Query 038393
Match_columns 618
No_of_seqs 758 out of 4710
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 18:14:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-63 7.8E-68 556.5 37.1 501 3-515 3-551 (768)
2 3rgz_A Protein brassinosteroid 100.0 2E-55 6.9E-60 492.2 34.5 460 55-521 178-723 (768)
3 4eco_A Uncharacterized protein 100.0 1.6E-55 5.5E-60 481.8 28.3 470 9-494 27-603 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 2.5E-55 8.5E-60 487.4 28.0 489 8-517 265-866 (876)
5 3t6q_A CD180 antigen; protein- 100.0 7.4E-52 2.5E-56 453.3 36.1 444 55-517 33-538 (606)
6 3t6q_A CD180 antigen; protein- 100.0 2.8E-49 9.4E-54 432.9 34.9 440 59-518 16-516 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 4.6E-49 1.6E-53 436.9 36.5 459 55-516 25-598 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.8E-49 9.6E-54 432.8 33.1 439 54-519 31-538 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1E-48 3.4E-53 442.5 29.8 459 43-515 14-560 (844)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-47 6.2E-52 424.2 38.3 459 55-516 49-623 (680)
11 2z63_A TOLL-like receptor 4, v 100.0 5.2E-47 1.8E-51 412.1 32.9 436 54-515 27-531 (570)
12 3vq2_A TLR4, TOLL-like recepto 100.0 4.8E-47 1.7E-51 415.1 31.2 430 59-518 15-513 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 7.8E-48 2.7E-52 416.4 24.5 448 42-515 3-510 (549)
14 3j0a_A TOLL-like receptor 5; m 100.0 9.3E-46 3.2E-50 418.3 25.3 447 58-518 7-542 (844)
15 2z63_A TOLL-like receptor 4, v 100.0 1.2E-44 4E-49 393.6 31.3 430 60-518 12-510 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-45 5.8E-50 395.1 23.7 432 55-515 21-481 (520)
17 4eco_A Uncharacterized protein 100.0 4.5E-45 1.5E-49 399.2 24.8 413 79-518 81-603 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 6.6E-44 2.2E-48 385.7 29.6 429 60-517 10-488 (549)
19 4ecn_A Leucine-rich repeat pro 100.0 8.9E-44 3E-48 394.9 27.0 412 79-518 323-843 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 7.5E-44 2.6E-48 382.3 23.2 409 54-492 44-482 (520)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-42 6.4E-47 374.6 24.6 429 57-515 33-510 (562)
22 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-42 5.5E-47 345.5 19.7 292 8-320 2-302 (313)
23 4g8a_A TOLL-like receptor 4; l 100.0 3E-40 1E-44 363.7 35.3 439 55-515 52-580 (635)
24 3v47_A TOLL-like receptor 5B a 100.0 1.6E-40 5.5E-45 350.4 29.4 368 42-448 7-412 (455)
25 3v47_A TOLL-like receptor 5B a 100.0 2.4E-40 8.2E-45 349.1 26.3 387 59-495 14-412 (455)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.8E-41 3E-45 361.5 23.2 410 55-493 52-512 (562)
27 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-39 6.7E-44 357.2 32.0 436 61-519 37-559 (635)
28 1jl5_A Outer protein YOPM; leu 100.0 6E-39 2.1E-43 335.5 26.9 385 55-517 11-411 (454)
29 1jl5_A Outer protein YOPM; leu 100.0 2.4E-38 8.3E-43 330.9 24.3 378 55-516 34-430 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2E-37 6.8E-42 324.3 27.9 344 56-498 43-394 (457)
31 1o6v_A Internalin A; bacterial 100.0 4.5E-37 1.5E-41 324.3 30.4 346 55-471 46-391 (466)
32 1o6v_A Internalin A; bacterial 100.0 1E-36 3.5E-41 321.6 32.6 324 54-446 67-390 (466)
33 2id5_A Lingo-1, leucine rich r 100.0 4.5E-37 1.5E-41 325.8 29.7 341 60-491 16-356 (477)
34 3o6n_A APL1; leucine-rich repe 100.0 1.1E-35 3.7E-40 306.6 25.1 310 77-446 43-354 (390)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-35 5.6E-40 309.8 26.0 343 113-516 38-388 (457)
36 2id5_A Lingo-1, leucine rich r 100.0 4.1E-35 1.4E-39 310.8 28.3 291 45-351 13-313 (477)
37 3oja_B Anopheles plasmodium-re 100.0 2E-35 7E-40 321.1 25.5 288 113-445 71-359 (597)
38 4fcg_A Uncharacterized protein 100.0 5E-36 1.7E-40 300.3 15.5 274 4-297 19-313 (328)
39 4fmz_A Internalin; leucine ric 100.0 4.4E-34 1.5E-38 289.9 26.1 307 75-468 40-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 9.5E-34 3.3E-38 287.4 27.1 307 113-491 40-346 (347)
41 3o6n_A APL1; leucine-rich repe 100.0 1.3E-33 4.3E-38 291.1 27.9 309 115-491 43-352 (390)
42 3oja_B Anopheles plasmodium-re 100.0 4.8E-33 1.6E-37 302.4 27.7 310 116-470 50-360 (597)
43 2ft3_A Biglycan; proteoglycan, 100.0 4E-32 1.4E-36 273.4 23.5 295 57-418 35-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 9.5E-32 3.3E-36 270.5 25.7 251 57-354 33-283 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 3E-35 1E-39 310.7 -0.9 361 55-444 3-411 (461)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-34 5.1E-39 305.4 1.4 355 117-493 3-413 (461)
47 1xku_A Decorin; proteoglycan, 100.0 8.3E-31 2.8E-35 263.6 27.5 275 141-466 52-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 3.8E-31 1.3E-35 266.2 24.6 288 118-466 34-331 (332)
49 3oja_A Leucine-rich immune mol 100.0 2.3E-33 7.7E-38 296.2 2.5 312 262-592 35-353 (487)
50 1ogq_A PGIP-2, polygalacturona 100.0 6.1E-31 2.1E-35 261.9 18.8 248 212-466 50-302 (313)
51 2z80_A TOLL-like receptor 2, v 100.0 1.4E-30 4.8E-35 264.4 21.5 286 36-351 23-318 (353)
52 3ogk_B Coronatine-insensitive 100.0 2.1E-32 7.2E-37 298.4 -3.4 442 42-515 41-526 (592)
53 3ogk_B Coronatine-insensitive 100.0 1.9E-31 6.5E-36 290.8 2.6 400 54-469 72-527 (592)
54 1ozn_A Reticulon 4 receptor; N 100.0 1.6E-28 5.4E-33 241.5 18.8 237 262-500 33-270 (285)
55 2z66_A Variable lymphocyte rec 100.0 2.8E-28 9.7E-33 242.4 20.0 251 42-324 6-263 (306)
56 4fcg_A Uncharacterized protein 100.0 2.2E-28 7.7E-33 244.7 18.1 272 26-322 26-314 (328)
57 2z66_A Variable lymphocyte rec 100.0 3.3E-28 1.1E-32 241.9 18.3 248 82-349 10-263 (306)
58 1wwl_A Monocyte differentiatio 100.0 1.6E-30 5.6E-35 258.8 0.7 204 139-349 93-311 (312)
59 3g06_A SSPH2 (leucine-rich rep 100.0 6.3E-28 2.1E-32 259.6 20.0 290 31-405 11-306 (622)
60 2z80_A TOLL-like receptor 2, v 100.0 8.8E-28 3E-32 243.8 19.4 273 215-492 34-315 (353)
61 3zyj_A Leucine-rich repeat-con 100.0 6.1E-27 2.1E-31 244.9 25.9 247 58-347 46-292 (440)
62 3zyi_A Leucine-rich repeat-con 100.0 5.9E-27 2E-31 245.9 25.3 244 59-347 58-303 (452)
63 3zyi_A Leucine-rich repeat-con 100.0 3.7E-27 1.3E-31 247.5 22.8 237 45-297 56-302 (452)
64 1wwl_A Monocyte differentiatio 100.0 2E-29 6.9E-34 251.0 4.6 265 36-323 24-310 (312)
65 1ozn_A Reticulon 4 receptor; N 100.0 4.6E-27 1.6E-31 231.0 20.9 224 82-348 14-239 (285)
66 3zyj_A Leucine-rich repeat-con 99.9 9.4E-27 3.2E-31 243.5 23.7 233 212-473 64-297 (440)
67 3g06_A SSPH2 (leucine-rich rep 99.9 9.9E-26 3.4E-30 242.5 28.3 269 79-455 40-308 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-28 9.5E-33 243.3 7.8 240 56-347 11-250 (317)
69 2p1m_B Transport inhibitor res 99.9 1.2E-30 4.2E-35 284.6 -10.2 438 42-491 34-519 (594)
70 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-28 1.1E-32 242.9 7.4 238 260-512 33-272 (317)
71 2o6q_A Variable lymphocyte rec 99.9 7.8E-26 2.7E-30 220.1 20.8 215 40-273 2-217 (270)
72 3oja_A Leucine-rich immune mol 99.9 5.7E-26 2E-30 239.6 14.2 219 115-347 32-250 (487)
73 2p1m_B Transport inhibitor res 99.9 1.2E-28 4E-33 268.9 -8.1 417 54-489 65-542 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 2.1E-24 7.1E-29 210.9 18.0 206 79-322 28-237 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 1E-23 3.4E-28 206.1 21.3 209 117-351 28-241 (276)
76 2o6q_A Variable lymphocyte rec 99.9 6E-23 2.1E-27 199.7 22.4 203 80-323 17-219 (270)
77 3rfs_A Internalin B, repeat mo 99.9 7E-24 2.4E-28 206.5 14.9 209 75-309 37-246 (272)
78 1p9a_G Platelet glycoprotein I 99.9 6.7E-23 2.3E-27 201.0 20.8 154 142-298 32-185 (290)
79 1p9a_G Platelet glycoprotein I 99.9 6.2E-23 2.1E-27 201.3 20.2 205 136-348 5-209 (290)
80 3m19_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 198.8 18.0 191 41-251 3-194 (251)
81 3rfs_A Internalin B, repeat mo 99.9 3.7E-23 1.3E-27 201.3 17.3 206 55-286 41-247 (272)
82 2xwt_C Thyrotropin receptor; s 99.9 6.6E-23 2.3E-27 195.6 18.0 195 80-295 32-236 (239)
83 2xwt_C Thyrotropin receptor; s 99.9 1E-22 3.6E-27 194.2 18.0 196 117-318 31-235 (239)
84 2ast_B S-phase kinase-associat 99.9 6.4E-25 2.2E-29 221.3 0.0 236 41-319 35-282 (336)
85 3goz_A Leucine-rich repeat-con 99.9 2E-24 6.9E-29 219.6 2.9 268 60-355 3-305 (362)
86 3goz_A Leucine-rich repeat-con 99.9 2.1E-24 7E-29 219.5 2.8 254 108-398 13-299 (362)
87 4glp_A Monocyte differentiatio 99.9 1.2E-22 4.2E-27 201.8 14.9 201 141-348 91-308 (310)
88 4glp_A Monocyte differentiatio 99.9 5.3E-23 1.8E-27 204.4 10.1 229 78-323 63-308 (310)
89 1h6u_A Internalin H; cell adhe 99.9 6E-22 2.1E-26 196.3 16.2 195 75-299 37-231 (308)
90 2ca6_A RAN GTPase-activating p 99.9 3.2E-23 1.1E-27 212.9 6.7 235 260-494 31-319 (386)
91 2ca6_A RAN GTPase-activating p 99.9 1.7E-23 5.8E-28 215.0 2.9 94 378-471 211-319 (386)
92 2ast_B S-phase kinase-associat 99.9 1.6E-22 5.3E-27 203.8 7.9 118 379-499 190-314 (336)
93 1h6u_A Internalin H; cell adhe 99.9 1.7E-21 5.8E-26 193.0 14.5 194 115-349 39-232 (308)
94 3m19_A Variable lymphocyte rec 99.9 8.6E-21 2.9E-25 182.3 18.6 153 80-249 15-168 (251)
95 4ay9_X Follicle-stimulating ho 99.9 6.5E-21 2.2E-25 192.7 18.2 241 43-319 9-256 (350)
96 4ay9_X Follicle-stimulating ho 99.9 4.5E-21 1.5E-25 193.8 17.0 238 82-344 12-256 (350)
97 3cvr_A Invasion plasmid antige 99.9 1.6E-21 5.6E-26 207.0 14.3 203 36-282 36-251 (571)
98 2o6s_A Variable lymphocyte rec 99.9 3.3E-21 1.1E-25 179.6 13.1 180 42-257 6-186 (208)
99 2o6s_A Variable lymphocyte rec 99.8 6.7E-20 2.3E-24 170.7 15.5 161 116-284 27-188 (208)
100 3e6j_A Variable lymphocyte rec 99.8 2.9E-19 9.8E-24 168.8 14.7 162 36-227 12-174 (229)
101 3cvr_A Invasion plasmid antige 99.8 6.7E-19 2.3E-23 187.0 18.6 190 118-358 60-254 (571)
102 1h6t_A Internalin B; cell adhe 99.8 1.8E-19 6.2E-24 176.8 11.3 172 75-298 42-213 (291)
103 1m9s_A Internalin B; cell inva 99.8 6.7E-19 2.3E-23 189.2 11.7 173 75-275 39-211 (605)
104 1h6t_A Internalin B; cell adhe 99.8 1.4E-18 5E-23 170.3 12.9 174 139-326 44-217 (291)
105 4b8c_D Glucose-repressible alc 99.8 3.7E-20 1.3E-24 204.2 1.6 230 9-279 129-359 (727)
106 2v9t_B SLIT homolog 2 protein 99.8 6E-18 2.1E-22 158.6 16.4 147 60-223 16-163 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 7.1E-18 2.4E-22 158.0 16.6 155 59-252 15-169 (220)
108 2xot_A Amphoterin-induced prot 99.8 5.2E-18 1.8E-22 172.0 16.2 177 59-273 22-201 (361)
109 1m9s_A Internalin B; cell inva 99.8 1E-18 3.5E-23 187.8 11.0 173 113-299 39-211 (605)
110 2xot_A Amphoterin-induced prot 99.8 2E-18 6.9E-23 175.0 12.5 148 42-203 17-177 (361)
111 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 157.8 16.6 155 81-252 21-175 (229)
112 2v9t_B SLIT homolog 2 protein 99.8 2.2E-18 7.6E-23 161.5 11.5 139 334-473 32-170 (220)
113 4ezg_A Putative uncharacterize 99.8 2.5E-18 8.4E-23 158.4 10.7 110 113-225 62-172 (197)
114 4ezg_A Putative uncharacterize 99.7 4.3E-18 1.5E-22 156.8 11.4 150 55-225 44-194 (197)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 4.6E-18 1.6E-22 159.3 11.0 157 288-472 14-170 (220)
116 1dce_A Protein (RAB geranylger 99.7 7E-21 2.4E-25 203.4 -11.6 205 114-341 346-567 (567)
117 1xeu_A Internalin C; cellular 99.7 6.7E-18 2.3E-22 162.9 10.2 170 116-300 18-187 (263)
118 3sb4_A Hypothetical leucine ri 99.7 7.3E-18 2.5E-22 168.7 9.4 217 260-507 100-326 (329)
119 1dce_A Protein (RAB geranylger 99.7 4E-20 1.4E-24 197.5 -8.0 205 138-365 346-566 (567)
120 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.3E-22 160.3 10.6 164 57-248 21-184 (263)
121 3sb4_A Hypothetical leucine ri 99.7 1E-17 3.6E-22 167.6 7.8 219 235-484 100-327 (329)
122 1w8a_A SLIT protein; signaling 99.7 5.8E-17 2E-21 148.4 8.2 131 58-205 11-142 (192)
123 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 7.9E-21 141.2 9.4 84 117-202 24-108 (168)
124 4b8c_D Glucose-repressible alc 99.7 4.6E-17 1.6E-21 179.5 5.8 189 218-419 207-403 (727)
125 2ell_A Acidic leucine-rich nuc 99.6 3.9E-16 1.4E-20 139.7 10.6 130 56-201 25-159 (168)
126 1w8a_A SLIT protein; signaling 99.6 4.1E-16 1.4E-20 142.7 9.6 160 312-499 11-170 (192)
127 2wfh_A SLIT homolog 2 protein 99.6 2.2E-15 7.4E-20 137.8 13.6 126 59-202 14-139 (193)
128 2je0_A Acidic leucine-rich nuc 99.6 2.9E-16 9.9E-21 137.5 6.4 127 55-197 17-148 (149)
129 2o6r_A Variable lymphocyte rec 99.6 3.9E-15 1.3E-19 134.4 12.8 133 43-204 7-139 (177)
130 4fdw_A Leucine rich hypothetic 99.6 5.3E-14 1.8E-18 143.6 22.4 264 117-419 113-382 (401)
131 4fdw_A Leucine rich hypothetic 99.6 3.4E-14 1.1E-18 145.1 20.8 272 212-523 113-391 (401)
132 2je0_A Acidic leucine-rich nuc 99.6 6.3E-16 2.2E-20 135.3 5.8 82 118-201 18-100 (149)
133 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4.2E-19 132.8 13.8 124 82-223 13-137 (193)
134 1a9n_A U2A', U2A'; complex (nu 99.6 4.4E-15 1.5E-19 133.8 8.4 142 379-525 15-163 (176)
135 2o6r_A Variable lymphocyte rec 99.6 3.1E-14 1E-18 128.5 13.4 114 117-253 28-141 (177)
136 4fs7_A Uncharacterized protein 99.5 3.5E-13 1.2E-17 138.2 22.0 80 380-462 294-373 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.8E-19 131.2 7.3 58 118-177 43-100 (176)
138 4fs7_A Uncharacterized protein 99.5 1.3E-12 4.5E-17 133.9 21.2 335 67-460 59-393 (394)
139 4asz_A BDNF/NT-3 growth factor 99.5 2.5E-14 8.5E-19 139.5 7.4 84 523-606 14-104 (299)
140 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.7E-21 146.8 -8.2 116 75-203 14-129 (198)
141 4aoj_A High affinity nerve gro 99.5 3.1E-14 1.1E-18 140.8 7.4 84 523-606 42-132 (329)
142 3g39_A Variable lymphocyte rec 99.4 4.6E-13 1.6E-17 119.6 11.6 103 59-178 13-115 (170)
143 1ds9_A Outer arm dynein; leuci 99.4 2.3E-15 8E-20 138.5 -3.8 134 377-517 42-187 (198)
144 4gt4_A Tyrosine-protein kinase 99.4 1E-13 3.5E-18 135.8 6.9 79 528-606 32-118 (308)
145 2r9u_A Variable lymphocyte rec 99.4 8.5E-13 2.9E-17 118.2 11.5 104 58-178 15-118 (174)
146 3g39_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 115.5 11.7 108 81-205 11-118 (170)
147 2r9u_A Variable lymphocyte rec 99.4 2.2E-12 7.5E-17 115.5 11.1 107 82-205 15-121 (174)
148 4fih_A Serine/threonine-protei 99.3 8.2E-13 2.8E-17 130.5 7.3 84 523-606 75-160 (346)
149 4gt6_A Cell surface protein; l 99.3 4.6E-10 1.6E-14 114.9 25.9 320 70-443 54-390 (394)
150 4fie_A Serine/threonine-protei 99.3 1.7E-12 5.8E-17 131.6 7.5 84 523-606 152-237 (423)
151 4b9d_A Serine/threonine-protei 99.3 2E-12 6.9E-17 127.9 7.5 85 522-606 24-112 (350)
152 4gt6_A Cell surface protein; l 99.3 3.6E-10 1.2E-14 115.7 24.0 85 111-197 57-145 (394)
153 4aw0_A HPDK1, 3-phosphoinositi 99.3 2.1E-12 7.2E-17 125.6 6.4 85 522-606 32-121 (311)
154 3un9_A NLR family member X1; l 99.3 1.7E-13 5.8E-18 138.5 -1.4 39 260-298 71-114 (372)
155 3omv_A RAF proto-oncogene seri 99.3 2.5E-12 8.5E-17 125.4 6.7 80 524-606 38-120 (307)
156 3hyh_A Carbon catabolite-derep 99.3 2.8E-12 9.7E-17 122.9 6.6 85 522-606 13-101 (275)
157 3fpq_A Serine/threonine-protei 99.3 3.6E-12 1.2E-16 123.3 6.1 80 527-606 31-118 (290)
158 4g3f_A NF-kappa-beta-inducing 99.3 2.2E-12 7.7E-17 127.0 4.6 80 522-606 58-139 (336)
159 3hmm_A TGF-beta receptor type- 99.2 5.8E-12 2E-16 123.6 7.0 81 524-606 5-90 (303)
160 4g31_A Eukaryotic translation 99.2 5.9E-12 2E-16 122.9 6.6 84 523-606 6-104 (299)
161 3un9_A NLR family member X1; l 99.2 1.9E-12 6.4E-17 130.8 2.5 87 383-469 155-253 (372)
162 2ifg_A High affinity nerve gro 99.2 3.7E-11 1.3E-15 120.9 11.5 99 63-178 16-116 (347)
163 3ubd_A Ribosomal protein S6 ki 99.2 4.7E-12 1.6E-16 123.1 3.7 85 522-606 24-115 (304)
164 2ifg_A High affinity nerve gro 99.2 5.4E-11 1.8E-15 119.7 10.5 93 108-202 23-116 (347)
165 2qkw_B Protein kinase; three-h 99.1 5.5E-11 1.9E-15 118.2 8.1 93 514-606 31-124 (321)
166 4ase_A Vascular endothelial gr 99.1 5.1E-11 1.7E-15 118.8 6.1 84 523-606 65-158 (353)
167 4b99_A Mitogen-activated prote 99.1 7.3E-11 2.5E-15 119.8 6.4 84 523-606 55-147 (398)
168 3uto_A Twitchin; kinase, muscl 99.0 2.7E-10 9.4E-15 121.6 7.5 85 522-606 157-243 (573)
169 4h09_A Hypothetical leucine ri 99.0 7.5E-08 2.6E-12 97.9 24.8 306 113-470 42-347 (379)
170 2c30_A Serine/threonine-protei 99.0 4.1E-10 1.4E-14 111.8 7.6 83 524-606 47-131 (321)
171 3uim_A Brassinosteroid insensi 99.0 3.4E-10 1.2E-14 112.7 6.8 94 513-606 21-116 (326)
172 4h09_A Hypothetical leucine ri 99.0 1.3E-07 4.4E-12 96.1 25.5 317 73-455 40-356 (379)
173 2ra8_A Uncharacterized protein 99.0 1.1E-09 3.8E-14 109.5 9.8 57 258-317 169-227 (362)
174 2nru_A Interleukin-1 receptor- 98.9 1.1E-09 3.9E-14 107.9 8.1 95 511-606 14-119 (307)
175 3s95_A LIMK-1, LIM domain kina 98.9 1.1E-09 3.8E-14 108.1 7.9 85 522-606 10-96 (310)
176 3fxz_A Serine/threonine-protei 98.9 1.3E-09 4.5E-14 106.8 8.3 85 522-606 20-106 (297)
177 4aw2_A Serine/threonine-protei 98.9 1.3E-09 4.3E-14 112.6 7.6 93 514-606 66-163 (437)
178 3v8s_A RHO-associated protein 98.9 1.1E-09 3.9E-14 112.0 7.0 94 513-606 60-158 (410)
179 2x4f_A Myosin light chain kina 98.9 1.7E-09 5.6E-14 109.7 7.8 82 525-606 92-175 (373)
180 2qol_A Ephrin receptor; recept 98.9 1.1E-09 3.7E-14 111.1 6.3 85 522-606 45-135 (373)
181 3v5w_A G-protein coupled recep 98.9 1.4E-09 4.9E-14 115.7 7.5 86 521-606 188-281 (689)
182 3fe3_A MAP/microtubule affinit 98.9 1.7E-09 5.9E-14 107.5 6.8 87 520-606 13-103 (328)
183 2ra8_A Uncharacterized protein 98.9 3.5E-10 1.2E-14 113.1 1.6 35 55-89 107-149 (362)
184 4hcu_A Tyrosine-protein kinase 98.9 2.7E-09 9.1E-14 103.0 7.8 83 523-606 11-94 (269)
185 3zgw_A Maternal embryonic leuc 98.9 2E-09 6.9E-14 107.7 6.8 86 521-606 9-97 (347)
186 4f9c_A Cell division cycle 7-r 98.9 2.5E-09 8.6E-14 107.2 7.2 86 519-606 18-109 (361)
187 3niz_A Rhodanese family protei 98.9 2.1E-09 7.3E-14 106.1 6.6 85 522-606 21-107 (311)
188 2pmi_A Negative RE, cyclin-dep 98.9 3.3E-09 1.1E-13 105.0 8.0 85 522-606 5-91 (317)
189 3kul_A Ephrin type-A receptor 98.9 2.4E-09 8.3E-14 106.4 6.9 84 523-606 50-139 (325)
190 2vd5_A DMPK protein; serine/th 98.9 3.2E-09 1.1E-13 108.6 8.0 93 514-606 53-150 (412)
191 2yab_A Death-associated protei 98.8 3.7E-09 1.3E-13 106.4 8.1 85 522-606 12-104 (361)
192 3hko_A Calcium/calmodulin-depe 98.8 2.8E-09 9.5E-14 107.0 7.2 90 517-606 21-117 (345)
193 3cbl_A C-FES, proto-oncogene t 98.8 2.1E-09 7.1E-14 109.3 6.1 84 523-606 115-201 (377)
194 3tki_A Serine/threonine-protei 98.8 4.7E-09 1.6E-13 104.2 8.0 85 522-606 7-94 (323)
195 1kob_A Twitchin; kinase, intra 98.8 4.5E-09 1.5E-13 106.9 7.8 85 522-606 51-137 (387)
196 1opk_A P150, C-ABL, proto-onco 98.8 3.2E-09 1.1E-13 111.8 7.0 84 522-606 220-305 (495)
197 1o6l_A RAC-beta serine/threoni 98.8 4.6E-09 1.6E-13 104.7 7.7 85 522-606 5-94 (337)
198 4fvq_A Tyrosine-protein kinase 98.8 4.5E-09 1.5E-13 102.6 7.5 84 523-606 9-101 (289)
199 3qd2_B Eukaryotic translation 98.8 4.8E-09 1.7E-13 104.5 7.8 70 522-591 6-77 (332)
200 3f3z_A Calcium/calmodulin-depe 98.8 5.1E-09 1.7E-13 101.5 7.8 85 522-606 9-95 (277)
201 1ob3_A PFPK5, cell division co 98.8 3.9E-09 1.3E-13 103.0 6.9 84 523-606 3-88 (288)
202 3uqc_A Probable conserved tran 98.8 3.5E-09 1.2E-13 103.1 6.5 84 523-606 32-120 (286)
203 1u5q_A Serine/threonine protei 98.8 3.3E-09 1.1E-13 106.4 6.4 85 522-606 54-142 (348)
204 3sxs_A Cytoplasmic tyrosine-pr 98.8 4.9E-09 1.7E-13 101.1 7.3 84 522-606 8-92 (268)
205 3gen_A Tyrosine-protein kinase 98.8 5.5E-09 1.9E-13 101.6 7.7 84 522-606 24-108 (283)
206 3c0i_A Peripheral plasma membr 98.8 5.2E-09 1.8E-13 105.2 7.7 84 523-606 25-115 (351)
207 2y0a_A Death-associated protei 98.8 6.6E-09 2.3E-13 103.3 8.3 84 523-606 12-103 (326)
208 1qcf_A Haematopoetic cell kina 98.8 5.1E-09 1.7E-13 109.2 7.8 83 522-606 188-271 (454)
209 3p86_A Serine/threonine-protei 98.8 4.7E-09 1.6E-13 103.5 7.1 84 522-606 37-123 (309)
210 2w4o_A Calcium/calmodulin-depe 98.8 3.4E-09 1.1E-13 106.5 6.0 84 521-606 52-137 (349)
211 3uc3_A Serine/threonine-protei 98.8 5.1E-09 1.8E-13 105.6 7.3 84 522-606 20-105 (361)
212 3o0g_A Cell division protein k 98.8 6.5E-09 2.2E-13 101.6 7.8 83 523-605 3-88 (292)
213 2psq_A Fibroblast growth facto 98.8 4.6E-09 1.6E-13 106.3 6.9 85 522-606 81-176 (370)
214 1fot_A TPK1 delta, CAMP-depend 98.8 6.6E-09 2.3E-13 102.7 7.7 85 522-606 6-95 (318)
215 2bdw_A Hypothetical protein K1 98.8 5.1E-09 1.8E-13 105.6 7.0 85 522-606 29-117 (362)
216 4eqm_A Protein kinase; transfe 98.8 4.8E-09 1.6E-13 102.6 6.4 84 523-606 12-100 (294)
217 2clq_A Mitogen-activated prote 98.8 7E-09 2.4E-13 101.5 7.3 83 524-606 24-108 (295)
218 2zv2_A Calcium/calmodulin-depe 98.8 1.1E-08 3.7E-13 100.3 8.7 85 522-606 13-127 (298)
219 1luf_A Muscle-specific tyrosin 98.8 6E-09 2E-13 104.5 6.9 89 518-606 43-139 (343)
220 2pml_X PFPK7, Ser/Thr protein 98.8 8.2E-09 2.8E-13 103.7 7.9 84 522-606 31-132 (348)
221 3h4j_B AMPK kdaid, SNF1-like p 98.8 6.3E-09 2.2E-13 103.6 6.7 85 522-606 9-97 (336)
222 1k9a_A Carboxyl-terminal SRC k 98.8 7.8E-09 2.7E-13 107.6 7.7 82 522-606 193-276 (450)
223 3kmu_A ILK, integrin-linked ki 98.8 4.8E-09 1.6E-13 101.2 5.6 83 523-606 11-98 (271)
224 3a62_A Ribosomal protein S6 ki 98.8 4.6E-09 1.6E-13 104.5 5.6 85 522-606 17-110 (327)
225 3ugc_A Tyrosine-protein kinase 98.8 4.2E-09 1.4E-13 103.1 5.2 84 523-606 11-102 (295)
226 3gni_B Strad alpha; kinase fol 98.8 7.5E-09 2.6E-13 105.7 7.2 91 516-606 19-115 (389)
227 4fr4_A YANK1, serine/threonine 98.8 7.9E-09 2.7E-13 104.7 7.3 85 522-606 15-104 (384)
228 2j7t_A Serine/threonine-protei 98.8 7.9E-09 2.7E-13 101.5 7.1 85 522-606 19-105 (302)
229 1fmk_A C-SRC, P60-SRC, tyrosin 98.8 6.7E-09 2.3E-13 108.2 6.9 83 522-606 184-267 (452)
230 3t9t_A Tyrosine-protein kinase 98.8 8.7E-09 3E-13 99.2 7.2 83 523-606 9-92 (267)
231 1tki_A Titin; serine kinase, m 98.8 8.3E-09 2.8E-13 102.3 7.1 84 522-606 5-90 (321)
232 2ac3_A MAP kinase-interacting 98.8 1.1E-08 3.7E-13 101.2 8.0 79 528-606 19-100 (316)
233 2jam_A Calcium/calmodulin-depe 98.8 9.1E-09 3.1E-13 101.2 7.3 84 523-606 10-95 (304)
234 3is5_A Calcium-dependent prote 98.8 1.2E-08 4.2E-13 99.2 8.0 84 523-606 23-109 (285)
235 3gbz_A Kinase, CMGC CDK; ssgci 98.8 6.3E-09 2.2E-13 103.6 6.1 85 522-606 34-121 (329)
236 3pg1_A Mitogen-activated prote 98.8 6.1E-09 2.1E-13 105.3 6.0 93 514-606 14-122 (362)
237 3l9p_A Anaplastic lymphoma kin 98.8 6.7E-09 2.3E-13 105.1 6.3 84 523-606 72-163 (367)
238 3soc_A Activin receptor type-2 98.7 7.8E-09 2.7E-13 102.6 6.6 83 522-606 24-111 (322)
239 3soa_A Calcium/calmodulin-depe 98.7 7.6E-09 2.6E-13 107.1 6.6 85 522-606 11-99 (444)
240 4euu_A Serine/threonine-protei 98.7 1.3E-08 4.6E-13 100.8 8.1 84 523-606 10-98 (319)
241 3eqc_A Dual specificity mitoge 98.7 9.2E-09 3.2E-13 103.8 6.9 85 522-606 33-120 (360)
242 1rdq_E PKA C-alpha, CAMP-depen 98.7 1.3E-08 4.3E-13 102.1 7.8 85 522-606 41-130 (350)
243 3a8x_A Protein kinase C IOTA t 98.7 1.1E-08 3.8E-13 102.4 7.3 85 522-606 9-99 (345)
244 3kfa_A Tyrosine-protein kinase 98.7 9.4E-09 3.2E-13 100.2 6.4 86 520-606 11-98 (288)
245 3p1a_A MYT1 kinase, membrane-a 98.7 8.3E-09 2.8E-13 101.8 5.9 85 522-606 57-145 (311)
246 2y94_A 5'-AMP-activated protei 98.7 1.3E-08 4.6E-13 106.0 7.7 85 522-606 16-105 (476)
247 2eue_A Carbon catabolite derep 98.7 1.5E-08 5.2E-13 98.0 7.5 85 522-606 13-101 (275)
248 4dc2_A Protein kinase C IOTA t 98.7 1.3E-08 4.3E-13 103.6 7.2 85 522-606 52-142 (396)
249 2h8h_A Proto-oncogene tyrosine 98.7 8.8E-09 3E-13 109.6 6.3 82 523-606 268-350 (535)
250 1xjd_A Protein kinase C, theta 98.7 1.2E-08 4.2E-13 101.9 7.0 87 520-606 15-107 (345)
251 3kn6_A Ribosomal protein S6 ki 98.7 1.6E-08 5.6E-13 100.4 7.8 76 528-606 17-95 (325)
252 3txo_A PKC-L, NPKC-ETA, protei 98.7 1.2E-08 4.2E-13 102.3 6.9 85 522-606 23-113 (353)
253 3kk8_A Calcium/calmodulin depe 98.7 1.2E-08 4.1E-13 99.2 6.6 85 522-606 6-94 (284)
254 3fdn_A Serine/threonine-protei 98.7 1.4E-08 4.9E-13 98.4 7.2 87 520-606 7-98 (279)
255 2ivs_A Proto-oncogene tyrosine 98.7 1.2E-08 4.3E-13 100.7 6.7 85 522-606 23-115 (314)
256 2yex_A Serine/threonine-protei 98.7 2.4E-08 8.1E-13 96.6 8.4 85 522-606 7-94 (276)
257 2i6l_A Mitogen-activated prote 98.7 1.3E-08 4.6E-13 100.7 6.8 84 523-606 12-110 (320)
258 3dbq_A Dual specificity protei 98.7 8.9E-09 3E-13 103.2 5.4 85 522-606 9-97 (343)
259 2wqm_A Serine/threonine-protei 98.7 2E-08 6.8E-13 99.1 7.8 85 522-606 32-121 (310)
260 2buj_A Serine/threonine-protei 98.7 1.3E-08 4.3E-13 100.8 6.3 85 522-606 29-119 (317)
261 3cok_A Serine/threonine-protei 98.7 1.8E-08 6.2E-13 97.6 7.3 86 521-606 10-100 (278)
262 3mtl_A Cell division protein k 98.7 6.3E-09 2.2E-13 103.4 4.0 84 523-606 3-88 (324)
263 3bhy_A Death-associated protei 98.7 2.1E-08 7.3E-13 97.4 7.7 84 523-606 6-97 (283)
264 3dtc_A Mitogen-activated prote 98.7 1.1E-08 3.8E-13 98.7 5.6 84 522-606 7-95 (271)
265 3i6u_A CDS1, serine/threonine- 98.7 2.1E-08 7.3E-13 103.3 8.0 85 521-606 134-228 (419)
266 2a2a_A Death-associated protei 98.7 2.2E-08 7.6E-13 99.3 7.8 85 522-606 12-104 (321)
267 1ua2_A CAK, cell division prot 98.7 1.1E-08 3.9E-13 102.6 5.7 86 521-606 9-100 (346)
268 3rw6_A Nuclear RNA export fact 98.7 3.9E-10 1.3E-14 106.8 -4.7 66 114-181 167-236 (267)
269 1p4o_A Insulin-like growth fac 98.7 1.3E-08 4.6E-13 100.9 6.2 88 519-606 22-117 (322)
270 2rku_A Serine/threonine-protei 98.7 2.3E-08 7.8E-13 97.8 7.7 85 522-606 15-104 (294)
271 4ejn_A RAC-alpha serine/threon 98.7 8.8E-09 3E-13 107.2 5.0 85 522-606 148-237 (446)
272 3lxl_A Tyrosine-protein kinase 98.7 1.8E-08 6.2E-13 100.2 7.1 85 522-606 23-115 (327)
273 3vhe_A Vascular endothelial gr 98.7 8.3E-09 2.8E-13 104.1 4.6 88 519-606 19-116 (359)
274 1x8b_A WEE1HU, WEE1-like prote 98.7 1.8E-08 6.2E-13 98.1 6.8 86 521-606 10-100 (289)
275 4eut_A Serine/threonine-protei 98.7 1.9E-08 6.5E-13 102.9 7.1 84 523-606 10-98 (396)
276 2r3i_A Cell division protein k 98.7 1.9E-08 6.3E-13 98.7 6.8 85 522-606 3-90 (299)
277 3rp9_A Mitogen-activated prote 98.7 1.2E-08 4.2E-13 106.5 5.8 85 522-606 53-145 (458)
278 3qup_A Tyrosine-protein kinase 98.7 1.2E-08 4.1E-13 101.3 5.4 91 516-606 17-120 (323)
279 3lij_A Calcium/calmodulin depe 98.7 2.9E-08 9.8E-13 104.7 8.6 84 523-606 38-125 (494)
280 2h6d_A 5'-AMP-activated protei 98.7 2.9E-08 9.9E-13 96.0 8.0 85 522-606 11-100 (276)
281 2acx_A G protein-coupled recep 98.7 2.1E-08 7.1E-13 106.3 7.4 86 521-606 183-273 (576)
282 2pvf_A Fibroblast growth facto 98.7 1.8E-08 6E-13 100.6 6.5 85 522-606 35-130 (334)
283 1t46_A HOMO sapiens V-KIT hard 98.7 1.4E-08 4.7E-13 100.4 5.7 85 522-606 23-116 (313)
284 2izr_A Casein kinase I isoform 98.7 2.4E-08 8.3E-13 99.4 7.5 83 522-606 9-93 (330)
285 3q5i_A Protein kinase; CDPK, m 98.7 2.1E-08 7.1E-13 106.1 7.3 85 522-606 36-135 (504)
286 1qpc_A LCK kinase; alpha beta 98.7 2.2E-08 7.7E-13 97.0 6.9 83 522-606 13-96 (279)
287 2owb_A Serine/threonine-protei 98.7 2.7E-08 9.3E-13 99.2 7.7 85 522-606 41-130 (335)
288 4agu_A Cyclin-dependent kinase 98.7 1.7E-08 5.7E-13 99.6 5.9 84 523-606 4-91 (311)
289 2w1i_A JAK2; chromosomal rearr 98.7 2.4E-08 8.1E-13 99.3 7.0 84 523-606 42-133 (326)
290 1rjb_A FL cytokine receptor; k 98.7 2E-08 6.7E-13 100.7 6.4 86 521-606 44-138 (344)
291 2qr7_A Ribosomal protein S6 ki 98.7 1.8E-08 6.2E-13 100.7 6.1 81 522-606 22-105 (342)
292 3mwu_A Calmodulin-domain prote 98.7 2E-08 6.9E-13 105.7 6.8 84 523-606 23-110 (486)
293 4f0f_A Serine/threonine-protei 98.7 3.2E-08 1.1E-12 96.3 7.7 83 522-606 19-110 (287)
294 3eb0_A Putative uncharacterize 98.7 1.7E-08 5.9E-13 102.8 5.9 84 519-606 4-126 (383)
295 2eva_A TAK1 kinase - TAB1 chim 98.7 2E-08 6.9E-13 98.8 6.2 79 523-606 9-88 (307)
296 3tt0_A Basic fibroblast growth 98.7 2E-08 6.9E-13 102.2 6.3 85 522-606 69-164 (382)
297 4e5w_A Tyrosine-protein kinase 98.7 3.1E-08 1E-12 97.3 7.4 83 524-606 23-114 (302)
298 2vwi_A Serine/threonine-protei 98.7 1.4E-08 4.6E-13 99.8 4.8 85 522-606 15-102 (303)
299 2h34_A Serine/threonine-protei 98.7 3E-08 1E-12 97.7 7.3 85 522-606 34-123 (309)
300 3n9x_A Phosphotransferase; mal 98.6 1.7E-08 5.9E-13 104.4 5.8 85 522-606 26-118 (432)
301 3ork_A Serine/threonine protei 98.6 7E-09 2.4E-13 102.4 2.7 85 522-606 12-105 (311)
302 3dls_A PAS domain-containing s 98.6 2.3E-08 7.7E-13 99.8 6.4 86 521-606 23-119 (335)
303 3nyv_A Calmodulin-domain prote 98.6 2.9E-08 1E-12 104.5 7.5 84 523-606 27-115 (484)
304 1phk_A Phosphorylase kinase; g 98.6 3.2E-08 1.1E-12 96.9 7.3 85 522-606 17-113 (298)
305 3a7i_A MST3 kinase, serine/thr 98.6 3.2E-08 1.1E-12 97.2 7.2 84 523-606 23-109 (303)
306 2w5a_A Serine/threonine-protei 98.6 2.7E-08 9.1E-13 96.5 6.6 85 522-606 6-96 (279)
307 2zmd_A Dual specificity protei 98.6 2E-08 6.8E-13 102.4 5.9 84 523-606 57-144 (390)
308 2yfx_A Tyrosine-protein kinase 98.6 2.3E-08 7.9E-13 99.4 6.2 85 522-606 30-122 (327)
309 2i0e_A Protein kinase C-beta I 98.6 2.4E-08 8.3E-13 100.1 6.2 85 522-606 20-110 (353)
310 2vgo_A Serine/threonine-protei 98.6 3.3E-08 1.1E-12 96.1 7.0 85 522-606 14-103 (284)
311 3c4z_A Rhodopsin kinase; Ser/T 98.6 3.6E-08 1.2E-12 104.1 7.8 85 522-606 185-274 (543)
312 3brb_A Proto-oncogene tyrosine 98.6 2.4E-08 8.1E-13 98.7 5.9 94 513-606 25-130 (313)
313 3an0_A Dual specificity mitoge 98.6 2.8E-08 9.5E-13 99.4 6.4 86 521-606 50-138 (340)
314 2ozo_A Tyrosine-protein kinase 98.6 3.1E-08 1.1E-12 107.0 7.0 77 529-606 343-424 (613)
315 2r5t_A Serine/threonine-protei 98.6 3.1E-08 1E-12 100.1 6.5 85 522-606 38-128 (373)
316 2x7f_A TRAF2 and NCK-interacti 98.6 2.7E-08 9.2E-13 98.9 5.9 91 515-606 17-116 (326)
317 3llt_A Serine/threonine kinase 98.6 3.8E-08 1.3E-12 99.3 6.9 87 519-606 32-124 (360)
318 1mqb_A Ephrin type-A receptor 98.6 3.4E-08 1.1E-12 98.5 6.3 84 523-606 45-135 (333)
319 3com_A Serine/threonine-protei 98.6 4.7E-08 1.6E-12 96.5 7.3 83 522-606 29-113 (314)
320 3byv_A Rhoptry kinase; malaria 98.6 7.4E-09 2.5E-13 105.2 1.5 87 520-606 71-188 (377)
321 3ll6_A Cyclin G-associated kin 98.6 3.1E-08 1.1E-12 98.9 6.0 85 522-606 28-122 (337)
322 4aaa_A Cyclin-dependent kinase 98.6 5.5E-08 1.9E-12 96.9 7.8 84 522-605 25-112 (331)
323 1zy4_A Serine/threonine-protei 98.6 3.6E-08 1.2E-12 96.7 6.3 84 522-606 6-104 (303)
324 2rio_A Serine/threonine-protei 98.6 4.1E-08 1.4E-12 101.6 7.0 78 526-606 19-97 (434)
325 1fvr_A Tyrosine-protein kinase 98.6 5.3E-08 1.8E-12 96.8 7.4 84 523-606 26-115 (327)
326 2wtk_C Serine/threonine-protei 98.6 4.7E-08 1.6E-12 96.0 6.9 84 522-605 5-95 (305)
327 3p23_A Serine/threonine-protei 98.6 2.9E-08 1E-12 102.4 5.6 84 520-606 22-106 (432)
328 1t4h_A Serine/threonine-protei 98.6 5.6E-08 1.9E-12 94.8 7.3 83 524-606 28-118 (290)
329 3gxj_A TGF-beta receptor type- 98.6 4.5E-08 1.5E-12 96.1 6.6 81 522-606 3-90 (303)
330 2ycf_A Serine/threonine-protei 98.6 4.4E-08 1.5E-12 97.1 6.6 84 522-606 10-103 (322)
331 3ttj_A Mitogen-activated prote 98.6 3.4E-08 1.2E-12 103.0 6.0 85 521-605 61-154 (464)
332 3e7e_A HBUB1, BUB1A, mitotic c 98.6 2.8E-08 9.6E-13 100.5 5.2 85 519-606 62-156 (365)
333 2i1m_A Macrophage colony-stimu 98.6 4.1E-08 1.4E-12 97.9 6.4 86 521-606 45-139 (333)
334 3aln_A Dual specificity mitoge 98.6 5.2E-08 1.8E-12 96.8 7.1 85 522-606 22-109 (327)
335 2xrw_A Mitogen-activated prote 98.6 4.4E-08 1.5E-12 99.2 6.6 85 522-606 25-118 (371)
336 3fme_A Dual specificity mitoge 98.6 4.8E-08 1.7E-12 95.2 6.7 85 522-606 7-94 (290)
337 3lxp_A Non-receptor tyrosine-p 98.6 5.9E-08 2E-12 96.0 7.3 83 524-606 33-124 (318)
338 2wei_A Calmodulin-domain prote 98.6 7.6E-08 2.6E-12 93.7 8.0 85 522-606 22-110 (287)
339 4fl3_A Tyrosine-protein kinase 98.6 3.8E-08 1.3E-12 106.7 6.3 78 528-606 375-458 (635)
340 2y7j_A Phosphorylase B kinase 98.6 5.7E-08 2E-12 98.1 7.2 86 521-606 93-189 (365)
341 1u59_A Tyrosine-protein kinase 98.6 5.4E-08 1.8E-12 94.7 6.5 77 529-606 17-98 (287)
342 2a19_B Interferon-induced, dou 98.6 5.5E-08 1.9E-12 94.4 6.6 81 522-606 11-109 (284)
343 2b9h_A MAP kinase FUS3, mitoge 98.6 4.4E-08 1.5E-12 98.5 6.0 86 521-606 10-102 (353)
344 1cm8_A Phosphorylated MAP kina 98.6 3.3E-08 1.1E-12 99.9 5.1 85 522-606 25-118 (367)
345 3mi9_A Cell division protein k 98.6 6.7E-08 2.3E-12 97.1 7.3 85 522-606 17-112 (351)
346 1io0_A Tropomodulin; LRR prote 98.6 2.9E-09 9.8E-14 96.1 -2.6 120 72-201 29-163 (185)
347 3cek_A Dual specificity protei 98.6 3.3E-08 1.1E-12 97.6 4.7 87 520-606 26-116 (313)
348 3oz6_A Mitogen-activated prote 98.6 5.6E-08 1.9E-12 99.1 6.5 85 522-606 9-99 (388)
349 3c1x_A Hepatocyte growth facto 98.6 3.9E-08 1.3E-12 99.5 5.2 83 524-606 91-180 (373)
350 1vzo_A Ribosomal protein S6 ki 98.6 4.4E-08 1.5E-12 98.5 5.5 85 522-606 54-148 (355)
351 1mp8_A Focal adhesion kinase 1 98.6 5.9E-08 2E-12 94.1 6.2 84 522-606 15-104 (281)
352 1blx_A Cyclin-dependent kinase 98.6 5.6E-08 1.9E-12 96.5 6.1 89 518-606 7-107 (326)
353 3qyz_A Mitogen-activated prote 98.5 4.5E-08 1.5E-12 98.9 5.5 86 521-606 26-118 (364)
354 3e3p_A Protein kinase, putativ 98.5 7.7E-08 2.6E-12 97.0 7.2 88 517-605 18-113 (360)
355 1byg_A CSK, protein (C-termina 98.5 5.4E-08 1.8E-12 94.3 5.7 82 522-606 21-104 (278)
356 3g33_A Cell division protein k 98.5 9.3E-08 3.2E-12 94.1 7.4 86 521-606 8-107 (308)
357 3coi_A Mitogen-activated prote 98.5 6E-08 2E-12 97.6 6.1 85 522-606 24-117 (353)
358 2vuw_A Serine/threonine-protei 98.5 1.3E-08 4.4E-13 101.7 1.1 83 522-605 20-150 (336)
359 4exu_A Mitogen-activated prote 98.5 5.4E-08 1.8E-12 98.6 5.5 85 522-606 42-135 (371)
360 2pzi_A Probable serine/threoni 98.5 5.1E-08 1.7E-12 107.1 5.6 85 522-606 80-173 (681)
361 3rgf_A Cyclin-dependent kinase 98.5 7.3E-08 2.5E-12 98.9 6.1 77 528-606 27-108 (405)
362 3q4u_A Activin receptor type-1 98.5 1E-07 3.5E-12 93.4 7.0 81 522-606 8-95 (301)
363 2fst_X Mitogen-activated prote 98.5 7.6E-08 2.6E-12 97.2 6.0 86 521-606 28-122 (367)
364 3poz_A Epidermal growth factor 98.5 7.3E-08 2.5E-12 95.8 5.8 83 523-606 16-105 (327)
365 3cc6_A Protein tyrosine kinase 98.5 1.1E-07 3.8E-12 92.2 6.8 85 521-606 11-101 (281)
366 3pls_A Macrophage-stimulating 98.5 7.4E-08 2.5E-12 94.3 5.5 83 524-606 23-112 (298)
367 3nsz_A CK II alpha, casein kin 98.5 1.6E-07 5.3E-12 93.5 7.8 82 522-606 36-122 (330)
368 2xir_A Vascular endothelial gr 98.5 7.1E-08 2.4E-12 95.3 5.2 86 521-606 26-121 (316)
369 1xbb_A Tyrosine-protein kinase 98.5 8.9E-08 3E-12 93.4 5.6 83 523-606 17-106 (291)
370 3kex_A Receptor tyrosine-prote 98.5 1E-07 3.4E-12 94.7 6.0 83 523-606 14-103 (325)
371 3f66_A Hepatocyte growth facto 98.5 9.4E-08 3.2E-12 93.6 5.7 85 522-606 25-116 (298)
372 1j1b_A Glycogen synthase kinas 98.5 8.1E-08 2.8E-12 98.9 5.1 79 523-605 55-140 (420)
373 1io0_A Tropomodulin; LRR prote 98.5 8.8E-08 3E-12 86.3 4.6 18 331-348 33-51 (185)
374 1b6c_B TGF-B superfamily recep 98.5 1.6E-07 5.5E-12 93.9 7.0 81 522-606 42-129 (342)
375 2v62_A Serine/threonine-protei 98.5 1.1E-07 3.6E-12 95.4 5.4 85 522-606 37-140 (345)
376 3lm5_A Serine/threonine-protei 98.5 2.3E-07 7.8E-12 92.2 7.7 79 528-606 35-118 (327)
377 1csn_A Casein kinase-1; phosph 98.4 2.4E-07 8.1E-12 90.6 7.4 83 522-606 10-94 (298)
378 3pfq_A PKC-B, PKC-beta, protei 98.4 2.3E-07 7.8E-12 101.3 7.9 85 522-606 341-431 (674)
379 1u46_A ACK-1, activated CDC42 98.4 2E-07 6.9E-12 90.8 6.5 83 523-606 19-109 (291)
380 3mdy_A Bone morphogenetic prot 98.4 2.6E-07 9E-12 92.1 7.2 81 522-606 37-124 (337)
381 2dyl_A Dual specificity mitoge 98.4 2.6E-07 8.9E-12 91.3 7.0 83 522-604 25-110 (318)
382 2jii_A Serine/threonine-protei 98.4 9.3E-08 3.2E-12 96.1 3.6 80 522-606 42-146 (352)
383 3qa8_A MGC80376 protein; kinas 98.4 6.9E-08 2.3E-12 103.5 2.7 85 522-606 14-107 (676)
384 3op5_A Serine/threonine-protei 98.4 1.7E-07 5.9E-12 94.6 5.5 86 521-606 34-140 (364)
385 2j0j_A Focal adhesion kinase 1 98.4 2.8E-07 9.5E-12 100.3 7.1 84 522-606 390-479 (656)
386 3lb7_A RAF proto-oncogene seri 98.4 2E-07 6.8E-12 91.7 5.4 81 523-606 37-120 (307)
387 4e7w_A Glycogen synthase kinas 98.4 1.7E-07 5.9E-12 95.6 5.0 80 522-605 40-125 (394)
388 3og7_A AKAP9-BRAF fusion prote 98.4 2.6E-07 8.8E-12 90.0 5.2 81 523-606 25-108 (289)
389 2y4i_B KSR2, HKSR2, kinase sup 98.4 1.5E-07 5.1E-12 93.1 3.5 84 521-606 32-118 (319)
390 3lzb_A Epidermal growth factor 98.3 3.9E-07 1.3E-11 90.4 6.2 84 522-606 15-105 (327)
391 3m2w_A MAP kinase-activated pr 98.3 4.4E-07 1.5E-11 88.8 6.4 74 528-606 24-104 (299)
392 3kvw_A DYRK2, dual specificity 98.3 4.8E-07 1.6E-11 93.4 7.0 83 523-606 98-187 (429)
393 2iwi_A Serine/threonine-protei 98.3 1.7E-07 5.9E-12 92.4 3.2 85 522-606 31-128 (312)
394 1nxk_A MAP kinase-activated pr 98.3 4.1E-07 1.4E-11 92.9 5.8 74 528-606 68-148 (400)
395 1wak_A Serine/threonine-protei 98.3 4.1E-07 1.4E-11 93.0 5.8 84 522-606 37-133 (397)
396 3g2f_A Bone morphogenetic prot 98.3 5.6E-07 1.9E-11 89.7 6.1 81 522-606 13-101 (336)
397 1z57_A Dual specificity protei 98.3 5.2E-07 1.8E-11 89.9 5.2 84 522-606 14-105 (339)
398 3e4g_A ATP synthase subunit S, 98.2 3.7E-07 1.2E-11 80.0 2.9 82 118-199 62-149 (176)
399 3uzp_A CKI-delta, CKID, casein 98.2 1.1E-06 3.9E-11 85.7 6.5 84 521-606 8-93 (296)
400 3q60_A ROP5B; pseudokinase, tr 98.2 7.2E-07 2.5E-11 90.2 5.2 86 521-606 61-176 (371)
401 3a99_A Proto-oncogene serine/t 98.2 9.3E-07 3.2E-11 87.4 5.8 86 521-606 42-138 (320)
402 2vx3_A Dual specificity tyrosi 98.2 9.9E-07 3.4E-11 89.6 5.9 86 520-606 52-144 (382)
403 4hgt_A Casein kinase I isoform 98.2 1.4E-06 4.9E-11 84.9 6.7 84 521-606 8-93 (296)
404 3rw6_A Nuclear RNA export fact 98.2 8.9E-07 3.1E-11 83.7 4.7 62 405-468 168-233 (267)
405 3sv0_A Casein kinase I-like; t 98.2 3E-06 1E-10 88.4 8.1 83 522-606 7-91 (483)
406 1q8y_A SR protein kinase; tran 98.1 8.6E-07 2.9E-11 89.7 3.7 83 523-606 20-118 (373)
407 3fhr_A MAP kinase-activated pr 98.1 1.8E-06 6E-11 86.0 5.9 79 523-606 29-115 (336)
408 1zar_A RIO2 kinase; serine kin 98.1 1.5E-06 5E-11 84.0 5.0 86 517-606 85-189 (282)
409 3en9_A Glycoprotease, O-sialog 98.1 1.5E-06 5.2E-11 92.1 5.3 80 526-606 340-428 (540)
410 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.6E-11 76.4 3.2 83 384-466 62-150 (176)
411 2eu9_A Dual specificity protei 98.1 2.8E-06 9.5E-11 85.2 5.6 83 523-606 20-110 (355)
412 4azs_A Methyltransferase WBDD; 97.9 4E-06 1.4E-10 89.4 4.0 75 532-606 244-331 (569)
413 1zth_A RIO1 serine protein kin 97.5 8.6E-05 2.9E-09 70.5 5.6 73 524-600 49-150 (258)
414 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00022 7.6E-09 63.6 5.5 14 383-396 70-83 (197)
415 3dzo_A Rhoptry kinase domain; 97.2 0.00021 7.3E-09 73.0 4.2 60 518-577 74-137 (413)
416 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00039 1.3E-08 62.0 5.0 115 308-443 40-169 (197)
417 4gyi_A RIO2 kinase; protein ki 97.1 0.00017 5.7E-09 71.9 2.7 33 524-556 97-129 (397)
418 3d1u_A Putative fructosamine-3 96.7 0.0026 9E-08 61.1 6.9 72 527-602 20-94 (288)
419 3rfe_A Platelet glycoprotein I 96.7 0.002 6.8E-08 53.5 5.3 61 411-473 12-73 (130)
420 3tm0_A Aminoglycoside 3'-phosp 96.6 0.0056 1.9E-07 57.9 8.8 81 524-605 16-98 (263)
421 1nd4_A Aminoglycoside 3'-phosp 96.4 0.0068 2.3E-07 57.2 8.2 71 531-604 29-102 (264)
422 3rfe_A Platelet glycoprotein I 95.9 0.011 3.8E-07 49.0 5.8 36 166-201 32-67 (130)
423 3dxp_A Putative acyl-COA dehyd 92.1 0.21 7.2E-06 49.4 6.6 75 528-603 44-126 (359)
424 3f7w_A Putative fructosamine-3 90.5 0.33 1.1E-05 46.3 5.9 73 525-601 18-93 (288)
425 3jr1_A Putative fructosamine-3 90.5 0.74 2.5E-05 44.3 8.3 71 529-603 43-116 (312)
426 2olc_A MTR kinase, methylthior 88.2 0.67 2.3E-05 46.5 6.4 73 528-602 36-119 (397)
427 4gkh_A Aminoglycoside 3'-phosp 84.5 2.5 8.6E-05 39.4 8.0 68 533-603 35-105 (272)
428 3ats_A Putative uncharacterize 81.2 1.6 5.6E-05 42.7 5.4 73 531-603 30-118 (357)
429 3ovc_A Hygromycin-B 4-O-kinase 77.2 5.5 0.00019 39.1 7.8 68 529-602 48-118 (362)
430 3cxl_A N-chimerin; SH2, RHO-GA 76.4 0.47 1.6E-05 48.6 -0.3 56 535-590 152-216 (463)
431 3r70_A Aminoglycoside phosphot 75.9 3.5 0.00012 39.7 5.8 69 527-605 42-115 (320)
432 3tdw_A Gentamicin resistance p 74.8 4.8 0.00016 38.4 6.4 68 530-603 27-98 (306)
433 3sg8_A APH(2'')-ID; antibiotic 59.1 8.7 0.0003 36.4 4.6 69 529-603 27-101 (304)
434 2q83_A YTAA protein; 2635576, 53.3 19 0.00064 34.6 6.1 68 530-602 40-115 (346)
435 1zyl_A Hypothetical protein YI 46.7 34 0.0012 32.5 6.7 70 533-603 36-112 (328)
436 2lz0_A Uncharacterized protein 42.9 50 0.0017 25.1 5.7 46 418-464 7-52 (100)
437 2pyw_A Uncharacterized protein 41.8 36 0.0012 33.9 6.1 71 529-602 41-122 (420)
438 2lz0_A Uncharacterized protein 39.3 72 0.0025 24.2 6.1 13 160-172 38-50 (100)
439 1nw1_A Choline kinase (49.2 KD 37.2 41 0.0014 33.6 5.7 67 530-602 81-156 (429)
440 2ppq_A HSK, HK, homoserine kin 31.3 60 0.0021 30.6 5.6 71 530-603 30-108 (322)
441 3feg_A Choline/ethanolamine ki 30.1 61 0.0021 31.8 5.4 68 530-602 58-134 (379)
442 3ox7_P MH027; urokinase-type p 26.2 22 0.00076 17.8 0.7 10 40-49 5-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-63 Score=556.49 Aligned_cols=501 Identities=32% Similarity=0.476 Sum_probs=363.9
Q ss_pred cccCCCCCHHHHHHHHHhhccCCCCCCCcccCCCCCCCCCcceeeeeeCCCCCcEEEEEcCCCCCccc---CCccccCCC
Q 038393 3 ASANTTSITTDQQALLSLKGHVTEDPANFLARNWNTSSSVCNWTGVTCDVRTHRVTALNISGLNLTGT---IPSELGNLS 79 (618)
Q Consensus 3 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~---~~~~~~~l~ 79 (618)
.++.+++.++|++||++||..+ .||. .+.+ |+.++|||.|.||+|+ .++|+.|+|+++++.|. +|+++.+++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~-~~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVL-PDKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTC-SCTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred cCccccCCHHHHHHHHHHHhhC-CCcc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccC
Confidence 3455666889999999999999 4887 7776 9888899999999998 57999999999999987 666666666
Q ss_pred CCCEEeCCCCCCCCcCCcccc----------cCCcccccCCc--cCCCCCCCCEEeccCccccccCCccc-cCCCCCcEE
Q 038393 80 SLQTLDLSFNWFSGSIPASIF----------NINMFHGKIPS--TLSNCKRLRNISLSLNDFSGTIPKEI-GNVTKLIGL 146 (618)
Q Consensus 80 ~L~~L~Ls~n~~~~~~~~~~~----------~~n~~~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 146 (618)
+|+.++++.+.+.. +|+.+. +.|.+.|.+|. .++++++|++|+|++|.+++..|..+ .++++|++|
T Consensus 78 ~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 78 GLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred cccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 66666666655421 222221 22334555555 66777777777777777766666554 667777777
Q ss_pred EeeccccccccCcc---cCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCc
Q 038393 147 YLRGNQLQGEIPEE---LGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQ 223 (618)
Q Consensus 147 ~L~~n~i~~~~p~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~ 223 (618)
+|++|.+++..|.. +.++++|++|++++|.+++..| +..+++|++|++++|.+.+.++.++.+++|++|++++|.
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence 77777776666555 5666777777777776665443 366777777777777777666666677777777777777
Q ss_pred CcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCC-CCCcEEEeecccccccCC
Q 038393 224 LSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANC-SYLRILVLQFNNFSGAIP 302 (618)
Q Consensus 224 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~ 302 (618)
+++.+|..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|
T Consensus 235 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp CCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 77666777777777777777777776655543 36667777777777766666666553 777777777777776677
Q ss_pred ccccCCCCCCEEEcCCCCCc-cCccccccCCCCCCCEEEcccccCccccchhhhhccc----------------------
Q 038393 303 KEIGNLTKLEKLDLQFNRLR-ELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQ---------------------- 359 (618)
Q Consensus 303 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~---------------------- 359 (618)
..++.+++|++|++++|.+. .+|. ..+..+++|++|++++|.+++..|..+..+..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred hHHhcCCCccEEECCCCcccCcCCH-HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence 77777777777777777665 4442 23556666666666666666666655544432
Q ss_pred ----cccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCe
Q 038393 360 ----SIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQ 435 (618)
Q Consensus 360 ----~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 435 (618)
++++|++.+|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 4666666666666677777888888888888888888888888888888888888888888888888888888888
Q ss_pred EEcCCCcceeccchhhhcccCCCceecCCCCCcCC-CccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchh
Q 038393 436 LDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNF 514 (618)
Q Consensus 436 L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l 514 (618)
|++++|++++..|..+..+++|+.|++++|++++. |..++.+++|++|++++|++++.+|..+..+++|+.+++++|++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 88888888888888888888888888888888854 77788888888888888888888888888888888888888887
Q ss_pred h
Q 038393 515 S 515 (618)
Q Consensus 515 ~ 515 (618)
.
T Consensus 551 ~ 551 (768)
T 3rgz_A 551 N 551 (768)
T ss_dssp E
T ss_pred C
Confidence 6
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-55 Score=492.21 Aligned_cols=460 Identities=35% Similarity=0.533 Sum_probs=381.4
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccc----------cCCcccccCCccCCCCCCCCEEec
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIF----------NINMFHGKIPSTLSNCKRLRNISL 124 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~----------~~n~~~~~~p~~l~~l~~L~~L~L 124 (618)
.+++.|++++|.+++..+ +..+++|++|++++|.+.+.+|. +. +.|.+.+.+|..++++++|++|++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 456667777766665443 36666666777766666655554 22 234556677788888888888888
Q ss_pred cCccccccCCccccCCCCCcEEEeeccccccccCcccCCC-CCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcc
Q 038393 125 SLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNL-AELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTG 203 (618)
Q Consensus 125 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 203 (618)
++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++++++|++|++++|.+.+
T Consensus 255 s~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 255 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 888888777765 78888888888888888888888765 888899998888888888888888889999998888886
Q ss_pred cCCC--CCCCCCccEEEcccCcCcccCCccCCCCC-CCcEEeccCccCcccCchhhhhc-CCCCcEEEccCCcccccCCc
Q 038393 204 TIPY--AGNLFQLQWLDLSDNQLSGSFPSFKFKMP-RLQVLDLSVNGLSGELPANFCNN-FPFLEELYLSKNMFYGEIPS 279 (618)
Q Consensus 204 ~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~ 279 (618)
.+|. +..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+... +++|++|++++|.+++.+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 6663 47788888899988888888888887776 88888888888888777766432 57789999999988888888
Q ss_pred cCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccc
Q 038393 280 DLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQ 359 (618)
Q Consensus 280 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~ 359 (618)
.+.++++|++|++++|.+++.+|..++.+++|+.|++++|.+..... ..+..+++|++|++++|++++..|..+..++
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~- 490 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-QELMYVKTLETLILDFNDLTGEIPSGLSNCT- 490 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC-HHHcCCCCceEEEecCCcccCcCCHHHhcCC-
Confidence 88888999999999999888888888888999999999988884322 5677888899999999999888888888876
Q ss_pred cccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhh------------
Q 038393 360 SIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDL------------ 427 (618)
Q Consensus 360 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------ 427 (618)
+|++|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~ 570 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcc
Confidence 89999999999988888888889999999999999988888888889999999999998887766544
Q ss_pred ----------------------------------------------------------hcCCCCCeEEcCCCcceeccch
Q 038393 428 ----------------------------------------------------------CRLAALFQLDLGGNMLSGFIPA 449 (618)
Q Consensus 428 ----------------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~ 449 (618)
..+++|+.||+++|++++.+|.
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 650 (768)
T 3rgz_A 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650 (768)
T ss_dssp CSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG
T ss_pred ccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH
Confidence 2356789999999999999999
Q ss_pred hhhcccCCCceecCCCCCcCC-CccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhhhhcc
Q 038393 450 CFGNLTYLKKLNLGSNQLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELFQAT 521 (618)
Q Consensus 450 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l~~at 521 (618)
.++.++.|+.|++++|++++. |..+..++.|++|||++|+++|.+|..+..++.|+.+++++|+++...+..
T Consensus 651 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999999999999999965 889999999999999999999999999999999999999999997655443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-55 Score=481.82 Aligned_cols=470 Identities=21% Similarity=0.313 Sum_probs=278.7
Q ss_pred CCHHHHHHHHHhhccCCCCCCCcc--------cCCCCCCCCCcce---eeeeeCCCCCcEEEEEcCCCCCcccCCccccC
Q 038393 9 SITTDQQALLSLKGHVTEDPANFL--------ARNWNTSSSVCNW---TGVTCDVRTHRVTALNISGLNLTGTIPSELGN 77 (618)
Q Consensus 9 ~~~~~~~~ll~~~~~~~~~~~~~~--------~~~w~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~ 77 (618)
....|++||.+++..+.. + .|- ..+|+.++++|.| .||+|+.. ++|+.|+|+++++.|.+|+++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~-~-~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNG-K-NWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp HHHHHHHHHHHHHHHTTG-G-GCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGG
T ss_pred hHHHHHHHHHHHHHHcCC-C-CcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhc
Confidence 345789999999999832 2 222 1149988999999 99999864 79999999999999999999999
Q ss_pred CCCCCEEeCCCCCCC------C------cCCcccc-------cCCcccccCCccCC-------------------CCCCC
Q 038393 78 LSSLQTLDLSFNWFS------G------SIPASIF-------NINMFHGKIPSTLS-------------------NCKRL 119 (618)
Q Consensus 78 l~~L~~L~Ls~n~~~------~------~~~~~~~-------~~n~~~~~~p~~l~-------------------~l~~L 119 (618)
|++|++|+|++|.+. + .+|.... ..+.+.+.+|..+. ....+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 999999999999751 1 1111000 00011111111111 11111
Q ss_pred CEEecc--CccccccCCccccCCCCCcEEEeeccccccc-----------------cCcccC--CCCCCCEEecccCcCc
Q 038393 120 RNISLS--LNDFSGTIPKEIGNVTKLIGLYLRGNQLQGE-----------------IPEELG--NLAELEELWLQNNFLT 178 (618)
Q Consensus 120 ~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~ 178 (618)
+.+.+. +|++++ +|..|+++++|++|+|++|.+++. +|+.++ ++++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 211121 344444 455555555555555555555543 555555 5555555555555555
Q ss_pred ccCCccccCCCCCCEEEeeccc-Ccc-cCCC-CCCC------CCccEEEcccCcCcccCCc--cCCCCCCCcEEeccCcc
Q 038393 179 GTIPSSIFNLSSLSILDLSVNN-LTG-TIPY-AGNL------FQLQWLDLSDNQLSGSFPS--FKFKMPRLQVLDLSVNG 247 (618)
Q Consensus 179 ~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~-~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~ 247 (618)
+.+|..++++++|++|++++|+ +++ .+|. ++.+ ++|++|++++|.++ .+|. .+..+++|++|++++|+
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc
Confidence 5555555555555555555554 443 2221 1222 45555555555555 4444 45555555555555555
Q ss_pred CcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCC-CcEEEeecccccccCCccccCCC--CCCEEEcCCCCCccC
Q 038393 248 LSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSY-LRILVLQFNNFSGAIPKEIGNLT--KLEKLDLQFNRLREL 324 (618)
Q Consensus 248 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~ 324 (618)
++|.+| .+ ..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.|++++|.+...
T Consensus 342 l~g~ip-~~-~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 342 LEGKLP-AF-GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CEEECC-CC-EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred Cccchh-hh-CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence 555555 22 23455555555555555 44444555555 555555555555 4444444332 555555555555432
Q ss_pred ccccccC-------CCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchh-h-------hcccccceee
Q 038393 325 SFLSSLS-------NCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEE-I-------SNLTNLIAIY 389 (618)
Q Consensus 325 ~~~~~l~-------~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~-------~~l~~L~~L~ 389 (618)
.. ..+. .+++|++|++++|.++...+..+..++ +|++|++++|.+. .+|.. + .++++|+.|+
T Consensus 418 ~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 418 DG-KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS-PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC-CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEE
T ss_pred ch-hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC-CCCEEECCCCCCC-CcCHHHhccccccccccCCccEEE
Confidence 21 2222 344555555555555533332232232 4555555555554 22222 1 2334888888
Q ss_pred eCCcccccccCcccc--ccCCCceEEccccccccCCchhhhcCCCCCeEEc------CCCcceeccchhhhcccCCCcee
Q 038393 390 LGGNKLNGTIPITLG--KLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDL------GGNMLSGFIPACFGNLTYLKKLN 461 (618)
Q Consensus 390 L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~ 461 (618)
+++|++. .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|+
T Consensus 495 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp CCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred CcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 8888888 5666665 78888888888888886 7778888888888888 45677777888888888888888
Q ss_pred cCCCCCcCCCccccccccCcEEeCcCCcceecC
Q 038393 462 LGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSL 494 (618)
Q Consensus 462 l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~ 494 (618)
+++|+++.+|..+. +.|+.|++++|++....
T Consensus 573 Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 573 IGSNDIRKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence 88888877666554 68888888888776443
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-55 Score=487.39 Aligned_cols=489 Identities=21% Similarity=0.267 Sum_probs=345.6
Q ss_pred CCCHHHHHHHHHhhccCCCCCCCcccCCCCCCC-----CC--cce------------eeeeeCCCCCcEEEEEcCCCCCc
Q 038393 8 TSITTDQQALLSLKGHVTEDPANFLARNWNTSS-----SV--CNW------------TGVTCDVRTHRVTALNISGLNLT 68 (618)
Q Consensus 8 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~ 68 (618)
++..+|++||++||..+ .+| + |+.+. +| |.| .||.|+. .++|+.|+|+++++.
T Consensus 265 ~~~~~d~~ALl~~k~~l-~~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEAL-DGK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CHHHHHHHHHHHHHHHT-TGG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred ccchHHHHHHHHHHHHc-CCC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 34568999999999999 555 3 65443 56 999 9999986 579999999999999
Q ss_pred ccCCccccCCCCCCEEeC-CCCCCCCcCCcccccC--------------------------Ccc-----------cccCC
Q 038393 69 GTIPSELGNLSSLQTLDL-SFNWFSGSIPASIFNI--------------------------NMF-----------HGKIP 110 (618)
Q Consensus 69 ~~~~~~~~~l~~L~~L~L-s~n~~~~~~~~~~~~~--------------------------n~~-----------~~~~p 110 (618)
|.+|++|++|++|++|+| ++|.+.|..|-..... ..+ ....+
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 8887766533221000 000 00001
Q ss_pred ccCCCCCCCCEEeccC--ccccccCCccccCCCCCcEEEeecccccc-----------------ccCcccC--CCCCCCE
Q 038393 111 STLSNCKRLRNISLSL--NDFSGTIPKEIGNVTKLIGLYLRGNQLQG-----------------EIPEELG--NLAELEE 169 (618)
Q Consensus 111 ~~l~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------~~p~~l~--~l~~L~~ 169 (618)
........++.+.+.. |.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 1112223344444433 66665 67777777777777777777776 2677766 7777777
Q ss_pred EecccCcCcccCCccccCCCCCCEEEeeccc-Ccc-cCC--------CCCCCCCccEEEcccCcCcccCCc--cCCCCCC
Q 038393 170 LWLQNNFLTGTIPSSIFNLSSLSILDLSVNN-LTG-TIP--------YAGNLFQLQWLDLSDNQLSGSFPS--FKFKMPR 237 (618)
Q Consensus 170 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~--------~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~ 237 (618)
|+|++|.+.+.+|..++++++|++|++++|+ +++ .+| ....+++|++|++++|.++ .+|. .+.++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 7777777777777777777777777777776 665 333 1233447777777777777 5666 6777777
Q ss_pred CcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCC-CcEEEeecccccccCCccccCCCC--CCEE
Q 038393 238 LQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSY-LRILVLQFNNFSGAIPKEIGNLTK--LEKL 314 (618)
Q Consensus 238 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L 314 (618)
|+.|++++|.++ .+| .+ ..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|
T Consensus 575 L~~L~Ls~N~l~-~lp-~~-~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AF-GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp CCEEECTTSCCC-BCC-CC-CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCEEECCCCCcc-cch-hh-cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 777777777777 666 33 34677777777777776 66666777777 777777777776 56666655543 7777
Q ss_pred EcCCCCCccCcc-c-cccC--CCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhh--------cc
Q 038393 315 DLQFNRLRELSF-L-SSLS--NCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEIS--------NL 382 (618)
Q Consensus 315 ~L~~n~l~~~~~-~-~~l~--~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--------~l 382 (618)
++++|.+..... + ..+. .+++|+.|++++|.++...+..+..++ +|+.|++++|.+. .+|..+. ++
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~-~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS-PISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTC-CCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCC-CCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 777777754321 0 1111 334677777777777744333333443 7777777777776 4444332 34
Q ss_pred cccceeeeCCcccccccCcccc--ccCCCceEEccccccccCCchhhhcCCCCCeEEcCC------Ccceeccchhhhcc
Q 038393 383 TNLIAIYLGGNKLNGTIPITLG--KLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG------NMLSGFIPACFGNL 454 (618)
Q Consensus 383 ~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l 454 (618)
++|+.|+|++|++. .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+
T Consensus 728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 48999999999998 6777776 89999999999999997 688888999999999976 77888889999999
Q ss_pred cCCCceecCCCCCcCCCccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhh
Q 038393 455 TYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSEL 517 (618)
Q Consensus 455 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l 517 (618)
++|+.|++++|++..+|..+. ++|+.|+|++|++....+..+.....+..+.+.+|+.+.+
T Consensus 806 ~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 806 PSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866 (876)
T ss_dssp SSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred CCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence 999999999999977777655 6899999999999877666665555556666676665554
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-52 Score=453.28 Aligned_cols=444 Identities=23% Similarity=0.218 Sum_probs=257.2
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCC
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIP 134 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 134 (618)
..++.|++++|.+++..|..|+++++|++|+|++|.+.+.. |..|+++++|++|+|++|.+++..|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--------------~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH--------------EDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC--------------TTTTTTCTTCCEEECTTCCCSEECT
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeC--------------hhhccCccccCeeeCCCCcccccCh
Confidence 57999999999999998999999999999999999996433 4445555555555555555555555
Q ss_pred ccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCC-CCCCCC
Q 038393 135 KEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPY-AGNLFQ 213 (618)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~ 213 (618)
..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. ++.+++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 178 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcc
Confidence 5555555555555555555544444555555555555555555543323333355555555555555443322 133444
Q ss_pred cc--EEEcccCcCcccCCccCCCC---------------------------------------------------CCCcE
Q 038393 214 LQ--WLDLSDNQLSGSFPSFKFKM---------------------------------------------------PRLQV 240 (618)
Q Consensus 214 L~--~L~l~~n~l~~~~~~~~~~l---------------------------------------------------~~L~~ 240 (618)
|+ +|++++|.+++..|..+... .+|+.
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 44 45555555444333322110 04555
Q ss_pred EeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCC
Q 038393 241 LDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNR 320 (618)
Q Consensus 241 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 320 (618)
|++++|.++ .++...+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 259 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 259 INLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp EECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCS
T ss_pred EEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCC
Confidence 555555555 333333334566666666666665 445556666666666666666665555556666666666666665
Q ss_pred Cc-cCccccccCCCCCCCEEEcccccCcccc--chhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCccccc
Q 038393 321 LR-ELSFLSSLSNCKYLKYFSLSNNLLDGIL--PRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNG 397 (618)
Q Consensus 321 l~-~~~~~~~l~~~~~L~~L~ls~n~l~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 397 (618)
+. .++. ..+..+++|++|++++|.+++.. +..+..++ +|++|++++|.+.+..|..+..+++|+.|++++|++.+
T Consensus 337 ~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 337 KRLELGT-GCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp SCCBCCS-STTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred cccccch-hhhhccCcCCEEECCCCccccccCcchhcccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 54 2322 33555666666666666665554 44455544 56666666666655555556666666666666666654
Q ss_pred ccCc-cccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceec---cchhhhcccCCCceecCCCCCcCC-Cc
Q 038393 398 TIPI-TLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGF---IPACFGNLTYLKKLNLGSNQLTST-SS 472 (618)
Q Consensus 398 ~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~-~~ 472 (618)
..+. .+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+. .+..+..+++|+.|++++|+++.. +.
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 4433 255566666666666666555555566666666666666665542 123455566666666666666555 44
Q ss_pred cccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhh
Q 038393 473 TLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSEL 517 (618)
Q Consensus 473 ~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l 517 (618)
.+..++.|++|++++|++++..|..+..++.| .+++++|+++.+
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 55555666666666666665555556666666 666666655543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.8e-49 Score=432.91 Aligned_cols=440 Identities=23% Similarity=0.235 Sum_probs=388.6
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcccc
Q 038393 59 ALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIG 138 (618)
Q Consensus 59 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 138 (618)
.++.++.+++ .+|..+.. .+++|++++|.++ +..|..|+++++|++|+|++|.+++..|..|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~--------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 78 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLP--------------TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ 78 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCS--------------EECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred eEECCCCCcc-cCcCCCCC--cCcEEEccCCccC--------------cCChhHhccCccceEEECCCCccceeChhhcc
Confidence 4566677776 55665654 7999999999995 34567899999999999999999999999999
Q ss_pred CCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCccc-CCCCCCCCCccEE
Q 038393 139 NVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGT-IPYAGNLFQLQWL 217 (618)
Q Consensus 139 ~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L 217 (618)
++++|++|+|++|.+++..|..|+.+++|++|++++|.+++..+..++++++|++|++++|.+.+. .+....+++|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 999999999999999988899999999999999999999987788899999999999999999874 3555669999999
Q ss_pred EcccCcCcccCCccCCCCCCCc--EEeccCccCcccCchhhhh-------------------------------------
Q 038393 218 DLSDNQLSGSFPSFKFKMPRLQ--VLDLSVNGLSGELPANFCN------------------------------------- 258 (618)
Q Consensus 218 ~l~~n~l~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~~~~~------------------------------------- 258 (618)
++++|.+++..+..+..+++|+ .|++++|.+++..|..+..
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 9999999988888888999999 8999999998655543311
Q ss_pred -----------cC--CCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCc
Q 038393 259 -----------NF--PFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELS 325 (618)
Q Consensus 259 -----------~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 325 (618)
.+ .+|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+..++
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence 00 16788999999998888888999999999999999998 67888999999999999999999875
Q ss_pred cccccCCCCCCCEEEcccccCccccch-hhhhccccccEEEeeecccccCC--chhhhcccccceeeeCCcccccccCcc
Q 038393 326 FLSSLSNCKYLKYFSLSNNLLDGILPR-AIGNLSQSIEEFWIVSCNISGGI--PEEISNLTNLIAIYLGGNKLNGTIPIT 402 (618)
Q Consensus 326 ~~~~l~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~ 402 (618)
. ..+..+++|++|++++|.+.+..+. .+..++ ++++|++++|.+.+.. +..+..+++|+.|++++|++.+..+..
T Consensus 318 ~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 318 Q-ISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp G-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred h-hhhhccCcCCEEECCCCCcccccchhhhhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 4 6788999999999999999866554 466665 9999999999998766 778999999999999999999999999
Q ss_pred ccccCCCceEEccccccccCCch-hhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCC----Ccccccc
Q 038393 403 LGKLQKLQLLSFEDNQLEGSIPN-DLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTST----SSTLWNI 477 (618)
Q Consensus 403 ~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~ 477 (618)
+..+++|++|++++|++++..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++. +..+..+
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC
Confidence 99999999999999999877654 488999999999999999998999999999999999999999873 3567889
Q ss_pred ccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhhh
Q 038393 478 KYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELF 518 (618)
Q Consensus 478 ~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l~ 518 (618)
++|++|++++|++++..|..+..+++|+.|++++|+++.+.
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCC
Confidence 99999999999999999999999999999999999998764
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.6e-49 Score=436.93 Aligned_cols=459 Identities=24% Similarity=0.241 Sum_probs=251.8
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccc----------cCCcccccCCccCCCCCCCCEEec
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIF----------NINMFHGKIPSTLSNCKRLRNISL 124 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~----------~~n~~~~~~p~~l~~l~~L~~L~L 124 (618)
.+++.|+|++|++++..+..|+++++|++|++++|.+.+..|..+. +.|.+.+..+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 5899999999999988888899999999999999999765554332 234444333345666777777777
Q ss_pred cCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCcccc--CCCCCCEEEeecccCc
Q 038393 125 SLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIF--NLSSLSILDLSVNNLT 202 (618)
Q Consensus 125 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~ 202 (618)
++|.+++..|..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 77777665556667777777777777776666666666677777777777766655544433 4466777777777666
Q ss_pred ccCCCC-CC---------------------------CCCccEEEcccCcCcccCCccCCCCCC--CcEEeccCccCcccC
Q 038393 203 GTIPYA-GN---------------------------LFQLQWLDLSDNQLSGSFPSFKFKMPR--LQVLDLSVNGLSGEL 252 (618)
Q Consensus 203 ~~~~~~-~~---------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~ 252 (618)
+..+.. .. .++|++|++++|.+++..+..+..++. |+.|++++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 544431 11 145666777777776666666665543 888888888777544
Q ss_pred chhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccc-----cCCc----cccCCCCCCEEEcCCCCCcc
Q 038393 253 PANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSG-----AIPK----EIGNLTKLEKLDLQFNRLRE 323 (618)
Q Consensus 253 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~----~~~~l~~L~~L~L~~n~l~~ 323 (618)
+..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|...+ .+|. .|..+++|+.|++++|.+..
T Consensus 265 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 265 NDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred cccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 4444 447788888888887776666555555555555444432221 1111 33344444444444444443
Q ss_pred CccccccCCCCC----------------------------CCEEEcccccCccccchhhhhccccccEEEeeecccccCC
Q 038393 324 LSFLSSLSNCKY----------------------------LKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGI 375 (618)
Q Consensus 324 ~~~~~~l~~~~~----------------------------L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 375 (618)
++. ..+..+++ |+.|++++|++++..|..+..+. +++.|++++|.+.+.+
T Consensus 344 ~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 344 IKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCEEEC
T ss_pred CCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC-CCCEEeCCCCcCcccc
Confidence 332 22333333 33333334444444444444443 4555555555554433
Q ss_pred c-hhhhcccccceeeeCCcccccccC--------------------------ccccccCCCceEEccccccccCCchhhh
Q 038393 376 P-EEISNLTNLIAIYLGGNKLNGTIP--------------------------ITLGKLQKLQLLSFEDNQLEGSIPNDLC 428 (618)
Q Consensus 376 ~-~~~~~l~~L~~L~L~~n~i~~~~~--------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 428 (618)
| ..+..+++|++|++++|++.+..+ ..+..+++|+.|++++|++++..+..|.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 3 344444555555555554443333 3333344444444444444433333344
Q ss_pred cCCCCCeEEcCCCcceeccc--------hhhhcccCCCceecCCCCCcCCCc-cccccccCcEEeCcCCcceecCCCCCc
Q 038393 429 RLAALFQLDLGGNMLSGFIP--------ACFGNLTYLKKLNLGSNQLTSTSS-TLWNIKYILYLNLSSNSFTGSLPLGIG 499 (618)
Q Consensus 429 ~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~ls~n~l~~~~p~~l~ 499 (618)
.+++|+.|++++|++++..+ ..|..+++|+.|++++|+++.++. .+..+++|++|++++|++++..+..+.
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 44444444444444433211 113344444444444444444422 233444444455544444443333444
Q ss_pred ccccceeeccccchhhh
Q 038393 500 NLKVLVQIDLSMNNFSE 516 (618)
Q Consensus 500 ~l~~L~~l~l~~n~l~~ 516 (618)
.+++|+.+++++|+++.
T Consensus 582 ~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITS 598 (680)
T ss_dssp TCTTCCEEECTTSCCCB
T ss_pred CCCCCCEEECCCCcCCc
Confidence 44455555555554443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.8e-49 Score=432.83 Aligned_cols=439 Identities=20% Similarity=0.147 Sum_probs=309.0
Q ss_pred CCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccC
Q 038393 54 THRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTI 133 (618)
Q Consensus 54 ~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 133 (618)
..+++.|+|++|.+++..+..|+++++|++|++++|.+. +..|..|+++++|++|+|++|.+++..
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE--------------TIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--------------EECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc--------------ccCHHHhhchhhcCEeECCCCcccccC
Confidence 357999999999999998889999999999999999985 334556777777888888887777777
Q ss_pred CccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcc-cCCccccCCCCCCEEEeecccCcccCCCC-CCC
Q 038393 134 PKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTG-TIPSSIFNLSSLSILDLSVNNLTGTIPYA-GNL 211 (618)
Q Consensus 134 ~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l 211 (618)
|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+.. +.+
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 176 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh
Confidence 7777778888888888887776666677777788888888777765 45777777778888888877777655432 333
Q ss_pred CC----ccEEEcccCcCcccCCccCCCCCCCcEEeccCccCc--------------------------------------
Q 038393 212 FQ----LQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLS-------------------------------------- 249 (618)
Q Consensus 212 ~~----L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------------------- 249 (618)
++ +++|++++|.+++..+..+. ..+|+.|++++|.+.
T Consensus 177 ~~L~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 177 RENPQVNLSLDMSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hccccccceeeccCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 33 33677777777654444433 336666666666543
Q ss_pred --------------------ccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCC
Q 038393 250 --------------------GELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLT 309 (618)
Q Consensus 250 --------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 309 (618)
+.+|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .++
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~ 328 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLP 328 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCS
T ss_pred hhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCC
Confidence 12222 2336778888888887753 44 677777888888888887 4566 34 777
Q ss_pred CCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCcccc--chhhhhccccccEEEeeecccccCCchhhhcccccce
Q 038393 310 KLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGIL--PRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIA 387 (618)
Q Consensus 310 ~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 387 (618)
+|+.|++++|..... ..+..+++|++|++++|.+++.. +..+..++ ++++|++++|.+.+ +|..+..+++|+.
T Consensus 329 ~L~~L~l~~n~~~~~---~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 329 FLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp SCCEEEEESCSSCEE---CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCS-CCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred ccceeeccCCcCccc---hhhccCCCCCEEECcCCccCCCcchhhhhccCC-cccEeECCCCcccc-chhhccCCCCCCe
Confidence 777777777743321 13456777777777777776653 56666655 67777777777664 3456677777777
Q ss_pred eeeCCcccccccC-ccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCccee-ccchhhhcccCCCceecCCC
Q 038393 388 IYLGGNKLNGTIP-ITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSG-FIPACFGNLTYLKKLNLGSN 465 (618)
Q Consensus 388 L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~l~~n 465 (618)
|++++|++.+..+ ..+..+++|++|++++|++++..|..+..+++|+.|++++|++++ ..|..+..+++|+.|++++|
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 7777777776655 566677777777777777776677777777777777777777766 35666777777777777777
Q ss_pred CCcCC-CccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhhhh
Q 038393 466 QLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELFQ 519 (618)
Q Consensus 466 ~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l~~ 519 (618)
++++. +..+..+++|++|++++|++++..|..+..+++|+.|++++|+++.+..
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH
Confidence 77666 4556667777777777777777667777777777777777777665543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-48 Score=442.51 Aligned_cols=459 Identities=22% Similarity=0.219 Sum_probs=306.0
Q ss_pred cceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCc-ccc----------cCCcccccCCc
Q 038393 43 CNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPA-SIF----------NINMFHGKIPS 111 (618)
Q Consensus 43 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~----------~~n~~~~~~p~ 111 (618)
|+|..|.+ -..+++.|+|++|.+++..|..|+++++|++|+|++|...+.+++ .+. +.|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 56888877 457899999999999999999999999999999999976544422 221 22333444445
Q ss_pred cCCCCCCCCEEeccCccccccCCcc--ccCCCCCcEEEeeccccccccC-cccCCCCCCCEEecccCcCcccCCccccCC
Q 038393 112 TLSNCKRLRNISLSLNDFSGTIPKE--IGNVTKLIGLYLRGNQLQGEIP-EELGNLAELEELWLQNNFLTGTIPSSIFNL 188 (618)
Q Consensus 112 ~l~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~i~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 188 (618)
.|+++++|++|+|++|.+++.+|.. |+++++|++|+|++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 5555555555555555554433332 4455555555555555543322 344555555555555555544444444444
Q ss_pred --CCCCEEEeecccCcccCCCC-CCCC------CccEEEcccCcCcccCCccCCC-------------------------
Q 038393 189 --SSLSILDLSVNNLTGTIPYA-GNLF------QLQWLDLSDNQLSGSFPSFKFK------------------------- 234 (618)
Q Consensus 189 --~~L~~L~l~~n~l~~~~~~~-~~l~------~L~~L~l~~n~l~~~~~~~~~~------------------------- 234 (618)
++|+.|++++|.+.+..+.. ..+. +|++|++++|.+++..+..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 44555555555544433221 2222 2777777777655443332211
Q ss_pred -------------CCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccC
Q 038393 235 -------------MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAI 301 (618)
Q Consensus 235 -------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 301 (618)
.++|+.|++++|.+.+..+..+ ..+++|+.|+|++|.+.+..+..|..+++|++|++++|.+.+..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhh-hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 2567777777777764444333 44777777777777777777777777777777777777777666
Q ss_pred CccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccC-------
Q 038393 302 PKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGG------- 374 (618)
Q Consensus 302 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~------- 374 (618)
|..|..+++|+.|++++|.+..++. ..+..+++|++|++++|.+++... + ++++.+++++|.+...
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~-----~-~~L~~L~l~~N~l~~l~~~~~~l 403 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIHF-----I-PSIPDIFLSGNKLVTLPKINLTA 403 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCSS-----C-CSCSEEEEESCCCCCCCCCCTTC
T ss_pred HHHhcCCCCCCEEECCCCCCCccCh-hhhcCCCCCCEEECCCCCCCcccC-----C-CCcchhccCCCCccccccccccc
Confidence 7777777777777777777776654 456677777777777777765432 1 2455555555544321
Q ss_pred --------------CchhhhcccccceeeeCCcccccccCc-cccccCCCceEEccccccc-----cCCchhhhcCCCCC
Q 038393 375 --------------IPEEISNLTNLIAIYLGGNKLNGTIPI-TLGKLQKLQLLSFEDNQLE-----GSIPNDLCRLAALF 434 (618)
Q Consensus 375 --------------~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~ 434 (618)
.+..+..+++|+.|++++|++.+..+. .+..+++|+.|++++|.++ +..+..|..+++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 112244778888889988888755433 3556788999999999886 34456688889999
Q ss_pred eEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchh
Q 038393 435 QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNF 514 (618)
Q Consensus 435 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l 514 (618)
.|+|++|++++..+..|..+++|+.|++++|+++..+..... ++|+.|++++|++++..|..+. .|+.+++++|++
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~ 559 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKF 559 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECC
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCc
Confidence 999999999998888999999999999999999988655444 8899999999999988887654 678889998876
Q ss_pred h
Q 038393 515 S 515 (618)
Q Consensus 515 ~ 515 (618)
.
T Consensus 560 ~ 560 (844)
T 3j0a_A 560 I 560 (844)
T ss_dssp C
T ss_pred c
Confidence 3
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-47 Score=424.17 Aligned_cols=459 Identities=23% Similarity=0.235 Sum_probs=317.1
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCc-ccc----------cCCcccccCCccCCCCCCCCEEe
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPA-SIF----------NINMFHGKIPSTLSNCKRLRNIS 123 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~----------~~n~~~~~~p~~l~~l~~L~~L~ 123 (618)
.+++.|+|++|.+++..|..|+++++|++|+|++|.+.+ +|. .+. +.|.+.+..|..++++++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 467788888888877777777778888888888887763 343 222 23555555667788888888888
Q ss_pred ccCccccccCCccccCCCCCcEEEeeccccccccCcccC--CCCCCCEEecccCcCcccCCccccCC-------------
Q 038393 124 LSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELG--NLAELEELWLQNNFLTGTIPSSIFNL------------- 188 (618)
Q Consensus 124 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l------------- 188 (618)
+++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 888888877777788888888888888887766555543 44677777777777766555544432
Q ss_pred --------------CCCCEEEeecccCcccCCCC-CCCC--CccEEEcccCcCcccCCccCCCCCCCcEEeccCccCccc
Q 038393 189 --------------SSLSILDLSVNNLTGTIPYA-GNLF--QLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGE 251 (618)
Q Consensus 189 --------------~~L~~L~l~~n~l~~~~~~~-~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 251 (618)
++|+.|++++|.+.+..+.. ..++ +|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 23344444444444333322 2222 255555555555544444444555555555555544433
Q ss_pred Cchh--------------------------------hhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeeccc---
Q 038393 252 LPAN--------------------------------FCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNN--- 296 (618)
Q Consensus 252 ~~~~--------------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~--- 296 (618)
.|.. .+..+++|++|++++|.+.+..+..|.++++|++|++++|.
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 2222 22346677777777777776666666666666666655443
Q ss_pred -------------------------ccccCCccccCCCCCCEEEcCCCCCcc-CccccccCCCCCCCEEEcccccCcccc
Q 038393 297 -------------------------FSGAIPKEIGNLTKLEKLDLQFNRLRE-LSFLSSLSNCKYLKYFSLSNNLLDGIL 350 (618)
Q Consensus 297 -------------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~~~~L~~L~ls~n~l~~~~ 350 (618)
+++..|..|..+++|+.|++++|.+.. ++. ..+..+++|++|++++|++++..
T Consensus 368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCSEEECC
T ss_pred hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCCcceeC
Confidence 333334455555556666666655543 221 34555566666666666666555
Q ss_pred chhhhhccccccEEEeeecccc--cCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCc----
Q 038393 351 PRAIGNLSQSIEEFWIVSCNIS--GGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIP---- 424 (618)
Q Consensus 351 ~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---- 424 (618)
+..+..++ +++.|++.+|.+. +..|..+..+++|+.|++++|++.+..+..+.++++|++|++++|++++..+
T Consensus 447 ~~~~~~~~-~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 447 RNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TTTTTTCT-TCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred hhhhhcCc-ccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhcc
Confidence 55555554 6667777666654 4677888999999999999999998888889999999999999999986422
Q ss_pred ----hhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCcc-ccccccCcEEeCcCCcceecCCCCCc
Q 038393 425 ----NDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSST-LWNIKYILYLNLSSNSFTGSLPLGIG 499 (618)
Q Consensus 425 ----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~ls~n~l~~~~p~~l~ 499 (618)
..|..+++|+.|++++|+++.+.+..|..+++|+.|++++|+++.++.. +..+++|+.|++++|++++..|..+.
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 2378899999999999999977777899999999999999999998554 56889999999999999987777676
Q ss_pred -ccccceeeccccchhhh
Q 038393 500 -NLKVLVQIDLSMNNFSE 516 (618)
Q Consensus 500 -~l~~L~~l~l~~n~l~~ 516 (618)
.+++|+.+++++|++.-
T Consensus 606 ~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp HHHTTCSEEECTTCCCCB
T ss_pred ccccccCEEEccCCCccc
Confidence 78899999999998753
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-47 Score=412.07 Aligned_cols=436 Identities=21% Similarity=0.174 Sum_probs=310.7
Q ss_pred CCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccC
Q 038393 54 THRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTI 133 (618)
Q Consensus 54 ~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 133 (618)
..+++.|++++|.+++..+.+|.++++|++|++++|++. +..|..|+++++|++|+|++|.+++..
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--------------TIEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC--------------EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC--------------ccCcccccCchhCCEEeCcCCcCCccC
Confidence 357999999999999988889999999999999999985 344567889999999999999999888
Q ss_pred CccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcc-cCCccccCCCCCCEEEeecccCcccCCC-CCCC
Q 038393 134 PKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTG-TIPSSIFNLSSLSILDLSVNNLTGTIPY-AGNL 211 (618)
Q Consensus 134 ~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l 211 (618)
|..|+++++|++|++++|.+++..+..++.+++|++|++++|.+++ .+|..++++++|++|++++|.+.+..+. +..+
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 172 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch
Confidence 8899999999999999999986655579999999999999999986 4688999999999999999999876543 3556
Q ss_pred CCc----cEEEcccCcCcccCCccCCCCCCCcEEeccCccCc--------------------------------------
Q 038393 212 FQL----QWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLS-------------------------------------- 249 (618)
Q Consensus 212 ~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------------------- 249 (618)
++| ++|++++|.+++..+..+... +|+.|++++|...
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 251 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTT
T ss_pred hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhh
Confidence 666 899999999988777766554 7888888877321
Q ss_pred --------------------ccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCC
Q 038393 250 --------------------GELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLT 309 (618)
Q Consensus 250 --------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 309 (618)
+..+..+ ..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..++
T Consensus 252 ~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~ 325 (570)
T 2z63_A 252 EGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLK 325 (570)
T ss_dssp GGGGGSEEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCS
T ss_pred ccccccchhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccc
Confidence 1122222 22455666666666555 345555555 6666666666655 3332 3455
Q ss_pred CCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCcccc--chhhhhccccccEEEeeecccccCCchhhhcccccce
Q 038393 310 KLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGIL--PRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIA 387 (618)
Q Consensus 310 ~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 387 (618)
+|+.|++++|.+..... ...+++|++|++++|.+++.. +..+..++ ++++|++++|.+.+..+. +..+++|+.
T Consensus 326 ~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~-~~~l~~L~~ 400 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSN-FLGLEQLEH 400 (570)
T ss_dssp SCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCS-CCCEEECCSCSEEEEEEE-EETCTTCCE
T ss_pred ccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCccccccccccccC-ccCEEECCCCcccccccc-ccccCCCCE
Confidence 66666666665543321 145666777777777666554 45555554 677777777766654433 666677777
Q ss_pred eeeCCcccccccC-ccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcce-eccchhhhcccCCCceecCCC
Q 038393 388 IYLGGNKLNGTIP-ITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLS-GFIPACFGNLTYLKKLNLGSN 465 (618)
Q Consensus 388 L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n 465 (618)
|++++|.+.+..+ ..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 7777777665544 35666677777777777776666666667777777777777765 345666667777777777777
Q ss_pred CCcCC-CccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhh
Q 038393 466 QLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFS 515 (618)
Q Consensus 466 ~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~ 515 (618)
+++.. +..+..+++|++|++++|++++..|..+..+++|+.+++++|+++
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 77666 555666677777777777777666666666777777777776654
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.8e-47 Score=415.12 Aligned_cols=430 Identities=21% Similarity=0.181 Sum_probs=374.5
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcccc
Q 038393 59 ALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIG 138 (618)
Q Consensus 59 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 138 (618)
.++.++++++ .+|..+. ++|++|++++|.+. +..+..|.++++|++|++++|.+++..|..|+
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLK--------------ILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcC--------------EeChhhccCCccCcEEeCCCCcccccCHHHhh
Confidence 5788888888 4565554 79999999999985 34556789999999999999999988899999
Q ss_pred CCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcc-c-CCCCCCCCCccE
Q 038393 139 NVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTG-T-IPYAGNLFQLQW 216 (618)
Q Consensus 139 ~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~-~~~~~~l~~L~~ 216 (618)
++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ . +..++.+++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 99999999999999998889999999999999999999998877889999999999999999985 3 344588999999
Q ss_pred EEcccCcCcccCCccCCCCCCCc----EEeccCccCcccCchhhhhcCCCCcEEEccCCccc------------------
Q 038393 217 LDLSDNQLSGSFPSFKFKMPRLQ----VLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFY------------------ 274 (618)
Q Consensus 217 L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~------------------ 274 (618)
|++++|.+++..+..+..+++|+ +|++++|.++ .++...+. ..+|++|++++|.+.
T Consensus 158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~ 235 (606)
T 3vq2_A 158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235 (606)
T ss_dssp EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEE
T ss_pred EEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCccccc-CceeeeeeccCCccchhHHHHHhcccccccccc
Confidence 99999999988888777666554 8999999998 55555555 348999999988653
Q ss_pred ----------------------------------------ccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEE
Q 038393 275 ----------------------------------------GEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKL 314 (618)
Q Consensus 275 ----------------------------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 314 (618)
+..|. +..+++|+.|++++|.+.. +| .+..+++|+.|
T Consensus 236 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L 312 (606)
T 3vq2_A 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSL 312 (606)
T ss_dssp EEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEE
T ss_pred ccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEE
Confidence 12232 6678899999999999974 55 78999999999
Q ss_pred EcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccC--CchhhhcccccceeeeCC
Q 038393 315 DLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGG--IPEEISNLTNLIAIYLGG 392 (618)
Q Consensus 315 ~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~ 392 (618)
++++|.+..+|. + .+++|++|++++|...+.. .+..++ ++++|++++|.+.+. .+..+..+++|++|++++
T Consensus 313 ~l~~n~l~~lp~---~-~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 313 SIIRCQLKQFPT---L-DLPFLKSLTLTMNKGSISF--KKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp EEESCCCSSCCC---C-CCSSCCEEEEESCSSCEEC--CCCCCT-TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred EcccccCccccc---C-CCCccceeeccCCcCccch--hhccCC-CCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 999999988873 3 8999999999999655544 344554 899999999999876 478899999999999999
Q ss_pred cccccccCccccccCCCceEEccccccccCCc-hhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcC--
Q 038393 393 NKLNGTIPITLGKLQKLQLLSFEDNQLEGSIP-NDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTS-- 469 (618)
Q Consensus 393 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 469 (618)
|.+.+ +|..+..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++
T Consensus 386 n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp CSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Ccccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 99985 55888999999999999999998877 688999999999999999999999999999999999999999997
Q ss_pred CCccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhhh
Q 038393 470 TSSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELF 518 (618)
Q Consensus 470 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l~ 518 (618)
.+..+..+++|++|++++|.+++..|..+..+++|+.|++++|+++++.
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC
Confidence 4778889999999999999999999999999999999999999998763
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.8e-48 Score=416.40 Aligned_cols=448 Identities=19% Similarity=0.209 Sum_probs=293.7
Q ss_pred CcceeeeeeCCC-----------CCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCC
Q 038393 42 VCNWTGVTCDVR-----------THRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIP 110 (618)
Q Consensus 42 ~c~w~gv~c~~~-----------~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p 110 (618)
.|.|.|+ |+.+ ..+++.|++++|.+++..|..|+++++|++|++++|++.+ ..|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--------------~~~ 67 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--------------IEG 67 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--------------ECT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--------------cCh
Confidence 4888887 7643 2478899999999988888888999999999999998853 334
Q ss_pred ccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeecccccc-ccCcccCCCCCCCEEecccCcCcccC-CccccCC
Q 038393 111 STLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQG-EIPEELGNLAELEELWLQNNFLTGTI-PSSIFNL 188 (618)
Q Consensus 111 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l 188 (618)
..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..+.++
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 456666666666666666665555556666666666666666654 23455666666666666666632233 3456666
Q ss_pred CCCCEEEeecccCcccCCC-CCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcc-----------------
Q 038393 189 SSLSILDLSVNNLTGTIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSG----------------- 250 (618)
Q Consensus 189 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------- 250 (618)
++|++|++++|.+.+..+. +..+++|++|+++.|.+.......+..+++|++|++++|++++
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 6666666666666654432 2445555555555554432211112234455555555555443
Q ss_pred ----------cCchhhh---hcCCCCcEEEccCCcccccC------CccCCCCCCCcEEEeeccccccc-----CCcccc
Q 038393 251 ----------ELPANFC---NNFPFLEELYLSKNMFYGEI------PSDLANCSYLRILVLQFNNFSGA-----IPKEIG 306 (618)
Q Consensus 251 ----------~~~~~~~---~~l~~L~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~ 306 (618)
..+..+. ..+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+... .+..+.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 2222111 12344444444444443211 11234445555555555544321 111122
Q ss_pred CCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchh---hhhccccccEEEeeecccccCCc--hhhhc
Q 038393 307 NLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRA---IGNLSQSIEEFWIVSCNISGGIP--EEISN 381 (618)
Q Consensus 307 ~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--~~~~~ 381 (618)
..++|+.|++++|.+..+|. ..+..+++|++|++++|++++..|.. +..++ +|++|++++|.+.+..+ ..+..
T Consensus 308 ~~~~L~~L~l~~n~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 308 LLEKVKRITVENSKVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp HSTTCCEEEEESSCCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST-TCCEEECTTSCCCCHHHHHHHGGG
T ss_pred hcccceEEEeccCccccCCH-HHHhcCccccEEEccCCccccccccchhhhhccc-cCcEEEccCCcccccccchhhhhc
Confidence 34678888888888877763 22356888888888888888766433 44444 78888888888876532 45778
Q ss_pred ccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCcee
Q 038393 382 LTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLN 461 (618)
Q Consensus 382 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 461 (618)
+++|++|++++|++. .+|..+..+++|++|++++|+++. +|..+ .++|+.|++++|++++.. ..+++|+.|+
T Consensus 386 l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~ 457 (549)
T 2z81_A 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELY 457 (549)
T ss_dssp CTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEE
T ss_pred CCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEE
Confidence 888888899888888 567777788888899998888874 33332 257888999999888653 4788999999
Q ss_pred cCCCCCcCCCccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhh
Q 038393 462 LGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFS 515 (618)
Q Consensus 462 l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~ 515 (618)
+++|+++.+|. ...+++|++|++++|++++..|..+..+++|+.+++++|++.
T Consensus 458 Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 458 ISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred CCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 99999988765 456889999999999999888888889999999999999864
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.3e-46 Score=418.28 Aligned_cols=447 Identities=24% Similarity=0.246 Sum_probs=312.5
Q ss_pred EEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCccccc----------CCcccccC-CccCCCCCCCCEEeccC
Q 038393 58 TALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFN----------INMFHGKI-PSTLSNCKRLRNISLSL 126 (618)
Q Consensus 58 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~----------~n~~~~~~-p~~l~~l~~L~~L~L~~ 126 (618)
...+.++++++. +|. -.++|++|||++|.+++..|..+.. .|...+.+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 456677888885 454 4579999999999997555544331 22222333 55666666666666666
Q ss_pred ccccccCCccccCCCCCcEEEeeccccccccCcc--cCCCCCCCEEecccCcCcccCC-ccccCCCCCCEEEeecccCcc
Q 038393 127 NDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEE--LGNLAELEELWLQNNFLTGTIP-SSIFNLSSLSILDLSVNNLTG 203 (618)
Q Consensus 127 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~ 203 (618)
|.+++..|+.|+++++|++|+|++|.+++.+|.. |..+++|++|++++|.+++..+ ..|+++++|++|++++|.+.+
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 6666666666666666666666666666544443 6666666666666666665443 356666666666666666654
Q ss_pred cCCCC-CCC--CCccEEEcccCcCcccCCccCCCCCC------CcEEeccCccCcccCchhhhhc---------------
Q 038393 204 TIPYA-GNL--FQLQWLDLSDNQLSGSFPSFKFKMPR------LQVLDLSVNGLSGELPANFCNN--------------- 259 (618)
Q Consensus 204 ~~~~~-~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~~~--------------- 259 (618)
..+.. ..+ ++|+.|+++.|.+.+..+..+..+++ |+.|++++|.+++..+..+...
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 43322 222 56666666666666655555444444 8889998887766555444321
Q ss_pred ----------------------CCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcC
Q 038393 260 ----------------------FPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQ 317 (618)
Q Consensus 260 ----------------------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 317 (618)
.++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 2578999999999988888888999999999999999988888889999999999999
Q ss_pred CCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCccccc
Q 038393 318 FNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNG 397 (618)
Q Consensus 318 ~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~ 397 (618)
+|.++.++. ..+..+++|++|++++|.++...+..+..++ +|++|++++|.+.+. ..+++|+.|++++|++..
T Consensus 323 ~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 323 YNLLGELYS-SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp SCCCSCCCS-CSCSSCTTCCEEECCSCCCCCCCSSCSCSCC-CCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC
T ss_pred CCCCCccCH-HHhcCCCCCCEEECCCCCCCccChhhhcCCC-CCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc
Confidence 999887754 6788889999999999999888888787776 899999999988753 225666677766666652
Q ss_pred ccCc----------------------cccccCCCceEEccccccccCCch-hhhcCCCCCeEEcCCCcce-----eccch
Q 038393 398 TIPI----------------------TLGKLQKLQLLSFEDNQLEGSIPN-DLCRLAALFQLDLGGNMLS-----GFIPA 449 (618)
Q Consensus 398 ~~~~----------------------~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-----~~~~~ 449 (618)
. |. .+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+.
T Consensus 396 l-~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 396 L-PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp C-CCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred c-cccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 2 21 133567777777777777654332 3445677777777777775 33345
Q ss_pred hhhcccCCCceecCCCCCcCC-CccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhhh
Q 038393 450 CFGNLTYLKKLNLGSNQLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELF 518 (618)
Q Consensus 450 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l~ 518 (618)
.|..+++|+.|++++|.+++. +..+..+++|+.|+|++|++++..|..+. ++|+.|++++|+++.+.
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN 542 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence 677778888888888888877 44466788888888888888876665554 67888888888876554
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-44 Score=393.55 Aligned_cols=430 Identities=20% Similarity=0.213 Sum_probs=370.4
Q ss_pred EEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccC
Q 038393 60 LNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGN 139 (618)
Q Consensus 60 L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 139 (618)
++.++.+++ .+|..+. +++++|++++|.++ +..+..|.++++|++|+|++|.+++..|..|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~ 74 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR--------------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCC--------------EECTTTTTTCSSCCEEECTTCCCCEECTTTTTT
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccC--------------ccChhHhhCCCCceEEECCCCcCCccCcccccC
Confidence 455566666 4555443 58999999999985 344567899999999999999999888899999
Q ss_pred CCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCccc--CCCCCCCCCccEE
Q 038393 140 VTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGT--IPYAGNLFQLQWL 217 (618)
Q Consensus 140 l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L 217 (618)
+++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+. +..++.+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred chhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 99999999999999988889999999999999999999976666799999999999999999862 3345789999999
Q ss_pred EcccCcCcccCCccCCCCCCC----cEEeccCccCcccCchhhhhcCCCCcEEEccCC----------------------
Q 038393 218 DLSDNQLSGSFPSFKFKMPRL----QVLDLSVNGLSGELPANFCNNFPFLEELYLSKN---------------------- 271 (618)
Q Consensus 218 ~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n---------------------- 271 (618)
++++|.+++..+..+..+++| +.|++++|.+++..+..+ . ..+|++|++++|
T Consensus 155 ~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~-~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l 232 (570)
T 2z63_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-K-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232 (570)
T ss_dssp ECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-T-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEE
T ss_pred eCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHh-c-cCcceeEecccccccccchhhhhcCccccceeee
Confidence 999999998888888888888 899999999996555444 3 236888888776
Q ss_pred ------------------------------------cccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEE
Q 038393 272 ------------------------------------MFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315 (618)
Q Consensus 272 ------------------------------------~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 315 (618)
.+.+..+..+..+++|++|++++|.+. .+|..+..+ +|+.|+
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~ 310 (570)
T 2z63_A 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLE 310 (570)
T ss_dssp EEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEE
T ss_pred ccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEe
Confidence 334455667788899999999999998 578888888 999999
Q ss_pred cCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCC--chhhhcccccceeeeCCc
Q 038393 316 LQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGI--PEEISNLTNLIAIYLGGN 393 (618)
Q Consensus 316 L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~n 393 (618)
+++|.+..+|. ..+++|++|++++|.+.+..+. ..+ ++|++|++++|.+.+.. +..+..+++|++|++++|
T Consensus 311 l~~n~~~~l~~----~~l~~L~~L~l~~n~~~~~~~~--~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 311 LVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSE--VDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp EESCBCSSCCB----CBCSSCCEEEEESCBSCCBCCC--CBC-TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred eccCcccccCc----ccccccCEEeCcCCcccccccc--ccC-CCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence 99999997773 4788999999999998877665 334 48999999999988654 778899999999999999
Q ss_pred ccccccCccccccCCCceEEccccccccCCc-hhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcC--C
Q 038393 394 KLNGTIPITLGKLQKLQLLSFEDNQLEGSIP-NDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTS--T 470 (618)
Q Consensus 394 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~ 470 (618)
.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++. .
T Consensus 384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 99876555 8999999999999999987665 578899999999999999999999999999999999999999973 5
Q ss_pred CccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhhh
Q 038393 471 SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELF 518 (618)
Q Consensus 471 ~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l~ 518 (618)
|..+..+++|++|++++|++++..|..+..+++|+.|++++|+++++.
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC
Confidence 888889999999999999999999999999999999999999988764
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-45 Score=395.14 Aligned_cols=432 Identities=20% Similarity=0.188 Sum_probs=292.8
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCC
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIP 134 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 134 (618)
.+++.|++++|.+++..|..|.++++|++|+|++|+++ +..|..|+++++|++|+|++|.++ .+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 85 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ--------------YLDISVFKFNQELEYLDLSHNKLV-KIS 85 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC--------------EEEGGGGTTCTTCCEEECCSSCCC-EEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccC--------------CcChHHhhcccCCCEEecCCCcee-ecC
Confidence 34555555555555544455555555555555555552 223444555555555555555555 233
Q ss_pred ccccCCCCCcEEEeecccccc-ccCcccCCCCCCCEEecccCcCcccCCccccCCCCC--CEEEeecccC--cccCCCC-
Q 038393 135 KEIGNVTKLIGLYLRGNQLQG-EIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSL--SILDLSVNNL--TGTIPYA- 208 (618)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~i~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~- 208 (618)
.. .+++|++|+|++|.+++ .+|..|+.+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..+..
T Consensus 86 ~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 86 CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc
Confidence 33 45555555555555554 244555555555555555555543 234444444 5555555555 2222211
Q ss_pred CCCC-CccEEEcccCcCcccCCc-cCCCCCCCcEEeccCcc-------CcccCchhhhhcCCCCcEEEccCCcccccCCc
Q 038393 209 GNLF-QLQWLDLSDNQLSGSFPS-FKFKMPRLQVLDLSVNG-------LSGELPANFCNNFPFLEELYLSKNMFYGEIPS 279 (618)
Q Consensus 209 ~~l~-~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 279 (618)
..+. +...+++++|.+.+.++. .+..+++|+.|++++|. +.+.++ .+ ..+++|+.|++++|.+.+..+.
T Consensus 161 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KL-QTNPKLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GG-GGCTTCCEEEEEEEEEEHHHHH
T ss_pred cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hh-ccccchhhccccccccCHHHHH
Confidence 1111 122344555554443332 34457778888888876 554444 33 3478888888888877643222
Q ss_pred cC---CCCCCCcEEEeecccccccCCccc-----cCCCCCCEEEcCCCCCccCccccccCCC---CCCCEEEcccccCcc
Q 038393 280 DL---ANCSYLRILVLQFNNFSGAIPKEI-----GNLTKLEKLDLQFNRLRELSFLSSLSNC---KYLKYFSLSNNLLDG 348 (618)
Q Consensus 280 ~l---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~l~~~---~~L~~L~ls~n~l~~ 348 (618)
.+ ...++|++|++++|.+.+.+|..+ +.+++|+.++++.|.+ .+|. ..+..+ .+|+.|++++|.+..
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~-~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ-SYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT-HHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch-hhhhcccccCceeEEEcCCCcccc
Confidence 11 124589999999999988888887 8889999999999888 5552 222222 679999999998876
Q ss_pred ccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCccccc--ccCccccccCCCceEEccccccccCCch-
Q 038393 349 ILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNG--TIPITLGKLQKLQLLSFEDNQLEGSIPN- 425 (618)
Q Consensus 349 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 425 (618)
... ...+ +++++|++++|.+.+..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++.+|.
T Consensus 317 ~~~--~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 317 MLC--PSKI-SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCC--CSSC-CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC
T ss_pred ccc--hhhC-CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc
Confidence 531 1233 389999999999999888899999999999999999986 4567788999999999999999874554
Q ss_pred hhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCcceecCCCCCcccccce
Q 038393 426 DLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLV 505 (618)
Q Consensus 426 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 505 (618)
.+..+++|+.|++++|++++..|..+. ++|+.|++++|+++.+|..++.+++|++|++++|+++...+..+..+++|+
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 477889999999999999877766654 789999999999998888888999999999999999954333488899999
Q ss_pred eeccccchhh
Q 038393 506 QIDLSMNNFS 515 (618)
Q Consensus 506 ~l~l~~n~l~ 515 (618)
.+++++|+++
T Consensus 472 ~L~l~~N~~~ 481 (520)
T 2z7x_B 472 KIWLHTNPWD 481 (520)
T ss_dssp EEECCSSCBC
T ss_pred EEECcCCCCc
Confidence 9999999875
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.5e-45 Score=399.23 Aligned_cols=413 Identities=18% Similarity=0.226 Sum_probs=343.6
Q ss_pred CCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCcccc------c---------------------
Q 038393 79 SSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFS------G--------------------- 131 (618)
Q Consensus 79 ~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~------~--------------------- 131 (618)
.+++.|+|++|.+ .|.+|.+++++++|++|+|++|.+. +
T Consensus 81 ~~V~~L~L~~~~l--------------~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~ 146 (636)
T 4eco_A 81 GRVTGLSLEGFGA--------------SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146 (636)
T ss_dssp CCEEEEECTTSCC--------------EEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHH
T ss_pred CCEEEEEecCccc--------------CCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHH
Confidence 6999999999998 4677788999999999999999762 1
Q ss_pred ------cCCcccc-------------------CCCCCcEEEe--eccccccccCcccCCCCCCCEEecccCcCccc----
Q 038393 132 ------TIPKEIG-------------------NVTKLIGLYL--RGNQLQGEIPEELGNLAELEELWLQNNFLTGT---- 180 (618)
Q Consensus 132 ------~~~~~~~-------------------~l~~L~~L~L--~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~---- 180 (618)
.+|..+. ....++.+.+ .+|++++ +|..|+++++|++|+|++|.+++.
T Consensus 147 ~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~ 225 (636)
T 4eco_A 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE 225 (636)
T ss_dssp HHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred HhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccc
Confidence 1111111 0111222222 2578887 899999999999999999999985
Q ss_pred -------------CCcccc--CCCCCCEEEeecccCcccCCC-CCCCCCccEEEcccCc-Ccc-cCCccCCCC------C
Q 038393 181 -------------IPSSIF--NLSSLSILDLSVNNLTGTIPY-AGNLFQLQWLDLSDNQ-LSG-SFPSFKFKM------P 236 (618)
Q Consensus 181 -------------~~~~l~--~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~ 236 (618)
+|..++ ++++|++|++++|.+.+.+|. ++.+++|++|++++|+ +++ .+|..+..+ +
T Consensus 226 ~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305 (636)
T ss_dssp SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGG
T ss_pred cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCC
Confidence 899999 999999999999998887765 4889999999999998 888 788877765 9
Q ss_pred CCcEEeccCccCcccCch--hhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCC-CCE
Q 038393 237 RLQVLDLSVNGLSGELPA--NFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTK-LEK 313 (618)
Q Consensus 237 ~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 313 (618)
+|++|++++|+++ .+|. .+ ..+++|++|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |+.
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~ 381 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVEN 381 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCE
T ss_pred CCCEEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcE
Confidence 9999999999999 8887 55 459999999999999998888 8999999999999999998 78888999999 999
Q ss_pred EEcCCCCCccCccccccCCC--CCCCEEEcccccCccccchhhh-------hccccccEEEeeecccccCCchhhhcccc
Q 038393 314 LDLQFNRLRELSFLSSLSNC--KYLKYFSLSNNLLDGILPRAIG-------NLSQSIEEFWIVSCNISGGIPEEISNLTN 384 (618)
Q Consensus 314 L~L~~n~l~~~~~~~~l~~~--~~L~~L~ls~n~l~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 384 (618)
|++++|.++.+| ..+..+ ++|++|++++|.+++..|..+. ... ++++|++++|.+....+..+..+++
T Consensus 382 L~Ls~N~l~~lp--~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~~~l~~ 458 (636)
T 4eco_A 382 LSFAHNKLKYIP--NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSP 458 (636)
T ss_dssp EECCSSCCSSCC--SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC-CEEEEECCSSCCCSCCTHHHHTTCC
T ss_pred EEccCCcCcccc--hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC-CCCEEECcCCccCcCCHHHHccCCC
Confidence 999999999887 445444 4899999999999998888777 444 8999999999999554445667999
Q ss_pred cceeeeCCcccccccCccccccC-------CCceEEccccccccCCchhhh--cCCCCCeEEcCCCcceeccchhhhccc
Q 038393 385 LIAIYLGGNKLNGTIPITLGKLQ-------KLQLLSFEDNQLEGSIPNDLC--RLAALFQLDLGGNMLSGFIPACFGNLT 455 (618)
Q Consensus 385 L~~L~L~~n~i~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 455 (618)
|+.|++++|++....+..+.... +|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..++
T Consensus 459 L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~ 536 (636)
T 4eco_A 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS 536 (636)
T ss_dssp CSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS
T ss_pred CCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC
Confidence 99999999999944444444333 8999999999999 6777776 89999999999999997 788889999
Q ss_pred CCCceecC------CCCCcCC-CccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhhh
Q 038393 456 YLKKLNLG------SNQLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELF 518 (618)
Q Consensus 456 ~L~~L~l~------~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l~ 518 (618)
+|+.|+++ +|++.+. |..+..+++|++|++++|++ +.+|..+. +.|+.|++++|++..+.
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 99999995 4666554 78888999999999999999 57787765 79999999999887653
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.6e-44 Score=385.66 Aligned_cols=429 Identities=20% Similarity=0.185 Sum_probs=300.3
Q ss_pred EEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccC
Q 038393 60 LNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGN 139 (618)
Q Consensus 60 L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 139 (618)
.+.++++++ .+|+.+. ++|++|++++|.++ +..|..+.++++|++|++++|.+++..|..|++
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 72 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT--------------YIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC--------------EECSSTTSSCTTCCEEECTTSCCCEECTTTTTT
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccC--------------ccChhhhhcCCcccEEECCCCCcCccChhhccc
Confidence 789999998 5566554 79999999999984 345677899999999999999999988899999
Q ss_pred CCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCccc-CCccccCCCCCCEEEeecccCcccCC--CCCCCCCccE
Q 038393 140 VTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGT-IPSSIFNLSSLSILDLSVNNLTGTIP--YAGNLFQLQW 216 (618)
Q Consensus 140 l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~ 216 (618)
+++|++|+|++|.+++..|..|+.+++|++|++++|.+++. .|..++++++|++|++++|.+.+.++ .+..+++|++
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 99999999999999987777799999999999999999863 56789999999999999998444443 4588999999
Q ss_pred EEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccC--C-ccCCCCCCCcEEEee
Q 038393 217 LDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEI--P-SDLANCSYLRILVLQ 293 (618)
Q Consensus 217 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~l~~l~~L~~L~l~ 293 (618)
|++++|.+++..|..+..+++|++|+++.|.+. .+|..+...+++|++|++++|.+++.. + .....+++|+.|+++
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred eeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 999999999999999999999999999999987 777777777999999999999998642 1 223457888999999
Q ss_pred cccccccCC----ccccCCCCCCEEEcCCCCCccCccc-----cccCCCC-----------------------------C
Q 038393 294 FNNFSGAIP----KEIGNLTKLEKLDLQFNRLRELSFL-----SSLSNCK-----------------------------Y 335 (618)
Q Consensus 294 ~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~-----~~l~~~~-----------------------------~ 335 (618)
+|.+.+..+ ..+..+++|+.+++++|.+..++.. ..+..++ +
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence 888875433 2335567777777777766543211 1123334 4
Q ss_pred CCEEEcccccCccccchhh-hhccccccEEEeeecccccCCch---hhhcccccceeeeCCcccccccC--ccccccCCC
Q 038393 336 LKYFSLSNNLLDGILPRAI-GNLSQSIEEFWIVSCNISGGIPE---EISNLTNLIAIYLGGNKLNGTIP--ITLGKLQKL 409 (618)
Q Consensus 336 L~~L~ls~n~l~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~--~~~~~l~~L 409 (618)
|+.|++++|.++. +|..+ ..++ +|++|++++|.+.+.+|. .++.+++|+.|++++|++.+..+ ..+..+++|
T Consensus 312 L~~L~l~~n~l~~-ip~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 312 VKRITVENSKVFL-VPCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp CCEEEEESSCCCC-CCHHHHHHCT-TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ceEEEeccCcccc-CCHHHHhcCc-cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 5555555555542 23333 2333 555566655555554432 24455555666666655554322 334555556
Q ss_pred ceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCc
Q 038393 410 QLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNS 489 (618)
Q Consensus 410 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~ 489 (618)
++|++++|+++ .+|..+..+++|++|++++|+++... ..+ .++|+.|++++|++++.+ ..++.|++|++++|+
T Consensus 390 ~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~ 462 (549)
T 2z81_A 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNK 462 (549)
T ss_dssp CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC
T ss_pred CEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCc
Confidence 66666666555 34445555555666666666555322 111 135566666666555542 345666666666666
Q ss_pred ceecCCCCCcccccceeeccccchhhhh
Q 038393 490 FTGSLPLGIGNLKVLVQIDLSMNNFSEL 517 (618)
Q Consensus 490 l~~~~p~~l~~l~~L~~l~l~~n~l~~l 517 (618)
++ .+|. ...+++|+.|++++|+++.+
T Consensus 463 l~-~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 463 LK-TLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp CS-SCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred cC-cCCC-cccCccCCEEecCCCccCCc
Confidence 66 3443 34566666666666666554
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.9e-44 Score=394.89 Aligned_cols=412 Identities=18% Similarity=0.211 Sum_probs=342.0
Q ss_pred CCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEec-cCccccccCCccc--------------------
Q 038393 79 SSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISL-SLNDFSGTIPKEI-------------------- 137 (618)
Q Consensus 79 ~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L-~~n~l~~~~~~~~-------------------- 137 (618)
.+++.|+|++|.+ .|.+|.+++++++|++|+| ++|.++|..|-..
T Consensus 323 ~~V~~L~Ls~~~L--------------~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~ 388 (876)
T 4ecn_A 323 GRVTGLSLAGFGA--------------KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK 388 (876)
T ss_dssp SCEEEEECTTTCC--------------EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHH
T ss_pred CCEEEEECccCCC--------------CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhh
Confidence 5789999999998 4677788999999999999 8888876633210
Q ss_pred -------------------------------cCCCCCcEEEee--ccccccccCcccCCCCCCCEEecccCcCcc-----
Q 038393 138 -------------------------------GNVTKLIGLYLR--GNQLQGEIPEELGNLAELEELWLQNNFLTG----- 179 (618)
Q Consensus 138 -------------------------------~~l~~L~~L~L~--~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~----- 179 (618)
.....++.+.+. .|.+++ +|..|+++++|++|+|++|.+++
T Consensus 389 ~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~ 467 (876)
T 4ecn_A 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV 467 (876)
T ss_dssp HHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred hhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccc
Confidence 111223333333 378887 89999999999999999999998
Q ss_pred ------------cCCcccc--CCCCCCEEEeecccCcccCCC-CCCCCCccEEEcccCc-Ccc-cCCccCC-------CC
Q 038393 180 ------------TIPSSIF--NLSSLSILDLSVNNLTGTIPY-AGNLFQLQWLDLSDNQ-LSG-SFPSFKF-------KM 235 (618)
Q Consensus 180 ------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~-l~~-~~~~~~~-------~l 235 (618)
.+|..++ ++++|++|++++|.+.+.+|. +..+++|++|++++|+ +++ .+|..+. .+
T Consensus 468 ~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l 547 (876)
T 4ecn_A 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547 (876)
T ss_dssp SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred cccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence 3899988 999999999999998887775 4889999999999998 887 6776544 45
Q ss_pred CCCcEEeccCccCcccCch--hhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCC-CC
Q 038393 236 PRLQVLDLSVNGLSGELPA--NFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTK-LE 312 (618)
Q Consensus 236 ~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~ 312 (618)
++|+.|++++|.++ .+|. .+ ..+++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+
T Consensus 548 ~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622 (876)
T ss_dssp TTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred CCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence 59999999999999 8887 55 45999999999999998 777 8999999999999999999 78888999999 99
Q ss_pred EEEcCCCCCccCccccccCCC--CCCCEEEcccccCccccchhh---hhc-cccccEEEeeecccccCCchhhhcccccc
Q 038393 313 KLDLQFNRLRELSFLSSLSNC--KYLKYFSLSNNLLDGILPRAI---GNL-SQSIEEFWIVSCNISGGIPEEISNLTNLI 386 (618)
Q Consensus 313 ~L~L~~n~l~~~~~~~~l~~~--~~L~~L~ls~n~l~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 386 (618)
.|++++|.++.+| ..+..+ ++|+.|++++|++++.+|... ..+ ..+|+.|++++|.+....+..+..+++|+
T Consensus 623 ~L~Ls~N~L~~lp--~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 623 GLGFSHNKLKYIP--NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp EEECCSSCCCSCC--SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred EEECcCCCCCcCc--hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 9999999999887 455554 459999999999998765322 211 13799999999999944333445899999
Q ss_pred eeeeCCcccccccCcc-ccc-------cCCCceEEccccccccCCchhhh--cCCCCCeEEcCCCcceeccchhhhcccC
Q 038393 387 AIYLGGNKLNGTIPIT-LGK-------LQKLQLLSFEDNQLEGSIPNDLC--RLAALFQLDLGGNMLSGFIPACFGNLTY 456 (618)
Q Consensus 387 ~L~L~~n~i~~~~~~~-~~~-------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 456 (618)
.|++++|++. .+|.. +.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++
T Consensus 701 ~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~ 777 (876)
T 4ecn_A 701 TIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777 (876)
T ss_dssp EEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred EEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence 9999999999 44443 332 338999999999999 6788876 89999999999999997 6888899999
Q ss_pred CCceecCC------CCCcCC-CccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhhh
Q 038393 457 LKKLNLGS------NQLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELF 518 (618)
Q Consensus 457 L~~L~l~~------n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l~ 518 (618)
|+.|++++ |.+.+. |..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++.++.
T Consensus 778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 99999987 666554 77888999999999999999 68888765 69999999999987664
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.5e-44 Score=382.32 Aligned_cols=409 Identities=20% Similarity=0.176 Sum_probs=349.0
Q ss_pred CCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccc-c
Q 038393 54 THRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSG-T 132 (618)
Q Consensus 54 ~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~-~ 132 (618)
..+++.|+|++|.+++..|..|+++++|++|+|++|+++ .+|.. .+++|++|+|++|.+++ .
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------------~lp~~--~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV---------------KISCH--PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC---------------EEECC--CCCCCSEEECCSSCCSSCC
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee---------------ecCcc--ccCCccEEeccCCcccccc
Confidence 468999999999999998999999999999999999985 34544 79999999999999987 4
Q ss_pred CCccccCCCCCcEEEeeccccccccCcccCCCCCC--CEEecccCcC--cccCCccccCCC-CCCEEEeecccCcccCCC
Q 038393 133 IPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAEL--EELWLQNNFL--TGTIPSSIFNLS-SLSILDLSVNNLTGTIPY 207 (618)
Q Consensus 133 ~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~ 207 (618)
+|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+..+.
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~ 183 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCC
T ss_pred chhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhh
Confidence 78999999999999999999986 457777888 9999999999 778888888776 344667888888765554
Q ss_pred C--CCCCCccEEEcccCc-------CcccCCccCCCCCCCcEEeccCccCcccCchhhhh--cCCCCcEEEccCCccccc
Q 038393 208 A--GNLFQLQWLDLSDNQ-------LSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCN--NFPFLEELYLSKNMFYGE 276 (618)
Q Consensus 208 ~--~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~ 276 (618)
. ..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+++..+..+.. ..++|++|++++|.+.+.
T Consensus 184 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 3 679999999999997 555555 6788999999999999987644433322 146899999999999988
Q ss_pred CCccC-----CCCCCCcEEEeecccccccCC-ccccCC---CCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCc
Q 038393 277 IPSDL-----ANCSYLRILVLQFNNFSGAIP-KEIGNL---TKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLD 347 (618)
Q Consensus 277 ~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~ 347 (618)
+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+...+. ...+++|++|++++|+++
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCC
T ss_pred cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc---hhhCCcccEEEeECCccC
Confidence 99888 8999999999999999 445 444444 689999999999887652 368899999999999999
Q ss_pred cccchhhhhccccccEEEeeeccccc--CCchhhhcccccceeeeCCcccccccCc-cccccCCCceEEccccccccCCc
Q 038393 348 GILPRAIGNLSQSIEEFWIVSCNISG--GIPEEISNLTNLIAIYLGGNKLNGTIPI-TLGKLQKLQLLSFEDNQLEGSIP 424 (618)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 424 (618)
+..|..+..++ +|++|++++|.+.+ .+|..+..+++|+.|++++|++.+.+|. .+..+++|++|++++|++++..|
T Consensus 338 ~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 338 DTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp TTTTTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred hhhhhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 98898888887 89999999999987 5667899999999999999999984554 58889999999999999987776
Q ss_pred hhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCcc-ccccccCcEEeCcCCccee
Q 038393 425 NDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSST-LWNIKYILYLNLSSNSFTG 492 (618)
Q Consensus 425 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~ls~n~l~~ 492 (618)
..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++.++.. +..+++|++|++++|++++
T Consensus 417 ~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 417 RCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 6553 79999999999999 5666667999999999999999998765 7789999999999999874
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-42 Score=374.55 Aligned_cols=429 Identities=21% Similarity=0.132 Sum_probs=323.4
Q ss_pred EEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcc
Q 038393 57 VTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKE 136 (618)
Q Consensus 57 v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 136 (618)
.+.++++++++++ +|..+. ++|++|++++|.+. +..|..|.++++|++|+|++|.+++..|..
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~--------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS--------------ELRMPDISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC--------------CCCGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc--------------ccChhhhccCCCccEEECCCCCCCcCCHHH
Confidence 3789999999985 666554 79999999999885 344567889999999999999999888999
Q ss_pred ccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCccc-CCccccCCCCCCEEEeecccCcccCCCCCCCCCc-
Q 038393 137 IGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGT-IPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQL- 214 (618)
Q Consensus 137 ~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L- 214 (618)
|+++++|++|+|++|.++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+.+ ..+..+++|
T Consensus 96 ~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~ 170 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLH 170 (562)
T ss_dssp TTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSC
T ss_pred hCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--Cchhhhhhce
Confidence 999999999999999998 56665 789999999999999863 46789999999999999999875 233445555
Q ss_pred -cEEEcccCcC--cccCCccCCCCC-CCcEEeccCccCcccCchhhhhc----------------------------CCC
Q 038393 215 -QWLDLSDNQL--SGSFPSFKFKMP-RLQVLDLSVNGLSGELPANFCNN----------------------------FPF 262 (618)
Q Consensus 215 -~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~----------------------------l~~ 262 (618)
++|++++|.+ ++..|..+..+. ..-.++++.|.+.+.++...... ++.
T Consensus 171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 9999999988 666666655433 11133444444444333333333 444
Q ss_pred CcEEEccCCcccccC----CccCCCCCCCcEEEeecccccccCCccc-----cCCCCCCEEEcCCCCCccCccc--cccC
Q 038393 263 LEELYLSKNMFYGEI----PSDLANCSYLRILVLQFNNFSGAIPKEI-----GNLTKLEKLDLQFNRLRELSFL--SSLS 331 (618)
Q Consensus 263 L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~--~~l~ 331 (618)
|+.|+++++.+.+.. +.. ...++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ .+|.. ..+.
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~ 328 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVF 328 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHH
T ss_pred ceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhh
Confidence 555555444433211 111 123478888888888887777766 5566666666666665 33310 0111
Q ss_pred CCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccc--cCccccccCCC
Q 038393 332 NCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGT--IPITLGKLQKL 409 (618)
Q Consensus 332 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L 409 (618)
...+|++|++++|.+..... ...+ +++++|++++|.+.+..|..+..+++|+.|++++|++.+. .|..+..+++|
T Consensus 329 ~~~~L~~L~l~~n~~~~~~~--~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 329 AEMNIKMLSISDTPFIHMVC--PPSP-SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405 (562)
T ss_dssp HTCCCSEEEEESSCCCCCCC--CSSC-CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC
T ss_pred ccCcceEEEccCCCcccccC--ccCC-CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC
Confidence 22579999999998865432 1233 4899999999999998899999999999999999999863 35678899999
Q ss_pred ceEEccccccccCCc-hhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCC
Q 038393 410 QLLSFEDNQLEGSIP-NDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSN 488 (618)
Q Consensus 410 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n 488 (618)
++|++++|++++.+| ..+..+++|+.|++++|++++..|..+. ++|+.|++++|+++.+|..++.++.|++|++++|
T Consensus 406 ~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred CEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence 999999999997454 4578899999999999999876665554 6899999999999998888889999999999999
Q ss_pred cceecCCCC-Ccccccceeeccccchhh
Q 038393 489 SFTGSLPLG-IGNLKVLVQIDLSMNNFS 515 (618)
Q Consensus 489 ~l~~~~p~~-l~~l~~L~~l~l~~n~l~ 515 (618)
+++. +|.. +..++.|+.+++++|++.
T Consensus 484 ~l~~-l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 484 QLKS-VPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCC-CCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCC-CCHHHHhcCCCCCEEEecCCCcC
Confidence 9995 5554 889999999999999875
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.6e-42 Score=345.52 Aligned_cols=292 Identities=33% Similarity=0.534 Sum_probs=255.8
Q ss_pred CCCHHHHHHHHHhhccCCCCCCCcccCCCCCCCCCcc--eeeeeeCCCC--CcEEEEEcCCCCCcc--cCCccccCCCCC
Q 038393 8 TSITTDQQALLSLKGHVTEDPANFLARNWNTSSSVCN--WTGVTCDVRT--HRVTALNISGLNLTG--TIPSELGNLSSL 81 (618)
Q Consensus 8 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~~--~~~~~~~~l~~L 81 (618)
.|.++|++||++||..+ .+|. .+.+ |..+++||. |.||.|+... ++|+.|+|+++++++ .+|+.|+++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~-~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDL-GNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHT-TCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhc-CCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 58899999999999999 6665 6666 988889998 9999998654 799999999999999 899999999999
Q ss_pred CEEeCCC-CCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcc
Q 038393 82 QTLDLSF-NWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEE 160 (618)
Q Consensus 82 ~~L~Ls~-n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~ 160 (618)
++|++++ |.+ .+.+|..++++++|++|+|++|.+++.+|..|.++++|++|++++|.+++.+|..
T Consensus 79 ~~L~L~~~n~l--------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 79 NFLYIGGINNL--------------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp SEEEEEEETTE--------------ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred CeeeCCCCCcc--------------cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 9999995 877 4567778899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEecccCcCcccCCccccCCC-CCCEEEeecccCcccCCCC-CCCCCccEEEcccCcCcccCCccCCCCCCC
Q 038393 161 LGNLAELEELWLQNNFLTGTIPSSIFNLS-SLSILDLSVNNLTGTIPYA-GNLFQLQWLDLSDNQLSGSFPSFKFKMPRL 238 (618)
Q Consensus 161 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 238 (618)
|..+++|++|++++|.+++.+|..++.++ +|++|++++|.+.+..+.. ..+. |++|++++|.+++..|..+..+++|
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence 99999999999999999999999999998 9999999999998766654 4454 9999999999988888888889999
Q ss_pred cEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCC
Q 038393 239 QVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQF 318 (618)
Q Consensus 239 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 318 (618)
+.|++++|.+++.++. + ..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++
T Consensus 224 ~~L~L~~N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGK-V-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp SEEECCSSEECCBGGG-C-CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred CEEECCCCceeeecCc-c-cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcC
Confidence 9999999988866554 3 44788888888888888888888888888888888888888877765 6777777777777
Q ss_pred CC
Q 038393 319 NR 320 (618)
Q Consensus 319 n~ 320 (618)
|.
T Consensus 301 N~ 302 (313)
T 1ogq_A 301 NK 302 (313)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3e-40 Score=363.74 Aligned_cols=439 Identities=23% Similarity=0.175 Sum_probs=333.8
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCC
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIP 134 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 134 (618)
..++.|+|++|.|++..+.+|.++++|++|+|++|+|+ +..|.+|.++++|++|+|++|++++..+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~--------------~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ--------------TIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC--------------CcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 47899999999999888889999999999999999985 3345578999999999999999998777
Q ss_pred ccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCccc-CCccccCCCCCCEEEeecccCcccCCCC-CCCC
Q 038393 135 KEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGT-IPSSIFNLSSLSILDLSVNNLTGTIPYA-GNLF 212 (618)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~ 212 (618)
..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++. .|..++.+++|++|++++|++++..+.. ..+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 8899999999999999999977777899999999999999999753 5778889999999999999988765432 1121
Q ss_pred ----CccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhh--------------------------------
Q 038393 213 ----QLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANF-------------------------------- 256 (618)
Q Consensus 213 ----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------------- 256 (618)
....++++.|.++...+..+ ....++.+++..|.....++...
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 23456666666654333222 22223333333332111000000
Q ss_pred -----------------------------------------------hhcCCCCcEEEccCCcccccCCccCCCCCCCcE
Q 038393 257 -----------------------------------------------CNNFPFLEELYLSKNMFYGEIPSDLANCSYLRI 289 (618)
Q Consensus 257 -----------------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 289 (618)
+.....++.|++.+|.+....+ ..++.|+.
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~ 353 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKR 353 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhhh
Confidence 0112334444444444432221 12344555
Q ss_pred EEeecccccccCCccccCCCCCCEEEcCCCCCccCcc-ccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeee
Q 038393 290 LVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSF-LSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVS 368 (618)
Q Consensus 290 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~ 368 (618)
+++..|.+... .....+++|+.++++.|.+..... ......+.+|++++++.+.+....+ .+..+. +++.+++..
T Consensus 354 l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~-~L~~l~l~~ 429 (635)
T 4g8a_A 354 LTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLE-QLEHLDFQH 429 (635)
T ss_dssp EEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCT-TCCEEECTT
T ss_pred cccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-cccccc-cccchhhhh
Confidence 55555544322 224467899999999999875421 1344567899999999998776543 444554 899999998
Q ss_pred cccccCCc-hhhhcccccceeeeCCcccccccCccccccCCCceEEcccccc-ccCCchhhhcCCCCCeEEcCCCcceec
Q 038393 369 CNISGGIP-EEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQL-EGSIPNDLCRLAALFQLDLGGNMLSGF 446 (618)
Q Consensus 369 ~~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 446 (618)
++.....+ ..+..+++++.++++.|.+.+..+..+..+++|+.|++++|.+ .+..|..|..+++|+.|+|++|+++++
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 87766544 4578899999999999999999999999999999999999975 446788899999999999999999999
Q ss_pred cchhhhcccCCCceecCCCCCcCC-CccccccccCcEEeCcCCcceecCCCCCccc-ccceeeccccchhh
Q 038393 447 IPACFGNLTYLKKLNLGSNQLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNL-KVLVQIDLSMNNFS 515 (618)
Q Consensus 447 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~l~l~~n~l~ 515 (618)
.|..|.++++|++|++++|+++++ +..+..+++|++|+|++|++++..|..+..+ ++|+.|++++|++.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999999999999999998 5567789999999999999999999999888 68999999999874
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-40 Score=350.40 Aligned_cols=368 Identities=22% Similarity=0.243 Sum_probs=276.7
Q ss_pred Ccceee--eeeCCC--------CCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCc
Q 038393 42 VCNWTG--VTCDVR--------THRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPS 111 (618)
Q Consensus 42 ~c~w~g--v~c~~~--------~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~ 111 (618)
.|.|.+ |.|... ..+++.|+|++|.+++..|..|+++++|++|++++|.+.+.+ .|.
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i-------------~~~ 73 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI-------------RNN 73 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE-------------CTT
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceE-------------Ccc
Confidence 355554 666532 257999999999999988999999999999999999885322 245
Q ss_pred cCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcc--cCCCCCCCEEecccCcCcccCCcc-ccCC
Q 038393 112 TLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEE--LGNLAELEELWLQNNFLTGTIPSS-IFNL 188 (618)
Q Consensus 112 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~~-l~~l 188 (618)
.|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|.. |..+++|++|++++|.+++..|.. +.++
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 6888999999999999999888999999999999999999998755555 899999999999999999887776 8899
Q ss_pred CCCCEEEeecccCcccCCCC-CCC--CCccEEEcccCcCcccCCcc--------CCCCCCCcEEeccCccCcccCchhhh
Q 038393 189 SSLSILDLSVNNLTGTIPYA-GNL--FQLQWLDLSDNQLSGSFPSF--------KFKMPRLQVLDLSVNGLSGELPANFC 257 (618)
Q Consensus 189 ~~L~~L~l~~n~l~~~~~~~-~~l--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~ 257 (618)
++|++|++++|.+.+..+.. ..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+.
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 99999999999998766544 333 68999999999988655443 33568899999999999888777765
Q ss_pred hc--CCCCcEEEccCCcccccCCc----------cCC--CCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCcc
Q 038393 258 NN--FPFLEELYLSKNMFYGEIPS----------DLA--NCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRE 323 (618)
Q Consensus 258 ~~--l~~L~~L~Ls~n~l~~~~~~----------~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 323 (618)
.. .++|+.|++++|.+.+.... .+. ..++|++|++++|.+.+..|..++.+++|+.|++++|.++.
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 53 37899999998865432111 111 12355555555555555555555555555555555555554
Q ss_pred CccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccc
Q 038393 324 LSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITL 403 (618)
Q Consensus 324 ~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 403 (618)
++. ..+..+++|++|++++|. +.+..+..+..+++|++|++++|++.+..|..+
T Consensus 314 ~~~-~~~~~l~~L~~L~Ls~N~-------------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 314 IDD-NAFWGLTHLLKLNLSQNF-------------------------LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp ECT-TTTTTCTTCCEEECCSSC-------------------------CCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cCh-hHhcCcccCCEEECCCCc-------------------------cCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 432 334444555555555554 444445566777888888899888888888888
Q ss_pred cccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccc
Q 038393 404 GKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIP 448 (618)
Q Consensus 404 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 448 (618)
..+++|++|++++|++++..+..+..+++|+.|++++|+++...|
T Consensus 368 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 888999999999999887777778888999999999999887655
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.4e-40 Score=349.09 Aligned_cols=387 Identities=22% Similarity=0.188 Sum_probs=253.9
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccC-Cccc
Q 038393 59 ALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTI-PKEI 137 (618)
Q Consensus 59 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~ 137 (618)
.++.++++++ .+|. +. ++|++|+|++|.+. +..|..++++++|++|++++|.+.+.+ +..|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~--------------~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~ 75 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIA--------------ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCC--------------EECTTTTSSCTTCCEEECCCCSTTCEECTTTT
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccC--------------cCChhHhccCccccEEECcCCcccceECcccc
Confidence 4677788877 4454 33 78899999888884 345667888888888888888886444 5678
Q ss_pred cCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCcc--ccCCCCCCEEEeecccCcccCCC--CCCCCC
Q 038393 138 GNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSS--IFNLSSLSILDLSVNNLTGTIPY--AGNLFQ 213 (618)
Q Consensus 138 ~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~--~~~l~~ 213 (618)
.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+. +..+++
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 88888888888888888777888888888888888888887644444 77788888888888887766554 356677
Q ss_pred ccEEEcccCcCcccCCccCCCC--CCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEE
Q 038393 214 LQWLDLSDNQLSGSFPSFKFKM--PRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILV 291 (618)
Q Consensus 214 L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 291 (618)
|++|++++|.+++..+..+..+ .+|+.|++++|.+.+..+..+.. .....+..+++|++|+
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~~~~~~~L~~L~ 218 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------EKCGNPFKNTSITTLD 218 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------HHHCCTTTTCEEEEEE
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc-----------------cccccccccceeeeEe
Confidence 7777777777766666555443 45666666666665322111100 0000122334555555
Q ss_pred eecccccccCCccccCC---CCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhc-cccccEEEee
Q 038393 292 LQFNNFSGAIPKEIGNL---TKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNL-SQSIEEFWIV 367 (618)
Q Consensus 292 l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~-~~~L~~L~l~ 367 (618)
+++|.+.+..|..+... ++|+.|++++|.+..... ..+.+.+..+..+..+ ..++++++++
T Consensus 219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred cCCCcccccchhhhhccccccceeeEeecccccccccc---------------chhhhccCcccccccccccCceEEEec
Confidence 55555544444433222 455555555554332110 0011111111111111 0245555555
Q ss_pred ecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceecc
Q 038393 368 SCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFI 447 (618)
Q Consensus 368 ~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 447 (618)
+|.+.+..|..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..
T Consensus 284 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 55555555666777778888888888888777777788888888888888887777777888888888888888888777
Q ss_pred chhhhcccCCCceecCCCCCcCCCc-cccccccCcEEeCcCCcceecCC
Q 038393 448 PACFGNLTYLKKLNLGSNQLTSTSS-TLWNIKYILYLNLSSNSFTGSLP 495 (618)
Q Consensus 448 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~ls~n~l~~~~p 495 (618)
|..|..+++|+.|++++|+++..+. .+..+++|++|++++|++++..|
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7788888888888888888887744 44567788888888888876544
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.8e-41 Score=361.45 Aligned_cols=410 Identities=19% Similarity=0.183 Sum_probs=321.1
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCC
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIP 134 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 134 (618)
.+++.|++++|.+++..+..|+++++|++|+|++|.++ +..|..|.++++|++|+|++|.++ .+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~--------------~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR--------------SLDFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC--------------EECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC--------------cCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 68999999999999888889999999999999999985 345677899999999999999998 566
Q ss_pred ccccCCCCCcEEEeecccccc-ccCcccCCCCCCCEEecccCcCcccCCccccCCCCC--CEEEeecccC--cccCCCC-
Q 038393 135 KEIGNVTKLIGLYLRGNQLQG-EIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSL--SILDLSVNNL--TGTIPYA- 208 (618)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~i~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~- 208 (618)
.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ .+..+..
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 55 89999999999999986 3468999999999999999999863 45555666 9999999988 5443322
Q ss_pred --------------------------CCCCCccEEEcccCcCc----ccCCccCCCCCCCcEEeccCccCcccCchhhh-
Q 038393 209 --------------------------GNLFQLQWLDLSDNQLS----GSFPSFKFKMPRLQVLDLSVNGLSGELPANFC- 257 (618)
Q Consensus 209 --------------------------~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~- 257 (618)
..+++|+.|++++|... ......+..+++|+.++++.+.+.+.....+.
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 12344555555554310 00112234455666666665555432111111
Q ss_pred -hcCCCCcEEEccCCcccccCCccC-----CCCCCCcEEEeecccccccCC-ccccC---CCCCCEEEcCCCCCccCccc
Q 038393 258 -NNFPFLEELYLSKNMFYGEIPSDL-----ANCSYLRILVLQFNNFSGAIP-KEIGN---LTKLEKLDLQFNRLRELSFL 327 (618)
Q Consensus 258 -~~l~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~L~~n~l~~~~~~ 327 (618)
...++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..+|+.|++++|.+...+.
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~- 348 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC- 348 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC-
Confidence 124589999999999998888877 6677777777777766 334 22222 2679999999999876542
Q ss_pred cccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeeccccc--CCchhhhcccccceeeeCCcccccccC-cccc
Q 038393 328 SSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISG--GIPEEISNLTNLIAIYLGGNKLNGTIP-ITLG 404 (618)
Q Consensus 328 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~ 404 (618)
...+++|++|++++|.+++..|..+..++ ++++|++++|.+.+ .+|..+..+++|+.|++++|++.+.+| ..+.
T Consensus 349 --~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 349 --PPSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp --CSSCCCCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred --ccCCCCceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 36789999999999999998898888887 89999999999987 345678999999999999999998444 4588
Q ss_pred ccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCcc-ccccccCcEE
Q 038393 405 KLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSST-LWNIKYILYL 483 (618)
Q Consensus 405 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L 483 (618)
.+++|++|++++|++++..|..+. ++|+.|++++|+++. +|..+..+++|+.|++++|+++.++.. +..+++|++|
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 899999999999999876665443 699999999999995 555555999999999999999998766 7889999999
Q ss_pred eCcCCcceec
Q 038393 484 NLSSNSFTGS 493 (618)
Q Consensus 484 ~ls~n~l~~~ 493 (618)
++++|++.+.
T Consensus 503 ~l~~N~~~c~ 512 (562)
T 3a79_B 503 WLHDNPWDCT 512 (562)
T ss_dssp ECCSCCBCCC
T ss_pred EecCCCcCCC
Confidence 9999998743
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-39 Score=357.24 Aligned_cols=436 Identities=21% Similarity=0.194 Sum_probs=336.0
Q ss_pred EcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCC
Q 038393 61 NISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNV 140 (618)
Q Consensus 61 ~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 140 (618)
+-++.+++ .+|+.+. +++++|||++|+|+ +..|.+|.++++|++|+|++|++++..|..|.++
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~--------------~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L 99 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLR--------------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 99 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCC--------------EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCC--------------CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC
Confidence 44555666 4565553 48999999999995 3345679999999999999999998888899999
Q ss_pred CCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccC-C-CCCCCCCccEEE
Q 038393 141 TKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTI-P-YAGNLFQLQWLD 218 (618)
Q Consensus 141 ~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~-~~~~l~~L~~L~ 218 (618)
++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+.. + ....+++|++|+
T Consensus 100 ~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 100 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp TTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhc
Confidence 99999999999999777788999999999999999999877778999999999999999997542 3 337799999999
Q ss_pred cccCcCcccCCccCCCCCC----CcEEeccCccCcccCchhhhhcCCCCcEEEccCCccccc------------------
Q 038393 219 LSDNQLSGSFPSFKFKMPR----LQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGE------------------ 276 (618)
Q Consensus 219 l~~n~l~~~~~~~~~~l~~----L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------ 276 (618)
+++|++++..+..+..+.+ ...++++.|.+. .++...+. ...++.+++.+|.....
T Consensus 180 L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~ 257 (635)
T 4g8a_A 180 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 257 (635)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEE
T ss_pred ccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccc
Confidence 9999999887777655443 347889999998 44444433 33455566655532100
Q ss_pred ----------------------------------------CCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEc
Q 038393 277 ----------------------------------------IPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDL 316 (618)
Q Consensus 277 ----------------------------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 316 (618)
.+..+..+.+++.+.+.++.+... ..+.....++.|++
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l 335 (635)
T 4g8a_A 258 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLEL 335 (635)
T ss_dssp EECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEE
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhc
Confidence 001112223344444444443321 12333445555555
Q ss_pred CCCCCccCcc------------------ccccCCCCCCCEEEcccccCccc--cchhhhhccccccEEEeeecccccCCc
Q 038393 317 QFNRLRELSF------------------LSSLSNCKYLKYFSLSNNLLDGI--LPRAIGNLSQSIEEFWIVSCNISGGIP 376 (618)
Q Consensus 317 ~~n~l~~~~~------------------~~~l~~~~~L~~L~ls~n~l~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~ 376 (618)
.+|.+..++. ......+++|+.+++++|.+... .+..+.... +++.+++..+..... +
T Consensus 336 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~-~L~~L~~~~~~~~~~-~ 413 (635)
T 4g8a_A 336 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGVITM-S 413 (635)
T ss_dssp ESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS-CCCEEECCSCSEEEE-C
T ss_pred ccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhh-hhhhhhccccccccc-c
Confidence 5554432221 12234678999999999988643 445555554 899999998877653 4
Q ss_pred hhhhcccccceeeeCCcccccccC-ccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcc-eeccchhhhcc
Q 038393 377 EEISNLTNLIAIYLGGNKLNGTIP-ITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNML-SGFIPACFGNL 454 (618)
Q Consensus 377 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l 454 (618)
..+..+++|+.++++.+......+ ..+..+++++.+++++|.+.+..+..+..++.|+.|++++|.+ ....|..|..+
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence 567889999999999988775544 5678899999999999999999999999999999999999985 44678899999
Q ss_pred cCCCceecCCCCCcCC-CccccccccCcEEeCcCCcceecCCCCCcccccceeeccccchhhhhhh
Q 038393 455 TYLKKLNLGSNQLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVLVQIDLSMNNFSELFQ 519 (618)
Q Consensus 455 ~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~l~~ 519 (618)
++|+.|++++|++++. +..+..+++|++|+|++|++++..|..+..+++|+.|++++|+++.+.+
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 9999999999999998 6778899999999999999999888899999999999999999987754
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6e-39 Score=335.50 Aligned_cols=385 Identities=24% Similarity=0.267 Sum_probs=152.7
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCC
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIP 134 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 134 (618)
.++++|++++|++ |.+|++++++++|++|++++|.+. |.+|.+++++++|+.++++.|..
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~--------------~~~p~~~~~l~~L~~l~l~~c~~----- 70 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWE--------------RNAPPGNGEQREMAVSRLRDCLD----- 70 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHH--------------HTSCTTSCCCHHHHHHHHHHHHH-----
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCccc--------------ccCCcccccchhcchhhhhhhhc-----
Confidence 3566666666666 456666666666666666666553 33444444444431111111100
Q ss_pred ccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCc
Q 038393 135 KEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQL 214 (618)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L 214 (618)
.++++|++++|.+++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|++++.... .++|
T Consensus 71 ------~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L 133 (454)
T 1jl5_A 71 ------RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLL 133 (454)
T ss_dssp ------HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTC
T ss_pred ------cCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCC
Confidence 112444444444442 2221 1344444554444443 3322 24444455554444432111 1344
Q ss_pred cEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeec
Q 038393 215 QWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQF 294 (618)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 294 (618)
++|++++|++++ +| .+..+++|++|++++|++++ +|.. .++|++|++++|.+++ +| .+.++++|++|++++
T Consensus 134 ~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 134 EYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 555555554443 33 24444555555555554442 3321 2345555555555443 22 344455555555555
Q ss_pred ccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccC
Q 038393 295 NNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGG 374 (618)
Q Consensus 295 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 374 (618)
|.+++ +|.. .++|+.|++++|.++.+| .+..+++|++|++++|++++... ...++++|++++|.+.+
T Consensus 205 N~l~~-l~~~---~~~L~~L~l~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~- 271 (454)
T 1jl5_A 205 NSLKK-LPDL---PLSLESIVAGNNILEELP---ELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTD- 271 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSC-
T ss_pred CcCCc-CCCC---cCcccEEECcCCcCCccc---ccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccc-
Confidence 55443 2221 134555555555554443 14444555555555555443211 11245555555554443
Q ss_pred CchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcC-CCCCeEEcCCCcceeccchhhhc
Q 038393 375 IPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRL-AALFQLDLGGNMLSGFIPACFGN 453 (618)
Q Consensus 375 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 453 (618)
+|.. +++|+.|++++|++.+.. . ..++|++|++++|++++. + .+ ++|+.|++++|++++ +|..
T Consensus 272 l~~~---~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~--- 335 (454)
T 1jl5_A 272 LPEL---PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL--- 335 (454)
T ss_dssp CCCC---CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---
T ss_pred cCcc---cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---
Confidence 2221 245555555555554321 1 013455555555555431 1 11 355555555555554 2221
Q ss_pred ccCCCceecCCCCCcCCCccccccccCcEEeCcCCccee--cCCCCCccc-------------ccceeeccccchhhhh
Q 038393 454 LTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTG--SLPLGIGNL-------------KVLVQIDLSMNNFSEL 517 (618)
Q Consensus 454 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~--~~p~~l~~l-------------~~L~~l~l~~n~l~~l 517 (618)
+++|+.|++++|.++.++. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|+++++
T Consensus 336 ~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 336 PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 3455555555555555443 24555555555555555 445555444 6788888888887753
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.4e-38 Score=330.88 Aligned_cols=378 Identities=23% Similarity=0.285 Sum_probs=267.0
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCC-------------CEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCE
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSL-------------QTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRN 121 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L-------------~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~ 121 (618)
.+++.|++++|.+.|.+|+.++++++| ++|++++|.++ .+|. -.++|++
T Consensus 34 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~---------------~lp~---~~~~L~~ 95 (454)
T 1jl5_A 34 KSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS---------------SLPE---LPPHLES 95 (454)
T ss_dssp CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS---------------CCCS---CCTTCSE
T ss_pred cchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc---------------cCCC---CcCCCCE
Confidence 578889999999999999999999875 99999999986 2333 1378999
Q ss_pred EeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccC
Q 038393 122 ISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNL 201 (618)
Q Consensus 122 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 201 (618)
|++++|.+++ +|.. +++|++|++++|.+++ +|.. .++|++|++++|.+++ +| .++++++|++|++++|++
T Consensus 96 L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 96 LVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp EECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred EEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcC
Confidence 9999999996 6653 4899999999999984 3322 2689999999999996 67 599999999999999999
Q ss_pred cccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccC
Q 038393 202 TGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDL 281 (618)
Q Consensus 202 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l 281 (618)
++.+.. ..+|++|++++|++++ +| .+..+++|+.|++++|++++ +|.. .++|++|++++|.++ .+| .+
T Consensus 166 ~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~ 233 (454)
T 1jl5_A 166 KKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP-EL 233 (454)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC-CC
T ss_pred cccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc-cc
Confidence 864332 4689999999999986 55 58899999999999999984 5542 468999999999998 566 48
Q ss_pred CCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccc
Q 038393 282 ANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSI 361 (618)
Q Consensus 282 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L 361 (618)
..+++|++|++++|++++ +|. .+++|+.|++++|.++.+|. ..++|++|++++|++++... .+.++
T Consensus 234 ~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~-----~~~~L~~L~ls~N~l~~l~~-----~~~~L 299 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSGLSE-----LPPNL 299 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSEESC-----CCTTC
T ss_pred CCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCc-----ccCcCCEEECcCCccCcccC-----cCCcC
Confidence 999999999999999985 443 24899999999999998773 24789999999999987421 22478
Q ss_pred cEEEeeecccccCCchhhhcc-cccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCC
Q 038393 362 EEFWIVSCNISGGIPEEISNL-TNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGG 440 (618)
Q Consensus 362 ~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 440 (618)
+.|++++|.+.+. ..+ ++|+.|++++|++.+ +|.. +++|++|++++|+++. +|. .+++|+.|++++
T Consensus 300 ~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 300 YYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEY 366 (454)
T ss_dssp CEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCC
Confidence 8888888887752 123 578888888888885 4443 5788888888888874 454 467888888888
Q ss_pred Cccee--ccchhhhcccCCCceecCCCCCcCC-CccccccccCcEEeCcCCccee--cCCCCCcccccceeeccccchhh
Q 038393 441 NMLSG--FIPACFGNLTYLKKLNLGSNQLTST-SSTLWNIKYILYLNLSSNSFTG--SLPLGIGNLKVLVQIDLSMNNFS 515 (618)
Q Consensus 441 n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~l~l~~n~l~ 515 (618)
|++++ .+|..+..+ +.|.+.+. +. .+++|++|++++|++++ .+|.. ++.+.+.+|.+.
T Consensus 367 N~l~~l~~ip~~l~~L--------~~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~ 429 (454)
T 1jl5_A 367 NPLREFPDIPESVEDL--------RMNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVV 429 (454)
T ss_dssp SCCSSCCCCCTTCCEE--------ECCC----------------------------------------------------
T ss_pred CCCCcCCCChHHHHhh--------hhccccccccc---ccCcCCEEECCCCcCCccccchhh------HhheeCcCcccC
Confidence 88887 455554433 22333332 32 24789999999999986 55543 455566666544
Q ss_pred h
Q 038393 516 E 516 (618)
Q Consensus 516 ~ 516 (618)
+
T Consensus 430 ~ 430 (454)
T 1jl5_A 430 D 430 (454)
T ss_dssp -
T ss_pred C
Confidence 3
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-37 Score=324.28 Aligned_cols=344 Identities=19% Similarity=0.150 Sum_probs=178.6
Q ss_pred cEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCc
Q 038393 56 RVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPK 135 (618)
Q Consensus 56 ~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 135 (618)
+++.|++++|.+++. | .++.+++|++|++++|.+++ +| ++.+++|++|++++|.+++. +
T Consensus 43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~---------------~~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT---------------LD--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC---------------CC--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe---------------Ec--cccCCCCCEEECcCCCCcee-e-
Confidence 455555555555542 2 35555555555555555431 11 44455555555555555432 2
Q ss_pred cccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCcc
Q 038393 136 EIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQ 215 (618)
Q Consensus 136 ~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~ 215 (618)
++++++|++|++++|++++ +| ++.+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|+
T Consensus 102 -~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~ 173 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLT 173 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCC
T ss_pred -cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCC
Confidence 4555555555555555543 22 44555555555555555432 1444555555555555332222 223444444
Q ss_pred EEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecc
Q 038393 216 WLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFN 295 (618)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 295 (618)
+|++++|++++ +| +.. +++|++|++++|.+++. .+..+++|++|++++|
T Consensus 174 ~L~ls~n~l~~-l~--l~~-------------------------l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 174 TLDCSFNKITE-LD--VSQ-------------------------NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp EEECCSSCCCC-CC--CTT-------------------------CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred EEECCCCccce-ec--ccc-------------------------CCCCCEEECcCCcCCee---ccccCCCCCEEECcCC
Confidence 44444444443 12 334 44455555555554432 2444555555555555
Q ss_pred cccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCC
Q 038393 296 NFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGI 375 (618)
Q Consensus 296 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 375 (618)
++++ +| ++.+++|+.|++++|.++.++ ...+++|+.|+++.|+ ++.+++++|...+.+
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYF 280 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEE
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCC---------------CCEEECCCCccCCcc
Confidence 5544 23 444555555555555555443 2334445555444432 223333444433333
Q ss_pred chhhhcccccceeeeCCcccccccCc--------cccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceecc
Q 038393 376 PEEISNLTNLIAIYLGGNKLNGTIPI--------TLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFI 447 (618)
Q Consensus 376 ~~~~~~l~~L~~L~L~~n~i~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 447 (618)
| ++.+++|+.|++++|...+.+|. .+..+++|++|++++|++++. + +..+++|+.|++++|++++
T Consensus 281 ~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-- 353 (457)
T 3bz5_A 281 Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-- 353 (457)
T ss_dssp E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--
T ss_pred c--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--
Confidence 3 23445555555555554433332 123346778888888887763 2 6777788888888888775
Q ss_pred chhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCcceecCCCCC
Q 038393 448 PACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGI 498 (618)
Q Consensus 448 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l 498 (618)
++.|..|++++|.+.+. ..+..+..+++++|+++|.+|..+
T Consensus 354 ------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 ------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp ------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred ------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChhH
Confidence 24566667777777665 234567778888888888887654
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-37 Score=324.32 Aligned_cols=346 Identities=32% Similarity=0.408 Sum_probs=218.2
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCC
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIP 134 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 134 (618)
.+++.|++++++++. +| .+..+++|++|++++|.+. .+|. +.++++|++|++++|.+++..+
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~---------------~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT---------------DITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC---------------CCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC---------------Cchh-hhccccCCEEECCCCccccChh
Confidence 367788888888774 44 3777888888888888774 2233 6778888888888888875544
Q ss_pred ccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCc
Q 038393 135 KEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQL 214 (618)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L 214 (618)
++++++|++|++++|.+++. +. +..+++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.. .+..+++|
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L 179 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK-PLANLTTL 179 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG-GGTTCTTC
T ss_pred --hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch-hhccCCCC
Confidence 77888888888888887754 32 77788888888888877642 2 47777888888775 3443322 24566777
Q ss_pred cEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeec
Q 038393 215 QWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQF 294 (618)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 294 (618)
++|++++|.+++. ..+..+++|++|++++|.+++..+ ...+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 180 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 180 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 252 (466)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCC
Confidence 7777777776543 235566677777777776664433 22366677777776666542 2455666666666666
Q ss_pred ccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccC
Q 038393 295 NNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGG 374 (618)
Q Consensus 295 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 374 (618)
|.+.+..+ +..+++|+.|++++|.++.++. +..+++|++|++++|++++..+
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~----------------------- 304 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP----------------------- 304 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----------------------
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----------------------
Confidence 66654433 5556666666666666655542 4455555666655555543321
Q ss_pred CchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcc
Q 038393 375 IPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNL 454 (618)
Q Consensus 375 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 454 (618)
+..+++|+.|++++|++.+..+ +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +..+
T Consensus 305 ----~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 374 (466)
T 1o6v_A 305 ----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 374 (466)
T ss_dssp ----GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred ----hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcC
Confidence 3455566666666666655443 45566666666666666543 345566666666666666665544 5556
Q ss_pred cCCCceecCCCCCcCCC
Q 038393 455 TYLKKLNLGSNQLTSTS 471 (618)
Q Consensus 455 ~~L~~L~l~~n~l~~~~ 471 (618)
++|+.|++++|++++.|
T Consensus 375 ~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 375 TRITQLGLNDQAWTNAP 391 (466)
T ss_dssp TTCCEEECCCEEEECCC
T ss_pred CCCCEEeccCCcccCCc
Confidence 66666666666665543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1e-36 Score=321.58 Aligned_cols=324 Identities=30% Similarity=0.396 Sum_probs=266.3
Q ss_pred CCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccC
Q 038393 54 THRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTI 133 (618)
Q Consensus 54 ~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 133 (618)
..+++.|++++|.+++..+ +.++++|++|++++|.+. .++. +.++++|++|++++|.+++..
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~---------------~~~~-~~~l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA---------------DITP-LANLTNLTGLTLFNNQITDID 128 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC---------------CCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc---------------cChh-hcCCCCCCEEECCCCCCCCCh
Confidence 4689999999999997644 999999999999999985 2333 889999999999999998654
Q ss_pred CccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCC
Q 038393 134 PKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQ 213 (618)
Q Consensus 134 ~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~ 213 (618)
+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+. ..+.++++|++|++++|.+.+. +....+++
T Consensus 129 ~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~ 200 (466)
T 1o6v_A 129 P--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI-SVLAKLTN 200 (466)
T ss_dssp G--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTT
T ss_pred H--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC-hhhccCCC
Confidence 3 9999999999999999985 33 59999999999997 455543 2389999999999999998754 44678899
Q ss_pred ccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEee
Q 038393 214 LQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQ 293 (618)
Q Consensus 214 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~ 293 (618)
|++|++++|.+++..+ +..+++|+.|++++|.+++ ++ . +..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 201 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-T-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273 (466)
T ss_dssp CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-G-GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-h-hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECC
Confidence 9999999999987655 6679999999999999984 43 2 3458999999999999986654 8899999999999
Q ss_pred cccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeeccccc
Q 038393 294 FNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISG 373 (618)
Q Consensus 294 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 373 (618)
+|.+.+..+ +..+++|+.|++++|+++.++. +..+++|++|++++|++++..|
T Consensus 274 ~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~---------------------- 326 (466)
T 1o6v_A 274 ANQISNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP---------------------- 326 (466)
T ss_dssp SSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG----------------------
T ss_pred CCccCcccc--ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh----------------------
Confidence 999987544 8899999999999999998763 6788999999999998886543
Q ss_pred CCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceec
Q 038393 374 GIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGF 446 (618)
Q Consensus 374 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 446 (618)
+..+++|+.|++++|++.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 327 -----~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 327 -----VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp -----GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred -----hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 33456677777777777654 356677777777887777776655 67777788888888877753
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-37 Score=325.84 Aligned_cols=341 Identities=20% Similarity=0.195 Sum_probs=208.9
Q ss_pred EEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccC
Q 038393 60 LNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGN 139 (618)
Q Consensus 60 L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 139 (618)
++.++++++ .+|..+. +++++|+|++|.+. +..|..|.++++|++|+|++|.+++..|..|.+
T Consensus 16 v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK--------------TLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78 (477)
T ss_dssp EECCSCCCS-SCCSCCC--TTCSEEECCSSCCC--------------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred EEeCCCCcC-cCCCCCC--CCCcEEECCCCccc--------------eECHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence 444555666 4555453 57777877777774 233455677777777777777777666777777
Q ss_pred CCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEc
Q 038393 140 VTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDL 219 (618)
Q Consensus 140 l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 219 (618)
+++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+.
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~----------------- 141 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV----------------- 141 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-----------------
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-----------------
Confidence 777777777777776544455667777777777777776666666666666666666555554
Q ss_pred ccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccc
Q 038393 220 SDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSG 299 (618)
Q Consensus 220 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 299 (618)
+..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+
T Consensus 142 ------~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 142 ------YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ------EECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred ------eeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 344455666677777777777776 4454444557888888888888877777778888888888888877665
Q ss_pred cCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhh
Q 038393 300 AIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEI 379 (618)
Q Consensus 300 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 379 (618)
.++.......+|+.|++++|.++.++. . .+
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~-~-------------------------------------------------~~ 244 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPY-L-------------------------------------------------AV 244 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCH-H-------------------------------------------------HH
T ss_pred ccCcccccCccccEEECcCCcccccCH-H-------------------------------------------------Hh
Confidence 555444333445555555444444332 1 23
Q ss_pred hcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCc
Q 038393 380 SNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKK 459 (618)
Q Consensus 380 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 459 (618)
..+++|+.|++++|++.+..+..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 33444555555555555444445555555666666666655555555666666666666666666555555666666666
Q ss_pred eecCCCCCcCCCccccccccCcEEeCcCCcce
Q 038393 460 LNLGSNQLTSTSSTLWNIKYILYLNLSSNSFT 491 (618)
Q Consensus 460 L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~ 491 (618)
|++++|++.+.+...|.......+++.++...
T Consensus 325 L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~ 356 (477)
T 2id5_A 325 LILDSNPLACDCRLLWVFRRRWRLNFNRQQPT 356 (477)
T ss_dssp EECCSSCEECSGGGHHHHTTTTSSCCTTCCCB
T ss_pred EEccCCCccCccchHhHHhhhhccccCccCce
Confidence 66666666655444443333333334444333
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-35 Score=306.63 Aligned_cols=310 Identities=23% Similarity=0.197 Sum_probs=208.1
Q ss_pred CCCCCCEEeCCCCCCCCcCCcccccCCcccccCCc-cCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeecccccc
Q 038393 77 NLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPS-TLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQG 155 (618)
Q Consensus 77 ~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 155 (618)
.++++++|++++|.+. .+|. .+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++
T Consensus 43 ~l~~l~~l~l~~~~l~---------------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 107 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR---------------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107 (390)
T ss_dssp GGCCCSEEEEESCEES---------------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCceEEEecCCchh---------------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc
Confidence 4567777777777663 2232 24667777777777777776666677777777777777777776
Q ss_pred ccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCC-CCCCCCccEEEcccCcCcccCCccCCC
Q 038393 156 EIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFK 234 (618)
Q Consensus 156 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 234 (618)
..|..|+.+++|++|++++|.++...+..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+++.. +..
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~ 184 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSL 184 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGG
T ss_pred CCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---ccc
Confidence 6666677777777777777777744444456777777777777777665543 366777777777777776432 344
Q ss_pred CCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEE
Q 038393 235 MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKL 314 (618)
Q Consensus 235 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 314 (618)
+++|+.|++++|.+++ ++ ..++|++|++++|.+..... ...++|++|++++|.+++. ..+..+++|+.|
T Consensus 185 l~~L~~L~l~~n~l~~-~~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 253 (390)
T 3o6n_A 185 IPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEV 253 (390)
T ss_dssp CTTCSEEECCSSCCSE-EE-----CCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred ccccceeecccccccc-cC-----CCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEE
Confidence 6777777777777663 21 24567777777777764422 2246777777777777643 456777777888
Q ss_pred EcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcc
Q 038393 315 DLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNK 394 (618)
Q Consensus 315 ~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 394 (618)
++++|.++.++. ..+..+++|++|++++|++++.. ..+..+++|+.|++++|+
T Consensus 254 ~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~--------------------------~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 254 DLSYNELEKIMY-HPFVKMQRLERLYISNNRLVALN--------------------------LYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp ECCSSCCCEEES-GGGTTCSSCCEEECCSSCCCEEE--------------------------CSSSCCTTCCEEECCSSC
T ss_pred ECCCCcCCCcCh-hHccccccCCEEECCCCcCcccC--------------------------cccCCCCCCCEEECCCCc
Confidence 888777776643 56677777777777777766431 122345677777777777
Q ss_pred cccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceec
Q 038393 395 LNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGF 446 (618)
Q Consensus 395 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 446 (618)
+. .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|++...
T Consensus 307 l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 307 LL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 76 3455566777888888888887644 2 56677888888888888753
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-35 Score=309.76 Aligned_cols=343 Identities=20% Similarity=0.182 Sum_probs=234.7
Q ss_pred CCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCC
Q 038393 113 LSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLS 192 (618)
Q Consensus 113 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 192 (618)
++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 34444444444444444432 2 344445555555555544432 2 44455555555555555432 2 44555555
Q ss_pred EEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCc
Q 038393 193 ILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNM 272 (618)
Q Consensus 193 ~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 272 (618)
+|++++|++++. + ++.+++|++|++++|++++. + +..+++|++|++++|+..+.++ + ..+++|++|++++|+
T Consensus 110 ~L~L~~N~l~~l-~-~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D-VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDCSFNK 181 (457)
T ss_dssp EEECCSSCCSCC-C-CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEECCSSC
T ss_pred EEECCCCcCCee-c-CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc--c-ccCCcCCEEECCCCc
Confidence 555555555442 2 44555566666666666542 2 5566777777777775444543 2 347889999999998
Q ss_pred ccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccch
Q 038393 273 FYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPR 352 (618)
Q Consensus 273 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~ 352 (618)
+++. | +..+++|+.|++++|.+++. .++.+++|+.|++++|+++.+| +..+++|++|++++|++++..+.
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCCT
T ss_pred ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcCHH
Confidence 8863 3 78899999999999999865 3889999999999999999976 67889999999999999987644
Q ss_pred hhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCch-------
Q 038393 353 AIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPN------- 425 (618)
Q Consensus 353 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------- 425 (618)
.+ + +++.+++..+ +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.
T Consensus 252 ~l---~-~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 252 TL---S-KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp TC---T-TCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred HC---C-CCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE
Confidence 33 2 6777776543 57889999999877776 46789999999999987665553
Q ss_pred -hhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCcceecCCCCCcccccc
Q 038393 426 -DLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGIGNLKVL 504 (618)
Q Consensus 426 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~~L 504 (618)
.+..+++|+.|++++|++++. .+..+++|+.|++++|+++++ +.|..|++++|.+.|. ..+..|
T Consensus 312 L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l-------~~L~~L~l~~n~l~g~-----~~~~~l 376 (457)
T 3bz5_A 312 LDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF-------SSVGKIPALNNNFEAE-----GQTITM 376 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC-------TTGGGSSGGGTSEEEE-----EEEEEC
T ss_pred echhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc-------cccccccccCCcEEec-----ceeeec
Confidence 245567788888888888874 277788888888888888763 4566667888888766 355677
Q ss_pred eeeccccchhhh
Q 038393 505 VQIDLSMNNFSE 516 (618)
Q Consensus 505 ~~l~l~~n~l~~ 516 (618)
..+++++|+++.
T Consensus 377 ~~l~l~~N~l~g 388 (457)
T 3bz5_A 377 PKETLTNNSLTI 388 (457)
T ss_dssp CCBCCBTTBEEE
T ss_pred CccccccCcEEE
Confidence 888899888864
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=310.76 Aligned_cols=291 Identities=20% Similarity=0.187 Sum_probs=229.4
Q ss_pred eeeeeeCCC---------CCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCC
Q 038393 45 WTGVTCDVR---------THRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSN 115 (618)
Q Consensus 45 w~gv~c~~~---------~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~ 115 (618)
|..|.|... ...++.|+|++|.+++..+..|.++++|++|+|++|.+. +..|..|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--------------~~~~~~~~~ 78 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS--------------AVEPGAFNN 78 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC--------------EECTTTTTT
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC--------------EeChhhhhC
Confidence 556666532 357899999999999998999999999999999999984 455778999
Q ss_pred CCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEE
Q 038393 116 CKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILD 195 (618)
Q Consensus 116 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 195 (618)
+++|++|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 99999999999999977777899999999999999999988899999999999999999999998899999999999999
Q ss_pred eecccCcccCCC-CCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCccc
Q 038393 196 LSVNNLTGTIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFY 274 (618)
Q Consensus 196 l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 274 (618)
+++|.+++..+. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++...+. ..+|++|++++|.++
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLT 237 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCC
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCccc
Confidence 999998865543 367888888888888888777777778888888888887776666666554 447777777777776
Q ss_pred ccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccc
Q 038393 275 GEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILP 351 (618)
Q Consensus 275 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~ 351 (618)
...+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++.++. ..+..+++|++|++++|++++..+
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-TTBTTCTTCCEEECCSSCCSCCCG
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-HHhcCcccCCEEECCCCcCceeCH
Confidence 4444456667777777777777766666666666666666666666665533 445555566666666655554433
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-35 Score=321.08 Aligned_cols=288 Identities=24% Similarity=0.191 Sum_probs=146.8
Q ss_pred CCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCC
Q 038393 113 LSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLS 192 (618)
Q Consensus 113 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 192 (618)
+.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..+..|.++++|+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 34455555555555555555445555555555555555555544444455555555555555555543333345555555
Q ss_pred EEEeecccCcccCCC-CCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCC
Q 038393 193 ILDLSVNNLTGTIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKN 271 (618)
Q Consensus 193 ~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 271 (618)
+|++++|.+.+.++. +..+++|++|++++|.+++.. +..+++|+.|++++|.+++ ++ ..++|+.|++++|
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n 221 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHN 221 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSS
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCC
Confidence 555555555544442 244555555555555554321 2234555555555555542 11 1344555555555
Q ss_pred cccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccc
Q 038393 272 MFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILP 351 (618)
Q Consensus 272 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~ 351 (618)
.+....+.. .++|+.|++++|.+++ +..+..+++|+.|++++|.+..++. ..+..+++|++|++++|.+++..
T Consensus 222 ~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~- 294 (597)
T 3oja_B 222 SINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRLVALN- 294 (597)
T ss_dssp CCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECTTSCCCEEE-
T ss_pred ccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH-HHhcCccCCCEEECCCCCCCCCC-
Confidence 554332211 2455555555555553 2445555556666666655555432 34555555666666665554321
Q ss_pred hhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCC
Q 038393 352 RAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLA 431 (618)
Q Consensus 352 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 431 (618)
..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.. +..++
T Consensus 295 -------------------------~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~ 345 (597)
T 3oja_B 295 -------------------------LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH 345 (597)
T ss_dssp -------------------------CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred -------------------------cccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcC
Confidence 11223445555555555555 33444455555666666666555331 34455
Q ss_pred CCCeEEcCCCccee
Q 038393 432 ALFQLDLGGNMLSG 445 (618)
Q Consensus 432 ~L~~L~Ls~n~l~~ 445 (618)
+|+.|++++|++..
T Consensus 346 ~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 346 TLKNLTLSHNDWDC 359 (597)
T ss_dssp CCSEEECCSSCEEH
T ss_pred CCCEEEeeCCCCCC
Confidence 66666666666554
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5e-36 Score=300.32 Aligned_cols=274 Identities=22% Similarity=0.290 Sum_probs=214.8
Q ss_pred ccCCCCCHHHHHHHHHhhccCCCCCCCcccCCC----CCCCCCcceeeeeeCC--------CCCcEEEEEcCCCCCcccC
Q 038393 4 SANTTSITTDQQALLSLKGHVTEDPANFLARNW----NTSSSVCNWTGVTCDV--------RTHRVTALNISGLNLTGTI 71 (618)
Q Consensus 4 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~~~~ 71 (618)
++...+..+|++||++||..+..+|.+|+.. | ....++|.|.|+.|+. ...+|+.|+|++|+++ .+
T Consensus 19 ~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l 96 (328)
T 4fcg_A 19 FQGSTALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF 96 (328)
T ss_dssp CC--CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC
T ss_pred eeccccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc
Confidence 3445577899999999999987788888876 8 4567899999999952 3468999999999998 67
Q ss_pred CccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeecc
Q 038393 72 PSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGN 151 (618)
Q Consensus 72 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 151 (618)
|+.++++++|++|+|++|.+. .+|..++++++|++|+|++|.++ .+|..|+++++|++|++++|
T Consensus 97 p~~l~~l~~L~~L~L~~n~l~---------------~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 97 PDQAFRLSHLQHMTIDAAGLM---------------ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CSCGGGGTTCSEEEEESSCCC---------------CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred ChhhhhCCCCCEEECCCCCcc---------------chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 888999999999999999885 56777888999999999999998 77889999999999999998
Q ss_pred ccccccCcccCC---------CCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccC
Q 038393 152 QLQGEIPEELGN---------LAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDN 222 (618)
Q Consensus 152 ~i~~~~p~~l~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n 222 (618)
.+.+.+|..+.. +++|++|++++|.++ .+|..++++++|++|++++|.+.+.++.+..+++|++|++++|
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 888888877654 888888888888887 6777788888888888888888766555566777777777777
Q ss_pred cCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccc
Q 038393 223 QLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNF 297 (618)
Q Consensus 223 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 297 (618)
.+.+.+|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 777777777777777777777777666666665533 66666666666666666666666666666666655544
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.4e-34 Score=289.88 Aligned_cols=307 Identities=22% Similarity=0.368 Sum_probs=153.0
Q ss_pred ccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccc
Q 038393 75 LGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQ 154 (618)
Q Consensus 75 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 154 (618)
+..+++|++|++++|.+. .+| .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 40 ~~~l~~L~~L~l~~~~i~---------------~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~ 101 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA---------------SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT 101 (347)
T ss_dssp HHHHTTCSEEECCSSCCC---------------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred chhcccccEEEEeCCccc---------------cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc
Confidence 344556666666666553 122 24555666666666666553322 556666666666666655
Q ss_pred cccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCC
Q 038393 155 GEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFK 234 (618)
Q Consensus 155 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 234 (618)
+ + +.+..+++|++|++++|.+++.. . +..+++|++|++++|.....++....+++|++|++++|.+.+..+ +..
T Consensus 102 ~-~-~~~~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~ 175 (347)
T 4fmz_A 102 D-I-SALQNLTNLRELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IAN 175 (347)
T ss_dssp C-C-GGGTTCTTCSEEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred C-c-hHHcCCCcCCEEECcCCcccCch-h-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hcc
Confidence 3 2 24566666666666666655332 2 555555666655555433333333444445555555544442221 334
Q ss_pred CCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEE
Q 038393 235 MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKL 314 (618)
Q Consensus 235 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 314 (618)
+++|++|++++|.+. .++. +..+++|+.|++++|.+.+.. + +..+++|+.|
T Consensus 176 l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~------------------------~--~~~~~~L~~L 226 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDIT------------------------P--VANMTRLNSL 226 (347)
T ss_dssp CTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCG------------------------G--GGGCTTCCEE
T ss_pred CCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCc------------------------h--hhcCCcCCEE
Confidence 444555555555444 2222 122444444444444443222 2 3344444444
Q ss_pred EcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcc
Q 038393 315 DLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNK 394 (618)
Q Consensus 315 ~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 394 (618)
++++|.++.++. +..+++|++|++++|.+++. ..+..+++|+.|++++|+
T Consensus 227 ~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 227 KIGNNKITDLSP---LANLSQLTWLEIGTNQISDI---------------------------NAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp ECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC---------------------------GGGTTCTTCCEEECCSSC
T ss_pred EccCCccCCCcc---hhcCCCCCEEECCCCccCCC---------------------------hhHhcCCCcCEEEccCCc
Confidence 444444444431 34444555555555544421 012334445555555555
Q ss_pred cccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCc
Q 038393 395 LNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLT 468 (618)
Q Consensus 395 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 468 (618)
+.+. ..+..+++|+.|++++|++++..+..+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 277 l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 277 ISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 4432 234455566666666666655555556666666666666666665544 556666666666666654
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.5e-34 Score=287.40 Aligned_cols=307 Identities=24% Similarity=0.345 Sum_probs=220.1
Q ss_pred CCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCC
Q 038393 113 LSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLS 192 (618)
Q Consensus 113 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 192 (618)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++. ..+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 3456667777777766653 23 366666677777776666633 32 66666666666666666532 2455556666
Q ss_pred EEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCc
Q 038393 193 ILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNM 272 (618)
Q Consensus 193 ~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 272 (618)
+|++++|.+.+..+ +..+++|+.|++++|.....++. +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~-------------------------~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 114 ELYLNEDNISDISP-------------------------LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESK 166 (347)
T ss_dssp EEECTTSCCCCCGG-------------------------GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECcCCcccCchh-------------------------hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCC
Confidence 66665555543222 44455555555555543323222 2336666666666666
Q ss_pred ccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccch
Q 038393 273 FYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPR 352 (618)
Q Consensus 273 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~ 352 (618)
+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+..++. +..+++|++|++++|.+++..+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc-
Confidence 654332 6667777777777777764433 7788999999999999988763 7788999999999998775321
Q ss_pred hhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCC
Q 038393 353 AIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAA 432 (618)
Q Consensus 353 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 432 (618)
+..+++|+.|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++
T Consensus 239 --------------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~ 288 (347)
T 4fmz_A 239 --------------------------LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQ 288 (347)
T ss_dssp --------------------------GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred --------------------------hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCC
Confidence 55678899999999999864 4688999999999999999865 46889999
Q ss_pred CCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCcce
Q 038393 433 LFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFT 491 (618)
Q Consensus 433 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~ 491 (618)
|+.|++++|++++..+..+..+++|+.|++++|++++.+. +..++.|++|++++|.++
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence 9999999999999999999999999999999999999855 788999999999999986
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-33 Score=291.14 Aligned_cols=309 Identities=20% Similarity=0.152 Sum_probs=209.0
Q ss_pred CCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEE
Q 038393 115 NCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSIL 194 (618)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 194 (618)
.++++++|++++|.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 36789999999999987666668999999999999999998777899999999999999999998888889999999999
Q ss_pred EeecccCcccCCCC-CCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcc
Q 038393 195 DLSVNNLTGTIPYA-GNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMF 273 (618)
Q Consensus 195 ~l~~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 273 (618)
++++|.++..++.. ..+++|++|++++|.+++..+..+..+++|++|++++|++++ ++. ..+++|+.|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~---~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCG---GGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-ccc---ccccccceeecccccc
Confidence 99999998666554 678888888888888887777777788888888888888773 332 2366777777777765
Q ss_pred cccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchh
Q 038393 274 YGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRA 353 (618)
Q Consensus 274 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~ 353 (618)
.+. ...++|++|++++|.+. .++. ...++|+.|++++|.+++.
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~------------------------~~~~----~~~~~L~~L~l~~n~l~~~---- 241 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSIN------------------------VVRG----PVNVELTILKLQHNNLTDT---- 241 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCC------------------------EEEC----CCCSSCCEEECCSSCCCCC----
T ss_pred ccc-----CCCCcceEEECCCCeee------------------------eccc----cccccccEEECCCCCCccc----
Confidence 432 22234555555555444 3321 1123455555555544421
Q ss_pred hhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCC
Q 038393 354 IGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAAL 433 (618)
Q Consensus 354 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 433 (618)
..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++ ++..+..+++|
T Consensus 242 -----------------------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L 297 (390)
T 3o6n_A 242 -----------------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 297 (390)
T ss_dssp -----------------------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTC
T ss_pred -----------------------HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCC
Confidence 123344555555555555555555555555666666666665553 23334455666
Q ss_pred CeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCcce
Q 038393 434 FQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFT 491 (618)
Q Consensus 434 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~ 491 (618)
+.|++++|++.. +|..+..+++|+.|++++|+++..+ +..++.|++|++++|++.
T Consensus 298 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 298 KVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CEEECCCCccee-cCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 666666666653 3444555666666666666665543 344556666666666665
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.8e-33 Score=302.44 Aligned_cols=310 Identities=20% Similarity=0.165 Sum_probs=224.0
Q ss_pred CCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEE
Q 038393 116 CKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILD 195 (618)
Q Consensus 116 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 195 (618)
+.+++.|++++|.++...+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788888888888877777789999999999999999988888999999999999999999998888899999999999
Q ss_pred eecccCcccCCCC-CCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCccc
Q 038393 196 LSVNNLTGTIPYA-GNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFY 274 (618)
Q Consensus 196 l~~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 274 (618)
+++|.+++.++.. ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ++. ..+++|+.|++++|.+.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~---~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCG---GGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cCh---hhhhhhhhhhcccCccc
Confidence 9999999777664 788999999999999988888888888999999999998874 332 23677888888888775
Q ss_pred ccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhh
Q 038393 275 GEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAI 354 (618)
Q Consensus 275 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~ 354 (618)
+. ...++|+.|++++|.+....+.. .++|+.|++++|.++.. ..+..+++|+.|++++|.+++
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~------ 268 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEK------ 268 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCE------
T ss_pred cc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCC------
Confidence 42 33456667777766665432211 24555555555555543 233444444444444444443
Q ss_pred hhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCC
Q 038393 355 GNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALF 434 (618)
Q Consensus 355 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 434 (618)
..|..+..+++|+.|++++|.+.+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+
T Consensus 269 -------------------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~ 327 (597)
T 3oja_B 269 -------------------IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327 (597)
T ss_dssp -------------------EESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred -------------------CCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCC
Confidence 333445566677777777777764 3445556677777777777776 4566666677777
Q ss_pred eEEcCCCcceeccchhhhcccCCCceecCCCCCcCC
Q 038393 435 QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTST 470 (618)
Q Consensus 435 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 470 (618)
.|++++|.+.+.. +..+++|+.|++++|++.+.
T Consensus 328 ~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 328 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred EEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 7777777776542 44556677777777776654
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4e-32 Score=273.35 Aligned_cols=295 Identities=23% Similarity=0.253 Sum_probs=182.0
Q ss_pred EEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcc
Q 038393 57 VTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKE 136 (618)
Q Consensus 57 v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 136 (618)
++.+++++++++ .+|..+. ++|++|++++|.+. +..|..+.++++|++|++++|.+++..|..
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS--------------ELRKDDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC--------------EECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC--------------ccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence 344555555555 3344332 45555666555553 122334555555555555555555555555
Q ss_pred ccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccE
Q 038393 137 IGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQW 216 (618)
Q Consensus 137 ~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 216 (618)
|+++++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++.
T Consensus 98 ~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~------------- 161 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN------------- 161 (332)
T ss_dssp STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-------------
T ss_pred hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-------------
Confidence 555555555555555554 3343333 455555555555554433444555555555555554431
Q ss_pred EEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeeccc
Q 038393 217 LDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNN 296 (618)
Q Consensus 217 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 296 (618)
.+..+..+..+ +|+.|++++|+++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 162 --------~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 162 --------SGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp --------GGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred --------CCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 11344445455 6777777777776 455544 3678888888888877777778888888888888888
Q ss_pred ccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCc
Q 038393 297 FSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIP 376 (618)
Q Consensus 297 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 376 (618)
+.+..+..+..+++|+.|++++|.++.+| ..+..+++|++|++++|++++..+..+.....
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~----------------- 289 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF----------------- 289 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCCCBCC--TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-----------------
T ss_pred CCcCChhHhhCCCCCCEEECCCCcCeecC--hhhhcCccCCEEECCCCCCCccChhHcccccc-----------------
Confidence 88777777888888888888888888777 45778888888888888888776665543310
Q ss_pred hhhhcccccceeeeCCcccc--cccCccccccCCCceEEccccc
Q 038393 377 EEISNLTNLIAIYLGGNKLN--GTIPITLGKLQKLQLLSFEDNQ 418 (618)
Q Consensus 377 ~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~ 418 (618)
......|+.|++++|.+. +..+..|..+++|+.+++++|+
T Consensus 290 --~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 --GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred --ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 012456777777777776 5566677778888888887774
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=9.5e-32 Score=270.46 Aligned_cols=251 Identities=27% Similarity=0.355 Sum_probs=167.4
Q ss_pred EEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcc
Q 038393 57 VTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKE 136 (618)
Q Consensus 57 v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 136 (618)
++.+++++++++ .+|..+. +.|++|++++|.++ +..+..+.++++|++|++++|.+++..|..
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~--------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT--------------EIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC--------------CBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC--------------EeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 345666667776 4555454 67788888887774 223345677777777777777777666777
Q ss_pred ccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccE
Q 038393 137 IGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQW 216 (618)
Q Consensus 137 ~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 216 (618)
|+.+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+...
T Consensus 96 ~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------ 160 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS------------ 160 (330)
T ss_dssp TTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG------------
T ss_pred hcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc------------
Confidence 777777777777777776 4555443 5777777777777765555566666666666666665421
Q ss_pred EEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeeccc
Q 038393 217 LDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNN 296 (618)
Q Consensus 217 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 296 (618)
+..+..+..+++|++|++++|.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 161 ---------~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 161 ---------GIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp ---------GBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred ---------CcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 123344455566666666666665 444433 3567777777777776666677777777777777777
Q ss_pred ccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhh
Q 038393 297 FSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAI 354 (618)
Q Consensus 297 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~ 354 (618)
+++..+..+..+++|+.|++++|.++.+| ..+..+++|++|++++|++++..+..+
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSCCSSCC--TTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CceeChhhccCCCCCCEEECCCCcCccCC--hhhccCCCcCEEECCCCcCCccChhhc
Confidence 77666666777777777777777777666 456677777777777777776655444
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3e-35 Score=310.69 Aligned_cols=361 Identities=21% Similarity=0.218 Sum_probs=191.1
Q ss_pred CcEEEEEcCCCCCcccCCcc-ccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccC
Q 038393 55 HRVTALNISGLNLTGTIPSE-LGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTI 133 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 133 (618)
.+++.|++++++++...... +..+++|++|++++|.+.+.. ...++..+..+++|++|+|++|.+++..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~----------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 72 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR----------CKDISSALRVNPALAELNLRSNELGDVG 72 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH----------HHHHHHHHHTCTTCCEEECTTCCCHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHH----------HHHHHHHHHhCCCcCEEeCCCCcCChHH
Confidence 36788888888887654443 677888888888888774110 0134556667777888888877776544
Q ss_pred Cccc-cCCC----CCcEEEeecccccc----ccCcccCCCCCCCEEecccCcCcccCCcccc-----CCCCCCEEEeecc
Q 038393 134 PKEI-GNVT----KLIGLYLRGNQLQG----EIPEELGNLAELEELWLQNNFLTGTIPSSIF-----NLSSLSILDLSVN 199 (618)
Q Consensus 134 ~~~~-~~l~----~L~~L~L~~n~i~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n 199 (618)
+..+ ..++ +|++|+|++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|
T Consensus 73 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 73 VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 4333 2344 57777777777663 3466666667777777777766543333222 1234455554444
Q ss_pred cCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhh----cCCCCcEEEccCCcccc
Q 038393 200 NLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCN----NFPFLEELYLSKNMFYG 275 (618)
Q Consensus 200 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----~l~~L~~L~Ls~n~l~~ 275 (618)
.+++.... .++..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.+++
T Consensus 153 ~l~~~~~~-------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 153 SLSAASCE-------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp CCBGGGHH-------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred CCCHHHHH-------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 44321100 11333344566666666666655332322222 23466777777666654
Q ss_pred c----CCccCCCCCCCcEEEeecccccccC-----CccccCCCCCCEEEcCCCCCccCc---cccccCCCCCCCEEEccc
Q 038393 276 E----IPSDLANCSYLRILVLQFNNFSGAI-----PKEIGNLTKLEKLDLQFNRLRELS---FLSSLSNCKYLKYFSLSN 343 (618)
Q Consensus 276 ~----~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~~~~L~~L~ls~ 343 (618)
. ++..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.++... ....+..+++|++|++++
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 2 2444556666777777777665432 222234667777777777766521 113455567777777777
Q ss_pred ccCccccchhhhhcc----ccccEEEeeecccccC----CchhhhcccccceeeeCCcccccccCccccc-----cCCCc
Q 038393 344 NLLDGILPRAIGNLS----QSIEEFWIVSCNISGG----IPEEISNLTNLIAIYLGGNKLNGTIPITLGK-----LQKLQ 410 (618)
Q Consensus 344 n~l~~~~~~~~~~~~----~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~ 410 (618)
|.+++..+..+.... +++++|++++|.+.+. ++..+..+++|+.|++++|.+.+..+..+.. .++|+
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceE
Confidence 777655544444321 1344444444433332 2233334444555555555444333222221 33444
Q ss_pred eEEcccccccc----CCchhhhcCCCCCeEEcCCCcce
Q 038393 411 LLSFEDNQLEG----SIPNDLCRLAALFQLDLGGNMLS 444 (618)
Q Consensus 411 ~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~ 444 (618)
+|++++|++++ .++..+..+++|++|++++|+++
T Consensus 374 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred EEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 44444444443 33334444444444444444444
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.5e-34 Score=305.40 Aligned_cols=355 Identities=20% Similarity=0.157 Sum_probs=201.3
Q ss_pred CCCCEEeccCccccccCCcc-ccCCCCCcEEEeecccccc----ccCcccCCCCCCCEEecccCcCcccCCcccc-CCC-
Q 038393 117 KRLRNISLSLNDFSGTIPKE-IGNVTKLIGLYLRGNQLQG----EIPEELGNLAELEELWLQNNFLTGTIPSSIF-NLS- 189 (618)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~- 189 (618)
++|++|+|++|+++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788888888876544333 6778888888888888774 3456677778888888888887654433332 233
Q ss_pred ---CCCEEEeecccCccc-----CCCCCCCCCccEEEcccCcCcccCCccC-----CCCCCCcEEeccCccCcccC----
Q 038393 190 ---SLSILDLSVNNLTGT-----IPYAGNLFQLQWLDLSDNQLSGSFPSFK-----FKMPRLQVLDLSVNGLSGEL---- 252 (618)
Q Consensus 190 ---~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~---- 252 (618)
+|++|++++|.+... ...+..+++|++|++++|.+++..+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 566777776666521 2223445556666666655543222111 12345555555555555322
Q ss_pred chhhhhcCCCCcEEEccCCcccccCCccCC-----CCCCCcEEEeeccccccc----CCccccCCCCCCEEEcCCCCCcc
Q 038393 253 PANFCNNFPFLEELYLSKNMFYGEIPSDLA-----NCSYLRILVLQFNNFSGA----IPKEIGNLTKLEKLDLQFNRLRE 323 (618)
Q Consensus 253 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 323 (618)
+..+ ..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+
T Consensus 163 ~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVL-RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHH-hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 1111 1245555555555554433222221 133455555555554432 23334444455555555544443
Q ss_pred Ccc----ccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCccccccc
Q 038393 324 LSF----LSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTI 399 (618)
Q Consensus 324 ~~~----~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 399 (618)
... ...+..+++|++|++++|.+++.... .++..+..+++|++|++++|.+.+..
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCG---------------------DLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH---------------------HHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH---------------------HHHHHHhhCCCcceEECCCCCCchHH
Confidence 210 01111234444444444444432111 13445566777888888888776554
Q ss_pred Cccccc-----cCCCceEEccccccccC----CchhhhcCCCCCeEEcCCCcceeccchhhhc-----ccCCCceecCCC
Q 038393 400 PITLGK-----LQKLQLLSFEDNQLEGS----IPNDLCRLAALFQLDLGGNMLSGFIPACFGN-----LTYLKKLNLGSN 465 (618)
Q Consensus 400 ~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n 465 (618)
+..+.. .++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 444332 25788888888887754 3455666788888888888877665554443 567888888888
Q ss_pred CCcC-----CCccccccccCcEEeCcCCcceec
Q 038393 466 QLTS-----TSSTLWNIKYILYLNLSSNSFTGS 493 (618)
Q Consensus 466 ~l~~-----~~~~~~~~~~L~~L~ls~n~l~~~ 493 (618)
.++. .+..+..+++|++|++++|++++.
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 8773 355566677888888888887643
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=8.3e-31 Score=263.58 Aligned_cols=275 Identities=23% Similarity=0.239 Sum_probs=135.3
Q ss_pred CCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcc
Q 038393 141 TKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLS 220 (618)
Q Consensus 141 ~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~ 220 (618)
++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|+++..+... .++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~--~~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh--cccccEEECC
Confidence 34455555555554444444555555555555555555444555555555555555555554322221 1456666666
Q ss_pred cCcCcccCCccCCCCCCCcEEeccCccCcc--cCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeeccccc
Q 038393 221 DNQLSGSFPSFKFKMPRLQVLDLSVNGLSG--ELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFS 298 (618)
Q Consensus 221 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 298 (618)
+|.+++..+..+..+++|+.|++++|.+.. ..+..+ ..+++|++|++++|.++. +|..+. ++|++|++++|.++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc-cCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence 666665555556667777777777776642 223222 336666666666666653 333222 55566666666555
Q ss_pred ccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchh
Q 038393 299 GAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEE 378 (618)
Q Consensus 299 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 378 (618)
+..+..+..+++|+.|++++|.++.++. ..+..+++|++|++++|+++ .+|..
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~--------------------------~lp~~ 258 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV--------------------------KVPGG 258 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCS--------------------------SCCTT
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCc--------------------------cCChh
Confidence 5555555555555555555555444332 22333333444444433333 12223
Q ss_pred hhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCccee--ccchhhhcccC
Q 038393 379 ISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSG--FIPACFGNLTY 456 (618)
Q Consensus 379 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~ 456 (618)
+..+++|++|++++|++++..+..|.... .......++.+++++|++.. +.|..|..+.+
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~ 320 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 320 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccc
Confidence 33444444444444444433333332110 00012455566666666542 34556666666
Q ss_pred CCceecCCCC
Q 038393 457 LKKLNLGSNQ 466 (618)
Q Consensus 457 L~~L~l~~n~ 466 (618)
++.+++++|+
T Consensus 321 l~~l~L~~N~ 330 (330)
T 1xku_A 321 RAAVQLGNYK 330 (330)
T ss_dssp GGGEEC----
T ss_pred eeEEEecccC
Confidence 6666666653
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=3.8e-31 Score=266.24 Aligned_cols=288 Identities=25% Similarity=0.290 Sum_probs=157.6
Q ss_pred CCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEee
Q 038393 118 RLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLS 197 (618)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 197 (618)
+++.++++++.++ .+|..+. ++|+.|++++|.+.+..|..|..+++|++|++++|.+++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4666666666665 4454442 566777777777765556667777777777777777776666667777777777777
Q ss_pred cccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcc--cCchhhhhcCCCCcEEEccCCcccc
Q 038393 198 VNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSG--ELPANFCNNFPFLEELYLSKNMFYG 275 (618)
Q Consensus 198 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~ 275 (618)
+|++...++... ++|++|++++|.+++..+..+..+++|+.|++++|.++. ..+..+ ..+ +|++|++++|.+++
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF-DGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS-CSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc-cCC-ccCEEECcCCCCCc
Confidence 776664333222 567777777777765555566677777777777777752 222222 223 56666666666553
Q ss_pred cCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhh
Q 038393 276 EIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIG 355 (618)
Q Consensus 276 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 355 (618)
+|..+. ++|++|++++|.+++..+..+..+++|+ +|++++|++++..+..+
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~-------------------------~L~L~~N~l~~~~~~~~- 237 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLY-------------------------RLGLGHNQIRMIENGSL- 237 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCS-------------------------CCBCCSSCCCCCCTTGG-
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCC-------------------------EEECCCCcCCcCChhHh-
Confidence 333222 4555555555555544444444444444 44444444443333222
Q ss_pred hccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhc------
Q 038393 356 NLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCR------ 429 (618)
Q Consensus 356 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------ 429 (618)
..+++|+.|++++|++. .+|..+..+++|++|++++|++++..+..|..
T Consensus 238 ------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 238 ------------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp ------------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred ------------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 22333444444444443 33333444444444444444444433333332
Q ss_pred CCCCCeEEcCCCcce--eccchhhhcccCCCceecCCCC
Q 038393 430 LAALFQLDLGGNMLS--GFIPACFGNLTYLKKLNLGSNQ 466 (618)
Q Consensus 430 l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 466 (618)
...|+.|++++|++. ...+..|..+++|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 244566666666655 4455566666666666666653
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.3e-33 Score=296.23 Aligned_cols=312 Identities=19% Similarity=0.157 Sum_probs=205.8
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEc
Q 038393 262 FLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSL 341 (618)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~l 341 (618)
+|++|+|++|.+++..|..|..+++|++|++++|.+++..| +..+++|+.|++++|.++.++. .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~------~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE------CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC------CCCcCEEEC
Confidence 56666666666665555566666666666666666655443 5666666666666666655542 256666777
Q ss_pred ccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCcccc-ccCCCceEEccccccc
Q 038393 342 SNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLG-KLQKLQLLSFEDNQLE 420 (618)
Q Consensus 342 s~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~ 420 (618)
++|.+++..+..+ ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|+|++|.++
T Consensus 107 ~~N~l~~~~~~~l----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEECCC----SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcccc----CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 7766666555432 2567777777777776677778888899999999999887777775 7889999999999988
Q ss_pred cCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCcce-ecCCCCCc
Q 038393 421 GSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFT-GSLPLGIG 499 (618)
Q Consensus 421 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~-~~~p~~l~ 499 (618)
+..+ +..+++|+.|+|++|.+++.++. +..+++|+.|++++|.++++|..+..++.|+.|++++|++. +..|..+.
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 6532 33588999999999999876554 88889999999999999988888888899999999999987 56666677
Q ss_pred ccccceeeccccchhhhhhhcccccccccccccCCcceeEEEEec---CCceEEEEEeec--ccccchhhHHHHHHHhhc
Q 038393 500 NLKVLVQIDLSMNNFSELFQATNEFSANNLIGRGGIGSVYKARIQ---DGTEVAVKVFNL--QYKEAFKSFDIECDMMKR 574 (618)
Q Consensus 500 ~l~~L~~l~l~~n~l~~l~~at~~~~~~~~~g~g~~g~vy~~~~~---~g~~vavK~l~~--~~~~~~~~f~~e~~~l~~ 574 (618)
.++.|+.++++.+.. + .....+. +.....+..+.++.+... .++.+++|+... ....+.++|..|++.+++
T Consensus 260 ~l~~L~~l~~~~~~~--~-~~~~~~~-c~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~eF~~Eve~L~~ 335 (487)
T 3oja_A 260 KNQRVQTVAKQTVKK--L-TGQNEEE-CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQ 335 (487)
T ss_dssp TCHHHHHHHHHHHHH--H-TSSSSCC-CSSTTCEEETTEEECCCSCHHHHHHHHHHHHHHCSCC-----CHHHHHHHHHH
T ss_pred hCCCCcEEecccccc--c-cCCCccc-ccCCccccccccccccccchhhhHHHHHHHHhhhhcccccHHHHHHHHHHHhc
Confidence 777777777652210 0 0011111 001111111111111110 011223332211 113346789999999999
Q ss_pred ccCCccceEeeeeecCCe
Q 038393 575 IRHRNLIKIISSCSNDDF 592 (618)
Q Consensus 575 l~h~nlv~l~~~~~~~~~ 592 (618)
++|+|+|+++|||.....
T Consensus 336 i~HrNLV~L~gyC~s~~~ 353 (487)
T 3oja_A 336 ARQREIDALKEQYRTVID 353 (487)
T ss_dssp HHHHHHHHHHHHTCCCCC
T ss_pred ccccchhhHHHHhcChHH
Confidence 999999999999987654
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=6.1e-31 Score=261.86 Aligned_cols=248 Identities=26% Similarity=0.394 Sum_probs=157.7
Q ss_pred CCccEEEcccCcCcc--cCCccCCCCCCCcEEeccC-ccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCc
Q 038393 212 FQLQWLDLSDNQLSG--SFPSFKFKMPRLQVLDLSV-NGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLR 288 (618)
Q Consensus 212 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 288 (618)
.++++|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356666666666665 5666666666777777763 6666666665543 66677777777776666666666677777
Q ss_pred EEEeecccccccCCccccCCCCCCEEEcCCCCCc-cCccccccCCCC-CCCEEEcccccCccccchhhhhccccccEEEe
Q 038393 289 ILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLR-ELSFLSSLSNCK-YLKYFSLSNNLLDGILPRAIGNLSQSIEEFWI 366 (618)
Q Consensus 289 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~~~-~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l 366 (618)
+|++++|.+.+.+|..+..+++|++|++++|.++ .+| ..+..++ +|++|++++|++++..|..+..+. |++|++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~L 204 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP--DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDL 204 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC--GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEEC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC--HHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEEC
Confidence 7777777776666666666666666666666665 343 4455555 667777777776666666665552 666666
Q ss_pred eecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceec
Q 038393 367 VSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGF 446 (618)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 446 (618)
++|.+.+..|..+..+++|+.|++++|++.+.++. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 66666655566666666666666666666644443 45566666666666666666666666666666666666666655
Q ss_pred cchhhhcccCCCceecCCCC
Q 038393 447 IPACFGNLTYLKKLNLGSNQ 466 (618)
Q Consensus 447 ~~~~~~~l~~L~~L~l~~n~ 466 (618)
+|.. ..+++|+.+++++|+
T Consensus 284 ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSS
T ss_pred CCCC-ccccccChHHhcCCC
Confidence 5554 555666666666665
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=264.43 Aligned_cols=286 Identities=22% Similarity=0.202 Sum_probs=236.4
Q ss_pred CCCCCCCcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCC
Q 038393 36 WNTSSSVCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSN 115 (618)
Q Consensus 36 w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~ 115 (618)
|......|.|.|+ |+ .++++++ .+|..+. ++|++|++++|.+. +..+..+.+
T Consensus 23 ~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~--------------~~~~~~~~~ 74 (353)
T 2z80_A 23 SNQASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRIT--------------YISNSDLQR 74 (353)
T ss_dssp ----CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCC--------------EECTTTTTT
T ss_pred CCccCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCc--------------ccCHHHhcc
Confidence 5556677888876 64 4667777 4565554 58999999999985 233446889
Q ss_pred CCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCC-ccccCCCCCCEE
Q 038393 116 CKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIP-SSIFNLSSLSIL 194 (618)
Q Consensus 116 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L 194 (618)
+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+ ..+.++++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 9999999999999998888999999999999999999996555559999999999999999985444 478999999999
Q ss_pred Eeeccc-CcccCC-CCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCc
Q 038393 195 DLSVNN-LTGTIP-YAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNM 272 (618)
Q Consensus 195 ~l~~n~-l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 272 (618)
++++|. +....+ .+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+...+++|++|++++|.
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCB
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCc
Confidence 999994 665544 3478999999999999999988999999999999999999997 7777777778999999999999
Q ss_pred ccccCCccC---CCCCCCcEEEeecccccc----cCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEccccc
Q 038393 273 FYGEIPSDL---ANCSYLRILVLQFNNFSG----AIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNL 345 (618)
Q Consensus 273 l~~~~~~~l---~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~ 345 (618)
+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|+.|++++|+++.+|. ..+..+++|++|++++|+
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCCC
Confidence 987655544 346778999999998876 367778899999999999999998874 446889999999999999
Q ss_pred Cccccc
Q 038393 346 LDGILP 351 (618)
Q Consensus 346 l~~~~~ 351 (618)
+++..|
T Consensus 313 ~~~~~~ 318 (353)
T 2z80_A 313 WDCSCP 318 (353)
T ss_dssp BCCCHH
T ss_pred ccCcCC
Confidence 987654
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.1e-32 Score=298.40 Aligned_cols=442 Identities=13% Similarity=0.102 Sum_probs=199.1
Q ss_pred CcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCC---CcCCcccccCCcccccCCccCCCCCC
Q 038393 42 VCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFS---GSIPASIFNINMFHGKIPSTLSNCKR 118 (618)
Q Consensus 42 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~---~~~~~~~~~~n~~~~~~p~~l~~l~~ 118 (618)
|+.|.++.+... ..+.+..+ ....++..+..+++|++|+++++... +.+|..+.... ...++.....+++
T Consensus 41 ck~W~~~~~~~~----~~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 41 CRRWFKIDSETR----EHVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV--TPWVTEISNNLRQ 113 (592)
T ss_dssp CHHHHHHHHHHC----CEEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBC--HHHHHHHHHHCTT
T ss_pred hHHHHHhhhccc----cEEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccc--hHHHHHHHhhCCC
Confidence 347988854321 22333322 22233445677889999999886431 12222111000 0011122236788
Q ss_pred CCEEeccCccccccCCccccCC--CCCcEEEeeccc-ccc-ccCcccCCCCCCCEEecccCcCcccC----CccccCCCC
Q 038393 119 LRNISLSLNDFSGTIPKEIGNV--TKLIGLYLRGNQ-LQG-EIPEELGNLAELEELWLQNNFLTGTI----PSSIFNLSS 190 (618)
Q Consensus 119 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~-i~~-~~p~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~ 190 (618)
|++|+|++|.+++..+..+... .+|++|+|++|. +.. .++.....+++|++|+|++|.+++.. +..+..+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 8888888887776666666553 348888888776 221 12222346778888888888766542 223345666
Q ss_pred CCEEEeecccCccc----CC-CCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcE
Q 038393 191 LSILDLSVNNLTGT----IP-YAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEE 265 (618)
Q Consensus 191 L~~L~l~~n~l~~~----~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 265 (618)
|++|++++|.+.+. ++ ....+++|++|++++|.+.+ ++..+..+++|++|+++..... .+
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~------------ 258 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED--IG------------ 258 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC--TT------------
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccc--cc------------
Confidence 67777666665411 11 11234445555555544442 3333444444444444432111 00
Q ss_pred EEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEccccc
Q 038393 266 LYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNL 345 (618)
Q Consensus 266 L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~ 345 (618)
....+..+..+++|+.|+++++.. ..+|..+..+++|++|++++|.++.......+..+++|++|+++ +.
T Consensus 259 --------~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~ 328 (592)
T 3ogk_B 259 --------MPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NV 328 (592)
T ss_dssp --------CTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GG
T ss_pred --------hHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-Cc
Confidence 011222334444455554444321 12333444444555555555444322221223444555555554 22
Q ss_pred CccccchhhhhccccccEEEeee-----------cccccC-CchhhhcccccceeeeCCcccccccCccccc-cCCCceE
Q 038393 346 LDGILPRAIGNLSQSIEEFWIVS-----------CNISGG-IPEEISNLTNLIAIYLGGNKLNGTIPITLGK-LQKLQLL 412 (618)
Q Consensus 346 l~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L 412 (618)
+.+.....+....++|++|++.+ +.+++. ++.....+++|++|+++.|.+++..+..+.. +++|+.|
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEE
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEE
Confidence 22222222211112455555552 222221 1111233455555555444444443333332 4455555
Q ss_pred Ecc----ccccccC-----CchhhhcCCCCCeEEcCCCc--ceeccchhhhc-ccCCCceecCCCCCcCC--Cccccccc
Q 038393 413 SFE----DNQLEGS-----IPNDLCRLAALFQLDLGGNM--LSGFIPACFGN-LTYLKKLNLGSNQLTST--SSTLWNIK 478 (618)
Q Consensus 413 ~L~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~~~~ 478 (618)
+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+.. +++|+.|++++|+++.. +..+..++
T Consensus 409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 488 (592)
T 3ogk_B 409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP 488 (592)
T ss_dssp EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence 553 3344432 22223445555555554322 33333222222 44555555555554432 22223345
Q ss_pred cCcEEeCcCCcceec-CCCCCcccccceeeccccchhh
Q 038393 479 YILYLNLSSNSFTGS-LPLGIGNLKVLVQIDLSMNNFS 515 (618)
Q Consensus 479 ~L~~L~ls~n~l~~~-~p~~l~~l~~L~~l~l~~n~l~ 515 (618)
+|++|++++|.+++. .+.....+++|+.|++++|+++
T Consensus 489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 555555555554322 1122233445555555555443
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.9e-31 Score=290.81 Aligned_cols=400 Identities=15% Similarity=0.110 Sum_probs=251.8
Q ss_pred CCcEEEEEcCCCCC---cccCCcccc------------CCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCC-CC
Q 038393 54 THRVTALNISGLNL---TGTIPSELG------------NLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSN-CK 117 (618)
Q Consensus 54 ~~~v~~L~L~~~~l---~~~~~~~~~------------~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~-l~ 117 (618)
.++++.|+++++.. .+.+|..++ .+++|++|+|++|.+.+ ..+..+.. ++
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~--------------~~~~~l~~~~~ 137 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSD--------------LDLDRLAKARA 137 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH--------------HHHHHHHHHHG
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecH--------------HHHHHHHHhcc
Confidence 35699999988542 123333333 78999999999998742 22333443 34
Q ss_pred -CCCEEeccCcc-ccc-cCCccccCCCCCcEEEeeccccccc----cCcccCCCCCCCEEecccCcCc----ccCCcccc
Q 038393 118 -RLRNISLSLND-FSG-TIPKEIGNVTKLIGLYLRGNQLQGE----IPEELGNLAELEELWLQNNFLT----GTIPSSIF 186 (618)
Q Consensus 118 -~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~i~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~~~~l~ 186 (618)
+|++|+|++|. ++. .++..+..+++|++|+|++|.+.+. ++..+..+++|++|++++|.++ +.++..+.
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 49999999987 221 1233345789999999999998765 3344567899999999999987 34445566
Q ss_pred CCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCc---ccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCC
Q 038393 187 NLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLS---GSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFL 263 (618)
Q Consensus 187 ~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 263 (618)
++++|++|++++|.+.+.......+++|++|+++..... ...+..+..+++|+.|+++++... .+|..+ ..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILF-PFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGG-GGGGGC
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHH-hhcCCC
Confidence 889999999999998876555577899999999864332 234455677889999999886443 555544 447899
Q ss_pred cEEEccCCcccccCC-ccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCC-----------CCCccCccccccC
Q 038393 264 EELYLSKNMFYGEIP-SDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQF-----------NRLRELSFLSSLS 331 (618)
Q Consensus 264 ~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~~~~~l~ 331 (618)
++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++++ +.++.........
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 999999998765433 3357889999999994433333344446678899998883 5555432223344
Q ss_pred CCCCCCEEEcccccCccccchhhhhccccccEEEeee----cccccC-----CchhhhcccccceeeeCCcc--cccccC
Q 038393 332 NCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVS----CNISGG-----IPEEISNLTNLIAIYLGGNK--LNGTIP 400 (618)
Q Consensus 332 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~----~~~~~~-----~~~~~~~l~~L~~L~L~~n~--i~~~~~ 400 (618)
.+++|++|+++.|.+++..+..+....++|+.|++.. +.+++. ++..+..+++|+.|++++|. +++..+
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 5788888888888887776666665333677777752 333331 22234445555666554322 333322
Q ss_pred cccc-ccCCCceEEcccccccc-CCchhhhcCCCCCeEEcCCCcceecc-chhhhcccCCCceecCCCCCcC
Q 038393 401 ITLG-KLQKLQLLSFEDNQLEG-SIPNDLCRLAALFQLDLGGNMLSGFI-PACFGNLTYLKKLNLGSNQLTS 469 (618)
Q Consensus 401 ~~~~-~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 469 (618)
..+. .+++|++|++++|++++ .++..+..+++|+.|++++|.+++.. +.....+++|+.|++++|+++.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 2222 24555555555555543 12223344555555555555544321 2223344555555555555443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.6e-28 Score=241.49 Aligned_cols=237 Identities=21% Similarity=0.263 Sum_probs=155.4
Q ss_pred CCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCC-CccCccccccCCCCCCCEEE
Q 038393 262 FLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNR-LRELSFLSSLSNCKYLKYFS 340 (618)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~~~~L~~L~ 340 (618)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +..++. ..+..+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCEEE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcCCCEEE
Confidence 44444444444443333344444444444444444444334444444444444444443 333321 3344444444444
Q ss_pred cccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccc
Q 038393 341 LSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLE 420 (618)
Q Consensus 341 ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 420 (618)
+++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|+++
T Consensus 112 l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 444444444444444443 4555555555554444455777888999999999998777777888999999999999999
Q ss_pred cCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCcceecCCCCCcc
Q 038393 421 GSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFTGSLPLGIGN 500 (618)
Q Consensus 421 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~ 500 (618)
+..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.+...+...+++.+..+.+.+....|..+..
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCC
Confidence 88888999999999999999999988888899999999999999999887665555567777778888888777766543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.8e-28 Score=242.36 Aligned_cols=251 Identities=25% Similarity=0.292 Sum_probs=169.1
Q ss_pred CcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCc-cCCCCCCCC
Q 038393 42 VCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPS-TLSNCKRLR 120 (618)
Q Consensus 42 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~-~l~~l~~L~ 120 (618)
.|.|.++.|.. ++++ .+|..+. ++|++|++++|.+. .+|. .+.++++|+
T Consensus 6 ~C~~~~l~c~~------------~~l~-~ip~~~~--~~l~~L~L~~n~l~---------------~i~~~~~~~l~~L~ 55 (306)
T 2z66_A 6 SCSGTEIRCNS------------KGLT-SVPTGIP--SSATRLELESNKLQ---------------SLPHGVFDKLTQLT 55 (306)
T ss_dssp EEETTEEECCS------------SCCS-SCCSCCC--TTCCEEECCSSCCC---------------CCCTTTTTTCTTCS
T ss_pred eeCCCEEEcCC------------CCcc-cCCCCCC--CCCCEEECCCCccC---------------ccCHhHhhccccCC
Confidence 37888887753 2333 2333332 46677777777664 2222 356667777
Q ss_pred EEeccCcccccc--CCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCC-ccccCCCCCCEEEee
Q 038393 121 NISLSLNDFSGT--IPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIP-SSIFNLSSLSILDLS 197 (618)
Q Consensus 121 ~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~ 197 (618)
+|++++|.++.. .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 56 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 56 KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp EEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred EEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence 777777766532 2455566677777777777766 455566677777777777777765443 456677777777777
Q ss_pred cccCcccCCCC-CCCCCccEEEcccCcCcc-cCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccc
Q 038393 198 VNNLTGTIPYA-GNLFQLQWLDLSDNQLSG-SFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYG 275 (618)
Q Consensus 198 ~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 275 (618)
+|.+.+..+.. ..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTSCCSB
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEECCCCccCc
Confidence 77776555443 566777777777777765 466677777778888888777775444444 347778888888888776
Q ss_pred cCCccCCCCCCCcEEEeecccccccCCccccCCC-CCCEEEcCCCCCccC
Q 038393 276 EIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLT-KLEKLDLQFNRLREL 324 (618)
Q Consensus 276 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~ 324 (618)
..+..+..+++|++|++++|.+.+..|..+..++ +|+.|++++|.+...
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 6666677788888888888888877777777774 888888888887754
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.2e-28 Score=244.74 Aligned_cols=272 Identities=18% Similarity=0.213 Sum_probs=181.5
Q ss_pred CCCCCcccCCCCC--CCCCcceeeeeeCCCCCcEEEEEcCCCCCccc----CCcc--ccCCCCCCEEeCCCCCCCCcCCc
Q 038393 26 EDPANFLARNWNT--SSSVCNWTGVTCDVRTHRVTALNISGLNLTGT----IPSE--LGNLSSLQTLDLSFNWFSGSIPA 97 (618)
Q Consensus 26 ~~~~~~~~~~w~~--~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~----~~~~--~~~l~~L~~L~Ls~n~~~~~~~~ 97 (618)
.++...+.. |.. ..++|.|.++-|..... .-..+...|. .+.. -...+++++|+|++|.+.
T Consensus 26 ~~~~~aLl~-~k~~~~~~~~~~~~~w~~~~~~-----~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~----- 94 (328)
T 4fcg_A 26 RPYHDVLSQ-WQRHYNADRNRWHSAWRQANSN-----NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP----- 94 (328)
T ss_dssp CCHHHHHHH-HHHHHHHCCTTHHHHHHHHTTT-----CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-----
T ss_pred chHHHHHHH-HHHhccCCchhhhhhhcccccc-----cccccccCCcchhhhHHHHhcccccceeEEEccCCCch-----
Confidence 344445555 754 35788888777632111 0011112221 1111 134588999999999985
Q ss_pred ccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcC
Q 038393 98 SIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFL 177 (618)
Q Consensus 98 ~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l 177 (618)
.+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|++++|.+
T Consensus 95 ----------~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 95 ----------QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162 (328)
T ss_dssp ----------SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred ----------hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence 56777888999999999999999 88999999999999999999998 7899999999999999999988
Q ss_pred cccCCccccC---------CCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccC
Q 038393 178 TGTIPSSIFN---------LSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGL 248 (618)
Q Consensus 178 ~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 248 (618)
.+.+|..+.. +++|++|++++|.++..+..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTT
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcc
Confidence 8888887664 667777777777666433334556666666666666663 444455666666666666666
Q ss_pred cccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCc
Q 038393 249 SGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLR 322 (618)
Q Consensus 249 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 322 (618)
.+.+|..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus 242 ~~~~p~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 242 LRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCCCTTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhhHHHhcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 5555554433 566666666666665566656666666666666666666666666666666666655554433
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.3e-28 Score=241.90 Aligned_cols=248 Identities=22% Similarity=0.232 Sum_probs=180.8
Q ss_pred CEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccc--cCc
Q 038393 82 QTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGE--IPE 159 (618)
Q Consensus 82 ~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~p~ 159 (618)
+.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|+|++|.++.. .+.
T Consensus 10 ~~l~c~~~~l~---------------~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 10 TEIRCNSKGLT---------------SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp TEEECCSSCCS---------------SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred CEEEcCCCCcc---------------cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 67888888775 3444332 6899999999999865555688999999999999988733 366
Q ss_pred ccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCC--CCCCCCCccEEEcccCcCcccCCccCCCCCC
Q 038393 160 ELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIP--YAGNLFQLQWLDLSDNQLSGSFPSFKFKMPR 237 (618)
Q Consensus 160 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 237 (618)
.+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+++..+..+..+++
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 151 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151 (306)
T ss_dssp HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT
T ss_pred ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC
Confidence 7778899999999999887 466678888999999999998876654 4467788888888888887777777777778
Q ss_pred CcEEeccCccCcc-cCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEc
Q 038393 238 LQVLDLSVNGLSG-ELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDL 316 (618)
Q Consensus 238 L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 316 (618)
|++|++++|.+++ .+|..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 152 L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp CCEEECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCEEECCCCccccccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 8888888777765 234433 34677777777777777666667777777777777777777665556666777777777
Q ss_pred CCCCCccCccccccCCC-CCCCEEEcccccCccc
Q 038393 317 QFNRLRELSFLSSLSNC-KYLKYFSLSNNLLDGI 349 (618)
Q Consensus 317 ~~n~l~~~~~~~~l~~~-~~L~~L~ls~n~l~~~ 349 (618)
++|.+...+. ..+..+ ++|++|++++|++++.
T Consensus 231 ~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 231 SLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTSCCCBCSS-SSCCCCCTTCCEEECTTCCEECS
T ss_pred CCCCCcccCH-HHHHhhhccCCEEEccCCCeecc
Confidence 7777665543 344455 3666677766666543
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.6e-30 Score=258.85 Aligned_cols=204 Identities=26% Similarity=0.272 Sum_probs=127.3
Q ss_pred CCCCCcEEEeeccccccccCccc--CCCCCCCEEecccCcCcccCCccccCC-----CCCCEEEeecccCcccCC-CCCC
Q 038393 139 NVTKLIGLYLRGNQLQGEIPEEL--GNLAELEELWLQNNFLTGTIPSSIFNL-----SSLSILDLSVNNLTGTIP-YAGN 210 (618)
Q Consensus 139 ~l~~L~~L~L~~n~i~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~-~~~~ 210 (618)
++++|++|+|++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+ .++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 44555555555555544444443 4455555555555555443 4444443 455555555555544442 2244
Q ss_pred CCCccEEEcccCcCccc--CCccC--CCCCCCcEEeccCccCcc--cCchhhhhcCCCCcEEEccCCcccccCC-ccCCC
Q 038393 211 LFQLQWLDLSDNQLSGS--FPSFK--FKMPRLQVLDLSVNGLSG--ELPANFCNNFPFLEELYLSKNMFYGEIP-SDLAN 283 (618)
Q Consensus 211 l~~L~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~ 283 (618)
+++|++|++++|++.+. .+..+ ..+++|++|++++|++++ .++..++..+++|++|++++|.+++..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 55555555555554432 12222 566777777777777762 3344555557888888888888877664 45666
Q ss_pred CCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccc
Q 038393 284 CSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGI 349 (618)
Q Consensus 284 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~ 349 (618)
+++|++|++++|.++ .+|..+. ++|+.|++++|+++.+| . +..+++|++|++++|++++.
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p--~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNP--S-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCC--C-TTTSCEEEEEECTTCTTTCC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCCh--h-HhhCCCCCEEeccCCCCCCC
Confidence 788888888888887 5666555 78888888888888875 2 67788888899998888753
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.3e-28 Score=259.56 Aligned_cols=290 Identities=26% Similarity=0.314 Sum_probs=198.7
Q ss_pred cccCCCCCCCCCcceeeeee------CCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCc
Q 038393 31 FLARNWNTSSSVCNWTGVTC------DVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINM 104 (618)
Q Consensus 31 ~~~~~w~~~~~~c~w~gv~c------~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~ 104 (618)
.+.. |....++|.|.|..| ......++.|++++++++ .+|..+. ++|++|++++|.++
T Consensus 11 ~w~~-W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~------------ 74 (622)
T 3g06_A 11 VWSA-WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT------------ 74 (622)
T ss_dssp HHHH-HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS------------
T ss_pred HHHH-HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC------------
Confidence 3444 877788999976532 112235889999999998 6676665 79999999999885
Q ss_pred ccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCcc
Q 038393 105 FHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSS 184 (618)
Q Consensus 105 ~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 184 (618)
.+|. .+++|++|+|++|.+++ +|. .+++|++|+|++|.+++ +|. .+++|+.|++++|.+++ +|..
T Consensus 75 ---~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~ 139 (622)
T 3g06_A 75 ---SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL 139 (622)
T ss_dssp ---CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC
T ss_pred ---CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC
Confidence 3444 46889999999999884 554 67889999999999884 454 56788999999998885 5543
Q ss_pred ccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCc
Q 038393 185 IFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLE 264 (618)
Q Consensus 185 l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 264 (618)
+++|++|++++|++++.+. .+.+|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|.. +++|+
T Consensus 140 ---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~ 204 (622)
T 3g06_A 140 ---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLPTL----PSELY 204 (622)
T ss_dssp ---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCC----CTTCC
T ss_pred ---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCCCc----cchhh
Confidence 4788888888888875432 34678888888888774 34 34577888888888777 34432 46777
Q ss_pred EEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccc
Q 038393 265 ELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNN 344 (618)
Q Consensus 265 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n 344 (618)
.|++++|.++. +|. .+++|++|++++|.+++ +| ..+++|+.|++++|.++.+|. .+++|+.|++++|
T Consensus 205 ~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 205 KLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRN 271 (622)
T ss_dssp EEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSS
T ss_pred EEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCC
Confidence 77777777763 332 23667777777777764 33 345667777777777766652 4456666666666
Q ss_pred cCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccc
Q 038393 345 LLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGK 405 (618)
Q Consensus 345 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 405 (618)
+++ .+|..+..+++|+.|++++|++.+..+..+..
T Consensus 272 ~L~--------------------------~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 272 QLT--------------------------RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCC--------------------------SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CCC--------------------------cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 665 23344555556666666666666555554443
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.8e-28 Score=243.82 Aligned_cols=273 Identities=18% Similarity=0.181 Sum_probs=194.6
Q ss_pred cEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeec
Q 038393 215 QWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQF 294 (618)
Q Consensus 215 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~ 294 (618)
...+.+++.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 33555555555 3343332 46777777777776 34443334477777777777777776667777778888888888
Q ss_pred ccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccc-cCccccchhhhhccccccEEEeeeccccc
Q 038393 295 NNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNN-LLDGILPRAIGNLSQSIEEFWIVSCNISG 373 (618)
Q Consensus 295 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n-~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 373 (618)
|.+++..+..++.+++|++|++++|.++.++....+..+++|++|++++| .++...+..+..+. ++++|++++|.+.+
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQS 188 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC-CCCEEECCCCCcCc
Confidence 88776555557778888888888888887764346777888888888887 46666666777665 78888888888887
Q ss_pred CCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhh---cCCCCCeEEcCCCccee----c
Q 038393 374 GIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLC---RLAALFQLDLGGNMLSG----F 446 (618)
Q Consensus 374 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~~----~ 446 (618)
..|..+..+++|++|++++|++.......+..+++|+.|++++|++++..+..+. ....++.++++++.+++ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 7778888888888888888888655444455678888888888888765544333 35667778888877765 2
Q ss_pred cchhhhcccCCCceecCCCCCcCCCccc-cccccCcEEeCcCCccee
Q 038393 447 IPACFGNLTYLKKLNLGSNQLTSTSSTL-WNIKYILYLNLSSNSFTG 492 (618)
Q Consensus 447 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~ls~n~l~~ 492 (618)
+|..+..+++|+.|++++|+++.++..+ ..+++|++|++++|++.+
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 4667778888888888888888776554 677888888888887764
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.1e-27 Score=244.94 Aligned_cols=247 Identities=22% Similarity=0.231 Sum_probs=158.5
Q ss_pred EEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccc
Q 038393 58 TALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEI 137 (618)
Q Consensus 58 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 137 (618)
..++.++.+++ .+|..+. ++++.|+|++|.+. +..+..|.++++|++|+|++|.+++..+..|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~--------------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~ 108 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ--------------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC--------------EECTTTTSSCSSCCEEECCSSCCCEECGGGG
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC--------------eeCHHHhhCCCCCCEEECCCCcCCccChhhc
Confidence 34566667776 5565554 67888888888774 2344567777888888888888777767777
Q ss_pred cCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEE
Q 038393 138 GNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWL 217 (618)
Q Consensus 138 ~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 217 (618)
.++++|++|+|++|+++...+..|..+++|++|+|++|.++...+..|.++++|++|++++|...+.++
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----------- 177 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS----------- 177 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------
T ss_pred cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-----------
Confidence 778888888888887775555667777778888887777776666667777777777777643322222
Q ss_pred EcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccc
Q 038393 218 DLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNF 297 (618)
Q Consensus 218 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 297 (618)
+..+.++++|++|++++|.++ .+|. +..+++|++|+|++|.+++..+..|..+++|++|++++|.+
T Consensus 178 -----------~~~~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 178 -----------EGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp -----------TTTTTTCSSCCEEECTTSCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred -----------cchhhcccccCeecCCCCcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 223334444444444444444 3332 12355666666666666655566666666666666666666
Q ss_pred cccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCc
Q 038393 298 SGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLD 347 (618)
Q Consensus 298 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~ 347 (618)
++..+..|..+++|+.|+|++|+++.++. ..+..+++|+.|++++|++.
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSCCCCCCT-TTTSSCTTCCEEECCSSCEE
T ss_pred eEEChhhhcCCCCCCEEECCCCCCCccCh-hHhccccCCCEEEcCCCCcc
Confidence 66666666666666666666666666654 44566667777777776654
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.9e-27 Score=245.91 Aligned_cols=244 Identities=24% Similarity=0.236 Sum_probs=143.7
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcccc
Q 038393 59 ALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIG 138 (618)
Q Consensus 59 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 138 (618)
.++.++.+++ .+|..+. ++|++|+|++|.+. +..|..|.++++|++|+|++|.+++..+..|.
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~--------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 120 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ--------------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN 120 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC--------------EECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCc--------------eECHHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence 3445555565 3555443 57777777777763 23455566777777777777777766666777
Q ss_pred CCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeeccc-CcccCCC-CCCCCCccE
Q 038393 139 NVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNN-LTGTIPY-AGNLFQLQW 216 (618)
Q Consensus 139 ~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~-~~~l~~L~~ 216 (618)
++++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..|.++++|++|++++|. +....+. +..+++|++
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 77777777777777765555556777777777777777765555566667777777766633 3222221 244555555
Q ss_pred EEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeeccc
Q 038393 217 LDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNN 296 (618)
Q Consensus 217 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 296 (618)
|++++|.+++. | .+.. +++|++|+|++|.+++..|..|.++++|++|++++|.
T Consensus 201 L~L~~n~l~~~-~-~~~~-------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 201 LNLGMCNIKDM-P-NLTP-------------------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp EECTTSCCSSC-C-CCTT-------------------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccc-c-cccc-------------------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 55555555422 2 2333 4455555555555555555555555555555555555
Q ss_pred ccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCc
Q 038393 297 FSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLD 347 (618)
Q Consensus 297 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~ 347 (618)
+++..+..|..+++|+.|++++|+++.++. ..+..+++|+.|++++|++.
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCT-TSSTTCTTCCEEECCSSCEE
T ss_pred CceECHHHhcCCCCCCEEECCCCcCCccCh-HHhccccCCCEEEccCCCcC
Confidence 555555555555566666666665555543 34455566666666666554
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.7e-27 Score=247.51 Aligned_cols=237 Identities=21% Similarity=0.203 Sum_probs=185.5
Q ss_pred eeeeeeCCC---------CCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCC
Q 038393 45 WTGVTCDVR---------THRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSN 115 (618)
Q Consensus 45 w~gv~c~~~---------~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~ 115 (618)
|..|.|... ..+++.|+|++|++++..+..|.++++|++|+|++|.+. +..|..|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--------------~~~~~~~~~ 121 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR--------------QIEVGAFNG 121 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--------------EECTTTTTT
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC--------------CcChhhccC
Confidence 466777532 257999999999999999999999999999999999985 345677899
Q ss_pred CCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEeccc-CcCcccCCccccCCCCCCEE
Q 038393 116 CKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQN-NFLTGTIPSSIFNLSSLSIL 194 (618)
Q Consensus 116 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L 194 (618)
+++|++|+|++|.+++..+..|..+++|++|+|++|.+....+..|..+++|++|++++ +.+....+..|.++++|++|
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 201 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence 99999999999999988888899999999999999999977777899999999999999 45555555579999999999
Q ss_pred EeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCccc
Q 038393 195 DLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFY 274 (618)
Q Consensus 195 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 274 (618)
++++|.+++. +....+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+ ..+++|++|+|++|+++
T Consensus 202 ~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 202 NLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLS 279 (452)
T ss_dssp ECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCS
T ss_pred ECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCC
Confidence 9999999854 667889999999999999988777777777777777777777764333333 33555555555555555
Q ss_pred ccCCccCCCCCCCcEEEeecccc
Q 038393 275 GEIPSDLANCSYLRILVLQFNNF 297 (618)
Q Consensus 275 ~~~~~~l~~l~~L~~L~l~~n~l 297 (618)
+..+..+..+++|+.|++++|.+
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCE
T ss_pred ccChHHhccccCCCEEEccCCCc
Confidence 44444444444444444444443
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2e-29 Score=250.98 Aligned_cols=265 Identities=22% Similarity=0.224 Sum_probs=200.2
Q ss_pred CCCCCCCcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCC-
Q 038393 36 WNTSSSVCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLS- 114 (618)
Q Consensus 36 w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~- 114 (618)
|.....|+.+..+.......+++.|++++|.+ .+|..+... |++|+|++|.+. .+.+|..+.
T Consensus 24 ~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~-------------~~~~~~~~~~ 86 (312)
T 1wwl_A 24 WSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVR-------------AARIPSRILF 86 (312)
T ss_dssp GGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEE-------------EEECBHHHHH
T ss_pred hHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--Hhhccccccccc-------------CCCcCHHHHH
Confidence 54444455554443322234677788888888 566655544 888888888774 223454444
Q ss_pred ------CCCCCCEEeccCccccccCCccc--cCCCCCcEEEeeccccccccCcccCCC-----CCCCEEecccCcCcccC
Q 038393 115 ------NCKRLRNISLSLNDFSGTIPKEI--GNVTKLIGLYLRGNQLQGEIPEELGNL-----AELEELWLQNNFLTGTI 181 (618)
Q Consensus 115 ------~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~ 181 (618)
++++|++|+|++|.+++.+|..+ +.+++|++|+|++|++++. |..+..+ ++|++|++++|.+++..
T Consensus 87 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 87 GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp HHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred HHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 68899999999999988888876 8889999999999998866 7777766 88999999999998877
Q ss_pred CccccCCCCCCEEEeecccCccc---CCCC--CCCCCccEEEcccCcCcc---cCCccCCCCCCCcEEeccCccCcccCc
Q 038393 182 PSSIFNLSSLSILDLSVNNLTGT---IPYA--GNLFQLQWLDLSDNQLSG---SFPSFKFKMPRLQVLDLSVNGLSGELP 253 (618)
Q Consensus 182 ~~~l~~l~~L~~L~l~~n~l~~~---~~~~--~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~ 253 (618)
|..++++++|++|++++|++.+. ++.. ..+++|++|++++|++++ .....+..+++|++|++++|++++..|
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 78888999999999999987654 2222 678889999999998873 222334567899999999999887665
Q ss_pred hhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCcc
Q 038393 254 ANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRE 323 (618)
Q Consensus 254 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 323 (618)
...+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|.+++
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 455555788999999999988 6666665 7899999999999866 55 8888999999999998865
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.6e-27 Score=230.99 Aligned_cols=224 Identities=25% Similarity=0.210 Sum_probs=136.9
Q ss_pred CEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCccc
Q 038393 82 QTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEEL 161 (618)
Q Consensus 82 ~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l 161 (618)
++++.+++.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|
T Consensus 14 ~~~~c~~~~l~---------------~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 76 (285)
T 1ozn_A 14 VTTSCPQQGLQ---------------AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76 (285)
T ss_dssp CEEECCSSCCS---------------SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred eEEEcCcCCcc---------------cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhc
Confidence 67777777764 334332 3578888888888877766777788888888888888776667777
Q ss_pred CCCCCCCEEecccCc-CcccCCccccCCCCCCEEEeecccCcccCCC-CCCCCCccEEEcccCcCcccCCccCCCCCCCc
Q 038393 162 GNLAELEELWLQNNF-LTGTIPSSIFNLSSLSILDLSVNNLTGTIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQ 239 (618)
Q Consensus 162 ~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 239 (618)
..+++|++|++++|. +....|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++..+..+..+++|+
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 777888888888776 6655566677777777777777766654332 24455555555555555544444444444555
Q ss_pred EEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCC
Q 038393 240 VLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFN 319 (618)
Q Consensus 240 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 319 (618)
+|++++|++ ++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 157 ~L~l~~n~l-------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 157 HLFLHGNRI-------------------------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp EEECCSSCC-------------------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcc-------------------------cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 555555444 4433334445555555555555555444555555555555555555
Q ss_pred CCccCccccccCCCCCCCEEEcccccCcc
Q 038393 320 RLRELSFLSSLSNCKYLKYFSLSNNLLDG 348 (618)
Q Consensus 320 ~l~~~~~~~~l~~~~~L~~L~ls~n~l~~ 348 (618)
.++.++. ..+..+++|++|++++|++..
T Consensus 212 ~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 212 NLSALPT-EALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSCCCH-HHHTTCTTCCEEECCSSCEEC
T ss_pred cCCcCCH-HHcccCcccCEEeccCCCccC
Confidence 5555442 334555666666666665553
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=9.4e-27 Score=243.50 Aligned_cols=233 Identities=23% Similarity=0.245 Sum_probs=142.2
Q ss_pred CCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEE
Q 038393 212 FQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILV 291 (618)
Q Consensus 212 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 291 (618)
++++.|++++|.+++..+..+.++++|++|++++|.+++ ++...+..+++|++|+|++|+++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 345555555555555445555555555666666555552 2222233355666666666665544444555666666666
Q ss_pred eecccccccCCccccCCCCCCEEEcCC-CCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecc
Q 038393 292 LQFNNFSGAIPKEIGNLTKLEKLDLQF-NRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCN 370 (618)
Q Consensus 292 l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~ 370 (618)
+++|.+....+..|..+++|+.|++++ +.+..++. ..+..+++|++|++++|.++...
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~-------------------- 201 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIP-------------------- 201 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCC--------------------
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCcccc--------------------
Confidence 666666555555556666666666665 33444332 34555666666666666554221
Q ss_pred cccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchh
Q 038393 371 ISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPAC 450 (618)
Q Consensus 371 ~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 450 (618)
.+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|+++...+..
T Consensus 202 -------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 202 -------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp -------CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred -------ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 1345566777777777777666677777777777777777777766777777777777777777777766677
Q ss_pred hhcccCCCceecCCCCCcCCCcc
Q 038393 451 FGNLTYLKKLNLGSNQLTSTSST 473 (618)
Q Consensus 451 ~~~l~~L~~L~l~~n~l~~~~~~ 473 (618)
|..+++|+.|++++|++.+.+..
T Consensus 275 ~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 275 FTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TSSCTTCCEEECCSSCEECSSTT
T ss_pred hccccCCCEEEcCCCCccCCCCc
Confidence 77777777777777777766543
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=9.9e-26 Score=242.47 Aligned_cols=269 Identities=29% Similarity=0.291 Sum_probs=150.2
Q ss_pred CCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccC
Q 038393 79 SSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIP 158 (618)
Q Consensus 79 ~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p 158 (618)
.++++|++++|.++ .+|..+. ++|++|+|++|.++ .+|. .+++|++|+|++|.++ .+|
T Consensus 40 ~~l~~L~ls~n~L~---------------~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp 97 (622)
T 3g06_A 40 NGNAVLNVGESGLT---------------TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLP 97 (622)
T ss_dssp HCCCEEECCSSCCS---------------CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCC
T ss_pred CCCcEEEecCCCcC---------------ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCC
Confidence 46888888888875 3444443 67888888888777 3444 4677777777777776 445
Q ss_pred cccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCC
Q 038393 159 EELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRL 238 (618)
Q Consensus 159 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 238 (618)
. .+++|++|++++|.+++ +|. .+++|+.|++++|++++.+. .+++|++|++++|.+++ +|. .+++|
T Consensus 98 ~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L 163 (622)
T 3g06_A 98 V---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPA---LPSEL 163 (622)
T ss_dssp C---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTC
T ss_pred C---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC---CCCCCCEEECcCCcCCC-cCC---ccCCC
Confidence 4 55677777777777764 333 45666666666666654332 13555555555555543 221 12344
Q ss_pred cEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCC
Q 038393 239 QVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQF 318 (618)
Q Consensus 239 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 318 (618)
+.|++++|.++ .+| ..+++|+.|++++|.+++ +|. .+++|+.|++++
T Consensus 164 ~~L~L~~N~l~-~l~----------------------------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 210 (622)
T 3g06_A 164 CKLWAYNNQLT-SLP----------------------------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYN 210 (622)
T ss_dssp CEEECCSSCCS-CCC----------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CEEECCCCCCC-CCc----------------------------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcC
Confidence 55555555544 233 223444444444444442 221 124455555555
Q ss_pred CCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccc
Q 038393 319 NRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGT 398 (618)
Q Consensus 319 n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 398 (618)
|.++.++. .+++|++|++++|.+++.. ..+++|+.|++++|++..
T Consensus 211 N~l~~l~~-----~~~~L~~L~Ls~N~L~~lp-----------------------------~~l~~L~~L~Ls~N~L~~- 255 (622)
T 3g06_A 211 NRLTSLPA-----LPSGLKELIVSGNRLTSLP-----------------------------VLPSELKELMVSGNRLTS- 255 (622)
T ss_dssp SCCSSCCC-----CCTTCCEEECCSSCCSCCC-----------------------------CCCTTCCEEECCSSCCSC-
T ss_pred CcccccCC-----CCCCCCEEEccCCccCcCC-----------------------------CCCCcCcEEECCCCCCCc-
Confidence 55554441 1245555555555554321 122445555555555552
Q ss_pred cCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhccc
Q 038393 399 IPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLT 455 (618)
Q Consensus 399 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 455 (618)
+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..++
T Consensus 256 lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 256 LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 232 3456666666666666 4556666666666666666666666666555443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.8e-28 Score=243.31 Aligned_cols=240 Identities=22% Similarity=0.172 Sum_probs=153.1
Q ss_pred cEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCc
Q 038393 56 RVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPK 135 (618)
Q Consensus 56 ~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 135 (618)
++...+++.+.+...+...+..+++|++|+|++|.+. +..|..+.++++|++|+|++|.+++..+
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~--------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~- 75 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS--------------QISAADLAPFTKLELLNLSSNVLYETLD- 75 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC--------------CCCHHHHTTCTTCCEEECTTSCCEEEEE-
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC--------------cCCHHHhhCCCcCCEEECCCCcCCcchh-
Confidence 3444555555555444444455555666666555553 1223344555555555555555543332
Q ss_pred cccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCcc
Q 038393 136 EIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQ 215 (618)
Q Consensus 136 ~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~ 215 (618)
+..+++|++|++++|.++ +.. ..++|++|++++|.+.+..+. .+++|+
T Consensus 76 -~~~l~~L~~L~Ls~n~l~------------------------~l~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~ 123 (317)
T 3o53_A 76 -LESLSTLRTLDLNNNYVQ------------------------ELL-----VGPSIETLHAANNNISRVSCS--RGQGKK 123 (317)
T ss_dssp -ETTCTTCCEEECCSSEEE------------------------EEE-----ECTTCCEEECCSSCCSEEEEC--CCSSCE
T ss_pred -hhhcCCCCEEECcCCccc------------------------ccc-----CCCCcCEEECCCCccCCcCcc--ccCCCC
Confidence 445555555555555444 211 124555555555555443322 245677
Q ss_pred EEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecc
Q 038393 216 WLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFN 295 (618)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 295 (618)
+|++++|++++..+..+..+++|++|++++|.+++..+..+...+++|++|++++|.+++.. ....+++|++|++++|
T Consensus 124 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSN 201 (317)
T ss_dssp EEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSS
T ss_pred EEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCC
Confidence 77777777766666666777888888888888876556666555788888888888887652 2345788899999999
Q ss_pred cccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCc
Q 038393 296 NFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLD 347 (618)
Q Consensus 296 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~ 347 (618)
.+++. |..+..+++|+.|++++|.++.+| ..+..+++|+.|++++|+++
T Consensus 202 ~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 202 KLAFM-GPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCCEE-CGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCB
T ss_pred cCCcc-hhhhcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCcc
Confidence 88854 444888889999999999988877 56778888999999988887
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.2e-30 Score=284.61 Aligned_cols=438 Identities=15% Similarity=0.096 Sum_probs=241.6
Q ss_pred CcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCc---CCcccccCCcccccCCccCCCCCC
Q 038393 42 VCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGS---IPASIFNINMFHGKIPSTLSNCKR 118 (618)
Q Consensus 42 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~---~~~~~~~~n~~~~~~p~~l~~l~~ 118 (618)
|+.|.++... ..+.++++.+... .....+..+++|++|+++++..... .|..+.. .....++.....+++
T Consensus 34 ck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~--~~~~~l~~l~~~~~~ 106 (594)
T 2p1m_B 34 CKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGG--YVYPWIEAMSSSYTW 106 (594)
T ss_dssp CHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCC--BCHHHHHHHHHHCTT
T ss_pred HHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccc--hhhHHHHHHHHhCCC
Confidence 4478877221 2345566554322 1223467789999999998864211 1111100 000011222346789
Q ss_pred CCEEeccCccccccCCcccc-CCCCCcEEEeecc-ccccc-cCcccCCCCCCCEEecccCcCcccCCcccc----CCCCC
Q 038393 119 LRNISLSLNDFSGTIPKEIG-NVTKLIGLYLRGN-QLQGE-IPEELGNLAELEELWLQNNFLTGTIPSSIF----NLSSL 191 (618)
Q Consensus 119 L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~i~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~----~l~~L 191 (618)
|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+..+++|++|++++|.+++..+..+. .+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 99999999988877666665 6889999999988 45432 344445788999999999887765444443 56688
Q ss_pred CEEEeeccc--Ccc-cCCC-CCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCcc-------CcccCchhhhhcC
Q 038393 192 SILDLSVNN--LTG-TIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNG-------LSGELPANFCNNF 260 (618)
Q Consensus 192 ~~L~l~~n~--l~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l 260 (618)
++|++++|. +.. .+.. ...+++|++|++++|...+.++..+..+++|+.|+++.+. +. .++..+ ..+
T Consensus 187 ~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l-~~~ 264 (594)
T 2p1m_B 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL-SGC 264 (594)
T ss_dssp CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH-HTC
T ss_pred cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH-hcC
Confidence 888888876 211 0001 1235778888887773222355556667777777755442 22 223333 346
Q ss_pred CCCcEE-EccCCcccccCCccCCCCCCCcEEEeecccccccCC-ccccCCCCCCEEEcCCCCCccCccccccCCCCCCCE
Q 038393 261 PFLEEL-YLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIP-KEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKY 338 (618)
Q Consensus 261 ~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~ 338 (618)
++|+.| .+.+... ..++..+..+++|++|++++|.+++... ..+..+++|+.|++++| +.+.........+++|++
T Consensus 265 ~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 265 KELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 666666 3332221 1233333355667777777766553322 22445666777777665 332211112234566777
Q ss_pred EEcc---------cccCccccchhhhhccccccEEEeeecccccCCchhhh-cccccceeeeC--C----cccccc----
Q 038393 339 FSLS---------NNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEIS-NLTNLIAIYLG--G----NKLNGT---- 398 (618)
Q Consensus 339 L~ls---------~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~--~----n~i~~~---- 398 (618)
|+++ .+.+++.....+....++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++.
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 7662 23444443333333223666666666665554444443 46666666666 2 334311
Q ss_pred -cCccccccCCCceEEccccccccCCchhhhc-CCCCCeEEcCCCcceeccchhh-hcccCCCceecCCCCCcCC--Ccc
Q 038393 399 -IPITLGKLQKLQLLSFEDNQLEGSIPNDLCR-LAALFQLDLGGNMLSGFIPACF-GNLTYLKKLNLGSNQLTST--SST 473 (618)
Q Consensus 399 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~ 473 (618)
++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|+++.. ...
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 112244556666776655 444443344443 6666777776666655444333 4566667777766666332 112
Q ss_pred ccccccCcEEeCcCCcce
Q 038393 474 LWNIKYILYLNLSSNSFT 491 (618)
Q Consensus 474 ~~~~~~L~~L~ls~n~l~ 491 (618)
...+++|++|++++|+++
T Consensus 502 ~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp GGGGGGSSEEEEESSCCB
T ss_pred HHhCCCCCEEeeeCCCCC
Confidence 234566666666666654
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.2e-28 Score=242.90 Aligned_cols=238 Identities=20% Similarity=0.168 Sum_probs=163.0
Q ss_pred CCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEE
Q 038393 260 FPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYF 339 (618)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L 339 (618)
+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.++.++. .++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~------~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------GPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE------CTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC------CCCcCEE
Confidence 4455555555555554444445555555555555555544332 5555555555555555544431 2555556
Q ss_pred EcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccc-cccCCCceEEccccc
Q 038393 340 SLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITL-GKLQKLQLLSFEDNQ 418 (618)
Q Consensus 340 ~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~ 418 (618)
++++|.+++..+..+ +++++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+ ..+++|++|++++|+
T Consensus 105 ~l~~n~l~~~~~~~~----~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 105 HAANNNISRVSCSRG----QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp ECCSSCCSEEEECCC----SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECCCCccCCcCcccc----CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 666655555444332 256666666666666555667778888999999998887776666 367889999999998
Q ss_pred cccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCccccccccCcEEeCcCCcce-ecCCCC
Q 038393 419 LEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSSTLWNIKYILYLNLSSNSFT-GSLPLG 497 (618)
Q Consensus 419 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ls~n~l~-~~~p~~ 497 (618)
+++. + ....+++|+.|++++|++++..+. +..+++|+.|++++|+++.++..+..+++|+.|++++|++. +..|..
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred Cccc-c-cccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 8755 2 233488899999999999876544 88889999999999999888877888889999999999988 667777
Q ss_pred Ccccccceeeccccc
Q 038393 498 IGNLKVLVQIDLSMN 512 (618)
Q Consensus 498 l~~l~~L~~l~l~~n 512 (618)
+..++.|+.++++++
T Consensus 258 ~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 258 FSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HhccccceEEECCCc
Confidence 788888888887744
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=7.8e-26 Score=220.13 Aligned_cols=215 Identities=26% Similarity=0.304 Sum_probs=152.9
Q ss_pred CCCcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCC
Q 038393 40 SSVCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRL 119 (618)
Q Consensus 40 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L 119 (618)
.+.|.|.|+.|... ..++.+++++++++. +|..+. ++|++|++++|.+. +..+..|.++++|
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~--------------~~~~~~~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS--------------SLPSKAFHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS--------------CCCTTSSSSCTTC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC--------------eeCHHHhcCCCCC
Confidence 36799999999753 356789999999984 565554 68999999999885 2334467888999
Q ss_pred CEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecc
Q 038393 120 RNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVN 199 (618)
Q Consensus 120 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 199 (618)
++|++++|.++...+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 99999999988666666788889999999999888666677788888888888888888777777788888888888888
Q ss_pred cCcccCCC-CCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcc
Q 038393 200 NLTGTIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMF 273 (618)
Q Consensus 200 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 273 (618)
.+.+.++. +..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|...+..+++|+.|++++|.+
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence 77755443 255666666666666666554444555555555555555555 33333333344555555555544
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.7e-26 Score=239.63 Aligned_cols=219 Identities=23% Similarity=0.206 Sum_probs=177.5
Q ss_pred CCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEE
Q 038393 115 NCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSIL 194 (618)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 194 (618)
.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34478888888888877777778888888888888888876554 7788888888888888775432 2788888
Q ss_pred EeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCccc
Q 038393 195 DLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFY 274 (618)
Q Consensus 195 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 274 (618)
++++|.+.+.++. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+...+++|++|+|++|.++
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 8888888766553 46789999999999988888888889999999999999998778777756899999999999998
Q ss_pred ccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCc
Q 038393 275 GEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLD 347 (618)
Q Consensus 275 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~ 347 (618)
+..+ ...+++|++|++++|.+++..| .+..+++|+.|++++|.++.+| ..+..+++|+.|++++|.+.
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCBC
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccc--hhhccCCCCCEEEcCCCCCc
Confidence 7633 4468999999999999987544 4888999999999999999877 56788899999999999887
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.2e-28 Score=268.94 Aligned_cols=417 Identities=15% Similarity=0.112 Sum_probs=288.1
Q ss_pred CCcEEEEEcCCCCCcc---cCCc------------cccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCC-CCC
Q 038393 54 THRVTALNISGLNLTG---TIPS------------ELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLS-NCK 117 (618)
Q Consensus 54 ~~~v~~L~L~~~~l~~---~~~~------------~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~-~l~ 117 (618)
.++++.|+++++.... ..|. ....+++|++|+|++|.+++ ..+..+. .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--------------~~~~~l~~~~~ 130 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTD--------------DCLELIAKSFK 130 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCH--------------HHHHHHHHHCT
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcH--------------HHHHHHHHhCC
Confidence 4679999999876321 1221 23468899999999998742 2333343 588
Q ss_pred CCCEEeccCc-ccccc-CCccccCCCCCcEEEeeccccccccCcccC----CCCCCCEEecccCc--Cccc-CCccccCC
Q 038393 118 RLRNISLSLN-DFSGT-IPKEIGNVTKLIGLYLRGNQLQGEIPEELG----NLAELEELWLQNNF--LTGT-IPSSIFNL 188 (618)
Q Consensus 118 ~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~----~l~~L~~L~L~~n~--l~~~-~~~~l~~l 188 (618)
+|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+. .+++|++|++++|. +... ++..+.++
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 9999999999 55533 444456899999999999998765544443 67799999999986 3211 12223457
Q ss_pred CCCCEEEeecc-cCcccCCCCCCCCCccEEEcccCc-------CcccCCccCCCCCCCcEE-eccCccCcccCchhhhhc
Q 038393 189 SSLSILDLSVN-NLTGTIPYAGNLFQLQWLDLSDNQ-------LSGSFPSFKFKMPRLQVL-DLSVNGLSGELPANFCNN 259 (618)
Q Consensus 189 ~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~ 259 (618)
++|++|++++| .+.+.......+++|++|+++.+. +.+ ++..+.++++|+.| .+...... .++..+ ..
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~-~~ 287 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAVY-SV 287 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGH-HH
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHHH-Hh
Confidence 99999999998 344322233567899999976553 222 33356788999998 45443322 344333 34
Q ss_pred CCCCcEEEccCCcccccCC-ccCCCCCCCcEEEeeccccccc-CCccccCCCCCCEEEcC---------CCCCccCcccc
Q 038393 260 FPFLEELYLSKNMFYGEIP-SDLANCSYLRILVLQFNNFSGA-IPKEIGNLTKLEKLDLQ---------FNRLRELSFLS 328 (618)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~---------~n~l~~~~~~~ 328 (618)
+++|++|++++|.+++... ..+..+++|++|++++| +... ++.....+++|++|++. .+.++......
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 7899999999998764432 23568899999999998 4432 22333458999999983 34555432212
Q ss_pred ccCCCCCCCEEEcccccCccccchhhhhccccccEEEee--e----ccccc-----CCchhhhcccccceeeeCCccccc
Q 038393 329 SLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIV--S----CNISG-----GIPEEISNLTNLIAIYLGGNKLNG 397 (618)
Q Consensus 329 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~--~----~~~~~-----~~~~~~~~l~~L~~L~L~~n~i~~ 397 (618)
....+++|++|.++.|.+++..+..+....++|+.|++. + +.++. .++..+..+++|+.|++++ .+++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 234589999999999999988777776544589999999 3 33432 2223367889999999987 6666
Q ss_pred ccCccccc-cCCCceEEccccccccCCchhh-hcCCCCCeEEcCCCcceeccch-hhhcccCCCceecCCCCCcCC-Ccc
Q 038393 398 TIPITLGK-LQKLQLLSFEDNQLEGSIPNDL-CRLAALFQLDLGGNMLSGFIPA-CFGNLTYLKKLNLGSNQLTST-SST 473 (618)
Q Consensus 398 ~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~ 473 (618)
..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|+++.. ...
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 525 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL 525 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHH
Confidence 55555555 8999999999999976655555 6789999999999999655443 455689999999999998543 222
Q ss_pred c-cccccCcEEeCcCCc
Q 038393 474 L-WNIKYILYLNLSSNS 489 (618)
Q Consensus 474 ~-~~~~~L~~L~ls~n~ 489 (618)
+ ..++.++...+..+.
T Consensus 526 l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 526 LGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHCTTEEEEEECSSS
T ss_pred HHHhCCCCEEEEecCCC
Confidence 2 345667665555554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.1e-24 Score=210.94 Aligned_cols=206 Identities=23% Similarity=0.210 Sum_probs=126.4
Q ss_pred CCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccC
Q 038393 79 SSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIP 158 (618)
Q Consensus 79 ~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p 158 (618)
++|++|++++|.+. +..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+
T Consensus 28 ~~l~~L~ls~n~l~--------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 28 FSTKNLDLSFNPLR--------------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TTCCEEECTTCCCC--------------EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCccEEECCCCccc--------------ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 46777777777764 2223356666777777777777766655666666777777777776665555
Q ss_pred cccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCC
Q 038393 159 EELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRL 238 (618)
Q Consensus 159 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 238 (618)
..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+|..+..+++|
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L 151 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNL 151 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTC
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCC
Confidence 6666666666666666666655444555555555555555554421 134455556666
Q ss_pred cEEeccCccCcccCchhhhhcCCCCc----EEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEE
Q 038393 239 QVLDLSVNGLSGELPANFCNNFPFLE----ELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKL 314 (618)
Q Consensus 239 ~~L~l~~n~l~~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 314 (618)
++|++++|++++..+..+. .+++|+ +|++++|.+.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|
T Consensus 152 ~~L~Ls~N~l~~~~~~~~~-~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 152 EHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CEEECCSSCCCEECGGGGH-HHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEE
T ss_pred CEEECCCCCCCcCCHHHhh-hhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEE
Confidence 6666666666533333222 234444 677777777655444443 3467777777777776656666777777777
Q ss_pred EcCCCCCc
Q 038393 315 DLQFNRLR 322 (618)
Q Consensus 315 ~L~~n~l~ 322 (618)
++++|.+.
T Consensus 230 ~l~~N~~~ 237 (276)
T 2z62_A 230 WLHTNPWD 237 (276)
T ss_dssp ECCSSCBC
T ss_pred EccCCccc
Confidence 77777765
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1e-23 Score=206.09 Aligned_cols=209 Identities=23% Similarity=0.185 Sum_probs=157.1
Q ss_pred CCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEe
Q 038393 117 KRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDL 196 (618)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 196 (618)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777777777777666666777777777777777776555556666777777777777666655555655555555555
Q ss_pred ecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCccc-CchhhhhcCCCCcEEEccCCcccc
Q 038393 197 SVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGE-LPANFCNNFPFLEELYLSKNMFYG 275 (618)
Q Consensus 197 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~ 275 (618)
++|.+ ++..+..+..+++|++|++++|.+++. +|..+. .+++|++|++++|++++
T Consensus 108 ~~n~l-----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 108 VETNL-----------------------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTSCC-----------------------CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCE
T ss_pred CCCCc-----------------------cccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCc
Confidence 55544 444444567788999999999998852 566664 48999999999999998
Q ss_pred cCCccCCCCCCCc----EEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccc
Q 038393 276 EIPSDLANCSYLR----ILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILP 351 (618)
Q Consensus 276 ~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~ 351 (618)
..+..+..+++|+ .|++++|.+.+..+..+.. .+|+.|++++|.++.++. ..+..+++|++|++++|++++..+
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCH-hHhcccccccEEEccCCcccccCC
Confidence 8777777777776 8999999999766665544 589999999999999875 567889999999999999987654
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6e-23 Score=199.67 Aligned_cols=203 Identities=27% Similarity=0.310 Sum_probs=123.0
Q ss_pred CCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCc
Q 038393 80 SLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPE 159 (618)
Q Consensus 80 ~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~ 159 (618)
+.++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.++...+.
T Consensus 17 ~~~~l~~~~~~l~---------------~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLT---------------AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp TTTEEECTTSCCS---------------SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred CCCEEEccCCCCC---------------ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 4667777777765 2333232 4677777777777766556677777777777777777644444
Q ss_pred ccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCc
Q 038393 160 ELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQ 239 (618)
Q Consensus 160 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 239 (618)
.|..+++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..+..+++|+
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~~~l~~L~ 136 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-----------------------PPRVFDSLTKLT 136 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-----------------------CTTTTTTCTTCC
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee-----------------------CHHHhCcCcCCC
Confidence 556677777777777776655555556666666666666655543 333444455555
Q ss_pred EEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCC
Q 038393 240 VLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFN 319 (618)
Q Consensus 240 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 319 (618)
+|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 137 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 137 YLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 5555555554 333333334556666666666665555555666666666666666666555555666677777777777
Q ss_pred CCcc
Q 038393 320 RLRE 323 (618)
Q Consensus 320 ~l~~ 323 (618)
.+..
T Consensus 216 ~~~c 219 (270)
T 2o6q_A 216 PWDC 219 (270)
T ss_dssp CBCC
T ss_pred CeeC
Confidence 6543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=7e-24 Score=206.49 Aligned_cols=209 Identities=25% Similarity=0.282 Sum_probs=125.1
Q ss_pred ccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccc
Q 038393 75 LGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQ 154 (618)
Q Consensus 75 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 154 (618)
+..+++|+.|++++|.+. . ...+..+++|++|++++|.+++. ..+..+++|++|++++|.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~---------------~-~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK---------------S-VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHTTCCEEECTTSCCC---------------C-CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC
T ss_pred cccccceeeeeeCCCCcc---------------c-ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC
Confidence 445556666666666553 1 12345566666666666666532 35566666666666666666
Q ss_pred cccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCC-CCCCCccEEEcccCcCcccCCccCC
Q 038393 155 GEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYA-GNLFQLQWLDLSDNQLSGSFPSFKF 233 (618)
Q Consensus 155 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~ 233 (618)
+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++.. ..+++|++|++++|++++..+..+.
T Consensus 99 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 178 (272)
T 3rfs_A 99 SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178 (272)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhc
Confidence 555555566666666666666666555555666666666666666666544433 4566666666666666655555556
Q ss_pred CCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCC
Q 038393 234 KMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLT 309 (618)
Q Consensus 234 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 309 (618)
.+++|+.|++++|++++. +...+..+++|++|++++|.+.+ .+++|+.++++.|.++|.+|.+++.++
T Consensus 179 ~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 666777777777776643 33333446677777777776543 245677777777777777776665443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6.7e-23 Score=201.03 Aligned_cols=154 Identities=29% Similarity=0.170 Sum_probs=60.0
Q ss_pred CCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEccc
Q 038393 142 KLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSD 221 (618)
Q Consensus 142 ~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~ 221 (618)
+++.|+|++|.+++..+..|..+++|++|++++|.+++..+ ...+++|++|++++|++...+.....+++|++|++++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 34444444444443333344444444444444444432211 1333344444444444332222223333444444444
Q ss_pred CcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeeccccc
Q 038393 222 NQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFS 298 (618)
Q Consensus 222 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 298 (618)
|++++..+..+..+++|++|++++|+++ .+|...+..+++|+.|++++|+++...+..+..+++|++|++++|+++
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 4444333333444444444444444444 222222222344444444444443332223333344444444444333
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6.2e-23 Score=201.28 Aligned_cols=205 Identities=29% Similarity=0.327 Sum_probs=177.9
Q ss_pred cccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCcc
Q 038393 136 EIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQ 215 (618)
Q Consensus 136 ~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~ 215 (618)
.+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 3667888888999888887 5676664 6899999999999988888999999999999999999876554 7899999
Q ss_pred EEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecc
Q 038393 216 WLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFN 295 (618)
Q Consensus 216 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 295 (618)
+|++++|+++ .+|..+..+++|++|++++|+++ .++...+..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 9999999998 67778888999999999999998 555454556899999999999999877778889999999999999
Q ss_pred cccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCcc
Q 038393 296 NFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDG 348 (618)
Q Consensus 296 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~ 348 (618)
++++..+..|..+++|+.|++++|+++.+| ..+...++|+.+++++|++..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccC
Confidence 999777777888999999999999999888 566777889999999998764
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=3.8e-23 Score=198.79 Aligned_cols=191 Identities=25% Similarity=0.264 Sum_probs=160.1
Q ss_pred CCcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCC
Q 038393 41 SVCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLR 120 (618)
Q Consensus 41 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~ 120 (618)
+||.|.|..|.. ..+.+++++++++ .+|..+. ++|++|+|++|.+. +..+..+.++++|+
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~--------------~~~~~~~~~l~~L~ 62 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA--------------TLSDATFRGLTKLT 62 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC--------------CCCTTTTTTCTTCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC--------------ccCHhHhcCcccCC
Confidence 578999999953 4567899999998 4566555 68999999999985 34455688999999
Q ss_pred EEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeeccc
Q 038393 121 NISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNN 200 (618)
Q Consensus 121 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 200 (618)
+|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|+
T Consensus 63 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 63 WLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence 99999999998888889999999999999999997777888999999999999999997777778889999999999999
Q ss_pred CcccCCC-CCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCccc
Q 038393 201 LTGTIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGE 251 (618)
Q Consensus 201 l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 251 (618)
+++.++. +..+++|++|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9877663 47788888888888888877777777888888888888888754
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.7e-23 Score=201.34 Aligned_cols=206 Identities=23% Similarity=0.170 Sum_probs=183.4
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCC
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIP 134 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 134 (618)
.+++.|+++++.++.. +.++.+++|++|++++|.+.+ ...+.++++|++|++++|.+++..+
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~----------------~~~l~~l~~L~~L~L~~n~l~~~~~ 102 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD----------------ISALKELTNLTYLILTGNQLQSLPN 102 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC----------------CGGGTTCTTCCEEECTTSCCCCCCT
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC----------------chhhcCCCCCCEEECCCCccCccCh
Confidence 5789999999998742 358999999999999999852 2368899999999999999998888
Q ss_pred ccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCC-CCCCC
Q 038393 135 KEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYA-GNLFQ 213 (618)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~ 213 (618)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++.++.. ..+++
T Consensus 103 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 88999999999999999999877778999999999999999999887778899999999999999999777654 78999
Q ss_pred ccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCC
Q 038393 214 LQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSY 286 (618)
Q Consensus 214 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 286 (618)
|++|++++|++++..+..+..+++|+.|++++|.+.+. ++.|+.|++..|.++|.+|..++.++.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 99999999999988888889999999999999998743 567899999999999999988876644
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=6.6e-23 Score=195.62 Aligned_cols=195 Identities=20% Similarity=0.183 Sum_probs=128.1
Q ss_pred CCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCcc-ccccCCccccCCCCCcEEEeec-ccccccc
Q 038393 80 SLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLND-FSGTIPKEIGNVTKLIGLYLRG-NQLQGEI 157 (618)
Q Consensus 80 ~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~ 157 (618)
+|++|++++|+++ +..+..+.++++|++|++++|. ++...+..|.++++|++|++++ |.+++..
T Consensus 32 ~l~~L~l~~n~l~--------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 32 STQTLKLIETHLR--------------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp TCCEEEEESCCCS--------------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cccEEEEeCCcce--------------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 6777777777764 2223356667777777777775 6655556677777777777776 7777555
Q ss_pred CcccCCCCCCCEEecccCcCcccCCccccCCCCCC---EEEeecc-cCcccCCC-CCCCCCcc-EEEcccCcCcccCCcc
Q 038393 158 PEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLS---ILDLSVN-NLTGTIPY-AGNLFQLQ-WLDLSDNQLSGSFPSF 231 (618)
Q Consensus 158 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~-~~~l~~L~-~L~l~~n~l~~~~~~~ 231 (618)
+..|..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+. +..+++|+ +|++++|+++. +|..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~ 174 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGY 174 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHh
Confidence 5667777777777777777764 454 66666666 7777777 67665554 35677777 77777777763 3333
Q ss_pred CCCCCCCcEEeccCcc-CcccCchhhhhcC-CCCcEEEccCCcccccCCccCCCCCCCcEEEeecc
Q 038393 232 KFKMPRLQVLDLSVNG-LSGELPANFCNNF-PFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFN 295 (618)
Q Consensus 232 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n 295 (618)
.+..++|+.|++++|+ ++ .++...+..+ ++|++|++++|++++..+. .+++|+.|+++++
T Consensus 175 ~~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred hcCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 3333677777777774 66 4544444456 7777788877777643332 4567777777654
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1e-22 Score=194.24 Aligned_cols=196 Identities=18% Similarity=0.188 Sum_probs=146.9
Q ss_pred CCCCEEeccCccccccCCccccCCCCCcEEEeeccc-cccccCcccCCCCCCCEEeccc-CcCcccCCccccCCCCCCEE
Q 038393 117 KRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQ-LQGEIPEELGNLAELEELWLQN-NFLTGTIPSSIFNLSSLSIL 194 (618)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L 194 (618)
++|++|++++|++++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 379999999999998888889999999999999997 8866667899999999999998 99998777889999999999
Q ss_pred EeecccCcccCCCCCCCCCcc---EEEcccC-cCcccCCccCCCCCCCc-EEeccCccCcccCchhhhhcCCCCcEEEcc
Q 038393 195 DLSVNNLTGTIPYAGNLFQLQ---WLDLSDN-QLSGSFPSFKFKMPRLQ-VLDLSVNGLSGELPANFCNNFPFLEELYLS 269 (618)
Q Consensus 195 ~l~~n~l~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 269 (618)
++++|.+++. |.+..+++|+ +|++++| .+++..+..+..+++|+ .|++++|+++ .+|...+.. ++|++|+++
T Consensus 111 ~l~~n~l~~l-p~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMF-PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSC-CCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccc-cccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 9999999874 4466667776 8888888 77766666677777777 7777777777 566555443 567777777
Q ss_pred CCc-ccccCCccCCCC-CCCcEEEeecccccccCCccccCCCCCCEEEcCC
Q 038393 270 KNM-FYGEIPSDLANC-SYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQF 318 (618)
Q Consensus 270 ~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 318 (618)
+|+ +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 763 665555555555 6666666666665532221 344455555444
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=6.4e-25 Score=221.33 Aligned_cols=236 Identities=20% Similarity=0.226 Sum_probs=148.5
Q ss_pred CCcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCC--CCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCC
Q 038393 41 SVCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNL--SSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKR 118 (618)
Q Consensus 41 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l--~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~ 118 (618)
.|..|.++.|+. ..++.++++++.+. +..+..+ ++++.|++++|.+.+. +..+..+++
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~---------------~~~~~~~~~ 94 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQP---------------LAEHFSPFR 94 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSC---------------CCSCCCCBC
T ss_pred HHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCcccccc---------------chhhccCCC
Confidence 455899988863 45788999988776 4456666 8889999988887532 222456788
Q ss_pred CCEEeccCcccccc-CCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccC-cCccc-CCccccCCCCCCEEE
Q 038393 119 LRNISLSLNDFSGT-IPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNN-FLTGT-IPSSIFNLSSLSILD 195 (618)
Q Consensus 119 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~ 195 (618)
|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 88888888887755 6777778888888888888877777777777888888888887 56542 444455566666666
Q ss_pred eecc-cCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCC-CCcEEeccCc--cCc-ccCchhhhhcCCCCcEEEccC
Q 038393 196 LSVN-NLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMP-RLQVLDLSVN--GLS-GELPANFCNNFPFLEELYLSK 270 (618)
Q Consensus 196 l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~l~~L~~L~Ls~ 270 (618)
+++| .+++. .++..+..++ +|++|++++| .++ +.++..+ ..+++|++|++++
T Consensus 175 l~~~~~l~~~----------------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~l~~ 231 (336)
T 2ast_B 175 LSWCFDFTEK----------------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV-RRCPNLVHLDLSD 231 (336)
T ss_dssp CCCCTTCCHH----------------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH-HHCTTCSEEECTT
T ss_pred CCCCCCcChH----------------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH-hhCCCCCEEeCCC
Confidence 6665 54421 0222333445 5556666555 333 2333333 3366677777766
Q ss_pred Cc-ccccCCccCCCCCCCcEEEeeccc-ccccCCccccCCCCCCEEEcCCC
Q 038393 271 NM-FYGEIPSDLANCSYLRILVLQFNN-FSGAIPKEIGNLTKLEKLDLQFN 319 (618)
Q Consensus 271 n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n 319 (618)
|. +++..+..+..+++|++|++++|. +.......++.+++|+.|++++|
T Consensus 232 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66 554555556666666666666663 22111123445555555555555
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2e-24 Score=219.58 Aligned_cols=268 Identities=18% Similarity=0.152 Sum_probs=169.7
Q ss_pred EEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCC-CCCEEeccCccccccCCcccc
Q 038393 60 LNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCK-RLRNISLSLNDFSGTIPKEIG 138 (618)
Q Consensus 60 L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~~ 138 (618)
++++++++++.+|..+...++|++|+|++|.+.+..+. .+...+.+++ +|++|+|++|.+++..+..+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 72 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV----------ELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH----------HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH----------HHHHHHHhCCCceeEEECcCCCCCHHHHHHHH
Confidence 57888889888887777777799999999988522111 1115667787 899999999999877777776
Q ss_pred CC-----CCCcEEEeeccccccccCccc----CCC-CCCCEEecccCcCcccCCcccc----C-CCCCCEEEeecccCcc
Q 038393 139 NV-----TKLIGLYLRGNQLQGEIPEEL----GNL-AELEELWLQNNFLTGTIPSSIF----N-LSSLSILDLSVNNLTG 203 (618)
Q Consensus 139 ~l-----~~L~~L~L~~n~i~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~~~~l~----~-l~~L~~L~l~~n~l~~ 203 (618)
.+ ++|++|+|++|.+++..+..+ ..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+..
T Consensus 73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 65 889999999998886666543 344 7888999998888766554433 3 2578888888887763
Q ss_pred cCC-----CCCCC-CCccEEEcccCcCcccCCccC----CCC-CCCcEEeccCccCccc----CchhhhhcCCCCcEEEc
Q 038393 204 TIP-----YAGNL-FQLQWLDLSDNQLSGSFPSFK----FKM-PRLQVLDLSVNGLSGE----LPANFCNNFPFLEELYL 268 (618)
Q Consensus 204 ~~~-----~~~~l-~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~L 268 (618)
... ....+ ++|++|++++|++++..+..+ ... ++|++|++++|.+++. ++..+....++|++|+|
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 221 11223 367777777777765544322 233 4777777777777642 33333332346777777
Q ss_pred cCCcccccCC----ccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccc
Q 038393 269 SKNMFYGEIP----SDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNN 344 (618)
Q Consensus 269 s~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n 344 (618)
++|.+++..+ ..+..+++|++|++++|.+.+..+..+. .++ ..+..+++|+.|++++|
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~----------------~l~--~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK----------------ALG--AAFPNIQKIILVDKNGK 294 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH----------------HHH--TTSTTCCEEEEECTTSC
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH----------------HHH--HHhccCCceEEEecCCC
Confidence 7776654332 2234556666666666664432222111 011 34456667777777777
Q ss_pred cCccccchhhh
Q 038393 345 LLDGILPRAIG 355 (618)
Q Consensus 345 ~l~~~~~~~~~ 355 (618)
.+.+..+..+.
T Consensus 295 ~l~~~~~~~~~ 305 (362)
T 3goz_A 295 EIHPSHSIPIS 305 (362)
T ss_dssp BCCGGGCHHHH
T ss_pred cCCCcchHHHH
Confidence 77766554443
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.1e-24 Score=219.52 Aligned_cols=254 Identities=19% Similarity=0.235 Sum_probs=123.4
Q ss_pred cCCccCCCCCCCCEEeccCccccccCC----ccccCCC-CCcEEEeeccccccccCcccCCC-----CCCCEEecccCcC
Q 038393 108 KIPSTLSNCKRLRNISLSLNDFSGTIP----KEIGNVT-KLIGLYLRGNQLQGEIPEELGNL-----AELEELWLQNNFL 177 (618)
Q Consensus 108 ~~p~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~i~~~~p~~l~~l-----~~L~~L~L~~n~l 177 (618)
.+|..+...++|++|+|++|.+++..+ +.|..++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 344444455557777777776665544 5555666 66666666666665555555443 6666666666666
Q ss_pred cccCCcccc----CC-CCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCC-CCCCcEEeccCccCccc
Q 038393 178 TGTIPSSIF----NL-SSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFK-MPRLQVLDLSVNGLSGE 251 (618)
Q Consensus 178 ~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~ 251 (618)
++..+..+. .+ ++|++|++++|.+++..+.. +...+.. .++|++|++++|.+++.
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-------------------l~~~l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE-------------------FKQAFSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH-------------------HHHHHTTSCTTCCEEECTTSCGGGS
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH-------------------HHHHHHhCCCceeEEEccCCcCCHH
Confidence 544443322 22 45555555555544322100 0011112 13555555555555432
Q ss_pred Cchhhh---hcCC-CCcEEEccCCcccccCCcc----CCCC-CCCcEEEeeccccccc----CCccccC-CCCCCEEEcC
Q 038393 252 LPANFC---NNFP-FLEELYLSKNMFYGEIPSD----LANC-SYLRILVLQFNNFSGA----IPKEIGN-LTKLEKLDLQ 317 (618)
Q Consensus 252 ~~~~~~---~~l~-~L~~L~Ls~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~L~ 317 (618)
....+. ..++ +|++|+|++|.+++..+.. +..+ ++|++|++++|.+++. ++..+.. .++|+.|+++
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 222211 1122 5555666555555433322 2223 3555555555555542 2223333 2356666666
Q ss_pred CCCCccCcc---ccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcc
Q 038393 318 FNRLRELSF---LSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNK 394 (618)
Q Consensus 318 ~n~l~~~~~---~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 394 (618)
+|.++..+. ...+..+++|+.|++++|.+.+..+..+..+. ..+..+++|+.|++++|+
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~------------------~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG------------------AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH------------------TTSTTCCEEEEECTTSCB
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH------------------HHhccCCceEEEecCCCc
Confidence 665554432 12234455566666666655444433332221 234455556666666666
Q ss_pred cccc
Q 038393 395 LNGT 398 (618)
Q Consensus 395 i~~~ 398 (618)
+.+.
T Consensus 296 l~~~ 299 (362)
T 3goz_A 296 IHPS 299 (362)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 5544
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=201.78 Aligned_cols=201 Identities=23% Similarity=0.239 Sum_probs=136.7
Q ss_pred CCCcEEEeeccccccccCccc--CCCCCCCEEecccCcCcccCC----ccccCCCCCCEEEeecccCcccCCC-CCCCCC
Q 038393 141 TKLIGLYLRGNQLQGEIPEEL--GNLAELEELWLQNNFLTGTIP----SSIFNLSSLSILDLSVNNLTGTIPY-AGNLFQ 213 (618)
Q Consensus 141 ~~L~~L~L~~n~i~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~ 213 (618)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.++. +..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666555555555 555666666666666554333 2233455666666666666544432 245666
Q ss_pred ccEEEcccCcCccc----CCccCCCCCCCcEEeccCccCcccCch---hhhhcCCCCcEEEccCCcccccCCccCCCC--
Q 038393 214 LQWLDLSDNQLSGS----FPSFKFKMPRLQVLDLSVNGLSGELPA---NFCNNFPFLEELYLSKNMFYGEIPSDLANC-- 284 (618)
Q Consensus 214 L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-- 284 (618)
|++|++++|++.+. .+..+..+++|++|++++|+++ .++. .++..+++|++|+|++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666666665431 1223356788888888888886 3333 244557899999999999988777777666
Q ss_pred -CCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCcc
Q 038393 285 -SYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDG 348 (618)
Q Consensus 285 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~ 348 (618)
++|++|++++|+++ .+|..+. ++|+.|++++|+++.+|. +..+++|+.|++++|++++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch---hhhCCCccEEECcCCCCCC
Confidence 69999999999998 5566654 799999999999998763 5677899999999998874
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=5.3e-23 Score=204.41 Aligned_cols=229 Identities=20% Similarity=0.175 Sum_probs=180.2
Q ss_pred CCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccc--cCCCCCcEEEeecccccc
Q 038393 78 LSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEI--GNVTKLIGLYLRGNQLQG 155 (618)
Q Consensus 78 l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~ 155 (618)
-..++.|.+.++.+....- ..++ .+..+++|++|++++|.+++..|..+ ..+++|++|+|++|.+.+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~----------~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~ 131 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLL----------VGAL-RVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT 131 (310)
T ss_dssp SCCCCEEEECSCCCBHHHH----------HHHH-HHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS
T ss_pred hcceeEEEEeCCcCCHHHH----------HHHH-HhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc
Confidence 3457888888887641000 0011 12234679999999999999999888 899999999999999987
Q ss_pred ccC----cccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcc---cCCC--CCCCCCccEEEcccCcCcc
Q 038393 156 EIP----EELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTG---TIPY--AGNLFQLQWLDLSDNQLSG 226 (618)
Q Consensus 156 ~~p----~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---~~~~--~~~l~~L~~L~l~~n~l~~ 226 (618)
..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+ ..+. ...+++|++|++++|+++.
T Consensus 132 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 132 GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 555 445678999999999999998888899999999999999999765 2222 2678999999999999973
Q ss_pred cCCc----cCCCCCCCcEEeccCccCcccCchhhhhc--CCCCcEEEccCCcccccCCccCCCCCCCcEEEeeccccccc
Q 038393 227 SFPS----FKFKMPRLQVLDLSVNGLSGELPANFCNN--FPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGA 300 (618)
Q Consensus 227 ~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 300 (618)
. +. .+..+++|++|++++|++++..|..+... +++|++|++++|+++ .+|..+. ++|++|++++|++++.
T Consensus 212 l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 212 P-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp H-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred h-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence 2 22 24578999999999999997767665442 379999999999998 5676664 7999999999999864
Q ss_pred CCccccCCCCCCEEEcCCCCCcc
Q 038393 301 IPKEIGNLTKLEKLDLQFNRLRE 323 (618)
Q Consensus 301 ~~~~~~~l~~L~~L~L~~n~l~~ 323 (618)
|. +..+++|+.|++++|.+++
T Consensus 288 -~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 -PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -CC-TTSCCCCSCEECSSTTTSC
T ss_pred -ch-hhhCCCccEEECcCCCCCC
Confidence 33 6788999999999999875
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=6e-22 Score=196.26 Aligned_cols=195 Identities=26% Similarity=0.347 Sum_probs=126.2
Q ss_pred ccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccc
Q 038393 75 LGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQ 154 (618)
Q Consensus 75 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 154 (618)
+..+++|++|++++|.+. .+| .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~---------------~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT---------------TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HHHHHTCCEEECTTSCCC---------------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HHHcCCcCEEEeeCCCcc---------------Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 345666777777776664 222 35566677777777776664433 667777777777777766
Q ss_pred cccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCC
Q 038393 155 GEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFK 234 (618)
Q Consensus 155 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 234 (618)
+. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ ...+++|++|++++|.+++..+ +..
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~ 171 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LAN 171 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcC
Confidence 32 3566777777777777777643 2 26667777777777777664433 4556677777777777664332 666
Q ss_pred CCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccc
Q 038393 235 MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSG 299 (618)
Q Consensus 235 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 299 (618)
+++|+.|++++|.+++ ++. +..+++|++|++++|++++.. .+..+++|+.|++++|.+++
T Consensus 172 l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISD-ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCc-Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 7777777777777763 332 234777777777777776544 26777777777777777754
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3.2e-23 Score=212.87 Aligned_cols=235 Identities=20% Similarity=0.212 Sum_probs=133.4
Q ss_pred CCCCcEEEccCCcccccCC----ccCCCCCCCcEEEeeccc---ccccCCccc-------cCCCCCCEEEcCCCCCccCc
Q 038393 260 FPFLEELYLSKNMFYGEIP----SDLANCSYLRILVLQFNN---FSGAIPKEI-------GNLTKLEKLDLQFNRLRELS 325 (618)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~L~~n~l~~~~ 325 (618)
+++|++|+|++|.+....+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.+....
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 3444444444444443211 223445555555555432 222233222 45556666666666555410
Q ss_pred ---cccccCCCCCCCEEEcccccCccccchhhhhcc------------ccccEEEeeecccc-cCCc---hhhhcccccc
Q 038393 326 ---FLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLS------------QSIEEFWIVSCNIS-GGIP---EEISNLTNLI 386 (618)
Q Consensus 326 ---~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~------------~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~ 386 (618)
....+..+++|++|++++|.+++..+..+.... ++|++|++++|.+. ..++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 113445556666666666666544443333221 25666666666554 2233 3455667777
Q ss_pred eeeeCCccccc-----ccCccccccCCCceEEccccccc----cCCchhhhcCCCCCeEEcCCCcceec----cchhhhc
Q 038393 387 AIYLGGNKLNG-----TIPITLGKLQKLQLLSFEDNQLE----GSIPNDLCRLAALFQLDLGGNMLSGF----IPACFGN 453 (618)
Q Consensus 387 ~L~L~~n~i~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~ 453 (618)
.|++++|++.. ..+..+..+++|++|+|++|.++ ..+|..+..+++|+.|+|++|.+++. ++..+..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 77777777762 23336667777777777777775 45566677777777777777777665 3444433
Q ss_pred --ccCCCceecCCCCCcC-----CCccc-cccccCcEEeCcCCcceecC
Q 038393 454 --LTYLKKLNLGSNQLTS-----TSSTL-WNIKYILYLNLSSNSFTGSL 494 (618)
Q Consensus 454 --l~~L~~L~l~~n~l~~-----~~~~~-~~~~~L~~L~ls~n~l~~~~ 494 (618)
+++|+.|++++|.++. ++..+ .++++|++|++++|++++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6777777777777776 44444 34677777777777776443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.7e-23 Score=214.96 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=71.1
Q ss_pred hhhcccccceeeeCCcccc----cccCccccccCCCceEEccccccccC----Cchhhhc--CCCCCeEEcCCCccee--
Q 038393 378 EISNLTNLIAIYLGGNKLN----GTIPITLGKLQKLQLLSFEDNQLEGS----IPNDLCR--LAALFQLDLGGNMLSG-- 445 (618)
Q Consensus 378 ~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~Ls~n~l~~-- 445 (618)
.+..+++|+.|++++|.++ ..++..+..+++|++|+|++|.+++. ++..+.. +++|+.|+|++|.+++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 5667778888888888875 45666777888888888888888754 4455533 7888888888888887
Q ss_pred --ccchhh-hcccCCCceecCCCCCcCCC
Q 038393 446 --FIPACF-GNLTYLKKLNLGSNQLTSTS 471 (618)
Q Consensus 446 --~~~~~~-~~l~~L~~L~l~~n~l~~~~ 471 (618)
.+|..+ .++++|+.|++++|+++...
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 356555 66788999999999888764
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.6e-22 Score=203.81 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=52.7
Q ss_pred hhccc-ccceeeeCCc--ccc-cccCccccccCCCceEEccccc-cccCCchhhhcCCCCCeEEcCCCc-ceeccchhhh
Q 038393 379 ISNLT-NLIAIYLGGN--KLN-GTIPITLGKLQKLQLLSFEDNQ-LEGSIPNDLCRLAALFQLDLGGNM-LSGFIPACFG 452 (618)
Q Consensus 379 ~~~l~-~L~~L~L~~n--~i~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 452 (618)
+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......+.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 33444 4555555544 222 2233334445555555555554 444444445555555555555553 2211122344
Q ss_pred cccCCCceecCCCCCcCCCcccccc-ccCcEEeCcCCcceecCCCCCc
Q 038393 453 NLTYLKKLNLGSNQLTSTSSTLWNI-KYILYLNLSSNSFTGSLPLGIG 499 (618)
Q Consensus 453 ~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~ls~n~l~~~~p~~l~ 499 (618)
.+++|+.|++++| ++. ..+..+ ..+..|++++|.+++..|..++
T Consensus 270 ~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 270 EIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred cCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCccc
Confidence 5555555555555 221 111122 2244455555666555554443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.7e-21 Score=193.00 Aligned_cols=194 Identities=27% Similarity=0.345 Sum_probs=119.4
Q ss_pred CCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEE
Q 038393 115 NCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSIL 194 (618)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 194 (618)
.+++|++|++++|.++. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 45566666666666653 23 455666666666666666533 22 55666666666666665532 234555555555
Q ss_pred EeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCccc
Q 038393 195 DLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFY 274 (618)
Q Consensus 195 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 274 (618)
++++|.++ +. + .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++
T Consensus 113 ~l~~n~l~-----------------------~~-~-~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 113 DLTSTQIT-----------------------DV-T-PLAGLSNLQVLYLDLNQITN-ISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ECTTSCCC-----------------------CC-G-GGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCC-----------------------Cc-h-hhcCCCCCCEEECCCCccCc-Ccc--ccCCCCccEEEccCCcCC
Confidence 55555444 32 1 14555666666666666653 222 234677777777777766
Q ss_pred ccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccc
Q 038393 275 GEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGI 349 (618)
Q Consensus 275 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~ 349 (618)
+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.++.++ .+..+++|++|++++|++++.
T Consensus 165 ~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 165 DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEECC
T ss_pred CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeecC
Confidence 4332 6677777777777777765433 677788888888888887775 367788888888888887654
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8.6e-21 Score=182.28 Aligned_cols=153 Identities=27% Similarity=0.231 Sum_probs=99.6
Q ss_pred CCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCc
Q 038393 80 SLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPE 159 (618)
Q Consensus 80 ~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~ 159 (618)
..++++++++.+. .+|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+.
T Consensus 15 ~~~~l~~~~~~l~---------------~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 15 GKKEVDCQGKSLD---------------SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp GGTEEECTTCCCS---------------SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCeEEecCCCCcc---------------ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence 4567788877775 3343333 4777888888888777777777788888888888877776666
Q ss_pred ccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCC-CCCCCccEEEcccCcCcccCCccCCCCCCC
Q 038393 160 ELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYA-GNLFQLQWLDLSDNQLSGSFPSFKFKMPRL 238 (618)
Q Consensus 160 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 238 (618)
.|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+.. ..+++|++|++++|++++..+..+..+++|
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 7777777778887777777666666677777777777777666544432 445555555555555554444344444444
Q ss_pred cEEeccCccCc
Q 038393 239 QVLDLSVNGLS 249 (618)
Q Consensus 239 ~~L~l~~n~l~ 249 (618)
++|++++|+++
T Consensus 158 ~~L~L~~N~l~ 168 (251)
T 3m19_A 158 QTLSLSTNQLQ 168 (251)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECCCCcCC
Confidence 44444444444
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=6.5e-21 Score=192.65 Aligned_cols=241 Identities=22% Similarity=0.227 Sum_probs=170.6
Q ss_pred cceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCC-ccCCCCCCCCE
Q 038393 43 CNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIP-STLSNCKRLRN 121 (618)
Q Consensus 43 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p-~~l~~l~~L~~ 121 (618)
|.|..|.|. +++++ .+|..+ .+++++|+|++|+|+ .+| .+|.++++|++
T Consensus 9 C~~~~v~C~------------~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~---------------~i~~~~f~~l~~L~~ 58 (350)
T 4ay9_X 9 CSNRVFLCQ------------ESKVT-EIPSDL--PRNAIELRFVLTKLR---------------VIQKGAFSGFGDLEK 58 (350)
T ss_dssp EETTEEEEE------------STTCC-SCCTTC--CTTCSEEEEESCCCS---------------EECTTSSTTCTTCCE
T ss_pred eeCCEEEec------------CCCCC-ccCcCc--CCCCCEEEccCCcCC---------------CcCHHHHcCCCCCCE
Confidence 666666664 44555 455555 357888888888885 333 35788888888
Q ss_pred EeccCccccccCC-ccccCCCCCcE-EEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeec-
Q 038393 122 ISLSLNDFSGTIP-KEIGNVTKLIG-LYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSV- 198 (618)
Q Consensus 122 L~L~~n~l~~~~~-~~~~~l~~L~~-L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~- 198 (618)
|+|++|.+.+.+| ..|.++++++. +.+++|+++...|+.|..+++|++|++++|.++...+..+....++..|++.+
T Consensus 59 L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 59 IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp EEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred EECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc
Confidence 8888888865554 46788888765 56667888877778888888899999988888876666677777788888865
Q ss_pred ccCcccCCCC-CC-CCCccEEEcccCcCcccCCccCCCCCCCcEEeccC-ccCcccCchhhhhcCCCCcEEEccCCcccc
Q 038393 199 NNLTGTIPYA-GN-LFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSV-NGLSGELPANFCNNFPFLEELYLSKNMFYG 275 (618)
Q Consensus 199 n~l~~~~~~~-~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 275 (618)
+.+....+.. .. ...+++|++++|+++. ++...+...+|++|++.+ |.++ .+|...+..+++|++|++++|+++.
T Consensus 139 ~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 139 INIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp TTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC
T ss_pred cccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc
Confidence 4565444332 33 3468888999998885 444445667888888875 4554 7887777778889999999998885
Q ss_pred cCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCC
Q 038393 276 EIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFN 319 (618)
Q Consensus 276 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 319 (618)
..+..+ .+|+.|.+.++.--..+| .+..+++|+.+++.++
T Consensus 217 lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 217 LPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred cChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 544444 455666655554334556 3778888999888753
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=4.5e-21 Score=193.82 Aligned_cols=238 Identities=20% Similarity=0.145 Sum_probs=183.1
Q ss_pred CEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccC-cc
Q 038393 82 QTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIP-EE 160 (618)
Q Consensus 82 ~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p-~~ 160 (618)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..
T Consensus 12 ~~v~C~~~~Lt---------------~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 12 RVFLCQESKVT---------------EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp TEEEEESTTCC---------------SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred CEEEecCCCCC---------------ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 56777888875 455544 3689999999999997777789999999999999999876555 56
Q ss_pred cCCCCCCCE-EecccCcCcccCCccccCCCCCCEEEeecccCcccCCCC-CCCCCccEEEccc-CcCcccCCccCCCCC-
Q 038393 161 LGNLAELEE-LWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYA-GNLFQLQWLDLSD-NQLSGSFPSFKFKMP- 236 (618)
Q Consensus 161 l~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~l~~-n~l~~~~~~~~~~l~- 236 (618)
|.+++++++ +.+.+|+++...|..|..+++|++|++++|++....+.. ....++..|++.+ +.+....+..+..+.
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~ 154 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence 889998875 666779999888899999999999999999998765543 4566788888866 567655556666654
Q ss_pred CCcEEeccCccCcccCchhhhhcCCCCcEEEccC-CcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEE
Q 038393 237 RLQVLDLSVNGLSGELPANFCNNFPFLEELYLSK-NMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLD 315 (618)
Q Consensus 237 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 315 (618)
.++.|++++|+++ .++...+. ..+|++|++++ |.++...+..|..+++|++|++++|+++...+..+ .+|+.|.
T Consensus 155 ~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~ 229 (350)
T 4ay9_X 155 ESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLR 229 (350)
T ss_dssp SCEEEECCSSCCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEE
T ss_pred hhhhhcccccccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhh
Confidence 6889999999998 66666655 56799999975 56665555678899999999999999986544444 4556665
Q ss_pred cCC-CCCccCccccccCCCCCCCEEEcccc
Q 038393 316 LQF-NRLRELSFLSSLSNCKYLKYFSLSNN 344 (618)
Q Consensus 316 L~~-n~l~~~~~~~~l~~~~~L~~L~ls~n 344 (618)
+.+ +.++.+| .+..+++|+.++++++
T Consensus 230 ~l~~~~l~~lP---~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 230 ARSTYNLKKLP---TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCTTCCCCC---CTTTCCSCCEEECSCH
T ss_pred hccCCCcCcCC---CchhCcChhhCcCCCC
Confidence 544 4566665 4677788888888764
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=1.6e-21 Score=207.05 Aligned_cols=203 Identities=26% Similarity=0.325 Sum_probs=147.3
Q ss_pred CCCCCCCc-----ceeee-eeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccC
Q 038393 36 WNTSSSVC-----NWTGV-TCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKI 109 (618)
Q Consensus 36 w~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~ 109 (618)
|..+.++| .|.|+ .|.. .+++.|++++|++++ +|..+. ++|++|+|++|.++ .+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~---------------~i 95 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI---------------SL 95 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS---------------CC
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc---------------cc
Confidence 76666778 79999 7863 479999999999987 666553 78999999999985 34
Q ss_pred CccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCC
Q 038393 110 PSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLS 189 (618)
Q Consensus 110 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 189 (618)
| ..+++|++|+|++|.+++ +|. +.+ +|++|+|++|.+++ +|. .+++|++|++++|.+++ +|. .++
T Consensus 96 p---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~ 160 (571)
T 3cvr_A 96 P---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT 160 (571)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT
T ss_pred c---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC
Confidence 5 346889999999999986 666 655 89999999999885 665 67889999999998885 554 567
Q ss_pred CCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCC-------cEEeccCccCcccCchhhhhcCCC
Q 038393 190 SLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRL-------QVLDLSVNGLSGELPANFCNNFPF 262 (618)
Q Consensus 190 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~~l~~ 262 (618)
+|++|++++|++++.+. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..++. +++
T Consensus 161 ~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDP 231 (571)
T ss_dssp TCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCT
T ss_pred CcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCC
Confidence 88888888888876444 33 77888888888777 4444 332 55 66666666666 55655554 666
Q ss_pred CcEEEccCCcccccCCccCC
Q 038393 263 LEELYLSKNMFYGEIPSDLA 282 (618)
Q Consensus 263 L~~L~Ls~n~l~~~~~~~l~ 282 (618)
|+.|+|++|.+++.+|..+.
T Consensus 232 L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp TEEEECCSSSCCHHHHHHHH
T ss_pred CCEEEeeCCcCCCcCHHHHH
Confidence 66666666666555554443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=3.3e-21 Score=179.57 Aligned_cols=180 Identities=25% Similarity=0.239 Sum_probs=124.1
Q ss_pred CcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCE
Q 038393 42 VCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRN 121 (618)
Q Consensus 42 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~ 121 (618)
.|.|.+|.|.. ++++ .+|..+ .++|++|++++|.+. +..+..+.++++|++
T Consensus 6 ~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~--------------~~~~~~~~~l~~L~~ 56 (208)
T 2o6s_A 6 SCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLK--------------SLPNGVFDELTSLTQ 56 (208)
T ss_dssp EEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCC--------------CCCTTTTTTCTTCSE
T ss_pred EECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccC--------------cCChhhhcccccCcE
Confidence 47899998864 2233 233322 347777777777764 122334667777777
Q ss_pred EeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccC
Q 038393 122 ISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNL 201 (618)
Q Consensus 122 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 201 (618)
|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 57 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 57 LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc
Confidence 77777777766566677777777777777777755555667777777777777777766666677777778888877777
Q ss_pred cccCCC-CCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhh
Q 038393 202 TGTIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFC 257 (618)
Q Consensus 202 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 257 (618)
++..+. +..+++|++|++++|.+.+ .+++|+.|+++.|+++|.+|..+.
T Consensus 137 ~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 137 KSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 765554 3667778888887776653 355777888888888877776654
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=6.7e-20 Score=170.68 Aligned_cols=161 Identities=24% Similarity=0.176 Sum_probs=110.4
Q ss_pred CCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEE
Q 038393 116 CKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILD 195 (618)
Q Consensus 116 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 195 (618)
.++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 35788888888888866666678888888888888888766556677888888888888888766666677777788888
Q ss_pred eecccCcccCCC-CCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCccc
Q 038393 196 LSVNNLTGTIPY-AGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFY 274 (618)
Q Consensus 196 l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 274 (618)
+++|++++..+. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+. ++.|+.|+++.|.++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHS 178 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC--------TTTTHHHHHHHHHCT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC--------CCCHHHHHHHHHhCC
Confidence 777777765554 25566677777777766655555555666666666666655421 345555566666666
Q ss_pred ccCCccCCCC
Q 038393 275 GEIPSDLANC 284 (618)
Q Consensus 275 ~~~~~~l~~l 284 (618)
+.+|..++.+
T Consensus 179 g~ip~~~~~l 188 (208)
T 2o6s_A 179 GVVRNSAGSV 188 (208)
T ss_dssp TTBBCTTSSB
T ss_pred ceeeccCccc
Confidence 5555555444
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=2.9e-19 Score=168.80 Aligned_cols=162 Identities=25% Similarity=0.245 Sum_probs=126.8
Q ss_pred CCCCCCCcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCC
Q 038393 36 WNTSSSVCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSN 115 (618)
Q Consensus 36 w~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~ 115 (618)
|..+.+.|+|.+|.|.. ++++ .+|..+. ++|++|+|++|.+. +..|..+.+
T Consensus 12 ~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~--------------~~~~~~~~~ 62 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQIT--------------KLEPGVFDS 62 (229)
T ss_dssp CCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCC--------------CCCTTTTTT
T ss_pred cCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccC--------------ccCHHHhhC
Confidence 55677889999999863 2343 3444443 78888888888884 344566788
Q ss_pred CCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEE
Q 038393 116 CKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILD 195 (618)
Q Consensus 116 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 195 (618)
+++|++|+|++|.++...+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++ .+|..+..+++|++|+
T Consensus 63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 141 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence 888888888888887666677788888899999888888766677888888999999888888 6778888888899999
Q ss_pred eecccCcccCCC-CCCCCCccEEEcccCcCccc
Q 038393 196 LSVNNLTGTIPY-AGNLFQLQWLDLSDNQLSGS 227 (618)
Q Consensus 196 l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 227 (618)
+++|++.+..+. +..+++|++|++++|.+...
T Consensus 142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 998888866654 46788899999998887643
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=6.7e-19 Score=187.02 Aligned_cols=190 Identities=22% Similarity=0.252 Sum_probs=111.0
Q ss_pred CCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEee
Q 038393 118 RLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLS 197 (618)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 197 (618)
+|++|+|++|.+++ +|..+. ++|++|+|++|.|+ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777664 454442 56777777777666 455 345666666666666664 444 443 56666666
Q ss_pred cccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccC
Q 038393 198 VNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEI 277 (618)
Q Consensus 198 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 277 (618)
+|.+++.++ .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~-------------------------lp~----~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTM-------------------------LPE----LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSC-------------------------CCC----CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCc-------------------------CCC----cCCCcCEEECCCCCCCC-c
Confidence 665554222 34455555555555443 332 13445555555555543 3
Q ss_pred CccCCCCCCCcEEEeecccccccCCccccC-----CCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccch
Q 038393 278 PSDLANCSYLRILVLQFNNFSGAIPKEIGN-----LTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPR 352 (618)
Q Consensus 278 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~ 352 (618)
|. +. ++|+.|++++|.++ .+|. +.. .+.|+.|++++|.|+.+| ..+..+++|+.|++++|++++..|.
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPVRNHHSEETEIFFRCRENRITHIP--ENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC--------CCEEEECCSSCCCCCC--GGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHHhhhcccccceEEecCCCcceecC--HHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 33 33 55555555555555 3333 332 122378888888888777 4555688888888888888888887
Q ss_pred hhhhcc
Q 038393 353 AIGNLS 358 (618)
Q Consensus 353 ~~~~~~ 358 (618)
.+..+.
T Consensus 249 ~l~~l~ 254 (571)
T 3cvr_A 249 SLSQQT 254 (571)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 777654
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.8e-19 Score=176.76 Aligned_cols=172 Identities=25% Similarity=0.318 Sum_probs=93.2
Q ss_pred ccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccc
Q 038393 75 LGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQ 154 (618)
Q Consensus 75 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 154 (618)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 42 ~~~l~~L~~L~l~~~~i~---------------~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIK---------------SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHHHTCCEEECTTSCCC---------------CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hhhcCcccEEEccCCCcc---------------cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 345666777777776663 121 25566666677776666664433 666666677777666665
Q ss_pred cccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCC
Q 038393 155 GEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFK 234 (618)
Q Consensus 155 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 234 (618)
+ + ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++. +.+..+++|++|++++|++++..+ +..
T Consensus 104 ~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~ 176 (291)
T 1h6t_A 104 D-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAG 176 (291)
T ss_dssp C-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcC
Confidence 3 2 2366666666666666666542 3455556666666666555432 222334444444444444433222 333
Q ss_pred CCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeeccccc
Q 038393 235 MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFS 298 (618)
Q Consensus 235 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 298 (618)
+++|++|++++|.+++. + .+..+++|+.|++++|.+.
T Consensus 177 -------------------------l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 177 -------------------------LTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -------------------------CTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred -------------------------CCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 44555555555554432 1 2455555555555555554
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=6.7e-19 Score=189.19 Aligned_cols=173 Identities=24% Similarity=0.311 Sum_probs=94.1
Q ss_pred ccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccc
Q 038393 75 LGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQ 154 (618)
Q Consensus 75 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 154 (618)
+..|++|+.|++++|.+. .+| .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+.
T Consensus 39 ~~~L~~L~~L~l~~n~i~---------------~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK---------------SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC---------------CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred hhcCCCCCEEECcCCCCC---------------CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence 345566666666666553 122 35556666666666666654433 566666666666666665
Q ss_pred cccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCC
Q 038393 155 GEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFK 234 (618)
Q Consensus 155 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 234 (618)
+ +| .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+++..| +..
T Consensus 101 ~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 101 D-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp C-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 3 22 456666666666666666532 3455566666666666655543 333455555555555555554333 455
Q ss_pred CCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccc
Q 038393 235 MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYG 275 (618)
Q Consensus 235 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 275 (618)
+++|+.|+|++|.+++ ++ .+ ..+++|+.|+|++|.+.+
T Consensus 174 l~~L~~L~Ls~N~i~~-l~-~l-~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISD-LR-AL-AGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCCEEECCSSCCCB-CG-GG-TTCTTCSEEECCSEEEEC
T ss_pred CCCCCEEECcCCCCCC-Ch-HH-ccCCCCCEEEccCCcCcC
Confidence 5555555555555552 22 12 235555555555555543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.4e-18 Score=170.31 Aligned_cols=174 Identities=23% Similarity=0.299 Sum_probs=111.1
Q ss_pred CCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEE
Q 038393 139 NVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLD 218 (618)
Q Consensus 139 ~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 218 (618)
.+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++. +.+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-GGGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-hhhccCCCCCEEE
Confidence 344444444444444321 1 24444444444444444443222 44444444444444444432 2234455566666
Q ss_pred cccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeeccccc
Q 038393 219 LSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFS 298 (618)
Q Consensus 219 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 298 (618)
+++|.+++. ..+..+++|+.|++++|++++ + .. +..+++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GG-GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hh-hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 666665542 345667788888888888874 3 23 3458999999999999986654 899999999999999998
Q ss_pred ccCCccccCCCCCCEEEcCCCCCccCcc
Q 038393 299 GAIPKEIGNLTKLEKLDLQFNRLRELSF 326 (618)
Q Consensus 299 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 326 (618)
+. + .+..+++|+.|++++|.+...+.
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CC-h-hhccCCCCCEEECcCCcccCCcc
Confidence 64 3 48999999999999999987653
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=3.7e-20 Score=204.15 Aligned_cols=230 Identities=21% Similarity=0.145 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHhhccCCCCCCCcccCCCCC-CCCCcceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCC
Q 038393 9 SITTDQQALLSLKGHVTEDPANFLARNWNT-SSSVCNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLS 87 (618)
Q Consensus 9 ~~~~~~~~ll~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls 87 (618)
....++++++++...........-. +|.. ...++.|.++.+. .++++.|+|.++++... +. ..|+.++|+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls 199 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQ-QPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEA-NQ-----ALLQHKKLS 199 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccC-CCcCCCCccccCCCceec--CCccceEEeeCCCCCcc-hh-----hHhhcCccC
Confidence 3566778888887665222211122 2533 3456789887765 36899999999988753 32 235556666
Q ss_pred CCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCC
Q 038393 88 FNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAEL 167 (618)
Q Consensus 88 ~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L 167 (618)
.|.+.+.... .|. ....|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|
T Consensus 200 ~~~i~~~~~~----~n~-~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 272 (727)
T 4b8c_D 200 QYSIDEDDDI----ENR-MVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL 272 (727)
T ss_dssp ---------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC
T ss_pred cccccCcccc----ccc-eecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC
Confidence 6665321000 000 0123445556666666666666665 45555556666666666666665 555556666666
Q ss_pred CEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCcc
Q 038393 168 EELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNG 247 (618)
Q Consensus 168 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 247 (618)
++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..+..+++|+.|+|++|.
T Consensus 273 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~------------------------~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 273 RVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT------------------------TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC------------------------CCCSSTTSCTTCCCEECTTSC
T ss_pred CEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC------------------------ccChhhhcCCCccEEeCCCCc
Confidence 66666666665 44555555555555555555554 344445556666666666666
Q ss_pred CcccCchhhhhcCCCCcEEEccCCcccccCCc
Q 038393 248 LSGELPANFCNNFPFLEELYLSKNMFYGEIPS 279 (618)
Q Consensus 248 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 279 (618)
+++.+|..+......+..++|++|.+++.+|.
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66555544432111122355666666655553
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6e-18 Score=158.55 Aligned_cols=147 Identities=27% Similarity=0.311 Sum_probs=97.7
Q ss_pred EEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccC
Q 038393 60 LNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGN 139 (618)
Q Consensus 60 L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 139 (618)
+++++++++ .+|..+. ++|++|++++|.+. +..+..|..+++|++|+|++|.+++..|..|.+
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~--------------~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK--------------VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCC--------------EECTTSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCC--------------CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 455566777 4565554 68888888888774 233445777788888888888887777777778
Q ss_pred CCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCC-CCCCCCccEEE
Q 038393 140 VTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPY-AGNLFQLQWLD 218 (618)
Q Consensus 140 l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~ 218 (618)
+++|++|+|++|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..+. +..+++|++|+
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 88888888888877755555567777777777777777776666677766666666666666544332 23334444444
Q ss_pred cccCc
Q 038393 219 LSDNQ 223 (618)
Q Consensus 219 l~~n~ 223 (618)
+++|+
T Consensus 159 L~~N~ 163 (220)
T 2v9t_B 159 LAQNP 163 (220)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 44443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=7.1e-18 Score=158.05 Aligned_cols=155 Identities=23% Similarity=0.252 Sum_probs=99.1
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcccc
Q 038393 59 ALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIG 138 (618)
Q Consensus 59 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 138 (618)
.++++++.++. +|..+. ..+++|+|++|.+++..| +..|.++++|++|+|++|.+++..+..|.
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~-------------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 78 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEA-------------TGIFKKLPQLRKINFSNNKITDIEEGAFE 78 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECC-------------CCCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCc-------------hhhhccCCCCCEEECCCCcCCEECHHHhC
Confidence 56777777774 565554 456788888887752111 12356677777777777777766666677
Q ss_pred CCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEE
Q 038393 139 NVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLD 218 (618)
Q Consensus 139 ~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 218 (618)
++++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|++++
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------- 143 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT--------------- 143 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC---------------
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE---------------
Confidence 77777777777777776666667777777777777777766666666666666666655555554
Q ss_pred cccCcCcccCCccCCCCCCCcEEeccCccCcccC
Q 038393 219 LSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGEL 252 (618)
Q Consensus 219 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 252 (618)
..|..+..+++|+.|++++|.+.+..
T Consensus 144 --------~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 144 --------VAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp --------BCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred --------ECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 44444555566666666666655433
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5.2e-18 Score=171.98 Aligned_cols=177 Identities=28% Similarity=0.252 Sum_probs=109.7
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCC-CCCCCCEEeccCccccccCCccc
Q 038393 59 ALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLS-NCKRLRNISLSLNDFSGTIPKEI 137 (618)
Q Consensus 59 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~ 137 (618)
.+++++++++. +|..+. +.++.|+|++|.++ +..+..+. ++++|++|+|++|++++..+..|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~--------------~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLS--------------RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCC--------------EECTTSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCC--------------ccChhhhhhcccccCEEECCCCcCCccChhhc
Confidence 46777777774 565554 45788888888774 22233454 67777777777777776666777
Q ss_pred cCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEE
Q 038393 138 GNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWL 217 (618)
Q Consensus 138 ~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 217 (618)
.++++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++.++...
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-------- 156 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI-------- 156 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGT--------
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHh--------
Confidence 777777777777777776666667777777777777777776666667776666666666666653222110
Q ss_pred EcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCC--CcEEEccCCcc
Q 038393 218 DLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPF--LEELYLSKNMF 273 (618)
Q Consensus 218 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~--L~~L~Ls~n~l 273 (618)
..+..+++|+.|+|++|+++ .+|...+..++. ++.|+|++|.+
T Consensus 157 ------------~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 157 ------------KDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp ------------C----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ------------cCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCc
Confidence 00034556666666666665 344333333443 24555555554
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1e-18 Score=187.75 Aligned_cols=173 Identities=27% Similarity=0.345 Sum_probs=116.5
Q ss_pred CCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCC
Q 038393 113 LSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLS 192 (618)
Q Consensus 113 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 192 (618)
+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+ + ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 45677788888888877643 3 57778888888888888775433 7777888888888887764 2 3577777777
Q ss_pred EEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCc
Q 038393 193 ILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNM 272 (618)
Q Consensus 193 ~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 272 (618)
+|+|++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCC
Confidence 777777777643 4455667777777777777643 455666777777777777664433 2346667777777776
Q ss_pred ccccCCccCCCCCCCcEEEeecccccc
Q 038393 273 FYGEIPSDLANCSYLRILVLQFNNFSG 299 (618)
Q Consensus 273 l~~~~~~~l~~l~~L~~L~l~~n~l~~ 299 (618)
+.+. ..+..+++|+.|+|++|.+.+
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 6643 346666666666666666654
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2e-18 Score=175.04 Aligned_cols=148 Identities=24% Similarity=0.259 Sum_probs=122.8
Q ss_pred CcceeeeeeCCC---------CCcEEEEEcCCCCCcccCCcccc-CCCCCCEEeCCCCCCCCcCCcccccCCcccccCCc
Q 038393 42 VCNWTGVTCDVR---------THRVTALNISGLNLTGTIPSELG-NLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPS 111 (618)
Q Consensus 42 ~c~w~gv~c~~~---------~~~v~~L~L~~~~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~ 111 (618)
.|.|..+.|... ...++.|+|++|++++..+..+. .+++|++|+|++|.+. +..+.
T Consensus 17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~--------------~i~~~ 82 (361)
T 2xot_A 17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN--------------FISSE 82 (361)
T ss_dssp EEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC--------------EECTT
T ss_pred EECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC--------------ccChh
Confidence 367777777532 24688999999999988888888 9999999999999985 33456
Q ss_pred cCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccc---cCC
Q 038393 112 TLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSI---FNL 188 (618)
Q Consensus 112 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l 188 (618)
.|.++++|++|+|++|.+++..+..|..+++|++|+|++|.|++..|..|..+++|++|+|++|.+++..+..+ ..+
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----C
T ss_pred hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccC
Confidence 78999999999999999998888889999999999999999998889999999999999999999996544444 456
Q ss_pred CCCCEEEeecccCcc
Q 038393 189 SSLSILDLSVNNLTG 203 (618)
Q Consensus 189 ~~L~~L~l~~n~l~~ 203 (618)
++|++|++++|+++.
T Consensus 163 ~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 163 PKLMLLDLSSNKLKK 177 (361)
T ss_dssp TTCCEEECCSSCCCC
T ss_pred CcCCEEECCCCCCCc
Confidence 666666666666653
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.1e-17 Score=157.85 Aligned_cols=155 Identities=24% Similarity=0.156 Sum_probs=124.4
Q ss_pred CCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcc
Q 038393 81 LQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEE 160 (618)
Q Consensus 81 L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~ 160 (618)
-+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|.+....+..
T Consensus 21 ~~~v~c~~~~l~---------------~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 83 (229)
T 3e6j_A 21 GTTVDCRSKRHA---------------SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83 (229)
T ss_dssp TTEEECTTSCCS---------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCEeEccCCCcC---------------ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh
Confidence 356788888774 3444333 78999999999999888888999999999999999998666667
Q ss_pred cCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcE
Q 038393 161 LGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQV 240 (618)
Q Consensus 161 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 240 (618)
|..+++|++|+|++|.+++..+..|..+++|++|++++|++...+..+..+++|++|++++|++++..+..+..+++|+.
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 88899999999999999877777788899999999999988866555577888888888888888666666777888888
Q ss_pred EeccCccCcccC
Q 038393 241 LDLSVNGLSGEL 252 (618)
Q Consensus 241 L~l~~n~l~~~~ 252 (618)
|++++|.+.+..
T Consensus 164 L~l~~N~~~c~c 175 (229)
T 3e6j_A 164 AYLFGNPWDCEC 175 (229)
T ss_dssp EECTTSCBCTTB
T ss_pred EEeeCCCccCCc
Confidence 888888776543
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.2e-18 Score=161.50 Aligned_cols=139 Identities=22% Similarity=0.253 Sum_probs=98.2
Q ss_pred CCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEE
Q 038393 334 KYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLS 413 (618)
Q Consensus 334 ~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 413 (618)
+.++.|++++|.+++..+..+..+. +|++|++++|.+.+..|..|..+++|++|+|++|++....+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 3445555555555444444444433 444444444444444555667777888888888888866666677888888888
Q ss_pred ccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCcc
Q 038393 414 FEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSST 473 (618)
Q Consensus 414 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 473 (618)
|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+.+..
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 888888877788888888888888888888887777788888888888888888776443
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=2.5e-18 Score=158.44 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=55.8
Q ss_pred CCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCC
Q 038393 113 LSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLS 192 (618)
Q Consensus 113 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 192 (618)
+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 445555555555555443 123455555555555555555554555555555555555555555554455555555555
Q ss_pred EEEeeccc-CcccCCCCCCCCCccEEEcccCcCc
Q 038393 193 ILDLSVNN-LTGTIPYAGNLFQLQWLDLSDNQLS 225 (618)
Q Consensus 193 ~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~ 225 (618)
+|++++|. +. .++....+++|++|++++|+++
T Consensus 140 ~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 140 SIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCC
T ss_pred EEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCc
Confidence 55555554 32 2222333444444444444443
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=4.3e-18 Score=156.80 Aligned_cols=150 Identities=14% Similarity=0.187 Sum_probs=129.3
Q ss_pred CcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCC
Q 038393 55 HRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIP 134 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 134 (618)
.+++.|++++|+++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~----------------~~~~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT----------------NYNPISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS----------------CCGGGTTCTTCCEEEEECTTCBGGGS
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC----------------cchhhhcCCCCCEEEeECCccCcccC
Confidence 46899999999998 455 6999999999999999763 23468899999999999999998889
Q ss_pred ccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCc-CcccCCccccCCCCCCEEEeecccCcccCCCCCCCCC
Q 038393 135 KEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNF-LTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQ 213 (618)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~ 213 (618)
..|+.+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++++. +....+++
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~ 182 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPK 182 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-TTGGGCSS
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-HHhccCCC
Confidence 999999999999999999998888999999999999999998 66 444 689999999999999999864 35567788
Q ss_pred ccEEEcccCcCc
Q 038393 214 LQWLDLSDNQLS 225 (618)
Q Consensus 214 L~~L~l~~n~l~ 225 (618)
|++|++++|++.
T Consensus 183 L~~L~l~~N~i~ 194 (197)
T 4ezg_A 183 LNQLYAFSQTIG 194 (197)
T ss_dssp CCEEEECBC---
T ss_pred CCEEEeeCcccC
Confidence 888888888765
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=4.6e-18 Score=159.32 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=101.3
Q ss_pred cEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEee
Q 038393 288 RILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIV 367 (618)
Q Consensus 288 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~ 367 (618)
+.+++++|.++. +|..+ .+.++.|++++|.++.++....+..+++|++|++++|.+++.
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i------------------ 72 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI------------------ 72 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE------------------
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE------------------
Confidence 356666666553 34333 233455666666555553323345555555555555555443
Q ss_pred ecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceecc
Q 038393 368 SCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFI 447 (618)
Q Consensus 368 ~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 447 (618)
.+..|..+++|++|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..
T Consensus 73 -------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 73 -------EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred -------CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence 3344556667777777777777666666777777777777777777777777777777777777777777777
Q ss_pred chhhhcccCCCceecCCCCCcCCCc
Q 038393 448 PACFGNLTYLKKLNLGSNQLTSTSS 472 (618)
Q Consensus 448 ~~~~~~l~~L~~L~l~~n~l~~~~~ 472 (618)
|..|..+++|+.|++++|++.+.+.
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEECSGG
T ss_pred HHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7777777777777777777776643
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=7e-21 Score=203.42 Aligned_cols=205 Identities=20% Similarity=0.151 Sum_probs=145.1
Q ss_pred CCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccc-------------cccccCcccCCCCCCCEEe-cccCcCcc
Q 038393 114 SNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQ-------------LQGEIPEELGNLAELEELW-LQNNFLTG 179 (618)
Q Consensus 114 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~p~~l~~l~~L~~L~-L~~n~l~~ 179 (618)
..+++|+.|+|++|.++ .+|+.++++++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56778888888888886 668888888888888876664 3445566666666666666 454433
Q ss_pred cCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhc
Q 038393 180 TIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNN 259 (618)
Q Consensus 180 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 259 (618)
.+|+.+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~- 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA- 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-
T ss_pred ---------chhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc-
Confidence 233444455555554332 247788888888875 455 777888888888888887 77776644
Q ss_pred CCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccC-CccccCCCCCCEEEcCCCCCccCcccc--ccCCCCCC
Q 038393 260 FPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAI-PKEIGNLTKLEKLDLQFNRLRELSFLS--SLSNCKYL 336 (618)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~--~l~~~~~L 336 (618)
+++|+.|+|++|.+++ +| .+..+++|++|++++|.+++.. |..++.+++|+.|++++|.++..+... .+..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 7888888888888875 45 6888888888888888888766 788888888888888888888775311 22347888
Q ss_pred CEEEc
Q 038393 337 KYFSL 341 (618)
Q Consensus 337 ~~L~l 341 (618)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 88764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=6.7e-18 Score=162.86 Aligned_cols=170 Identities=17% Similarity=0.188 Sum_probs=116.5
Q ss_pred CCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEE
Q 038393 116 CKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILD 195 (618)
Q Consensus 116 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 195 (618)
+.++..++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 445555666666665332 4666677777777777766 344 56667777777777777765433 66777777777
Q ss_pred eecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccc
Q 038393 196 LSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYG 275 (618)
Q Consensus 196 l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 275 (618)
+++|++++..+ ... ++|++|++++|++++. ..+..+++|+.|++++|++++ ++ . +..+++|++|++++|.+++
T Consensus 92 L~~N~l~~l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~-l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-M-LGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-G-GGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-H-HccCCCCCEEECCCCcCcc
Confidence 77777765433 222 7778888888877753 346778888888888888874 44 2 3447888888888888876
Q ss_pred cCCccCCCCCCCcEEEeeccccccc
Q 038393 276 EIPSDLANCSYLRILVLQFNNFSGA 300 (618)
Q Consensus 276 ~~~~~l~~l~~L~~L~l~~n~l~~~ 300 (618)
. ..+..+++|+.|++++|.+...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 5 5677888888888888888754
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=7.3e-18 Score=168.70 Aligned_cols=217 Identities=15% Similarity=0.100 Sum_probs=101.6
Q ss_pred CCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCC----CccCccccccCCCCC
Q 038393 260 FPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNR----LRELSFLSSLSNCKY 335 (618)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~~~l~~~~~ 335 (618)
+++|+.|+|.+ .++.+.+.+|.+|++|+.+++.+|.+....+.+|.++.++..+....+. ...+.. ..+..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-cccccccc
Confidence 56666666665 5555555556666666666666666655555566655555555444321 111111 22334445
Q ss_pred CC-EEEcccccCccccchhhhhc---cccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCce
Q 038393 336 LK-YFSLSNNLLDGILPRAIGNL---SQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQL 411 (618)
Q Consensus 336 L~-~L~ls~n~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 411 (618)
|+ .+.+.... ..+..+... ..+++.+.+.+. -...........+++|+.
T Consensus 178 L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~------------------------l~~~~~~~l~~~~~~L~~ 230 (329)
T 3sb4_A 178 LETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGK------------------------LDNADFKLIRDYMPNLVS 230 (329)
T ss_dssp CEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEEC------------------------CCHHHHHHHHHHCTTCCE
T ss_pred cceeEEecCCC---cHHHHHhhcccCccccceEEEeee------------------------ecHHHHHHHHHhcCCCeE
Confidence 54 33333211 111111110 113333333332 111000001112445555
Q ss_pred EEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCC-ceecCCCCCcCC-CccccccccCcEEeCcCCc
Q 038393 412 LSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLK-KLNLGSNQLTST-SSTLWNIKYILYLNLSSNS 489 (618)
Q Consensus 412 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~-~~~~~~~~~L~~L~ls~n~ 489 (618)
+++++|+++.+.+.+|.++++|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+ +..+..+++|+.+++++|.
T Consensus 231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp EECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred EECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 555555555444445555555555555554 4444455555555555 555555 44444 3445555555566655555
Q ss_pred ceecCCCCCcccccceee
Q 038393 490 FTGSLPLGIGNLKVLVQI 507 (618)
Q Consensus 490 l~~~~p~~l~~l~~L~~l 507 (618)
++...+..|.++++|+.+
T Consensus 309 i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 309 ITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CCEECTTTTCTTCCCCEE
T ss_pred cCccchhhhcCCcchhhh
Confidence 555555556555555554
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=4e-20 Score=197.52 Aligned_cols=205 Identities=22% Similarity=0.252 Sum_probs=159.1
Q ss_pred cCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCc-------------CcccCCccccCCCCCCEEE-eecccCcc
Q 038393 138 GNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNF-------------LTGTIPSSIFNLSSLSILD-LSVNNLTG 203 (618)
Q Consensus 138 ~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~l~~ 203 (618)
...++|+.|+|++|++. .+|..++.+++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56788999999999987 789999999999999987764 4556677778888888887 6666543
Q ss_pred cCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCC
Q 038393 204 TIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLAN 283 (618)
Q Consensus 204 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~ 283 (618)
.|+.+.+++|.++...+ ..|+.|++++|.++ .+|. + ..+++|+.|+|++|.++ .+|..+..
T Consensus 424 ---------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~-~lp~-~-~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------hhhhhhhhcccccccCc------cCceEEEecCCCCC-CCcC-c-cccccCcEeecCccccc-ccchhhhc
Confidence 45666677777664322 25889999999998 4675 4 45889999999999998 67888999
Q ss_pred CCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchh--hhhccccc
Q 038393 284 CSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRA--IGNLSQSI 361 (618)
Q Consensus 284 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~~~~~L 361 (618)
+++|++|++++|.+++ +| .++.+++|+.|++++|.++.++.+..+..+++|+.|++++|++++.++.. +....++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 9999999999999986 56 78899999999999999998842277888999999999999998876532 22222377
Q ss_pred cEEE
Q 038393 362 EEFW 365 (618)
Q Consensus 362 ~~L~ 365 (618)
+.|+
T Consensus 563 ~~L~ 566 (567)
T 1dce_A 563 SSIL 566 (567)
T ss_dssp SEEE
T ss_pred CccC
Confidence 7765
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.5e-17 Score=160.29 Aligned_cols=164 Identities=25% Similarity=0.349 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcc
Q 038393 57 VTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKE 136 (618)
Q Consensus 57 v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 136 (618)
++.++++++.+++.. .+..+++|++|++++|.+. .+| .+..+++|++|+|++|.+++..+
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~---------------~l~-~l~~l~~L~~L~L~~N~i~~~~~-- 80 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ---------------SLA-GMQFFTNLKELHLSHNQISDLSP-- 80 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC---------------CCT-TGGGCTTCCEEECCSSCCCCCGG--
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc---------------cch-HHhhCCCCCEEECCCCccCCChh--
Confidence 444556666665433 3566667777777776664 222 35566666666666666664433
Q ss_pred ccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccE
Q 038393 137 IGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQW 216 (618)
Q Consensus 137 ~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 216 (618)
+..+++|++|++++|++++ +|. +.. ++|++|++++|.+++. ..+..+++|++|++++|++++. +....+++|++
T Consensus 81 l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~ 154 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEV 154 (263)
T ss_dssp GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCE
T ss_pred hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCE
Confidence 6666666666666666653 232 222 5666666666666542 2355555555555555555432 22334444444
Q ss_pred EEcccCcCcccCCccCCCCCCCcEEeccCccC
Q 038393 217 LDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGL 248 (618)
Q Consensus 217 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 248 (618)
|++++|++++. ..+..+++|+.|++++|.+
T Consensus 155 L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 155 LDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 44444444432 2233333444444444333
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=1e-17 Score=167.59 Aligned_cols=219 Identities=12% Similarity=0.071 Sum_probs=110.2
Q ss_pred CCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccc----cccCCccccCCCC
Q 038393 235 MPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNF----SGAIPKEIGNLTK 310 (618)
Q Consensus 235 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~~~~l~~ 310 (618)
+++|+.|++.. .++ .++...|..+++|+++++++|.+....+..|..+.++..+....+.. .......|..+..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 67777777776 665 55555556677777777777776666666677666666555443211 1122334555555
Q ss_pred CC-EEEcCCCCCccCcc--ccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccce
Q 038393 311 LE-KLDLQFNRLRELSF--LSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIA 387 (618)
Q Consensus 311 L~-~L~L~~n~l~~~~~--~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 387 (618)
|+ .+.+.... .++. ........++..+.+.++-. ......+.. .+++|+.
T Consensus 178 L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~l~~------------------------~~~~L~~ 230 (329)
T 3sb4_A 178 LETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLD-NADFKLIRD------------------------YMPNLVS 230 (329)
T ss_dssp CEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCC-HHHHHHHHH------------------------HCTTCCE
T ss_pred cceeEEecCCC--cHHHHHhhcccCccccceEEEeeeec-HHHHHHHHH------------------------hcCCCeE
Confidence 55 34443221 1110 00111234566666655421 111111111 2344555
Q ss_pred eeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCC-eEEcCCCcceeccchhhhcccCCCceecCCCC
Q 038393 388 IYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALF-QLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQ 466 (618)
Q Consensus 388 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 466 (618)
+++++|++.......|.++++|+.+++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.
T Consensus 231 l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 231 LDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp EECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred EECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 555555555444445555555555555554 4444445555555555 555555 4444445555555555555555555
Q ss_pred CcCC-CccccccccCcEEe
Q 038393 467 LTST-SSTLWNIKYILYLN 484 (618)
Q Consensus 467 l~~~-~~~~~~~~~L~~L~ 484 (618)
++.+ ...+.++++|+.++
T Consensus 309 i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 309 ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEECTTTTCTTCCCCEEE
T ss_pred cCccchhhhcCCcchhhhc
Confidence 5555 33444455555443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=5.8e-17 Score=148.37 Aligned_cols=131 Identities=22% Similarity=0.292 Sum_probs=108.9
Q ss_pred EEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCc-cCCCCCCCCEEeccCccccccCCcc
Q 038393 58 TALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPS-TLSNCKRLRNISLSLNDFSGTIPKE 136 (618)
Q Consensus 58 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~ 136 (618)
+.+++++++++ .+|..+.. +|++|++++|.+.+ ..+. .++++++|++|+|++|.+++..|..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~--------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 73 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGR--------------ISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCS--------------BCCSCSGGGCTTCCEEECCSSCCCCBCTTT
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCc--------------cCCccccccCCCCCEEECCCCCCCCcCHhH
Confidence 35677788886 56665544 89999999998852 2222 3778899999999999999888999
Q ss_pred ccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccC
Q 038393 137 IGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTI 205 (618)
Q Consensus 137 ~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 205 (618)
|.++++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..+..+++|++|++++|.+.+..
T Consensus 74 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 74 FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 999999999999999999888888999999999999999999888888999999999999999887543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.3e-16 Score=141.20 Aligned_cols=84 Identities=26% Similarity=0.243 Sum_probs=38.3
Q ss_pred CCCCEEeccCcccc-ccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEE
Q 038393 117 KRLRNISLSLNDFS-GTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILD 195 (618)
Q Consensus 117 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 195 (618)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444444 33444444444444444444444432 3444444444444444444443444343444444444
Q ss_pred eecccCc
Q 038393 196 LSVNNLT 202 (618)
Q Consensus 196 l~~n~l~ 202 (618)
+++|.++
T Consensus 102 Ls~N~l~ 108 (168)
T 2ell_A 102 LSGNKLK 108 (168)
T ss_dssp CBSSSCC
T ss_pred ccCCccC
Confidence 4444443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=4.6e-17 Score=179.46 Aligned_cols=189 Identities=23% Similarity=0.301 Sum_probs=118.1
Q ss_pred EcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccc
Q 038393 218 DLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNF 297 (618)
Q Consensus 218 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 297 (618)
++..|.+. ..+..+..++.|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+|..|..+++|++|+|++|.+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 34444444 45677788899999999999988 78877774 899999999999998 7788899999999999999999
Q ss_pred cccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCch
Q 038393 298 SGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPE 377 (618)
Q Consensus 298 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 377 (618)
+ .+|..|+.+++|++|+|++|.++.+| ..+..+++|++|+|++|.+++.+|..+.........+++.+|.+.+.+|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVTTLP--WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCCCCC--SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred C-ccChhhcCCCCCCEEECCCCCCCccC--hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 8 67888999999999999999999887 55889999999999999999988888766543334466777777776664
Q ss_pred hhhcccccceeeeCCc--------ccccccCccccccCCCceEEcccccc
Q 038393 378 EISNLTNLIAIYLGGN--------KLNGTIPITLGKLQKLQLLSFEDNQL 419 (618)
Q Consensus 378 ~~~~l~~L~~L~L~~n--------~i~~~~~~~~~~l~~L~~L~L~~n~l 419 (618)
.|+.|+++.| .+.+..+..+..+..+....+++|-+
T Consensus 360 ------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 360 ------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp ------C-----------------------------------------CC
T ss_pred ------ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 3445556555 22222333334444555555666654
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=3.9e-16 Score=139.66 Aligned_cols=130 Identities=25% Similarity=0.212 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCCc-ccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCC
Q 038393 56 RVTALNISGLNLT-GTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIP 134 (618)
Q Consensus 56 ~v~~L~L~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 134 (618)
+++.|++++|+++ +.+|..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++.+|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~---------------~-~~~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---------------V-SNLPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC---------------C-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC---------------h-hhhccCCCCCEEECcCCcCchHHH
Confidence 4455555555554 3444444455555555555554421 1 234444444555555444444344
Q ss_pred ccccCCCCCcEEEeecccccccc-CcccCCCCCCCEEecccCcCcccCC---ccccCCCCCCEEEeecccC
Q 038393 135 KEIGNVTKLIGLYLRGNQLQGEI-PEELGNLAELEELWLQNNFLTGTIP---SSIFNLSSLSILDLSVNNL 201 (618)
Q Consensus 135 ~~~~~l~~L~~L~L~~n~i~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l 201 (618)
..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 44444444444444444444221 1344444444444444444443222 2344444444444444443
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=4.1e-16 Score=142.68 Aligned_cols=160 Identities=22% Similarity=0.295 Sum_probs=115.2
Q ss_pred CEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeC
Q 038393 312 EKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLG 391 (618)
Q Consensus 312 ~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 391 (618)
+.+++++|.++.+|. .+. .++++|++++|.+++..+. ..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~ip~--~~~--~~l~~L~l~~n~i~~~~~~------------------------~~~~~l~~L~~L~Ls 62 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR--DIP--LHTTELLLNDNELGRISSD------------------------GLFGRLPHLVKLELK 62 (192)
T ss_dssp TEEECTTSCCSSCCS--CCC--TTCSEEECCSCCCCSBCCS------------------------CSGGGCTTCCEEECC
T ss_pred CEEEcCCCCcCcCcc--CCC--CCCCEEECCCCcCCccCCc------------------------cccccCCCCCEEECC
Confidence 577778887777763 222 2667777777766544332 135677788888888
Q ss_pred CcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCC
Q 038393 392 GNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTS 471 (618)
Q Consensus 392 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 471 (618)
+|++.+..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..|..|..+++|+.|++++|++.+..
T Consensus 63 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 63 RNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 88888887888888888888888888888888877888888999999999988888888888889999999999888775
Q ss_pred ccccccccCcEEeCcCCcceecCCCCCc
Q 038393 472 STLWNIKYILYLNLSSNSFTGSLPLGIG 499 (618)
Q Consensus 472 ~~~~~~~~L~~L~ls~n~l~~~~p~~l~ 499 (618)
...|....++...+..+......|..+.
T Consensus 143 ~l~~~~~~l~~~~~~~~~~~C~~P~~l~ 170 (192)
T 1w8a_A 143 HLAWFAEWLRKKSLNGGAARCGAPSKVR 170 (192)
T ss_dssp GGHHHHHHHHHHCCSGGGCBBCSSTTTT
T ss_pred cchHHHHHHHHcCCCCCCCCCCCChHHc
Confidence 4444333344334444444444454443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2.2e-15 Score=137.81 Aligned_cols=126 Identities=30% Similarity=0.346 Sum_probs=100.2
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcccc
Q 038393 59 ALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIG 138 (618)
Q Consensus 59 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 138 (618)
.+++++++++ .+|..+. ++|++|++++|.++ .+|..+.++++|++|+|++|.+++..+..|.
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~---------------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~ 75 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT---------------LVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC---------------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc---------------hhHHHhhcccCCCEEECCCCcCCEeCHhHcc
Confidence 4667777777 4555443 58899999999885 4566788888888888888888877778888
Q ss_pred CCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCc
Q 038393 139 NVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLT 202 (618)
Q Consensus 139 ~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 202 (618)
++++|++|+|++|++++..|..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8888888888888888777778888888888888888888666666778888888888887765
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=2.9e-16 Score=137.47 Aligned_cols=127 Identities=24% Similarity=0.234 Sum_probs=92.1
Q ss_pred CcEEEEEcCCCCCc-ccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccC
Q 038393 55 HRVTALNISGLNLT-GTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTI 133 (618)
Q Consensus 55 ~~v~~L~L~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 133 (618)
.+++.|++++|.++ +.+|..+..+++|++|++++|.+.+ + ..++++++|++|++++|.+++.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~-~~~~~l~~L~~L~Ls~n~i~~~~ 80 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---------------I-ANLPKLNKLKKLELSDNRVSGGL 80 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC---------------C-TTCCCCTTCCEEECCSSCCCSCT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC---------------c-hhhhcCCCCCEEECCCCcccchH
Confidence 46778888888887 6777777788888888888887741 1 45677778888888888877666
Q ss_pred CccccCCCCCcEEEeeccccccc-cCcccCCCCCCCEEecccCcCcccCC---ccccCCCCCCEEEee
Q 038393 134 PKEIGNVTKLIGLYLRGNQLQGE-IPEELGNLAELEELWLQNNFLTGTIP---SSIFNLSSLSILDLS 197 (618)
Q Consensus 134 ~~~~~~l~~L~~L~L~~n~i~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~ 197 (618)
|..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777888888888877753 33667777777778777777775544 356677777777665
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=3.9e-15 Score=134.41 Aligned_cols=133 Identities=28% Similarity=0.330 Sum_probs=97.7
Q ss_pred cceeeeeeCCCCCcEEEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEE
Q 038393 43 CNWTGVTCDVRTHRVTALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNI 122 (618)
Q Consensus 43 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L 122 (618)
|.|.++.|. +++++. +|..+ .++|++|++++|.+. +..+..+.++++|++|
T Consensus 7 C~~~~l~~~------------~~~l~~-~p~~~--~~~l~~L~l~~n~l~--------------~~~~~~~~~l~~L~~L 57 (177)
T 2o6r_A 7 CSGTEIRCN------------SKGLTS-VPTGI--PSSATRLELESNKLQ--------------SLPHGVFDKLTQLTKL 57 (177)
T ss_dssp EETTEEECC------------SSCCSS-CCTTC--CTTCSEEECCSSCCC--------------CCCTTTTTTCTTCSEE
T ss_pred eCCCEEEec------------CCCCcc-CCCCC--CCCCcEEEeCCCccc--------------EeCHHHhcCcccccEE
Confidence 677776664 345553 34333 368899999998884 2233456788888888
Q ss_pred eccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCc
Q 038393 123 SLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLT 202 (618)
Q Consensus 123 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 202 (618)
++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 58 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 58 SLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 88888888776677788888888888888888666666788888888888888888655555677788888888887776
Q ss_pred cc
Q 038393 203 GT 204 (618)
Q Consensus 203 ~~ 204 (618)
+.
T Consensus 138 ~~ 139 (177)
T 2o6r_A 138 CS 139 (177)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=5.3e-14 Score=143.58 Aligned_cols=264 Identities=13% Similarity=0.119 Sum_probs=162.2
Q ss_pred CCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEe
Q 038393 117 KRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDL 196 (618)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 196 (618)
..++.+.+.. .++.+....|.+. +|+.+.+..+ ++.+...+|.+ .+|+.+.+.. .++...+.+|.++++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4555555543 2444445556653 5777776655 55455556666 3577777765 455555566777777777777
Q ss_pred ecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCccccc
Q 038393 197 SVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGE 276 (618)
Q Consensus 197 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 276 (618)
.+|.++..........+|+.+.+..+ ++......|.++++|+.+++..+ ++ .++...+.. .+|+.+.+. +.++..
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEE
Confidence 77766655544434566777777643 55555666777777777777764 44 455555554 677777773 445555
Q ss_pred CCccCCCCCCCcEEEeeccccc-----ccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccc
Q 038393 277 IPSDLANCSYLRILVLQFNNFS-----GAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILP 351 (618)
Q Consensus 277 ~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~ 351 (618)
....|.+|++|+.+++.+|.+. ...+.+|.++++|+.+.+. +.++.++. ..|.+|.+|+.+.+..+ ++.+..
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEECTT-CCEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEECcc-ccEEcH
Confidence 6667777778888877776654 3445567777777777776 34665554 55666677777666443 333322
Q ss_pred hhhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccC-CCceEEcccccc
Q 038393 352 RAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQ-KLQLLSFEDNQL 419 (618)
Q Consensus 352 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l 419 (618)
..|.++ +|+.+++.+|.+.......|.+++ +++.|++..+.+
T Consensus 340 -------------------------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 340 -------------------------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -------------------------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -------------------------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 345556 667777776666655555566653 567777766654
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=3.4e-14 Score=145.07 Aligned_cols=272 Identities=12% Similarity=0.063 Sum_probs=173.1
Q ss_pred CCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEE
Q 038393 212 FQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILV 291 (618)
Q Consensus 212 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 291 (618)
..++.+.+.. .++......|.+ .+|+.+.+..+ ++ .++...+.. .+|+.+.+.. .+....+..|.+|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~-~~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRN-SQIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTT-CCCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhccc-CCccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4556666644 344444555655 47888888766 55 555555554 4688888875 56666667788888888888
Q ss_pred eecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeeccc
Q 038393 292 LQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNI 371 (618)
Q Consensus 292 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~ 371 (618)
+..|.++......|. ..+|+.+.+..+ ++.++. ..|.+|++|+.+++..+ ++.+...+|.. .+++.+.+
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~-~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~l----- 255 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGS-QAFLKTSQLKTIEIPEN-VSTIGQEAFRE--SGITTVKL----- 255 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECT-TTTTTCTTCCCEECCTT-CCEECTTTTTT--CCCSEEEE-----
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehh-hHhhCCCCCCEEecCCC-ccCcccccccc--CCccEEEe-----
Confidence 888888766666666 578888888744 666665 67778888888888764 45454444444 14444444
Q ss_pred ccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccc-----cCCchhhhcCCCCCeEEcCCCcceec
Q 038393 372 SGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLE-----GSIPNDLCRLAALFQLDLGGNMLSGF 446 (618)
Q Consensus 372 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~ 446 (618)
.+.+.......|.++++|+.+++.+|.+. .+.+.+|.++++|+.+++. +.+..+
T Consensus 256 --------------------p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I 314 (401)
T 4fdw_A 256 --------------------PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRIL 314 (401)
T ss_dssp --------------------ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEE
T ss_pred --------------------CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEE
Confidence 22233334445555555555555555443 3445566667777777776 346656
Q ss_pred cchhhhcccCCCceecCCCCCcCC-CccccccccCcEEeCcCCcceecCCCCCcccc-cceeeccccchhhhhhhcccc
Q 038393 447 IPACFGNLTYLKKLNLGSNQLTST-SSTLWNIKYILYLNLSSNSFTGSLPLGIGNLK-VLVQIDLSMNNFSELFQATNE 523 (618)
Q Consensus 447 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~l~l~~n~l~~l~~at~~ 523 (618)
...+|.+|++|+.+.+..| ++.+ ...+..+ +|+.+++++|.+....+..|..++ .++.+.+..+.++....|..|
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y~~a~~W 391 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYKNANGW 391 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHHHHSTTG
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHhhhccch
Confidence 6667777777777777544 5444 4455556 777777777776655556666663 677888888877766655443
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=6.3e-16 Score=135.28 Aligned_cols=82 Identities=21% Similarity=0.217 Sum_probs=34.0
Q ss_pred CCCEEeccCcccc-ccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEe
Q 038393 118 RLRNISLSLNDFS-GTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDL 196 (618)
Q Consensus 118 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 196 (618)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444443 33344444444444444444444322 33444444444444444444333333333344444444
Q ss_pred ecccC
Q 038393 197 SVNNL 201 (618)
Q Consensus 197 ~~n~l 201 (618)
++|.+
T Consensus 96 s~N~i 100 (149)
T 2je0_A 96 SGNKI 100 (149)
T ss_dssp TTSCC
T ss_pred CCCcC
Confidence 43333
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=132.80 Aligned_cols=124 Identities=23% Similarity=0.304 Sum_probs=83.0
Q ss_pred CEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCccc
Q 038393 82 QTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEEL 161 (618)
Q Consensus 82 ~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l 161 (618)
+++++++|.+. .+|..+. ++|++|+|++|.++ .+|..|.++++|++|+|++|.|++..+..|
T Consensus 13 ~~l~~~~~~l~---------------~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f 74 (193)
T 2wfh_A 13 TVVRCSNKGLK---------------VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSF 74 (193)
T ss_dssp TEEECTTSCCS---------------SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred CEEEcCCCCCC---------------cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHc
Confidence 57788888775 3333332 46788888888877 566777778888888888888876666777
Q ss_pred CCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCC-CCCCCCccEEEcccCc
Q 038393 162 GNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPY-AGNLFQLQWLDLSDNQ 223 (618)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~ 223 (618)
..+++|++|+|++|.+++..+..|..+++|++|++++|.++..++. +..+++|++|++++|.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 7777888888888777776666677777777777777766644332 2334444444444443
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=4.4e-15 Score=133.85 Aligned_cols=142 Identities=21% Similarity=0.208 Sum_probs=117.6
Q ss_pred hhcccccceeeeCCcccccccCcccccc-CCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCC
Q 038393 379 ISNLTNLIAIYLGGNKLNGTIPITLGKL-QKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYL 457 (618)
Q Consensus 379 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 457 (618)
+..+.+|+.|++++|.+... +. +..+ ++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45678899999999998843 44 4444 4999999999999865 578889999999999999998777777999999
Q ss_pred CceecCCCCCcCCCc--cccccccCcEEeCcCCcceecCCCC----Ccccccceeeccccchhhhhhhcccccc
Q 038393 458 KKLNLGSNQLTSTSS--TLWNIKYILYLNLSSNSFTGSLPLG----IGNLKVLVQIDLSMNNFSELFQATNEFS 525 (618)
Q Consensus 458 ~~L~l~~n~l~~~~~--~~~~~~~L~~L~ls~n~l~~~~p~~----l~~l~~L~~l~l~~n~l~~l~~at~~~~ 525 (618)
+.|++++|.++..+. .+..+++|++|++++|+++ ..|.. +..++.|+.+|++.|..++...|...|.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~~~ 163 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFK 163 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHHTTC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHHHHh
Confidence 999999999988765 7778899999999999998 45554 7889999999999999988776655443
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3.1e-14 Score=128.47 Aligned_cols=114 Identities=24% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEe
Q 038393 117 KRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDL 196 (618)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 196 (618)
++|++|++++|.+++..+..|+.+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45666666666666554555566666666666666665444444555566666666666555444444445555555555
Q ss_pred ecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCc
Q 038393 197 SVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELP 253 (618)
Q Consensus 197 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 253 (618)
++| .+++..+..+..+++|++|++++|.+.+..+
T Consensus 108 ~~N-----------------------~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTN-----------------------QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSS-----------------------CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCC-----------------------cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 554 4443333444556666667777766665443
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=3.5e-13 Score=138.18 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=34.9
Q ss_pred hcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCc
Q 038393 380 SNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKK 459 (618)
Q Consensus 380 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 459 (618)
..+.+|+.+.+..+ +......+|.++.+|+.+++.++ ++.+...+|.++.+|+.+++..+ ++.+...+|.+|++|+.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK 370 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence 34444444444332 22233334444445555544322 33333444444555555554433 33344444444444444
Q ss_pred eec
Q 038393 460 LNL 462 (618)
Q Consensus 460 L~l 462 (618)
+++
T Consensus 371 i~l 373 (394)
T 4fs7_A 371 VEL 373 (394)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.1e-14 Score=131.15 Aligned_cols=58 Identities=24% Similarity=0.219 Sum_probs=22.7
Q ss_pred CCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcC
Q 038393 118 RLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFL 177 (618)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l 177 (618)
+|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 444444444444322 2334444444444444444322222223344444444444444
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=1.3e-12 Score=133.91 Aligned_cols=335 Identities=14% Similarity=0.027 Sum_probs=183.1
Q ss_pred CcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEE
Q 038393 67 LTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGL 146 (618)
Q Consensus 67 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 146 (618)
++.+...+|.++.+|+.+.+..+ ++ ..-..+|.++++|+.+++..+ ++.+....|.++++|+.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~--------------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i 122 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR--------------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSI 122 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC--------------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc--------------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhh
Confidence 44455567777888888877643 32 122345677777888777654 554555667777777776
Q ss_pred EeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcc
Q 038393 147 YLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSG 226 (618)
Q Consensus 147 ~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 226 (618)
.+..+ +......+|.++..++...... +......+|.++++|+.+.+..+...-....+..+.+|+.+.+..+ ++.
T Consensus 123 ~~p~~-l~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~ 198 (394)
T 4fs7_A 123 LLPLM-LKSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKI 198 (394)
T ss_dssp CCCTT-CCEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCE
T ss_pred cccCc-eeeecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceE
Confidence 66543 3334445565554333322222 2223345566677777776654432211112244556666666544 333
Q ss_pred cCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCcccc
Q 038393 227 SFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIG 306 (618)
Q Consensus 227 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 306 (618)
.....+.++..|+.+.+..+... +...++. ...|+.+.+... ++......+..+..++.+.+..+... .....|.
T Consensus 199 I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~ 273 (394)
T 4fs7_A 199 IRDYCFAECILLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFY 273 (394)
T ss_dssp ECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTT
T ss_pred eCchhhccccccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccc
Confidence 34445555666666655544322 1222222 345666655433 22233445556666666666554332 3344555
Q ss_pred CCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccc
Q 038393 307 NLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLI 386 (618)
Q Consensus 307 ~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 386 (618)
.+..++.+....+.+.. ..+..+.+|+.+.+..+ ++ ......|.++++|+
T Consensus 274 ~~~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~~~-i~-------------------------~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 274 NCSGLKKVIYGSVIVPE----KTFYGCSSLTEVKLLDS-VK-------------------------FIGEEAFESCTSLV 323 (394)
T ss_dssp TCTTCCEEEECSSEECT----TTTTTCTTCCEEEECTT-CC-------------------------EECTTTTTTCTTCC
T ss_pred cccccceeccCceeecc----ccccccccccccccccc-cc-------------------------eechhhhcCCCCCC
Confidence 55555555554433222 23445555555554332 22 22234566777777
Q ss_pred eeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCce
Q 038393 387 AIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKL 460 (618)
Q Consensus 387 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 460 (618)
.+++..+ +......+|.++.+|+.+++..+ ++.+...+|.++.+|+.+++..+ +. .....|.++++|+.+
T Consensus 324 ~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 324 SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 7777644 55555677788888888888766 66566677888888888888654 22 223467777766643
No 139
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.49 E-value=2.5e-14 Score=139.50 Aligned_cols=84 Identities=23% Similarity=0.369 Sum_probs=71.3
Q ss_pred ccccccccccCCcceeEEEEec------CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ------DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~------~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
+|.....+|+|+||.||+|.+. +|..||||+++.......++|.+|+++|++++|||||+++|+|.+++..+||
T Consensus 14 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV 93 (299)
T 4asz_A 14 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMV 93 (299)
T ss_dssp GEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence 4555567999999999999863 4788999999866555667899999999999999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||| +|+|.+
T Consensus 94 ~Ey~~~G~L~~ 104 (299)
T 4asz_A 94 FEYMKHGDLNK 104 (299)
T ss_dssp EECCTTCBHHH
T ss_pred EEcCCCCcHHH
Confidence 9998 889876
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.4e-16 Score=146.78 Aligned_cols=116 Identities=27% Similarity=0.354 Sum_probs=68.7
Q ss_pred ccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccc
Q 038393 75 LGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQ 154 (618)
Q Consensus 75 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 154 (618)
+.....++.++++.+.+.+.+|. -..+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|.++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~--------l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~ 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPP--------IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTT--------CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred HHhcccccCcchheeEeccccCc--------HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence 33445555556665555443332 12344456666677777777776664 44 6666677777777777666
Q ss_pred cccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcc
Q 038393 155 GEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTG 203 (618)
Q Consensus 155 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 203 (618)
.+|..+..+++|++|++++|.+++ +| .+..+++|++|++++|++.+
T Consensus 84 -~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 84 -KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp -SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred -cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence 455555556666666666666664 23 45556666666666666553
No 141
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=140.82 Aligned_cols=84 Identities=19% Similarity=0.362 Sum_probs=73.3
Q ss_pred ccccccccccCCcceeEEEEec------CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ------DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~------~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
++.....+|+|+||.||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+++..+||
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV 121 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMV 121 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 4555567999999999999864 4788999999866555667899999999999999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||| +|+|.+
T Consensus 122 ~Ey~~~G~L~~ 132 (329)
T 4aoj_A 122 FEYMRHGDLNR 132 (329)
T ss_dssp EECCTTCBHHH
T ss_pred EEcCCCCcHHH
Confidence 9998 889865
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=4.6e-13 Score=119.58 Aligned_cols=103 Identities=25% Similarity=0.345 Sum_probs=52.6
Q ss_pred EEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCcccc
Q 038393 59 ALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIG 138 (618)
Q Consensus 59 ~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 138 (618)
.+++++++++. +|..+. ++|++|+|++|.++ +..|..|.++++|++|+|++|++++..+..|.
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~--------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 75 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQIT--------------KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCC--------------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCC--------------ccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence 45556666653 444332 55666666666553 22233445555555555555555544444445
Q ss_pred CCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCc
Q 038393 139 NVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLT 178 (618)
Q Consensus 139 ~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~ 178 (618)
.+++|++|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555555555555555433334555555555555555443
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.3e-15 Score=138.50 Aligned_cols=134 Identities=20% Similarity=0.227 Sum_probs=105.0
Q ss_pred hhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccC
Q 038393 377 EEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTY 456 (618)
Q Consensus 377 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 456 (618)
..+..+++|++|++++|.+.+ +| .+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++. | .+..+++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~ 116 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVN 116 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCC
Confidence 377788888888888888876 45 7788888888888888887 5677777778888888888888864 3 5788888
Q ss_pred CCceecCCCCCcCCC--ccccccccCcEEeCcCCcceecCCCC----------Ccccccceeeccccchhhhh
Q 038393 457 LKKLNLGSNQLTSTS--STLWNIKYILYLNLSSNSFTGSLPLG----------IGNLKVLVQIDLSMNNFSEL 517 (618)
Q Consensus 457 L~~L~l~~n~l~~~~--~~~~~~~~L~~L~ls~n~l~~~~p~~----------l~~l~~L~~l~l~~n~l~~l 517 (618)
|+.|++++|+++..+ ..+..+++|++|++++|++.+..|.. +..++.|+.+| ++.+++.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 899999988888764 35677888999999999887766553 66788888887 5666543
No 144
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.43 E-value=1e-13 Score=135.78 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=67.6
Q ss_pred cccccCCcceeEEEEec------CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 528 NLIGRGGIGSVYKARIQ------DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~~------~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..+|+|+||.||+|.+. .++.||||++.... ....++|.+|+.++++++|||||+++|+|.+++..+||||||
T Consensus 32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~ 111 (308)
T 4gt4_A 32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYC 111 (308)
T ss_dssp EEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcC
Confidence 46999999999999863 46889999996543 233567999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 112 ~~G~L~~ 118 (308)
T 4gt4_A 112 SHGDLHE 118 (308)
T ss_dssp SSCBHHH
T ss_pred CCCcHHH
Confidence 899876
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=8.5e-13 Score=118.22 Aligned_cols=104 Identities=22% Similarity=0.301 Sum_probs=55.0
Q ss_pred EEEEcCCCCCcccCCccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccc
Q 038393 58 TALNISGLNLTGTIPSELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEI 137 (618)
Q Consensus 58 ~~L~L~~~~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 137 (618)
+.+++++++++ .+|..+. ++|++|+|++|.+. +..|..|.++++|++|+|++|++++..+..|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~--------------~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 77 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT--------------KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC--------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc--------------ccCHHHhcCCcCCCEEECCCCCCCccChhHh
Confidence 34666666665 4444443 56666666666653 2233445555555555555555554444444
Q ss_pred cCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCc
Q 038393 138 GNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLT 178 (618)
Q Consensus 138 ~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~ 178 (618)
..+++|++|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 55555555555555555333333555555555555555544
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.9e-12 Score=115.48 Aligned_cols=108 Identities=24% Similarity=0.193 Sum_probs=95.6
Q ss_pred CCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcc
Q 038393 81 LQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEE 160 (618)
Q Consensus 81 L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~ 160 (618)
.+.+++++|.++ .+|..+ .++|++|+|++|.+++..|..|.++++|++|+|++|+|++..+..
T Consensus 11 ~~~l~~s~n~l~---------------~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 73 (170)
T 3g39_A 11 GTTVDCSGKSLA---------------SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73 (170)
T ss_dssp TTEEECTTSCCS---------------SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred CCEEEeCCCCcC---------------ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh
Confidence 478999999986 345444 378999999999999888999999999999999999999777777
Q ss_pred cCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccC
Q 038393 161 LGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTI 205 (618)
Q Consensus 161 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 205 (618)
|..+++|++|+|++|.+++..+..|..+++|++|++++|.+....
T Consensus 74 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 74 FDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 899999999999999999877778999999999999999987543
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2.2e-12 Score=115.52 Aligned_cols=107 Identities=20% Similarity=0.238 Sum_probs=94.2
Q ss_pred CEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCccc
Q 038393 82 QTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEEL 161 (618)
Q Consensus 82 ~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l 161 (618)
+.+++++|.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|+|++..+..|
T Consensus 15 ~~l~~~~n~l~---------------~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 77 (174)
T 2r9u_A 15 TLVNCQNIRLA---------------SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77 (174)
T ss_dssp SEEECCSSCCS---------------SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cEEEeCCCCCC---------------ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh
Confidence 78999999985 4455443 789999999999998889999999999999999999997666678
Q ss_pred CCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccC
Q 038393 162 GNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTI 205 (618)
Q Consensus 162 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 205 (618)
..+++|++|+|++|.+++..+..|..+++|++|++++|.+....
T Consensus 78 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 99999999999999999776667999999999999999987543
No 148
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.35 E-value=8.2e-13 Score=130.51 Aligned_cols=84 Identities=24% Similarity=0.242 Sum_probs=74.4
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE- 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~- 600 (618)
.|.....+|+|+||.||+|... +|+.||||+++.......+.+.+|+.+|++++|||||+++++|.+++..|||||||
T Consensus 75 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~ 154 (346)
T 4fih_A 75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 154 (346)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCT
T ss_pred hcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCC
Confidence 3666677999999999999964 79999999998665555677999999999999999999999999999999999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 155 gg~L~~ 160 (346)
T 4fih_A 155 GGALTD 160 (346)
T ss_dssp TEEHHH
T ss_pred CCcHHH
Confidence 778865
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=4.6e-10 Score=114.86 Aligned_cols=320 Identities=12% Similarity=0.112 Sum_probs=173.8
Q ss_pred cCCccccCCC-CCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCcc---ccccCCccccCCCCCcE
Q 038393 70 TIPSELGNLS-SLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLND---FSGTIPKEIGNVTKLIG 145 (618)
Q Consensus 70 ~~~~~~~~l~-~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~ 145 (618)
+...+|.+.. .|+.+.+..+ + +..-..+|.++++|+.+.+..|. ++.+...+|.++.+|+.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-v--------------t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~ 118 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-V--------------TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTD 118 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-C--------------CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCB
T ss_pred cCHhhccCCCCcCEEEEECCC-e--------------eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhccccee
Confidence 4445666664 4777776543 2 12234567788888888887653 55555667777777877
Q ss_pred EEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCc
Q 038393 146 LYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLS 225 (618)
Q Consensus 146 L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 225 (618)
+.+..+ ++.....+|..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ +............|+.+.+..+-.
T Consensus 119 i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~- 194 (394)
T 4gt6_A 119 IPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT- 194 (394)
T ss_dssp CGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-
T ss_pred eccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-
Confidence 766544 44355566777888888888654 33345556777778888777654 332222222335677777655432
Q ss_pred ccCCccCCCCCCCcEEeccCccCcccCchhhhhc-------------CCCCcEEEccCCcccccCCccCCCCCCCcEEEe
Q 038393 226 GSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNN-------------FPFLEELYLSKNMFYGEIPSDLANCSYLRILVL 292 (618)
Q Consensus 226 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 292 (618)
......+..+.+++......+... .+...++.. ...+..+.+.. .++......|.++..|+.+.+
T Consensus 195 ~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 195 RIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp EECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEEC
T ss_pred ccccchhhhccccceecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEec
Confidence 234455666667776665554332 111111110 11223333321 223333445666677777766
Q ss_pred ecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccc
Q 038393 293 QFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNIS 372 (618)
Q Consensus 293 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 372 (618)
..+.. .....+|.+++.|+.+.+. +.++.++. ..|.+|.+|+.+++..+ ++.+.
T Consensus 273 p~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~-~aF~~c~~L~~i~lp~~-v~~I~---------------------- 326 (394)
T 4gt6_A 273 PDSVV-SIGTGAFMNCPALQDIEFS-SRITELPE-SVFAGCISLKSIDIPEG-ITQIL---------------------- 326 (394)
T ss_dssp CTTCC-EECTTTTTTCTTCCEEECC-TTCCEECT-TTTTTCTTCCEEECCTT-CCEEC----------------------
T ss_pred ccccc-eecCcccccccccccccCC-CcccccCc-eeecCCCCcCEEEeCCc-ccEeh----------------------
Confidence 54433 2444556666667766664 34555543 45666666666666543 33222
Q ss_pred cCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcc
Q 038393 373 GGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNML 443 (618)
Q Consensus 373 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 443 (618)
...|.++.+|+.+.+..+ ++.....+|.++++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 327 ---~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 327 ---DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ---TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred ---HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 245666667777777543 444445667777777777777665331 3455566677776665543
No 150
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=131.63 Aligned_cols=84 Identities=24% Similarity=0.242 Sum_probs=74.7
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE- 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~- 600 (618)
.|.....+|+|+||.||+|... .|+.||||+++.......+.+.+|+.+|++++|||||+++++|.+++..|||||||
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~ 231 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 231 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred hcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCC
Confidence 4667778999999999999964 79999999998665555677999999999999999999999999999999999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 232 gG~L~~ 237 (423)
T 4fie_A 232 GGALTD 237 (423)
T ss_dssp TEEHHH
T ss_pred CCcHHH
Confidence 778865
No 151
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.31 E-value=2e-12 Score=127.94 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=67.4
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
+.|.....+|+|+||.||+|+. .+|+.||||++.... ....+.|.+|+.++++++|||||++++++.+++..|||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 3466677899999999999985 479999999997442 2335679999999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|| +|+|.+
T Consensus 104 y~~gg~L~~ 112 (350)
T 4b9d_A 104 YCEGGDLFK 112 (350)
T ss_dssp CCTTCBHHH
T ss_pred CCCCCcHHH
Confidence 98 789876
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=3.6e-10 Score=115.72 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=47.9
Q ss_pred ccCCCCC-CCCEEeccCccccccCCccccCCCCCcEEEeeccc---cccccCcccCCCCCCCEEecccCcCcccCCcccc
Q 038393 111 STLSNCK-RLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQ---LQGEIPEELGNLAELEELWLQNNFLTGTIPSSIF 186 (618)
Q Consensus 111 ~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~---i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 186 (618)
.+|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++.+...+|..+.+|+.+.+..+ ++.....+|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4455553 4777776543 555556667777777777766553 44344455666666666655443 3333444455
Q ss_pred CCCCCCEEEee
Q 038393 187 NLSSLSILDLS 197 (618)
Q Consensus 187 ~l~~L~~L~l~ 197 (618)
.+.+|+.+.+.
T Consensus 135 ~c~~L~~i~lp 145 (394)
T 4gt6_A 135 HCEELDTVTIP 145 (394)
T ss_dssp TCTTCCEEECC
T ss_pred hhccccccccc
Confidence 55555555554
No 153
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.29 E-value=2.1e-12 Score=125.57 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=73.8
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
.+|.....+|+|+||.||+|+. .+|+.+|||.+.... ....+.+.+|++++++++|||||++++++.+++..||||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 3577778999999999999985 479999999997432 233467999999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||| +|+|.+
T Consensus 112 Ey~~gG~L~~ 121 (311)
T 4aw0_A 112 SYAKNGELLK 121 (311)
T ss_dssp CCCTTEEHHH
T ss_pred ecCCCCCHHH
Confidence 998 778876
No 154
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.7e-13 Score=138.49 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=19.1
Q ss_pred CCCCcEEEccCCcccccCCccCC-----CCCCCcEEEeeccccc
Q 038393 260 FPFLEELYLSKNMFYGEIPSDLA-----NCSYLRILVLQFNNFS 298 (618)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~ 298 (618)
++.|++|+|++|.++......+. ..++|++|++++|.++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~ 114 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD 114 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC
Confidence 35566666666666533222211 1245555555555544
No 155
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.29 E-value=2.5e-12 Score=125.37 Aligned_cols=80 Identities=28% Similarity=0.445 Sum_probs=66.1
Q ss_pred cccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-
Q 038393 524 FSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE- 600 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~- 600 (618)
+.....+|+|+||.||+|.+.+ .||||.++... ....+.|.+|+.++++++|||||+++|+|.+ +..+||||||
T Consensus 38 l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~ 114 (307)
T 3omv_A 38 VMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQWCE 114 (307)
T ss_dssp CCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEECCS
T ss_pred eEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEEcCC
Confidence 3445579999999999999753 58999986432 3345679999999999999999999999865 5689999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 115 gGsL~~ 120 (307)
T 3omv_A 115 GSSLYK 120 (307)
T ss_dssp SCBHHH
T ss_pred CCCHHH
Confidence 889876
No 156
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.28 E-value=2.8e-12 Score=122.87 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=69.0
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
+.|.....+|+|+||.||+|.. .+|+.||||.++... ....+.|.+|+.++++++|||||++++++.+++..||||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 3567777899999999999995 479999999996432 223456999999999999999999999999999999999
Q ss_pred ecCCCCcce
Q 038393 598 LKEDQSLTQ 606 (618)
Q Consensus 598 e~~~g~l~~ 606 (618)
|||+|+|.+
T Consensus 93 Ey~~g~L~~ 101 (275)
T 3hyh_A 93 EYAGNELFD 101 (275)
T ss_dssp ECCCEEHHH
T ss_pred eCCCCCHHH
Confidence 999888765
No 157
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=3.6e-12 Score=123.29 Aligned_cols=80 Identities=25% Similarity=0.305 Sum_probs=66.8
Q ss_pred ccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeec----CCeeeEeeec
Q 038393 527 NNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSN----DDFKALPLLK 599 (618)
Q Consensus 527 ~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~----~~~~~lv~e~ 599 (618)
...+|+|+||.||+|... .+..||+|.+.... ....+.|.+|++++++++|||||+++++|.+ ++..+|||||
T Consensus 31 ~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy 110 (290)
T 3fpq_A 31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTEL 110 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEEC
T ss_pred eeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeC
Confidence 346999999999999965 68999999996442 2334679999999999999999999999865 3457999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
| +|+|.+
T Consensus 111 ~~gg~L~~ 118 (290)
T 3fpq_A 111 MTSGTLKT 118 (290)
T ss_dssp CCSCBHHH
T ss_pred CCCCCHHH
Confidence 8 789876
No 158
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.26 E-value=2.2e-12 Score=127.00 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=69.6
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
.+|.....+|+|+||.||+|... .|+.||||.++.. ..+.+|+.++++++|||||+++++|.+++..|||||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~-----~~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE-----VFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-----TCCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHH-----HhHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEecc
Confidence 45666678999999999999954 7999999999743 23457999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 133 ~gg~L~~ 139 (336)
T 4g3f_A 133 EGGSLGQ 139 (336)
T ss_dssp TTCBHHH
T ss_pred CCCcHHH
Confidence 789876
No 159
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.25 E-value=5.8e-12 Score=123.56 Aligned_cols=81 Identities=26% Similarity=0.317 Sum_probs=65.1
Q ss_pred cccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCC----eeeEeeec
Q 038393 524 FSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD----FKALPLLK 599 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~----~~~lv~e~ 599 (618)
+.....+|+|+||.||+|.+ .|+.||||+++.... ....++.|+..+.+++|||||+++|+|.+++ ..+|||||
T Consensus 5 i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey 82 (303)
T 3hmm_A 5 IVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDY 82 (303)
T ss_dssp EEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEEC
T ss_pred EEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecC
Confidence 34456799999999999998 589999999975422 1233556777778999999999999998754 57999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
| +|+|.+
T Consensus 83 ~~~gsL~~ 90 (303)
T 3hmm_A 83 HEHGSLFD 90 (303)
T ss_dssp CTTCBHHH
T ss_pred CCCCcHHH
Confidence 8 889876
No 160
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.24 E-value=5.9e-12 Score=122.87 Aligned_cols=84 Identities=19% Similarity=0.385 Sum_probs=68.2
Q ss_pred ccccccccccCCcceeEEEEe-cCCceEEEEEeecccc-cchhhHHHHHHHhhcccCCccceEeeeeecCC---------
Q 038393 523 EFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK-EAFKSFDIECDMMKRIRHRNLIKIISSCSNDD--------- 591 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~-~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~--------- 591 (618)
+|.....+|+|+||.||+|.. .+|+.||||++..... ...+.|.+|+.+|++++|||||+++++|.+.+
T Consensus 6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~ 85 (299)
T 4g31_A 6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSS 85 (299)
T ss_dssp HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC---------
T ss_pred hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccC
Confidence 466777899999999999985 4799999999975433 23467999999999999999999999987544
Q ss_pred ---eeeEeeecC-CCCcce
Q 038393 592 ---FKALPLLKE-DQSLTQ 606 (618)
Q Consensus 592 ---~~~lv~e~~-~g~l~~ 606 (618)
..||||||| +|+|.+
T Consensus 86 ~~~~l~ivmE~~~gg~L~~ 104 (299)
T 4g31_A 86 PKVYLYIQMQLCRKENLKD 104 (299)
T ss_dssp -CEEEEEEEECCCSCCHHH
T ss_pred CCcEEEEEEecCCCCcHHH
Confidence 369999998 788875
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=1.9e-12 Score=130.84 Aligned_cols=87 Identities=21% Similarity=0.150 Sum_probs=42.0
Q ss_pred cccceeeeCCcccccc----cCccccccCCCceEEccccccccCC----chhhhcCCCCCeEEcCCCcceeccc----hh
Q 038393 383 TNLIAIYLGGNKLNGT----IPITLGKLQKLQLLSFEDNQLEGSI----PNDLCRLAALFQLDLGGNMLSGFIP----AC 450 (618)
Q Consensus 383 ~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~ 450 (618)
++|+.|+|++|.+++. ++..+...++|++|+|++|.+++.. +..+...++|+.|+|++|.+++... ..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4555555555555432 2222344555555555555554321 2334444555555555555554322 22
Q ss_pred hhcccCCCceecCCCCCcC
Q 038393 451 FGNLTYLKKLNLGSNQLTS 469 (618)
Q Consensus 451 ~~~l~~L~~L~l~~n~l~~ 469 (618)
+...++|+.|++++|.++.
T Consensus 235 L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHCSSCCEEECTTSSCCH
T ss_pred HHhCCCCCEEeccCCCCCH
Confidence 3334555555555555543
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.7e-11 Score=120.90 Aligned_cols=99 Identities=21% Similarity=0.186 Sum_probs=76.2
Q ss_pred CCC-CCcccCCccccCCCCCCEEeCCC-CCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCC
Q 038393 63 SGL-NLTGTIPSELGNLSSLQTLDLSF-NWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNV 140 (618)
Q Consensus 63 ~~~-~l~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 140 (618)
+++ ++++ +|+ +..+++|++|+|++ |.+. +..+..|.++++|++|+|++|++++..|..|.++
T Consensus 16 ~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~--------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 79 (347)
T 2ifg_A 16 TRDGALDS-LHH-LPGAENLTELYIENQQHLQ--------------HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79 (347)
T ss_dssp CSSCCCTT-TTT-SCSCSCCSEEECCSCSSCC--------------EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred CCCCCCCc-cCC-CCCCCCeeEEEccCCCCCC--------------CcChhHhccccCCCEEECCCCccceeCHHHhcCC
Confidence 444 6764 676 88899999999986 8874 3344668888888888888888888888888888
Q ss_pred CCCcEEEeeccccccccCcccCCCCCCCEEecccCcCc
Q 038393 141 TKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLT 178 (618)
Q Consensus 141 ~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~ 178 (618)
++|++|+|++|+|++..+..|..++ |+.|+|.+|.+.
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888888888888865555555555 888888888776
No 163
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.20 E-value=4.7e-12 Score=123.11 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=66.7
Q ss_pred cccccccccccCCcceeEEEEec----CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeE
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ----DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~----~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~l 595 (618)
.+|.....+|+|+||.||+|+.. .++.||||.++... ......|.+|++++++++|||||++++++.+++..||
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 35777789999999999999742 46889999996432 2234568999999999999999999999999999999
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||| +|+|.+
T Consensus 104 vmEy~~gg~L~~ 115 (304)
T 3ubd_A 104 ILDFLRGGDLFT 115 (304)
T ss_dssp EECCCTTCEEHH
T ss_pred EEEcCCCCCHHH
Confidence 99998 789876
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=5.4e-11 Score=119.71 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=58.3
Q ss_pred cCCccCCCCCCCCEEeccC-ccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCcccc
Q 038393 108 KIPSTLSNCKRLRNISLSL-NDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIF 186 (618)
Q Consensus 108 ~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 186 (618)
.+|. +..+++|++|+|++ |.+++..+..|+++++|+.|+|++|+|++..|..|.++++|++|+|++|.+++..+..+.
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 3555 66666677777764 666666556666667777777777766666666666666666666666666644444444
Q ss_pred CCCCCCEEEeecccCc
Q 038393 187 NLSSLSILDLSVNNLT 202 (618)
Q Consensus 187 ~l~~L~~L~l~~n~l~ 202 (618)
.++ |+.|++.+|.+.
T Consensus 102 ~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCC-CCEEECCSSCCC
T ss_pred cCC-ceEEEeeCCCcc
Confidence 443 666666665554
No 165
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.14 E-value=5.5e-11 Score=118.23 Aligned_cols=93 Identities=29% Similarity=0.470 Sum_probs=83.2
Q ss_pred hhhhhhcccccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCee
Q 038393 514 FSELFQATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK 593 (618)
Q Consensus 514 l~~l~~at~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~ 593 (618)
+.++..++..|.....+|.|+||.||+|...+|..||||++........+.|.+|+.++++++||||++++++|..++..
T Consensus 31 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 110 (321)
T 2qkw_B 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEM 110 (321)
T ss_dssp CSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCC
T ss_pred HHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeE
Confidence 35666788899999999999999999999888999999998766555567899999999999999999999999999999
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
++||||+ +|+|.+
T Consensus 111 ~lv~e~~~~~~L~~ 124 (321)
T 2qkw_B 111 ILIYKYMENGNLKR 124 (321)
T ss_dssp EEEEECCTTCBTGG
T ss_pred EEEEEcCCCCcHHH
Confidence 9999998 778876
No 166
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.11 E-value=5.1e-11 Score=118.79 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=68.4
Q ss_pred ccccccccccCCcceeEEEEecC------CceEEEEEeecccc-cchhhHHHHHHHhhcccC-CccceEeeeeecC-Cee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQD------GTEVAVKVFNLQYK-EAFKSFDIECDMMKRIRH-RNLIKIISSCSND-DFK 593 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~------g~~vavK~l~~~~~-~~~~~f~~e~~~l~~l~h-~nlv~l~~~~~~~-~~~ 593 (618)
.|.....+|+|+||.||+|.... ++.||||.+..... ...+.|.+|+++|++++| ||||+++|+|.++ +..
T Consensus 65 ~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~~~~ 144 (353)
T 4ase_A 65 RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPL 144 (353)
T ss_dssp GEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTSCC
T ss_pred HeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecCCEE
Confidence 45666789999999999998542 36799999975433 335679999999999965 8999999999875 568
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
+|||||| +|+|.+
T Consensus 145 ~iV~Ey~~~G~L~~ 158 (353)
T 4ase_A 145 MVIVEFCKFGNLST 158 (353)
T ss_dssp EEEEECCTTEEHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 9999998 889876
No 167
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.09 E-value=7.3e-11 Score=119.83 Aligned_cols=84 Identities=26% Similarity=0.287 Sum_probs=69.8
Q ss_pred ccccccccccCCcceeEEEEe-cCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecC------Cee
Q 038393 523 EFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSND------DFK 593 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~------~~~ 593 (618)
.|.....+|+|+||.||+|.. ..|+.||||++.... ....+.+.+|+.+|++++|||||++++++... +..
T Consensus 55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~~ 134 (398)
T 4b99_A 55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSV 134 (398)
T ss_dssp SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCCE
T ss_pred CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCEE
Confidence 467777899999999999985 479999999996432 22346688999999999999999999987643 568
Q ss_pred eEeeecCCCCcce
Q 038393 594 ALPLLKEDQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~~g~l~~ 606 (618)
|||||||.|+|.+
T Consensus 135 ~ivmE~~~g~L~~ 147 (398)
T 4b99_A 135 YVVLDLMESDLHQ 147 (398)
T ss_dssp EEEEECCSEEHHH
T ss_pred EEEEeCCCCCHHH
Confidence 9999999887765
No 168
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.02 E-value=2.7e-10 Score=121.58 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=74.1
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
+.|.....+|+|+||.||+|... .|+.+|+|.+........+.+.+|+.+|++++|||||++++++.+++..+||||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~ 236 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence 35677778999999999999864 79999999997654445567899999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 237 ~gg~L~~ 243 (573)
T 3uto_A 237 SGGELFE 243 (573)
T ss_dssp CCCBHHH
T ss_pred CCCcHHH
Confidence 778854
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=7.5e-08 Score=97.88 Aligned_cols=306 Identities=10% Similarity=0.073 Sum_probs=149.9
Q ss_pred CCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccccccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCC
Q 038393 113 LSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLS 192 (618)
Q Consensus 113 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 192 (618)
+....+|+.+.+.. .++.+...+|.++.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.....+|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 44556778777764 366566677888888888888654 554555667765 6777776543 44333334443 4677
Q ss_pred EEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccCCCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCc
Q 038393 193 ILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFKFKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNM 272 (618)
Q Consensus 193 ~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 272 (618)
.+.+..+-.. .......-.+++...+..+ ++......+.....++.+.+..+........... . ..+
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~--~--------~~~- 183 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL--Y--------NKN- 183 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE--E--------ETT-
T ss_pred cccCCCcccc-ccccccccceeeeeeccce-eeccccchhcccccccccccccccceeeccccee--c--------ccc-
Confidence 7777544221 2222212224444444332 2223334455555666555544332211000000 0 000
Q ss_pred ccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCCEEEcCCCCCccCccccccCCCCCCCEEEcccccCccccch
Q 038393 273 FYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLEKLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPR 352 (618)
Q Consensus 273 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~ 352 (618)
......+..+..+..+.+..... ......+..+..|+.+.+..+ +..+.. ..+..+..|+.+.+..+ ++.+..
T Consensus 184 --~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~-~~f~~~~~L~~i~lp~~-v~~I~~- 256 (379)
T 4h09_A 184 --KTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGD-GAFYGMKALDEIAIPKN-VTSIGS- 256 (379)
T ss_dssp --SSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECT-TTTTTCSSCCEEEECTT-CCEECT-
T ss_pred --cceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEcc-ccccCCccceEEEcCCC-ccEeCc-
Confidence 00111222333344433332211 122334444555555555433 222222 33445555555555433 222222
Q ss_pred hhhhccccccEEEeeecccccCCchhhhcccccceeeeCCcccccccCccccccCCCceEEccccccccCCchhhhcCCC
Q 038393 353 AIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAA 432 (618)
Q Consensus 353 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 432 (618)
..+.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++.+...+|.++.+
T Consensus 257 ------------------------~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 257 ------------------------FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp ------------------------TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ------------------------cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 23444555555555432 33334445566666666666666665555566666666
Q ss_pred CCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCC
Q 038393 433 LFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTST 470 (618)
Q Consensus 433 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 470 (618)
|+.+++..+ ++.+...+|.+|.+|+.+.+..+ ++.+
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 666666543 55455566667777776666543 4433
No 170
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.00 E-value=4.1e-10 Score=111.77 Aligned_cols=83 Identities=24% Similarity=0.269 Sum_probs=73.2
Q ss_pred cccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-C
Q 038393 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-D 601 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~ 601 (618)
|.....+|.|+||.||+|... +|+.||||.+........+.|.+|+.++++++||||++++++|..++..++||||+ +
T Consensus 47 ~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 126 (321)
T 2c30_A 47 LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQG 126 (321)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred hhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEecCCC
Confidence 555568999999999999976 79999999998665555677999999999999999999999999999999999998 7
Q ss_pred CCcce
Q 038393 602 QSLTQ 606 (618)
Q Consensus 602 g~l~~ 606 (618)
|+|.+
T Consensus 127 ~~L~~ 131 (321)
T 2c30_A 127 GALTD 131 (321)
T ss_dssp CBHHH
T ss_pred CCHHH
Confidence 77765
No 171
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=98.99 E-value=3.4e-10 Score=112.72 Aligned_cols=94 Identities=34% Similarity=0.539 Sum_probs=81.1
Q ss_pred hhhhhhhcccccccccccccCCcceeEEEEecCCceEEEEEeeccccc-chhhHHHHHHHhhcccCCccceEeeeeecCC
Q 038393 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKE-AFKSFDIECDMMKRIRHRNLIKIISSCSNDD 591 (618)
Q Consensus 513 ~l~~l~~at~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~-~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~ 591 (618)
.+.++..++..|.....+|.|+||.||+|...+|+.||||++...... ....|.+|++++++++||||++++++|..++
T Consensus 21 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 100 (326)
T 3uim_A 21 SLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT 100 (326)
T ss_dssp CTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEECCSS
T ss_pred cHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEecCC
Confidence 457888888999999999999999999999888999999999754322 3446999999999999999999999999999
Q ss_pred eeeEeeecC-CCCcce
Q 038393 592 FKALPLLKE-DQSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~-~g~l~~ 606 (618)
..++||||+ +|+|.+
T Consensus 101 ~~~lv~e~~~~~~L~~ 116 (326)
T 3uim_A 101 ERLLVYPYMANGSVAS 116 (326)
T ss_dssp CCEEEEECCTTCBHHH
T ss_pred ceEEEEEeccCCCHHH
Confidence 999999998 778765
No 172
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.98 E-value=1.3e-07 Score=96.11 Aligned_cols=317 Identities=10% Similarity=0.075 Sum_probs=168.3
Q ss_pred ccccCCCCCCEEeCCCCCCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCccccccCCccccCCCCCcEEEeeccc
Q 038393 73 SELGNLSSLQTLDLSFNWFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQ 152 (618)
Q Consensus 73 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 152 (618)
+++....+|+.+.+... + +..-..+|.++.+|+.++|..+ ++.+...+|.+. +|+.+.+..+
T Consensus 40 ~~~~~~~~i~~v~ip~~-v--------------t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~- 101 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG-I--------------TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER- 101 (379)
T ss_dssp TTGGGGGGCSEEEECTT-E--------------EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-
T ss_pred cccccccCCEEEEeCCC-c--------------cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-
Confidence 34556677888776532 2 2233457899999999999754 666667788887 6888887654
Q ss_pred cccccCcccCCCCCCCEEecccCcCcccCCccccCCCCCCEEEeecccCcccCCCCCCCCCccEEEcccCcCcccCCccC
Q 038393 153 LQGEIPEELGNLAELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNLTGTIPYAGNLFQLQWLDLSDNQLSGSFPSFK 232 (618)
Q Consensus 153 i~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 232 (618)
+......+|.. .+|+.+.+..+. +.....+|.+ .+|+.+.+..+--.-....+.....++...+..+..........
T Consensus 102 l~~I~~~aF~~-~~L~~i~lp~~~-~~i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~ 178 (379)
T 4h09_A 102 VKKFGDYVFQG-TDLDDFEFPGAT-TEIGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV 178 (379)
T ss_dssp CCEECTTTTTT-CCCSEEECCTTC-CEECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE
T ss_pred eeEeccceecc-CCcccccCCCcc-cccccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccce
Confidence 55444556665 489999998753 3233444544 36777666543221112223566777777766543321110000
Q ss_pred CCCCCCcEEeccCccCcccCchhhhhcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCccccCCCCCC
Q 038393 233 FKMPRLQVLDLSVNGLSGELPANFCNNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIGNLTKLE 312 (618)
Q Consensus 233 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 312 (618)
. ..... .....+. ....+..+.+.... .......+..+.+|+.+.+..+ +.......|..+..|+
T Consensus 179 -~--------~~~~~---~~~~~~~-~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~ 243 (379)
T 4h09_A 179 -L--------YNKNK---TILESYP-AAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALD 243 (379)
T ss_dssp -E--------EETTS---SEEEECC-TTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCC
T ss_pred -e--------ccccc---ceecccc-ccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccce
Confidence 0 00000 0000110 12233333332221 1123334455555665555433 2223344555666666
Q ss_pred EEEcCCCCCccCccccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhcccccceeeeCC
Q 038393 313 KLDLQFNRLRELSFLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLTNLIAIYLGG 392 (618)
Q Consensus 313 ~L~L~~n~l~~~~~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 392 (618)
.+.+..+ ++.+.. ..+.++.+|+.+.+..+ ++.+.. ..|.++++|+.+.+.+
T Consensus 244 ~i~lp~~-v~~I~~-~aF~~~~~l~~i~l~~~-i~~i~~-------------------------~aF~~c~~L~~i~l~~ 295 (379)
T 4h09_A 244 EIAIPKN-VTSIGS-FLLQNCTALKTLNFYAK-VKTVPY-------------------------LLCSGCSNLTKVVMDN 295 (379)
T ss_dssp EEEECTT-CCEECT-TTTTTCTTCCEEEECCC-CSEECT-------------------------TTTTTCTTCCEEEECC
T ss_pred EEEcCCC-ccEeCc-cccceeehhcccccccc-ceeccc-------------------------cccccccccccccccc
Confidence 6666543 444433 44556666666665432 221111 2345556666666666
Q ss_pred cccccccCccccccCCCceEEccccccccCCchhhhcCCCCCeEEcCCCcceeccchhhhccc
Q 038393 393 NKLNGTIPITLGKLQKLQLLSFEDNQLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLT 455 (618)
Q Consensus 393 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 455 (618)
+.+.......|.++.+|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.
T Consensus 296 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 296 SAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 5555555556666666666666543 44445566777777777776544 5545556666654
No 173
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=1.1e-09 Score=109.48 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=30.1
Q ss_pred hcCCCCcEEEccCCcccccCCccCCCCCCCcEEEeecccccccCCcccc--CCCCCCEEEcC
Q 038393 258 NNFPFLEELYLSKNMFYGEIPSDLANCSYLRILVLQFNNFSGAIPKEIG--NLTKLEKLDLQ 317 (618)
Q Consensus 258 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~ 317 (618)
..+|+|+.|++++|.-. ..+. +. +++|++|++..|.+.......+. .+|+|+.|+|+
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 34677777777766211 1222 22 56677777766665433322332 45566666553
No 174
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=98.94 E-value=1.1e-09 Score=107.92 Aligned_cols=95 Identities=34% Similarity=0.485 Sum_probs=81.4
Q ss_pred cchhhhhhhcccccccc------cccccCCcceeEEEEecCCceEEEEEeeccc----ccchhhHHHHHHHhhcccCCcc
Q 038393 511 MNNFSELFQATNEFSAN------NLIGRGGIGSVYKARIQDGTEVAVKVFNLQY----KEAFKSFDIECDMMKRIRHRNL 580 (618)
Q Consensus 511 ~n~l~~l~~at~~~~~~------~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~----~~~~~~f~~e~~~l~~l~h~nl 580 (618)
...+.++..+|.+|+.. ..+|.|+||.||+|.. ++..+|||.+.... ....+.|.+|+.++++++||||
T Consensus 14 ~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 92 (307)
T 2nru_A 14 SFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL 92 (307)
T ss_dssp ECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTB
T ss_pred cccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCe
Confidence 34667888999999887 7899999999999987 68899999986432 2234679999999999999999
Q ss_pred ceEeeeeecCCeeeEeeecC-CCCcce
Q 038393 581 IKIISSCSNDDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 581 v~l~~~~~~~~~~~lv~e~~-~g~l~~ 606 (618)
+++++++..++..++||||+ +|+|.+
T Consensus 93 ~~~~~~~~~~~~~~lv~e~~~~~~L~~ 119 (307)
T 2nru_A 93 VELLGFSSDGDDLCLVYVYMPNGSLLD 119 (307)
T ss_dssp CCEEEEECSSSSCEEEEECCTTCBHHH
T ss_pred EEEEEEEecCCceEEEEEecCCCcHHH
Confidence 99999999999999999998 778765
No 175
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=98.94 E-value=1.1e-09 Score=108.14 Aligned_cols=85 Identities=19% Similarity=0.264 Sum_probs=74.4
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||++... +|..+|+|.+........+.|.+|++++.+++||||++++++|.+++..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 35666778999999999999965 68999999986555556678999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 90 ~~~~L~~ 96 (310)
T 3s95_A 90 KGGTLRG 96 (310)
T ss_dssp TTCBHHH
T ss_pred CCCcHHH
Confidence 778865
No 176
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=98.94 E-value=1.3e-09 Score=106.83 Aligned_cols=85 Identities=26% Similarity=0.299 Sum_probs=75.5
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||+|.. .+|+.||||.+........+.+.+|+.++.+++|||||+++++|..++..++||||+
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 99 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL 99 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEECC
Confidence 4577778999999999999985 578999999998665555677999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 100 ~~~~L~~ 106 (297)
T 3fxz_A 100 AGGSLTD 106 (297)
T ss_dssp TTCBHHH
T ss_pred CCCCHHH
Confidence 888865
No 177
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=98.92 E-value=1.3e-09 Score=112.55 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=79.1
Q ss_pred hhhhhhcccccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeec
Q 038393 514 FSELFQATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589 (618)
Q Consensus 514 l~~l~~at~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~ 589 (618)
+.++..++.+|.....+|+|+||.||+|... .|+.+|+|++.... ....+.+.+|+.++.+++|||||+++++|.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 3455567788999999999999999999976 58899999997432 2234459999999999999999999999999
Q ss_pred CCeeeEeeecC-CCCcce
Q 038393 590 DDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 590 ~~~~~lv~e~~-~g~l~~ 606 (618)
++..++||||| +|+|.+
T Consensus 146 ~~~~~lV~Ey~~gg~L~~ 163 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLT 163 (437)
T ss_dssp SSEEEEEECCCTTCBHHH
T ss_pred CCEEEEEEecCCCCcHHH
Confidence 99999999998 888865
No 178
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=98.91 E-value=1.1e-09 Score=111.96 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=79.5
Q ss_pred hhhhhhhcccccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeee
Q 038393 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCS 588 (618)
Q Consensus 513 ~l~~l~~at~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~ 588 (618)
.+.++......|.....+|.|+||.||++... .|+.+|+|++.... ....+.+.+|+.+++.++|||||+++++|.
T Consensus 60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~ 139 (410)
T 3v8s_A 60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQ 139 (410)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred HHHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEE
Confidence 34555667788999999999999999999965 68999999996432 233456899999999999999999999999
Q ss_pred cCCeeeEeeecC-CCCcce
Q 038393 589 NDDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 589 ~~~~~~lv~e~~-~g~l~~ 606 (618)
+++..++||||| +|+|.+
T Consensus 140 ~~~~~~lV~E~~~gg~L~~ 158 (410)
T 3v8s_A 140 DDRYLYMVMEYMPGGDLVN 158 (410)
T ss_dssp CSSEEEEEECCCTTEEHHH
T ss_pred ECCEEEEEEeCCCCCcHHH
Confidence 999999999998 778765
No 179
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=98.90 E-value=1.7e-09 Score=109.69 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=66.5
Q ss_pred ccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-CC
Q 038393 525 SANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-DQ 602 (618)
Q Consensus 525 ~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~g 602 (618)
.....+|.|+||.||+|... +|..||+|.+........+.|.+|+.++.+++|||||+++++|..++..++||||+ +|
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 33457999999999999864 78999999997655455678999999999999999999999999999999999998 67
Q ss_pred Ccce
Q 038393 603 SLTQ 606 (618)
Q Consensus 603 ~l~~ 606 (618)
+|.+
T Consensus 172 ~L~~ 175 (373)
T 2x4f_A 172 ELFD 175 (373)
T ss_dssp EEHH
T ss_pred cHHH
Confidence 8754
No 180
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=98.90 E-value=1.1e-09 Score=111.12 Aligned_cols=85 Identities=21% Similarity=0.375 Sum_probs=72.2
Q ss_pred cccccccccccCCcceeEEEEec----CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ----DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~----~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
..|.....+|.|+||.||+|... .+..||||.+.... ....+.|.+|+.++++++|||||+++++|..++..++|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 124 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV 124 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence 35777789999999999999864 56789999997542 23356799999999999999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 125 ~e~~~~~sL~~ 135 (373)
T 2qol_A 125 TEYMENGSLDS 135 (373)
T ss_dssp EECCTTCBHHH
T ss_pred EeCCCCCcHHH
Confidence 9998 788876
No 181
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=98.90 E-value=1.4e-09 Score=115.69 Aligned_cols=86 Identities=22% Similarity=0.242 Sum_probs=69.6
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHH---HHHHhhcccCCccceEeeeeecCCee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDI---ECDMMKRIRHRNLIKIISSCSNDDFK 593 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~---e~~~l~~l~h~nlv~l~~~~~~~~~~ 593 (618)
.++|....++|.|+||.||+|+.. .|+.+|||+++... ......+.+ ++.+++.++|||||++++++.+++..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 356888889999999999999964 79999999996432 122222333 46677888999999999999999999
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
||||||| +|+|..
T Consensus 268 ylVmEy~~GGdL~~ 281 (689)
T 3v5w_A 268 SFILDLMNGGDLHY 281 (689)
T ss_dssp EEEECCCCSCBHHH
T ss_pred EEEEecCCCCcHHH
Confidence 9999998 788865
No 182
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=98.88 E-value=1.7e-09 Score=107.47 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=74.3
Q ss_pred cccccccccccccCCcceeEEEEe-cCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 520 ATNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 520 at~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
...+|.....+|.|+||.||+|.. ..|+.||||.+.... ....+.+.+|+.++++++||||+++++++..++..++|
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 345677788999999999999996 589999999996542 23345688999999999999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||| +|+|.+
T Consensus 93 ~e~~~~~~L~~ 103 (328)
T 3fe3_A 93 MEYASGGEVFD 103 (328)
T ss_dssp ECCCTTCBHHH
T ss_pred EECCCCCcHHH
Confidence 9998 778765
No 183
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=3.5e-10 Score=113.11 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=18.8
Q ss_pred CcEEEEEcCCCCCcc-c-------CCccccCCCCCCEEeCCCC
Q 038393 55 HRVTALNISGLNLTG-T-------IPSELGNLSSLQTLDLSFN 89 (618)
Q Consensus 55 ~~v~~L~L~~~~l~~-~-------~~~~~~~l~~L~~L~Ls~n 89 (618)
.+|+.|.+......+ . +.+++.++++|+.|.+...
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDI 149 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCc
Confidence 356667666554432 1 1223445667777766554
No 184
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=98.87 E-value=2.7e-09 Score=103.01 Aligned_cols=83 Identities=20% Similarity=0.257 Sum_probs=72.2
Q ss_pred ccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-C
Q 038393 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-D 601 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~ 601 (618)
.|.....+|.|+||.||+|...++..+|+|.+.... ...+.|.+|++++.+++||||++++++|.+++..++||||+ +
T Consensus 11 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 89 (269)
T 4hcu_A 11 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEH 89 (269)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred hceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCCC
Confidence 456667899999999999998888899999997543 23467999999999999999999999999999999999998 6
Q ss_pred CCcce
Q 038393 602 QSLTQ 606 (618)
Q Consensus 602 g~l~~ 606 (618)
|+|.+
T Consensus 90 ~~L~~ 94 (269)
T 4hcu_A 90 GCLSD 94 (269)
T ss_dssp CBHHH
T ss_pred CcHHH
Confidence 77765
No 185
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=98.87 E-value=2e-09 Score=107.66 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=73.1
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
...|.....+|.|+||.||+|.. ..|+.||||.+.... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~E 88 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLE 88 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEEe
Confidence 45677778999999999999985 579999999986543 2334678999999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 89 ~~~gg~L~~ 97 (347)
T 3zgw_A 89 YCPGGELFD 97 (347)
T ss_dssp CCTTCBHHH
T ss_pred CCCCCCHHH
Confidence 98 788865
No 186
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=98.86 E-value=2.5e-09 Score=107.24 Aligned_cols=86 Identities=20% Similarity=0.240 Sum_probs=71.6
Q ss_pred hcccccccccccccCCcceeEEEEec----CCceEEEEEeecccccchhhHHHHHHHhhcc-cCCccceEeeeeecCCee
Q 038393 519 QATNEFSANNLIGRGGIGSVYKARIQ----DGTEVAVKVFNLQYKEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFK 593 (618)
Q Consensus 519 ~at~~~~~~~~~g~g~~g~vy~~~~~----~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~ 593 (618)
+..+.|.....+|+|+||.||+|... .++.||+|.+... .....+.+|++++.++ .|||||++++++.+++..
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 34456888889999999999999742 4678999998643 2345688999999998 699999999999999999
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
+|||||| +|+|.+
T Consensus 96 ~lvmE~~~g~~L~~ 109 (361)
T 4f9c_A 96 VIAMPYLEHESFLD 109 (361)
T ss_dssp EEEEECCCCCCHHH
T ss_pred EEEEeCCCcccHHH
Confidence 9999998 678765
No 187
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=98.86 E-value=2.1e-09 Score=106.08 Aligned_cols=85 Identities=22% Similarity=0.348 Sum_probs=71.7
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccc--cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYK--EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
+.|.....+|.|+||.||+|...+|+.+|+|++..... ...+.+.+|+.++++++|||||++++++..++..++||||
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 100 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFEF 100 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEEC
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEcC
Confidence 45777788999999999999988899999999864422 2245688999999999999999999999999999999999
Q ss_pred CCCCcce
Q 038393 600 EDQSLTQ 606 (618)
Q Consensus 600 ~~g~l~~ 606 (618)
+.|++.+
T Consensus 101 ~~~~l~~ 107 (311)
T 3niz_A 101 MEKDLKK 107 (311)
T ss_dssp CSEEHHH
T ss_pred CCCCHHH
Confidence 9877654
No 188
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=98.86 E-value=3.3e-09 Score=105.02 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=61.5
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc-cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~-~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
..|.....+|.|+||.||+|... +|+.||+|.+..... ...+.+.+|++++++++|||||++++++..++..++||||
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 84 (317)
T 2pmi_A 5 SQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEF 84 (317)
T ss_dssp --------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEEC
T ss_pred cceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEEe
Confidence 45677778999999999999864 789999999975432 2346789999999999999999999999999999999999
Q ss_pred CCCCcce
Q 038393 600 EDQSLTQ 606 (618)
Q Consensus 600 ~~g~l~~ 606 (618)
+.|+|.+
T Consensus 85 ~~~~L~~ 91 (317)
T 2pmi_A 85 MDNDLKK 91 (317)
T ss_dssp CCCBHHH
T ss_pred cCCCHHH
Confidence 9888754
No 189
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=98.85 E-value=2.4e-09 Score=106.40 Aligned_cols=84 Identities=21% Similarity=0.370 Sum_probs=71.0
Q ss_pred ccccccccccCCcceeEEEEec----CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ----DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~----~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
.|.....+|.|+||.||+|... .+..||||.+.... ....+.|.+|+.++++++||||++++++|.+++..++||
T Consensus 50 ~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 129 (325)
T 3kul_A 50 RIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVT 129 (325)
T ss_dssp GEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEEE
T ss_pred HeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEEe
Confidence 4666678999999999999964 34569999997542 334567999999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 130 e~~~~~~L~~ 139 (325)
T 3kul_A 130 EYMENGSLDT 139 (325)
T ss_dssp ECCTTCBHHH
T ss_pred eCCCCCcHHH
Confidence 998 778865
No 190
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=98.85 E-value=3.2e-09 Score=108.64 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=79.0
Q ss_pred hhhhhhcccccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeec
Q 038393 514 FSELFQATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589 (618)
Q Consensus 514 l~~l~~at~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~ 589 (618)
++++.....+|.....+|+|+||.||++... +|+.+|||++.... ....+.+.+|..++.+++|||||+++++|.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 3455556778999999999999999999975 79999999996432 2334568999999999999999999999999
Q ss_pred CCeeeEeeecC-CCCcce
Q 038393 590 DDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 590 ~~~~~lv~e~~-~g~l~~ 606 (618)
++..++||||| +|+|.+
T Consensus 133 ~~~~~lVmE~~~gg~L~~ 150 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLT 150 (412)
T ss_dssp SSEEEEEECCCCSCBHHH
T ss_pred CCEEEEEEcCCCCCcHHH
Confidence 99999999998 788865
No 191
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=98.85 E-value=3.7e-09 Score=106.39 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=72.7
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccccc------chhhHHHHHHHhhcccCCccceEeeeeecCCeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKE------AFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 594 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~------~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~ 594 (618)
..|.....+|.|+||.||++... +|..+|+|.+...... ..+.+.+|+.++.+++|||||+++++|.+++..+
T Consensus 12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 91 (361)
T 2yab_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV 91 (361)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence 34677778999999999999965 7899999999754321 2356899999999999999999999999999999
Q ss_pred EeeecC-CCCcce
Q 038393 595 LPLLKE-DQSLTQ 606 (618)
Q Consensus 595 lv~e~~-~g~l~~ 606 (618)
+||||+ +|+|.+
T Consensus 92 lv~e~~~gg~L~~ 104 (361)
T 2yab_A 92 LILELVSGGELFD 104 (361)
T ss_dssp EEEECCCSCBHHH
T ss_pred EEEEcCCCCcHHH
Confidence 999998 788865
No 192
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=98.85 E-value=2.8e-09 Score=107.03 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=75.9
Q ss_pred hhhcccccccccccccCCcceeEEEEec-CCceEEEEEeeccc-----ccchhhHHHHHHHhhcccCCccceEeeeeecC
Q 038393 517 LFQATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-----KEAFKSFDIECDMMKRIRHRNLIKIISSCSND 590 (618)
Q Consensus 517 l~~at~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-----~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~ 590 (618)
+......|.....+|.|+||.||+|... ++..+|+|.+.... ....+.|.+|+.++++++|||||+++++|.++
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 3344556888889999999999999864 78899999986432 23356799999999999999999999999999
Q ss_pred CeeeEeeecC-CCCcce
Q 038393 591 DFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 591 ~~~~lv~e~~-~g~l~~ 606 (618)
+..++||||+ +|+|.+
T Consensus 101 ~~~~lv~e~~~gg~L~~ 117 (345)
T 3hko_A 101 QYICLVMELCHGGHLLD 117 (345)
T ss_dssp SEEEEEEECCCSCBHHH
T ss_pred CeEEEEEeCCCCCcHHH
Confidence 9999999998 888865
No 193
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=98.84 E-value=2.1e-09 Score=109.28 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=72.2
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
.|.....+|.|+||.||+|... +++.||||.+.... ....+.|.+|+.++++++|||||+++|+|..++..++|||||
T Consensus 115 ~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 194 (377)
T 3cbl_A 115 DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELV 194 (377)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred HeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEEcC
Confidence 4566678999999999999976 78999999987442 233467999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 195 ~~g~L~~ 201 (377)
T 3cbl_A 195 QGGDFLT 201 (377)
T ss_dssp TTCBHHH
T ss_pred CCCCHHH
Confidence 778765
No 194
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=98.83 E-value=4.7e-09 Score=104.18 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=70.8
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc-cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~-~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
..|.....+|+|+||.||+|... +++.+|||.+..... ...+.+.+|+.++.+++|||||+++++|..++..++||||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 86 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence 45677788999999999999965 789999999864432 2346799999999999999999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 87 ~~~~~L~~ 94 (323)
T 3tki_A 87 CSGGELFD 94 (323)
T ss_dssp CTTEEGGG
T ss_pred CCCCcHHH
Confidence 8 668866
No 195
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=98.82 E-value=4.5e-09 Score=106.86 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=73.8
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||+|... +|+.+|+|.+..........+.+|+.++.+++|||||+++++|..++..++||||+
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~ 130 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 130 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcC
Confidence 35677778999999999999865 78999999997554444567999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 131 ~gg~L~~ 137 (387)
T 1kob_A 131 SGGELFD 137 (387)
T ss_dssp CCCBHHH
T ss_pred CCCcHHH
Confidence 778865
No 196
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=98.82 E-value=3.2e-09 Score=111.85 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=72.9
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||+|... .+..||||.+.... ...+.|.+|+.++++++|||||+++|+|..++..+||||||
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~ 298 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM 298 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEcc
Confidence 34666778999999999999976 48899999997543 23567999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 299 ~~g~L~~ 305 (495)
T 1opk_A 299 TYGNLLD 305 (495)
T ss_dssp TTCBHHH
T ss_pred CCCCHHH
Confidence 688865
No 197
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=98.82 E-value=4.6e-09 Score=104.70 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=72.7
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
++|.....+|.|+||.||++... +|+.+|+|.+.... ....+.+.+|+.++.+++||||+++++++...+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 45777789999999999999965 78999999997532 233456889999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|..
T Consensus 85 E~~~gg~L~~ 94 (337)
T 1o6l_A 85 EYANGGELFF 94 (337)
T ss_dssp ECCTTCBHHH
T ss_pred eCCCCCcHHH
Confidence 998 678754
No 198
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=98.82 E-value=4.5e-09 Score=102.57 Aligned_cols=84 Identities=25% Similarity=0.316 Sum_probs=72.6
Q ss_pred ccccccccccCCcceeEEEEec-CC-------ceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DG-------TEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 594 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g-------~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~ 594 (618)
.|.....+|.|+||.||+|... .+ ..+|+|.+........+.|.+|+.++++++||||++++++|..++..+
T Consensus 9 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 88 (289)
T 4fvq_A 9 DLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENI 88 (289)
T ss_dssp GEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCCE
T ss_pred HeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCCE
Confidence 4666678999999999999854 34 569999997665566678999999999999999999999999999999
Q ss_pred EeeecC-CCCcce
Q 038393 595 LPLLKE-DQSLTQ 606 (618)
Q Consensus 595 lv~e~~-~g~l~~ 606 (618)
+||||+ +|+|.+
T Consensus 89 lv~e~~~~~~L~~ 101 (289)
T 4fvq_A 89 LVQEFVKFGSLDT 101 (289)
T ss_dssp EEEECCTTCBHHH
T ss_pred EEEECCCCCCHHH
Confidence 999998 678875
No 199
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=98.82 E-value=4.8e-09 Score=104.54 Aligned_cols=70 Identities=21% Similarity=0.418 Sum_probs=57.6
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD 591 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~ 591 (618)
..|.....+|.|+||.||+|... +|+.||||++.... ....+.|.+|+.++++++|||||+++++|.+.+
T Consensus 6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 77 (332)
T 3qd2_B 6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETP 77 (332)
T ss_dssp HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECC
T ss_pred hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEec
Confidence 35667778999999999999975 79999999997543 234567999999999999999999999986543
No 200
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=98.82 E-value=5.1e-09 Score=101.49 Aligned_cols=85 Identities=24% Similarity=0.306 Sum_probs=74.2
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||+|... .+..+|+|.+........+.|.+|++++.+++||||++++++|..++..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC 88 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence 34677778999999999999965 57889999997665556678999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 89 ~~~~L~~ 95 (277)
T 3f3z_A 89 TGGELFE 95 (277)
T ss_dssp CSCBHHH
T ss_pred CCCcHHH
Confidence 668754
No 201
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=98.82 E-value=3.9e-09 Score=103.01 Aligned_cols=84 Identities=25% Similarity=0.353 Sum_probs=71.8
Q ss_pred ccccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
.|.....+|.|+||.||+|....|+.+|+|.+.... ....+.+.+|+.++++++||||+++++++..++..++||||+
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 82 (288)
T 1ob3_A 3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHL 82 (288)
T ss_dssp SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred cchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEec
Confidence 355667899999999999998789999999986443 223467889999999999999999999999999999999999
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
.|+|.+
T Consensus 83 ~~~l~~ 88 (288)
T 1ob3_A 83 DQDLKK 88 (288)
T ss_dssp SEEHHH
T ss_pred CCCHHH
Confidence 877654
No 202
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=98.82 E-value=3.5e-09 Score=103.08 Aligned_cols=84 Identities=11% Similarity=-0.003 Sum_probs=71.7
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccc---cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK---EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~---~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
.|.....+|.|+||.||+|... .|+.||||.+..... ...+.|.+|+..+.+++||||+++++++..++..++|||
T Consensus 32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 111 (286)
T 3uqc_A 32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAE 111 (286)
T ss_dssp TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEEE
Confidence 4666678999999999999975 589999999975432 223679999999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 112 ~~~g~~L~~ 120 (286)
T 3uqc_A 112 WIRGGSLQE 120 (286)
T ss_dssp CCCEEEHHH
T ss_pred ecCCCCHHH
Confidence 98 668765
No 203
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=98.82 E-value=3.3e-09 Score=106.41 Aligned_cols=85 Identities=26% Similarity=0.307 Sum_probs=72.2
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccc---cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK---EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~---~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||+|.. .+|+.||||++..... ...+.|.+|++++.+++|||||+++++|..++..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 3467777899999999999995 5799999999974422 22456899999999999999999999999999999999
Q ss_pred ecCCCCcce
Q 038393 598 LKEDQSLTQ 606 (618)
Q Consensus 598 e~~~g~l~~ 606 (618)
||+.|++.+
T Consensus 134 e~~~g~l~~ 142 (348)
T 1u5q_A 134 EYCLGSASD 142 (348)
T ss_dssp ECCSEEHHH
T ss_pred ecCCCCHHH
Confidence 999887654
No 204
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=98.81 E-value=4.9e-09 Score=101.07 Aligned_cols=84 Identities=21% Similarity=0.249 Sum_probs=72.7
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE- 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~- 600 (618)
..|.....+|.|+||.||+|...++..+|+|.+.... ...+++.+|+.++.+++||||++++++|..++..++||||+
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 86 (268)
T 3sxs_A 8 EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYIS 86 (268)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred hheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEccC
Confidence 3566667899999999999998888889999997543 23467999999999999999999999999999999999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 87 ~~~L~~ 92 (268)
T 3sxs_A 87 NGCLLN 92 (268)
T ss_dssp TCBHHH
T ss_pred CCcHHH
Confidence 777765
No 205
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=98.81 E-value=5.5e-09 Score=101.58 Aligned_cols=84 Identities=17% Similarity=0.246 Sum_probs=69.8
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE- 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~- 600 (618)
..|.....+|.|+||.||++...++..+|+|.+.... ...++|.+|++++.+++||||++++++|..++..++||||+
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 102 (283)
T 3gen_A 24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA 102 (283)
T ss_dssp GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCCT
T ss_pred HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEeccC
Confidence 3466667899999999999998888899999997543 23467999999999999999999999999999999999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 103 ~~~L~~ 108 (283)
T 3gen_A 103 NGCLLN 108 (283)
T ss_dssp TCBHHH
T ss_pred CCcHHH
Confidence 778765
No 206
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=98.81 E-value=5.2e-09 Score=105.22 Aligned_cols=84 Identities=15% Similarity=0.287 Sum_probs=71.5
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccc-----cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-----EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~-----~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
.|.....+|.|+||.||++... +|+.+|||.+..... ...+.|.+|+.++.+++|||||+++++|..++..++|
T Consensus 25 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv 104 (351)
T 3c0i_A 25 VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYMV 104 (351)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred ceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 4666778999999999999864 789999999964321 1346799999999999999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 105 ~e~~~g~~L~~ 115 (351)
T 3c0i_A 105 FEFMDGADLCF 115 (351)
T ss_dssp EECCSSCBHHH
T ss_pred EeCCCCCCHHH
Confidence 9998 678754
No 207
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=98.81 E-value=6.6e-09 Score=103.28 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=72.0
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccccc------chhhHHHHHHHhhcccCCccceEeeeeecCCeeeE
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKE------AFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~------~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~l 595 (618)
.|.....+|.|+||.||++... +|..+|+|.+...... ..+.+.+|+.++.+++|||||+++++|..++..++
T Consensus 12 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 91 (326)
T 2y0a_A 12 YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVIL 91 (326)
T ss_dssp HEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 4666778999999999999965 7899999998654321 24569999999999999999999999999999999
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 92 v~e~~~~~~L~~ 103 (326)
T 2y0a_A 92 ILELVAGGELFD 103 (326)
T ss_dssp EEECCCSCBHHH
T ss_pred EEEcCCCCCHHH
Confidence 99998 778865
No 208
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=98.81 E-value=5.1e-09 Score=109.20 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=71.8
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE- 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~- 600 (618)
..|.....+|.|+||.||+|....+..||||.+.... ...+.|.+|+.++++++|||||+++++|. .+..++|||||
T Consensus 188 ~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~ 265 (454)
T 1qcf_A 188 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFMA 265 (454)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECCCT
T ss_pred HHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEeecC
Confidence 4566677899999999999999888899999997543 34577999999999999999999999986 66789999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 266 ~g~L~~ 271 (454)
T 1qcf_A 266 KGSLLD 271 (454)
T ss_dssp TCBHHH
T ss_pred CCcHHH
Confidence 788875
No 209
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=98.81 E-value=4.7e-09 Score=103.47 Aligned_cols=84 Identities=27% Similarity=0.390 Sum_probs=71.5
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
..|.....+|.|+||.||+|.. .|+.+|||.+.... ....+.|.+|++++++++||||++++++|..++..++||||
T Consensus 37 ~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 115 (309)
T 3p86_A 37 CDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEY 115 (309)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEEC
T ss_pred hHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEec
Confidence 3466667899999999999987 58899999986443 22345799999999999999999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 116 ~~~~~L~~ 123 (309)
T 3p86_A 116 LSRGSLYR 123 (309)
T ss_dssp CTTCBHHH
T ss_pred CCCCcHHH
Confidence 8 778865
No 210
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=98.80 E-value=3.4e-09 Score=106.47 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=66.4
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
...|.....+|+|+||.||+|... .++.||||.+.... ..+.+.+|++++.+++||||++++++|..++..++||||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 129 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL 129 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence 445777789999999999999975 68899999987432 345688999999999999999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 130 ~~~~~L~~ 137 (349)
T 2w4o_A 130 VTGGELFD 137 (349)
T ss_dssp CCSCBHHH
T ss_pred CCCCCHHH
Confidence 8 778865
No 211
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=98.80 E-value=5.1e-09 Score=105.62 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=72.5
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||++... .|+.||||.+.... ...+.+.+|+.++++++|||||++++++.+++..++||||+
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~ 98 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYA 98 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEeC
Confidence 34667778999999999999965 78999999996432 23466899999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 99 ~~~~L~~ 105 (361)
T 3uc3_A 99 SGGELYE 105 (361)
T ss_dssp CSCBHHH
T ss_pred CCCCHHH
Confidence 778865
No 212
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=98.80 E-value=6.5e-09 Score=101.62 Aligned_cols=83 Identities=25% Similarity=0.322 Sum_probs=70.6
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccc--cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK--EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
.|.....+|.|+||.||+|... +|+.+|||++..... ...+.+.+|+.++.+++||||+++++++..++..++||||
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 82 (292)
T 3o0g_A 3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF 82 (292)
T ss_dssp SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEec
Confidence 4566678999999999999965 789999999974432 2246788999999999999999999999999999999999
Q ss_pred CCCCcc
Q 038393 600 EDQSLT 605 (618)
Q Consensus 600 ~~g~l~ 605 (618)
+.|++.
T Consensus 83 ~~~~l~ 88 (292)
T 3o0g_A 83 CDQDLK 88 (292)
T ss_dssp CSEEHH
T ss_pred CCCCHH
Confidence 977654
No 213
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=98.80 E-value=4.6e-09 Score=106.33 Aligned_cols=85 Identities=24% Similarity=0.419 Sum_probs=70.9
Q ss_pred cccccccccccCCcceeEEEEec--------CCceEEEEEeeccc-ccchhhHHHHHHHhhcc-cCCccceEeeeeecCC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ--------DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDD 591 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~--------~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~ 591 (618)
..|.....+|+|+||.||+|... .+..||||.+.... ....+.|.+|++++.++ +|||||+++++|..++
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 160 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG 160 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence 35666778999999999999852 34679999996542 23346799999999999 8999999999999999
Q ss_pred eeeEeeecC-CCCcce
Q 038393 592 FKALPLLKE-DQSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~-~g~l~~ 606 (618)
..++||||+ +|+|.+
T Consensus 161 ~~~lv~e~~~~g~L~~ 176 (370)
T 2psq_A 161 PLYVIVEYASKGNLRE 176 (370)
T ss_dssp SCEEEEECCTTCBHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 999999998 778865
No 214
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=98.79 E-value=6.6e-09 Score=102.74 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=72.4
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
.+|.....+|.|+||.||++... +|+.+|+|.+.... ....+.+.+|+.++++++|||||++++++.+++..++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 45677778999999999999965 79999999997542 223456889999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 86 e~~~gg~L~~ 95 (318)
T 1fot_A 86 DYIEGGELFS 95 (318)
T ss_dssp CCCCSCBHHH
T ss_pred eCCCCCCHHH
Confidence 998 678865
No 215
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=98.79 E-value=5.1e-09 Score=105.63 Aligned_cols=85 Identities=19% Similarity=0.410 Sum_probs=72.7
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
..|.....+|.|+||.||++... +|..+|+|.+.... ....+.+.+|+.++.+++|||||+++++|.+++..++|||
T Consensus 29 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e 108 (362)
T 2bdw_A 29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD 108 (362)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 45777788999999999999864 78999999997542 2234568999999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 109 ~~~gg~L~~ 117 (362)
T 2bdw_A 109 LVTGGELFE 117 (362)
T ss_dssp CCCSCBHHH
T ss_pred cCCCCCHHH
Confidence 98 678754
No 216
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=98.79 E-value=4.8e-09 Score=102.63 Aligned_cols=84 Identities=24% Similarity=0.387 Sum_probs=71.5
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
.|.....+|.|+||.||++... .+..+|+|.+.... ....+.|.+|+.++.+++||||+++++++..++..++|||
T Consensus 12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 91 (294)
T 4eqm_A 12 RYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVME 91 (294)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEEE
T ss_pred cEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEEe
Confidence 4666778999999999999854 78999999985432 2234679999999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 92 ~~~g~~L~~ 100 (294)
T 4eqm_A 92 YIEGPTLSE 100 (294)
T ss_dssp CCCSCBHHH
T ss_pred CCCCCCHHH
Confidence 98 668875
No 217
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=98.78 E-value=7e-09 Score=101.52 Aligned_cols=83 Identities=20% Similarity=0.353 Sum_probs=69.8
Q ss_pred cccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-C
Q 038393 524 FSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-D 601 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~ 601 (618)
+....++|.|+||.||+|.. .+++.||||.+........+.|.+|+.++.+++||||++++++|...+..++||||+ +
T Consensus 24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 103 (295)
T 2clq_A 24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPG 103 (295)
T ss_dssp TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCSE
T ss_pred CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCCC
Confidence 33445899999999999995 478999999997655555677999999999999999999999999999999999998 6
Q ss_pred CCcce
Q 038393 602 QSLTQ 606 (618)
Q Consensus 602 g~l~~ 606 (618)
|+|.+
T Consensus 104 ~~L~~ 108 (295)
T 2clq_A 104 GSLSA 108 (295)
T ss_dssp EEHHH
T ss_pred CCHHH
Confidence 77765
No 218
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=98.78 E-value=1.1e-08 Score=100.32 Aligned_cols=85 Identities=21% Similarity=0.340 Sum_probs=67.0
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc--------------------------cchhhHHHHHHHhhc
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK--------------------------EAFKSFDIECDMMKR 574 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~--------------------------~~~~~f~~e~~~l~~ 574 (618)
+.|.....+|.|+||.||+|... +|+.||||.+..... ...+.|.+|++++++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 92 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK 92 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence 45667778999999999999864 789999999864321 113568999999999
Q ss_pred ccCCccceEeeeeec--CCeeeEeeecC-CCCcce
Q 038393 575 IRHRNLIKIISSCSN--DDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 575 l~h~nlv~l~~~~~~--~~~~~lv~e~~-~g~l~~ 606 (618)
++||||+++++++.. ++..++||||+ +|+|.+
T Consensus 93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~ 127 (298)
T 2zv2_A 93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVME 127 (298)
T ss_dssp CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCC
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHH
Confidence 999999999999986 56789999998 677765
No 219
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=98.78 E-value=6e-09 Score=104.46 Aligned_cols=89 Identities=24% Similarity=0.310 Sum_probs=74.4
Q ss_pred hhcccccccccccccCCcceeEEEEec------CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecC
Q 038393 518 FQATNEFSANNLIGRGGIGSVYKARIQ------DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSND 590 (618)
Q Consensus 518 ~~at~~~~~~~~~g~g~~g~vy~~~~~------~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~ 590 (618)
.-....|.....+|.|+||.||+|... .++.||||.+.... ....+.|.+|+.++.+++||||++++++|..+
T Consensus 43 ~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~ 122 (343)
T 1luf_A 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVG 122 (343)
T ss_dssp BCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS
T ss_pred EecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccC
Confidence 334556777788999999999999974 34889999997543 23356799999999999999999999999999
Q ss_pred CeeeEeeecC-CCCcce
Q 038393 591 DFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 591 ~~~~lv~e~~-~g~l~~ 606 (618)
+..++||||+ +|+|.+
T Consensus 123 ~~~~lv~e~~~~~~L~~ 139 (343)
T 1luf_A 123 KPMCLLFEYMAYGDLNE 139 (343)
T ss_dssp SSCEEEEECCTTCBHHH
T ss_pred CceEEEEecCCCCcHHH
Confidence 9999999998 778876
No 220
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=98.78 E-value=8.2e-09 Score=103.69 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=73.2
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccch-----------------hhHHHHHHHhhcccCCccceEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAF-----------------KSFDIECDMMKRIRHRNLIKII 584 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~-----------------~~f~~e~~~l~~l~h~nlv~l~ 584 (618)
..|.....+|.|+||.||+|.. +|..||||.+........ +.|.+|+.++.+++||||++++
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 109 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE 109 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence 4577778899999999999999 899999999975432211 7799999999999999999999
Q ss_pred eeeecCCeeeEeeecC-CCCcce
Q 038393 585 SSCSNDDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 585 ~~~~~~~~~~lv~e~~-~g~l~~ 606 (618)
++|..++..++||||+ +|+|.+
T Consensus 110 ~~~~~~~~~~lv~e~~~~~~L~~ 132 (348)
T 2pml_X 110 GIITNYDEVYIIYEYMENDSILK 132 (348)
T ss_dssp EEEESSSEEEEEEECCTTCBSSE
T ss_pred EEEeeCCeEEEEEeccCCCcHHH
Confidence 9999999999999998 668877
No 221
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=98.77 E-value=6.3e-09 Score=103.61 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=72.7
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||+|.. ..|+.||+|.+.... ....+.+.+|+.++++++||||++++++|..++..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 4567777899999999999995 578999999996432 223457999999999999999999999999999999999
Q ss_pred ecCCCCcce
Q 038393 598 LKEDQSLTQ 606 (618)
Q Consensus 598 e~~~g~l~~ 606 (618)
||++|++.+
T Consensus 89 E~~~g~l~~ 97 (336)
T 3h4j_B 89 EYAGGELFD 97 (336)
T ss_dssp CCCCEEHHH
T ss_pred ECCCCcHHH
Confidence 999887754
No 222
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=98.77 E-value=7.8e-09 Score=107.63 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=70.4
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCC-eeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD-FKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~-~~~lv~e~~ 600 (618)
..|.....+|.|+||.||+|... |+.||||.+.... ..+.|.+|+.++++++|||||+++++|...+ ..++|||||
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~ 269 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 269 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECC
T ss_pred HHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEec
Confidence 34666678999999999999985 7899999997542 4567999999999999999999999998765 789999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 270 ~~g~L~~ 276 (450)
T 1k9a_A 270 AKGSLVD 276 (450)
T ss_dssp TTCBHHH
T ss_pred CCCcHHH
Confidence 778875
No 223
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=98.77 E-value=4.8e-09 Score=101.22 Aligned_cols=83 Identities=20% Similarity=0.386 Sum_probs=70.6
Q ss_pred ccccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecC--CeeeEeee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSND--DFKALPLL 598 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~--~~~~lv~e 598 (618)
.|.....+|.|+||.||+|... |..+|||.+.... ....+.|.+|+.++++++||||++++++|..+ +..++|||
T Consensus 11 ~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e 89 (271)
T 3kmu_A 11 QLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITH 89 (271)
T ss_dssp GCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEE
T ss_pred HhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeec
Confidence 4566678999999999999984 8889999997542 23356799999999999999999999999887 77899999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 90 ~~~~~~L~~ 98 (271)
T 3kmu_A 90 WMPYGSLYN 98 (271)
T ss_dssp CCTTCBHHH
T ss_pred ccCCCcHHH
Confidence 98 678876
No 224
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=98.77 E-value=4.6e-09 Score=104.46 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=66.4
Q ss_pred cccccccccccCCcceeEEEEe----cCCceEEEEEeeccc----ccchhhHHHHHHHhhcccCCccceEeeeeecCCee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI----QDGTEVAVKVFNLQY----KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~----~~g~~vavK~l~~~~----~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~ 593 (618)
..|.....+|.|+||.||++.. ..|+.+|+|.+.... ......+.+|+.++.+++|||||++++++..++..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 96 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL 96 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence 4577778899999999999986 478999999986432 22345688999999999999999999999999999
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
++||||+ +|+|.+
T Consensus 97 ~lv~e~~~~~~L~~ 110 (327)
T 3a62_A 97 YLILEYLSGGELFM 110 (327)
T ss_dssp EEEEECCTTEEHHH
T ss_pred EEEEeCCCCCcHHH
Confidence 9999998 677754
No 225
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=98.77 E-value=4.2e-09 Score=103.14 Aligned_cols=84 Identities=26% Similarity=0.388 Sum_probs=70.6
Q ss_pred ccccccccccCCcceeEEEEe-----cCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecC--CeeeE
Q 038393 523 EFSANNLIGRGGIGSVYKARI-----QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSND--DFKAL 595 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~-----~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~--~~~~l 595 (618)
.|.....+|.|+||.||++.+ ..|+.||||++........+.|.+|+.++.+++||||++++++|... ...++
T Consensus 11 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 90 (295)
T 3ugc_A 11 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKL 90 (295)
T ss_dssp GEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCEE
T ss_pred HhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceEE
Confidence 455667899999999999984 36889999999765555567899999999999999999999999754 45899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 91 v~e~~~~~~L~~ 102 (295)
T 3ugc_A 91 IMEYLPYGSLRD 102 (295)
T ss_dssp EEECCTTCBHHH
T ss_pred EEEeCCCCCHHH
Confidence 99998 778875
No 226
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=98.76 E-value=7.5e-09 Score=105.71 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=76.5
Q ss_pred hhhhcccccccccccccC--CcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecC
Q 038393 516 ELFQATNEFSANNLIGRG--GIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSND 590 (618)
Q Consensus 516 ~l~~at~~~~~~~~~g~g--~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~ 590 (618)
.+......|.....+|.| +||.||++... +|+.||||++.... ....+.+.+|+.++++++|||||+++++|..+
T Consensus 19 ~~~~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~ 98 (389)
T 3gni_B 19 SFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD 98 (389)
T ss_dssp CCCCCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET
T ss_pred cccCCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEEC
Confidence 334445667888899999 99999999965 79999999997543 22346688999999999999999999999999
Q ss_pred CeeeEeeecC-CCCcce
Q 038393 591 DFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 591 ~~~~lv~e~~-~g~l~~ 606 (618)
+..++||||| +|+|.+
T Consensus 99 ~~~~lv~e~~~~~~L~~ 115 (389)
T 3gni_B 99 NELWVVTSFMAYGSAKD 115 (389)
T ss_dssp TEEEEEEECCTTCBHHH
T ss_pred CEEEEEEEccCCCCHHH
Confidence 9999999998 778765
No 227
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=98.76 E-value=7.9e-09 Score=104.70 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=72.2
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||++... .|+.+|+|.+.... ....+.+.+|+.++.+++|||||+++++|.+++..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 34666778999999999999965 68999999996432 233467889999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 95 e~~~gg~L~~ 104 (384)
T 4fr4_A 95 DLLLGGDLRY 104 (384)
T ss_dssp CCCTTEEHHH
T ss_pred ecCCCCcHHH
Confidence 998 778764
No 228
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=98.76 E-value=7.9e-09 Score=101.52 Aligned_cols=85 Identities=19% Similarity=0.335 Sum_probs=70.6
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||+|... +|..+|+|.+........+.|.+|+.++.+++||||++++++|..++..++||||+
T Consensus 19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 98 (302)
T 2j7t_A 19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEFC 98 (302)
T ss_dssp GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEECC
T ss_pred cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEeC
Confidence 45667778999999999999975 68999999997665555678999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 99 ~~~~l~~ 105 (302)
T 2j7t_A 99 PGGAVDA 105 (302)
T ss_dssp TTEEHHH
T ss_pred CCCcHHH
Confidence 667654
No 229
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=98.76 E-value=6.7e-09 Score=108.20 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=70.9
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE- 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~- 600 (618)
..|.....+|.|+||.||+|....+..||||.+.... ...+.|.+|+.++++++|||||+++++|.. +..++|||||
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~ 261 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMS 261 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCT
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehhhc
Confidence 3456667899999999999999877889999997543 235679999999999999999999999976 7789999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 262 ~gsL~~ 267 (452)
T 1fmk_A 262 KGSLLD 267 (452)
T ss_dssp TCBHHH
T ss_pred CCCHHH
Confidence 778876
No 230
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=98.76 E-value=8.7e-09 Score=99.20 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=72.3
Q ss_pred ccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-C
Q 038393 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-D 601 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~ 601 (618)
.|.....+|.|+||.||++...++..+|+|.+..... ..+.+.+|++++.+++||||++++++|..++..++||||+ +
T Consensus 9 ~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 87 (267)
T 3t9t_A 9 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEH 87 (267)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCTT
T ss_pred heeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCCC
Confidence 4566678999999999999988888999999975432 3467999999999999999999999999999999999998 6
Q ss_pred CCcce
Q 038393 602 QSLTQ 606 (618)
Q Consensus 602 g~l~~ 606 (618)
|+|.+
T Consensus 88 ~~L~~ 92 (267)
T 3t9t_A 88 GCLSD 92 (267)
T ss_dssp CBHHH
T ss_pred CcHHH
Confidence 78865
No 231
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=98.76 E-value=8.3e-09 Score=102.28 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=72.0
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||++... +|..+|+|.+.... ...+.+.+|+.++.+++||||++++++|.+.+..++||||+
T Consensus 5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~ 83 (321)
T 1tki_A 5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEFI 83 (321)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEeC
Confidence 45667778999999999999965 68999999986432 23456889999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 84 ~g~~L~~ 90 (321)
T 1tki_A 84 SGLDIFE 90 (321)
T ss_dssp CCCBHHH
T ss_pred CCCCHHH
Confidence 668765
No 232
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=98.76 E-value=1.1e-08 Score=101.25 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=68.8
Q ss_pred cccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEeeecC-CCCc
Q 038393 528 NLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPLLKE-DQSL 604 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~e~~-~g~l 604 (618)
..+|+|+||.||+|.. .+|+.||||.+........+.+.+|++++.++ +||||+++++++..++..++||||+ +|+|
T Consensus 19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L 98 (316)
T 2ac3_A 19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRGGSI 98 (316)
T ss_dssp CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCTTCBH
T ss_pred ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCCCcH
Confidence 5789999999999995 47999999999765444566799999999985 7999999999999999999999998 6787
Q ss_pred ce
Q 038393 605 TQ 606 (618)
Q Consensus 605 ~~ 606 (618)
.+
T Consensus 99 ~~ 100 (316)
T 2ac3_A 99 LS 100 (316)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 233
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=98.76 E-value=9.1e-09 Score=101.22 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=70.1
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE- 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~- 600 (618)
.|.....+|.|+||.||++... +|+.+|+|.+........+.+.+|+.++.+++||||++++++|..++..++||||+
T Consensus 10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 89 (304)
T 2jam_A 10 TFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVS 89 (304)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred cceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcCC
Confidence 4667778999999999999965 78999999997654444567999999999999999999999999999999999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 90 ~~~L~~ 95 (304)
T 2jam_A 90 GGELFD 95 (304)
T ss_dssp SCBHHH
T ss_pred CccHHH
Confidence 678755
No 234
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=98.75 E-value=1.2e-08 Score=99.25 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=72.1
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccc-cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~-~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
.|.....+|.|+||.||++... +|..+|+|.+..... ...+.+.+|++++++++||||++++++|.+.+..++||||+
T Consensus 23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 102 (285)
T 3is5_A 23 LFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETC 102 (285)
T ss_dssp HEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred heeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeC
Confidence 4666778999999999999864 789999999975432 23567999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 103 ~~~~L~~ 109 (285)
T 3is5_A 103 EGGELLE 109 (285)
T ss_dssp SCCBHHH
T ss_pred CCCcHHH
Confidence 668754
No 235
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=98.75 E-value=6.3e-09 Score=103.61 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=70.3
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccc--cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK--EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
..|.....+|.|+||.||+|.. .+|+.||||++..... ...+.+.+|+.++++++||||+++++++..++..++|||
T Consensus 34 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 113 (329)
T 3gbz_A 34 DRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFE 113 (329)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEEe
Confidence 4577778999999999999985 4789999999964432 224568899999999999999999999999999999999
Q ss_pred cCCCCcce
Q 038393 599 KEDQSLTQ 606 (618)
Q Consensus 599 ~~~g~l~~ 606 (618)
|+.|+|.+
T Consensus 114 ~~~~~L~~ 121 (329)
T 3gbz_A 114 YAENDLKK 121 (329)
T ss_dssp CCSEEHHH
T ss_pred cCCCCHHH
Confidence 99887765
No 236
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=98.75 E-value=6.1e-09 Score=105.29 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=76.8
Q ss_pred hhhhhhcccccccccccccCCcceeEEEEecCCceEEEEEeeccccc-----------chhhHHHHHHHhhcccCCccce
Q 038393 514 FSELFQATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKE-----------AFKSFDIECDMMKRIRHRNLIK 582 (618)
Q Consensus 514 l~~l~~at~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~-----------~~~~f~~e~~~l~~l~h~nlv~ 582 (618)
+.++......|.....+|.|+||.||+|....|..||||++...... ..+.|.+|+.++.+++||||++
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~ 93 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG 93 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence 45667778889999999999999999999888999999998543211 1267899999999999999999
Q ss_pred EeeeeecC-----CeeeEeeecCCCCcce
Q 038393 583 IISSCSND-----DFKALPLLKEDQSLTQ 606 (618)
Q Consensus 583 l~~~~~~~-----~~~~lv~e~~~g~l~~ 606 (618)
++++|... ...++||||+.|++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~lv~e~~~~~l~~ 122 (362)
T 3pg1_A 94 LRDIFVHFEEPAMHKLYLVTELMRTDLAQ 122 (362)
T ss_dssp CSEEEEECCTTTCCEEEEEEECCSEEHHH
T ss_pred eeeeEEeccCCCcceEEEEEccCCCCHHH
Confidence 99998543 3579999999887755
No 237
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=98.75 E-value=6.7e-09 Score=105.07 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=70.5
Q ss_pred ccccccccccCCcceeEEEEec------CCceEEEEEeecc-cccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeE
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ------DGTEVAVKVFNLQ-YKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~------~g~~vavK~l~~~-~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~l 595 (618)
.|.....+|.|+||.||+|... .+..||||++... .......|.+|+.++++++|||||+++++|..++..++
T Consensus 72 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 151 (367)
T 3l9p_A 72 NITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFI 151 (367)
T ss_dssp GEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCEE
Confidence 4666678999999999999842 4678999998643 23344579999999999999999999999999999999
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 152 v~e~~~~g~L~~ 163 (367)
T 3l9p_A 152 LLELMAGGDLKS 163 (367)
T ss_dssp EEECCTTEEHHH
T ss_pred EEEeCCCCCHHH
Confidence 99998 778865
No 238
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=98.75 E-value=7.8e-09 Score=102.59 Aligned_cols=83 Identities=23% Similarity=0.277 Sum_probs=68.5
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCe----eeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF----KALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~----~~lv~ 597 (618)
..|.....+|.|+||.||+|... ++.||||++.... .....+..|+.++.+++|||||+++++|..++. .++||
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~ 101 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLIT 101 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEE
Confidence 45667778999999999999875 8899999996543 224456779999999999999999999987543 69999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 102 e~~~~g~L~~ 111 (322)
T 3soc_A 102 AFHEKGSLSD 111 (322)
T ss_dssp ECCTTCBHHH
T ss_pred ecCCCCCHHH
Confidence 998 778875
No 239
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=98.74 E-value=7.6e-09 Score=107.07 Aligned_cols=85 Identities=18% Similarity=0.296 Sum_probs=70.7
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
..|.....+|.|+||.||++.. ..|+.+|+|.+.... ....+.+.+|+.++.+++|||||+++++|.+++..++|||
T Consensus 11 ~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E 90 (444)
T 3soa_A 11 EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFD 90 (444)
T ss_dssp HHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEEC
T ss_pred CCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEE
Confidence 4567778899999999999985 479999999986432 2234568999999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 91 ~~~gg~L~~ 99 (444)
T 3soa_A 91 LVTGGELFE 99 (444)
T ss_dssp CCBCCBHHH
T ss_pred eCCCCCHHH
Confidence 98 778855
No 240
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=98.74 E-value=1.3e-08 Score=100.76 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=70.8
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCC--eeeEeee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD--FKALPLL 598 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~--~~~lv~e 598 (618)
.|.....+|.|+||.||+|... .|+.||||++.... ....+.+.+|++++++++||||+++++++...+ ..++|||
T Consensus 10 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e 89 (319)
T 4euu_A 10 LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIME 89 (319)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEE
T ss_pred CEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEEe
Confidence 4667778999999999999965 68999999997543 233566889999999999999999999998765 6799999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 90 ~~~~~~L~~ 98 (319)
T 4euu_A 90 FCPCGSLYT 98 (319)
T ss_dssp CCTTCBHHH
T ss_pred CCCCCCHHH
Confidence 98 678865
No 241
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=98.74 E-value=9.2e-09 Score=103.85 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=73.3
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
..|.....+|.|+||.||++... +|..+|+|.+.... ....+.+.+|+.++.+++||||++++++|..++..++||||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 112 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 112 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence 35777788999999999999965 78999999987542 23346799999999999999999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 113 ~~~~~L~~ 120 (360)
T 3eqc_A 113 MDGGSLDQ 120 (360)
T ss_dssp CTTCBHHH
T ss_pred CCCCCHHH
Confidence 8 668875
No 242
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=98.74 E-value=1.3e-08 Score=102.12 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=73.0
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||++... +|+.+|+|.+.... ....+.+.+|+.++.+++||||+++++++.+++..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 45777788999999999999965 78999999996542 233456889999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 121 e~~~gg~L~~ 130 (350)
T 1rdq_E 121 EYVAGGEMFS 130 (350)
T ss_dssp ECCTTCBHHH
T ss_pred cCCCCCcHHH
Confidence 998 778865
No 243
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=98.74 E-value=1.1e-08 Score=102.39 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=71.5
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc---cchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK---EAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~---~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv 596 (618)
.+|.....+|+|+||.||++... .|+.+|+|.+..... ...+.+.+|..++.++ +|||||++++++.+++..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 35677778999999999999965 689999999975432 2245588899999988 899999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 89 ~e~~~gg~L~~ 99 (345)
T 3a8x_A 89 IEYVNGGDLMF 99 (345)
T ss_dssp ECCCCSCBHHH
T ss_pred EeCCCCCcHHH
Confidence 9998 778764
No 244
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=98.73 E-value=9.4e-09 Score=100.21 Aligned_cols=86 Identities=22% Similarity=0.332 Sum_probs=73.4
Q ss_pred cccccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 520 ATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 520 at~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
....|.....+|.|+||.||+|... .+..+|+|.+... ....+.|.+|+.++.+++||||++++++|..++..++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 3455777788999999999999976 5889999998643 2335679999999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 90 ~~~~~~L~~ 98 (288)
T 3kfa_A 90 FMTYGNLLD 98 (288)
T ss_dssp CCTTEEHHH
T ss_pred cCCCCcHHH
Confidence 98 578765
No 245
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=98.73 E-value=8.3e-09 Score=101.84 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=68.9
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
+.|.....+|.|+||.||+|... +|+.||||++.... ......+..|+..+.++ +|||||+++++|.+++..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 45777788999999999999975 79999999885432 22234466666666666 9999999999999999999999
Q ss_pred ecCCCCcce
Q 038393 598 LKEDQSLTQ 606 (618)
Q Consensus 598 e~~~g~l~~ 606 (618)
||++|+|.+
T Consensus 137 e~~~~~L~~ 145 (311)
T 3p1a_A 137 ELCGPSLQQ 145 (311)
T ss_dssp ECCCCBHHH
T ss_pred eccCCCHHH
Confidence 999888765
No 246
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=98.72 E-value=1.3e-08 Score=106.02 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=72.6
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc---cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK---EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~---~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||+|... +|+.||||.+..... ...+.+.+|+.++++++||||+++++++..++..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 34666778999999999999965 799999999975422 23456899999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 96 E~~~gg~L~~ 105 (476)
T 2y94_A 96 EYVSGGELFD 105 (476)
T ss_dssp ECCSSEEHHH
T ss_pred eCCCCCcHHH
Confidence 998 778765
No 247
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=98.72 E-value=1.5e-08 Score=98.02 Aligned_cols=85 Identities=19% Similarity=0.299 Sum_probs=62.9
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
+.|.....+|.|+||.||+|.. .+|+.+|+|.+.... ....+.+.+|+.++++++||||++++++|..++..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 3577778899999999999985 478999999986432 223457899999999999999999999999999999999
Q ss_pred ecCCCCcce
Q 038393 598 LKEDQSLTQ 606 (618)
Q Consensus 598 e~~~g~l~~ 606 (618)
||++|++.+
T Consensus 93 e~~~~~l~~ 101 (275)
T 2eue_A 93 EYAGNELFD 101 (275)
T ss_dssp ECCCEEHHH
T ss_pred hhcCCcHHH
Confidence 999777654
No 248
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=98.72 E-value=1.3e-08 Score=103.59 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=70.6
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv 596 (618)
.+|.....+|.|+||.||+++.. .++.+|+|++.... ....+.+..|..++.++ +|||||+++++|.+++..++|
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lV 131 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 131 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEEE
Confidence 45777789999999999999965 68899999997542 22345588999999887 899999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|..
T Consensus 132 ~E~~~gg~L~~ 142 (396)
T 4dc2_A 132 IEYVNGGDLMF 142 (396)
T ss_dssp EECCTTCBHHH
T ss_pred EEcCCCCcHHH
Confidence 9998 778754
No 249
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=98.72 E-value=8.8e-09 Score=109.60 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=70.3
Q ss_pred ccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-C
Q 038393 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-D 601 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~ 601 (618)
.|.....+|.|+||.||+|...++..||||.+.... ...+.|.+|+.+|++++|||||+++++|.+ +..+|||||| +
T Consensus 268 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~ 345 (535)
T 2h8h_A 268 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSK 345 (535)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECCCTT
T ss_pred hhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeehhcC
Confidence 455667899999999999999878889999997543 235679999999999999999999999976 6789999998 7
Q ss_pred CCcce
Q 038393 602 QSLTQ 606 (618)
Q Consensus 602 g~l~~ 606 (618)
|+|.+
T Consensus 346 gsL~~ 350 (535)
T 2h8h_A 346 GSLLD 350 (535)
T ss_dssp EEHHH
T ss_pred CcHHH
Confidence 78876
No 250
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=98.72 E-value=1.2e-08 Score=101.91 Aligned_cols=87 Identities=14% Similarity=0.246 Sum_probs=72.5
Q ss_pred cccccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeee
Q 038393 520 ATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKA 594 (618)
Q Consensus 520 at~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~ 594 (618)
....|.....+|.|+||.||+|... +|+.+|+|.+.... ....+.+..|..++.++ +|||||++++++.+++..+
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~~ 94 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLF 94 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEEE
Confidence 3456777789999999999999975 68999999997542 22345678899999887 9999999999999999999
Q ss_pred EeeecC-CCCcce
Q 038393 595 LPLLKE-DQSLTQ 606 (618)
Q Consensus 595 lv~e~~-~g~l~~ 606 (618)
+||||+ +|+|.+
T Consensus 95 lv~E~~~gg~L~~ 107 (345)
T 1xjd_A 95 FVMEYLNGGDLMY 107 (345)
T ss_dssp EEEECCTTCBHHH
T ss_pred EEEeCCCCCcHHH
Confidence 999998 778865
No 251
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=98.72 E-value=1.6e-08 Score=100.37 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=66.7
Q ss_pred cccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhccc-CCccceEeeeeecCCeeeEeeecC-CCCc
Q 038393 528 NLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR-HRNLIKIISSCSNDDFKALPLLKE-DQSL 604 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~-h~nlv~l~~~~~~~~~~~lv~e~~-~g~l 604 (618)
..+|+|+||.||++... +|+.+|||.+... ....+.+|+.++.++. |||||+++++|.+++..++||||+ +|+|
T Consensus 17 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L 93 (325)
T 3kn6_A 17 KPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGEL 93 (325)
T ss_dssp CCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred CccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcH
Confidence 57999999999999965 7899999998643 3456889999999997 999999999999999999999998 6687
Q ss_pred ce
Q 038393 605 TQ 606 (618)
Q Consensus 605 ~~ 606 (618)
.+
T Consensus 94 ~~ 95 (325)
T 3kn6_A 94 FE 95 (325)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 252
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=98.72 E-value=1.2e-08 Score=102.31 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=71.5
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv 596 (618)
.+|.....+|.|+||.||+++.. +|+.+|||.+.... ....+.+..|..++.++ +|||||++++++.+++..++|
T Consensus 23 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~lv 102 (353)
T 3txo_A 23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFFV 102 (353)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEEE
Confidence 45777789999999999999965 68999999997432 23345688899999988 799999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 103 ~E~~~gg~L~~ 113 (353)
T 3txo_A 103 MEFVNGGDLMF 113 (353)
T ss_dssp EECCCSCBHHH
T ss_pred EeCCCCCcHHH
Confidence 9998 678764
No 253
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=98.72 E-value=1.2e-08 Score=99.24 Aligned_cols=85 Identities=19% Similarity=0.410 Sum_probs=72.2
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
+.|.....+|.|+||.||+|... +|..+|+|.+.... ....+.+.+|+.++.+++||||++++++|..++..++|||
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 85 (284)
T 3kk8_A 6 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD 85 (284)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEEe
Confidence 45777788999999999999865 68999999997543 2234668899999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 86 ~~~~~~l~~ 94 (284)
T 3kk8_A 86 LVTGGELFE 94 (284)
T ss_dssp CCCSCBHHH
T ss_pred cCCCCCHHH
Confidence 98 667744
No 254
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=98.72 E-value=1.4e-08 Score=98.38 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=73.0
Q ss_pred cccccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeE
Q 038393 520 ATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 520 at~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~l 595 (618)
+..+|.....+|.|+||.||+|... ++..+|+|.+.... ....+.+.+|+.++++++||||++++++|.+.+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 4456777889999999999999865 67899999986432 2234568999999999999999999999999999999
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 87 v~e~~~~~~l~~ 98 (279)
T 3fdn_A 87 ILEYAPLGTVYR 98 (279)
T ss_dssp EECCCTTEEHHH
T ss_pred EEecCCCCcHHH
Confidence 99998 567654
No 255
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=98.71 E-value=1.2e-08 Score=100.69 Aligned_cols=85 Identities=26% Similarity=0.360 Sum_probs=71.5
Q ss_pred cccccccccccCCcceeEEEEe------cCCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI------QDGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 594 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~------~~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~ 594 (618)
..|.....+|.|+||.||++.. .++..+|||.+.... ....+.+.+|+.++++++||||++++++|..++..+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~ 102 (314)
T 2ivs_A 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLL 102 (314)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCE
T ss_pred hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCceE
Confidence 4566677899999999999985 245889999997433 233467999999999999999999999999999999
Q ss_pred EeeecC-CCCcce
Q 038393 595 LPLLKE-DQSLTQ 606 (618)
Q Consensus 595 lv~e~~-~g~l~~ 606 (618)
+||||+ +|+|.+
T Consensus 103 lv~e~~~~~~L~~ 115 (314)
T 2ivs_A 103 LIVEYAKYGSLRG 115 (314)
T ss_dssp EEEECCTTCBHHH
T ss_pred EEEeecCCCCHHH
Confidence 999998 688865
No 256
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=98.71 E-value=2.4e-08 Score=96.64 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=72.9
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc-cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~-~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
..|.....+|+|+||.||+|... +|+.+|||.+..... ...+.+.+|+.++++++||||+++++++..++..++||||
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 86 (276)
T 2yex_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (276)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEe
Confidence 45667778999999999999965 789999999975432 3346789999999999999999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 87 ~~~~~L~~ 94 (276)
T 2yex_A 87 CSGGELFD 94 (276)
T ss_dssp CTTEEGGG
T ss_pred cCCCcHHH
Confidence 8 668866
No 257
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=98.71 E-value=1.3e-08 Score=100.72 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=66.4
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeee-------------
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCS------------- 588 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~------------- 588 (618)
.|.....+|.|+||.||+|... .|+.||+|++........+.+.+|+.++++++||||+++++++.
T Consensus 12 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~ 91 (320)
T 2i6l_A 12 RYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGSL 91 (320)
T ss_dssp TEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----C
T ss_pred ceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccccc
Confidence 4666778999999999999976 58999999997665555678999999999999999999999874
Q ss_pred -cCCeeeEeeecCCCCcce
Q 038393 589 -NDDFKALPLLKEDQSLTQ 606 (618)
Q Consensus 589 -~~~~~~lv~e~~~g~l~~ 606 (618)
..+..++||||+.|+|.+
T Consensus 92 ~~~~~~~lv~e~~~~~L~~ 110 (320)
T 2i6l_A 92 TELNSVYIVQEYMETDLAN 110 (320)
T ss_dssp CSCSEEEEEEECCSEEHHH
T ss_pred cccCceeEEeeccCCCHHH
Confidence 446789999999888765
No 258
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=98.70 E-value=8.9e-09 Score=103.18 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=73.1
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhcccC--CccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRH--RNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h--~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||++...+++.+|||++.... ....+.|.+|++++.+++| |||+++++++..++..++||
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 88 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 88 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence 3467777899999999999998889999999987443 2334679999999999987 99999999999999999999
Q ss_pred ecCCCCcce
Q 038393 598 LKEDQSLTQ 606 (618)
Q Consensus 598 e~~~g~l~~ 606 (618)
||++|+|.+
T Consensus 89 e~~~~~L~~ 97 (343)
T 3dbq_A 89 ECGNIDLNS 97 (343)
T ss_dssp CCCSEEHHH
T ss_pred eCCCCCHHH
Confidence 988888765
No 259
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=98.70 E-value=2e-08 Score=99.07 Aligned_cols=85 Identities=29% Similarity=0.389 Sum_probs=70.5
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||+|.. .+|+.+|+|.+.... ....+.|.+|+.++.+++||||++++++|..++..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 3567777899999999999995 479999999987432 233567899999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 112 e~~~~~~L~~ 121 (310)
T 2wqm_A 112 ELADAGDLSR 121 (310)
T ss_dssp ECCCSCBHHH
T ss_pred ecCCCCCHHH
Confidence 998 668765
No 260
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=98.70 E-value=1.3e-08 Score=100.82 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=69.8
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeee----cCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCS----NDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~----~~~~~~lv 596 (618)
..|.....+|.|+||.||++.. .+|+.||||++........+.+.+|+.++.+++||||++++++|. .....++|
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 108 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLL 108 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEEE
Confidence 3566677899999999999996 579999999987655555677999999999999999999999997 34578999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 109 ~e~~~~~~L~~ 119 (317)
T 2buj_A 109 LPFFKRGTLWN 119 (317)
T ss_dssp EECCTTCBHHH
T ss_pred EEeCCCCcHHH
Confidence 9998 668865
No 261
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=98.70 E-value=1.8e-08 Score=97.62 Aligned_cols=86 Identities=20% Similarity=0.425 Sum_probs=72.7
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeecccc---cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK---EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~---~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
...|.....+|+|+||.||+|.. .+|+.+|||.+..... ...+.+.+|+.++.+++||||+++++++..++..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 34577778899999999999996 4799999999964421 2236789999999999999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 90 ~e~~~~~~L~~ 100 (278)
T 3cok_A 90 LEMCHNGEMNR 100 (278)
T ss_dssp EECCTTEEHHH
T ss_pred EecCCCCcHHH
Confidence 9998 667654
No 262
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=98.70 E-value=6.3e-09 Score=103.37 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=69.2
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccccc-chhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKE-AFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~-~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
.|.....+|.|+||.||+|... +|+.+|+|.+...... ....+.+|+.++++++||||++++++|..++..++||||+
T Consensus 3 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 82 (324)
T 3mtl_A 3 TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYL 82 (324)
T ss_dssp SEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEECC
T ss_pred ceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEeccc
Confidence 4566678999999999999965 7899999999654322 2345778999999999999999999999999999999999
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
.|++.+
T Consensus 83 ~~~l~~ 88 (324)
T 3mtl_A 83 DKDLKQ 88 (324)
T ss_dssp SEEHHH
T ss_pred ccCHHH
Confidence 887654
No 263
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=98.70 E-value=2.1e-08 Score=97.38 Aligned_cols=84 Identities=23% Similarity=0.307 Sum_probs=71.7
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccccc------chhhHHHHHHHhhcccCCccceEeeeeecCCeeeE
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKE------AFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~------~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~l 595 (618)
.|.....+|.|+||.||++... +|+.+|+|.+...... ..+.|.+|+.++.+++||||++++++|..++..++
T Consensus 6 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 85 (283)
T 3bhy_A 6 HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVL 85 (283)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred hhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEE
Confidence 4666778999999999999975 7899999998643211 24669999999999999999999999999999999
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 86 v~e~~~~~~L~~ 97 (283)
T 3bhy_A 86 ILELVSGGELFD 97 (283)
T ss_dssp EEECCCSCBHHH
T ss_pred EEeecCCCcHHH
Confidence 99998 678765
No 264
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=98.70 E-value=1.1e-08 Score=98.73 Aligned_cols=84 Identities=26% Similarity=0.432 Sum_probs=66.7
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccc----cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYK----EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~----~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||+|... |..+|||.+..... ...+.|.+|++++++++||||++++++|..++..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 35666778999999999999974 88999999864322 22467899999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 86 e~~~~~~L~~ 95 (271)
T 3dtc_A 86 EFARGGPLNR 95 (271)
T ss_dssp ECCTTEEHHH
T ss_pred EcCCCCCHHH
Confidence 998 677754
No 265
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=98.69 E-value=2.1e-08 Score=103.26 Aligned_cols=85 Identities=19% Similarity=0.270 Sum_probs=68.6
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeeccc--------ccchhhHHHHHHHhhcccCCccceEeeeeecCC
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--------KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD 591 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--------~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~ 591 (618)
...|.....+|+|+||.||+|... .++.+|||.+.... ......|.+|+.++++++|||||+++++|.. +
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-~ 212 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-E 212 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-S
T ss_pred hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-C
Confidence 346777788999999999999864 68999999986432 1123468999999999999999999999864 5
Q ss_pred eeeEeeecC-CCCcce
Q 038393 592 FKALPLLKE-DQSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~-~g~l~~ 606 (618)
..++||||| +|+|.+
T Consensus 213 ~~~lv~e~~~~g~L~~ 228 (419)
T 3i6u_A 213 DYYIVLELMEGGELFD 228 (419)
T ss_dssp EEEEEEECCTTCBGGG
T ss_pred ceEEEEEcCCCCcHHH
Confidence 579999998 778865
No 266
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=98.69 E-value=2.2e-08 Score=99.25 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=72.3
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccccc------chhhHHHHHHHhhcccCCccceEeeeeecCCeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKE------AFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 594 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~------~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~ 594 (618)
..|.....+|.|+||.||++... +|..+|+|.+...... ..+.|.+|+.++.+++||||++++++|..++..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 34667778999999999999965 7899999999654321 2456999999999999999999999999999999
Q ss_pred EeeecC-CCCcce
Q 038393 595 LPLLKE-DQSLTQ 606 (618)
Q Consensus 595 lv~e~~-~g~l~~ 606 (618)
+||||+ +|+|.+
T Consensus 92 lv~e~~~~~~L~~ 104 (321)
T 2a2a_A 92 LILELVSGGELFD 104 (321)
T ss_dssp EEECCCCSCBHHH
T ss_pred EEEEcCCCCcHHH
Confidence 999998 778865
No 267
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=98.69 E-value=1.1e-08 Score=102.55 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=67.9
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeeccccc-----chhhHHHHHHHhhcccCCccceEeeeeecCCeee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKE-----AFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 594 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~-----~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~ 594 (618)
...|.....+|.|+||.||+|... +|+.+|||.+...... ..+.+.+|+.++.+++||||++++++|..++..+
T Consensus 9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 88 (346)
T 1ua2_A 9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS 88 (346)
T ss_dssp ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence 456777789999999999999965 6899999998643221 1356889999999999999999999999999999
Q ss_pred EeeecCCCCcce
Q 038393 595 LPLLKEDQSLTQ 606 (618)
Q Consensus 595 lv~e~~~g~l~~ 606 (618)
+||||+.|++.+
T Consensus 89 lv~e~~~~~l~~ 100 (346)
T 1ua2_A 89 LVFDFMETDLEV 100 (346)
T ss_dssp EEEECCSEEHHH
T ss_pred EEEEcCCCCHHH
Confidence 999999877654
No 268
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.69 E-value=3.9e-10 Score=106.78 Aligned_cols=66 Identities=35% Similarity=0.505 Sum_probs=34.4
Q ss_pred CCCCCCCEEeccCccccc--cCCccccCCCCCcEEEeeccccccccCcccCCCC--CCCEEecccCcCcccC
Q 038393 114 SNCKRLRNISLSLNDFSG--TIPKEIGNVTKLIGLYLRGNQLQGEIPEELGNLA--ELEELWLQNNFLTGTI 181 (618)
Q Consensus 114 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~p~~l~~l~--~L~~L~L~~n~l~~~~ 181 (618)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 345566666666666654 3344455556666666666665533 2222222 5555555555555433
No 269
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=98.69 E-value=1.3e-08 Score=100.88 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=73.4
Q ss_pred hcccccccccccccCCcceeEEEEec------CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCC
Q 038393 519 QATNEFSANNLIGRGGIGSVYKARIQ------DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD 591 (618)
Q Consensus 519 ~at~~~~~~~~~g~g~~g~vy~~~~~------~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~ 591 (618)
-+...|.....+|.|+||.||+|... .+..+|+|.+.... ......|.+|+.++++++||||++++++|..++
T Consensus 22 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~ 101 (322)
T 1p4o_A 22 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ 101 (322)
T ss_dssp CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred chhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEEccCC
Confidence 34456777889999999999999853 36889999986432 233456999999999999999999999999999
Q ss_pred eeeEeeecC-CCCcce
Q 038393 592 FKALPLLKE-DQSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~-~g~l~~ 606 (618)
..++||||+ +|+|.+
T Consensus 102 ~~~lv~e~~~~~~L~~ 117 (322)
T 1p4o_A 102 PTLVIMELMTRGDLKS 117 (322)
T ss_dssp SCEEEEECCTTCBHHH
T ss_pred ccEEEEEeCCCCcHHH
Confidence 999999998 678876
No 270
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=98.69 E-value=2.3e-08 Score=97.78 Aligned_cols=85 Identities=14% Similarity=0.277 Sum_probs=71.7
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|+|+||.||++... .+..+|+|.+.... ....+.+.+|+.++++++||||++++++|..++..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 34667778999999999999975 68899999986442 223466899999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 95 e~~~~~~L~~ 104 (294)
T 2rku_A 95 ELCRRRSLLE 104 (294)
T ss_dssp ECCTTCBHHH
T ss_pred ecCCCCCHHH
Confidence 998 567754
No 271
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=98.69 E-value=8.8e-09 Score=107.19 Aligned_cols=85 Identities=22% Similarity=0.261 Sum_probs=64.2
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
+.|.....+|.|+||.||++.. .+|+.||||.+.... ......+.+|+.++.+++||||++++++|..++..++||
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv~ 227 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVM 227 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEEE
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEEE
Confidence 4577778999999999999985 478999999997532 233456889999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||| +|+|.+
T Consensus 228 e~~~~~~L~~ 237 (446)
T 4ejn_A 228 EYANGGELFF 237 (446)
T ss_dssp CCCSSCBHHH
T ss_pred eeCCCCcHHH
Confidence 998 778754
No 272
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=98.69 E-value=1.8e-08 Score=100.18 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=71.5
Q ss_pred cccccccccccCCcceeEEEEe-----cCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeec--CCeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-----QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN--DDFKA 594 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-----~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~--~~~~~ 594 (618)
..|.....+|.|+||.||++.. ..+..||||++........+.|.+|+.++.+++||||+++++++.. .+..+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 3466677899999999999983 3688999999976655556779999999999999999999999874 45689
Q ss_pred EeeecC-CCCcce
Q 038393 595 LPLLKE-DQSLTQ 606 (618)
Q Consensus 595 lv~e~~-~g~l~~ 606 (618)
+||||+ +|+|.+
T Consensus 103 lv~e~~~~~~L~~ 115 (327)
T 3lxl_A 103 LVMEYLPSGCLRD 115 (327)
T ss_dssp EEEECCTTCBHHH
T ss_pred EEEeecCCCCHHH
Confidence 999998 778865
No 273
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=98.69 E-value=8.3e-09 Score=104.14 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=71.6
Q ss_pred hcccccccccccccCCcceeEEEEe------cCCceEEEEEeecccc-cchhhHHHHHHHhhcc-cCCccceEeeeeecC
Q 038393 519 QATNEFSANNLIGRGGIGSVYKARI------QDGTEVAVKVFNLQYK-EAFKSFDIECDMMKRI-RHRNLIKIISSCSND 590 (618)
Q Consensus 519 ~at~~~~~~~~~g~g~~g~vy~~~~------~~g~~vavK~l~~~~~-~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~ 590 (618)
-....|.....+|.|+||.||+|.. ..++.||||++..... ...+.|.+|++++.++ +|||||+++++|...
T Consensus 19 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~~~~~~~ 98 (359)
T 3vhe_A 19 FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKP 98 (359)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST
T ss_pred ccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeeeeeeecC
Confidence 3455677788999999999999973 2458899999975432 2346799999999999 899999999999876
Q ss_pred Ce-eeEeeecC-CCCcce
Q 038393 591 DF-KALPLLKE-DQSLTQ 606 (618)
Q Consensus 591 ~~-~~lv~e~~-~g~l~~ 606 (618)
+. .++||||+ +|+|.+
T Consensus 99 ~~~~~iv~e~~~~g~L~~ 116 (359)
T 3vhe_A 99 GGPLMVIVEFCKFGNLST 116 (359)
T ss_dssp TSCCEEEEECCTTEEHHH
T ss_pred CCceEEEEEecCCCcHHH
Confidence 54 89999998 778865
No 274
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=98.68 E-value=1.8e-08 Score=98.09 Aligned_cols=86 Identities=24% Similarity=0.261 Sum_probs=73.3
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEe
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv 596 (618)
+..|.....+|.|+||.||+|... +++.+|+|.+.... ......+.+|+..+.++ +||||+++++++..++..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv 89 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ 89 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence 345777789999999999999975 79999999987432 23356788999999999 999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 90 ~e~~~~~~L~~ 100 (289)
T 1x8b_A 90 NEYCNGGSLAD 100 (289)
T ss_dssp EECCTTCBHHH
T ss_pred EEecCCCcHHH
Confidence 9998 668876
No 275
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=98.68 E-value=1.9e-08 Score=102.90 Aligned_cols=84 Identities=23% Similarity=0.351 Sum_probs=70.8
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCC--eeeEeee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD--FKALPLL 598 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~--~~~lv~e 598 (618)
.|.....+|.|+||.||+|... .|+.||||++.... ....+.+.+|++++++++|||||++++++...+ ..++|||
T Consensus 10 ~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e 89 (396)
T 4eut_A 10 LWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIME 89 (396)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEEC
T ss_pred ceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEEe
Confidence 4677778999999999999975 68999999997543 233566889999999999999999999998765 6799999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 90 ~~~~g~L~~ 98 (396)
T 4eut_A 90 FCPCGSLYT 98 (396)
T ss_dssp CCTTEEHHH
T ss_pred cCCCCCHHH
Confidence 98 678765
No 276
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=98.68 E-value=1.9e-08 Score=98.69 Aligned_cols=85 Identities=27% Similarity=0.370 Sum_probs=69.9
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
.+|.....+|.|+||.||+|... +|+.+|||.+.... ....+.+.+|+.++++++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 34666778999999999999965 78999999986443 2234678999999999999999999999999999999999
Q ss_pred cCCCCcce
Q 038393 599 KEDQSLTQ 606 (618)
Q Consensus 599 ~~~g~l~~ 606 (618)
|+.|+|.+
T Consensus 83 ~~~~~L~~ 90 (299)
T 2r3i_A 83 FLHQDLKK 90 (299)
T ss_dssp CCSEEHHH
T ss_pred cccCCHHH
Confidence 99887765
No 277
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=98.68 E-value=1.2e-08 Score=106.54 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=61.9
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecC-----Cee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSND-----DFK 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~-----~~~ 593 (618)
..|.....+|.|+||.||+|... .|+.||||++.... ....+.+.+|+.++.+++|||||+++++|... +..
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 45777789999999999999854 78999999985432 23356799999999999999999999999543 468
Q ss_pred eEeeecCCCCcce
Q 038393 594 ALPLLKEDQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~~g~l~~ 606 (618)
++||||++|+|..
T Consensus 133 ~lv~e~~~~~L~~ 145 (458)
T 3rp9_A 133 YVVLEIADSDFKK 145 (458)
T ss_dssp EEEECCCSEEHHH
T ss_pred EEEEeccccchhh
Confidence 9999999888765
No 278
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=98.68 E-value=1.2e-08 Score=101.29 Aligned_cols=91 Identities=22% Similarity=0.372 Sum_probs=66.3
Q ss_pred hhhhcccccccccccccCCcceeEEEEecC-C---ceEEEEEeecc--cccchhhHHHHHHHhhcccCCccceEeeeeec
Q 038393 516 ELFQATNEFSANNLIGRGGIGSVYKARIQD-G---TEVAVKVFNLQ--YKEAFKSFDIECDMMKRIRHRNLIKIISSCSN 589 (618)
Q Consensus 516 ~l~~at~~~~~~~~~g~g~~g~vy~~~~~~-g---~~vavK~l~~~--~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~ 589 (618)
++.-....|.....+|.|+||.||+|.... + ..||||.+... .....+.|.+|++++++++||||+++++++..
T Consensus 17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 96 (323)
T 3qup_A 17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLR 96 (323)
T ss_dssp TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEEC
T ss_pred hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeec
Confidence 333344567778899999999999999653 3 27999998643 23345679999999999999999999999988
Q ss_pred CCee------eEeeecC-CCCcce
Q 038393 590 DDFK------ALPLLKE-DQSLTQ 606 (618)
Q Consensus 590 ~~~~------~lv~e~~-~g~l~~ 606 (618)
.+.. ++||||+ +|+|.+
T Consensus 97 ~~~~~~~~~~~~v~e~~~~~~L~~ 120 (323)
T 3qup_A 97 SRAKGRLPIPMVILPFMKHGDLHA 120 (323)
T ss_dssp C-------CEEEEEECCTTCBHHH
T ss_pred cccccCCCccEEEEEeccCCcHHH
Confidence 7765 9999998 778765
No 279
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=98.68 E-value=2.9e-08 Score=104.74 Aligned_cols=84 Identities=18% Similarity=0.202 Sum_probs=67.9
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
.|.....+|.|+||.||+|... .+..+|+|.+.... ....+.+.+|+.++++++|||||+++++|..++..++||||
T Consensus 38 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 117 (494)
T 3lij_A 38 MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMEC 117 (494)
T ss_dssp HEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEec
Confidence 4666778999999999999965 78999999986443 23356799999999999999999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 118 ~~~g~L~~ 125 (494)
T 3lij_A 118 YKGGELFD 125 (494)
T ss_dssp CCSCBHHH
T ss_pred CCCCcHHH
Confidence 8 778754
No 280
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=98.68 E-value=2.9e-08 Score=96.04 Aligned_cols=85 Identities=24% Similarity=0.278 Sum_probs=72.4
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||+|... +|+.+|||.+.... ....+.+.+|+.++++++||||+++++++..++..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM 90 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence 34666778999999999999975 79999999997543 223457899999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 91 e~~~~~~L~~ 100 (276)
T 2h6d_A 91 EYVSGGELFD 100 (276)
T ss_dssp ECCCSCBHHH
T ss_pred eccCCCcHHH
Confidence 998 678865
No 281
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=98.67 E-value=2.1e-08 Score=106.26 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=73.9
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
...|.....+|.|+||.||++... +|+.+|+|.+.... ....+.+.+|+.++.+++|||||++++++.+++..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 456788889999999999999965 79999999996532 23345688999999999999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||| +|+|.+
T Consensus 263 mEy~~gg~L~~ 273 (576)
T 2acx_A 263 LTLMNGGDLKF 273 (576)
T ss_dssp ECCCCSCBHHH
T ss_pred EEcCCCCcHHH
Confidence 9998 788865
No 282
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=98.67 E-value=1.8e-08 Score=100.63 Aligned_cols=85 Identities=24% Similarity=0.441 Sum_probs=69.9
Q ss_pred cccccccccccCCcceeEEEEe--------cCCceEEEEEeeccc-ccchhhHHHHHHHhhcc-cCCccceEeeeeecCC
Q 038393 522 NEFSANNLIGRGGIGSVYKARI--------QDGTEVAVKVFNLQY-KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDD 591 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~--------~~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~ 591 (618)
..|.....+|.|+||.||+|.. .++..||||++.... ....+.+.+|++++.++ +||||++++++|..++
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 114 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG 114 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCC
Confidence 3466667899999999999985 246789999997543 23346799999999999 9999999999999999
Q ss_pred eeeEeeecC-CCCcce
Q 038393 592 FKALPLLKE-DQSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~-~g~l~~ 606 (618)
..++||||+ +|+|.+
T Consensus 115 ~~~lv~e~~~~~~L~~ 130 (334)
T 2pvf_A 115 PLYVIVEYASKGNLRE 130 (334)
T ss_dssp CCEEEEECCTTCBHHH
T ss_pred ceEEEEECCCCCcHHH
Confidence 999999998 778865
No 283
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=98.67 E-value=1.4e-08 Score=100.35 Aligned_cols=85 Identities=19% Similarity=0.276 Sum_probs=71.5
Q ss_pred cccccccccccCCcceeEEEEe------cCCceEEEEEeecccc-cchhhHHHHHHHhhcc-cCCccceEeeeeecCCee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI------QDGTEVAVKVFNLQYK-EAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFK 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~------~~g~~vavK~l~~~~~-~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~ 593 (618)
..|.....+|.|+||.||+|.. ..+..||||.+..... ...+.|.+|+.++.++ +||||++++++|..++..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~ 102 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT 102 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCc
Confidence 3466677899999999999984 2468899999975432 2346799999999999 999999999999999999
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
++||||+ +|+|.+
T Consensus 103 ~lv~e~~~~~~L~~ 116 (313)
T 1t46_A 103 LVITEYCCYGDLLN 116 (313)
T ss_dssp EEEEECCTTEEHHH
T ss_pred EEEEecCCCCCHHH
Confidence 9999998 668865
No 284
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=98.67 E-value=2.4e-08 Score=99.41 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=71.5
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
..|.....+|.|+||.||+|.. .+|+.||||.+.... ..+.+..|+.++.++ +||||+++++++..++..++||||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~ 86 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL 86 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence 4577778899999999999995 579999999986432 345699999999999 999999999999999999999999
Q ss_pred CCCCcce
Q 038393 600 EDQSLTQ 606 (618)
Q Consensus 600 ~~g~l~~ 606 (618)
++|+|.+
T Consensus 87 ~~~~L~~ 93 (330)
T 2izr_A 87 LGPSLED 93 (330)
T ss_dssp CCCBHHH
T ss_pred CCCCHHH
Confidence 9888876
No 285
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=98.67 E-value=2.1e-08 Score=106.12 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=69.2
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc-------------cchhhHHHHHHHhhcccCCccceEeeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-------------EAFKSFDIECDMMKRIRHRNLIKIISSC 587 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~-------------~~~~~f~~e~~~l~~l~h~nlv~l~~~~ 587 (618)
..|.....+|.|+||.||+|... .+..+|+|.+..... ...+.+.+|+.++++++|||||+++++|
T Consensus 36 ~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~ 115 (504)
T 3q5i_A 36 ESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDVF 115 (504)
T ss_dssp GTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred cceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEEE
Confidence 45777788999999999999965 688999999864321 2245689999999999999999999999
Q ss_pred ecCCeeeEeeecC-CCCcce
Q 038393 588 SNDDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 588 ~~~~~~~lv~e~~-~g~l~~ 606 (618)
.+++..++||||+ +|+|.+
T Consensus 116 ~~~~~~~lv~e~~~gg~L~~ 135 (504)
T 3q5i_A 116 EDKKYFYLVTEFYEGGELFE 135 (504)
T ss_dssp ECSSEEEEEEECCTTCBHHH
T ss_pred EcCCEEEEEEecCCCCcHHH
Confidence 9999999999998 778754
No 286
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=98.67 E-value=2.2e-08 Score=97.01 Aligned_cols=83 Identities=20% Similarity=0.306 Sum_probs=70.2
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE- 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~- 600 (618)
..|.....+|.|+||.||+|...++..+|||.+.... ...+.|.+|++++.+++||||+++++++. .+..++||||+
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~ 90 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEYME 90 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEECCT
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEecCC
Confidence 3466677899999999999998888899999986542 23567999999999999999999999987 45689999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 91 ~~~L~~ 96 (279)
T 1qpc_A 91 NGSLVD 96 (279)
T ss_dssp TCBHHH
T ss_pred CCCHHH
Confidence 778865
No 287
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=98.67 E-value=2.7e-08 Score=99.24 Aligned_cols=85 Identities=14% Similarity=0.277 Sum_probs=71.9
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|+|+||.||++... .+..+|+|.+.... ....+.|.+|+.++.+++||||++++++|.+.+..++||
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 120 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 120 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 45667778999999999999965 68899999986442 223466899999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 121 e~~~~~~L~~ 130 (335)
T 2owb_A 121 ELCRRRSLLE 130 (335)
T ss_dssp CCCTTCBHHH
T ss_pred ecCCCCCHHH
Confidence 998 577765
No 288
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=99.63 Aligned_cols=84 Identities=25% Similarity=0.303 Sum_probs=69.9
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccc--cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK--EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
.|.....+|.|+||.||+|... +|+.+|+|.+..... ...+.+.+|++++.+++||||++++++|..++..++||||
T Consensus 4 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 83 (311)
T 4agu_A 4 KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFEY 83 (311)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEEe
Confidence 4666678999999999999975 689999998854322 2345688999999999999999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|++.+
T Consensus 84 ~~~~~l~~ 91 (311)
T 4agu_A 84 CDHTVLHE 91 (311)
T ss_dssp CSEEHHHH
T ss_pred CCCchHHH
Confidence 8 445543
No 289
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=98.66 E-value=2.4e-08 Score=99.31 Aligned_cols=84 Identities=26% Similarity=0.390 Sum_probs=69.8
Q ss_pred ccccccccccCCcceeEEEEe-----cCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCC--eeeE
Q 038393 523 EFSANNLIGRGGIGSVYKARI-----QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD--FKAL 595 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~-----~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~--~~~l 595 (618)
.|.....+|.|+||.||++.. ..|+.||||.+........+.|.+|+.++++++||||++++++|...+ ..++
T Consensus 42 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 121 (326)
T 2w1i_A 42 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKL 121 (326)
T ss_dssp GEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCEE
T ss_pred HceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceEE
Confidence 355667899999999999984 368999999997655555677999999999999999999999987654 6899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 122 v~e~~~~~~L~~ 133 (326)
T 2w1i_A 122 IMEYLPYGSLRD 133 (326)
T ss_dssp EECCCTTCBHHH
T ss_pred EEECCCCCCHHH
Confidence 99998 678865
No 290
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=98.66 E-value=2e-08 Score=100.72 Aligned_cols=86 Identities=20% Similarity=0.307 Sum_probs=70.6
Q ss_pred ccccccccccccCCcceeEEEEe------cCCceEEEEEeeccc-ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCe
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI------QDGTEVAVKVFNLQY-KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDF 592 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~------~~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~ 592 (618)
...|.....+|.|+||.||+|.. ..+..||||.+.... ....+.+.+|+.++.++ +||||++++++|..++.
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~ 123 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP 123 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCc
Confidence 34577778999999999999985 245679999997432 23456799999999999 99999999999999999
Q ss_pred eeEeeecC-CCCcce
Q 038393 593 KALPLLKE-DQSLTQ 606 (618)
Q Consensus 593 ~~lv~e~~-~g~l~~ 606 (618)
.++||||+ +|+|.+
T Consensus 124 ~~lv~e~~~~g~L~~ 138 (344)
T 1rjb_A 124 IYLIFEYCCYGDLLN 138 (344)
T ss_dssp CEEEEECCTTCBHHH
T ss_pred cEEEEecCCCCcHHH
Confidence 99999998 778865
No 291
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=98.66 E-value=1.8e-08 Score=100.69 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=69.0
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
..|.....+|.|+||.||++... +|+.+|||.+... ...+.+|++++.++ +|||||++++++.+++..++||||
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~----~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~ 97 (342)
T 2qr7_A 22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS----KRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTEL 97 (342)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT----TCCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcc----cCChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeC
Confidence 35777788999999999999965 7899999999643 23467788888888 799999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 98 ~~gg~L~~ 105 (342)
T 2qr7_A 98 MKGGELLD 105 (342)
T ss_dssp CCSCBHHH
T ss_pred CCCCcHHH
Confidence 8 778765
No 292
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=98.66 E-value=2e-08 Score=105.71 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=72.0
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
.|.....+|.|+||.||++... +|+.+|||++.... ....+.+.+|+.++.+++|||||+++++|..++..++||||
T Consensus 23 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 102 (486)
T 3mwu_A 23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGEL 102 (486)
T ss_dssp HEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred ceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEEc
Confidence 4666778999999999999965 78999999996432 23356799999999999999999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 103 ~~~~~L~~ 110 (486)
T 3mwu_A 103 YTGGELFD 110 (486)
T ss_dssp CCSCBHHH
T ss_pred CCCCcHHH
Confidence 8 778754
No 293
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=98.66 E-value=3.2e-08 Score=96.33 Aligned_cols=83 Identities=30% Similarity=0.424 Sum_probs=67.6
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccc-------hhhHHHHHHHhhcccCCccceEeeeeecCCee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEA-------FKSFDIECDMMKRIRHRNLIKIISSCSNDDFK 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~-------~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~ 593 (618)
..|.....+|.|+||.||+|... +++.+|+|.+....... .+.|.+|+.++.+++||||+++++++.+..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-- 96 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP-- 96 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence 34666678999999999999964 78999999986433211 267899999999999999999999997655
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
++||||+ +|+|.+
T Consensus 97 ~lv~e~~~~~~L~~ 110 (287)
T 4f0f_A 97 RMVMEFVPCGDLYH 110 (287)
T ss_dssp EEEEECCTTCBHHH
T ss_pred eEEEEecCCCCHHH
Confidence 6999998 678754
No 294
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=98.65 E-value=1.7e-08 Score=102.76 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=66.6
Q ss_pred hcccccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecC-------
Q 038393 519 QATNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSND------- 590 (618)
Q Consensus 519 ~at~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~------- 590 (618)
.....|.....+|.|+||.||+|.. .+|..||||++... .+.+.+|+.++++++|||||+++++|...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~----~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQD----PRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECC----TTSCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecC----cchHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 3455678888999999999999985 57999999998643 23455799999999999999999998543
Q ss_pred -------------------------------CeeeEeeecCCCCcce
Q 038393 591 -------------------------------DFKALPLLKEDQSLTQ 606 (618)
Q Consensus 591 -------------------------------~~~~lv~e~~~g~l~~ 606 (618)
...++||||+.|+|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~ 126 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHK 126 (383)
T ss_dssp ------------------------------CCEEEEEECCCSEEHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCCccHHH
Confidence 3478999999887654
No 295
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=98.65 E-value=2e-08 Score=98.85 Aligned_cols=79 Identities=28% Similarity=0.485 Sum_probs=66.6
Q ss_pred ccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-C
Q 038393 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-D 601 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~ 601 (618)
.|.....+|+|+||.||++... ++.+|||.+... ...+.|.+|+.++++++||||++++++|. +..++||||+ +
T Consensus 9 ~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~~ 83 (307)
T 2eva_A 9 EIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAEG 83 (307)
T ss_dssp GEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCTT
T ss_pred HeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCCC
Confidence 4566678999999999999974 788999998632 33567999999999999999999999987 4488999998 7
Q ss_pred CCcce
Q 038393 602 QSLTQ 606 (618)
Q Consensus 602 g~l~~ 606 (618)
|+|.+
T Consensus 84 ~~L~~ 88 (307)
T 2eva_A 84 GSLYN 88 (307)
T ss_dssp CBHHH
T ss_pred CCHHH
Confidence 78865
No 296
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=98.65 E-value=2e-08 Score=102.18 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=70.6
Q ss_pred cccccccccccCCcceeEEEEec--------CCceEEEEEeeccc-ccchhhHHHHHHHhhcc-cCCccceEeeeeecCC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ--------DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDD 591 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~--------~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~ 591 (618)
..|.....+|+|+||.||+|... .+..||||++.... ....+.+.+|+++++++ +|||||+++++|..++
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~ 148 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG 148 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccCC
Confidence 35666678999999999999852 23679999996543 23346799999999999 9999999999999999
Q ss_pred eeeEeeecC-CCCcce
Q 038393 592 FKALPLLKE-DQSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~-~g~l~~ 606 (618)
..++||||+ +|+|.+
T Consensus 149 ~~~lv~e~~~~g~L~~ 164 (382)
T 3tt0_A 149 PLYVIVEYASKGNLRE 164 (382)
T ss_dssp SCEEEEECCTTCBHHH
T ss_pred ceEEEEEecCCCcHHH
Confidence 999999998 778875
No 297
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=98.65 E-value=3.1e-08 Score=97.27 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=67.0
Q ss_pred cccccccccCCcceeEEEEe-----cCCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecC--CeeeE
Q 038393 524 FSANNLIGRGGIGSVYKARI-----QDGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSND--DFKAL 595 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~-----~~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~--~~~~l 595 (618)
|.....+|.|+||.||++.+ ..|+.+|||.+.... ....+.+.+|+.++.+++||||++++++|..+ +..++
T Consensus 23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 102 (302)
T 4e5w_A 23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKL 102 (302)
T ss_dssp EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCEEE
T ss_pred hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceEEE
Confidence 55566899999999999983 368999999997543 23346799999999999999999999999877 56899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 103 v~e~~~~~~L~~ 114 (302)
T 4e5w_A 103 IMEFLPSGSLKE 114 (302)
T ss_dssp EEECCTTCBHHH
T ss_pred EEEeCCCCcHHH
Confidence 99998 778865
No 298
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=98.65 E-value=1.4e-08 Score=99.85 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=57.5
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
..|.....+|.|+||.||+|.. .++..||||++.... ....+.+.+|+.++.+++||||+++++++..++..++||||
T Consensus 15 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 94 (303)
T 2vwi_A 15 DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKL 94 (303)
T ss_dssp CCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEEC
T ss_pred hhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEehh
Confidence 3566677899999999999985 478999999986543 23356789999999999999999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 95 ~~~~~L~~ 102 (303)
T 2vwi_A 95 LSGGSVLD 102 (303)
T ss_dssp CTTCBHHH
T ss_pred ccCCchHH
Confidence 8 778765
No 299
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=98.65 E-value=3e-08 Score=97.75 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=72.3
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccccc---chhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKE---AFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~---~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||++... +++.+|+|.+...... ..+.|.+|+.++.+++||||+++++++..++..++||
T Consensus 34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 2h34_A 34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDM 113 (309)
T ss_dssp CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEE
Confidence 45777788999999999999965 7899999998654322 2367899999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 114 e~~~~~~L~~ 123 (309)
T 2h34_A 114 RLINGVDLAA 123 (309)
T ss_dssp ECCCCEEHHH
T ss_pred EecCCCCHHH
Confidence 998 557765
No 300
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=98.65 E-value=1.7e-08 Score=104.44 Aligned_cols=85 Identities=26% Similarity=0.319 Sum_probs=71.5
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecc--cccchhhHHHHHHHhhcccCCccceEeeeeecC-----Cee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQ--YKEAFKSFDIECDMMKRIRHRNLIKIISSCSND-----DFK 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~--~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~-----~~~ 593 (618)
..|.....+|.|+||.||+|... .|+.||||++... .....+.+.+|+.++.+++|||||++++++... +..
T Consensus 26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~~ 105 (432)
T 3n9x_A 26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDEL 105 (432)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCeE
Confidence 45777788999999999999864 6899999999643 223346799999999999999999999999876 568
Q ss_pred eEeeecCCCCcce
Q 038393 594 ALPLLKEDQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~~g~l~~ 606 (618)
++|||||+|+|.+
T Consensus 106 ~lv~e~~~~~L~~ 118 (432)
T 3n9x_A 106 YIVLEIADSDLKK 118 (432)
T ss_dssp EEEEECCSEEHHH
T ss_pred EEEEecCCcCHHH
Confidence 9999999888765
No 301
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=98.65 E-value=7e-09 Score=102.37 Aligned_cols=85 Identities=19% Similarity=0.316 Sum_probs=69.9
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccc---cchhhHHHHHHHhhcccCCccceEeeeeecCCee----
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK---EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK---- 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~---~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~---- 593 (618)
..|.....+|.|+||.||++.. .+|+.||||.+..... ...+.|.+|+.++.+++||||+++++++...+..
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 91 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 91 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence 3466777899999999999995 5789999999975422 2235689999999999999999999998876544
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
++||||+ +|+|.+
T Consensus 92 ~lv~e~~~g~~L~~ 105 (311)
T 3ork_A 92 YIVMEYVDGVTLRD 105 (311)
T ss_dssp EEEEECCCEEEHHH
T ss_pred EEEEecCCCCCHHH
Confidence 9999998 678765
No 302
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=98.65 E-value=2.3e-08 Score=99.77 Aligned_cols=86 Identities=24% Similarity=0.407 Sum_probs=71.4
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeecccc--------cchhhHHHHHHHhhcccCCccceEeeeeecCC
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK--------EAFKSFDIECDMMKRIRHRNLIKIISSCSNDD 591 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~--------~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~ 591 (618)
...|.....+|.|+||.||+|.. .+|+.||||.+..... ...+.|.+|+.++++++||||++++++|..++
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 34577778999999999999985 4789999999975421 13456889999999999999999999999999
Q ss_pred eeeEeeecC-CC-Ccce
Q 038393 592 FKALPLLKE-DQ-SLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~-~g-~l~~ 606 (618)
..++||||+ .| +|.+
T Consensus 103 ~~~lv~e~~~~g~~l~~ 119 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFA 119 (335)
T ss_dssp EEEEEEECCTTSCBHHH
T ss_pred EEEEEEEeCCCCccHHH
Confidence 999999997 55 5543
No 303
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=98.65 E-value=2.9e-08 Score=104.49 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=72.1
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
.|.....+|.|+||.||++... .|+.+|||++.... ....+.+.+|+.++.+++|||||+++++|...+..++|||
T Consensus 27 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 106 (484)
T 3nyv_A 27 RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGE 106 (484)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEEe
Confidence 4666778999999999999965 78999999996432 2335679999999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 107 ~~~~~~L~~ 115 (484)
T 3nyv_A 107 VYTGGELFD 115 (484)
T ss_dssp CCCSCBHHH
T ss_pred cCCCCCHHH
Confidence 97 778754
No 304
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=98.65 E-value=3.2e-08 Score=96.91 Aligned_cols=85 Identities=20% Similarity=0.319 Sum_probs=71.4
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---------ccchhhHHHHHHHhhccc-CCccceEeeeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---------KEAFKSFDIECDMMKRIR-HRNLIKIISSCSND 590 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---------~~~~~~f~~e~~~l~~l~-h~nlv~l~~~~~~~ 590 (618)
..|.....+|.|+||.||+|... +|+.+|||.+.... ....+.+.+|++++.+++ ||||+++++++..+
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~ 96 (298)
T 1phk_A 17 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN 96 (298)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred hccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeeccC
Confidence 45677778999999999999965 78999999996432 112356889999999996 99999999999999
Q ss_pred CeeeEeeecC-CCCcce
Q 038393 591 DFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 591 ~~~~lv~e~~-~g~l~~ 606 (618)
+..++||||+ +|+|.+
T Consensus 97 ~~~~lv~e~~~~~~L~~ 113 (298)
T 1phk_A 97 TFFFLVFDLMKKGELFD 113 (298)
T ss_dssp SEEEEEEECCTTCBHHH
T ss_pred CeEEEEEeccCCCcHHH
Confidence 9999999998 678765
No 305
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=98.64 E-value=3.2e-08 Score=97.25 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=71.6
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
.|.....+|.|+||.||+|... +|+.+|+|.+.... ....+.|.+|+.++.+++||||++++++|..++..++||||+
T Consensus 23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 102 (303)
T 3a7i_A 23 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL 102 (303)
T ss_dssp TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEeC
Confidence 3666778999999999999854 78999999997543 233567999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 103 ~~~~L~~ 109 (303)
T 3a7i_A 103 GGGSALD 109 (303)
T ss_dssp TTEEHHH
T ss_pred CCCcHHH
Confidence 557654
No 306
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=98.64 E-value=2.7e-08 Score=96.47 Aligned_cols=85 Identities=15% Similarity=0.270 Sum_probs=70.8
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeec--CCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSN--DDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~--~~~~~lv 596 (618)
..|.....+|.|+||.||++... +|+.+|+|.+.... ....+.|.+|+.++++++||||++++++|.. ++..++|
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv 85 (279)
T 2w5a_A 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV 85 (279)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEE
T ss_pred hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEE
Confidence 45777788999999999999965 78999999997543 2334679999999999999999999998854 5678999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 86 ~e~~~~~~L~~ 96 (279)
T 2w5a_A 86 MEYCEGGDLAS 96 (279)
T ss_dssp EECCTTEEHHH
T ss_pred EeCCCCCCHHH
Confidence 9998 568865
No 307
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=98.64 E-value=2e-08 Score=102.43 Aligned_cols=84 Identities=18% Similarity=0.307 Sum_probs=72.1
Q ss_pred ccccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhccc--CCccceEeeeeecCCeeeEeee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIR--HRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~--h~nlv~l~~~~~~~~~~~lv~e 598 (618)
.|.....+|.|+||.||++....|+.+|||.+.... ....+.|.+|++++.+++ |||||++++++..++..++|||
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E 136 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVME 136 (390)
T ss_dssp EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEE
T ss_pred ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEEe
Confidence 477778899999999999998789999999986442 233567999999999996 5999999999999999999999
Q ss_pred cCCCCcce
Q 038393 599 KEDQSLTQ 606 (618)
Q Consensus 599 ~~~g~l~~ 606 (618)
|++|+|.+
T Consensus 137 ~~~~~L~~ 144 (390)
T 2zmd_A 137 CGNIDLNS 144 (390)
T ss_dssp CCSEEHHH
T ss_pred cCCCCHHH
Confidence 87888765
No 308
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=98.64 E-value=2.3e-08 Score=99.42 Aligned_cols=85 Identities=18% Similarity=0.285 Sum_probs=68.7
Q ss_pred cccccccccccCCcceeEEEEe------cCCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI------QDGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKA 594 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~------~~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~ 594 (618)
..|.....+|.|+||.||+|.. ..+..||||.+.... ......|.+|+.++++++||||+++++++..++..+
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF 109 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcE
Confidence 3567777899999999999984 256789999996432 334567999999999999999999999999999999
Q ss_pred EeeecC-CCCcce
Q 038393 595 LPLLKE-DQSLTQ 606 (618)
Q Consensus 595 lv~e~~-~g~l~~ 606 (618)
+||||+ +|+|.+
T Consensus 110 lv~e~~~~~~L~~ 122 (327)
T 2yfx_A 110 ILMELMAGGDLKS 122 (327)
T ss_dssp EEEECCTTEEHHH
T ss_pred EEEecCCCCcHHH
Confidence 999998 778865
No 309
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=98.64 E-value=2.4e-08 Score=100.10 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=72.1
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv 596 (618)
.+|.....+|.|+||.||++... .|+.+|+|.+.... ....+.+..|..++.++ +||+|+++++++.+.+..++|
T Consensus 20 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 99 (353)
T 2i0e_A 20 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV 99 (353)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEEE
Confidence 45777789999999999999975 58899999997542 23345688899999988 899999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 100 ~E~~~gg~L~~ 110 (353)
T 2i0e_A 100 MEYVNGGDLMY 110 (353)
T ss_dssp EECCCSCBHHH
T ss_pred EeCCCCCcHHH
Confidence 9998 778865
No 310
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=98.63 E-value=3.3e-08 Score=96.11 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=71.6
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
.+|.....+|.|+||.||+|... ++..+|+|.+.... ....+.+.+|++++++++||||+++++++..++..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 35666778999999999999965 68899999986432 222456899999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 94 e~~~~~~L~~ 103 (284)
T 2vgo_A 94 EFAPRGELYK 103 (284)
T ss_dssp CCCTTEEHHH
T ss_pred EeCCCCcHHH
Confidence 998 668754
No 311
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=98.63 E-value=3.6e-08 Score=104.08 Aligned_cols=85 Identities=16% Similarity=0.337 Sum_probs=73.0
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
..|.....+|.|+||.||+++.. +|+.+|+|++.... ....+.+..|+.++.+++|||||++++++.+.+..++||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 45777788999999999999975 79999999996442 223456889999999999999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 265 E~~~gg~L~~ 274 (543)
T 3c4z_A 265 TIMNGGDIRY 274 (543)
T ss_dssp CCCTTCBHHH
T ss_pred EeccCCCHHH
Confidence 998 778854
No 312
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=98.63 E-value=2.4e-08 Score=98.65 Aligned_cols=94 Identities=22% Similarity=0.361 Sum_probs=69.7
Q ss_pred hhhhhhhcccccccccccccCCcceeEEEEec----CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeee
Q 038393 513 NFSELFQATNEFSANNLIGRGGIGSVYKARIQ----DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISS 586 (618)
Q Consensus 513 ~l~~l~~at~~~~~~~~~g~g~~g~vy~~~~~----~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~ 586 (618)
.+.++.-....|.....+|.|+||.||+|... .+..+|+|.+.... ....+.|.+|+.++++++||||++++++
T Consensus 25 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 104 (313)
T 3brb_A 25 KLEDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGV 104 (313)
T ss_dssp CTTTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEE
T ss_pred hHHhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEE
Confidence 34445455566778889999999999999864 24579999986442 2334679999999999999999999999
Q ss_pred eecCCe-----eeEeeecC-CCCcce
Q 038393 587 CSNDDF-----KALPLLKE-DQSLTQ 606 (618)
Q Consensus 587 ~~~~~~-----~~lv~e~~-~g~l~~ 606 (618)
|...+. .++||||+ +|+|.+
T Consensus 105 ~~~~~~~~~~~~~~v~e~~~~~~L~~ 130 (313)
T 3brb_A 105 CIEMSSQGIPKPMVILPFMKYGDLHT 130 (313)
T ss_dssp EEC-------CEEEEEECCTTCBHHH
T ss_pred EeeccccCCcccEEEEecccCCCHHH
Confidence 987654 49999998 778765
No 313
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=98.63 E-value=2.8e-08 Score=99.44 Aligned_cols=86 Identities=20% Similarity=0.234 Sum_probs=69.3
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeeccc-ccchhhHHHHHHH-hhcccCCccceEeeeeecCCeeeEee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY-KEAFKSFDIECDM-MKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~-~~~~~~f~~e~~~-l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
...|.....+|.|+||.||+|.. .+|+.||||++.... ....+++..|... +..++||||++++++|..++..++||
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 129 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 129 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEEE
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEEH
Confidence 34566777899999999999995 579999999996542 2233455666655 78889999999999999999999999
Q ss_pred ecCCCCcce
Q 038393 598 LKEDQSLTQ 606 (618)
Q Consensus 598 e~~~g~l~~ 606 (618)
||+.|+|.+
T Consensus 130 e~~~~~L~~ 138 (340)
T 3an0_A 130 ELMDTSLDK 138 (340)
T ss_dssp CCCSEEHHH
T ss_pred HHhhCcHHH
Confidence 999887754
No 314
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=98.62 E-value=3.1e-08 Score=107.04 Aligned_cols=77 Identities=21% Similarity=0.356 Sum_probs=65.1
Q ss_pred ccccCCcceeEEEEec---CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-CCC
Q 038393 529 LIGRGGIGSVYKARIQ---DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-DQS 603 (618)
Q Consensus 529 ~~g~g~~g~vy~~~~~---~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~g~ 603 (618)
.+|.|+||.||+|... .+..||||++.... ....+.|.+|+.++++++|||||+++|+|.. +..++||||| +|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 5899999999999864 45679999997543 2345679999999999999999999999976 5689999998 778
Q ss_pred cce
Q 038393 604 LTQ 606 (618)
Q Consensus 604 l~~ 606 (618)
|.+
T Consensus 422 L~~ 424 (613)
T 2ozo_A 422 LHK 424 (613)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 315
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=98.62 E-value=3.1e-08 Score=100.11 Aligned_cols=85 Identities=25% Similarity=0.252 Sum_probs=63.5
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc---cchhhHHHHHHH-hhcccCCccceEeeeeecCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK---EAFKSFDIECDM-MKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~---~~~~~f~~e~~~-l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
.+|.....+|.|+||.||+++.. ++..+|||.+..... ...+.+..|..+ ++.++|||||++++++.+++..++|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 45777789999999999999965 688999999975432 223456677776 5778999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 118 ~E~~~gg~L~~ 128 (373)
T 2r5t_A 118 LDYINGGELFY 128 (373)
T ss_dssp EECCCSCBHHH
T ss_pred EeCCCCCcHHH
Confidence 9998 678754
No 316
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=98.62 E-value=2.7e-08 Score=98.89 Aligned_cols=91 Identities=29% Similarity=0.385 Sum_probs=75.7
Q ss_pred hhhhhcccccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcc-cCCccceEeeeeec---
Q 038393 515 SELFQATNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRI-RHRNLIKIISSCSN--- 589 (618)
Q Consensus 515 ~~l~~at~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~--- 589 (618)
+++......|.....+|.|+||.||+|.. .+|+.||||.+.... ...+.+.+|+.++.++ +||||+++++++..
T Consensus 17 ~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 17 SALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred hhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 44555677788889999999999999996 478999999987542 3356799999999999 89999999999987
Q ss_pred ---CCeeeEeeecC-CCCcce
Q 038393 590 ---DDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 590 ---~~~~~lv~e~~-~g~l~~ 606 (618)
.+..++||||+ +|+|.+
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~ 116 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTD 116 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHH
T ss_pred ccccceEEEEEEcCCCCcHHH
Confidence 46789999998 558765
No 317
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=98.61 E-value=3.8e-08 Score=99.26 Aligned_cols=87 Identities=26% Similarity=0.292 Sum_probs=73.5
Q ss_pred hcccccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhccc-----CCccceEeeeeecCCe
Q 038393 519 QATNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR-----HRNLIKIISSCSNDDF 592 (618)
Q Consensus 519 ~at~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~-----h~nlv~l~~~~~~~~~ 592 (618)
...+.|.....+|.|+||.||+|.. .+++.||||++... ....+.+..|++++.+++ |||||++++++...+.
T Consensus 32 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~~~~ 110 (360)
T 3llt_A 32 LLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMYYDH 110 (360)
T ss_dssp EETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEETTE
T ss_pred EecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeECCe
Confidence 3455688888999999999999996 47899999998642 233456788999999886 9999999999999999
Q ss_pred eeEeeecCCCCcce
Q 038393 593 KALPLLKEDQSLTQ 606 (618)
Q Consensus 593 ~~lv~e~~~g~l~~ 606 (618)
.++||||++|+|.+
T Consensus 111 ~~lv~e~~~~~L~~ 124 (360)
T 3llt_A 111 MCLIFEPLGPSLYE 124 (360)
T ss_dssp EEEEECCCCCBHHH
T ss_pred eEEEEcCCCCCHHH
Confidence 99999999888865
No 318
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=98.61 E-value=3.4e-08 Score=98.48 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=69.0
Q ss_pred ccccccccccCCcceeEEEEecC-----CceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 523 EFSANNLIGRGGIGSVYKARIQD-----GTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~-----g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
.|.....+|.|+||.||+|.... +..||||.+.... ....+.|.+|+.++.+++||||++++++|...+..++|
T Consensus 45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 124 (333)
T 1mqb_A 45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMII 124 (333)
T ss_dssp TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEE
Confidence 34556789999999999998642 2459999997543 23345699999999999999999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 125 ~e~~~~~~L~~ 135 (333)
T 1mqb_A 125 TEYMENGALDK 135 (333)
T ss_dssp EECCTTEEHHH
T ss_pred EeCCCCCcHHH
Confidence 9998 668765
No 319
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=98.61 E-value=4.7e-08 Score=96.55 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=67.4
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||+|... +|+.+|+|.+... ...+.+.+|+.++.+++||||+++++++..++..++||||+
T Consensus 29 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 106 (314)
T 3com_A 29 EVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEYC 106 (314)
T ss_dssp -CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeecC
Confidence 45777788999999999999965 6899999998753 23467999999999999999999999999999999999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 107 ~~~~L~~ 113 (314)
T 3com_A 107 GAGSVSD 113 (314)
T ss_dssp TTEEHHH
T ss_pred CCCCHHH
Confidence 557765
No 320
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=98.61 E-value=7.4e-09 Score=105.23 Aligned_cols=87 Identities=13% Similarity=0.185 Sum_probs=67.8
Q ss_pred cccccccccccccCCcceeEEEEe-cCCceEEEEEeecc---cccchhhHHHHH---HHhhcccCCccceEe-------e
Q 038393 520 ATNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQ---YKEAFKSFDIEC---DMMKRIRHRNLIKII-------S 585 (618)
Q Consensus 520 at~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~---~~~~~~~f~~e~---~~l~~l~h~nlv~l~-------~ 585 (618)
....|.....+|.|+||.||+|.. .+|+.||||++... .....+.|.+|+ ..+++++|||||+++ +
T Consensus 71 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~ 150 (377)
T 3byv_A 71 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD 150 (377)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSE
T ss_pred CCceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhh
Confidence 345677778999999999999996 47999999999743 223346789999 566677899999999 4
Q ss_pred eeecCC-----------------eeeEeeecCCCCcce
Q 038393 586 SCSNDD-----------------FKALPLLKEDQSLTQ 606 (618)
Q Consensus 586 ~~~~~~-----------------~~~lv~e~~~g~l~~ 606 (618)
++..++ ..++||||++|+|.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~ 188 (377)
T 3byv_A 151 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQT 188 (377)
T ss_dssp EEECTTSCSEEEC------CEEESEEEEEECCSEEHHH
T ss_pred hhhccCCccccccccCCCceEEEEEEEEEeccCCCHHH
Confidence 444432 378999999888876
No 321
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=98.61 E-value=3.1e-08 Score=98.89 Aligned_cols=85 Identities=22% Similarity=0.260 Sum_probs=70.6
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhccc-CCccceEeeeee--------cCC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR-HRNLIKIISSCS--------NDD 591 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~-h~nlv~l~~~~~--------~~~ 591 (618)
..|.....+|.|+||.||++... .|+.+|||++........+.+.+|+.++.++. ||||+++++++. ...
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~ 107 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA 107 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence 35667778999999999999964 78999999986554455667999999999996 999999999994 344
Q ss_pred eeeEeeecCCCCcce
Q 038393 592 FKALPLLKEDQSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~~g~l~~ 606 (618)
..++||||+.|+|.+
T Consensus 108 ~~~lv~e~~~g~L~~ 122 (337)
T 3ll6_A 108 EFLLLTELCKGQLVE 122 (337)
T ss_dssp EEEEEEECCSEEHHH
T ss_pred eEEEEEEecCCCHHH
Confidence 579999999888765
No 322
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=98.61 E-value=5.5e-08 Score=96.87 Aligned_cols=84 Identities=27% Similarity=0.372 Sum_probs=69.8
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc--cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK--EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
..|.....+|.|+||.||++... +|+.||||.+..... ...+.+.+|+.++.+++||||++++++|..++..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 104 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE 104 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence 34666778999999999999965 689999999864332 224568899999999999999999999999999999999
Q ss_pred cCC-CCcc
Q 038393 599 KED-QSLT 605 (618)
Q Consensus 599 ~~~-g~l~ 605 (618)
|+. +++.
T Consensus 105 ~~~~~~l~ 112 (331)
T 4aaa_A 105 FVDHTILD 112 (331)
T ss_dssp CCSEEHHH
T ss_pred cCCcchHH
Confidence 984 4443
No 323
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=98.60 E-value=3.6e-08 Score=96.71 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=70.2
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeec-----------
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN----------- 589 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~----------- 589 (618)
..|.....+|.|+||.||+|... +|+.+|||.+... ....+.+.+|+.++.+++||||++++++|.+
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (303)
T 1zy4_A 6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV 84 (303)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence 45677788999999999999964 7899999998643 2334678999999999999999999999865
Q ss_pred --CCeeeEeeecC-CCCcce
Q 038393 590 --DDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 590 --~~~~~lv~e~~-~g~l~~ 606 (618)
.+..++||||+ +|+|.+
T Consensus 85 ~~~~~~~lv~e~~~~~~L~~ 104 (303)
T 1zy4_A 85 KKKSTLFIQMEYCENGTLYD 104 (303)
T ss_dssp -CEEEEEEEEECCCSCBHHH
T ss_pred ccCCceEEEEecCCCCCHHH
Confidence 45689999998 678865
No 324
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=98.60 E-value=4.1e-08 Score=101.61 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=66.8
Q ss_pred cccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEeeecCCCCc
Q 038393 526 ANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPLLKEDQSL 604 (618)
Q Consensus 526 ~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~e~~~g~l 604 (618)
....+|.|+||.||.+...+|+.||||++... ..+.+.+|+.++.++ +|||||++++++.+++..++|||||+|+|
T Consensus 19 ~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~gsL 95 (434)
T 2rio_A 19 SEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNLNL 95 (434)
T ss_dssp EEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCSEEH
T ss_pred ccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCCCCH
Confidence 34679999999998766668999999998643 235678999999987 89999999999999999999999998887
Q ss_pred ce
Q 038393 605 TQ 606 (618)
Q Consensus 605 ~~ 606 (618)
.+
T Consensus 96 ~~ 97 (434)
T 2rio_A 96 QD 97 (434)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 325
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=98.60 E-value=5.3e-08 Score=96.80 Aligned_cols=84 Identities=26% Similarity=0.519 Sum_probs=68.1
Q ss_pred ccccccccccCCcceeEEEEec-CCce--EEEEEeeccc-ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTE--VAVKVFNLQY-KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~--vavK~l~~~~-~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
+|.....+|.|+||.||+|... +|.. +|+|++.... ....+.|.+|++++.++ +||||+++++++..++..++||
T Consensus 26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv~ 105 (327)
T 1fvr_A 26 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAI 105 (327)
T ss_dssp GCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEEE
Confidence 4556678999999999999964 5664 4999886432 33456799999999999 9999999999999999999999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 106 e~~~~~~L~~ 115 (327)
T 1fvr_A 106 EYAPHGNLLD 115 (327)
T ss_dssp CCCTTCBHHH
T ss_pred ecCCCCCHHH
Confidence 998 778866
No 326
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=98.59 E-value=4.7e-08 Score=96.04 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=67.9
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc----ccchhhHHHHHHHhhcccCCccceEeeeeec--CCeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY----KEAFKSFDIECDMMKRIRHRNLIKIISSCSN--DDFKA 594 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~----~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~--~~~~~ 594 (618)
..|.....+|.|+||.||++... +++.+|+|.+.... ....+.|.+|+.++.+++||||+++++++.. .+..+
T Consensus 5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 84 (305)
T 2wtk_C 5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY 84 (305)
T ss_dssp CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEE
T ss_pred cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEE
Confidence 45777789999999999999964 78999999996542 2234679999999999999999999999853 45789
Q ss_pred EeeecCCCCcc
Q 038393 595 LPLLKEDQSLT 605 (618)
Q Consensus 595 lv~e~~~g~l~ 605 (618)
+||||+.|++.
T Consensus 85 lv~e~~~~~l~ 95 (305)
T 2wtk_C 85 MVMEYCVCGMQ 95 (305)
T ss_dssp EEEECCSEEHH
T ss_pred EEehhccCCHH
Confidence 99999866543
No 327
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=98.59 E-value=2.9e-08 Score=102.45 Aligned_cols=84 Identities=20% Similarity=0.371 Sum_probs=70.3
Q ss_pred cccccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEeee
Q 038393 520 ATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 520 at~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
+...|.....+|.|+||.||.....+|+.||||++... ....+.+|+.++.++ +|||||++++++.+++..+||||
T Consensus 22 ~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E 98 (432)
T 3p23_A 22 GKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE---CFSFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE 98 (432)
T ss_dssp TTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT---TEEECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence 33457778899999999976555568999999999643 234578899999999 89999999999999999999999
Q ss_pred cCCCCcce
Q 038393 599 KEDQSLTQ 606 (618)
Q Consensus 599 ~~~g~l~~ 606 (618)
||.|+|.+
T Consensus 99 ~~~g~L~~ 106 (432)
T 3p23_A 99 LCAATLQE 106 (432)
T ss_dssp CCSEEHHH
T ss_pred CCCCCHHH
Confidence 99888765
No 328
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=98.59 E-value=5.6e-08 Score=94.80 Aligned_cols=83 Identities=24% Similarity=0.294 Sum_probs=68.0
Q ss_pred cccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeec----CCeeeEe
Q 038393 524 FSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSN----DDFKALP 596 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~----~~~~~lv 596 (618)
|.....+|.|+||.||+|... .+..+|+|.+.... ....+.|.+|+.++++++||||++++++|.. .+..++|
T Consensus 28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 107 (290)
T 1t4h_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence 445557999999999999864 68889999987542 2335679999999999999999999999865 3568999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 108 ~e~~~~~~L~~ 118 (290)
T 1t4h_A 108 TELMTSGTLKT 118 (290)
T ss_dssp EECCCSCBHHH
T ss_pred EEecCCCCHHH
Confidence 9998 778865
No 329
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=98.59 E-value=4.5e-08 Score=96.09 Aligned_cols=81 Identities=27% Similarity=0.431 Sum_probs=65.3
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhc--ccCCccceEeeeeecCC----eeeE
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKR--IRHRNLIKIISSCSNDD----FKAL 595 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~--l~h~nlv~l~~~~~~~~----~~~l 595 (618)
..|.....+|.|+||.||+|... |+.||||.+... ..+.+..|.+++.. ++||||+++++++...+ ..++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 78 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEE
T ss_pred ceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEE
Confidence 35667778999999999999874 889999998643 34567778888877 79999999999998876 7899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 79 v~e~~~~g~L~~ 90 (303)
T 3gxj_A 79 VSDYHEHGSLFD 90 (303)
T ss_dssp EEECCTTCCHHH
T ss_pred EEeccCCCCHHH
Confidence 99998 778865
No 330
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=98.59 E-value=4.4e-08 Score=97.12 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=66.7
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--------ccchhhHHHHHHHhhcccCCccceEeeeeecCCe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--------KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF 592 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--------~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~ 592 (618)
..|.....+|.|+||.||+|... +|+.||||.+.... ......|.+|++++.+++||||+++++++..++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 88 (322)
T 2ycf_A 10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED- 88 (322)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence 35677778999999999999865 68999999986432 112346899999999999999999999997665
Q ss_pred eeEeeecC-CCCcce
Q 038393 593 KALPLLKE-DQSLTQ 606 (618)
Q Consensus 593 ~~lv~e~~-~g~l~~ 606 (618)
.++||||+ +|+|.+
T Consensus 89 ~~lv~e~~~~~~L~~ 103 (322)
T 2ycf_A 89 YYIVLELMEGGELFD 103 (322)
T ss_dssp EEEEEECCTTEETHH
T ss_pred eEEEEecCCCCcHHH
Confidence 89999998 668755
No 331
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=98.59 E-value=3.4e-08 Score=103.02 Aligned_cols=85 Identities=22% Similarity=0.214 Sum_probs=69.5
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeecc--cccchhhHHHHHHHhhcccCCccceEeeeeecCC------
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQ--YKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD------ 591 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~--~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~------ 591 (618)
...|.....+|.|+||.||+|.. ..|+.||||++... .....+.+.+|+.++++++|||||++++++...+
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 34577778899999999999985 47899999999643 2233567889999999999999999999997653
Q ss_pred eeeEeeecCCCCcc
Q 038393 592 FKALPLLKEDQSLT 605 (618)
Q Consensus 592 ~~~lv~e~~~g~l~ 605 (618)
..++|||||.|.+.
T Consensus 141 ~~~lv~E~~~~~l~ 154 (464)
T 3ttj_A 141 DVYLVMELMDANLC 154 (464)
T ss_dssp EEEEEEECCSEEHH
T ss_pred eEEEEEeCCCCCHH
Confidence 46999999977654
No 332
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=98.59 E-value=2.8e-08 Score=100.49 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=69.4
Q ss_pred hcccccccccccccCCcceeEEEE------ecCCceEEEEEeecccccchhhHHHHHHHhhccc---CCccceEeeeeec
Q 038393 519 QATNEFSANNLIGRGGIGSVYKAR------IQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR---HRNLIKIISSCSN 589 (618)
Q Consensus 519 ~at~~~~~~~~~g~g~~g~vy~~~------~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~---h~nlv~l~~~~~~ 589 (618)
.....|.....+|+|+||.||+|. ...++.||||++... ...+|..|+.++.+++ |+|+++++++|..
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~ 138 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF 138 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence 344567777899999999999993 457899999999744 3456777777777776 9999999999999
Q ss_pred CCeeeEeeecC-CCCcce
Q 038393 590 DDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 590 ~~~~~lv~e~~-~g~l~~ 606 (618)
++..++||||| +|+|.+
T Consensus 139 ~~~~~lv~e~~~~g~L~~ 156 (365)
T 3e7e_A 139 QNGSVLVGELYSYGTLLN 156 (365)
T ss_dssp SSCEEEEECCCCSCBHHH
T ss_pred CCCcEEEEeccCCCcHHH
Confidence 99999999998 788876
No 333
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=98.59 E-value=4.1e-08 Score=97.87 Aligned_cols=86 Identities=20% Similarity=0.311 Sum_probs=71.4
Q ss_pred ccccccccccccCCcceeEEEEec-CC-----ceEEEEEeeccc-ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCe
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DG-----TEVAVKVFNLQY-KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDF 592 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g-----~~vavK~l~~~~-~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~ 592 (618)
...|.....+|.|+||.||+|... .+ ..||+|.+.... ....+.+.+|+.++.++ +||||++++++|..++.
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 124 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP 124 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc
Confidence 345777789999999999999864 23 479999997543 23356799999999999 89999999999999999
Q ss_pred eeEeeecC-CCCcce
Q 038393 593 KALPLLKE-DQSLTQ 606 (618)
Q Consensus 593 ~~lv~e~~-~g~l~~ 606 (618)
.++||||+ +|+|.+
T Consensus 125 ~~lv~e~~~~g~L~~ 139 (333)
T 2i1m_A 125 VLVITEYCCYGDLLN 139 (333)
T ss_dssp CEEEEECCTTEEHHH
T ss_pred eEEEEecCCCCcHHH
Confidence 99999998 668865
No 334
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=98.59 E-value=5.2e-08 Score=96.82 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=67.8
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc-ccchhhHHHHHH-HhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-KEAFKSFDIECD-MMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-~~~~~~f~~e~~-~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
..|.....+|.|+||.||+|... +|+.||||.+.... ....+++..|+. +++.++||||+++++++..++..++|||
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e 101 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME 101 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence 34566678999999999999964 79999999997542 223345666665 7788899999999999999999999999
Q ss_pred cCCCCcce
Q 038393 599 KEDQSLTQ 606 (618)
Q Consensus 599 ~~~g~l~~ 606 (618)
|+.|++.+
T Consensus 102 ~~~~~l~~ 109 (327)
T 3aln_A 102 LMSTSFDK 109 (327)
T ss_dssp CCSEEHHH
T ss_pred ecCCChHH
Confidence 99877643
No 335
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=98.59 E-value=4.4e-08 Score=99.22 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=70.4
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCC------e
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD------F 592 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~------~ 592 (618)
..|.....+|.|+||.||+|... .|+.||||.+.... ....+.+.+|+.++++++||||+++++++...+ .
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 104 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD 104 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence 45777788999999999999854 78999999986432 233456889999999999999999999998765 6
Q ss_pred eeEeeecCCCCcce
Q 038393 593 KALPLLKEDQSLTQ 606 (618)
Q Consensus 593 ~~lv~e~~~g~l~~ 606 (618)
.++||||+.|++.+
T Consensus 105 ~~lv~e~~~~~l~~ 118 (371)
T 2xrw_A 105 VYIVMELMDANLCQ 118 (371)
T ss_dssp EEEEEECCSEEHHH
T ss_pred eEEEEEcCCCCHHH
Confidence 79999999877654
No 336
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=98.59 E-value=4.8e-08 Score=95.18 Aligned_cols=85 Identities=19% Similarity=0.134 Sum_probs=67.2
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccc--cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK--EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
..|.....+|.|+||.||++.. .+|+.+|+|++..... ...+.+.++...++.++||||++++++|..++..++|||
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~e 86 (290)
T 3fme_A 7 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICME 86 (290)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEEE
T ss_pred HhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEEe
Confidence 4567778899999999999996 4799999999964422 222334555566888999999999999999999999999
Q ss_pred cCCCCcce
Q 038393 599 KEDQSLTQ 606 (618)
Q Consensus 599 ~~~g~l~~ 606 (618)
|+.|++.+
T Consensus 87 ~~~~~l~~ 94 (290)
T 3fme_A 87 LMDTSLDK 94 (290)
T ss_dssp CCSEEHHH
T ss_pred hhccchHH
Confidence 99887643
No 337
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=98.58 E-value=5.9e-08 Score=96.04 Aligned_cols=83 Identities=22% Similarity=0.282 Sum_probs=68.1
Q ss_pred cccccccccCCcceeEEEEec-----CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecC--CeeeE
Q 038393 524 FSANNLIGRGGIGSVYKARIQ-----DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSND--DFKAL 595 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~~-----~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~--~~~~l 595 (618)
|.....+|.|+||.||++.+. .|+.||||++.... ....+.|.+|++++++++||||++++++|... ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 355568999999999988642 67889999997543 23356699999999999999999999999874 56899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ .|+|.+
T Consensus 113 v~e~~~~~~L~~ 124 (318)
T 3lxp_A 113 VMEYVPLGSLRD 124 (318)
T ss_dssp EECCCTTCBHHH
T ss_pred EEecccCCcHHH
Confidence 99998 678876
No 338
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=98.58 E-value=7.6e-08 Score=93.66 Aligned_cols=85 Identities=20% Similarity=0.289 Sum_probs=72.6
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccc--cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK--EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
..|.....+|.|+||.||++... +++.+|+|.+..... ...+.|.+|+.++++++||||+++++++..++..++|||
T Consensus 22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 101 (287)
T 2wei_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (287)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEE
Confidence 35777788999999999999965 789999999965432 235678999999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 102 ~~~~~~L~~ 110 (287)
T 2wei_A 102 LYTGGELFD 110 (287)
T ss_dssp CCCSCBHHH
T ss_pred ccCCCCHHH
Confidence 98 677754
No 339
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=98.58 E-value=3.8e-08 Score=106.69 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=64.5
Q ss_pred cccccCCcceeEEEEec---CCceEEEEEeecccc--cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-C
Q 038393 528 NLIGRGGIGSVYKARIQ---DGTEVAVKVFNLQYK--EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-D 601 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~~---~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~ 601 (618)
..+|.|+||.||+|.+. .++.||||.+..... ...++|.+|+.++.+++|||||+++++|.. +..++||||| +
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 36899999999999653 467899999975432 235679999999999999999999999964 5578999998 7
Q ss_pred CCcce
Q 038393 602 QSLTQ 606 (618)
Q Consensus 602 g~l~~ 606 (618)
|+|.+
T Consensus 454 g~L~~ 458 (635)
T 4fl3_A 454 GPLNK 458 (635)
T ss_dssp EEHHH
T ss_pred CCHHH
Confidence 78765
No 340
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=98.58 E-value=5.7e-08 Score=98.08 Aligned_cols=86 Identities=22% Similarity=0.364 Sum_probs=72.3
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeecccc--------cchhhHHHHHHHhhcc-cCCccceEeeeeecC
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK--------EAFKSFDIECDMMKRI-RHRNLIKIISSCSND 590 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~--------~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~ 590 (618)
...|.....+|.|+||.||+|... +|..||||.+..... ...+.+.+|+.++.++ +||||++++++|...
T Consensus 93 ~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 172 (365)
T 2y7j_A 93 YQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESS 172 (365)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEBS
T ss_pred hhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEeeC
Confidence 345777789999999999999975 799999999865431 1134588999999999 799999999999999
Q ss_pred CeeeEeeecC-CCCcce
Q 038393 591 DFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 591 ~~~~lv~e~~-~g~l~~ 606 (618)
+..++||||+ +|+|.+
T Consensus 173 ~~~~lv~e~~~g~~L~~ 189 (365)
T 2y7j_A 173 SFMFLVFDLMRKGELFD 189 (365)
T ss_dssp SEEEEEECCCTTCBHHH
T ss_pred CEEEEEEEeCCCCcHHH
Confidence 9999999998 668765
No 341
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=98.57 E-value=5.4e-08 Score=94.75 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=64.7
Q ss_pred ccccCCcceeEEEEec---CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC-CCC
Q 038393 529 LIGRGGIGSVYKARIQ---DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE-DQS 603 (618)
Q Consensus 529 ~~g~g~~g~vy~~~~~---~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~-~g~ 603 (618)
.+|.|+||.||+|... .+..||||.+.... ....+.|.+|+.++.+++||||++++++| ..+..++||||+ +|+
T Consensus 17 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~~~ 95 (287)
T 1u59_A 17 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGP 95 (287)
T ss_dssp EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEEECCTTEE
T ss_pred cccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEEEeCCCCC
Confidence 7899999999999853 57889999997543 23456799999999999999999999999 556789999998 667
Q ss_pred cce
Q 038393 604 LTQ 606 (618)
Q Consensus 604 l~~ 606 (618)
|.+
T Consensus 96 L~~ 98 (287)
T 1u59_A 96 LHK 98 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 342
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=98.57 E-value=5.5e-08 Score=94.43 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=68.5
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeec-----------
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN----------- 589 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~----------- 589 (618)
..|.....+|.|+||.||+|... +|+.+|+|.+... .+.+.+|+.++.+++||||+++++++..
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 86 (284)
T 2a19_B 11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN----NEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKN 86 (284)
T ss_dssp HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECC----SGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-------
T ss_pred cccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccc----cHHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccc
Confidence 35677788999999999999975 7999999998643 3568899999999999999999999864
Q ss_pred -----CCeeeEeeecC-CCCcce
Q 038393 590 -----DDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 590 -----~~~~~lv~e~~-~g~l~~ 606 (618)
.+..++||||+ +|+|.+
T Consensus 87 ~~~~~~~~~~lv~e~~~~~~L~~ 109 (284)
T 2a19_B 87 SSRSKTKCLFIQMEFCDKGTLEQ 109 (284)
T ss_dssp --CCEEEEEEEEECCCCSCBHHH
T ss_pred ccccCcceEEEEEeccCCCCHHH
Confidence 44579999998 668865
No 343
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=98.57 E-value=4.4e-08 Score=98.52 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=71.5
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecC-----Cee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSND-----DFK 593 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~-----~~~ 593 (618)
...|.....+|.|+||.||+|... +|+.||||.+.... ......+.+|+.++++++||||+++++++..+ ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 356777789999999999999965 78999999996432 22345688999999999999999999998764 678
Q ss_pred eEeeecCCCCcce
Q 038393 594 ALPLLKEDQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~~g~l~~ 606 (618)
++||||+.|+|.+
T Consensus 90 ~lv~e~~~~~L~~ 102 (353)
T 2b9h_A 90 YIIQELMQTDLHR 102 (353)
T ss_dssp EEEECCCSEEHHH
T ss_pred EEEEeccCccHHH
Confidence 9999999887765
No 344
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=98.57 E-value=3.3e-08 Score=99.91 Aligned_cols=85 Identities=22% Similarity=0.284 Sum_probs=63.9
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCC------e
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD------F 592 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~------~ 592 (618)
..|.....+|.|+||.||+|.. ..|+.||||.+.... ....+.+.+|+.++++++||||+++++++..++ .
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~~ 104 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTD 104 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCC
T ss_pred ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCce
Confidence 4567777899999999999996 479999999985322 223467899999999999999999999998764 3
Q ss_pred eeEeeecCCCCcce
Q 038393 593 KALPLLKEDQSLTQ 606 (618)
Q Consensus 593 ~~lv~e~~~g~l~~ 606 (618)
.++|||||+++|.+
T Consensus 105 ~~lv~e~~~~~L~~ 118 (367)
T 1cm8_A 105 FYLVMPFMGTDLGK 118 (367)
T ss_dssp CEEEEECCSEEHHH
T ss_pred EEEEEecCCCCHHH
Confidence 59999999777765
No 345
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=98.57 E-value=6.7e-08 Score=97.12 Aligned_cols=85 Identities=22% Similarity=0.349 Sum_probs=69.7
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccc--cchhhHHHHHHHhhcccCCccceEeeeeecC--------
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK--EAFKSFDIECDMMKRIRHRNLIKIISSCSND-------- 590 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~-------- 590 (618)
..|.....+|.|+||.||+|.. .+|+.||||++..... .....+.+|+.++.+++||||++++++|...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 4577778899999999999996 4789999998854332 2245688999999999999999999999874
Q ss_pred CeeeEeeecCCCCcce
Q 038393 591 DFKALPLLKEDQSLTQ 606 (618)
Q Consensus 591 ~~~~lv~e~~~g~l~~ 606 (618)
+..++||||+.|++.+
T Consensus 97 ~~~~lv~e~~~~~l~~ 112 (351)
T 3mi9_A 97 GSIYLVFDFCEHDLAG 112 (351)
T ss_dssp CEEEEEEECCSEEHHH
T ss_pred ceEEEEEeccCCCHHH
Confidence 4689999999776543
No 346
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=2.9e-09 Score=96.11 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=66.0
Q ss_pred CccccCCCCCCEEeCCCC-CCCCcCCcccccCCcccccCCccCCCCCCCCEEeccCcccccc----CCccccCCCCCcEE
Q 038393 72 PSELGNLSSLQTLDLSFN-WFSGSIPASIFNINMFHGKIPSTLSNCKRLRNISLSLNDFSGT----IPKEIGNVTKLIGL 146 (618)
Q Consensus 72 ~~~~~~l~~L~~L~Ls~n-~~~~~~~~~~~~~n~~~~~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L 146 (618)
...+...+.|++|+|++| .+..... ..+...+...++|++|+|++|.+... +.+.+...++|++|
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~----------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTL----------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHH----------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHH----------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEE
Confidence 344556677777777776 6631100 01233455566677777777766532 23334445667777
Q ss_pred Eeeccccccc----cCcccCCCCCCCEEec--ccCcCcccC----CccccCCCCCCEEEeecccC
Q 038393 147 YLRGNQLQGE----IPEELGNLAELEELWL--QNNFLTGTI----PSSIFNLSSLSILDLSVNNL 201 (618)
Q Consensus 147 ~L~~n~i~~~----~p~~l~~l~~L~~L~L--~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l 201 (618)
+|++|.|.+. +...+...+.|++|+| ++|.+.... ...+...++|++|++++|.+
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 7777766643 3444555566777777 666665432 22233345566666665554
No 347
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=98.56 E-value=3.3e-08 Score=97.64 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=73.7
Q ss_pred cccccccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhccc--CCccceEeeeeecCCeeeE
Q 038393 520 ATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIR--HRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 520 at~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~--h~nlv~l~~~~~~~~~~~l 595 (618)
....|.....+|.|+||.||++...+|+.+|||.+.... ....+.|.+|++++.+++ ||||+++++++..++..++
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~l 105 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYM 105 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEEE
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEEE
Confidence 344577778999999999999998889999999986432 233567999999999997 4999999999999999999
Q ss_pred eeecCCCCcce
Q 038393 596 PLLKEDQSLTQ 606 (618)
Q Consensus 596 v~e~~~g~l~~ 606 (618)
|||+.+|+|.+
T Consensus 106 v~e~~~~~L~~ 116 (313)
T 3cek_A 106 VMECGNIDLNS 116 (313)
T ss_dssp EECCCSEEHHH
T ss_pred EEecCCCcHHH
Confidence 99987888765
No 348
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=98.56 E-value=5.6e-08 Score=99.14 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=62.7
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecc--cccchhhHHHHHHHhhccc-CCccceEeeeeecCC--eeeE
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQ--YKEAFKSFDIECDMMKRIR-HRNLIKIISSCSNDD--FKAL 595 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~--~~~~~~~f~~e~~~l~~l~-h~nlv~l~~~~~~~~--~~~l 595 (618)
..|.....+|.|+||.||+|.. ..|+.||||.+... .....+.+.+|+.++.++. |||||++++++..++ ..++
T Consensus 9 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~l 88 (388)
T 3oz6_A 9 RKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVYL 88 (388)
T ss_dssp TTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEEE
T ss_pred CceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEEE
Confidence 4577778899999999999985 47899999998532 2233556889999999997 999999999998654 6799
Q ss_pred eeecCCCCcce
Q 038393 596 PLLKEDQSLTQ 606 (618)
Q Consensus 596 v~e~~~g~l~~ 606 (618)
|||||.|+|..
T Consensus 89 v~e~~~~~L~~ 99 (388)
T 3oz6_A 89 VFDYMETDLHA 99 (388)
T ss_dssp EEECCSEEHHH
T ss_pred EecccCcCHHH
Confidence 99999887754
No 349
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=98.56 E-value=3.9e-08 Score=99.47 Aligned_cols=83 Identities=28% Similarity=0.404 Sum_probs=66.5
Q ss_pred cccccccccCCcceeEEEEec--CC--ceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeec-CCeeeEee
Q 038393 524 FSANNLIGRGGIGSVYKARIQ--DG--TEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSN-DDFKALPL 597 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~~--~g--~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~-~~~~~lv~ 597 (618)
|.....+|+|+||.||+|... ++ ..+|||.+.... ....+.|.+|+.++++++|||||+++++|.. ++..++||
T Consensus 91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~ 170 (373)
T 3c1x_A 91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL 170 (373)
T ss_dssp EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEE
T ss_pred eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEE
Confidence 455568999999999999864 22 468999886432 2345679999999999999999999999865 45789999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 171 e~~~~g~L~~ 180 (373)
T 3c1x_A 171 PYMKHGDLRN 180 (373)
T ss_dssp ECCTTCBHHH
T ss_pred ECCCCCCHHH
Confidence 998 778865
No 350
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=98.55 E-value=4.4e-08 Score=98.52 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=71.5
Q ss_pred cccccccccccCCcceeEEEEe----cCCceEEEEEeeccc----ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCe
Q 038393 522 NEFSANNLIGRGGIGSVYKARI----QDGTEVAVKVFNLQY----KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDF 592 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~----~~g~~vavK~l~~~~----~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~ 592 (618)
..|.....+|.|+||.||++.. ..|+.+|||++.... ....+.+.+|+.++.++ +||||+++++++..++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 4577778999999999999986 368999999986432 22345688899999999 69999999999999999
Q ss_pred eeEeeecC-CCCcce
Q 038393 593 KALPLLKE-DQSLTQ 606 (618)
Q Consensus 593 ~~lv~e~~-~g~l~~ 606 (618)
.++||||+ +|+|.+
T Consensus 134 ~~lv~e~~~~~~L~~ 148 (355)
T 1vzo_A 134 LHLILDYINGGELFT 148 (355)
T ss_dssp EEEEECCCCSCBHHH
T ss_pred EEEEeecCCCCCHHH
Confidence 99999998 678865
No 351
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=98.55 E-value=5.9e-08 Score=94.12 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=67.4
Q ss_pred cccccccccccCCcceeEEEEec----CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ----DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~----~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
..|.....+|.|+||.||+|... .+..+|+|.+.... ....+.|.+|+.++++++||||+++++++. ++..++|
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~lv 93 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWII 93 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCEEE
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccEEE
Confidence 34666778999999999999864 24679999986432 233567999999999999999999999984 5678999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ .|+|.+
T Consensus 94 ~e~~~~~~L~~ 104 (281)
T 1mp8_A 94 MELCTLGELRS 104 (281)
T ss_dssp EECCTTEEHHH
T ss_pred EecCCCCCHHH
Confidence 9998 567765
No 352
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=98.55 E-value=5.6e-08 Score=96.54 Aligned_cols=89 Identities=27% Similarity=0.395 Sum_probs=71.8
Q ss_pred hhcccccccccccccCCcceeEEEEe--cCCceEEEEEeecccc--cchhhHHHHHHHhhcc---cCCccceEeeeee--
Q 038393 518 FQATNEFSANNLIGRGGIGSVYKARI--QDGTEVAVKVFNLQYK--EAFKSFDIECDMMKRI---RHRNLIKIISSCS-- 588 (618)
Q Consensus 518 ~~at~~~~~~~~~g~g~~g~vy~~~~--~~g~~vavK~l~~~~~--~~~~~f~~e~~~l~~l---~h~nlv~l~~~~~-- 588 (618)
..+...|.....+|.|+||.||+|.. .+|+.||+|.+..... .....+.+|++++.++ +||||++++++|.
T Consensus 7 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~ 86 (326)
T 1blx_A 7 CRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVS 86 (326)
T ss_dssp CCGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEE
T ss_pred cCchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeec
Confidence 34556788888999999999999996 4688999999865432 2234678888877766 8999999999997
Q ss_pred ---cCCeeeEeeecCCCCcce
Q 038393 589 ---NDDFKALPLLKEDQSLTQ 606 (618)
Q Consensus 589 ---~~~~~~lv~e~~~g~l~~ 606 (618)
.....++||||+.|+|.+
T Consensus 87 ~~~~~~~~~lv~e~~~~~L~~ 107 (326)
T 1blx_A 87 RTDRETKLTLVFEHVDQDLTT 107 (326)
T ss_dssp ECSSEEEEEEEEECCSCBHHH
T ss_pred ccCCCceEEEEEecCCCCHHH
Confidence 566789999999888765
No 353
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=98.55 E-value=4.5e-08 Score=98.91 Aligned_cols=86 Identities=20% Similarity=0.170 Sum_probs=71.2
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecC-----Cee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSND-----DFK 593 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~-----~~~ 593 (618)
...|.....+|.|+||.||+|... ++..||||.+.... ....+.+.+|+.++.+++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 345777789999999999999854 78999999997433 22346789999999999999999999999765 368
Q ss_pred eEeeecCCCCcce
Q 038393 594 ALPLLKEDQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~~g~l~~ 606 (618)
++||||+.|+|.+
T Consensus 106 ~iv~e~~~~~L~~ 118 (364)
T 3qyz_A 106 YIVQDLMETDLYK 118 (364)
T ss_dssp EEEEECCSEEHHH
T ss_pred EEEEcccCcCHHH
Confidence 9999999887754
No 354
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=98.55 E-value=7.7e-08 Score=97.01 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=61.1
Q ss_pred hhhcccccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCCe---
Q 038393 517 LFQATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF--- 592 (618)
Q Consensus 517 l~~at~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~--- 592 (618)
.......|.....+|.|+||.||+|... +|..||||++... ......+.+++..+++++||||++++++|...+.
T Consensus 18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~~ 96 (360)
T 3e3p_A 18 SRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD-PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERDR 96 (360)
T ss_dssp HHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC-TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSCT
T ss_pred chhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC-ccccHHHHHHHHHHHhcCCCCcccHHHhhhccccccc
Confidence 3445567888899999999999999964 7899999988543 2234567788888999999999999999976433
Q ss_pred ----eeEeeecCCCCcc
Q 038393 593 ----KALPLLKEDQSLT 605 (618)
Q Consensus 593 ----~~lv~e~~~g~l~ 605 (618)
.++||||+.|++.
T Consensus 97 ~~~~~~lv~e~~~~~l~ 113 (360)
T 3e3p_A 97 RDIYLNVVMEYVPDTLH 113 (360)
T ss_dssp TCEEEEEEEECCSCBHH
T ss_pred cceeEEEEeecccccHH
Confidence 7899999977754
No 355
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=98.55 E-value=5.4e-08 Score=94.26 Aligned_cols=82 Identities=24% Similarity=0.355 Sum_probs=67.3
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecC-CeeeEeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSND-DFKALPLLKE 600 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~-~~~~lv~e~~ 600 (618)
..|.....+|.|+||.||++.. .|..+|||.+... ...+.|.+|+.++.+++||||+++++++... +..++||||+
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~ 97 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 97 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred hhceEEeEEecCCCceEEEEEE-cCCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecC
Confidence 3466677899999999999987 4889999998643 2456799999999999999999999997665 4789999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 98 ~~~~L~~ 104 (278)
T 1byg_A 98 AKGSLVD 104 (278)
T ss_dssp TTEEHHH
T ss_pred CCCCHHH
Confidence 568865
No 356
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.54 E-value=9.3e-08 Score=94.12 Aligned_cols=86 Identities=28% Similarity=0.414 Sum_probs=67.7
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeecccc-----cchhhHHHHHHHhhccc---CCccceEeeeeecCC
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK-----EAFKSFDIECDMMKRIR---HRNLIKIISSCSNDD 591 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~-----~~~~~f~~e~~~l~~l~---h~nlv~l~~~~~~~~ 591 (618)
+..|.....+|.|+||.||+|.. ..|+.||||.+..... .....+.+|++++.+++ ||||++++++|...+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~ 87 (308)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR 87 (308)
T ss_dssp --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence 45677788999999999999995 4789999999864321 12345778888777765 999999999998765
Q ss_pred -----eeeEeeecCCCCcce
Q 038393 592 -----FKALPLLKEDQSLTQ 606 (618)
Q Consensus 592 -----~~~lv~e~~~g~l~~ 606 (618)
..++||||+.|+|.+
T Consensus 88 ~~~~~~~~lv~e~~~~~L~~ 107 (308)
T 3g33_A 88 TDREIKVTLVFEHVDQDLRT 107 (308)
T ss_dssp SSSEEEEEEEEECCCCBHHH
T ss_pred CCCceeEEEEehhhhcCHHH
Confidence 479999999888765
No 357
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=98.54 E-value=6e-08 Score=97.55 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=70.5
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCe------
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF------ 592 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~------ 592 (618)
..|.....+|.|+||.||+|... +|+.||||.+.... ....+.+.+|+.++.+++||||+++++++...+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 103 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 103 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence 45677778999999999999964 79999999986432 2234678999999999999999999999987764
Q ss_pred eeEeeecCCCCcce
Q 038393 593 KALPLLKEDQSLTQ 606 (618)
Q Consensus 593 ~~lv~e~~~g~l~~ 606 (618)
.++||||+.|+|.+
T Consensus 104 ~~lv~e~~~~~l~~ 117 (353)
T 3coi_A 104 FYLVMPFMQTDLQK 117 (353)
T ss_dssp CEEEEECCSEEGGG
T ss_pred EEEEeccccCCHHH
Confidence 39999999887765
No 358
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=98.54 E-value=1.3e-08 Score=101.70 Aligned_cols=83 Identities=23% Similarity=0.270 Sum_probs=62.8
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccc--------cchhhHHHHHHHhhccc---------CCccceEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYK--------EAFKSFDIECDMMKRIR---------HRNLIKII 584 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~--------~~~~~f~~e~~~l~~l~---------h~nlv~l~ 584 (618)
..|.....+|+|+||.||+|.. .|+.||||++..... ...+.+.+|+.++++++ |||||++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 3466677899999999999988 689999999975421 12367899999999886 66666665
Q ss_pred ee-----------------eec-------------CCeeeEeeecC-CCCcc
Q 038393 585 SS-----------------CSN-------------DDFKALPLLKE-DQSLT 605 (618)
Q Consensus 585 ~~-----------------~~~-------------~~~~~lv~e~~-~g~l~ 605 (618)
+. +.+ ++..+|||||| .|++.
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll 150 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDL 150 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEET
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccH
Confidence 54 332 67899999998 66443
No 359
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=98.53 E-value=5.4e-08 Score=98.57 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=70.9
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCee-----
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK----- 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~----- 593 (618)
..|.....+|.|+||.||+|... +|+.||||.+.... ....+.+.+|+.++++++||||++++++|...+..
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 121 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 121 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCC
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccccee
Confidence 45677778999999999999854 78999999996432 22346789999999999999999999999887765
Q ss_pred -eEeeecCCCCcce
Q 038393 594 -ALPLLKEDQSLTQ 606 (618)
Q Consensus 594 -~lv~e~~~g~l~~ 606 (618)
++||||+.|+|.+
T Consensus 122 ~~lv~e~~~~~l~~ 135 (371)
T 4exu_A 122 FYLVMPFMQTDLQK 135 (371)
T ss_dssp CEEEEECCCEEHHH
T ss_pred EEEEEccccccHHH
Confidence 9999999887654
No 360
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.53 E-value=5.1e-08 Score=107.07 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=70.1
Q ss_pred cccccccccccCCcceeEEEEec--CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCe-----e
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ--DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDF-----K 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~--~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~-----~ 593 (618)
..|.....+|.|+||.||++... +|+.||||.+.... ....+.|.+|+.++.+++|||||+++++|...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 45777778999999999999964 68999999886432 2334578999999999999999999999987665 6
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
+|||||+ +|+|.+
T Consensus 160 ~lv~E~~~g~~L~~ 173 (681)
T 2pzi_A 160 YIVMEYVGGQSLKR 173 (681)
T ss_dssp EEEEECCCCEECC-
T ss_pred EEEEEeCCCCcHHH
Confidence 9999998 678765
No 361
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.52 E-value=7.3e-08 Score=98.91 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=59.7
Q ss_pred cccccCCcceeEEEEec---CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeec--CCeeeEeeecCCC
Q 038393 528 NLIGRGGIGSVYKARIQ---DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSN--DDFKALPLLKEDQ 602 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~~---~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~--~~~~~lv~e~~~g 602 (618)
..+|.|+||.||+|... .+..+|||.+... ...+.+.+|+.++.+++|||||+++++|.. +...++||||+.|
T Consensus 27 ~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~~ 104 (405)
T 3rgf_A 27 CKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH 104 (405)
T ss_dssp CCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCSE
T ss_pred cEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCCC
Confidence 47999999999999964 5788999998643 234568899999999999999999999954 6789999999987
Q ss_pred Ccce
Q 038393 603 SLTQ 606 (618)
Q Consensus 603 ~l~~ 606 (618)
++.+
T Consensus 105 ~l~~ 108 (405)
T 3rgf_A 105 DLWH 108 (405)
T ss_dssp EHHH
T ss_pred CHHH
Confidence 7643
No 362
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=98.52 E-value=1e-07 Score=93.38 Aligned_cols=81 Identities=26% Similarity=0.363 Sum_probs=64.8
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhc--ccCCccceEeeeeecC----CeeeE
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKR--IRHRNLIKIISSCSND----DFKAL 595 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~--l~h~nlv~l~~~~~~~----~~~~l 595 (618)
..|.....+|.|+||.||+|.. +|+.||||++... ..+.+..|.+++.. ++||||+++++++... +..++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l 83 (301)
T 3q4u_A 8 RDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL 83 (301)
T ss_dssp GGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred CcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence 4577778999999999999988 6899999998643 33456666666655 8999999999997653 45899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 84 v~e~~~~g~L~~ 95 (301)
T 3q4u_A 84 ITHYHEMGSLYD 95 (301)
T ss_dssp EECCCTTCBHHH
T ss_pred ehhhccCCCHHH
Confidence 99998 778865
No 363
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=98.52 E-value=7.6e-08 Score=97.16 Aligned_cols=86 Identities=22% Similarity=0.257 Sum_probs=66.5
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecC------C
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSND------D 591 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~------~ 591 (618)
...|.....+|.|+||.||+|.. ..|+.||||++.... ....+.+.+|+.++++++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 34577778899999999999985 478999999986432 23356788999999999999999999999764 5
Q ss_pred eeeEeeecCCCCcce
Q 038393 592 FKALPLLKEDQSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~~g~l~~ 606 (618)
..++|+||++++|.+
T Consensus 108 ~~~lv~e~~~~~L~~ 122 (367)
T 2fst_X 108 DVYLVTHLMGADLNN 122 (367)
T ss_dssp CCEEEEECCCEECC-
T ss_pred eEEEEecccCCCHHH
Confidence 679999999888866
No 364
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=98.51 E-value=7.3e-08 Score=95.75 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=62.5
Q ss_pred ccccccccccCCcceeEEEEec-CCce----EEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTE----VAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~----vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
.|.....+|.|+||.||+|... +|.. ||+|.+.... ....+.|.+|+.++++++|||||+++++|..++ .++|
T Consensus 16 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~v 94 (327)
T 3poz_A 16 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLI 94 (327)
T ss_dssp GEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEEE
T ss_pred HcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEEE
Confidence 4666778999999999999853 4543 5888875432 334567999999999999999999999998765 7789
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
+||+ +|+|.+
T Consensus 95 ~e~~~~g~L~~ 105 (327)
T 3poz_A 95 TQLMPFGCLLD 105 (327)
T ss_dssp EECCTTCBHHH
T ss_pred EEecCCCcHHH
Confidence 9997 888765
No 365
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=98.51 E-value=1.1e-07 Score=92.19 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=68.2
Q ss_pred ccccccccccccCCcceeEEEEecC----CceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeE
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQD----GTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~~----g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~l 595 (618)
...|.....+|.|+||.||+|.... +..+|+|.+.... ....+.|.+|+.++.+++||||+++++++.+ +..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 3457777889999999999998642 2469999987542 2345679999999999999999999999864 45789
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 90 v~e~~~~~~L~~ 101 (281)
T 3cc6_A 90 IMELYPYGELGH 101 (281)
T ss_dssp EEECCTTCBHHH
T ss_pred EEecCCCCCHHH
Confidence 99998 678765
No 366
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=98.51 E-value=7.4e-08 Score=94.26 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=66.9
Q ss_pred cccccccccCCcceeEEEEec-CC---ceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCee-eEee
Q 038393 524 FSANNLIGRGGIGSVYKARIQ-DG---TEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFK-ALPL 597 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~~-~g---~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~-~lv~ 597 (618)
|.....+|.|+||.||+|... ++ ..+|+|.+.... ....+.|.+|+.++++++||||++++++|..++.. ++||
T Consensus 23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~ 102 (298)
T 3pls_A 23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL 102 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence 445578999999999999853 23 369999986433 23356799999999999999999999999876655 9999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 103 e~~~~~~L~~ 112 (298)
T 3pls_A 103 PYMCHGDLLQ 112 (298)
T ss_dssp CCCTTCBHHH
T ss_pred ecccCCCHHH
Confidence 997 888865
No 367
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=98.50 E-value=1.6e-07 Score=93.48 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=69.6
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhccc-CCccceEeeeeec--CCeeeEee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR-HRNLIKIISSCSN--DDFKALPL 597 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~-h~nlv~l~~~~~~--~~~~~lv~ 597 (618)
..|.....+|.|+||.||+|.. .+++.+|||.+... ..+.+.+|+.++.+++ ||||+++++++.. ....++||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~ 112 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 112 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence 4577778899999999999985 57899999998643 3467999999999997 9999999999987 56789999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|++.+
T Consensus 113 e~~~~~~l~~ 122 (330)
T 3nsz_A 113 EHVNNTDFKQ 122 (330)
T ss_dssp ECCCCCCHHH
T ss_pred eccCchhHHH
Confidence 998 677654
No 368
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=98.50 E-value=7.1e-08 Score=95.30 Aligned_cols=86 Identities=19% Similarity=0.299 Sum_probs=70.1
Q ss_pred ccccccccccccCCcceeEEEEe------cCCceEEEEEeecccc-cchhhHHHHHHHhhcc-cCCccceEeeeeecCC-
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI------QDGTEVAVKVFNLQYK-EAFKSFDIECDMMKRI-RHRNLIKIISSCSNDD- 591 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~------~~g~~vavK~l~~~~~-~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~- 591 (618)
...|.....+|.|+||.||+|.. ..++.||||.+..... ...+.+.+|+.++.++ +||||++++++|...+
T Consensus 26 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~ 105 (316)
T 2xir_A 26 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGG 105 (316)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTTS
T ss_pred hhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEEEEecCCC
Confidence 45677778999999999999974 3468899999975432 2345799999999999 7999999999998765
Q ss_pred eeeEeeecC-CCCcce
Q 038393 592 FKALPLLKE-DQSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~-~g~l~~ 606 (618)
..++||||+ +|+|.+
T Consensus 106 ~~~lv~e~~~~~~L~~ 121 (316)
T 2xir_A 106 PLMVIVEFCKFGNLST 121 (316)
T ss_dssp CCEEEEECCTTEEHHH
T ss_pred ceEEEEEcCCCCcHHH
Confidence 589999998 668865
No 369
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=98.49 E-value=8.9e-08 Score=93.41 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=65.7
Q ss_pred cccccc-ccccCCcceeEEEEe---cCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 523 EFSANN-LIGRGGIGSVYKARI---QDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 523 ~~~~~~-~~g~g~~g~vy~~~~---~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
.|.... .+|.|+||.||+|.. ..+..+|||.+.... ....+.|.+|+.++.+++||||++++++| ..+..++|
T Consensus 17 ~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~lv 95 (291)
T 1xbb_A 17 LLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWMLV 95 (291)
T ss_dssp GEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEEEE
T ss_pred hhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcEEE
Confidence 344445 899999999999964 246889999986543 22356799999999999999999999999 56778999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 96 ~e~~~~~~L~~ 106 (291)
T 1xbb_A 96 MEMAELGPLNK 106 (291)
T ss_dssp EECCTTEEHHH
T ss_pred EEeCCCCCHHH
Confidence 9998 677765
No 370
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=98.49 E-value=1e-07 Score=94.66 Aligned_cols=83 Identities=19% Similarity=0.313 Sum_probs=66.1
Q ss_pred ccccccccccCCcceeEEEEec-CCce----EEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTE----VAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~----vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
.|.....+|.|+||.||+|... +|.. +|+|.+.... ....+.+.+|+.++++++|||||+++++|. ++..++|
T Consensus 14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v 92 (325)
T 3kex_A 14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQLV 92 (325)
T ss_dssp TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEEE
T ss_pred HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEEE
Confidence 4566678999999999999853 5554 7788775332 334567889999999999999999999986 5668899
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 93 ~e~~~~~~L~~ 103 (325)
T 3kex_A 93 TQYLPLGSLLD 103 (325)
T ss_dssp EECCTTCBSHH
T ss_pred EEeCCCCCHHH
Confidence 9997 788865
No 371
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=98.49 E-value=9.4e-08 Score=93.56 Aligned_cols=85 Identities=26% Similarity=0.343 Sum_probs=67.3
Q ss_pred cccccccccccCCcceeEEEEecC----CceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeec-CCeeeE
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQD----GTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSN-DDFKAL 595 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~----g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~-~~~~~l 595 (618)
..|.....+|.|+||.||+|...+ +..+|+|.+.... ....+.|.+|+.++++++||||++++++|.. ++..++
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 104 (298)
T 3f66_A 25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 104 (298)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence 346667789999999999998542 2358999886432 2334679999999999999999999999764 557899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 105 v~e~~~~~~L~~ 116 (298)
T 3f66_A 105 VLPYMKHGDLRN 116 (298)
T ss_dssp EEECCTTCBHHH
T ss_pred EEeCCCCCCHHH
Confidence 99998 668865
No 372
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=98.48 E-value=8.1e-08 Score=98.93 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=64.1
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecC----C--eeeE
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSND----D--FKAL 595 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~----~--~~~l 595 (618)
.|.....+|.|+||.||+|... .|..||||.+... .+.+.+|++++++++|||||+++++|... + ..++
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~----~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~l 130 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD----KRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL 130 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC----TTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEE
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc----chhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEe
Confidence 4667778999999999999975 6899999998532 23456799999999999999999998542 2 3679
Q ss_pred eeecCCCCcc
Q 038393 596 PLLKEDQSLT 605 (618)
Q Consensus 596 v~e~~~g~l~ 605 (618)
||||+.|++.
T Consensus 131 v~e~~~~~l~ 140 (420)
T 1j1b_A 131 VLDYVPETVY 140 (420)
T ss_dssp EEECCCEEHH
T ss_pred ehhcccccHH
Confidence 9999977654
No 373
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=8.8e-08 Score=86.25 Aligned_cols=18 Identities=22% Similarity=0.063 Sum_probs=8.9
Q ss_pred CCCCCCCEEEcccc-cCcc
Q 038393 331 SNCKYLKYFSLSNN-LLDG 348 (618)
Q Consensus 331 ~~~~~L~~L~ls~n-~l~~ 348 (618)
...+.|++|++++| .+..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~ 51 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPV 51 (185)
T ss_dssp TTCTTCCEEECTTCTTCCH
T ss_pred hcCCCCCEEEecCCCCCCH
Confidence 34455555555555 4443
No 374
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=98.47 E-value=1.6e-07 Score=93.90 Aligned_cols=81 Identities=27% Similarity=0.424 Sum_probs=68.6
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhc--ccCCccceEeeeeecCC----eeeE
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKR--IRHRNLIKIISSCSNDD----FKAL 595 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~--l~h~nlv~l~~~~~~~~----~~~l 595 (618)
..|.....+|.|+||.||+|.. .|+.||||.+... ..+.+..|++++.. ++||||+++++++...+ ..++
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~l 117 (342)
T 1b6c_B 42 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 117 (342)
T ss_dssp HHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEE
T ss_pred ccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEE
Confidence 4577778999999999999998 5899999998643 34567888888877 79999999999998876 7899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 118 v~e~~~~g~L~~ 129 (342)
T 1b6c_B 118 VSDYHEHGSLFD 129 (342)
T ss_dssp EECCCTTCBHHH
T ss_pred EEeecCCCcHHH
Confidence 99998 668875
No 375
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=98.46 E-value=1.1e-07 Score=95.35 Aligned_cols=85 Identities=19% Similarity=0.167 Sum_probs=63.2
Q ss_pred cccccccccccCCcceeEEEEec----CCceEEEEEeeccccc-----------chhhHHHHHHHhhcccCCccceEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ----DGTEVAVKVFNLQYKE-----------AFKSFDIECDMMKRIRHRNLIKIISS 586 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~----~g~~vavK~l~~~~~~-----------~~~~f~~e~~~l~~l~h~nlv~l~~~ 586 (618)
..|.....+|+|+||.||+|... .+..+|+|........ ..+.+.+|+..+.+++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 34666778999999999999964 5788999998643211 12347788899999999999999999
Q ss_pred eec----CCeeeEeeecCCCCcce
Q 038393 587 CSN----DDFKALPLLKEDQSLTQ 606 (618)
Q Consensus 587 ~~~----~~~~~lv~e~~~g~l~~ 606 (618)
+.. ++..++||||++|+|.+
T Consensus 117 ~~~~~~~~~~~~lv~e~~~~~L~~ 140 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERLGIDLQK 140 (345)
T ss_dssp EEEESSSCEEEEEEEECEEEEHHH
T ss_pred cccccCCCcEEEEEEeccCCCHHH
Confidence 988 77899999999778876
No 376
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=98.46 E-value=2.3e-07 Score=92.15 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=67.3
Q ss_pred cccccCCcceeEEEEec-CCceEEEEEeeccc--ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEeeecC-CC
Q 038393 528 NLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY--KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPLLKE-DQ 602 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~e~~-~g 602 (618)
..+|.|+||.||+|... +|+.+|+|.+.... ....+.+.+|+.++.++ +||||++++++|..++..++||||+ +|
T Consensus 35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~~ 114 (327)
T 3lm5_A 35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILILEYAAGG 114 (327)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEECCTTE
T ss_pred ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEEEecCCC
Confidence 57999999999999865 78999999986543 22346789999999999 5699999999999999999999998 66
Q ss_pred Ccce
Q 038393 603 SLTQ 606 (618)
Q Consensus 603 ~l~~ 606 (618)
+|.+
T Consensus 115 ~L~~ 118 (327)
T 3lm5_A 115 EIFS 118 (327)
T ss_dssp EGGG
T ss_pred cHHH
Confidence 7765
No 377
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=98.44 E-value=2.4e-07 Score=90.61 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=71.9
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
..|.....+|.|+||.||+|.. .+|+.||||.+... ...+.+.+|+..+.++ +|+|++++++++..++..++||||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~ 87 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR--SDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL 87 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECC--TTSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccC--CccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEe
Confidence 3467778899999999999995 57999999988633 2345799999999999 899999999999999999999999
Q ss_pred CCCCcce
Q 038393 600 EDQSLTQ 606 (618)
Q Consensus 600 ~~g~l~~ 606 (618)
++|+|.+
T Consensus 88 ~~~~L~~ 94 (298)
T 1csn_A 88 LGPSLED 94 (298)
T ss_dssp CCCBHHH
T ss_pred cCCCHHH
Confidence 9888876
No 378
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.44 E-value=2.3e-07 Score=101.30 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=71.8
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccc---ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv 596 (618)
.+|.....+|+|+||.||+|... .++.+|||.+.... ....+.+..|..++.++ +||+|+++++++.+.+..|||
T Consensus 341 ~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~lV 420 (674)
T 3pfq_A 341 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFV 420 (674)
T ss_dssp TTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEEE
T ss_pred cceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEEE
Confidence 45777789999999999999965 68899999997432 23345688899999987 799999999999999999999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 421 ~E~~~gg~L~~ 431 (674)
T 3pfq_A 421 MEYVNGGDLMY 431 (674)
T ss_dssp EECCCSCBHHH
T ss_pred EeCcCCCcHHH
Confidence 9998 778865
No 379
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=98.43 E-value=2e-07 Score=90.78 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=60.6
Q ss_pred ccccccccccCCcceeEEEEec--CCc--eEEEEEeeccc---ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeE
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ--DGT--EVAVKVFNLQY---KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~--~g~--~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~l 595 (618)
.|.....+|.|+||.||+|... ++. .||||++.... ....+.|.+|+.++.+++||||+++++++..++ .++
T Consensus 19 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~~ 97 (291)
T 1u46_A 19 DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MKM 97 (291)
T ss_dssp GEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CEE
T ss_pred HeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-cee
Confidence 4666678999999999999853 333 68999886432 233567999999999999999999999998765 889
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ .|+|.+
T Consensus 98 v~e~~~~~~L~~ 109 (291)
T 1u46_A 98 VTELAPLGSLLD 109 (291)
T ss_dssp EEECCTTCBHHH
T ss_pred eEecccCCCHHH
Confidence 99998 678765
No 380
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=98.42 E-value=2.6e-07 Score=92.07 Aligned_cols=81 Identities=26% Similarity=0.343 Sum_probs=64.7
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhc--ccCCccceEeeeeecC----CeeeE
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKR--IRHRNLIKIISSCSND----DFKAL 595 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~--l~h~nlv~l~~~~~~~----~~~~l 595 (618)
+.|.....+|.|+||.||+|... |..||||++... ....+..|.+++.. ++||||+++++++... +..++
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 112 (337)
T 3mdy_A 37 KQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYL 112 (337)
T ss_dssp HHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEE
T ss_pred cceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEE
Confidence 45777889999999999999875 899999998643 23344555555544 4999999999999887 67899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 113 v~e~~~~g~L~~ 124 (337)
T 3mdy_A 113 ITDYHENGSLYD 124 (337)
T ss_dssp EECCCTTCBHHH
T ss_pred EEeccCCCcHHH
Confidence 99998 778865
No 381
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=98.42 E-value=2.6e-07 Score=91.29 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=60.1
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeeccccc-c-hhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKE-A-FKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~-~-~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
..|.....+|.|+||.||+|... +|+.||||.+...... . .+.+.++..++..++||||+++++++..++..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~e 104 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAME 104 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEEe
Confidence 45666778999999999999975 7899999999754322 2 2334455567888899999999999999999999999
Q ss_pred cCCCCc
Q 038393 599 KEDQSL 604 (618)
Q Consensus 599 ~~~g~l 604 (618)
|+++.+
T Consensus 105 ~~~~~~ 110 (318)
T 2dyl_A 105 LMGTCA 110 (318)
T ss_dssp CCSEEH
T ss_pred ccCCcH
Confidence 985443
No 382
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=98.41 E-value=9.3e-08 Score=96.09 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=66.0
Q ss_pred cccccccccccCCcceeEEEEec---------CCceEEEEEeecccccchhhHHHHHHHhhcccCCccce----------
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ---------DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIK---------- 582 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~---------~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~---------- 582 (618)
..|.....+|.|+||.||+|... +++.+|+|.+... +.+.+|++++.+++|||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 45777788999999999999965 3789999998632 57999999999999999998
Q ss_pred -----Eeeeeec-CCeeeEeeecCCCCcce
Q 038393 583 -----IISSCSN-DDFKALPLLKEDQSLTQ 606 (618)
Q Consensus 583 -----l~~~~~~-~~~~~lv~e~~~g~l~~ 606 (618)
+++++.. ++..++||||++|+|.+
T Consensus 117 ~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~ 146 (352)
T 2jii_A 117 LAIPTCMGFGVHQDKYRFLVLPSLGRSLQS 146 (352)
T ss_dssp CSCCCCCEEEEETTTEEEEEEECCCEEHHH
T ss_pred cCccchhhccccCCcEEEEEecCCCcCHHH
Confidence 6777776 67899999999888876
No 383
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=98.41 E-value=6.9e-08 Score=103.54 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=69.8
Q ss_pred cccccccccccCCcceeEEEEec-CCceEEEEEeecc-cccchhhHHHHHHHhhcccCCccceEeeeeec------CCee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQ-YKEAFKSFDIECDMMKRIRHRNLIKIISSCSN------DDFK 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~-~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~------~~~~ 593 (618)
..|.....+|.|+||.||+|... +|..||||++... .....+.|.+|++++.+++|||||++++++.. ++..
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~ 93 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP 93 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence 45777789999999999999864 7899999998643 23345679999999999999999999999866 6778
Q ss_pred eEeeecC-CCCcce
Q 038393 594 ALPLLKE-DQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~-~g~l~~ 606 (618)
++||||+ +|+|.+
T Consensus 94 ~LVmEy~~ggsL~~ 107 (676)
T 3qa8_A 94 LLAMEYCEGGDLRK 107 (676)
T ss_dssp CCEEECCSSCBHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 9999998 778865
No 384
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=98.41 E-value=1.7e-07 Score=94.57 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=65.5
Q ss_pred ccccccccccccCCcceeEEEEecC------CceEEEEEeeccccc-----------chhhHHHHHHHhhcccCCccceE
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQD------GTEVAVKVFNLQYKE-----------AFKSFDIECDMMKRIRHRNLIKI 583 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~~------g~~vavK~l~~~~~~-----------~~~~f~~e~~~l~~l~h~nlv~l 583 (618)
+..|.....+|.|+||.||+|.... ++.||||.+...... ....+..|+..+.+++|||||++
T Consensus 34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~ 113 (364)
T 3op5_A 34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY 113 (364)
T ss_dssp CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence 4567778899999999999998754 478999998643211 11234556677888899999999
Q ss_pred eeeeecC----CeeeEeeecCCCCcce
Q 038393 584 ISSCSND----DFKALPLLKEDQSLTQ 606 (618)
Q Consensus 584 ~~~~~~~----~~~~lv~e~~~g~l~~ 606 (618)
+++|... ...+|||||++|+|.+
T Consensus 114 ~~~~~~~~~~~~~~~lv~e~~g~~L~~ 140 (364)
T 3op5_A 114 WGSGLHDKNGKSYRFMIMDRFGSDLQK 140 (364)
T ss_dssp EEEEEEEETTEEEEEEEEECEEEEHHH
T ss_pred EeeeeeccCCcceEEEEEeCCCCCHHH
Confidence 9999875 4589999999778765
No 385
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=98.40 E-value=2.8e-07 Score=100.27 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=68.2
Q ss_pred cccccccccccCCcceeEEEEec----CCceEEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEe
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ----DGTEVAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALP 596 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~----~g~~vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv 596 (618)
..|.....+|+|+||.||+|... .+..+|+|.+.... ....+.|.+|+.++++++|||||+++|+|. ++..++|
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~lv 468 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVWII 468 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEE
T ss_pred ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceEEE
Confidence 44666778999999999999863 24679999886432 233467999999999999999999999985 5668999
Q ss_pred eecC-CCCcce
Q 038393 597 LLKE-DQSLTQ 606 (618)
Q Consensus 597 ~e~~-~g~l~~ 606 (618)
|||+ +|+|.+
T Consensus 469 ~E~~~~g~L~~ 479 (656)
T 2j0j_A 469 MELCTLGELRS 479 (656)
T ss_dssp EECCTTCBHHH
T ss_pred EEcCCCCcHHH
Confidence 9998 788865
No 386
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=98.40 E-value=2e-07 Score=91.66 Aligned_cols=81 Identities=28% Similarity=0.448 Sum_probs=64.8
Q ss_pred ccccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
.|.....+|.|+||.||+|... ..+|+|.++... ....+.|.+|++++.+++||||+++++++. .+..++||||+
T Consensus 37 ~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~ 113 (307)
T 3lb7_A 37 EVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQWC 113 (307)
T ss_dssp SCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEECC
T ss_pred ceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEecC
Confidence 4555668999999999999864 358888876432 233467999999999999999999999875 55688999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 114 ~~~~L~~ 120 (307)
T 3lb7_A 114 EGSSLYK 120 (307)
T ss_dssp SSCBHHH
T ss_pred CCCcHHH
Confidence 778765
No 387
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=98.39 E-value=1.7e-07 Score=95.63 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=64.2
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeeeecCC------eeeE
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSCSNDD------FKAL 595 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~------~~~l 595 (618)
..|.....+|.|+||.||+|....+..+|+|.+... .+...+|+.++++++|||||+++++|...+ ..++
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~----~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 115 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQD----KRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL 115 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECC----TTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecC----cchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence 347777899999999999999876767999988532 233457999999999999999999996543 3789
Q ss_pred eeecCCCCcc
Q 038393 596 PLLKEDQSLT 605 (618)
Q Consensus 596 v~e~~~g~l~ 605 (618)
||||+.|++.
T Consensus 116 v~e~~~~~l~ 125 (394)
T 4e7w_A 116 VLEYVPETVY 125 (394)
T ss_dssp EEECCSEEHH
T ss_pred EeeccCccHH
Confidence 9999976543
No 388
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=98.36 E-value=2.6e-07 Score=90.00 Aligned_cols=81 Identities=25% Similarity=0.427 Sum_probs=65.0
Q ss_pred ccccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeeecC
Q 038393 523 EFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e~~ 600 (618)
.|.....+|.|+||.||+|... ..+|||.+.... ....+.|.+|+.++++++||||+++++++ ..+..++||||+
T Consensus 25 ~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~e~~ 101 (289)
T 3og7_A 25 QITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVTQWC 101 (289)
T ss_dssp SCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEEECC
T ss_pred ceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEEEec
Confidence 3566678999999999999864 359999986443 23346799999999999999999999976 456689999998
Q ss_pred -CCCcce
Q 038393 601 -DQSLTQ 606 (618)
Q Consensus 601 -~g~l~~ 606 (618)
+|+|.+
T Consensus 102 ~~~~L~~ 108 (289)
T 3og7_A 102 EGSSLYH 108 (289)
T ss_dssp CEEEHHH
T ss_pred CCCcHHH
Confidence 677754
No 389
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=98.36 E-value=1.5e-07 Score=93.14 Aligned_cols=84 Identities=24% Similarity=0.482 Sum_probs=69.9
Q ss_pred ccccccccccccCCcceeEEEEecCCceEEEEEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEeee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
...|.....+|.|+||.||+|.... .+|+|.+.... ....+.|.+|+.++.+++||||++++++|..++..++|||
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e 109 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITS 109 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECB
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEee
Confidence 3456777899999999999998743 49999886432 2334678899999999999999999999999999999999
Q ss_pred cC-CCCcce
Q 038393 599 KE-DQSLTQ 606 (618)
Q Consensus 599 ~~-~g~l~~ 606 (618)
|+ +|+|.+
T Consensus 110 ~~~~~~L~~ 118 (319)
T 2y4i_B 110 LCKGRTLYS 118 (319)
T ss_dssp CCCSEEHHH
T ss_pred cccCCcHHH
Confidence 98 677765
No 390
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=98.35 E-value=3.9e-07 Score=90.44 Aligned_cols=84 Identities=23% Similarity=0.315 Sum_probs=66.3
Q ss_pred cccccccccccCCcceeEEEEec-CCce----EEEEEeeccc-ccchhhHHHHHHHhhcccCCccceEeeeeecCCeeeE
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQ-DGTE----VAVKVFNLQY-KEAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~-~g~~----vavK~l~~~~-~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~l 595 (618)
..|.....+|.|+||.||+|... ++.. +|+|.+.... ....+.|.+|+.++++++||||++++++|..++ .++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~ 93 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL 93 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence 34667778999999999999853 5554 4777765332 334567999999999999999999999998765 778
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
|+||+ .|+|.+
T Consensus 94 v~~~~~~g~L~~ 105 (327)
T 3lzb_A 94 ITQLMPFGCLLD 105 (327)
T ss_dssp EECCCSSCBHHH
T ss_pred EEEecCCCcHHH
Confidence 89996 778765
No 391
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=98.34 E-value=4.4e-07 Score=88.83 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=62.2
Q ss_pred cccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHh-hcccCCccceEeeeeec----CCeeeEeeecC-
Q 038393 528 NLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMM-KRIRHRNLIKIISSCSN----DDFKALPLLKE- 600 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l-~~l~h~nlv~l~~~~~~----~~~~~lv~e~~- 600 (618)
..+|.|+||.||++.. .+|+.+|+|.+.. ...+.+|++++ ...+||||+++++++.. ....++||||+
T Consensus 24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~ 98 (299)
T 3m2w_A 24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLD 98 (299)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCC
T ss_pred cccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEEEEeecC
Confidence 5799999999999986 4789999999853 34577888887 55699999999999876 66789999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 99 ~~~L~~ 104 (299)
T 3m2w_A 99 GGELFS 104 (299)
T ss_dssp SCBHHH
T ss_pred CCcHHH
Confidence 668865
No 392
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=98.34 E-value=4.8e-07 Score=93.36 Aligned_cols=83 Identities=18% Similarity=0.281 Sum_probs=68.5
Q ss_pred ccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhcc------cCCccceEeeeeecCCeeeE
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRI------RHRNLIKIISSCSNDDFKAL 595 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l------~h~nlv~l~~~~~~~~~~~l 595 (618)
.|.....+|.|+||.||+|... .++.||||.+... ....+.+.+|+.++.++ .|+||++++++|...+..++
T Consensus 98 ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~l 176 (429)
T 3kvw_A 98 RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICM 176 (429)
T ss_dssp TEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEE
T ss_pred cEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEE
Confidence 4667778999999999999865 6899999999643 22345677888877776 56799999999999999999
Q ss_pred eeecCCCCcce
Q 038393 596 PLLKEDQSLTQ 606 (618)
Q Consensus 596 v~e~~~g~l~~ 606 (618)
||||+.|+|.+
T Consensus 177 v~e~~~~~L~~ 187 (429)
T 3kvw_A 177 TFELLSMNLYE 187 (429)
T ss_dssp EECCCCCBHHH
T ss_pred EEeccCCCHHH
Confidence 99999888765
No 393
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=98.33 E-value=1.7e-07 Score=92.36 Aligned_cols=85 Identities=22% Similarity=0.373 Sum_probs=63.7
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccc------cchhhHHHHHHHhhcc----cCCccceEeeeeecC
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK------EAFKSFDIECDMMKRI----RHRNLIKIISSCSND 590 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~------~~~~~f~~e~~~l~~l----~h~nlv~l~~~~~~~ 590 (618)
..|.....+|.|+||.||+|.. .+|+.||||.+..... .....+..|+.++.++ +||||+++++++..+
T Consensus 31 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~~ 110 (312)
T 2iwi_A 31 AEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQ 110 (312)
T ss_dssp --CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC---
T ss_pred hceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEecC
Confidence 4577778999999999999985 4789999999964321 2234577899999988 899999999999999
Q ss_pred CeeeEeeec-C-CCCcce
Q 038393 591 DFKALPLLK-E-DQSLTQ 606 (618)
Q Consensus 591 ~~~~lv~e~-~-~g~l~~ 606 (618)
+..++|||| + +|+|.+
T Consensus 111 ~~~~~v~e~~~~~~~L~~ 128 (312)
T 2iwi_A 111 EGFMLVLERPLPAQDLFD 128 (312)
T ss_dssp --CEEEEECCSSEEEHHH
T ss_pred CeEEEEEEecCCCCCHHH
Confidence 999999999 5 667765
No 394
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=98.32 E-value=4.1e-07 Score=92.90 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=60.9
Q ss_pred cccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhc-ccCCccceEeeeeec----CCeeeEeeecC-
Q 038393 528 NLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKR-IRHRNLIKIISSCSN----DDFKALPLLKE- 600 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~-l~h~nlv~l~~~~~~----~~~~~lv~e~~- 600 (618)
..+|.|+||.||++... .|..||||.+.. ...+.+|++++.+ .+|||||+++++|.. .+..+||||||
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~ 142 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMECLD 142 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred ceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEEEEEeCC
Confidence 57999999999999864 789999999863 3457788887754 489999999999875 56789999998
Q ss_pred CCCcce
Q 038393 601 DQSLTQ 606 (618)
Q Consensus 601 ~g~l~~ 606 (618)
+|+|.+
T Consensus 143 gg~L~~ 148 (400)
T 1nxk_A 143 GGELFS 148 (400)
T ss_dssp SEEHHH
T ss_pred CCcHHH
Confidence 678865
No 395
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=98.32 E-value=4.1e-07 Score=92.96 Aligned_cols=84 Identities=15% Similarity=0.206 Sum_probs=68.8
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhccc--------CCccceEeeeee----
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR--------HRNLIKIISSCS---- 588 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~--------h~nlv~l~~~~~---- 588 (618)
..|.....+|.|+||.||+|.. .+|+.||||++... ....+.+.+|+.++.+++ |+||+++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~ 115 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV 115 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence 3466777899999999999985 47899999999643 223467889999999986 788999999998
Q ss_pred cCCeeeEeeecCCCCcce
Q 038393 589 NDDFKALPLLKEDQSLTQ 606 (618)
Q Consensus 589 ~~~~~~lv~e~~~g~l~~ 606 (618)
.+...++||||++|++.+
T Consensus 116 ~~~~~~lv~e~~~~~l~~ 133 (397)
T 1wak_A 116 NGTHICMVFEVLGHHLLK 133 (397)
T ss_dssp TEEEEEEEECCCCCBHHH
T ss_pred CCceEEEEEeccCccHHH
Confidence 566899999999777654
No 396
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=98.30 E-value=5.6e-07 Score=89.70 Aligned_cols=81 Identities=28% Similarity=0.347 Sum_probs=61.1
Q ss_pred cccccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHH--HHHHHhhcccCCccceEeeeeec-----CCeee
Q 038393 522 NEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFD--IECDMMKRIRHRNLIKIISSCSN-----DDFKA 594 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~--~e~~~l~~l~h~nlv~l~~~~~~-----~~~~~ 594 (618)
..|.....+|.|+||.||+|.. +++.||||++.... ...+. .|+..+..++||||+++++++.. ....+
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~ 88 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYL 88 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEE
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEE
Confidence 3466667899999999999977 68999999997442 23344 44445566899999999985532 23568
Q ss_pred EeeecC-CCCcce
Q 038393 595 LPLLKE-DQSLTQ 606 (618)
Q Consensus 595 lv~e~~-~g~l~~ 606 (618)
+||||+ +|+|.+
T Consensus 89 lv~e~~~~g~L~~ 101 (336)
T 3g2f_A 89 LVMEYYPNGSLXK 101 (336)
T ss_dssp EEECCCTTCBHHH
T ss_pred EEEecCCCCcHHH
Confidence 999998 778865
No 397
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=98.27 E-value=5.2e-07 Score=89.90 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=70.4
Q ss_pred cccccccccccCCcceeEEEEe--cCCceEEEEEeecccccchhhHHHHHHHhhcccCCc------cceEeeeeecCCee
Q 038393 522 NEFSANNLIGRGGIGSVYKARI--QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRN------LIKIISSCSNDDFK 593 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~--~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~n------lv~l~~~~~~~~~~ 593 (618)
..|.....+|.|+||.||++.. .+|+.||||.+.... ...+.+.+|+.++.+++|++ ++++++++..++..
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~ 92 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI 92 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence 3567777899999999999985 368999999986432 23466889999999888775 99999999999999
Q ss_pred eEeeecCCCCcce
Q 038393 594 ALPLLKEDQSLTQ 606 (618)
Q Consensus 594 ~lv~e~~~g~l~~ 606 (618)
++||||++|++.+
T Consensus 93 ~lv~e~~~~~l~~ 105 (339)
T 1z57_A 93 CIVFELLGLSTYD 105 (339)
T ss_dssp EEEEECCCCBHHH
T ss_pred EEEEcCCCCCHHH
Confidence 9999999888765
No 398
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=3.7e-07 Score=79.96 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=35.7
Q ss_pred CCCEEeccCccccccCCccccCCCCCcEEEeeccc-cccccCcccCCC----CCCCEEecccCc-CcccCCccccCCCCC
Q 038393 118 RLRNISLSLNDFSGTIPKEIGNVTKLIGLYLRGNQ-LQGEIPEELGNL----AELEELWLQNNF-LTGTIPSSIFNLSSL 191 (618)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L 191 (618)
.|++||+++|.++...-..+..+++|+.|+|++|. |++..-..+..+ ++|++|+|++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333334445555555555543 433322333332 235555555542 443322334444445
Q ss_pred CEEEeecc
Q 038393 192 SILDLSVN 199 (618)
Q Consensus 192 ~~L~l~~n 199 (618)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555444
No 399
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=98.23 E-value=1.1e-06 Score=85.65 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=69.0
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeee-ecCCeeeEeee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSC-SNDDFKALPLL 598 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~-~~~~~~~lv~e 598 (618)
...|.....+|.|+||.||+|.. .+|+.+|||.+.... ..+.+.+|+.++.+++|+++++.+++| ..++..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 35677788999999999999995 589999999986432 335699999999999998877767666 56677899999
Q ss_pred cCCCCcce
Q 038393 599 KEDQSLTQ 606 (618)
Q Consensus 599 ~~~g~l~~ 606 (618)
|++|+|.+
T Consensus 86 ~~~~~L~~ 93 (296)
T 3uzp_A 86 LLGPSLED 93 (296)
T ss_dssp CCCCBHHH
T ss_pred ecCCCHHH
Confidence 99888875
No 400
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=98.23 E-value=7.2e-07 Score=90.24 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=54.9
Q ss_pred ccccccccccccCCcceeEEEEec-CCceEEEEEeecccc---cchhhHHHHHHHhhcc--cCCccceEee-------ee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK---EAFKSFDIECDMMKRI--RHRNLIKIIS-------SC 587 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~---~~~~~f~~e~~~l~~l--~h~nlv~l~~-------~~ 587 (618)
...|.....+|.|+||.||+|... +|+.+|||++..... ...+.+.+|+.++..+ +||||++++. ++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 345777788999999999999964 789999999976432 2345677885444444 6999888553 33
Q ss_pred ecC-----------------CeeeEeeecCCCCcce
Q 038393 588 SND-----------------DFKALPLLKEDQSLTQ 606 (618)
Q Consensus 588 ~~~-----------------~~~~lv~e~~~g~l~~ 606 (618)
..+ +..+||||||.|+|.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~ 176 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLEL 176 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHH
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHH
Confidence 222 3379999999888876
No 401
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=98.23 E-value=9.3e-07 Score=87.42 Aligned_cols=86 Identities=23% Similarity=0.366 Sum_probs=70.7
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeeccccc------chhhHHHHHHHhhccc--CCccceEeeeeecCC
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKE------AFKSFDIECDMMKRIR--HRNLIKIISSCSNDD 591 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~------~~~~f~~e~~~l~~l~--h~nlv~l~~~~~~~~ 591 (618)
...|.....+|.|+||.||+|.. .+|+.||||.+...... ..+.+..|+.++.+++ |+||+++++++..++
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~ 121 (320)
T 3a99_A 42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD 121 (320)
T ss_dssp TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC
Confidence 34577778999999999999985 47899999999754321 2356889999999996 599999999999999
Q ss_pred eeeEeeecCC--CCcce
Q 038393 592 FKALPLLKED--QSLTQ 606 (618)
Q Consensus 592 ~~~lv~e~~~--g~l~~ 606 (618)
..++||||+. |+|.+
T Consensus 122 ~~~lv~e~~~~~~~L~~ 138 (320)
T 3a99_A 122 SFVLILERPEPVQDLFD 138 (320)
T ss_dssp EEEEEEECCSSEEEHHH
T ss_pred cEEEEEEcCCCCccHHH
Confidence 9999999973 56654
No 402
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=98.22 E-value=9.9e-07 Score=89.61 Aligned_cols=86 Identities=20% Similarity=0.303 Sum_probs=70.2
Q ss_pred cccccccccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhccc-CC-----ccceEeeeeecCCe
Q 038393 520 ATNEFSANNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR-HR-----NLIKIISSCSNDDF 592 (618)
Q Consensus 520 at~~~~~~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~-h~-----nlv~l~~~~~~~~~ 592 (618)
....|.....+|.|+||.||+|... +|+.||||++... ....+++..|+.++..++ |+ +++++++++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 3456778889999999999999865 7899999999743 223456778888888775 55 49999999999999
Q ss_pred eeEeeecCCCCcce
Q 038393 593 KALPLLKEDQSLTQ 606 (618)
Q Consensus 593 ~~lv~e~~~g~l~~ 606 (618)
.++||||+.|+|.+
T Consensus 131 ~~lv~e~~~~~L~~ 144 (382)
T 2vx3_A 131 LCLVFEMLSYNLYD 144 (382)
T ss_dssp EEEEEECCCCBHHH
T ss_pred eEEEEecCCCCHHH
Confidence 99999999888765
No 403
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=98.21 E-value=1.4e-06 Score=84.86 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=66.5
Q ss_pred ccccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcccCCccceEeeee-ecCCeeeEeee
Q 038393 521 TNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNLIKIISSC-SNDDFKALPLL 598 (618)
Q Consensus 521 t~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nlv~l~~~~-~~~~~~~lv~e 598 (618)
.+.|.....+|.|+||.||+|.. ..|+.||||.+.... ..+.+..|+.++.+++|++++..+++| ..++..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 4hgt_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEE
Confidence 35677788999999999999995 578999999875432 335699999999999998888777766 56778899999
Q ss_pred cCCCCcce
Q 038393 599 KEDQSLTQ 606 (618)
Q Consensus 599 ~~~g~l~~ 606 (618)
|++|+|.+
T Consensus 86 ~~~~~L~~ 93 (296)
T 4hgt_A 86 LLGPSLED 93 (296)
T ss_dssp CCCCBHHH
T ss_pred ccCCCHHH
Confidence 99888875
No 404
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=8.9e-07 Score=83.73 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=31.8
Q ss_pred ccCCCceEEcccccccc--CCchhhhcCCCCCeEEcCCCcceeccchhhhccc--CCCceecCCCCCc
Q 038393 405 KLQKLQLLSFEDNQLEG--SIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLT--YLKKLNLGSNQLT 468 (618)
Q Consensus 405 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~ 468 (618)
.+++|+.|+|++|+|++ .++..+..+++|+.|+|++|++++. ..+..+. +|+.|++++|++.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 45566666666666654 2234445556666666666665543 2222222 4555555555544
No 405
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=98.15 E-value=3e-06 Score=88.35 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=68.4
Q ss_pred cccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhcccC-CccceEeeeeecCCeeeEeeec
Q 038393 522 NEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRH-RNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 522 ~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h-~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
+.|.....+|.|+||.||+|.. .+|..||||.+.... ..+++..|++++..++| ++++.+..++...+..+|||||
T Consensus 7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme~ 84 (483)
T 3sv0_A 7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT--KHPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMDL 84 (483)
T ss_dssp TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTC--SSCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccc--ccHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEEC
Confidence 4677888999999999999995 579999999876432 24568999999999977 5666777777888899999999
Q ss_pred CCCCcce
Q 038393 600 EDQSLTQ 606 (618)
Q Consensus 600 ~~g~l~~ 606 (618)
++|+|.+
T Consensus 85 ~g~sL~~ 91 (483)
T 3sv0_A 85 LGPSLED 91 (483)
T ss_dssp CCCBHHH
T ss_pred CCCCHHH
Confidence 9888865
No 406
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.15 E-value=8.6e-07 Score=89.74 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=68.5
Q ss_pred ccccccccccCCcceeEEEEe-cCCceEEEEEeecccccchhhHHHHHHHhhccc-----------CCccceEeeeeecC
Q 038393 523 EFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR-----------HRNLIKIISSCSND 590 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~-----------h~nlv~l~~~~~~~ 590 (618)
.|.....+|.|+||.||+|.. .+|+.||||.+... ....+.+.+|+.++.+++ ||||+++++++...
T Consensus 20 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 98 (373)
T 1q8y_A 20 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK 98 (373)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred eEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhcc
Confidence 466677899999999999995 47899999998643 223466889999998887 89999999999865
Q ss_pred C----eeeEeeecCCCCcce
Q 038393 591 D----FKALPLLKEDQSLTQ 606 (618)
Q Consensus 591 ~----~~~lv~e~~~g~l~~ 606 (618)
+ ..++||||++|+|.+
T Consensus 99 ~~~~~~~~lv~e~~~~~L~~ 118 (373)
T 1q8y_A 99 GPNGVHVVMVFEVLGENLLA 118 (373)
T ss_dssp ETTEEEEEEEECCCCEEHHH
T ss_pred CCCCceEEEEEecCCCCHHH
Confidence 4 789999999888765
No 407
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=98.15 E-value=1.8e-06 Score=86.02 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=59.5
Q ss_pred cccc-ccccccCCcceeEEEEec-CCceEEEEEeecccccchhhHHHHH-HHhhcccCCccceEeeeeec----CCeeeE
Q 038393 523 EFSA-NNLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIEC-DMMKRIRHRNLIKIISSCSN----DDFKAL 595 (618)
Q Consensus 523 ~~~~-~~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~-~~l~~l~h~nlv~l~~~~~~----~~~~~l 595 (618)
.|.. ..++|.|+||.||+|... +|+.||||.+... .....|+ ..+..+.||||+++++++.. ++..++
T Consensus 29 ~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 103 (336)
T 3fhr_A 29 DYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCLLI 103 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred eeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceEEE
Confidence 3444 346899999999999965 7999999998642 1222333 34566799999999999876 455899
Q ss_pred eeecC-CCCcce
Q 038393 596 PLLKE-DQSLTQ 606 (618)
Q Consensus 596 v~e~~-~g~l~~ 606 (618)
||||+ +|+|.+
T Consensus 104 v~e~~~gg~L~~ 115 (336)
T 3fhr_A 104 IMECMEGGELFS 115 (336)
T ss_dssp EEECCTTEEHHH
T ss_pred EEeccCCCCHHH
Confidence 99998 668765
No 408
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=98.14 E-value=1.5e-06 Score=84.02 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=64.0
Q ss_pred hhhcccccccccccccCCcceeEEEEecCCceEEEEEeecccc------------------cchhhHHHHHHHhhcccCC
Q 038393 517 LFQATNEFSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYK------------------EAFKSFDIECDMMKRIRHR 578 (618)
Q Consensus 517 l~~at~~~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~------------------~~~~~f~~e~~~l~~l~h~ 578 (618)
+......+.....+|.|+||.||+|..++|+.+|+|.+..... .....|.+|++++++++
T Consensus 85 ~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-- 162 (282)
T 1zar_A 85 LVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-- 162 (282)
T ss_dssp HHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--
Confidence 3334444556678999999999999987799999999864321 12345899999999999
Q ss_pred ccceEeeeeecCCeeeEeeecC-CCCcce
Q 038393 579 NLIKIISSCSNDDFKALPLLKE-DQSLTQ 606 (618)
Q Consensus 579 nlv~l~~~~~~~~~~~lv~e~~-~g~l~~ 606 (618)
| +++.+++. .+..++||||+ +|+|.+
T Consensus 163 ~-~~v~~~~~-~~~~~lvmE~~~g~~L~~ 189 (282)
T 1zar_A 163 G-LAVPKVYA-WEGNAVLMELIDAKELYR 189 (282)
T ss_dssp T-SSSCCEEE-EETTEEEEECCCCEEGGG
T ss_pred C-CCcCeEEe-ccceEEEEEecCCCcHHH
Confidence 4 66666553 46679999998 668876
No 409
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=98.13 E-value=1.5e-06 Score=92.09 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=58.3
Q ss_pred cccccccCCcceeEEEEecCCceEEEEEeecccc--------cchhhHHHHHHHhhcccCCccceEeeeeecCCeeeEee
Q 038393 526 ANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYK--------EAFKSFDIECDMMKRIRHRNLIKIISSCSNDDFKALPL 597 (618)
Q Consensus 526 ~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~--------~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~~~~~lv~ 597 (618)
....+|+|+||.||++.. .+..+++|+...... ...+.|.+|++++++++||||+++..++..++..+|||
T Consensus 340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm 418 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM 418 (540)
T ss_dssp --------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred CCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence 345899999999999965 578889998643211 11345899999999999999998888888888899999
Q ss_pred ecC-CCCcce
Q 038393 598 LKE-DQSLTQ 606 (618)
Q Consensus 598 e~~-~g~l~~ 606 (618)
||+ +|+|.+
T Consensus 419 E~~~ggsL~~ 428 (540)
T 3en9_A 419 SYINGKLAKD 428 (540)
T ss_dssp ECCCSEEHHH
T ss_pred ECCCCCCHHH
Confidence 998 688865
No 410
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1.3e-06 Score=76.36 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=45.7
Q ss_pred ccceeeeCCcccccccCccccccCCCceEEccccc-cccCCchhhhcC----CCCCeEEcCCCc-ceeccchhhhcccCC
Q 038393 384 NLIAIYLGGNKLNGTIPITLGKLQKLQLLSFEDNQ-LEGSIPNDLCRL----AALFQLDLGGNM-LSGFIPACFGNLTYL 457 (618)
Q Consensus 384 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 457 (618)
.|+.||++++.+++.....+.++++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666666555444455566666666666663 554333334432 246666666653 555444455556666
Q ss_pred CceecCCCC
Q 038393 458 KKLNLGSNQ 466 (618)
Q Consensus 458 ~~L~l~~n~ 466 (618)
+.|++++++
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666554
No 411
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=98.07 E-value=2.8e-06 Score=85.22 Aligned_cols=83 Identities=13% Similarity=0.237 Sum_probs=68.7
Q ss_pred ccccccccccCCcceeEEEEec-CC-ceEEEEEeecccccchhhHHHHHHHhhcccCCc------cceEeeeeecCCeee
Q 038393 523 EFSANNLIGRGGIGSVYKARIQ-DG-TEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRN------LIKIISSCSNDDFKA 594 (618)
Q Consensus 523 ~~~~~~~~g~g~~g~vy~~~~~-~g-~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~n------lv~l~~~~~~~~~~~ 594 (618)
.|.....+|.|+||.||+|... .+ ..||+|.+... ....+.+..|+.++.+++|++ ++.+++++...+..+
T Consensus 20 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (355)
T 2eu9_A 20 RYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMC 98 (355)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEE
T ss_pred cEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEE
Confidence 4667778999999999999864 44 78999999643 233467889999999998877 899999999999999
Q ss_pred EeeecCCCCcce
Q 038393 595 LPLLKEDQSLTQ 606 (618)
Q Consensus 595 lv~e~~~g~l~~ 606 (618)
+||||++|++.+
T Consensus 99 lv~e~~~~~l~~ 110 (355)
T 2eu9_A 99 IAFELLGKNTFE 110 (355)
T ss_dssp EEEECCCCBHHH
T ss_pred EEEeccCCChHH
Confidence 999999777654
No 412
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=97.94 E-value=4e-06 Score=89.37 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=54.5
Q ss_pred cCCcceeEEEE-ecCCceEEEEEeeccc----------ccchhhHHHHHHHhhcc-cCCccceEeeeeecCCeeeEeeec
Q 038393 532 RGGIGSVYKAR-IQDGTEVAVKVFNLQY----------KEAFKSFDIECDMMKRI-RHRNLIKIISSCSNDDFKALPLLK 599 (618)
Q Consensus 532 ~g~~g~vy~~~-~~~g~~vavK~l~~~~----------~~~~~~f~~e~~~l~~l-~h~nlv~l~~~~~~~~~~~lv~e~ 599 (618)
.|..|..+.++ ...|..+|||++.... ....++|.+|+++|+++ .|+||+++++|+.+++..||||||
T Consensus 244 ~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEy 323 (569)
T 4azs_A 244 AGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEK 323 (569)
T ss_dssp --------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEEC
T ss_pred cCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEec
Confidence 34444444433 3358889999995321 12245699999999999 799999999999999999999999
Q ss_pred C-CCCcce
Q 038393 600 E-DQSLTQ 606 (618)
Q Consensus 600 ~-~g~l~~ 606 (618)
+ +|+|.+
T Consensus 324 v~G~~L~d 331 (569)
T 4azs_A 324 LPGRLLSD 331 (569)
T ss_dssp CCSEEHHH
T ss_pred CCCCcHHH
Confidence 8 778877
No 413
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=97.51 E-value=8.6e-05 Score=70.54 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=53.8
Q ss_pred cccccccccCCcceeEEEEe-cCCce--EEEEEeeccccc------------------------chhhHHHHHHHhhccc
Q 038393 524 FSANNLIGRGGIGSVYKARI-QDGTE--VAVKVFNLQYKE------------------------AFKSFDIECDMMKRIR 576 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~-~~g~~--vavK~l~~~~~~------------------------~~~~f~~e~~~l~~l~ 576 (618)
+.....+|.|+||.||+|.. ++|.. +|||.+...... ....+.+|+..+.+++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 34456899999999999997 68988 999987532110 0125889999999999
Q ss_pred CCcc--ceEeeeeecCCeeeEeeecC
Q 038393 577 HRNL--IKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 577 h~nl--v~l~~~~~~~~~~~lv~e~~ 600 (618)
|+++ +.++++ +..+|||||+
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~ 150 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFI 150 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECC
T ss_pred hCCCCCCeEEEc----CCCEEEEEec
Confidence 9865 344432 4678999998
No 414
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=0.00022 Score=63.55 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=6.8
Q ss_pred cccceeeeCCcccc
Q 038393 383 TNLIAIYLGGNKLN 396 (618)
Q Consensus 383 ~~L~~L~L~~n~i~ 396 (618)
+.|+.|+|++|.|.
T Consensus 70 ~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 70 KHIEKFSLANTAIS 83 (197)
T ss_dssp SCCCEEECTTSCCB
T ss_pred CCcCEEEccCCCCC
Confidence 44445555555444
No 415
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.17 E-value=0.00021 Score=73.03 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=47.4
Q ss_pred hhcccccccccccccCCcceeEEEEe-cCCceEEEEEeecccc---cchhhHHHHHHHhhcccC
Q 038393 518 FQATNEFSANNLIGRGGIGSVYKARI-QDGTEVAVKVFNLQYK---EAFKSFDIECDMMKRIRH 577 (618)
Q Consensus 518 ~~at~~~~~~~~~g~g~~g~vy~~~~-~~g~~vavK~l~~~~~---~~~~~f~~e~~~l~~l~h 577 (618)
...+..|.....+|+|+||.||+|.. .+|+.||||++..... ...+.|.+|+.++..++|
T Consensus 74 ~~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 74 GERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp SSCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred CCCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence 34555677778999999999999994 5799999999873322 235679999999999987
No 416
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00039 Score=61.99 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=58.4
Q ss_pred CCCCCEEEcCCC-CCccCc---cccccCCCCCCCEEEcccccCccccchhhhhccccccEEEeeecccccCCchhhhccc
Q 038393 308 LTKLEKLDLQFN-RLRELS---FLSSLSNCKYLKYFSLSNNLLDGILPRAIGNLSQSIEEFWIVSCNISGGIPEEISNLT 383 (618)
Q Consensus 308 l~~L~~L~L~~n-~l~~~~---~~~~l~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 383 (618)
-+.|+.|+|++| .|.+.. ....+...+.|+.|+|++|++.+....++. ..+..-+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA---------------------~aL~~N~ 98 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI---------------------ELIETSP 98 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH---------------------HHHHHCS
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH---------------------HHHhcCC
Confidence 344555555543 443210 113344556677777777776654433333 2334445
Q ss_pred ccceeeeCCcccccccC----ccccccCCCceEEccccc---cccC----CchhhhcCCCCCeEEcCCCcc
Q 038393 384 NLIAIYLGGNKLNGTIP----ITLGKLQKLQLLSFEDNQ---LEGS----IPNDLCRLAALFQLDLGGNML 443 (618)
Q Consensus 384 ~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~---l~~~----~~~~~~~l~~L~~L~Ls~n~l 443 (618)
.|+.|+|++|.|.+... +.+..-+.|++|+|++|. +... +...+..-+.|+.|+++.|.+
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 67777777777664322 233344556777776542 2211 223344455666666665554
No 417
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=97.13 E-value=0.00017 Score=71.88 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=29.2
Q ss_pred cccccccccCCcceeEEEEecCCceEEEEEeec
Q 038393 524 FSANNLIGRGGIGSVYKARIQDGTEVAVKVFNL 556 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~ 556 (618)
+.....||.|++|.||.|..++|+.||||.++.
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~ 129 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRL 129 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence 566678999999999999998999999998754
No 418
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=96.68 E-value=0.0026 Score=61.14 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=56.9
Q ss_pred ccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCC---ccceEeeeeecCCeeeEeeecCCC
Q 038393 527 NNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHR---NLIKIISSCSNDDFKALPLLKEDQ 602 (618)
Q Consensus 527 ~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~---nlv~l~~~~~~~~~~~lv~e~~~g 602 (618)
...++.|.++.+|++...+|+.++||+...........|..|++.++.++|. .+++++++. ..++||||+.|
T Consensus 20 ~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 20 VAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred eeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 3457889999999999889999999987543333346799999999999876 577888764 47899999854
No 419
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.67 E-value=0.002 Score=53.52 Aligned_cols=61 Identities=25% Similarity=0.364 Sum_probs=42.9
Q ss_pred eEEccccccc-cCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCCCCCcCCCcc
Q 038393 411 LLSFEDNQLE-GSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGSNQLTSTSST 473 (618)
Q Consensus 411 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 473 (618)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.+....
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 5666666665 2344322 23678888888888877777888888888888888888876543
No 420
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=96.61 E-value=0.0056 Score=57.92 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=61.8
Q ss_pred cccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhccc-CCccceEeeeeecCCeeeEeeecCCC
Q 038393 524 FSANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR-HRNLIKIISSCSNDDFKALPLLKEDQ 602 (618)
Q Consensus 524 ~~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~-h~nlv~l~~~~~~~~~~~lv~e~~~g 602 (618)
+......+.++.+.||+.... |..+++|............+.+|++++..+. |..+.++++++...+..|+||||+.|
T Consensus 16 ~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G 94 (263)
T 3tm0_A 16 YRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADG 94 (263)
T ss_dssp SEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCSS
T ss_pred ceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEecCC
Confidence 433445666777889998864 6789999986533233457999999999884 67788999999998999999999855
Q ss_pred -Ccc
Q 038393 603 -SLT 605 (618)
Q Consensus 603 -~l~ 605 (618)
++.
T Consensus 95 ~~l~ 98 (263)
T 3tm0_A 95 VLCS 98 (263)
T ss_dssp EEHH
T ss_pred eehh
Confidence 443
No 421
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=96.45 E-value=0.0068 Score=57.20 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=55.0
Q ss_pred ccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCcc--ceEeeeeecCCeeeEeeecCCC-Cc
Q 038393 531 GRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNL--IKIISSCSNDDFKALPLLKEDQ-SL 604 (618)
Q Consensus 531 g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nl--v~l~~~~~~~~~~~lv~e~~~g-~l 604 (618)
+.|..+.||+....+|..+++|..... ....+..|++++..+.+.++ .++++++..++..++||||+.| ++
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l 102 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL 102 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCccc
Confidence 455568999998877888999986533 23568899999998865554 5688888888889999999855 54
No 422
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.92 E-value=0.011 Score=48.96 Aligned_cols=36 Identities=31% Similarity=0.307 Sum_probs=16.9
Q ss_pred CCCEEecccCcCcccCCccccCCCCCCEEEeecccC
Q 038393 166 ELEELWLQNNFLTGTIPSSIFNLSSLSILDLSVNNL 201 (618)
Q Consensus 166 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 201 (618)
+|++|+|++|.|+...+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 344555555555443333444444455555544433
No 423
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=92.09 E-value=0.21 Score=49.40 Aligned_cols=75 Identities=8% Similarity=0.078 Sum_probs=52.4
Q ss_pred cccccCCcceeEEEEecCCceEEEEEee--ccc-ccchhhHHHHHHHhhccc--CCccceEeeeeecC---CeeeEeeec
Q 038393 528 NLIGRGGIGSVYKARIQDGTEVAVKVFN--LQY-KEAFKSFDIECDMMKRIR--HRNLIKIISSCSND---DFKALPLLK 599 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~~~g~~vavK~l~--~~~-~~~~~~f~~e~~~l~~l~--h~nlv~l~~~~~~~---~~~~lv~e~ 599 (618)
..++.|.++.+|+....+ ..+++|+.. ... ......+.+|.+++..+. +..+++++++|.+. +..++||||
T Consensus 44 ~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme~ 122 (359)
T 3dxp_A 44 EQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIMEF 122 (359)
T ss_dssp EECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEEC
T ss_pred EEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEEe
Confidence 346788899999988754 567888765 332 123457889999999886 45678999998876 458999999
Q ss_pred CCCC
Q 038393 600 EDQS 603 (618)
Q Consensus 600 ~~g~ 603 (618)
+.|.
T Consensus 123 v~G~ 126 (359)
T 3dxp_A 123 VSGR 126 (359)
T ss_dssp CCCB
T ss_pred cCCe
Confidence 8553
No 424
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=90.51 E-value=0.33 Score=46.26 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=51.7
Q ss_pred ccccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCC---ccceEeeeeecCCeeeEeeecCC
Q 038393 525 SANNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHR---NLIKIISSCSNDDFKALPLLKED 601 (618)
Q Consensus 525 ~~~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~---nlv~l~~~~~~~~~~~lv~e~~~ 601 (618)
.....+|.|..+.||+.++.+|+.+.||+-..........|..|.+.|..+.-. -+.+++++ +..++||||..
T Consensus 18 ~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e~l~ 93 (288)
T 3f7w_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEECCC
T ss_pred EEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEEeec
Confidence 344457889999999999999999999986544333345689999988877422 23455544 23479999963
No 425
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=90.45 E-value=0.74 Score=44.35 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=55.4
Q ss_pred ccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhccc---CCccceEeeeeecCCeeeEeeecCCCC
Q 038393 529 LIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR---HRNLIKIISSCSNDDFKALPLLKEDQS 603 (618)
Q Consensus 529 ~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~---h~nlv~l~~~~~~~~~~~lv~e~~~g~ 603 (618)
.++.|....+|+... ++..+++|+-... ....|..|.+.|..+. ..-++++++++..++..++||||..|.
T Consensus 43 ~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~ 116 (312)
T 3jr1_A 43 KLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS 116 (312)
T ss_dssp EECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred EeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence 467788899999886 4667888976533 2456889998888874 356889999998888999999998554
No 426
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=88.16 E-value=0.67 Score=46.48 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=47.6
Q ss_pred cccccCCcceeEEEEec-CCceEEEEEeecccc-------cchhhHHHHHHHhhcccC--Ccc-ceEeeeeecCCeeeEe
Q 038393 528 NLIGRGGIGSVYKARIQ-DGTEVAVKVFNLQYK-------EAFKSFDIECDMMKRIRH--RNL-IKIISSCSNDDFKALP 596 (618)
Q Consensus 528 ~~~g~g~~g~vy~~~~~-~g~~vavK~l~~~~~-------~~~~~f~~e~~~l~~l~h--~nl-v~l~~~~~~~~~~~lv 596 (618)
..+|.|..+.||++... +++.++||......+ .....+..|.+++..+.. +.. .+++.+ +.+..++|
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~lv 113 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV 113 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEEE
Confidence 35788999999999764 468899998653221 123456788888887742 333 455544 35567899
Q ss_pred eecCCC
Q 038393 597 LLKEDQ 602 (618)
Q Consensus 597 ~e~~~g 602 (618)
|||..|
T Consensus 114 mE~l~g 119 (397)
T 2olc_A 114 MEDLSH 119 (397)
T ss_dssp ECCCTT
T ss_pred EEeCCC
Confidence 999865
No 427
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=84.51 E-value=2.5 Score=39.43 Aligned_cols=68 Identities=15% Similarity=0.025 Sum_probs=50.0
Q ss_pred CCcc-eeEEEEec-CCceEEEEEeecccccchhhHHHHHHHhhccc-CCccceEeeeeecCCeeeEeeecCCCC
Q 038393 533 GGIG-SVYKARIQ-DGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR-HRNLIKIISSCSNDDFKALPLLKEDQS 603 (618)
Q Consensus 533 g~~g-~vy~~~~~-~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~-h~nlv~l~~~~~~~~~~~lv~e~~~g~ 603 (618)
|.-+ .||+.... ++..+.+|+-... ....+.+|.+.|..+. +--+.++++++..++..++||||+.|.
T Consensus 35 G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~ 105 (272)
T 4gkh_A 35 GQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGK 105 (272)
T ss_dssp SSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSE
T ss_pred CCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCc
Confidence 4434 58887754 5677899986533 2446888998888774 334668999999999999999998663
No 428
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=81.19 E-value=1.6 Score=42.75 Aligned_cols=73 Identities=4% Similarity=-0.065 Sum_probs=50.6
Q ss_pred ccCCcceeEEEEec-------CCceEEEEEeeccc---ccchhhHHHHHHHhhcccC---CccceEeeeeecC---Ceee
Q 038393 531 GRGGIGSVYKARIQ-------DGTEVAVKVFNLQY---KEAFKSFDIECDMMKRIRH---RNLIKIISSCSND---DFKA 594 (618)
Q Consensus 531 g~g~~g~vy~~~~~-------~g~~vavK~l~~~~---~~~~~~f~~e~~~l~~l~h---~nlv~l~~~~~~~---~~~~ 594 (618)
+.|....+|+.... +|..+++|.-.... ......+..|.+++..+.. ..+.++++++..+ +..+
T Consensus 30 ~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~g~~~ 109 (357)
T 3ats_A 30 STGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVLGTPF 109 (357)
T ss_dssp TTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTTSSCE
T ss_pred CCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCccCCce
Confidence 66777889987764 26678888754332 1123568899998888843 3567888888765 3578
Q ss_pred EeeecCCCC
Q 038393 595 LPLLKEDQS 603 (618)
Q Consensus 595 lv~e~~~g~ 603 (618)
+||||+.|.
T Consensus 110 ~v~e~l~G~ 118 (357)
T 3ats_A 110 FLMDYVEGV 118 (357)
T ss_dssp EEEECCCCB
T ss_pred EEEEecCCC
Confidence 999998663
No 429
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=77.20 E-value=5.5 Score=39.10 Aligned_cols=68 Identities=6% Similarity=0.104 Sum_probs=50.3
Q ss_pred ccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCc--cceEeeeeecC-CeeeEeeecCCC
Q 038393 529 LIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRN--LIKIISSCSND-DFKALPLLKEDQ 602 (618)
Q Consensus 529 ~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~n--lv~l~~~~~~~-~~~~lv~e~~~g 602 (618)
.++.|....+|+... +|..+++|.-... ..+..|.+++..+.... +.++++++... +..|+||||+.|
T Consensus 48 ~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G 118 (362)
T 3ovc_A 48 QLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQG 118 (362)
T ss_dssp EEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCS
T ss_pred ECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCC
Confidence 356777888998875 5788888876422 35888988888886544 45778777765 668999999865
No 430
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=76.39 E-value=0.47 Score=48.65 Aligned_cols=56 Identities=7% Similarity=-0.046 Sum_probs=15.8
Q ss_pred cceeEEEEecC-CceEEE------EEeeccc--ccchhhHHHHHHHhhcccCCccceEeeeeecC
Q 038393 535 IGSVYKARIQD-GTEVAV------KVFNLQY--KEAFKSFDIECDMMKRIRHRNLIKIISSCSND 590 (618)
Q Consensus 535 ~g~vy~~~~~~-g~~vav------K~l~~~~--~~~~~~f~~e~~~l~~l~h~nlv~l~~~~~~~ 590 (618)
||.||+|.+.. ..+||| |...... ....+.|.+|..++.+.+|||+++.+++....
T Consensus 152 fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~~ 216 (463)
T 3cxl_A 152 YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVHT 216 (463)
T ss_dssp BCCC---------CCBGGGC-----------------------------------CBCCCEEEEC
T ss_pred chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEee
Confidence 99999999853 467888 6654322 22345688999999999999999999987643
No 431
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=75.95 E-value=3.5 Score=39.70 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=47.0
Q ss_pred ccccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccC----CccceEeeeeecCCeeeEeeecCCC
Q 038393 527 NNLIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRH----RNLIKIISSCSNDDFKALPLLKEDQ 602 (618)
Q Consensus 527 ~~~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h----~nlv~l~~~~~~~~~~~lv~e~~~g 602 (618)
...++.|....+|+. |..+++|.-... .....+..|.+++..+.+ ..+.+++++ +..++||||+.|
T Consensus 42 v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme~i~G 111 (320)
T 3r70_A 42 LRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMKYIKG 111 (320)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEECCCC
T ss_pred EEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEeecCC
Confidence 345678888889987 667888876432 123458899988888866 223455554 567899999855
Q ss_pred -Ccc
Q 038393 603 -SLT 605 (618)
Q Consensus 603 -~l~ 605 (618)
++.
T Consensus 112 ~~l~ 115 (320)
T 3r70_A 112 ERIT 115 (320)
T ss_dssp BCCC
T ss_pred cccc
Confidence 443
No 432
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=74.84 E-value=4.8 Score=38.44 Aligned_cols=68 Identities=9% Similarity=0.056 Sum_probs=47.1
Q ss_pred cccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCC---ccceEeeeee-cCCeeeEeeecCCCC
Q 038393 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHR---NLIKIISSCS-NDDFKALPLLKEDQS 603 (618)
Q Consensus 530 ~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~---nlv~l~~~~~-~~~~~~lv~e~~~g~ 603 (618)
++.|....+|+. |..+++|.-.. ......+..|.+++..+.+. -+.++++++. ..+..++||||..|.
T Consensus 27 l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~ 98 (306)
T 3tdw_A 27 LGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQ 98 (306)
T ss_dssp EEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSE
T ss_pred cCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCe
Confidence 455666677766 56688887421 22345789999999998653 3567777774 456689999998664
No 433
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=59.08 E-value=8.7 Score=36.45 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=44.3
Q ss_pred ccccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhccc-CCc--cceEeeeeecCC---eeeEeeecCCC
Q 038393 529 LIGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIR-HRN--LIKIISSCSNDD---FKALPLLKEDQ 602 (618)
Q Consensus 529 ~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~-h~n--lv~l~~~~~~~~---~~~lv~e~~~g 602 (618)
.++.|....+|+.. ..+++|.-... .....+.+|.+++..+. +.. +.++++++..++ ..|+||||+.|
T Consensus 27 ~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i~G 100 (304)
T 3sg8_A 27 ISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKG 100 (304)
T ss_dssp EEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECCCC
T ss_pred ecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcccCC
Confidence 35677777777643 45888875422 23456899999998873 333 345555554433 46899999866
Q ss_pred C
Q 038393 603 S 603 (618)
Q Consensus 603 ~ 603 (618)
.
T Consensus 101 ~ 101 (304)
T 3sg8_A 101 V 101 (304)
T ss_dssp E
T ss_pred e
Confidence 3
No 434
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=53.29 E-value=19 Score=34.55 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=37.6
Q ss_pred cccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccC--CccceEee------eeecCCeeeEeeecCC
Q 038393 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRH--RNLIKIIS------SCSNDDFKALPLLKED 601 (618)
Q Consensus 530 ~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h--~nlv~l~~------~~~~~~~~~lv~e~~~ 601 (618)
++.|..+.+|+....+|. +++|+.... ...+..|.+++..+.. -.+.+++. +...++..++||||+.
T Consensus 40 l~gG~~n~~~~v~~~~~~-~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i~ 114 (346)
T 2q83_A 40 IQGNQMALVWKVHTDSGA-VCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWIE 114 (346)
T ss_dssp CC----CEEEEEEETTEE-EEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECCC
T ss_pred ccccccCcEEEEEeCCCC-EEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEeec
Confidence 344567889988876554 889988642 2233445555544431 12344443 1124567899999986
Q ss_pred C
Q 038393 602 Q 602 (618)
Q Consensus 602 g 602 (618)
|
T Consensus 115 G 115 (346)
T 2q83_A 115 G 115 (346)
T ss_dssp C
T ss_pred C
Confidence 6
No 435
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=46.66 E-value=34 Score=32.53 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=44.9
Q ss_pred CCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCc--cceEeee-----eecCCeeeEeeecCCCC
Q 038393 533 GGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRN--LIKIISS-----CSNDDFKALPLLKEDQS 603 (618)
Q Consensus 533 g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~n--lv~l~~~-----~~~~~~~~lv~e~~~g~ 603 (618)
|....+|+....+|..+++|...... .....+..|.+++..+.... +++++.. ...++..++||||..|.
T Consensus 36 g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~G~ 112 (328)
T 1zyl_A 36 SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGR 112 (328)
T ss_dssp CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCCE
T ss_pred CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecCCC
Confidence 66678898877778789999886431 12345677887777764322 3444443 11245568899998763
No 436
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.91 E-value=50 Score=25.12 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=27.2
Q ss_pred ccccCCchhhhcCCCCCeEEcCCCcceeccchhhhcccCCCceecCC
Q 038393 418 QLEGSIPNDLCRLAALFQLDLGGNMLSGFIPACFGNLTYLKKLNLGS 464 (618)
Q Consensus 418 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 464 (618)
.++.+-..+|.++.+|+.+.+-.+ ++.+...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344455566666777776666554 3334455666666666666654
No 437
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=41.76 E-value=36 Score=33.92 Aligned_cols=71 Identities=7% Similarity=0.025 Sum_probs=44.3
Q ss_pred ccccCCcceeEEEEecCCceEEEEEeecccc----c-----chhhHHHHHHHhh-cccCCccceEeeeeecCCeeeEeee
Q 038393 529 LIGRGGIGSVYKARIQDGTEVAVKVFNLQYK----E-----AFKSFDIECDMMK-RIRHRNLIKIISSCSNDDFKALPLL 598 (618)
Q Consensus 529 ~~g~g~~g~vy~~~~~~g~~vavK~l~~~~~----~-----~~~~f~~e~~~l~-~l~h~nlv~l~~~~~~~~~~~lv~e 598 (618)
.+|.|..+.+|+... ++..++||...+... . ....++.|+.... +..+..+.+++++. ++..++|||
T Consensus 41 ~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv~e 117 (420)
T 2pyw_A 41 EVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIGMR 117 (420)
T ss_dssp ECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEEEC
T ss_pred EccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEEEe
Confidence 467788899998865 467899995432111 0 1223555553332 22334566777665 567899999
Q ss_pred cC-CC
Q 038393 599 KE-DQ 602 (618)
Q Consensus 599 ~~-~g 602 (618)
|. .|
T Consensus 118 ~l~~g 122 (420)
T 2pyw_A 118 YLEPP 122 (420)
T ss_dssp CCCTT
T ss_pred ecCCc
Confidence 99 87
No 438
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.32 E-value=72 Score=24.19 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=5.3
Q ss_pred ccCCCCCCCEEec
Q 038393 160 ELGNLAELEELWL 172 (618)
Q Consensus 160 ~l~~l~~L~~L~L 172 (618)
+|.++.+|+.+.+
T Consensus 38 aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 38 MFSGCTALEKLIL 50 (100)
T ss_dssp SSTTCTTCCCEEE
T ss_pred HHhccCCccEEEE
Confidence 3444444444433
No 439
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=37.24 E-value=41 Score=33.64 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=44.4
Q ss_pred cccCCcceeEEEEecC--------CceEEEEEeecccccchhhHHHHHHHhhcccCCcc-ceEeeeeecCCeeeEeeecC
Q 038393 530 IGRGGIGSVYKARIQD--------GTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNL-IKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 530 ~g~g~~g~vy~~~~~~--------g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nl-v~l~~~~~~~~~~~lv~e~~ 600 (618)
++.|....+|+...++ +..+.+|+.... .....+..|..++..+...++ .++++.+.. .+||||+
T Consensus 81 l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e~l 154 (429)
T 1nw1_A 81 IKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEEYI 154 (429)
T ss_dssp ECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEECCC
T ss_pred eCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEEEe
Confidence 4566678899988763 467888876321 111456678888888754444 567766542 2899998
Q ss_pred CC
Q 038393 601 DQ 602 (618)
Q Consensus 601 ~g 602 (618)
.|
T Consensus 155 ~G 156 (429)
T 1nw1_A 155 PS 156 (429)
T ss_dssp CE
T ss_pred CC
Confidence 66
No 440
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=31.26 E-value=60 Score=30.60 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=40.7
Q ss_pred cccCCcceeEEEEecCCceEEEEEeecccccchhhHHHHHHHhhcccCCcc--ceEeeee------ecCCeeeEeeecCC
Q 038393 530 IGRGGIGSVYKARIQDGTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNL--IKIISSC------SNDDFKALPLLKED 601 (618)
Q Consensus 530 ~g~g~~g~vy~~~~~~g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nl--v~l~~~~------~~~~~~~lv~e~~~ 601 (618)
++.|....+|+....+| .+++|..... ...+.+..|++++..+....+ .+++... ..++..++||||..
T Consensus 30 i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~l~ 106 (322)
T 2ppq_A 30 IAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFLE 106 (322)
T ss_dssp ECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEECCC
T ss_pred cCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEeCC
Confidence 44566678898887656 5778877642 123456677777776643232 3343221 12356789999986
Q ss_pred CC
Q 038393 602 QS 603 (618)
Q Consensus 602 g~ 603 (618)
|.
T Consensus 107 G~ 108 (322)
T 2ppq_A 107 GM 108 (322)
T ss_dssp CB
T ss_pred Cc
Confidence 64
No 441
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=30.09 E-value=61 Score=31.77 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=39.8
Q ss_pred cccCCcceeEEEEecC--------CceEEEEEeecccccchhhHHHHHHHhhcccCCcc-ceEeeeeecCCeeeEeeecC
Q 038393 530 IGRGGIGSVYKARIQD--------GTEVAVKVFNLQYKEAFKSFDIECDMMKRIRHRNL-IKIISSCSNDDFKALPLLKE 600 (618)
Q Consensus 530 ~g~g~~g~vy~~~~~~--------g~~vavK~l~~~~~~~~~~f~~e~~~l~~l~h~nl-v~l~~~~~~~~~~~lv~e~~ 600 (618)
+..|....+|+...++ +..+.+|+-... ......+.+|..+++.+.-..+ .++++++..+ +||||.
T Consensus 58 lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~g----~v~e~i 132 (379)
T 3feg_A 58 VSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPEG----RLEQYI 132 (379)
T ss_dssp C-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETTE----EEEECC
T ss_pred cCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCCc----cEEEEe
Confidence 3445566788888753 467888875321 1234456789888887743333 5677666432 999998
Q ss_pred CC
Q 038393 601 DQ 602 (618)
Q Consensus 601 ~g 602 (618)
.|
T Consensus 133 ~G 134 (379)
T 3feg_A 133 PS 134 (379)
T ss_dssp SE
T ss_pred cC
Confidence 66
No 442
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=26.18 E-value=22 Score=17.83 Aligned_cols=10 Identities=30% Similarity=1.189 Sum_probs=7.4
Q ss_pred CCCcceeeee
Q 038393 40 SSVCNWTGVT 49 (618)
Q Consensus 40 ~~~c~w~gv~ 49 (618)
+..|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3569999875
Done!