L 157
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 536 GSVYKARIQDGTEVAVKVFNLQYKEAFKSFDI--ECDMMKRIRHRNLIKIISSCSN 589
G ++K R Q G ++ VKV ++ KS D EC ++ H N++ ++ +C +
Sbjct: 24 GELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQS 78
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 530 IGRGGIGSVYKARIQD-GTEVAV-KVFNLQYKEAFKSFDI-ECDMMKRIRHRNLIKIISS 586
IG+G G V+KAR + G +VA+ KV KE F + E +++ ++H N++ +I
Sbjct: 26 IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 587 C 587
C
Sbjct: 86 C 86
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 35 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 90
Query: 583 I 583
+
Sbjct: 91 L 91
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 530 IGRGGIGSVYKARIQD-GTEVAV-KVFNLQYKEAFKSFDI-ECDMMKRIRHRNLIKIISS 586
IG+G G V+KAR + G +VA+ KV KE F + E +++ ++H N++ +I
Sbjct: 25 IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 84
Query: 587 C 587
C
Sbjct: 85 C 85
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 530 IGRGGIGSVYKARIQD-GTEVAV-KVFNLQYKEAFKSFDI-ECDMMKRIRHRNLIKIISS 586
IG+G G V+KAR + G +VA+ KV KE F + E +++ ++H N++ +I
Sbjct: 26 IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 587 C 587
C
Sbjct: 86 C 86
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 30 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 85
Query: 583 I 583
+
Sbjct: 86 L 86
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 77
Query: 583 I 583
+
Sbjct: 78 L 78
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 41 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 96
Query: 583 I 583
+
Sbjct: 97 L 97
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 222 NQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKN 271
NQL G P+F ++ +L L+L+ N ++ E+PANFC +E L + N
Sbjct: 340 NQLEGKLPAFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 388 IYLGGNKLNGTIPI--TLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSG 445
IY+G N L T P+ +L K +KL L NQLEG +P L L+L N ++
Sbjct: 310 IYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE 367
Query: 446 FIPACFGNLT-YLKKLNLGSNQL 467
IPA F T ++ L+ N+L
Sbjct: 368 -IPANFCGFTEQVENLSFAHNKL 389
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 34 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 89
Query: 583 I 583
+
Sbjct: 90 L 90
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 34 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 89
Query: 583 I 583
+
Sbjct: 90 L 90
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 77
Query: 583 I 583
+
Sbjct: 78 L 78
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 77
Query: 583 I 583
+
Sbjct: 78 L 78
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 77
Query: 583 I 583
+
Sbjct: 78 L 78
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 23 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 78
Query: 583 I 583
+
Sbjct: 79 L 79
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 502 KVLVQIDLSMNNFSELFQATNEFSANNLIGRGGIGSVYKAR-IQDGTEVAVKVFNLQYKE 560
+ L +IDLS L F L+G G G VYK R ++ G A+KV ++ E
Sbjct: 9 RSLDEIDLSA-----LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDE 63
Query: 561 AFKSFDIECDMMKRI-RHRNL 580
+ E +M+K+ HRN+
Sbjct: 64 E-EEIKQEINMLKKYSHHRNI 83
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 37 QITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 94
Query: 581 I 581
+
Sbjct: 95 L 95
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 37 QITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 94
Query: 581 I 581
+
Sbjct: 95 L 95
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 524 FSANNLIGRGGIGSVYKARIQDGTE-VAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK 582
++ +IG G G VY+A++ D E VA+K LQ K FK+ +++ +M+++ H N+++
Sbjct: 26 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FKNRELQ--IMRKLDHCNIVR 81
Query: 583 I 583
+
Sbjct: 82 L 82
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 29 QITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 86
Query: 581 I 581
+
Sbjct: 87 L 87
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNLIKIISSC 587
+G G G VYKA+ G VA+K L + E S I E ++K + H N++ +I
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI 88
Query: 588 SND 590
++
Sbjct: 89 HSE 91
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNLIKIISSC 587
+G G G VYKA+ G VA+K L + E S I E ++K + H N++ +I
Sbjct: 29 VGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVI 88
Query: 588 SND 590
++
Sbjct: 89 HSE 91
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 25 QITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 82
Query: 581 I 581
+
Sbjct: 83 L 83
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 379 ISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDL 438
++ LTNL + +G N++N P L L KL L +DN++ P L L L ++ L
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHL 208
Query: 439 GGNMLSGFIP-ACFGNL 454
N +S P A NL
Sbjct: 209 KDNQISDVSPLANLSNL 225
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 528 NLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKI 583
+IG G G V++A++ + EVA+K LQ K FK+ +++ +M+ ++H N++ +
Sbjct: 46 KVIGNGSFGVVFQAKLVESDEVAIKKV-LQDKR-FKNRELQ--IMRIVKHPNVVDL 97
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 13 QITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 70
Query: 581 I 581
+
Sbjct: 71 L 71
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 515 SELFQATNEFSANN---LIGRGGIGSVYKAR-IQDGTEVAVKVFNLQYKEAFKSFDIECD 570
S+L + E+ N ++G+G G VY R + + +A+K + + E
Sbjct: 12 SDLLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIA 71
Query: 571 MMKRIRHRNLIKIISSCSNDDF 592
+ K ++H+N+++ + S S + F
Sbjct: 72 LHKHLKHKNIVQYLGSFSENGF 93
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 36 QITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 93
Query: 581 I 581
+
Sbjct: 94 L 94
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNL 580
+ + + +G G G VY+ + + VAVK E + F E +MK I+H NL
Sbjct: 11 TDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 69
Query: 581 IKIISSCSND 590
++++ C+ +
Sbjct: 70 VQLLGVCTRE 79
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 389 YLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIP 448
Y+G L LQ L L S N +EG + L +L LDL N LS
Sbjct: 66 YIGHGDLRAC-----ANLQVLILKSSRINTIEG---DAFYSLGSLEHLDLSDNHLSSLSS 117
Query: 449 ACFGNLTYLKKLNLGSN 465
+ FG L+ LK LNL N
Sbjct: 118 SWFGPLSSLKYLNLMGN 134
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNL 580
+ + IG G G+VYK + +VAVK+ N+ + ++F E ++++ RH N+
Sbjct: 25 QITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNI 82
Query: 581 I 581
+
Sbjct: 83 L 83
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNL 580
+ + + +G G G VY+ + + VAVK E + F E +MK I+H NL
Sbjct: 11 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 69
Query: 581 IKIISSCSND 590
++++ C+ +
Sbjct: 70 VQLLGVCTRE 79
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 509 LSMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFD 566
L F E FQ + IG G G VYKAR + G VA+K L + E S
Sbjct: 3 LGSPEFMENFQKVEK------IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA 56
Query: 567 I-ECDMMKRIRHRNLIKIISSCSNDD 591
I E ++K + H N++K++ ++
Sbjct: 57 IREISLLKELNHPNIVKLLDVIHTEN 82
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 530 IGRGGIGSVYKAR------IQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKI 583
+G G G V+ A +D VAVK A K F E +++ ++H +++K
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 584 ISSCSNDD 591
C + D
Sbjct: 83 YGVCGDGD 90
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 522 NEFSANNLIGRGGIGSVYKARIQDGT-EVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNL 580
+ + + +G G G VY+ + + VAVK E + F E +MK I+H NL
Sbjct: 11 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVMKEIKHPNL 69
Query: 581 IKIISSCSND 590
++++ C+ +
Sbjct: 70 VQLLGVCTRE 79
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK+IRH L+++ +
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKIRHEKLVQLYAVV 82
Query: 588 SND 590
S +
Sbjct: 83 SEE 85
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 509 LSMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFD 566
L F E FQ + IG G G VYKAR + G VA+K L + E S
Sbjct: 3 LGSPEFMENFQKVEK------IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTA 56
Query: 567 I-ECDMMKRIRHRNLIKIISSCSNDD 591
I E ++K + H N++K++ ++
Sbjct: 57 IREISLLKELNHPNIVKLLDVIHTEN 82
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 389 YLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIP 448
Y+G L LQ L L S N +EG + L +L LDL N LS
Sbjct: 40 YIGHGDLRAC-----ANLQVLILKSSRINTIEG---DAFYSLGSLEHLDLSDNHLSSLSS 91
Query: 449 ACFGNLTYLKKLNLGSN 465
+ FG L+ LK LNL N
Sbjct: 92 SWFGPLSSLKYLNLMGN 108
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 521 TNEFSANNLIGRGGIGSVYKA-RIQDGTEVAVKVFNLQYKEA--FKSFDIECDMMKRIRH 577
T+E+ IG+G V + ++ G E A K+ N + A + + E + + ++H
Sbjct: 3 TDEYQLYEDIGKGAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARICRLLKH 62
Query: 578 RNLIKIISSCSNDDFKAL 595
N++++ S S + F L
Sbjct: 63 SNIVRLHDSISEEGFHYL 80
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 516 ELFQATNEFSANNLIGRGGIGSVYKA-RIQDGTEVAVKV 553
E F+A E+ L+G+GG G+V+ R+ D +VA+KV
Sbjct: 27 EAFEA--EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKV 63
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 68 VKLLDVIHTEN 78
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 9 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 68
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 69 VKLLDVIHTEN 79
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 68 VKLLDVIHTEN 78
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 68 VKLLDVIHTEN 78
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 524 FSANNLIGRGGIGSVYKAR-IQDGTEVAVKVFNL---QYKEAFKSFDIECDMMKRIRHRN 579
FS IG G G+VY AR +++ VA+K + Q E ++ E ++++RH N
Sbjct: 56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 580 LIK 582
I+
Sbjct: 116 TIQ 118
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 68 VKLLDVIHTEN 78
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 66 VKLLDVIHTEN 76
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 64 VKLLDVIHTEN 74
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 64 VKLLDVIHTEN 74
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 8 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 67
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 68 VKLLDVIHTEN 78
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 7 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 66
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 67 VKLLDVIHTEN 77
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 64 VKLLDVIHTEN 74
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 371 ISGGIPEEISNLTNLIAIYLGGNKLN--GTIPITLGKLQKLQLLSFEDNQLEGSIPNDLC 428
++ + E +LT L + L N+L I +++ LQ L N + C
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 429 RLA-ALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSS 487
+L L++ N+L+ I C +K L+L SN++ S + ++ + LN++S
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS 453
Query: 488 NSFTGSLPLGI 498
N S+P GI
Sbjct: 454 NQL-KSVPDGI 463
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 523 EFSANNL-----IGRGGIGSVY--------KARIQDGTEVAVKVF-NLQYKEAFKSFDIE 568
EF + L +G G G V K + ++ VAVK+ + +E E
Sbjct: 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVSE 90
Query: 569 CDMMKRI-RHRNLIKIISSCSND 590
+MMK I +H+N+I ++ +C+ D
Sbjct: 91 MEMMKMIGKHKNIINLLGACTQD 113
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 7 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 66
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 67 VKLLDVIHTEN 77
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 64 VKLLDVIHTEN 74
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 66 VKLLDVIHTEN 76
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 7 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 66
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 67 VKLLDVIHTEN 77
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 7 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 66
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 67 VKLLDVIHTEN 77
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 64 VKLLDVIHTEN 74
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 66 VKLLDVIHTEN 76
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 66 VKLLDVIHTEN 76
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 6 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 65
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 66 VKLLDVIHTEN 76
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 17 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 75
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 76 EPIYIITEYMENGSLV 91
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 9 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 68
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 69 VKLLDVIHTEN 79
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 524 FSANNLIGRGGIGSVYKAR-IQDGTEVAVKVFNL---QYKEAFKSFDIECDMMKRIRHRN 579
FS IG G G+VY AR +++ VA+K + Q E ++ E ++++RH N
Sbjct: 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 580 LIK 582
I+
Sbjct: 77 TIQ 79
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 377 EEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPND--LCRLAALF 434
E NL NL + LG +K+ P L L L L ++ D L AL
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 435 QLDLGGNML-SGFIPACFGNLTYLKKLNLGSNQL 467
+LDL N + S ++ FG L LK ++ SNQ+
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 382 LTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGN 441
L++L +YL N LN P L L+ LS N+L NDL A L LD+ N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536
Query: 442 MLSGFIPACFGNLTYL 457
L P F +L+ L
Sbjct: 537 QLLAPNPDVFVSLSVL 552
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+K L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 79
Query: 588 SND 590
S +
Sbjct: 80 SEE 82
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 89
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 90 EPIYIITEYMENGSLV 105
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 88
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 89 EPIYIITEYMENGSLV 104
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 80 EPIYIITEYMENGSLV 95
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 81
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 82 EPIYIITEYMENGSLV 97
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 523 EFSANNL-----IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEA-FKSFDIE 568
EF + L +G G G V K + ++ VAVK+ E E
Sbjct: 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 90
Query: 569 CDMMKRI-RHRNLIKIISSCSND 590
+MMK I +H+N+I ++ +C+ D
Sbjct: 91 MEMMKMIGKHKNIIHLLGACTQD 113
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 29 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 87
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 88 EPIYIITEYMENGSLV 103
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 523 EFSANNL-----IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEA-FKSFDIE 568
EF + L +G G G V K + ++ VAVK+ E E
Sbjct: 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 90
Query: 569 CDMMKRI-RHRNLIKIISSCSND 590
+MMK I +H+N+I ++ +C+ D
Sbjct: 91 MEMMKMIGKHKNIINLLGACTQD 113
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 80
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 81 EPIYIITEYMENGSLV 96
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 523 EFSANNL-----IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEA-FKSFDIE 568
EF + L +G G G V K + ++ VAVK+ E E
Sbjct: 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 90
Query: 569 CDMMKRI-RHRNLIKIISSCSND 590
+MMK I +H+N+I ++ +C+ D
Sbjct: 91 MEMMKMIGKHKNIINLLGACTQD 113
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 80 EPIYIITEYMENGSLV 95
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 79
Query: 588 SND 590
S +
Sbjct: 80 SEE 82
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 80 EPIYIITEYMENGSLV 95
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 82
Query: 588 SND 590
S +
Sbjct: 83 SEE 85
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 85
Query: 590 D 590
+
Sbjct: 86 E 86
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 85
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 86 EPIYIITEYMENGSLV 101
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 16 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 72
Query: 588 SND 590
S +
Sbjct: 73 SEE 75
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 71
Query: 588 SND 590
S +
Sbjct: 72 SEE 74
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 19 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 75
Query: 588 SND 590
S +
Sbjct: 76 SEE 78
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 248
Query: 588 SND 590
S +
Sbjct: 249 SEE 251
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 82
Query: 588 SND 590
S +
Sbjct: 83 SEE 85
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 248
Query: 588 SND 590
S +
Sbjct: 249 SEE 251
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 530 IGRGGIGSVYKARIQDGTE-VAVKVFNLQYKE------AFKSFDIECDMMKRIRHRNLIK 582
+G G G VYKA E VA+K L+++E A + E ++K ++HRN+I+
Sbjct: 42 LGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIR----EVSLLKELQHRNIIE 97
Query: 583 IIS 585
+ S
Sbjct: 98 LKS 100
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 74
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 75 EPIYIITEYMENGSLV 90
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 84
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 85 EPIYIITEYMENGSLV 100
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 17 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 73
Query: 588 SND 590
S +
Sbjct: 74 SEE 76
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 248
Query: 588 SND 590
S +
Sbjct: 249 SEE 251
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 523 EFSANNL-----IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEA-FKSFDIE 568
EF + L +G G G V K + ++ VAVK+ E E
Sbjct: 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 90
Query: 569 CDMMKRI-RHRNLIKIISSCSND 590
+MMK I +H+N+I ++ +C+ D
Sbjct: 91 MEMMKMIGKHKNIITLLGACTQD 113
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 82
Query: 588 SND 590
S +
Sbjct: 83 SEE 85
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 82
Query: 588 SND 590
S +
Sbjct: 83 SEE 85
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 82
Query: 588 SND 590
S +
Sbjct: 83 SEE 85
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 523 EFSANNL-----IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEA-FKSFDIE 568
EF + L +G G G V K + ++ VAVK+ E E
Sbjct: 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 90
Query: 569 CDMMKRI-RHRNLIKIISSCSND 590
+MMK I +H+N+I ++ +C+ D
Sbjct: 91 MEMMKMIGKHKNIINLLGACTQD 113
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VAVK Q + +F E ++MK+++H+ L+++ + +
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ 79
Query: 590 DDFKALPLLKEDQSLT 605
+ + E+ SL
Sbjct: 80 EPIYIITEYMENGSLV 95
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 82
Query: 588 SND 590
S +
Sbjct: 83 SEE 85
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 523 EFSANNL-----IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEA-FKSFDIE 568
EF + L +G G G V K + ++ VAVK+ E E
Sbjct: 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 90
Query: 569 CDMMKRI-RHRNLIKIISSCSND 590
+MMK I +H+N+I ++ +C+ D
Sbjct: 91 MEMMKMIGKHKNIINLLGACTQD 113
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 82
Query: 588 SND 590
S +
Sbjct: 83 SEE 85
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 523 EFSANNL-----IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEA-FKSFDIE 568
EF + L +G G G V K + ++ VAVK+ E E
Sbjct: 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 90
Query: 569 CDMMKRI-RHRNLIKIISSCSND 590
+MMK I +H+N+I ++ +C+ D
Sbjct: 91 MEMMKMIGKHKNIINLLGACTQD 113
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 523 EFSANNL-----IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEA-FKSFDIE 568
EF + L +G G G V K + ++ VAVK+ E E
Sbjct: 31 EFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSE 90
Query: 569 CDMMKRI-RHRNLIKIISSCSND 590
+MMK I +H+N+I ++ +C+ D
Sbjct: 91 MEMMKMIGKHKNIINLLGACTQD 113
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFN--LQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
+G+G G V+ T VA+K EAF E +MK++RH L+++ +
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQ---EAQVMKKLRHEKLVQLYAVV 331
Query: 588 SND 590
S +
Sbjct: 332 SEE 334
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 227 SFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSY 286
S P+ + L+ L + + LS PA ++ P LEEL L P +
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 287 LRILVLQFNNFSGAIPKEIGNLTKLEKLDLQ 317
L+ L+L+ + +P +I LT+LEKLDL+
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 375 IPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCR-LAAL 433
I +++ N ++YLG N+ +I KL+ L+ E LEG +DL LA L
Sbjct: 894 ILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQL 953
Query: 434 FQLDLGG 440
+L+ G
Sbjct: 954 TELNYNG 960
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 530 IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRI-RHRN 579
+G G G V K + T+VAVK+ E S I E +MMK I +H+N
Sbjct: 77 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136
Query: 580 LIKIISSCSND 590
+I ++ +C+ D
Sbjct: 137 IINLLGACTQD 147
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G+G G V+ T VA+K + ++F E +MK++RH L+++ + S
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKTLKPG-NMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE 251
Query: 590 D 590
+
Sbjct: 252 E 252
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 530 IGRGGIGSVYKA-RIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISS 586
IG+G G+VY A + G EVA++ NLQ + + E +M+ ++ N++ + S
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 530 IGRGGIGSVYKAR-IQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISS 586
IG+G G+VY A + G EVA++ NLQ + + E +M+ ++ N++ + S
Sbjct: 29 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 86
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 530 IGRGGIGSVYKA-RIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISS 586
IG+G G+VY A + G EVA++ NLQ + + E +M+ ++ N++ + S
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ A T+VAVK + ++F E ++MK ++H L+K+ + +
Sbjct: 23 LGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK 81
Query: 590 D 590
+
Sbjct: 82 E 82
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 530 IGRGGIGSVYKA-RIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISS 586
IG+G G+VY A + G EVA++ NLQ + + E +M+ ++ N++ + S
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 85
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 522 NEFSANNLIGRGGIGSVYKARI--QDGTEVAVKVFNLQYKEAFKSFDI-----ECDMMKR 574
+F+ ++G+G GSV +A++ +DG+ V V V L+ + S DI E MK
Sbjct: 23 QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLK-ADIIASSDIEEFLREAACMKE 81
Query: 575 IRHRNLIKII 584
H ++ K++
Sbjct: 82 FDHPHVAKLV 91
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 517 LFQATNEFSAN----NLIGRGGIGSVYK-ARIQDGTEVAVKVFNLQYKEA--FKSFDIEC 569
+ A+ +FS N +G+G V + G E A K+ N + A F+ + E
Sbjct: 20 MMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA 79
Query: 570 DMMKRIRHRNLIKIISSCSNDDFKAL 595
+ ++++H N++++ S + F L
Sbjct: 80 RICRKLQHPNIVRLHDSIQEESFHYL 105
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 530 IGRGGIGSVYKA-RIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISS 586
IG+G G+VY A + G EVA++ NLQ + + E +M+ ++ N++ + S
Sbjct: 29 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDS 86
>pdb|1KCF|A Chain A, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
pdb|1KCF|B Chain B, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
Length = 258
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 507 IDLSMNNFSELFQATNE--------FSANNLIGRGGIGSVYKARIQDGT--EVAVKVFNL 556
IDL + NFS F + NE +S NL + G+ + Q + ++++++FN
Sbjct: 45 IDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKNGLDIQWTEDFQPSSMADLSIQLFNT 104
Query: 557 QYKEAFKSFDIECDMMKRIRHRNLIKII 584
+++ F+ +M+R R+R+ I I
Sbjct: 105 LHEK----FNPHVILMERQRYRSGIATI 128
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ A T+VAVK + ++F E ++MK ++H L+K+ + +
Sbjct: 190 LGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK 248
Query: 590 D 590
+
Sbjct: 249 E 249
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 530 IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRI-RHRN 579
+G G G V K + T+VAVK+ E S I E +MMK I +H+N
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 580 LIKIISSCSND 590
+I ++ +C+ D
Sbjct: 96 IINLLGACTQD 106
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ A T+VAVK + ++F E ++MK ++H L+K+ + +
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK 254
Query: 590 D 590
+
Sbjct: 255 E 255
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 529 LIGRGGIGSVYKAR-IQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSC 587
++G+G G VY R + + +A+K + + E + K ++H+N+++ + S
Sbjct: 15 VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSF 74
Query: 588 SNDDF 592
S + F
Sbjct: 75 SENGF 79
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 90/256 (35%), Gaps = 15/256 (5%)
Query: 238 LQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNF 297
+Q DL + + +LP P L L N D N L L+L N
Sbjct: 36 VQCSDLGLEKVPKDLP-------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 298 SGAIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNL 357
S P L KLE+L L K L+ + N + + L
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGL 144
Query: 358 SQSIE-EFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFED 416
+Q I E SG + L I + + TIP G L L +
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP--QGLPPSLTELHLDG 201
Query: 417 NQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN 476
N++ L L L +L L N +S N +L++L+L +N+L L +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 477 IKYILYLNLSSNSFTG 492
KYI + L +N+ +
Sbjct: 262 HKYIQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 90/256 (35%), Gaps = 15/256 (5%)
Query: 238 LQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNF 297
+Q DL + + +LP P L L N D N L L+L N
Sbjct: 36 VQCSDLGLEKVPKDLP-------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 298 SGAIPKEIGNLTKLEKLDLQXXXXXXXXXXXXXXXCKYLKYFSLSNNLLDGILPRAIGNL 357
S P L KLE+L L K L+ + N + + L
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKMP----KTLQELRVHENEITKVRKSVFNGL 144
Query: 358 SQSIE-EFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFED 416
+Q I E SG + L I + + TIP G L L +
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP--QGLPPSLTELHLDG 201
Query: 417 NQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWN 476
N++ L L L +L L N +S N +L++L+L +N+L L +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261
Query: 477 IKYILYLNLSSNSFTG 492
KYI + L +N+ +
Sbjct: 262 HKYIQVVYLHNNNISA 277
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 375 IPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCR-LAAL 433
I +++ N ++YLG N+ +I KL+ L+ E LEG +DL LA L
Sbjct: 886 ILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQL 945
Query: 434 FQLDLGG 440
+L+ G
Sbjct: 946 TELNYNG 952
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 530 IGRGGIGSVYKARIQD-GTEVAVKVF-NLQYKEAFKSFDI-ECDMMKRIRHRNLIKIIS 585
IG G G V+K R +D G VA+K F + K + E M+K+++H NL+ ++
Sbjct: 11 IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLE 69
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 530 IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRI-RHRN 579
+G G G V K + T+VAVK+ E S I E +MMK I +H+N
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 580 LIKIISSCSND 590
+I ++ +C+ D
Sbjct: 96 IINLLGACTQD 106
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 530 IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRI-RHRN 579
+G G G V K + T+VAVK+ E S I E +MMK I +H+N
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 580 LIKIISSCSND 590
+I ++ +C+ D
Sbjct: 96 IINLLGACTQD 106
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 530 IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRI-RHRN 579
+G G G V K + T+VAVK+ E S I E +MMK I +H+N
Sbjct: 25 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 84
Query: 580 LIKIISSCSND 590
+I ++ +C+ D
Sbjct: 85 IINLLGACTQD 95
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 530 IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRI-RHRN 579
+G G G V K + T+VAVK+ E S I E +MMK I +H+N
Sbjct: 36 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 95
Query: 580 LIKIISSCSND 590
+I ++ +C+ D
Sbjct: 96 IINLLGACTQD 106
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 384 NLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNML 443
N+ + L GN L+ L KL+LL+ N L ++ DL L+ L LDL N +
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYV 92
Query: 444 SGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKV 503
+ ++ L+ +N ++ S + K +Y L++N T L G
Sbjct: 93 QELLVG-----PSIETLHAANNNISRVSCSRGQGKKNIY--LANNKITMLRDLDEGCRSR 145
Query: 504 LVQIDLSMN-----NFSELFQATNEFSANNL 529
+ +DL +N NF+EL +++ NL
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 530 IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRI-RHRN 579
+G G G V K + T+VAVK+ E S I E +MMK I +H+N
Sbjct: 29 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 88
Query: 580 LIKIISSCSND 590
+I ++ +C+ D
Sbjct: 89 IINLLGACTQD 99
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 530 IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRI-RHRN 579
+G G G V K + T+VAVK+ E S I E +MMK I +H+N
Sbjct: 28 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 87
Query: 580 LIKIISSCSND 590
+I ++ +C+ D
Sbjct: 88 IINLLGACTQD 98
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 530 IGRGGIGSVY--------KARIQDGTEVAVKVFNLQYKEAFKSFDI-ECDMMKRI-RHRN 579
+G G G V K + T+VAVK+ E S I E +MMK I +H+N
Sbjct: 21 LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 80
Query: 580 LIKIISSCSND 590
+I ++ +C+ D
Sbjct: 81 IINLLGACTQD 91
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 521 TNEFSANNLIGRGGIGSVYK-ARIQDGTEVAVKVFNLQYKEA--FKSFDIECDMMKRIRH 577
++ + +G+G V + G E A K+ N + A F+ + E + ++++H
Sbjct: 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64
Query: 578 RNLIKIISSCSNDDFKAL 595
N++++ S + F L
Sbjct: 65 PNIVRLHDSIQEESFHYL 82
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 486 SSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELFQATNEFS----ANNLIGRG 533
S+ SFTG L G ++ +V I+ +NF + T+E S AN + G+G
Sbjct: 349 STKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQG 400
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 486 SSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELFQATNEFS----ANNLIGRG 533
S+ SFTG L G ++ +V I+ +NF + T+E S AN + G+G
Sbjct: 349 STKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEANVVYGQG 400
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ + T+VAVK + ++F E ++MK ++H L+++ + +
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQHDKLVRLYAVVTK 78
Query: 590 DD 591
++
Sbjct: 79 EE 80
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 520 ATNEFSANNLIGRGGIGSVYKARIQDGTEV-AVKV-FNLQYKEAFKSFDI--ECDMMKRI 575
A +F +G+G G+VY AR ++ + A+KV F Q ++A + E ++ +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 576 RHRNLIKI 583
RH N++++
Sbjct: 66 RHPNILRL 73
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 520 ATNEFSANNLIGRGGIGSVYKARIQDGTEV-AVKV-FNLQYKEAFKSFDI--ECDMMKRI 575
A +F +G+G G+VY AR + + A+KV F Q ++A + E ++ +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 576 RHRNLIKI 583
RH N++++
Sbjct: 92 RHPNILRL 99
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589
+G G G V+ T+VA+K +SF E +MK+++H L+++ + S
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSP-ESFLEEAQIMKKLKHDKLVQLYAVVSE 75
Query: 590 D 590
+
Sbjct: 76 E 76
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+ L + E S I E ++K + H N+
Sbjct: 5 FQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNI 64
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 65 VKLLDVIHTEN 75
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDI-ECDMMKRIRHRNL 580
F IG G G VYKAR + G VA+ L + E S I E ++K + H N+
Sbjct: 4 FQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNI 63
Query: 581 IKIISSCSNDD 591
+K++ ++
Sbjct: 64 VKLLDVIHTEN 74
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 520 ATNEFSANNLIGRGGIGSVYKARIQDGTEV-AVKV-FNLQYKEAFKSFDI--ECDMMKRI 575
A +F +G+G G+VY AR + + A+KV F Q ++A + E ++ +
Sbjct: 32 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 91
Query: 576 RHRNLIKI 583
RH N++++
Sbjct: 92 RHPNILRL 99
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 521 TNEFSANNLIGRGGIGSVYK-ARIQDGTEVAVKVFNLQYKEA--FKSFDIECDMMKRIRH 577
++ + +G+G V + G E A K+ N + A F+ + E + ++++H
Sbjct: 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64
Query: 578 RNLIKIISSCSNDDFKAL 595
N++++ S + F L
Sbjct: 65 PNIVRLHDSIQEESFHYL 82
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 520 ATNEFSANNLIGRGGIGSVYKARIQDGTEV-AVKV-FNLQYKEAFKSFDI--ECDMMKRI 575
A +F +G+G G+VY AR + + A+KV F Q ++A + E ++ +
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 576 RHRNLIKI 583
RH N++++
Sbjct: 69 RHPNILRL 76
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 520 ATNEFSANNLIGRGGIGSVYKARIQDGTEV-AVKV-FNLQYKEAFKSFDI--ECDMMKRI 575
A +F +G+G G+VY AR + + A+KV F Q ++A + E ++ +
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 576 RHRNLIKI 583
RH N++++
Sbjct: 66 RHPNILRL 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,008,550
Number of Sequences: 62578
Number of extensions: 627734
Number of successful extensions: 2448
Number of sequences better than 100.0: 403
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 325
Number of HSP's that attempted gapping in prelim test: 1717
Number of HSP's gapped (non-prelim): 739
length of query: 618
length of database: 14,973,337
effective HSP length: 105
effective length of query: 513
effective length of database: 8,402,647
effective search space: 4310557911
effective search space used: 4310557911
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)